lowQualScore : 111111111111111111 11111111111111111111111111111
lowQualScore : 000000000000000000 11 11 11111111 1 111 22222 111 1111111 111 111111 22222222222 11111111111 2222222222 55555555555555555 22 66666666666666666666666666666 1111111 33333333333333333 111 1111 44444444 1 333333333333 111111 222 33 1111111 11 11 1 1 11 1111111 444444444444444 111 555555555555 6666666666 1 11 444444444444
lowQualScore : 4 4 333333333333333333 3 3 3 55 3 999 11 3 3 3 77 3 666 55 4 4 2 33 99999999 666 0 4 0 000 3 0 55555 0 4 000 6666666 3 3 3 000 99999 666666 66666666666 5 1 88888888888 1111111111 2 55 7 3 88888 3 44 555 3 2 66 44 00000000000000000 3 3 55 55 3 11 3 3 3 99999 22222222222222222222222222222 55 7777777 666 99999999999999999 55 222 666 9999 3 00000000 4 4 4 0 2 4 6 4 4 4 4 4 777 0 888888888888 55 5 7 3 3 111111 3 333 55 4 777 4 44 55 8888888 8 8 4 4 4 4 33 55 777 4 9 4 8 4 3 3 0 55 3 3 7777777 4 888 3 44 111111111111111 3 88888 3 3 6 5 3 3 000 3 111111111111 3 0 7777777777 3 3 3 4 2 11 555555555555 7777 6 3 3 3 4444 2 2 33 5 33 2 2
lowQualScore : . . .................. . . . .. . ... .. . . . .. . ... .. . . . .. ........ ... . . . ... . . ..... . . ... ....... . . . ... ..... ...... ........... . . ........... .......... . .. . . ..... . .. ... . . .. .. ................. . . .. .. . .. . . . ..... ............................. .. ....... ... ................. .. ... ... .... . ........ . . . . . . . . . . . . ... . ............ .. . . . . ...... . ... .. . ... . .. .. ....... . . . . . . .. .. ... . . . . . . . . .. . . ....... . ... . .. ............... . ..... . . . . . . ... . ............ . . .......... . . . . . .. ............ .... . . . . .... . . .. . .. . .
lowQualScore : 0 0 555555555555555555 6 6 6 00 6 666 33 6 6 6 55 6 444 00 0 0 8 55 99999999 666 3 0 9 444 6 5 77777 4 5 555 0000000 6 6 6 000 11111 111111 00000000000 7 3 22222222222 2222222222 8 00 3 3 33333 3 66 888 3 4 44 66 33333333333333333 3 3 00 00 6 55 3 3 6 11111 44444444444444444444444444444 00 7777777 444 22222222222222222 00 000 444 5555 6 44444444 0 0 0 4 1 0 9 0 0 0 0 0 000 5 999999999999 55 4 3 6 6 555555 5 444 55 4 000 0 55 55 5555555 0 0 4 4 4 4 99 99 000 0 4 0 0 0 6 6 9 55 3 3 5555555 8 444 3 66 111111111111111 3 33333 3 3 7 5 3 3 111 6 999999999999 6 5 8888888888 6 6 6 4 2 44 222222222222 1111 7 3 3 3 2222 4 4 22 7 99 9 9
consensus : GAGTTCGC-GT-GTTAACTA-----A--TA-TAG-TC-T-AGT--G-C-G-GAAGTT-TAGTG-T-ACG-CATGT-CTAG-T---CAA--CTAGT-GC-ACGTGAA--CAAA--GTT--TAG--TTTAGTTCAGAAA-TAAAAATATG-GCCGTCTT--C--AACAGATCGATTGTG--GAA--T--TGTCAA-TTTTGC-A-ACG---CA-----TTTTC----GATGG-CG-GCATTGAAGAATTA--------CANATGTATT-------CGCAT--AAA-TT-GA-----A-C--AA---C-TACAATT-TG--TCC------C-----T----CG-T-TAAC--CG--T-GTTCT-CCG-GGATCG-CAAATTTCCC-----CGAAATT-CGAATC-T---T-------------AAT--TT-----C-AA---GT-A-------------C-T--TTTNT-TTT---TA----TTGCA-ATTATC-AA---G-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCACGCTA-N--GG-G-AANAAT--TAATTG-TAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CCAA--GAT-C-A---CAGAA-AACACG-CA-CC-CC-TTTG-TAA-TTTT-TG---TCA-TATAT-TCTTC-AAAATCAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CG-TT--T----CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT--A--CG-TGT-GAGAATAGT-TAGCAATA--GA-TTTC-G-AC-TAGACTCGTCCACTTCCGGCAAACTAAAG-CACGTT--NGN---GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-A--CTATAG-TT--GGCA-CCCG-AACTCCA
Reference ( gi|5 ) : GAGTTCGC-GT-GAAAACTAC--TCA-GTA-TAG-TC-T-AGT--G-C-A-GAAGTT-CAGTG-T-ACG-CATGC-CTAG-T---CAA--CTAGT-GC-ACGCGAA--CAAA--TTT--TAG--TTTAGTTCAGAGA-TAAAAATATG-GCCGTCTT--A--AACAGATCGGTTGTG--GAA--T--TTTCAA-TTTTGC-A-ACG---CA-----TTTTT----GATGG-CG-GTATGGGAGAATTA--------CAAATGTACC-------CGCAT--AAA-TT-GA-----A-C--AA---C-TACAATT-TG--TCT------C-----G----CG-T-TAAC--CG--T-GACCT-CCG-GGATCG-CAAATTTCCC-----CGAA---------------T-------------AAT--TT-----C-AA---GT-A-------------C-T--TTTAT-TTT---TA----TTGCA-ATTAGT-AT---G-CTTG-CTC-TCCAAGTGAA-GAACTCGGTT-G-T-TG-CA-TTTT---ACCATGCTA-A--GG-ATAAGAAT--TAACTG-TAA-AACA-GTG------GTGTAAATCA-GTGT--AGT---GAA-CTTA--GAT-C-A---CAGAA-AACACG-CA-CC-CC-TTTG-TAA-GTTT-CG---TCA-TACAT-TCTTC-AAATTCAATCTA-TGC-T-TGTAGTG-C-AG-------AACTTA--CG-TT--T----C-C-A-T-TT-GTC-C-----G-CCA-TCTT-GAATTA-G-A--TCACTA-GT--T--CG-AAT-GAGAATAGT-TAGTAATATTGATTTTC-G-AC-TAGACTTTTTCACTTCCGGCAAACTAAAA-CACATT--ATT---GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-A--CTATAG-TT--GGCA-CCCG-AACTCCA
gi|4 : GAGTTCGC-GT-GTTCACTAC----ATGTA-TAG-TC-T-AGT--A-C-A-GCAGTT-TAGTA-T-ACG-CATTC-CTAG-T---CAA--CTAGT-TC-GTGTGAA--CAAA--GTT--TA---CTTAGT---------------ATG-GCCGTCTT--C--AACAGATCAATTGTG--GAA--A--TGTCAA-TTTTGC-A-ATG---TA-----TTTTC----GATGG-GG-GCATTAAAGAATTA--------CATATGTGCG-------AGCAA--AAA-TT-GA-----A-T--TA---C-TACAATC-TG--TCT------C-----T----CG-T-TAAC--CG--T-GTTCT-CCG-GCATCG-CAAATTTTCC-----CGAAATTACGAATCAAT--T-------------AAT--TT-----C-AA---AT-A-------------C-A--TGTAT-TTTGTTTAA---TTGCATATTATT-AA---G-CTTG-CTC-TCAAAGTGAA-GAACTCGAAT-A-T-TG-CA-TTTT---ACCACGCTA-AT-GG-A-AAGAAT--TAATTG-TAA-AACA-GTG------GTGTAAATAA-GTGT--AAT---GAA-CCAA--GAT-C-A---CAGAA-AACACG-CA-CC-CC-TTTG-TAA-TTTT-TG---TCA-TATAT-TCTTC-AAAATCGATATA-TGC-T-TGTAGTG-C-AG-------AACCTG--CG-TT--T----CACAA-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT--A--CT-TGT-GAGAATAGT-TAGTA------ATTTTC-G-AT-GAGAGTTGTTAATTTCTCGCAAACTAAAG-CACTTTCAGTT---G---AC----TAA-TAGTTTT-A-CTTAT--AAT-GAA--CTATAGTTT--GGCA-CCCG-AACTCCA
gi|3 : gtgGAGTTCGC-GT-GTGAACTA-----------TAG-TCCT-AGT--GGT-G-GAGGTT-TAGTGGT-ACG-CATGT-CTAG-T---CAA--CTAGA-G--ACGCGAAA-CAAA--GTG--TAG--TTTAGTTCAGA-A-TAAAA-TATG-GCCGTCTT--CT-ACCAGAT-GATTGTG--AAAAAT--TGTCCA-TTTTGCCA-GCG---TA-----TTTTC----GATGG-TG-GCATGAAA-AATTA--------CAAA----------------------A-TT-GA-----A----AA---C-TACA--C-TGGTTCC------T-----GAT--CG-T-TACC--CG--T-GTTCT-CCG-AGATCG-CAAATTTCCC-----CGAAATACGAATCATT---T-------------AAT--TT-----TTAA---GT-AG------------CAT--TTTCT-TTT---TA----TTGCA--TTATC-AA---G-CTTG-CTT---CAGGTAAA-GAACTCGATT-GGT-TGGCA-TTTTTAAACCACGCTA-A--GGGAAAATAAT--TAATTG-TAA-AACAAGTA------GTGGAAATAATATGTTAAAT---GAAACCAA--GAT-T-ATA-CAGAA-AGCACGGCAACT-CC-TTTGGTAG-TTTT-TG---TCA-TATAT-TCTTC-AAAATCAATCTA-TGC-TCTGT--TG-C-AG-------AACCTG--CG-TT--T----TAC-ATT-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT--A--CG---TGGAGAATAGT-TAACAA-----ATTATC-G-AC-TAG-CTCGTCCACTTCCGGCAAACTAAAAGCA-GTT--CGG---GTGAAC----TGA-TAGTTTTAA-CTT-TAAAGT-G-A----ATAG-TT--GGCACCCCG-AACTCCA
gi|2 : gtgGAGTTCGT-GT-GGTAACT---------TA-TAG-TC-T-AGT--G-C-G-GAAGGTATAGTG-T-ACG-CA-GT-CTAG-T---CAA--C-AGT-GC-ACGTGAA--CGAA--GTT--TAG--TTTAGTTCAGAAA-TAAAAATATG-GCCGTCTT--C--AACAGATCGA-TGTGAAAAA--T--TGTCCA-TTTTGC-A-ACGT--TA-----TATTTATCGGATGGTTG-GCATTGAAAAATTA--------T-GCTATATT-------CGAAT--AAACTT-GA-----A-C--AA---C-TACAA-T-TG--TCC------C-----T----CG-TACGAT--CG--T-GTTCT-CCG-AGGTCG-C-AATTTCCC-----CAAAAT-------------T-------------AAT--TT-----T-AA---GT-AG------------C-T--TTTTTCTTT---TA----TTGCA-ATTTGTCAA---G-CTTG-CGC-TCC-AGTAAA-GAACTC-ATT-G-TCTG-CATTTTT---ACCACGCTA-A--TG-GGAAGAAT--TAATTA-T-A-AACA-GTA------GGGAAAATAT-GTGT--AAT---GAA-CCCAAGAAT-T-A---CA-AA-AACACG-CA-CCTCT-TTTG-TAATGCAT-GG---TCACTATA--TCTTCAAAAATCAATCTATTGC-TCTGT--TG-C-AGCACCGTCGACCTG--CGCTT--T----A-C-T-T-TT-GTC-C-----G-CCA-TC-T-GAACTA-G-AACCCACTACGT--A--CG-CGG-TAGAATAGT----TGACATCGGGAGTC-G-ACATAGACTCGCCCACTTCCGGCAAACTCAAG-CACGTTCGGTA---GTGAAC----T-A-TAGTTGT-A-CTT-T--AGTAG-A--CTA-AG--T--GGCA-GCCG-c
gi|8 : gtgGAGTTCGC-GT-G----CTAA---CA---A-TAG-TC-T-AGT--G-C-G-GAGGTT-TAGTG-T-ACG-CGTAT-CTAG-T---CAA--CTACA-GC-ACGTGAA--CAAC--GTT--TAG--TTTAGTTCAGAAA-TAAAA-TATG-GCCGTCTT--C--AACAGATCGATTGTG--AAA----------A-TTGT------CA---CA-----TTT--------------------AAAAAAATA--------CATATGTATT-------CGCAT--AAA-CT-GA-----A-C--AA---C-TACAATT-GG--TCC------CTGAGCGAT--CG-T-TACC--CG--T-GTTCT-CCG-AGATCG-CAAATTTCCC-----CGAAATTACGAATCATTT-T-------------AAT--TT-----T-AA---GT-AAC-----------T-T--TTTAT-TTT---TA----TTGCA-ATTATC-AA---G-CTTG-ATC-TCCAGGTAAA-AAACTCAATT-G-T-TG-CA-TTTT---ACCACACTG-A--GG----------------G-TAA-AACA-GTG------GTGAAAATAT-ATGA--AAT---GAA-CCAA--GAT-T-A---CAGAA-AACACG-CA-CC-CC-TTTG-TAA-TTTTGTG---TCA-TATAT-TCTTC-AAAATCAATCTA-TGC-T-catcc
gi|1 : tgGAGTTCGC-GT-GTTGACTATAGTCA-CTG--AGCTC-TCAGT--G-C-A-GAAGTT-TAGTG-TTACG-CATGCTCTAG-T---CAAGACTAGT-GCCACGTGAAA-CAAAGATTTACTAG--TTTAATTCAGAAA-TAAA--TATGCGCCGTTCT--ATCAACAGATTAATTGTA--GAA--T--GGTAAA-TTT-GC-A-ACG---CA-----TTTTC----GATGG-CT-GTACTTGCTAAT------------AATTTATCGTATTTACGAATCAAAA-TTTGA-----A-C--AA---TATACAATT--G--TCT------T-----T----CG-T-TAAC--CAGCT-GTTCT-CGC-GGATCGTCTACTCACCC-----CGAAATTGCCGAATTCATTT-------------AAT--TTTCAA-C-AA---G----------------C-T--TTTTC-TTT---TAAACATTCCA-ATTA----C---G-CTTC-CTCATCCAAGTAAAAGAAC-CGCTT-G-T-TG-CA-TTTT---ACCA-GTCA-ATTGG-A-AATAATTATAATTG-TAAGAACA-ATGCGCTATACGTAAATAT-GTGT--AAT---CAA-C--A--AATAC-AAACTAGAATAACACGCCA-CC-CCTTTTA-TAA-CTTTATG---TCA-TATAT-TCTTCAAAATCCAATCTA-TGT-TATGT--TGCC-AGA------AACCTGCCCG-TTTAT----A-C-A-A-TT-GTC-C-----GCCCATTCTTAGAACTAGG-A--CCACTA-GG--TAACGCGGT-GA-ATTAAT-TAAC-ATAT--AGTCAC-GTAC-TA-ACTCGTTCACTCGCGGCAACTCAAAG-CCTCCT--GTCGA-GCGAAC----T-GCTGGTTTG-AGCTT-T---GT---A--CTATAG-TTTAGTCA-CCCGAAACTCCActtgt
gi|9 : tgGAGTTCGC-GT-GGTAACTA-----------TAG-TC-T-AGT--G-C-G-GAGGTT-TAGTG-T-ACG-CATAT-CTAG-T---CAA--CTAGT-GC-ACGTGGA--CAAA--GTT--TAG--TTTAGTGCAGAAA-T-AAAATATG-ACCGTCTT--C--AACAGATCGATTGTGA-AAA--T--TGTCCA-TTTTGC-A-ACG---CA-----TTTTC----ATTTG-TG-GCATTGAAAAATTA--------CATATGTATT-------CGTAT--AAA-TT-GAACGTCA-C--AA---C-TACAATT-GG--TCC------C-----T----CG-T-TACC--CG--T-GTTCT-CCG-AGATCG-CAAATTTCCC-----CGAAATTACGAATCATT--T-------------AAT--TT-----T-AA---GT-AGTTTTTTTTCCTCT-T--TTTCT-TTT---TA----TTGCA-ATTA
gi|7 : ggtgGAGTTCGC-GT-G-------C--TTA-ACAATAG-TC-T-AGTTGG-C-C-GGAGTT--AGT--T-ACG-CGTAT-CTAGCT---CAA--CTACA-GC-A-GTGAA--CAA---CGT--TAGATTTTCGATCAGAAA-ATAAAATATG--CCGTCTTCAA--GACAGATCGATTGTG--AAA--T--TGTCA-----------------CA-----TTT-----------------A-AAAAGAAT-A--------CAAATGTATT-------CGCAT--AAA-CT-GA-----A-C--AA---C-TACAATT-GG--TCCTTGAAGC-----GACT-CG-T-TACCCACG--TAGTTCTACCGAGAATC--TAAATTTCCCGAAAACGAATCATTTT--------T-------------AAT--TT-----T-AA---GTAA-------------C-T--TTTTA-TTT---TA----TTGCA-ATT--T-ATCAAGCCTTGAATC-TCCAGGTAAA-AAACTCAATTGG-T-TG-CA-TTTT---ACCAACCCA-C--G--------------ACGGCTAA-AACA-GTG------GTG-AAATAA-TTGA--AATCTCGAA-C--A--AAT---A---CAGAA-AACACG-CA-CC-CT-TCTG-TAA-TTTT-TGTGCTCA--ATATCTCTTC-AAAATCAATCTA-TGC-T-tcaaatttttagccttgctttaaaaatgattagcatgtt
gi|13 : tgGAGTTCGCCGTTGTTAACT----CCA-GTC-TA-------AGT--G-C-ATGAAGTT-TAGTG-T-ACG-CTTGT-CTAG-T----AA---TAGTGGC-ACGTGAA--CAAA----G--TAT--TTTAGTTCAGAAAGTAAATA-AGG-GC--TCTT--C--AACA-ATTAATTTT----AA--TAATGTCAATTTTTGC-ACACG---CA-----TTTTC----GATGG-AT-GCAATTGATAATTA--------C---CGTATT-------ATGAT--CAATTT-GA-----A-C--AAACCC-TACAATTGGG--TCT------A-----T----CGTT-TAAC--AG--T-GTTCT-CCG-Gcttgt
gi|19 : ggtgGAGATCGC-GT-GTTAACTA-----------TAG-TT-T-AGT--G-C-A-GGAGTT-TAATG-T-ACG-CATGT-CTAA-TTTATAG--CTAGT-TC-ACTCGAAATGAAA--TTT--Tacg
gi|22 : AGTTCGC-GT-G-----TCC--T-------TAG-CC-T-AGT--G-CTT-GAAGTT-TCGTA-T-ACGCCATGT-CTGG-T---CAA--Cttgaacaattcaaattaataaagtcttcatattcaaaacagtttcttatctgggcgcataaa
gi|11 : gtaa-TC-T-AGT--G-C-G-GAAGTT-C---G-T----------------T---CAA--CTAGT-GC-AT-TGAA--CA--------------------TCAGAAA-TAAAGAAATT-GC-GTCCTC-A--AACAG--TAGTTGTA--TAT--T--GTACA---TTTGC-A-ACAACACACGTAGTTTCG----GATGG-CAAGCATTG-AGAATCAATATCTTGTAAATGCACT-------AGAAT--GCA-TT-GA-----AGC--AG---C-TACA-TT-TG--TCTTCTTTAC-----GTCTTTG-T-T-AC--TG--T-GTCTC-TCG-GGA----AGAATGTCGT-----CGAA---------------T-------------AGCTGTT-----C-AA---GC-A-------------G-TAATTTAT-GTT---
gi|6 : ataat--TTTAGTTCAAAAA-TAAAGATATG-GCTGTCTT--C--AACAGATCGATTGTG--GAA--T--TTTTAA-TTTTGC-A-ACG---TA-----TTTTC----AATGG-CG-GCATTGAAGAATTG--------CATATGTACT-------CGCAT--AAA-TT-GA-----A-C--AA---C-TACAGTT-TG--TCT------C-----T----TG-T-TTAA--CA--T-GTTCT-CCG-GAATCG-CAAATTTTCC-----CGAA---------------TTTACGAATCATTTAAT--TT-----C-AA---GT-A-------------G-T--TTGTT-TTT---TA----TTGCA-ATTATT-AT---G-CTTG-CTC-CCCA-GTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCCCACTA--------TCATCAT--TCATGGGTAA-GAAA-GCG------GTGTAAATGA-GTGT--AGT---GAA-CAAA--GAG-T-A---CAGTA-AACATG-AA-TC-CC-TTTG-TAA-TTTC-TG---TCA-TATAT-TCTTC-AAAATTAATCTA-TGC-T-TGTAGTT-C-AG-------GGCCTA--CA-TT--T----CAC-A---CT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT--A--CG-TGT-GAGAATAGT-TAGTA------ATTTTT-G-AC-TAGACTTGTTTACTTCCTGCAAACTAAAG-CACGTA--CTG---GTGAAC----T-A-TAGTTTT-A-CTT-T--TGT-G-A--CTATAG-TT--GGCA-CCCG-AACT
gi|10 : t-GCCGTCTT--C--AACAGATTAATTGTA--GAA--T--GTTCAA-TTTTGC-A-ACG---TC-----TTTTC----GATGG-CT-GTATTGAATAATTA--------CGTATTTACG-------ATCAA--AAT-TT-GA-----A-C--AA---C-TACAATT-TG--TCC------T-----T----CA-T-TAAC--AG--T-TTTCT-CCG-GGATCG-TAAATTTCCC-----CGAAATTGCGAATCATT--T-------------AAT--TT-----C-AACAAGT-----------------T--TTTCT-TTT---TAAAA-TTGCA-ATTAA-------G-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCACGTCATT--GG-A-AATAAT--TAATTG-TAA-CACA-ATG------GTGTAAATAT-GTGT--AAT---CAA-C--A--AATACAA---CAGAATAATACG-C
gi|3 : T-GA-----A-CTAAA---C-TACACTT-TG--TTT------C-----G----CG-T-
gi|20 : gtggagttcgcgtgtgaactatagtcctagtggtggaggtttagtggtacgcatgtctagtcaactagagCC-CCG-GGATCG-CAAATTTCCC-----CGAA---------------TTACGAAT------AAT--TTATTTTC-GA---GT-A-------------A-T--TTT-----T---TA----TTGGA-ATTATC-AA---G-CTTG-ATT-CCCAAGTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ATCACGCCA-T--AG-GTAGGAAT--GAATTG-GAA-AACA-GTgaataaaatatggccgtcttctaccagatgattgtgaaaaattgtccattttgccagcgtattttcgatggtggcatgaaaaattacaaaattgaaaactacactggttcctgatcgttacccgtgttctccgagatcgcaaatttccccgaaatacgaatcatttaatttttaagtagcattttctttttattgcattatcaagcttgcttcaggtaaagaactcgattggttggcatttttaaaccacgctaagggaaaataattaattgtaaaacaagtagtggaaataatatgttaaatgaaaccaagattatacagaaagcacggcaactcctttggtagtttttgtcatatattcttcaaaatcaatctatgctctgttgcagaacctgcgttttacattttgtccgccatcttgaactagaccactagtacgtggagaatagttaacaaattatcgactagctcgtccacttccggcaaactaaaagcagttcgggtgaactgatagttttaactttaaagtgaatagttggcaccccgaactccac
gi|14 : A-ATTAA-------G-CTTG-CTC-TCCAAGCTAA-GAACTTGATC-G-T-TG-CA-TTTC---ACCACGCTA-T--GG-GTAAGATT--TAATTG-TAA-AACT-GTG------GTGTAAATTG-GTGT--AAT---GAA-TAAA--GGT-C-A---CAGAA-AACACG-CA-TC-CC-TTTG-TAG-TTTT-TG---TCA-TA------------------------GC-T-TTTAGTG-T-AG-------AACCTA--CG-TT--TAATAC-----T-TT-GTC-C-----G-CCA-TCTT-GAACAA-G-G--CCACTA-GT--A--CG-TGC-GAGAATAGT-TA
gi|12 : tAATTG-TAA-AACA-GTG------GCCTAAA------GG--AAT---GAA-AT-A--GAC-T-A---AAGAT-AAC---------------TG-AAA-GTTT-TG---TCA-TATAC-CC---------CG-------GC-T-TGTAGTA-C-AG-------AAGCTA--CT-TT--T----CAC-G-C-TGAGTC-C-----G-CCA-CCTTTGAACTA-G-A--CCACTA-GTACT--TG-G---GAGAATAGC-TAGTAAT------TTTC-G-AC-TAAACCTGTTCACTTCTGGTAAACTAAAG-CA-A-T--ATTTGAGTGAACTATAT-A-TAGTTTT-A-CTT-T--TGT-G-T--CTATAG-CT--GGCA-CATG-AACCCCAtt
gi|17 : G---TTA-TATAT-CATTC-AAAACCAATCTC-TAC------------------------CCTA--CG-TA--C----A-C-A-CGTT-GTC-T-----A-CCA-TCTT-GAAGTA-----------A-G-------G-----GAGAATAGT-TAGTAAT------TTTC-G-AG-TAAACTCATTCTCTTCCGGCAAACTATAG-CGCGTT--CGT---GTGAAC----T-A-TAGTTTT-A-CAT-T--A-T-G-A--
gi|18 : ctctATCTA-TGCGT-TGT--TG-CGAG-------AAACTG--GG-TT--T----TAC-A-T-TTTGTCAT-----A-CGA-TCTT-GAACTA-GCA--TTATGA-GT--A--TG-G---GAGAA-AGT-TAACA-TAGTGA--------AC-TAG-CTGTGCCCCTTCCGG-AAACTAAG--CA-GTT--AGG---GTGA-C----T-A-TAGTTGT-A-C-T-T--AGT-G-A--
gi|23 : TAGTG-C-AG-------AACTT------------------------T-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCAC
gi|15 : TG-C-AG-------AACCTG--CG-TT--T----TAC-A-T-TTTGTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT--A--CG-TGG-GAGAATAGT-TAACAATA--G----TC-G-AC-TAGACTCGTCCACTTCCGGCAAACTAATG-CACGTT--CGG---GTGAAC----T-A-TAGTTTT-A-CTT-A--AGT-G-A--CTATAG-TT--GGAA-CCTG-AACTC
gi|16 : taaatttccgaaatattacactctgtTG-C-AGG------AACCTG--CG-TT--T----TAC-A-T-TTTGTC-CACCCCG-CCA--CTT-GAAT-A-G-A--CCAC-A-GT--A--CG-TGT-GAGA-TAGTATAACAATA--G-----C-G-AC-TAG--CTCGCCACTTC-GGCAAACT-AAG-CACGTTC-GGC---GTGAAC----T-A-TAGTTTA-A-CTT-A--AGT-G-A---TATAGTTT--GGAA-CCTG-AACTC
gi|21 : ttccccgaacatattacactctgtATTTCCAG-AC-TAGACTTGTTCACTTTCGGCAAACTAAAG-CACGTT--CGG---GCGAAC----T-A-TAGTTTT-A-CTT-T--AGC-G-A--CTaca
gi|15 : actaaacaAAC----T-A-TAGTC---A-CTT-A--AGT-A-AAACTATAG-TT----CA-CCCG-AACgacaacagagatcggaactgc
gi|1 : taaatttccgaaatattacactctgttgcagaacctgcgttttacattttgtccgccatcttgaactagaccactagtacgtgggagaatagttaacaatagtcgactagactcgtccacttccggcaaactaatgcacT-C--AGT-G-A--CTATAG-TC--AACA-CGCG-AACTCCAggaacctgaactc
gi|3 : -T--AG--G-A--CTATAG-TT--CACA-CGCG-AACTCCAgctctcagtgcagaagtttagtgttacgcatgctctagtcaagactagtgccacgtgaaacaaagatttactagtttaattcagaaataaatatgcgccgttctatcaacagattaattgtagaatggtaaatttgcaacgcattttcgatggctgtacttgctaataatttatcgtatttacgaatcaaaatttgaacaatatacaattgtctttcgttaaccagctgttctcgcggatcgtctactcaccccgaaattgccgaattcatttaattttcaacaagctttttcttttaaacattccaattacgcttcctcatccaagtaaaagaaccgcttgttgcattttaccagtcaattggaaataattataattgtaagaacaatgcgctatacgtaaatatgtgtaatcaacaaatacaaactagaataacacgccaccccttttataactttatgtcatatattcttcaaaatccaatctatgttatgttgccagaaacctgcccgtttatacaattgtccgcccattcttagaactaggaccactaggtaacgcggtgaattaattaacatatagtcacgtactaactcgttcactcgcggcaactcaaagcctcctgtcgagcgaactgctggtttgagctttgtactatagtttagtcacccgaaactcca
gi|24 : g--AGT-G-A--CTATAG-TT--AGCA-CCCG-AACTCCAgtggtggaggtttagtggtacgcatgtctagtcaactagagacgcgaaacaaagtgtagtttagttcagaataaaatatggccgtcttctaccagatgattgtgaaaaattgtccattttgccagcgtattttcgatggtggcatgaaaaattacaaaattgaaaactacactggttcctgatcgttacccgtgttctccgagatcgcaaatttccccgaaatacgaatcatttaatttttaagtagcattttctttttattgcattatcaagcttgcttcaggtaaagaactcgattggttggcatttttaaaccacgctaagggaaaataattaattgtaaaacaagtagtggaaataatatgttaaatgaaaccaagattatacagaaagcacggcaactcctttggtagtttttgtcatatattcttcaaaatcaatctatgctctgttgcagaacctgcgttttacattttgtccgccatcttgaactagaccactagtacgtggagaatagttaacaaattatcgactagctcgtccacttccggcaaactaaaagcagttcgggtgaactgatagttttaactttaaagtgaatagttggcaccccgaactccac
gi|8 : -G-A--CTATTG-TT--AGCA-CGCG-AACTCCAc
gi|9 : -G-A--CTATAG-TT--ACCA-CGCG-AACTCCAtagtgcggaggtttagtgtacgcgtatctagtcaactacagcacgtgaacaacgtttagtttagttcagaaataaaatatggccgtcttcaacagatcgattgtgaaaattgtcacatttaaaaaaatacatatgtattcgcataaactgaacaactacaattggtccctgagcgatcgttacccgtgttctccgagatcgcaaatttccccgaaattacgaatcattttaattttaagtaactttttatttttattgcaattatcaagcttgatctccaggtaaaaaactcaattgttgcattttaccacactgagggtaaaacagtggtgaaaatatatgaaatgaaccaagattacagaaaacacgcacccctttgtaattttgtgtcatatattcttcaaaatcaatctatgctcttgt
Alignments
lowQualScore : 55555555 1111111111 111 1111111 1111 11111111 33333333333333333333333333333 55555555555555555 111111 444444444444444444444 22222222222222 111111 111 1 11 1111111 1 1 444444444
lowQualScore : 3 3 3 88888888 7777777777 3 44 3 77 33 3 3 3 3 3 555 44 3 3 3 7 66666666666 7777 44 3 222 3 3 3 6 44 0 9999 3 77 44 3 66 3 4444444 555 3 6 0000 3 3 1 555 1 22222222 5 3 4444 666 44 6 3 88888 3 555 3 88 00000000000000000000000000000 3 3 44 44 3 3 3 3 3 00000000000000000 555555 666666666666666666666 555 666 7777 3 7 1 3 3 3 3 3 3 3 3 3 666 666 3 00000000000000 55 3 3 3 000000 2 44 55 666 7 6 44 66 111 7 7 4 4 4 4 3 7 666 3 3 3 3 3 3 2 55 3 3 6666666 44 44 3 888 2 3 77777 3 3 6 3 3 44 6 3 2 3 3 3 111111111 44 3 3 3 0 3 3 3 3 3 666666 7777 6 3 3 3 3 44 3 3 8 55 4 4
lowQualScore : . . . ........ .......... . .. . .. .. . . . . . ... .. . . . . ........... .... .. . ... . . . . .. . .... . .. .. . .. . ....... ... . . .... . . . ... . ........ . . .... ... .. . . ..... . ... . .. ............................. . . .. .. . . . . . ................. ...... ..................... ... ... .... . . . . . . . . . . . . ... ... . .............. .. . . . ...... . .. .. ... . . .. .. ... . . . . . . . . ... . . . . . . . .. . . ....... .. .. . ... . . ..... . . . . . .. . . . . . . ......... .. . . . . . . . . . ...... .... . . . . . .. . . . .. . .
lowQualScore : 6 6 6 00000000 9999999999 3 66 3 55 88 3 3 3 3 3 888 66 6 6 6 3 44444444444 1111 66 3 222 1 1 1 2 66 2 8888 3 99 66 3 66 3 2222222 888 3 7 8888 3 3 1 000 6 11111111 4 3 9999 333 66 7 3 33333 3 888 3 44 33333333333333333333333333333 3 3 66 66 3 1 1 1 6 88888888888888888 000000 000000000000000000000 111 444 7777 6 3 6 3 6 6 6 6 6 6 6 6 444 444 6 00000000000000 00 3 3 3 555555 4 66 00 444 3 5 22 11 444 3 3 0 0 0 0 6 3 444 6 3 3 3 1 1 3 99 1 1 2222222 22 33 1 333 3 1 77777 1 1 2 1 1 22 7 3 5 3 3 6 444444444 66 3 3 2 8 3 3 3 3 3 222222 1111 7 3 3 3 3 22 1 1 0 55 0 0
consensus : GAGTTCGC-GT-G-TTAACTA------ATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTG--AAGAA--------TTACATAT-GTATT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATTA-CGAAT--CAT--TTAATTT----C-AAGT-A-------------C-----TTTTNT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGCT-A--N-GGG-AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CNAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGNGAGAA-TAGT-TAGCA-ATA--G--TT-TC--G-AC-TAGACTCGT-TCACTTCCGGCAAACT-AAAGC-A-CGT-T-CG--GGTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
Reference ( family-2102 ) : GAGTTCGC-GT-G-TTAACTA----ATATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTG--AAGAA--------TTACANAT-GTATT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATT--CGAAT--C----TTAATTT----C-AAGT-A-------------C-----TTTTNT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGCT-A--N-GGG-AANA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CCAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGTGAGAA-TAGT-TAGCA-ATA--GA-TT-TC--G-AC-TAGACTCGT-CCACTTCCGGCAAACT-AAAGC-A-CGT-T-NG--NGTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
gi|1 : GAGTTCGC-GT-G-TTGACTA-------TAGTCACTGAGCTCTCA-GT--G-CA-GAAGTT-TAGTG-TTACGC-ATGCTCTAG-T---CAAGACTAGT-GCCACGTG-AAACAAAGATTTACTAG--TTT----AATTCAGA--AA-TAAA--TATGCGCCGTTCTATC-AA--CAGATTAATTGTA--GA-A--T--GGT-AAA-TTT-GC-A-------ACG---CATTT-TC-GATGG-C-TGT-ACTTGCTAATAA--------TT---TATCGTATTTACG--AATCAAAA-TTTGA-----A-CAA---TATACAATT--GTC----------T---------TT-------CG-T-TAAC--CAGCT-GTTCT-C-GC-GGATCGTCTACTCACCCCGAAATTGCCGAAT--TCAT-TTAATTTTCAAC-AAG----------------C-----TTTTTC-TTTT---AAACATTCCA-A-TTAC---G-CTTC-CTCATCCAAGTAAAAGAAC-CGCTT-G-T-TG-CA-TTTT---ACCA----GTC-AATT-GGA-AATA--ATTATAAT-TGTAAGAACA-ATGCGCTATACGTAAATAT-GTGT--AAT---CAA-CAAAT-A-CAAACTAGAATAACACGCCA-CC-CCTTTTA-TAACTT-TATG---TCA-TATAT-TCTTC-AAAATCCAATCTA-TGT-TATGT--TGCC-AGA------AACCTGCCCGTTTATAC-A-A-TT-GTC-C-----GCCCATTCTTAGAACTAGG-A--CCACTAGGTAACGCG-GTGAATTAAT-TAACATATA--G--TC-AC--GTAC-TA-ACTCGT-TCACTCGCGGCAACTC-AAAGC-CTCCTGT-CG--AGCGAAC----T-GCTGGTTTG-AGCTT-T---GT---ACTATAG-TTTAGTCA-CCCGAAACTCCA
gi|10 : tg-GCCGT-CT-TC-AA--CAGATTAATTGTA--GA-A--T--GTT-CAA-TTTTGC-A-------ACG---TCTTT-TC-GATGG-C-TGT-A-TTG--AATAA--------TTACGTAT-TTA----CGATCAA--AAT-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------TT-------CA-T-TAAC--AG--T-TTTCT-C-CG-GGATCG-TAAATTTCCCCGAAATTG-CGAAT--CAT--TTAATTTCAA-C-AAGT---------------------TTTTCT-TTTTAAAA----TTGCA-A-TT---AAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGTC-AT-T-GGA-AATA--AT--TAAT-TGTAA-CACA-ATG------GTGTAAATAT-GTGT--AAT---CAA-CAAAT-ACAA---CAGAATAATACG-C
gi|11 : TC----------TA-GT--G-CG-GAAGTT----------CGT-----------T---CAA--CTAGT-GC-AT-TG-AA-CA------------------------TCAGA--AA-TAAAGAAATT-G-CGT-CC-TCAAA--CAG-TAG-TTGT----ATA--T--TGTACA---TTTGC-AACAACACACG---TAGTT-TCGGATGG-CAAGC-A-TTG---AGAATCAATATCTTGTAAAT-GCACT--AG--AAT--GCA-TT-GA-----AGCAG---C-TAC-ATT-TGTCTTCTTTACGTC---------TT-------TG-T-T-AC--TG--T-G-TCT-CTCG-GGA
gi|12 : ataatAAT-TGTAA-AACA-GTG------GCCTAAAGGA-ATGA--AAT---AGA-CTAA----------AGAT-AAC---------------TG-AAAGTT-T-TG---TCA-TATAC-CC----------CG-------GC-T-TGTAGTA-C-AG-------AAGCTA--CTTTT-CAC-G-C-TGAGTC-C-----G-CCA-CCTTTGAACTA-G-A--CCACTA-GT-ACTTGGGAGAA-TAGC-TAGTA-AT------TT-TC--G-AC-TAAACCTGT-TCACTTCTGGTAAACT-AAAGCAA-TAT-T-TG--AGTGAACTATAT-A-TAGTTTT-A-CTT-T--TGT-G-TCTATAG-CT--GGCA-CATG-AACCCCAagaatgtcgtcgaatagctgttcaagcagtaatttatgtt
gi|13 : GAGTTCGCCGTTG-TTAACTC-------CAGTC----------TAAGT--G-CATGAAGTT-TAGTG-T-ACGC-TTG-TCTAG-T----AA---TAGTGGC-ACGTG-AA-CAAAG------TAT--TTT----AGTTCAGA--AAGTAAATA-AGG-GC--T-CT-TC-AA--CA-ATTAATTTT----A-A--TAATGT-CAATTTTTGC-AC------ACG---CATTT-TC-GATGG-A-TGCAA-TTG---ATAA--------TTAC---C-GTATT--AT--GAT--CAATTT-GA-----A-CAAACCC-TACAATTGGGTC----------T---------AT-------CGTT-TAAC--AG--T-GTTCT-C-CG-G
gi|14 : ggtgATTAAG-CTTG-CTC-TCCAAGCTAA-GAACTTGATC-G-T-TG-CA-TTTC---ACCA---CGCT-A--T-GGGTAAGA--TT--TAAT-TGTAA-AACT-GTG------GTGTAAATTG-GTGT--AAT---GAA-TAAAG-GTCA---CAGAA-AACACG-CA-TC-CC-TTTG-TAGTTT-T-TG---TCA-TA-------------------------GC-T-TTTAGTG-T-AG-------AACCTA--CGTTT-AAT-ACT-TT-GTC-C-----G-CCA-TCTT-GAACAA-G-G--CCACTA-GT-ACGTGCGAGAA-TAGT-TAacg
gi|15 : ta-TTTCC-GAAAT---AT-TA-CAC-TCTGT--TG-C-AG-------AACCTG--CGTTT-TAC-A-T-TTTGTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGGGAGAA-TAGT-TAACA-ATA--G-----TC--G-AC-TAGACTCGT-CCACTTCCGGCAAACT-AATGC-A-CGT-T-CG--GGTGAAC----T-A-TAGTTTT-A-CTT-A--AGT-G-ACTATAG-TT--GGAA-CCTG-AACTCtt
gi|16 : taaaTG-C-AGG------AACCTG--CGTTT-TAC-A-T-TTTGTC-CACCCCG-CCA--CTT-GAA-TA-G-A--CCAC-A-GT-ACGTGTGAGA--TAGTATAACA-ATA--G------C--G-AC-TAG-CTCG--CCACTTC-GGCAAACT--AAGC-A-CGT-TCGG--CGTGAAC----T-A-TAGTTTA-A-CTT-A--AGT-G-A-TATAGTTT--GGAA-CCTG-AACTC
gi|17 : ttccccgaacatattacactctgtT-C-TG---TTA-TATAT-CATTC-AAAAC-CAATCTC-TAC------------------------CCTA--CGTA--CAC-A-CGTT-GTC-T-----A-CCA-TCTT-GAA----------------GT-AAG-G-GAGAA-TAGT-TAGTA-AT------TT-TC--G-AG-TAAACTCAT-TCTCTTCCGGCAAACT-ATAGC-G-CGT-T-CG--TGTGAAC----T-A-TAGTTTT-A-CAT-T--A-T-G-Aaca
gi|18 : cATCTA-TGCGT-TGT--TG-CGAG-------AAACTG--GGTTT-TAC-A-T-TTTGTCAT-----A-CGA-TCTT-GAACTA-GCA--TTATGA-GT-A--TGGGAGAA--AGT-TAACA--TA--G-----TG--A-AC-TAG-CT-GTGCCCCTTCCGG-AAACT-AA-GC-A--GT-T-AG--GGTGA-C----T-A-TAGTTGT-A-C-T-T--AGT-G-A
gi|19 : GAGATCGC-GT-G-TTAACTA-------TAGTT----------TA-GT--G-CA-GGAGTT-TAATG-T-ACGC-ATG-TCTAA-TTTATAG--CTAGT-TC-ACTCGAAA-TGAAA--TT--T----TTTGAACAATTCAAATTAA-TAAA----------GT-CT-TC-A
gi|2 : GAGTTCGT-GT-G-GTAACT------TATAGTC----------TA-GT--G-CG-GAAGGTATAGTG-T-ACGC-A-G-TCTAG-T---CAA--C-AGT-GC-ACGTG-AA-CGAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGA-TGTGAAAA-A--T--TGT-CCA-TTTTGC-A-------ACGTTATATTTATCGGATGGTT-GGC-A-TTG--AAAAA--------TTATGC-T-ATATT--CG--AAT--AAACTT-GA-----A-CAA---C-TACAA-T-TGTC----------C---------CT-------CG-TACGAT--CG--T-GTTCT-C-CG-AGGTCG-C-AATTTCCCCAAAA----------------TTAATTT----T-AAGT-AG------------C-----TTTTTTCTTTT---A----TTGCA-ATTTGTCAAG-CTTG-CGC-TCC-AGTAAA-GAACTC-ATT-G-TCTG-CATTTTT---ACCA---CGCTAA--T-GGG-AAGA--AT--TAAT-TAT-A-AACA-GTA------GGGAAAATAT-GTGT--AAT---GAACCCAAGAATTA---CA-AA-AACACG-CA-CCTCT-TTTG-TAATGCAT-GG---TCACTATA--TCTTCAAAAAT-CAATCTATTGC-TCTGT--TG-C-AGCACCGTCGACCTG--CGCTT-TAC-T-T-TT-GTC-C-----G-CCA-TC-T-GAACTA-G-AACCCACTACGT-ACGCGGTAGAA-TAGT-TGACA-TCG--GG-AG-TC--G-ACATAGACTCGC-CCACTTCCGGCAAACT-CAAGC-A-CGT-T-CGGTAGTGAAC----T-A-TAGTTGT-A-CTT-T--AGTAG-ACTA-AG--T--GGCA-GCCG-tattcaaaacagtttcttatctgggcgcataaa
gi|20 : gtgCC-C-CG-GGATCG-CAAATTTCCCCGAATTA--CGAATAAT----TTATTTT----C-GAGT-A-------------A-----TTTT-----TT---A----TTGGA-A-TTATCAAG-CTTG-ATT-CCCAAGTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ATCA---CGCC-A--T-AGGTAGGA--AT--GAAT-TGGAA-AACA-GTcatcc
gi|21 : A-TT-TCCAG-AC-TAGACTTGT-TCACTTTCGGCAAACT-AAAGC-A-CGT-T-CG--GGCGAAC----T-A-TAGTTTT-A-CTT-T--AGC-G-ACT
gi|22 : actaaacaAGTTCGC-GT-G-TC--CT--------TAGCC----------TA-GT--G-CTTGAAGTT-TCGTA-T-ACGCCATG-TCTGG-T---CAA--Cgacaacagagatcggaactgc
gi|23 : gtaaTAGTG-C-AG-------AAC-----------------T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCAC
gi|24 : --AGT-G-ACTATAG-TT--AGCA-CCCG-AACTCCA
gi|3 : GAGTTCGC-GT-G-TGAACTA-------TAGTCC---------TA-GT--GGTG-GAGGTT-TAGTGGT-ACGC-ATG-TCTAG-T---CAA--CTAGA-G--ACGCG-AAACAAAG--TG--TAG--TTT----AGTTCAGA--A--TAAAA-TATG-GCCGT-CT-TCTAC--CAGAT-GATTGTG--AA-AAAT--TGT-CCA-TTTTGCCA-------GCG---TATTT-TC-GATGG-T-GGC-A-T-G--AAAAA--------TTACA--------------------AAA-TT-GA-----A--AA---C-TACA-CT-GGTT----------C---------CTGAT----CG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAATA--CGAAT--CAT--TTAATTT----TTAAGT-AG------------CA----TTTTCT-TTTT---A----TTGCA---TTATCAAG-CTTG-CTT---CAGGTAAA-GAACTCGATT-GGT-TGGCA-TTTTTAAACCA---CGCT-A--A-GGG-AAAATAAT--TAAT-TGTAA-AACAAGTA------GTGGAAATAATATGTTAAAT---GAAACCAAG-ATTATA-CAGAA-AGCACGGCAACT-CC-TTTGGTAGTTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-TCTGT--TG-C-AG-------AACCTG--CGTTT-TAC-ATT-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTG-GAGAA-TAGT-TAACA-A-----A-TTATC--G-AC-TAG-CTCGT-CCACTTCCGGCAAACTAAAAGC-A--GT-T-CG--GGTGAAC----TGA-TAGTTTTAA-CTT-TAAAGT-G-A--ATAG-TT--GGCACCCCG-AACTCCAc
gi|4 : gtgGAGTTCGC-GT-G-TTCACTACAT-GTATAGTC----------TA-GT--A-CA-GCAGTT-TAGTA-T-ACGC-ATT-CCTAG-T---CAA--CTAGT-TC-GTGTG-AA-CAAAG--TT--TA---CTT----AGT-----------------ATG-GCCGT-CT-TC-AA--CAGATCAATTGTG--GA-A--A--TGT-CAA-TTTTGC-A-------ATG---TATTT-TC-GATGG-G-GGC-A-TTA--AAGAA--------TTACATAT-GTGCG--AG--CAA--AAA-TT-GA-----A-TTA---C-TACAATC-TGTC----------T---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GCATCG-CAAATTTTCCCGAAATTA-CGAAT--CAA--TTAATTT----C-AAAT-A-------------CATGTATTTTGT-TTA----A----TTGCATA-TTATTAAG-CTTG-CTC-TCAAAGTGAA-GAACTCGAAT-A-T-TG-CA-TTTT---ACCA---CGCT-A--ATGGA-AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAA-GTGT--AAT---GAA-CCAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CGATATA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CACAA-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACTTGTGAGAA-TAGT-TAGTA-AT------TT-TC--G-AT-GAGAGTTGT-TAATTTCTCGCAAACT-AAAGC-A-C-T-T-TC--AGTTGAC----TAA-TAGTTTT-A-CTTAT--AAT-GAACTATAGTTT--GGCA-CCCG-AACTCCAc
gi|5 : gtgGAGTTCGC-GT-G-AAAACTACTCAGTATAGTC----------TA-GT--G-CA-GAAGTT-CAGTG-T-ACGC-ATG-CCTAG-T---CAA--CTAGT-GC-ACGCG-AA-CAAAT--TT--TAG--TTT----AGTTCAGA--GA-TAAAAATATG-GCCGT-CT-TA-AA--CAGATCGGTTGTG--GA-A--T--TTT-CAA-TTTTGC-A-------ACG---CATTT-TT-GATGG-C-GGT-A-TGG--GAGAA--------TTACAAAT-GTACC--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------T---------CG-------CG-T-TAAC--CG--T-GACCT-C-CG-GGATCG-CAAATTTCCCCGAA------------------TAATTT----C-AAGT-A-------------C-----TTTTAT-TTTT---A----TTGCA-A-TTAGTATG-CTTG-CTC-TCCAAGTGAA-GAACTCGGTT-G-T-TG-CA-TTTT---ACCA---TGCT-A--A-GGATAAGA--AT--TAAC-TGTAA-AACA-GTG------GTGTAAATCA-GTGT--AGT---GAA-CTTAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAAGTT-T-CG---TCA-TACAT-TCTTC-AAATT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACTTA--CGTTT-C-C-A-T-TT-GTC-C-----G-CCA-TCTT-GAATTA-G-A--TCACTA-GT-TCGAATGAGAA-TAGT-TAGTA-ATATTGATTT-TC--G-AC-TAGACTTTT-TCACTTCCGGCAAACT-AAAAC-A-CAT-T-AT--TGTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
gi|6 : --TTT----AGTTCAAA--AA-TAAAGATATG-GCTGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TTT-TAA-TTTTGC-A-------ACG---TATTT-TC-AATGG-C-GGC-A-TTG--AAGAA--------TTGCATAT-GTACT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAGTT-TGTC----------T---------CT-------TG-T-TTAA--CA--T-GTTCT-C-CG-GAATCG-CAAATTTTCCCGAATTTA-CGAAT--CAT--TTAATTT----C-AAGT-A-------------G-----TTTGTT-TTTT---A----TTGCA-A-TTATTATG-CTTG-CTC-CCC-AGTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCC---CACT-A--T-----CATC--AT--TCATGGGTAA-GAAA-GCG------GTGTAAATGA-GTGT--AGT---GAA-CAAAG-AGTA---CAGTA-AACATG-AA-TC-CC-TTTG-TAATTT-C-TG---TCA-TATAT-TCTTC-AAAAT-TAATCTA-TGC-T-TGTAGTT-C-AG-------GGCCTA--CATTT-CAC-A---CT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGTGAGAA-TAGT-TAGTA-AT------TT-TT--G-AC-TAGACTTGT-TTACTTCCTGCAAACT-AAAGC-A-CGT-A-CT--GGTGAAC----T-A-TAGTTTT-A-CTT-T--TGT-G-ACTATAG-TT--GGCA-CCCG-AACT
gi|7 : tGAGTTCGC-GT-GCTTAAC------A-ATAGTC----------TA-GTTGG-CC-GGAGTT--AGT--T-ACGC-GTA-TCTAGCT---CAA--CTACA-GC-A-GTG-AA-CAACG--TT---AGATTTT----CGATCAGA--AA-ATAAAATATG--CCGT-CT-TC-AAGACAGATCGATTGTG--AA-A--T--TGT-CA-----------------------CATTT----AA--------------A--AAGAA--------T-ACAAAT-GTATT--CG--CAT--AAA-CT-GA-----A-CAA---C-TACAATT-GGTC----------CTTGAAGCGACT-------CG-T-TACCCACG--TAGTTCTAC-CGAGAATC--TAAATTTCCCGAAAA----CGAAT--CATTTTTAATTT----T-AAGTAA-------------C-----TTTTTA-TTTT---A----TTGCA-ATTTATCAAGCCTTGAATC-TCCAGGTAAA-AAACTCAATTGG-T-TG-CA-TTTT---ACCAACCCACG-A--C-GG------------------CTAA-AACA-GTG------GTG-AAATAA-TTGA--AATCTCGAA-C--AA-AT-A---CAGAA-AACACG-CA-CC-CT-TCTG-TAATTT-T-TGTGCTCA--ATATCTCTTC-AAAAT-CAATCTA-TGC-T-
gi|8 : tgGAGTTCGC-GT-G-CTAAC------A-ATAGTC----------TA-GT--G-CG-GAGGTT-TAGTG-T-ACGC-GTA-TCTAG-T---CAA--CTACA-GC-ACGTG-AA-CAACG--TT--TAG--TTT----AGTTCAGA--AA-TAAAA-TATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--AA-AA-T--TGT-CA-----------------------CATTT--------------------A--AAAAA--------ATACATAT-GTATT--CG--CAT--AAA-CT-GA-----A-CAA---C-TACAATT-GGTC----------C---------CTGAGCGATCG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAATTA-CGAAT--CATT-TTAATTT----T-AAGT-AAC-----------T-----TTTTAT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-ATC-TCCAGGTAAA-AAACTCAATT-G-T-TG-CA-TTTT---ACCA---CACT-G--A-GG------------------GTAA-AACA-GTG------GTGAAAATAT-ATGA--AAT---GAA-CCAAG-ATTA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-TGTG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-cttgt
gi|9 : tgGAGTTCGC-GT-G-GTAACTA-------TAGTC----------TA-GT--G-CG-GAGGTT-TAGTG-T-ACGC-ATA-TCTAG-T---CAA--CTAGT-GC-ACGTG-GA-CAAAG--TT--TAG--TTT----AGTGCAGA--AA-T-AAAATATG-ACCGT-CT-TC-AA--CAGATCGATTGTGA-AA-A--T--TGT-CCA-TTTTGC-A-------ACG---CATTT-TC-ATTTG-T-GGC-A-TTG--AAAAA--------TTACATAT-GTATT--CG--TAT--AAA-TT-GAACGTCA-CAA---C-TACAATT-GGTC----------C---------CT-------CG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAATTA-CGAAT--CAT--TTAATTT----T-AAGT-AGTTTTTTTTCCTCT-----TTTTCT-TTTT---A----TTGCA-A-TTATCAAA-TTTcttgt
Alignments
lowQualScore : 3333333 1111111111 111 1111111 1111 11111111 33333333333333333333333333333 111111 444444444444444444444 11 111111 111111111 1 11 1111111 1 2222222222222
lowQualScore : 3 3 3 1111111 7777777777 3 44 3 77 33 3 3 3 3 3 555 44 3 3 3 7 66666666666 7777 44 3 222 3 3 3 6 44 0 9999 3 77 44 3 66 3 4444444 555 3 6 0000 3 3 1 555 1 3 33333333 3 4444 666 44 6 3 88888 3 555 3 88 00000000000000000000000000000 3 3 44 44 3 3 3 3 3 666 3 3 55 3 555555 666666666666666666666 999 666 7777 3 7 1 3 3 3 3 3 3 3 3 3 666 666 7 999 88 5555 55 3 3 3 000000 2 44 55 666 7 1 333333333 7 7 4 4 4 4 3 7 666 3 3 3 3 3 3 2 55 3 3 6666666 44 44 3 888 2 3 77777 3 3 6 3 3 44 6 3 7 3 3 7777777777777 44 3 3 3 3 0 33 3 3 3 3 77 7777 6 3 3 3 3 44 3 3 8 55 4 4
lowQualScore : . . . ....... .......... . .. . .. .. . . . . . ... .. . . . . ........... .... .. . ... . . . . .. . .... . .. .. . .. . ....... ... . . .... . . . ... . . ........ . .... ... .. . . ..... . ... . .. ............................. . . .. .. . . . . . ... . . .. . ...... ..................... ... ... .... . . . . . . . . . . . . ... ... . ... .. .... .. . . . ...... . .. .. ... . . ......... . . . . . . . . ... . . . . . . . .. . . ....... .. .. . ... . . ..... . . . . . .. . . . . . ............. .. . . . . . .. . . . . .. .... . . . . . .. . . . .. . .
lowQualScore : 6 6 6 3333333 9999999999 3 66 3 55 88 3 3 3 3 3 888 66 6 6 6 3 44444444444 1111 66 3 222 1 1 1 2 66 2 8888 3 99 66 3 66 3 2222222 888 3 7 8888 3 3 1 000 6 3 55555555 3 9999 333 66 7 3 33333 3 888 3 44 33333333333333333333333333333 3 3 66 66 3 1 1 1 6 444 6 6 00 6 000000 000000000000000000000 555 444 7777 6 3 6 3 6 6 6 6 6 6 6 6 444 444 3 666 11 4444 00 3 3 3 555555 4 66 00 444 3 0 777777777 3 3 0 0 0 0 6 3 444 6 3 3 3 1 1 3 99 1 1 2222222 22 33 1 333 3 1 77777 1 1 2 1 1 22 7 3 5 3 3 8888888888888 66 3 3 3 2 8 44 3 3 3 3 99 1111 7 3 3 3 3 22 1 1 0 55 0 0
consensus : GAGTTCGC-GT-G-TTAACTA------ATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTG--AAGAATT-ACAT-------AT-GTATT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT----C-AAGT-A-------------C-----TTTTNT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGCT-A--TGGG-AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CNAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGNGAGAA-TAGT-TAGCA---ATA--G--TTTC--G-A-C-TAGACTCGT-TCACTTCCGGCAAACT-AAAGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
Reference ( family-2102 ) : GAGTTCGC-GT-G-TTAACTA------ATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTG--AAGAATT-ACAT-------AT-GTATT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT----C-AAGT-A-------------C-----TTTTNT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGCT-A--NGGG-AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CNAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGNGAGAA-TAGT-TAGCA---ATA--G--TTTC--G-A-C-TAGACTCGT-TCACTTCCGGCAAACT-AAAGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
gi|1 : GAGTTCGC-GT-G-TTGACTA-------TAGTCACTGAGCTCTCA-GT--G-CA-GAAGTT-TAGTG-TTACGC-ATGCTCTAG-T---CAAGACTAGT-GCCACGTG-AAACAAAGATTTACTAG--TTT----AATTCAGA--AA-TAAA--TATGCGCCGTTCTATC-AA--CAGATTAATTGTA--GA-A--T--GGT-AAA-TTT-GC-A-------ACG---CATTT-TC-GATGG-C-TGT-ACTTGCTAATAATT----T-------ATCGTATTTACG--AATCAAAA-TTTGA-----A-CAA---TATACAATT--GTC----------T---------TT-------CG-T-TAAC--CAGCT-GTTCT-C-GC-GGATCGTCTACTCACCCCGAAATTGCCGAATTCA--TTT-AATTTTCAAC-AAG----------------C-----TTTTTC-TTTT---AAACATTCCA-A-TTAC---G-CTTC-CTCATCCAAGTAAAAGAAC-CGCTT-G-T-TG-CA-TTTT---ACCA----GTC-AATTGGA-AATA--ATTATAAT-TGTAAGAACA-ATGCGCTATACGTAAATAT-GTGT--AAT---CAA-CAAAT-A-CAAACTAGAATAACACGCCA-CC-CCTTTTA-TAACTT-TATG---TCA-TATAT-TCTTC-AAAATCCAATCTA-TGT-TATGT--TGCC-AGA------AACCTGCCCGTTTATAC-A-A-TT-GTC-C-----GCCCATTCTTAGAACTAGG-A--CCACTAGGTAACGCG-GTGAATTAAT-TAACAT--ATA--G--TCAC--GTA-C-TA-ACTCGT-TCACTCGCGGCAACTC-AAAGC-CTCCTGTCGA--GCGAAC----T-GCTGGTTTG-AGCTT-T---GT---ACTATAG-TTTAGTCA-CCCGAAACTCCA
gi|10 : tg-GCCGT-CT-TC-AA--CAGATTAATTGTA--GA-A--T--GTT-CAA-TTTTGC-A-------ACG---TCTTT-TC-GATGG-C-TGT-A-TTG--AATAATT-ACGT-------AT-TTA----CGATCAA--AAT-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------TT-------CA-T-TAAC--AG--T-TTTCT-C-CG-GGATCG-TAAATTTCCCCGAAATTGC-GAAT-CA--TTT-AATTTCAA-C-AAGT---------------------TTTTCT-TTTTAAAA----TTGCA-A-TT---AAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGTC-AT-TGGA-AATA--AT--TAAT-TGTAA-CACA-ATG------GTGTAAATAT-GTGT--AAT---CAA-CAAAT-ACAA---CAGAATAATACG-C
gi|11 : TA------AT--TC----------TA-GT--G-CG-GAAGTT----------CGT-----------T---CAA--CTAGT-GC-AT-TG-AA-CA------------------------TCAGA--AA-TAAAGAAATT-G-CGT-CC-TCAAA--CAG-TAG-TTGT----ATA--T--TGTACA---TTTGC-AACAACACACG---TAGTT-TCGGATGG-CAAGC-A-TTG---AGAATCAATATCTTGTAAAT-GCACT--AG--AAT--GCA-TT-GA-----AGCAG---C-TAC-ATT-TGTCTTCTTTACGTC---------TT-------TG-T-T-AC--TG--T-G-TCT-CTCG-GGA
gi|12 : aAAT-TGTAA-AACA-GTG------GCCTAAAGGA-ATGA--AAT---AGA-CTAA----------AGAT-AAC---------------TG-AAAGTT-T-TG---TCA-TATAC-CC----------CG-------GC-T-TGTAGTA-C-AG-------AAGCTA--CTTTT-CAC-G-C-TGAGTC-C-----G-CCA-CCTTTGAACTA-G-A--CCACTA-GT-ACTTGGGAGAA-TAGC-TAGTA---AT------TTTC--G-A-C-TAAACCTGT-TCACTTCTGGTAAACT-AAAGCAA-TAT-TTGA--GTGAACTATAT-A-TAGTTTT-A-CTT-T--TGT-G-TCTATAG-CT--GGCA-CATG-AACCCCAagaatgtcgtcgaatagctgttcaagcagtaatttatgtt
gi|13 : GAGTTCGCCGTTG-TTAACTC-------CAGTC----------TAAGT--G-CATGAAGTT-TAGTG-T-ACGC-TTG-TCTAG-T----AA---TAGTGGC-ACGTG-AA-CAAAG------TAT--TTT----AGTTCAGA--AAGTAAATA-AGG-GC--T-CT-TC-AA--CA-ATTAATTTT----A-A--TAATGT-CAATTTTTGC-AC------ACG---CATTT-TC-GATGG-A-TGCAA-TTG---ATAATT-AC----------C-GTATT--AT--GAT--CAATTT-GA-----A-CAAACCC-TACAATTGGGTC----------T---------AT-------CGTT-TAAC--AG--T-GTTCT-C-CG-G
gi|14 : ggtgATTAAG-CTTG-CTC-TCCAAGCTAA-GAACTTGATC-G-T-TG-CA-TTTC---ACCA---CGCT-A--TGGGTAAGA--TT--TAAT-TGTAA-AACT-GTG------GTGTAAATTG-GTGT--AAT---GAA-TAAAG-GTCA---CAGAA-AACACG-CA-TC-CC-TTTG-TAGTTT-T-TG---TCA-TA-------------------------GC-T-TTTAGTG-T-AG-------AACCTA--CGTTT-AAT-ACT-TT-GTC-C-----G-CCA-TCTT-GAACAA-G-G--CCACTA-GT-ACGTGCGAGAA-TAGT-TAacg
gi|15 : ta-TTTCC-GAAAT---AT-TA-CAC-TCTGT--TG-C-AG-------AACCTG--CGTTT-TAC-A-T-TTTGTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGGGAGAA-TAGT-TAACA---ATA--G--T--C--G-A-C-TAGACTCGT-CCACTTCCGGCAAACT-AATGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-A--AGT-G-ACTATAG-TT--GGAA-CCTG-AACTCtt
gi|16 : taaaTG-C-AGG------AACCTG--CGTTT-TAC-A-T-TTTGTC-CACCCCG-CCA--CTT-GAA-TA-G-A--CCAC-A-GT-ACGTGTGAGA--TAGTATAACA---ATA--G-----C--G-A-C-TAG-CTCGC--CACTTC-GGCAAACT--AAGC-A-CGT-TCGGC-GTGAAC----T-A-TAGTTTA-A-CTT-A--AGT-G-A-TATAGTTT--GGAA-CCTG-AACTC
gi|17 : ttccccgaacatattacactctgtT-C-TG---TTA-TATAT-CATTC-AAAAC-CAATCTC-TAC------------------------CCTA--CGTA--CAC-A-CGTT-GTC-T-----A-CCA-TCTT-GAAGTA-A------------------GGGAGAA-TAGT-TAGTA---AT------TTTC--G-A-G-TAAACTCAT-TCTCTTCCGGCAAACT-ATAGC-G-CGT-TCGT--GTGAAC----T-A-TAGTTTT-A-CAT-T--A-T-G-Aaca
gi|18 : cATCTA-TGCGT-TGT--TG-CGAG-------AAACTG--GGTTT-TAC-A-T-TTTGTCAT-----A-CGA-TCTT-GAACTA-GCA--TTATGA-GT-A--TGGGAGAA--AGT-TAACA----TA--G--T-----G-AAC-TAG-CT-GTGCCCCTTCCGG-AAACT-AA-GC-A--GT-TAGG--GTGA-C----T-A-TAGTTGT-A-C-T-T--AGT-G-A
gi|19 : GAGATCGC-GT-G-TTAACTA-------TAGTT----------TA-GT--G-CA-GGAGTT-TAATG-T-ACGC-ATG-TCTAA-TTTATAG--CTAGT-TC-ACTCGAAA-TGAAA--TT--T----TTTGAACAATTCAAATTAA-TAAA----------GT-CT-TC-A
gi|2 : GAGTTCGT-GT-G-GTAACTT------ATAGTC----------TA-GT--G-CG-GAAGGTATAGTG-T-ACGC-A-G-TCTAG-T---CAA--C-AGT-GC-ACGTG-AA-CGAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGA-TGTGAAAA-A--T--TGT-CCA-TTTTGC-A-------ACGTTATATTTATCGGATGGTT-GGC-A-TTG--AAAAATT-ATGC--------T-ATATT--CG--AAT--AAACTT-GA-----A-CAA---C-TACAA-T-TGTC----------C---------CT-------CG-TACGAT--CG--T-GTTCT-C-CG-AGGTCG-C-AATTTCCCCAAAA---------------TT-AATTT----T-AAGT-AG------------C-----TTTTTTCTTTT---A----TTGCA-ATTTGTCAAG-CTTG-CGC-TCC-AGTAAA-GAACTC-ATT-G-TCTG-CATTTTT---ACCA---CGCTAA--TGGG-AAGA--AT--TAAT-TAT-A-AACA-GTA------GGGAAAATAT-GTGT--AAT---GAACCCAAGAATTA---CA-AA-AACACG-CA-CCTCT-TTTG-TAATGCAT-GG---TCACTATA--TCTTCAAAAAT-CAATCTATTGC-TCTGT--TG-C-AGCACCGTCGACCTG--CGCTT-TAC-T-T-TT-GTC-C-----G-CCA-TC-T-GAACTA-G-AACCCACTACGT-ACGCGGTAGAA-TAGT-TGACATCGGGA--G----TC--G-A-CATAGACTCGC-CCACTTCCGGCAAACT-CAAGC-A-CGT-TCGGTAGTGAAC----T-A-TAGTTGT-A-CTT-T--AGTAG-ACTA-AG--T--GGCA-GCCG-tattcaaaacagtttcttatctgggcgcataaa
gi|20 : gtgCC-C-CG-GGATCG-CAAATTTCCCCGAA-TTAC-GAAT-AA--TTT-ATTTT----C-GAGT-A-------------A-----TTTT-----TT---A----TTGGA-A-TTATCAAG-CTTG-ATT-CCCAAGTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ATCA---CGCC-A--TAGGTAGGA--AT--GAAT-TGGAA-AACA-GTcatcc
gi|21 : A---ACA--A--TTTCCAG-A-C-TAGACTTGT-TCACTTTCGGCAAACT-AAAGC-A-CGT-TCGG--GCGAAC----T-A-TAGTTTT-A-CTT-T--AGC-G-ACT
gi|22 : actaAGTTCGC-GT-G-TC--CT--------TAGCC----------TA-GT--G-CTTGAAGTT-TCGTA-T-ACGCCATG-TCTGG-T---CAA--Cgacaacagagatcggaactgc
gi|23 : gtaaTAGTG-C-AG-------AAC-----------------T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCAC
gi|24 : --AGT-G-ACTATAG-TT--AGCA-CCCG-AACTCCA
gi|3 : GAGTTCGC-GT-G-TGAACTA-------TAGTCC---------TA-GT--GGTG-GAGGTT-TAGTGGT-ACGC-ATG-TCTAG-T---CAA--CTAGA-G--ACGCG-AAACAAAG--TG--TAG--TTT----AGTTCAGA--A--TAAAA-TATG-GCCGT-CT-TCTAC--CAGAT-GATTGTG--AA-AAAT--TGT-CCA-TTTTGCCA-------GCG---TATTT-TC-GATGG-T-GGC-A-T-G--AAAAATT-ACA---------------------------AAA-TT-GA-----A--AA---C-TACA-CT-GGTT----------C---------CTGAT----CG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAAT-AC-GAAT-CA--TTT-AATTT----TTAAGT-AG------------CA----TTTTCT-TTTT---A----TTGCA---TTATCAAG-CTTG-CTT---CAGGTAAA-GAACTCGATT-GGT-TGGCA-TTTTTAAACCA---CGCT-A--AGGG-AAAATAAT--TAAT-TGTAA-AACAAGTA------GTGGAAATAATATGTTAAAT---GAAACCAAG-ATTATA-CAGAA-AGCACGGCAACT-CC-TTTGGTAGTTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-TCTGT--TG-C-AG-------AACCTG--CGTTT-TAC-ATT-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTG-GAGAA-TAGT-TAACA---A-A--T--TATC--G-A-C-TAG-CTCGT-CCACTTCCGGCAAACTAAAAGC-A--GT-TCGG--GTGAAC----TGA-TAGTTTTAA-CTT-TAAAGT-G-A--ATAG-TT--GGCACCCCG-AACTCCAc
gi|4 : gtgGAGTTCGC-GT-G-TTCACTACATGT-ATAGTC----------TA-GT--A-CA-GCAGTT-TAGTA-T-ACGC-ATT-CCTAG-T---CAA--CTAGT-TC-GTGTG-AA-CAAAG--TT--TA---CTT----AGT-----------------ATG-GCCGT-CT-TC-AA--CAGATCAATTGTG--GA-A--A--TGT-CAA-TTTTGC-A-------ATG---TATTT-TC-GATGG-G-GGC-A-TTA--AAGAATT-ACAT-------AT-GTGCG--AG--CAA--AAA-TT-GA-----A-TTA---C-TACAATC-TGTC----------T---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GCATCG-CAAATTTTCCCGAAATTAC-GAAT-CA--ATT-AATTT----C-AAAT-A-------------CATGTATTTTG--TTTA---A----TTGCATA-TTATTAAG-CTTG-CTC-TCAAAGTGAA-GAACTCGAAT-A-T-TG-CA-TTTT---ACCA---CGCTAA--TGGA-AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAA-GTGT--AAT---GAA-CCAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CGATATA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CACAA-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACTTGTGAGAA-TAGT-TAGTA---AT------TTTC--G-A-T-GAGAGTTGT-TAATTTCTCGCAAACT-AAAGC-A-CTT-TCAG--TTG-AC----TAA-TAGTTTT-A-CTTAT--AAT-GAACTATAGTTT--GGCA-CCCG-AACTCCAc
gi|5 : gtgGAGTTCGC-GT-G-AAAACTACTCAGTATAGTC----------TA-GT--G-CA-GAAGTT-CAGTG-T-ACGC-ATG-CCTAG-T---CAA--CTAGT-GC-ACGCG-AA-CAAAT--TT--TAG--TTT----AGTTCAGA--GA-TAAAAATATG-GCCGT-CT-TA-AA--CAGATCGGTTGTG--GA-A--T--TTT-CAA-TTTTGC-A-------ACG---CATTT-TT-GATGG-C-GGT-A-TGG--GAGAATT-ACAA-------AT-GTACC--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------T---------CG-------CG-T-TAAC--CG--T-GACCT-C-CG-GGATCG-CAAATTTCCCCGAA-----------------T-AATTT----C-AAGT-A-------------C-----TTTTAT-TTTT---A----TTGCA-A-TTAGTATG-CTTG-CTC-TCCAAGTGAA-GAACTCGGTT-G-T-TG-CA-TTTT---ACCA---TGCT-A--AGGATAAGA--AT--TAAC-TGTAA-AACA-GTG------GTGTAAATCA-GTGT--AGT---GAA-CTTAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAAGTT-T-CG---TCA-TACAT-TCTTC-AAATT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACTTA--CGTTT-C-C-A-T-TT-GTC-C-----G-CCA-TCTT-GAATTA-G-A--TCACTA-GT-TCGAATGAGAA-TAGT-TAGTA---ATATTGATTTTC--G-A-C-TAGACTTTT-TCACTTCCGGCAAACT-AAAAC-A-CAT-TATT--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
gi|6 : --TTT----AGTTCAAA--AA-TAAAGATATG-GCTGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TTT-TAA-TTTTGC-A-------ACG---TATTT-TC-AATGG-C-GGC-A-TTG--AAGAATT-GCAT-------AT-GTACT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAGTT-TGTC----------T---------CT-------TG-T-TTAA--CA--T-GTTCT-C-CG-GAATCG-CAAATTTTCCCGAATTTAC-GAAT-CA--TTT-AATTT----C-AAGT-A-------------G-----TTTGTT-TTTT---A----TTGCA-A-TTATTATG-CTTG-CTC-CCC-AGTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCC---CACT-A--T----CATC--AT--TCATGGGTAA-GAAA-GCG------GTGTAAATGA-GTGT--AGT---GAA-CAAAG-AGTA---CAGTA-AACATG-AA-TC-CC-TTTG-TAATTT-C-TG---TCA-TATAT-TCTTC-AAAAT-TAATCTA-TGC-T-TGTAGTT-C-AG-------GGCCTA--CATTT-CAC-A---CT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGTGAGAA-TAGT-TAGTA---AT------TTTT--G-A-C-TAGACTTGT-TTACTTCCTGCAAACT-AAAGC-A-CGT-ACTG--GTGAAC----T-A-TAGTTTT-A-CTT-T--TGT-G-ACTATAG-TT--GGCA-CCCG-AACT
gi|7 : tGAGTTCGC-GT-GCTTAAC-A------ATAGTC----------TA-GTTGG-CC-GGAGTT--AGT--T-ACGC-GTA-TCTAGCT---CAA--CTACA-GC-A-GTG-AA-CAACG--TT---AGATTTT----CGATCAGA--AA-ATAAAATATG--CCGT-CT-TC-AAGACAGATCGATTGTG--AA-A--T--TGT-CA-----------------------CATTT----AA--------------A--AAGAAT--ACAA-------AT-GTATT--CG--CAT--AAA-CT-GA-----A-CAA---C-TACAATT-GGTC----------CTTGAAGCGACT-------CG-T-TACCCACG--TAGTTCTAC-CGAGAATC--TAAATTT-CCCGAAA--AC-GAAT-CATTTTT-AATTT----T-AAGTAA-------------C-----TTTTTA-TTTT---A----TTGCA-ATTTATCAAGCCTTGAATC-TCCAGGTAAA-AAACTCAATTGG-T-TG-CA-TTTT---ACCAACCCACG-A--CGG------------------CTAA-AACA-GTG------GTG-AAATAA-TTGA--AATCTCGAA-CAAA----TA---CAGAA-AACACG-CA-CC-CT-TCTG-TAATTT-T-TGTGCTCA--ATATCTCTTC-AAAAT-CAATCTA-TGC-T-
gi|8 : tgGAGTTCGC-GT-G-CTAAC-A------ATAGTC----------TA-GT--G-CG-GAGGTT-TAGTG-T-ACGC-GTA-TCTAG-T---CAA--CTACA-GC-ACGTG-AA-CAACG--TT--TAG--TTT----AGTTCAGA--AA-TAAAA-TATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--AA-AA-T--TGT-CA-----------------------CATTT--------------------A--AAAAAAT-ACAT-------AT-GTATT--CG--CAT--AAA-CT-GA-----A-CAA---C-TACAATT-GGTC----------C---------CTGAGCGATCG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTTTAATTT----T-AAGT-AAC-----------T-----TTTTAT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-ATC-TCCAGGTAAA-AAACTCAATT-G-T-TG-CA-TTTT---ACCA---CACT-G--AGG------------------GTAA-AACA-GTG------GTGAAAATAT-ATGA--AAT---GAA-CCAAG-ATTA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-TGTG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-cttgt
gi|9 : tgGAGTTCGC-GT-G-GTAACTA-------TAGTC----------TA-GT--G-CG-GAGGTT-TAGTG-T-ACGC-ATA-TCTAG-T---CAA--CTAGT-GC-ACGTG-GA-CAAAG--TT--TAG--TTT----AGTGCAGA--AA-T-AAAATATG-ACCGT-CT-TC-AA--CAGATCGATTGTGA-AA-A--T--TGT-CCA-TTTTGC-A-------ACG---CATTT-TC-ATTTG-T-GGC-A-TTG--AAAAATT-ACAT-------AT-GTATT--CG--TAT--AAA-TT-GAACGTCA-CAA---C-TACAATT-GGTC----------C---------CT-------CG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT----T-AAGT-AGTTTTTTTTCCTCT-----TTTTCT-TTTT---A----TTGCA-A-TTATCAAA-TTTcttgt
Alignments
lowQualScore : 3333333 1111111111 111 1111111 1111 11111111 33333333333333333333333333333 111111 444444444444444444444 111111111 111111 111111111 1 11 1111111 1 2222222222222
lowQualScore : 3 3 3 1111111 7777777777 3 44 3 77 33 3 3 3 3 3 555 44 3 3 3 7 66666666666 7777 44 3 222 3 3 3 6 44 0 9999 3 77 44 3 66 3 4444444 555 3 6 0000 3 3 1 555 1 3 33333333 3 4444 666 44 6 3 88888 3 555 3 88 00000000000000000000000000000 3 3 44 44 3 3 3 3 3 666 3 3 55 3 555555 666666666666666666666 999 666 7777 3 7 1 3 3 3 3 3 3 3 3 3 666 666 777777777 5555 55 3 3 3 000000 2 44 55 666 7 1 333333333 7 7 4 4 4 4 3 7 666 3 3 3 3 3 3 2 55 3 3 6666666 44 44 3 888 2 3 77777 3 3 6 3 3 44 6 3 7 3 3 7777777777777 44 3 3 3 3 0 33 3 3 3 3 77 7777 6 3 3 3 3 44 3 3 8 55 4 4
lowQualScore : . . . ....... .......... . .. . .. .. . . . . . ... .. . . . . ........... .... .. . ... . . . . .. . .... . .. .. . .. . ....... ... . . .... . . . ... . . ........ . .... ... .. . . ..... . ... . .. ............................. . . .. .. . . . . . ... . . .. . ...... ..................... ... ... .... . . . . . . . . . . . . ... ... ......... .... .. . . . ...... . .. .. ... . . ......... . . . . . . . . ... . . . . . . . .. . . ....... .. .. . ... . . ..... . . . . . .. . . . . . ............. .. . . . . . .. . . . . .. .... . . . . . .. . . . .. . .
lowQualScore : 6 6 6 3333333 9999999999 3 66 3 55 88 3 3 3 3 3 888 66 6 6 6 3 44444444444 1111 66 3 222 1 1 1 2 66 2 8888 3 99 66 3 66 3 2222222 888 3 7 8888 3 3 1 000 6 3 55555555 3 9999 333 66 7 3 33333 3 888 3 44 33333333333333333333333333333 3 3 66 66 3 1 1 1 6 444 6 6 00 6 000000 000000000000000000000 555 444 7777 6 3 6 3 6 6 6 6 6 6 6 6 444 444 000000000 4444 00 3 3 3 555555 4 66 00 444 3 0 777777777 3 3 0 0 0 0 6 3 444 6 3 3 3 1 1 3 99 1 1 2222222 22 33 1 333 3 1 77777 1 1 2 1 1 22 7 3 5 3 3 8888888888888 66 3 3 3 2 8 44 3 3 3 3 99 1111 7 3 3 3 3 22 1 1 0 55 0 0
consensus : GAGTTCGC-GT-G-TTAACTA------ATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTG--AAGAATT-ACAT-------AT-GTATT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT----C-AAGT-A-------------C-----TTTTNT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGCT-A--TGGG-AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CNAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGNGAGAA-TAGT-TAGCA---ATA--G--TTTC--G-A-C-TAGACTCGT-TCACTTCCGGCAAACT-AAAGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
Reference ( family-2102 ) : GAGTTCGC-GT-G-TTAACTA------ATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTG--AAGAATT-ACAT-------AT-GTATT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT----C-AAGT-A-------------C-----TTTTNT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGCT-A--TGGG-AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CNAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGNGAGAA-TAGT-TAGCA---ATA--G--TTTC--G-A-C-TAGACTCGT-TCACTTCCGGCAAACT-AAAGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
gi|1 : GAGTTCGC-GT-G-TTGACTA-------TAGTCACTGAGCTCTCA-GT--G-CA-GAAGTT-TAGTG-TTACGC-ATGCTCTAG-T---CAAGACTAGT-GCCACGTG-AAACAAAGATTTACTAG--TTT----AATTCAGA--AA-TAAA--TATGCGCCGTTCTATC-AA--CAGATTAATTGTA--GA-A--T--GGT-AAA-TTT-GC-A-------ACG---CATTT-TC-GATGG-C-TGT-ACTTGCTAATAATT----T-------ATCGTATTTACG--AATCAAAA-TTTGA-----A-CAA---TATACAATT--GTC----------T---------TT-------CG-T-TAAC--CAGCT-GTTCT-C-GC-GGATCGTCTACTCACCCCGAAATTGCCGAATTCA--TTT-AATTTTCAAC-AAG----------------C-----TTTTTC-TTTT---AAACATTCCA-A-TTAC---G-CTTC-CTCATCCAAGTAAAAGAAC-CGCTT-G-T-TG-CA-TTTT---ACCA----GTC-AATTGGA-AATA--ATTATAAT-TGTAAGAACA-ATGCGCTATACGTAAATAT-GTGT--AAT---CAA-CAAAT-A-CAAACTAGAATAACACGCCA-CC-CCTTTTA-TAACTT-TATG---TCA-TATAT-TCTTC-AAAATCCAATCTA-TGT-TATGT--TGCC-AGA------AACCTGCCCGTTTATAC-A-A-TT-GTC-C-----GCCCATTCTTAGAACTAGG-A--CCACTAGGTAACGCG-GTGAATTAAT-TAACAT--ATA--G--TCAC--GTA-C-TA-ACTCGT-TCACTCGCGGCAACTC-AAAGC-CTCCTGTCGA--GCGAAC----T-GCTGGTTTG-AGCTT-T---GT---ACTATAG-TTTAGTCA-CCCGAAACTCCA
gi|10 : tg-GCCGT-CT-TC-AA--CAGATTAATTGTA--GA-A--T--GTT-CAA-TTTTGC-A-------ACG---TCTTT-TC-GATGG-C-TGT-A-TTG--AATAATT-ACGT-------AT-TTA----CGATCAA--AAT-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------TT-------CA-T-TAAC--AG--T-TTTCT-C-CG-GGATCG-TAAATTTCCCCGAAATTGC-GAAT-CA--TTT-AATTTCAA-C-AAGT---------------------TTTTCT-TTTTAAAA----TTGCA-A-TT---AAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGTC-AT-TGGA-AATA--AT--TAAT-TGTAA-CACA-ATG------GTGTAAATAT-GTGT--AAT---CAA-CAAAT-ACAA---CAGAATAATACG-C
gi|11 : TA------AT--TC----------TA-GT--G-CG-GAAGTT----------CGT-----------T---CAA--CTAGT-GC-AT-TG-AA-CA------------------------TCAGA--AA-TAAAGAAATT-G-CGT-CC-TCAAA--CAG-TAG-TTGT----ATA--T--TGTACA---TTTGC-AACAACACACG---TAGTT-TCGGATGG-CAAGC-A-TTG---AGAATCAATATCTTGTAAAT-GCACT--AG--AAT--GCA-TT-GA-----AGCAG---C-TAC-ATT-TGTCTTCTTTACGTC---------TT-------TG-T-T-AC--TG--T-G-TCT-CTCG-GGA
gi|12 : aAAT-TGTAA-AACA-GTG------GCCTAAAGGA-ATGA--AAT---AGA-CTAA----------AGAT-AAC---------------TG-AAAGTT-T-TG---TCA-TATAC-CC----------CG-------GC-T-TGTAGTA-C-AG-------AAGCTA--CTTTT-CAC-G-C-TGAGTC-C-----G-CCA-CCTTTGAACTA-G-A--CCACTA-GT-ACTTGGGAGAA-TAGC-TAGTA---AT------TTTC--G-A-C-TAAACCTGT-TCACTTCTGGTAAACT-AAAGCAA-TAT-TTGA--GTGAACTATAT-A-TAGTTTT-A-CTT-T--TGT-G-TCTATAG-CT--GGCA-CATG-AACCCCAagaatgtcgtcgaatagctgttcaagcagtaatttatgtt
gi|13 : GAGTTCGCCGTTG-TTAACTC-------CAGTC----------TAAGT--G-CATGAAGTT-TAGTG-T-ACGC-TTG-TCTAG-T----AA---TAGTGGC-ACGTG-AA-CAAAG------TAT--TTT----AGTTCAGA--AAGTAAATA-AGG-GC--T-CT-TC-AA--CA-ATTAATTTT----A-A--TAATGT-CAATTTTTGC-AC------ACG---CATTT-TC-GATGG-A-TGCAA-TTG---ATAATT-AC----------C-GTATT--AT--GAT--CAATTT-GA-----A-CAAACCC-TACAATTGGGTC----------T---------AT-------CGTT-TAAC--AG--T-GTTCT-C-CG-G
gi|14 : ggtgATTAAG-CTTG-CTC-TCCAAGCTAA-GAACTTGATC-G-T-TG-CA-TTTC---ACCA---CGCT-A--TGGGTAAGA--TT--TAAT-TGTAA-AACT-GTG------GTGTAAATTG-GTGT--AAT---GAA-TAAAG-GTCA---CAGAA-AACACG-CA-TC-CC-TTTG-TAGTTT-T-TG---TCA-TA-------------------------GC-T-TTTAGTG-T-AG-------AACCTA--CGTTT-AAT-ACT-TT-GTC-C-----G-CCA-TCTT-GAACAA-G-G--CCACTA-GT-ACGTGCGAGAA-TAGT-TAacg
gi|15 : ta-TTTCC-GAAAT---AT-TA-CAC-TCTGT--TG-C-AG-------AACCTG--CGTTT-TAC-A-T-TTTGTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGGGAGAA-TAGT-TAACA---ATA--G--T--C--G-A-C-TAGACTCGT-CCACTTCCGGCAAACT-AATGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-A--AGT-G-ACTATAG-TT--GGAA-CCTG-AACTCtt
gi|16 : taaaTG-C-AGG------AACCTG--CGTTT-TAC-A-T-TTTGTC-CACCCCG-CCA--CTT-GAA-TA-G-A--CCAC-A-GT-ACGTGTGAGA--TAGTATAACA---ATA--G-----C--G-A-C-TAG-CTCGC--CACTTC-GGCAAACT--AAGC-A-CGT-TCGGC-GTGAAC----T-A-TAGTTTA-A-CTT-A--AGT-G-A-TATAGTTT--GGAA-CCTG-AACTC
gi|17 : ttccccgaacatattacactctgtT-C-TG---TTA-TATAT-CATTC-AAAAC-CAATCTC-TAC------------------------CCTA--CGTA--CAC-A-CGTT-GTC-T-----A-CCA-TCTT-GAAGTA-A------------------GGGAGAA-TAGT-TAGTA---AT------TTTC--G-A-G-TAAACTCAT-TCTCTTCCGGCAAACT-ATAGC-G-CGT-TCGT--GTGAAC----T-A-TAGTTTT-A-CAT-T--A-T-G-Aaca
gi|18 : cATCTA-TGCGT-TGT--TG-CGAG-------AAACTG--GGTTT-TAC-A-T-TTTGTCAT-----A-CGA-TCTT-GAACTA-GCA--TTATGA-GT-A--TGGGAGAA--AGT-TAACA----TA--G--T-----G-AAC-TAG-CT-GTGCCCCTTCCGG-AAACT-AA-GC-A--GT-TAGG--GTGA-C----T-A-TAGTTGT-A-C-T-T--AGT-G-A
gi|19 : GAGATCGC-GT-G-TTAACTA-------TAGTT----------TA-GT--G-CA-GGAGTT-TAATG-T-ACGC-ATG-TCTAA-TTTATAG--CTAGT-TC-ACTCGAAA-TGAAA--TT--T----TTTGAACAATTCAAATTAA-TAAA----------GT-CT-TC-A
gi|2 : GAGTTCGT-GT-G-GTAACTT------ATAGTC----------TA-GT--G-CG-GAAGGTATAGTG-T-ACGC-A-G-TCTAG-T---CAA--C-AGT-GC-ACGTG-AA-CGAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGA-TGTGAAAA-A--T--TGT-CCA-TTTTGC-A-------ACGTTATATTTATCGGATGGTT-GGC-A-TTG--AAAAATT-ATGC--------T-ATATT--CG--AAT--AAACTT-GA-----A-CAA---C-TACAA-T-TGTC----------C---------CT-------CG-TACGAT--CG--T-GTTCT-C-CG-AGGTCG-C-AATTTCCCCAAAA---------------TT-AATTT----T-AAGT-AG------------C-----TTTTTTCTTTT---A----TTGCA-ATTTGTCAAG-CTTG-CGC-TCC-AGTAAA-GAACTC-ATT-G-TCTG-CATTTTT---ACCA---CGCTAA--TGGG-AAGA--AT--TAAT-TAT-A-AACA-GTA------GGGAAAATAT-GTGT--AAT---GAACCCAAGAATTA---CA-AA-AACACG-CA-CCTCT-TTTG-TAATGCAT-GG---TCACTATA--TCTTCAAAAAT-CAATCTATTGC-TCTGT--TG-C-AGCACCGTCGACCTG--CGCTT-TAC-T-T-TT-GTC-C-----G-CCA-TC-T-GAACTA-G-AACCCACTACGT-ACGCGGTAGAA-TAGT-TGACATCGGGA--G----TC--G-A-CATAGACTCGC-CCACTTCCGGCAAACT-CAAGC-A-CGT-TCGGTAGTGAAC----T-A-TAGTTGT-A-CTT-T--AGTAG-ACTA-AG--T--GGCA-GCCG-tattcaaaacagtttcttatctgggcgcataaa
gi|20 : gtgCC-C-CG-GGATCG-CAAATTTCCCCGAA-TTAC-GAAT-AA--TTT-ATTTT----C-GAGT-A-------------A-----TTTT-----TT---A----TTGGA-A-TTATCAAG-CTTG-ATT-CCCAAGTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ATCA---CGCC-A--TAGGTAGGA--AT--GAAT-TGGAA-AACA-GTcatcc
gi|21 : A---ACA--A--TTTCCAG-A-C-TAGACTTGT-TCACTTTCGGCAAACT-AAAGC-A-CGT-TCGG--GCGAAC----T-A-TAGTTTT-A-CTT-T--AGC-G-ACT
gi|22 : actaAGTTCGC-GT-G-TC--CT--------TAGCC----------TA-GT--G-CTTGAAGTT-TCGTA-T-ACGCCATG-TCTGG-T---CAA--Cgacaacagagatcggaactgc
gi|23 : gtaaTAGTG-C-AG-------AAC-----------------T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCAC
gi|24 : --AGT-G-ACTATAG-TT--AGCA-CCCG-AACTCCA
gi|3 : GAGTTCGC-GT-G-TGAACTA-------TAGTCC---------TA-GT--GGTG-GAGGTT-TAGTGGT-ACGC-ATG-TCTAG-T---CAA--CTAGA-G--ACGCG-AAACAAAG--TG--TAG--TTT----AGTTCAGA--A--TAAAA-TATG-GCCGT-CT-TCTAC--CAGAT-GATTGTG--AA-AAAT--TGT-CCA-TTTTGCCA-------GCG---TATTT-TC-GATGG-T-GGC-A-T-G--AAAAATT-ACA---------------------------AAA-TT-GA-----A--AA---C-TACA-CT-GGTT----------C---------CTGAT----CG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAAT-AC-GAAT-CA--TTT-AATTT----TTAAGT-AG------------CA----TTTTCT-TTTT---A----TTGCA---TTATCAAG-CTTG-CTT---CAGGTAAA-GAACTCGATT-GGT-TGGCA-TTTTTAAACCA---CGCT-A--AGGG-AAAATAAT--TAAT-TGTAA-AACAAGTA------GTGGAAATAATATGTTAAAT---GAAACCAAG-ATTATA-CAGAA-AGCACGGCAACT-CC-TTTGGTAGTTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-TCTGT--TG-C-AG-------AACCTG--CGTTT-TAC-ATT-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTG-GAGAA-TAGT-TAACA---A-A--T--TATC--G-A-C-TAG-CTCGT-CCACTTCCGGCAAACTAAAAGC-A--GT-TCGG--GTGAAC----TGA-TAGTTTTAA-CTT-TAAAGT-G-A--ATAG-TT--GGCACCCCG-AACTCCAc
gi|4 : gtgGAGTTCGC-GT-G-TTCACTACATGT-ATAGTC----------TA-GT--A-CA-GCAGTT-TAGTA-T-ACGC-ATT-CCTAG-T---CAA--CTAGT-TC-GTGTG-AA-CAAAG--TT--TA---CTT----AGT-----------------ATG-GCCGT-CT-TC-AA--CAGATCAATTGTG--GA-A--A--TGT-CAA-TTTTGC-A-------ATG---TATTT-TC-GATGG-G-GGC-A-TTA--AAGAATT-ACAT-------AT-GTGCG--AG--CAA--AAA-TT-GA-----A-TTA---C-TACAATC-TGTC----------T---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GCATCG-CAAATTTTCCCGAAATTAC-GAAT-CA--ATT-AATTT----C-AAAT-A-------------CATGTATTTTG--TTTA---A----TTGCATA-TTATTAAG-CTTG-CTC-TCAAAGTGAA-GAACTCGAAT-A-T-TG-CA-TTTT---ACCA---CGCTAA--TGGA-AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAA-GTGT--AAT---GAA-CCAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CGATATA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CACAA-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACTTGTGAGAA-TAGT-TAGTA---AT------TTTC--G-A-T-GAGAGTTGT-TAATTTCTCGCAAACT-AAAGC-A-CTT-TCAG--TTG-AC----TAA-TAGTTTT-A-CTTAT--AAT-GAACTATAGTTT--GGCA-CCCG-AACTCCAc
gi|5 : gtgGAGTTCGC-GT-G-AAAACTACTCAGTATAGTC----------TA-GT--G-CA-GAAGTT-CAGTG-T-ACGC-ATG-CCTAG-T---CAA--CTAGT-GC-ACGCG-AA-CAAAT--TT--TAG--TTT----AGTTCAGA--GA-TAAAAATATG-GCCGT-CT-TA-AA--CAGATCGGTTGTG--GA-A--T--TTT-CAA-TTTTGC-A-------ACG---CATTT-TT-GATGG-C-GGT-A-TGG--GAGAATT-ACAA-------AT-GTACC--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------T---------CG-------CG-T-TAAC--CG--T-GACCT-C-CG-GGATCG-CAAATTTCCCCGAA-----------------T-AATTT----C-AAGT-A-------------C-----TTTTAT-TTTT---A----TTGCA-A-TTAGTATG-CTTG-CTC-TCCAAGTGAA-GAACTCGGTT-G-T-TG-CA-TTTT---ACCA---TGCT-A--AGGATAAGA--AT--TAAC-TGTAA-AACA-GTG------GTGTAAATCA-GTGT--AGT---GAA-CTTAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAAGTT-T-CG---TCA-TACAT-TCTTC-AAATT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACTTA--CGTTT-C-C-A-T-TT-GTC-C-----G-CCA-TCTT-GAATTA-G-A--TCACTA-GT-TCGAATGAGAA-TAGT-TAGTA---ATATTGATTTTC--G-A-C-TAGACTTTT-TCACTTCCGGCAAACT-AAAAC-A-CAT-TATT--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
gi|6 : --TTT----AGTTCAAA--AA-TAAAGATATG-GCTGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TTT-TAA-TTTTGC-A-------ACG---TATTT-TC-AATGG-C-GGC-A-TTG--AAGAATT-GCAT-------AT-GTACT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAGTT-TGTC----------T---------CT-------TG-T-TTAA--CA--T-GTTCT-C-CG-GAATCG-CAAATTTTCCCGAATTTAC-GAAT-CA--TTT-AATTT----C-AAGT-A-------------G-----TTTGTT-TTTT---A----TTGCA-A-TTATTATG-CTTG-CTC-CCC-AGTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCC---CACT-A--T----CATC--AT--TCATGGGTAA-GAAA-GCG------GTGTAAATGA-GTGT--AGT---GAA-CAAAG-AGTA---CAGTA-AACATG-AA-TC-CC-TTTG-TAATTT-C-TG---TCA-TATAT-TCTTC-AAAAT-TAATCTA-TGC-T-TGTAGTT-C-AG-------GGCCTA--CATTT-CAC-A---CT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGTGAGAA-TAGT-TAGTA---AT------TTTT--G-A-C-TAGACTTGT-TTACTTCCTGCAAACT-AAAGC-A-CGT-ACTG--GTGAAC----T-A-TAGTTTT-A-CTT-T--TGT-G-ACTATAG-TT--GGCA-CCCG-AACT
gi|7 : tGAGTTCGC-GT-GCTTAAC-A------ATAGTC----------TA-GTTGG-CC-GGAGTT--AGT--T-ACGC-GTA-TCTAGCT---CAA--CTACA-GC-A-GTG-AA-CAACG--TT---AGATTTT----CGATCAGA--AA-ATAAAATATG--CCGT-CT-TC-AAGACAGATCGATTGTG--AA-A--T--TGT-CA-----------------------CATTT----AA--------------A--AAGAAT--ACAA-------AT-GTATT--CG--CAT--AAA-CT-GA-----A-CAA---C-TACAATT-GGTC----------CTTGAAGCGACT-------CG-T-TACCCACG--TAGTTCTAC-CGAGAATC--TAAATTT-CCCGAAA--AC-GAAT-CATTTTT-AATTT----T-AAGTAA-------------C-----TTTTTA-TTTT---A----TTGCA-ATTTATCAAGCCTTGAATC-TCCAGGTAAA-AAACTCAATTGG-T-TG-CA-TTTT---ACCAACCCACG-A--CGG------------------CTAA-AACA-GTG------GTG-AAATAA-TTGA--AATCTCGAA-CAAA----TA---CAGAA-AACACG-CA-CC-CT-TCTG-TAATTT-T-TGTGCTCA--ATATCTCTTC-AAAAT-CAATCTA-TGC-T-
gi|8 : tgGAGTTCGC-GT-G-CTAAC-A------ATAGTC----------TA-GT--G-CG-GAGGTT-TAGTG-T-ACGC-GTA-TCTAG-T---CAA--CTACA-GC-ACGTG-AA-CAACG--TT--TAG--TTT----AGTTCAGA--AA-TAAAA-TATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--AA-AA-T--TGT-CA-----------------------CATTT--------------------A--AAAAAAT-ACAT-------AT-GTATT--CG--CAT--AAA-CT-GA-----A-CAA---C-TACAATT-GGTC----------C---------CTGAGCGATCG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTTTAATTT----T-AAGT-AAC-----------T-----TTTTAT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-ATC-TCCAGGTAAA-AAACTCAATT-G-T-TG-CA-TTTT---ACCA---CACT-------G-AGG-------------GTAA-AACA-GTG------GTGAAAATAT-ATGA--AAT---GAA-CCAAG-ATTA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-TGTG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-cttgt
gi|9 : tgGAGTTCGC-GT-G-GTAACTA-------TAGTC----------TA-GT--G-CG-GAGGTT-TAGTG-T-ACGC-ATA-TCTAG-T---CAA--CTAGT-GC-ACGTG-GA-CAAAG--TT--TAG--TTT----AGTGCAGA--AA-T-AAAATATG-ACCGT-CT-TC-AA--CAGATCGATTGTGA-AA-A--T--TGT-CCA-TTTTGC-A-------ACG---CATTT-TC-ATTTG-T-GGC-A-TTG--AAAAATT-ACAT-------AT-GTATT--CG--TAT--AAA-TT-GAACGTCA-CAA---C-TACAATT-GGTC----------C---------CT-------CG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT----T-AAGT-AGTTTTTTTTCCTCT-----TTTTCT-TTTT---A----TTGCA-A-TTATCAAA-TTTcttgt
blockSeqs : C T C CTCAGTA C A TG G AT AT G . C . C TTA . G . A A TTAGAT GAAC TT G GAA . . . A GA GAAA T AA AA A AT C ACAACAC TTA A G CAA A . T A T A TCTTGTAA . CT ATC . T . ACGTC G ACC . GG TTCTTTACGTCTT T A CA . A A T A . ATT . . TT T CAAC AGTTTTTTTTCCTCT TTC AAA . T T T C A . . G G C G T TAA ACC ATTGGA AATA . G . A . T AT TA CTC C A GATTATA T G A T . G A G TGC C C A . T G C AG . G CACCGTC . C A CT A A ACCCC . . T . C AC C . G . A ATATTGATTT CA . A A A GC A A . . TA TATA G . A . A AA A A T . C .
blockSeqs : . . . CATGTA . . . . TT T . . . . . . . . . . . TTTAG . . . AAT . . . T . GAA . A . . A . C . . G TTG . . T A G . T . TT A . C . . . . . T CTTGAAGCGACT . . . . . . . . . ATT . . . . TT ACATGTA CT . . . T C . . . . . . . . . . . ATGGGT TA . . . . . T T . . A T GAATTA . . . . . . . . . . . . . . . C AG . . G . A . CG T . . . . . . . . . . C . . TCGGGAG . . . . A T . . . . C . A . . . . . . . T . . .
blockSeqs : . . . A . . . . G T . . . . . . . . . . . TGTAG . . . AAT . . . . . AG . . . . A . . . . . CT . . T A T . C . TT G . . . . . . . T CCTGAGCGAT . . . . . . . . . TTT . . . . T AGCA CT . . . . C . . . . . . . . . . . AATGGG GA . . . . . T A . . . A TACAA . . . . . . . . . . . . . . . C AG . . . . T . TT T . . . . . . . . . . G . . ACAATT . . . . A C . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . A T . . . . . . . . . . . TTTAG . . . GAT . . . . . GA . . . . A . . . . . AT . . T A A . T . CG A . . . . . . . T CCTGAT . . . . . . . . . ATT . . . . C AACT AT . . . . C . . . . . . . . . . . ATAGGT GA . . . . . A G . . . C GGTCA . . . . . . . . . . . . . . . . AG . . . . T . C T . . . . . . . . . . T . . ATAGT . . . . A T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . G T . . . . . . . . . . . TTTAG . . . AAT . . . . . GG . . . . A . . . . . TG . . T G A . A . CC C . . . . . . . G CTT . . . . . . . . . ATT . . . . C AGC TT . . . . T . . . . . . . . . . . AATGGA GA . . . . . G T . . . C GATCA . . . . . . . . . . . . . . . . AG . . . . C . T . . . . . . . . . . . G . . AATTA . . . . A C . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . G T . . . . . . . . . . . TTTAG . . . AAT . . . . . GG . . . . A . . . . . GG . . G A G . T . CT C . . . . . . . T TAT . . . . . . . . . TT . . . . C AAC TA . . . . T . . . . . . . . . . . AAGGAT GA . . . . . T A . . . C GATCA . . . . . . . . . . . . . . . . AG . . . . T . T . . . . . . . . . . . G . . ATTT . . . . A T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A C . . . . . . . . . . . TTTA . . . TA . . . . . GG . . . . A . . . . . CG . . T A G . A . TT C . . . . . . . T CCT . . . . . . . . . AT . . . . C AA AT . . . . T . . . . . . . . . . . AAGGG GA . . . . . T A . . . T GAGTA . . . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . . . . G . . ATAG . . . . A C . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A T . . . . . . . . . . . TAT . . . AT . . . . . GA . . . . A . . . . . CG . . T A G . T . TT C . . . . . . . T TCT . . . . . . . . . A . . . . T AC CT . . . . C . . . . . . . . . . . ACGG TC . . . . . T A . . . A GATTA . . . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . . . . T . . ATTT . . . . A T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . C T . . . . . . . . . . . TTT . . . AT . . . . . GA . . . . . . . . . . TG . . . A G . T . TT C . . . . . . . G TCG . . . . . . . . . A . . . . T AG G . . . . C . . . . . . . . . . . AT G . . . . . A A . . . A TA . . . . . . . . . . . . . . . . . . . . . C . T . . . . . . . . . . . T . . TAGT . . . . . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . T . . . . . . . G TCT . . . . . . . . . . . . . . T . . . . . . C . . . . . . . . . . . G . . . . . . . T . . . C . . . . . . . . . . . . . . . . . . C . T . . . . . . . . . . . T . . ATTT . . . . . T . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . G CCT . . . . . . . . . . . . . . . . . . . . . . . . C . T . . . . . . . . . . . . . . ATTT . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : ********** ** TTTAG****** AAT A** CT** ** T* ** C***** AGC****************** **** ANNGGN*** ** ****** GATCA**** AG ******* ** C* ATTT********* **
originalCons : GAGTTCGC-GT-G-TTAACTA------ATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTG--AAGAATT-ACAT-------AT-GTATT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT----C-AAGT-A-------------C-----TTTTNT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGCT-A--TGGG-AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CNAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGNGAGAA-TAGT-TAGCA---ATA--G--TTTC--G-A-C-TAGACTCGT-TCACTTCCGGCAAACT-AAAGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
finalCons : GAGTTCGC-GT-G-TTAACTA------ATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAGTTTAG------TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTGA--AGAATT-ACAT-------AT-GTACT--CG--CAT--AAA-TT-GA-----A-CAA---C-TACAATTT-GTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTTC-----AAGTAGC------------------TTTTNT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCA---CGCTANNGGN---AAGA--AT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CNAAGATCA----CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTTC-AC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGNGAGAA-TAGT-TAGCAATTT---------TC--G-A-C-TAGACTCGT-TCACTTCCGGCAAACT-AAAGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
Alignments
lowQualScore : 3333333 1111111111 111 1111111 1111 11111111 33333333333333333333333333333 333333333333333333 111111 111111111 1 11 1111111 1 11111111111111111
lowQualScore : 3 3 3 1111111 7777777777 3 44 3 77 33 3 3 3 3 3 555 44 3 3 3 7 66666666666 7777 44 3 222 3 3 3 6 44 0 9999 3 77 44 3 66 3 4444444 555 3 6 0000 3 3 1 555 1 3 33333333 3 0 555 1 44 6 3 88888 3 555 3 88 00000000000000000000000000000 3 3 44 44 3 3 3 3 3 666 3 3 55 3 444 111111111111111111 5555 666 7777 3 7 1 3 3 3 3 3 3 3 3 3 666 7777 66666 55 3 3 3 000000 2 44 55 666 7 1 333333333 7 7 4 4 4 4 3 7 666 3 3 3 3 3 3 2 55 3 3 6666666 44 44 3 888 2 3 77777 3 3 6 3 3 44 6 3 7 3 3 3 77777777777777777 3 3 3 3 0 33 3 3 3 3 77 7777 6 3 3 3 3 44 3 3 8 55 4 4
lowQualScore : . . . ....... .......... . .. . .. .. . . . . . ... .. . . . . ........... .... .. . ... . . . . .. . .... . .. .. . .. . ....... ... . . .... . . . ... . . ........ . . ... . .. . . ..... . ... . .. ............................. . . .. .. . . . . . ... . . .. . ... .................. .... ... .... . . . . . . . . . . . . ... .... ..... .. . . . ...... . .. .. ... . . ......... . . . . . . . . ... . . . . . . . .. . . ....... .. .. . ... . . ..... . . . . . .. . . . . . . ................. . . . . . .. . . . . .. .... . . . . . .. . . . .. . .
lowQualScore : 6 6 6 3333333 9999999999 3 66 3 55 88 3 3 3 3 3 888 66 6 6 6 3 44444444444 1111 66 3 222 1 1 1 2 66 2 8888 3 99 66 3 66 3 2222222 888 3 7 8888 3 3 1 000 6 3 55555555 3 1 000 8 66 7 3 33333 3 888 3 44 33333333333333333333333333333 3 3 66 66 3 1 1 1 6 444 6 6 00 6 555 000000000000000000 2222 444 7777 6 3 6 3 6 6 6 6 6 6 6 6 444 0000 55555 00 3 3 3 555555 4 66 00 444 3 0 777777777 3 3 0 0 0 0 6 3 444 6 3 3 3 1 1 3 99 1 1 2222222 22 33 1 333 3 1 77777 1 1 2 1 1 22 7 3 5 3 3 3 22222222222222222 3 3 3 2 8 44 3 3 3 3 99 1111 7 3 3 3 3 22 1 1 0 55 0 0
consensus : GAGTTCGC-GT-G-TTAACTA------ATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTG--AAGAATT-ACAT-------AT-GTACT--CGCAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT-C-AAGTA---G------------C-TTTTT-T-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCACGCTA--NNGGNAAG-AAT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CNAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGNGAGAA-TAGT-TAAC-A------AT--TN-----TC-G-AC-TAGACTCGT-TCACTTCCGGCAAACT-AAAGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
Reference ( family-2102 ) : GAGTTCGC-GT-G-TTAACTA------ATAGTC----------TA-GT--G-CG-GAAGTT-TAGTG-T-ACGC-ATG-TCTAG-T---CAA--CTAGT-GC-ACGTG-AA-CAAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TGT-CAA-TTTTGC-A-------ACG---CATTT-TC-GATGG-C-GGC-A-TTG--AAGAATT-ACAT-------AT-GTACT--CGCAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT-C-AAGTA---G------------C-TTTTN-T-TTTT---A----TTGCA-A-TTATCAAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCACGCTA--NNGGNAAG-AAT--TAAT-TGTAA-AACA-GTG------GTGTAAATAN-GTGT--AAT---GAA-CNAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CAC-A-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGNGAGAA-TAGT-TAGC-A------AT--TT-----TC-G-AC-TAGACTCGT-TCACTTCCGGCAAACT-AAAGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
gi|1 : GAGTTCGC-GT-G-TTGACTA-------TAGTCACTGAGCTCTCA-GT--G-CA-GAAGTT-TAGTG-TTACGC-ATGCTCTAG-T---CAAGACTAGT-GCCACGTG-AAACAAAGATTTACTAG--TTT----AATTCAGA--AA-TAAA--TATGCGCCGTTCTATC-AA--CAGATTAATTGTA--GA-A--T--GGT-AAA-TTT-GC-A-------ACG---CATTT-TC-GATGG-C-TGT-ACTTGCTAATAATT----T-------ATCGTATTTACGAATCAAAA-TTTGA-----A-CAA---TATACAATT--GTC----------T---------TT-------CG-T-TAAC--CAGCT-GTTCT-C-GC-GGATCGTCTACTCACCCCGAAATTGCCGAATTCA--TTT-AATTTTC-AACAA---G------------C-TTTTT-C-TTTT---AAACATTCCA-A-TTAC---G-CTTC-CTCATCCAAGTAAAAGAAC-CGCTT-G-T-TG-CA-TTTT---ACCAGTCAA--TTGGAAAT-AATTATAAT-TGTAAGAACA-ATGCGCTATACGTAAATAT-GTGT--AAT---CAA-CAAAT-A-CAAACTAGAATAACACGCCA-CC-CCTTTTA-TAACTT-TATG---TCA-TATAT-TCTTC-AAAATCCAATCTA-TGT-TATGT--TGCC-AGA------AACCTGCCCGTTTATAC-A-A-TT-GTC-C-----GCCCATTCTTAGAACTAGG-A--CCACTAGGTAACGCG-GTGAATTAAT-TAAC-AT-----ATAGTC-----AC-GTAC-TA-ACTCGT-TCACTCGCGGCAACTC-AAAGC-CTCCTGTCGA--GCGAAC----T-GCTGGTTTG-AGCTT-T---GT---ACTATAG-TTTAGTCA-CCCGAAACTCCA
gi|10 : tg-GCCGT-CT-TC-AA--CAGATTAATTGTA--GA-A--T--GTT-CAA-TTTTGC-A-------ACG---TCTTT-TC-GATGG-C-TGT-A-TTG--AATAATT-ACGT-------AT-TTACG--ATCAA--AAT-TT-GA-----A-CAA---C-TACAATT-TGTC----------C---------TT-------CA-T-TAAC--AG--T-TTTCT-C-CG-GGATCG-TAAATTTCCCCGAAATTGC-GAAT-CA--TTT-AATTT-C-AACAA---G------------T-TTTTC-T-TTTTAAAA----TTGCA-A-TT---AAG-CTTG-CTC-TCCAAGTAAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCACGTCA--TTGGAAAT-AAT--TAAT-TGTAA-CACA-ATG------GTGTAAATAT-GTGT--AAT---CAA-CAAAT-ACAA---CAGAATAATACG-C
gi|11 : TA------AT--TC----------TA-GT--G-CG-GAAGTT----------CGT-----------T---CAA--CTAGT-GC-AT-TG-AA-CA------------------------TCAGA--AA-TAAAGAAATT-G-CGT-CC-TCAAA--CAG-TAG-TTGT----ATA--T--TGTACA---TTTGC-AACAACACACG---TAGTT-TCGGATGG-CAAGC-A-TTG---AGAATCAATATCTTGTAAAT-GCACT--AGAAT--GCA-TT-GA-----AGCAG---C-TAC-ATT-TGTCTTCTTTACGTC---------TT-------TG-T-T-AC--TG--T-G-TCT-CTCG-GGA
gi|12 : aAAT-TGTAA-AACA-GTG------GCCTAAAGGA-ATGA--AAT---AGA-CTAA----------AGAT-AAC---------------TG-AAAGTT-T-TG---TCA-TATAC-CC----------CG-------GC-T-TGTAGTA-C-AG-------AAGCTA--CTTTT-CAC-G-C-TGAGTC-C-----G-CCA-CCTTTGAACTA-G-A--CCACTA-GT-ACTTGGGAGAA-TAGC-TAGT-A------AT--TT-----TC-G-AC-TAAACCTGT-TCACTTCTGGTAAACT-AAAGCAA-TAT-TTGA--GTGAACTATAT-A-TAGTTTT-A-CTT-T--TGT-G-TCTATAG-CT--GGCA-CATG-AACCCCAagaatgtcgtcgaatagctgttcaagcagtaatttatgtt
gi|13 : GAGTTCGCCGTTG-TTAACTC-------CAGTC----------TAAGT--G-CATGAAGTT-TAGTG-T-ACGC-TTG-TCTAG-T----AA---TAGTGGC-ACGTG-AA-CAAAG------TAT--TTT----AGTTCAGA--AAGTAAATA-AGG-GC--T-CT-TC-AA--CA-ATTAATTTT----A-A--TAATGT-CAATTTTTGC-AC------ACG---CATTT-TC-GATGG-A-TGCAA-TTG---ATAATT-AC----------C-GTATT--ATGAT--CAATTT-GA-----A-CAAACCC-TACAATTGGGTC----------T---------AT-------CGTT-TAAC--AG--T-GTTCT-C-CG-G
gi|14 : ggtgATTAAG-CTTG-CTC-TCCAAGCTAA-GAACTTGATC-G-T-TG-CA-TTTC---ACCACGCTA--TGGGTAAG-ATT--TAAT-TGTAA-AACT-GTG------GTGTAAATTG-GTGT--AAT---GAA-TAAAG-GTCA---CAGAA-AACACG-CA-TC-CC-TTTG-TAGTTT-T-TG---TCA-TA-------------------------GC-T-TTTAGTG-T-AG-------AACCTA--CGTTT-AAT-ACT-TT-GTC-C-----G-CCA-TCTT-GAACAA-G-G--CCACTA-GT-ACGTGCGAGAA-TAGT-TAacg
gi|15 : ta-TTTCC-GAAAT---AT-TA-CAC-TCTGT--TG-C-AG-------AACCTG--CGTTT-TAC-A-T-TTTGTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGGGAGAA-TAGT-TAAC-A------AT--AG-----TC-G-AC-TAGACTCGT-CCACTTCCGGCAAACT-AATGC-A-CGT-TCGG--GTGAAC----T-A-TAGTTTT-A-CTT-A--AGT-G-ACTATAG-TT--GGAA-CCTG-AACTCtt
gi|16 : taaaTG-C-AGG------AACCTG--CGTTT-TAC-A-T-TTTGTC-CACCCCG-CCA--CTT-GAA-TA-G-A--CCAC-A-GT-ACGTGTGAGA--TAGTATAAC-A------AT--AG------C-G-AC-TAG-CTCGC--CACTTC-GGCAAACT--AAGC-A-CGT-TCGGC-GTGAAC----T-A-TAGTTTA-A-CTT-A--AGT-G-A-TATAGTTT--GGAA-CCTG-AACTC
gi|17 : ttccccgaacatattacactctgtT-C-TG---TTA-TATAT-CATTC-AAAAC-CAATCTC-TAC------------------------CCTA--CGTA--CAC-A-CGTT-GTC-T-----A-CCA-TCTT-GAAGTA-A------------------GGGAGAA-TAGT-TAGT-A------AT--TT-----TC-G-AG-TAAACTCAT-TCTCTTCCGGCAAACT-ATAGC-G-CGT-TCGT--GTGAAC----T-A-TAGTTTT-A-CAT-T--A-T-G-Aaca
gi|18 : cATCTA-TGCGT-TGT--TG-CGAG-------AAACTG--GGTTT-TAC-A-T-TTTGTCAT-----A-CGA-TCTT-GAACTA-GCA--TTATGA-GT-A--TGGGAGAA--AGT-TAAC-A-------T--AG-----TG-A-AC-TAG-CT-GTGCCCCTTCCGG-AAACT-AA-GC-A--GT-TAGG--GTGA-C----T-A-TAGTTGT-A-C-T-T--AGT-G-A
gi|19 : GAGATCGC-GT-G-TTAACTA-------TAGTT----------TA-GT--G-CA-GGAGTT-TAATG-T-ACGC-ATG-TCTAA-TTTATAG--CTAGT-TC-ACTCGAAA-TGAAA--TT--T----TTTGAACAATTCAAATTAA-TAAA----------GT-CT-TC-A
gi|2 : GAGTTCGT-GT-G-GTAACTT------ATAGTC----------TA-GT--G-CG-GAAGGTATAGTG-T-ACGC-A-G-TCTAG-T---CAA--C-AGT-GC-ACGTG-AA-CGAAG--TT--TAG--TTT----AGTTCAGA--AA-TAAAAATATG-GCCGT-CT-TC-AA--CAGATCGA-TGTGAAAA-A--T--TGT-CCA-TTTTGC-A-------ACGTTATATTTATCGGATGGTT-GGC-A-TTG--AAAAATT-ATGC--------T-ATATT--CGAAT--AAACTT-GA-----A-CAA---C-TACAA-T-TGTC----------C---------CT-------CG-TACGAT--CG--T-GTTCT-C-CG-AGGTCG-C-AATTTCCCCAAAA---------------TT-AATTT-T-AAGTA---G------------C-TTTTT-TCTTTT---A----TTGCA-ATTTGTCAAG-CTTG-CGC-TCC-AGTAAA-GAACTC-ATT-G-TCTG-CATTTTT---ACCACGCTA--ATGGGAAG-AAT--TAAT-TAT-A-AACA-GTA------GGGAAAATAT-GTGT--AAT---GAACCCAAGAATTA---CA-AA-AACACG-CA-CCTCT-TTTG-TAATGCAT-GG---TCACTATA--TCTTCAAAAAT-CAATCTATTGC-TCTGT--TG-C-AGCACCGTCGACCTG--CGCTT-TAC-T-T-TT-GTC-C-----G-CCA-TC-T-GAACTA-G-AACCCACTACGT-ACGCGGTAGAA-TAGT-TGAC-A----------TCGGGAGTC-G-ACATAGACTCGC-CCACTTCCGGCAAACT-CAAGC-A-CGT-TCGGTAGTGAAC----T-A-TAGTTGT-A-CTT-T--AGTAG-ACTA-AG--T--GGCA-GCCG-tattcaaaacagtttcttatctgggcgcataaa
gi|20 : gtgCC-C-CG-GGATCG-CAAATTTCCCCGAA-TTAC-GAAT-AA--TTT-ATTTT-C-GAGTA---A------------------T-T-TTTT---A----TTGGA-A-TTATCAAG-CTTG-ATT-CCCAAGTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ATCACGCCA--TAGGTAGG-AAT--GAAT-TGGAA-AACA-GTcatcc
gi|21 : AAC-A------AT--TT-----CCAG-AC-TAGACTTGT-TCACTTTCGGCAAACT-AAAGC-A-CGT-TCGG--GCGAAC----T-A-TAGTTTT-A-CTT-T--AGC-G-ACT
gi|22 : actaAGTTCGC-GT-G-TC--CT--------TAGCC----------TA-GT--G-CTTGAAGTT-TCGTA-T-ACGCCATG-TCTGG-T---CAA--Cgacaacagagatcggaactgc
gi|23 : gtaaTAGTG-C-AG-------AAC-----------------T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCAC
gi|24 : --AGT-G-ACTATAG-TT--AGCA-CCCG-AACTCCA
gi|3 : GAGTTCGC-GT-G-TGAACTA-------TAGTCC---------TA-GT--GGTG-GAGGTT-TAGTGGT-ACGC-ATG-TCTAG-T---CAA--CTAGA-G--ACGCG-AAACAAAG--TG--TAG--TTT----AGTTCAGA--A--TAAAA-TATG-GCCGT-CT-TCTAC--CAGAT-GATTGTG--AA-AAAT--TGT-CCA-TTTTGCCA-------GCG---TATTT-TC-GATGG-T-GGC-A-T-G--AAAAATT-ACA-------------------------AAA-TT-GA-----A--AA---C-TACA-CT-GGTT----------C---------CTGAT----CG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAAT-AC-GAAT-CA--TTT-AATTT-TTAAGTA---G------------CATTTTC-T-TTTT---A----TTGCA---TTATCAAG-CTTG-CTT---CAGGTAAA-GAACTCGATT-GGT-TGGCA-TTTTTAAACCACGCTA--AGGGAAAATAAT--TAAT-TGTAA-AACAAGTA------GTGGAAATAATATGTTAAAT---GAAACCAAG-ATTATA-CAGAA-AGCACGGCAACT-CC-TTTGGTAGTTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-TCTGT--TG-C-AG-------AACCTG--CGTTT-TAC-ATT-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTG-GAGAA-TAGT-TAACAA------AT--TA-----TC-G-AC-TAG-CTCGT-CCACTTCCGGCAAACTAAAAGC-A--GT-TCGG--GTGAAC----TGA-TAGTTTTAA-CTT-TAAAGT-G-A--ATAG-TT--GGCACCCCG-AACTCCAc
gi|4 : gtgGAGTTCGC-GT-G-TTCACTACATGT-ATAGTC----------TA-GT--A-CA-GCAGTT-TAGTA-T-ACGC-ATT-CCTAG-T---CAA--CTAGT-TC-GTGTG-AA-CAAAG--TT--TA---CTT----AGT-----------------ATG-GCCGT-CT-TC-AA--CAGATCAATTGTG--GA-A--A--TGT-CAA-TTTTGC-A-------ATG---TATTT-TC-GATGG-G-GGC-A-TTA--AAGAATT-ACAT-------AT-GTGCG--AGCAA--AAA-TT-GA-----A-TTA---C-TACAATC-TGTC----------T---------CT-------CG-T-TAAC--CG--T-GTTCT-C-CG-GCATCG-CAAATTTTCCCGAAATTAC-GAAT-CA--ATT-AATTT-C-AAATACATG------------T-ATTTT-G-TTTA---A----TTGCATA-TTATTAAG-CTTG-CTC-TCAAAGTGAA-GAACTCGAAT-A-T-TG-CA-TTTT---ACCACGCTA--ATGGAAAG-AAT--TAAT-TGTAA-AACA-GTG------GTGTAAATAA-GTGT--AAT---GAA-CCAAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-T-TG---TCA-TATAT-TCTTC-AAAAT-CGATATA-TGC-T-TGTAGTG-C-AG-------AACCTG--CGTTT-CACAA-T-TT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACTTGTGAGAA-TAGT-TAGT-A------AT--TT-----TC-G-AT-GAGAGTTGT-TAATTTCTCGCAAACT-AAAGC-A-CTT-TCAG--TTG-AC----TAA-TAGTTTT-A-CTTAT--AAT-GAACTATAGTTT--GGCA-CCCG-AACTCCAc
gi|5 : gtgGAGTTCGC-GT-G-AAAACTACTCAGTATAGTC----------TA-GT--G-CA-GAAGTT-CAGTG-T-ACGC-ATG-CCTAG-T---CAA--CTAGT-GC-ACGCG-AA-CAAAT--TT--TAG--TTT----AGTTCAGA--GA-TAAAAATATG-GCCGT-CT-TA-AA--CAGATCGGTTGTG--GA-A--T--TTT-CAA-TTTTGC-A-------ACG---CATTT-TT-GATGG-C-GGT-A-TGG--GAGAATT-ACAA-------AT-GTACC--CGCAT--AAA-TT-GA-----A-CAA---C-TACAATT-TGTC----------T---------CG-------CG-T-TAAC--CG--T-GACCT-C-CG-GGATCG-CAAATTTCCCCGAA-----------------T-AATTT-C-AAGTA----------------C-TTTTA-T-TTTT---A----TTGCA-A-TTAGTATG-CTTG-CTC-TCCAAGTGAA-GAACTCGGTT-G-T-TG-CA-TTTT---ACCATGCTA--AGGATAAG-AAT--TAAC-TGTAA-AACA-GTG------GTGTAAATCA-GTGT--AGT---GAA-CTTAG-ATCA---CAGAA-AACACG-CA-CC-CC-TTTG-TAAGTT-T-CG---TCA-TACAT-TCTTC-AAATT-CAATCTA-TGC-T-TGTAGTG-C-AG-------AACTTA--CGTTT-C-C-A-T-TT-GTC-C-----G-CCA-TCTT-GAATTA-G-A--TCACTA-GT-TCGAATGAGAA-TAGT-TAGT-AATATTGAT--TT-----TC-G-AC-TAGACTTTT-TCACTTCCGGCAAACT-AAAAC-A-CAT-TATT--GTGAAC----T-A-TAGTTTT-A-CTT-T--AGT-G-ACTATAG-TT--GGCA-CCCG-AACTCCA
gi|6 : --TTT----AGTTCAAA--AA-TAAAGATATG-GCTGT-CT-TC-AA--CAGATCGATTGTG--GA-A--T--TTT-TAA-TTTTGC-A-------ACG---TATTT-TC-AATGG-C-GGC-A-TTG--AAGAATT-GCAT-------AT-GTACT--CGCAT--AAA-TT-GA-----A-CAA---C-TACAGTT-TGTC----------T---------CT-------TG-T-TTAA--CA--T-GTTCT-C-CG-GAATCG-CAAATTTTCCCGAATTTAC-GAAT-CA--TTT-AATTT-C-AAGTA---G--------------TTTGT-T-TTTT---A----TTGCA-A-TTATTATG-CTTG-CTC-CCC-AGTGAA-GAACTCGATT-G-T-TG-CA-TTTT---ACCCCACTA--TC----AT-CAT--TCATGGGTAA-GAAA-GCG------GTGTAAATGA-GTGT--AGT---GAA-CAAAG-AGTA---CAGTA-AACATG-AA-TC-CC-TTTG-TAATTT-C-TG---TCA-TATAT-TCTTC-AAAAT-TAATCTA-TGC-T-TGTAGTT-C-AG-------GGCCTA--CATTT-CAC-A---CT-GTC-C-----G-CCA-TCTT-GAACTA-G-A--CCACTA-GT-ACGTGTGAGAA-TAGT-TAGT-A------AT--TT-----TT-G-AC-TAGACTTGT-TTACTTCCTGCAAACT-AAAGC-A-CGT-ACTG--GTGAAC----T-A-TAGTTTT-A-CTT-T--TGT-G-ACTATAG-TT--GGCA-CCCG-AACT
gi|7 : tGAGTTCGC-GT-GCTTAAC-A------ATAGTC----------TA-GTTGG-CC-GGAGTT--AGT--T-ACGC-GTA-TCTAGCT---CAA--CTACA-GC-A-GTG-AA-CAACG--TT---AGATTTT----CGATCAGA--AA-ATAAAATATG--CCGT-CT-TC-AAGACAGATCGATTGTG--AA-A--T--TGT-CA-----------------------CATTT----AA--------------A--AAGAAT--ACAA-------AT-GTATT--CGCAT--AAA-CT-GA-----A-CAA---C-TACAATT-GGTC----------CTTGAAGCGACT-------CG-T-TACCCACG--TAGTTCTAC-CGAGAATC--TAAATTT-CCCGAAA--AC-GAAT-CATTTTT-AATTT-T-AAGTA---A------------C-TTTTT-A-TTTT---A----TTGCA-ATTTATCAAGCCTTGAATC-TCCAGGTAAA-AAACTCAATTGG-T-TG-CA-TTTT---ACCAACCCACGACGGC----------------TAA-AACA-GTG------GTG-AAATAA-TTGA--AATCTCGAA-CAAA----TA---CAGAA-AACACG-CA-CC-CT-TCTG-TAATTT-T-TGTGCTCA--ATATCTCTTC-AAAAT-CAATCTA-TGC-T-
gi|8 : tgGAGTTCGC-GT-G-CTAAC-A------ATAGTC----------TA-GT--G-CG-GAGGTT-TAGTG-T-ACGC-GTA-TCTAG-T---CAA--CTACA-GC-ACGTG-AA-CAACG--TT--TAG--TTT----AGTTCAGA--AA-TAAAA-TATG-GCCGT-CT-TC-AA--CAGATCGATTGTG--AA-AA-T--TGT-CA-----------------------CATTT--------------------A--AAAAAAT-ACAT-------AT-GTATT--CGCAT--AAA-CT-GA-----A-CAA---C-TACAATT-GGTC----------C---------CTGAGCGATCG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTTTAATTT-T-AAGTA---A------------C-TTTTTAT-TTTT---A----TTGCA-A-TTATCAAG-CTTG-ATC-TCCAGGTAAA-AAACTCAATT-G-T-TG-CA-TTTT---ACCACACTG--AGG-----------------GTAA-AACA-GTG------GTGAAAATAT-ATGA--AAT---GAA-CCAAG-ATTA---CAGAA-AACACG-CA-CC-CC-TTTG-TAATTT-TGTG---TCA-TATAT-TCTTC-AAAAT-CAATCTA-TGC-T-cttgt
gi|9 : tgGAGTTCGC-GT-G-GTAACTA-------TAGTC----------TA-GT--G-CG-GAGGTT-TAGTG-T-ACGC-ATA-TCTAG-T---CAA--CTAGT-GC-ACGTG-GA-CAAAG--TT--TAG--TTT----AGTGCAGA--AA-T-AAAATATG-ACCGT-CT-TC-AA--CAGATCGATTGTGA-AA-A--T--TGT-CCA-TTTTGC-A-------ACG---CATTT-TC-ATTTG-T-GGC-A-TTG--AAAAATT-ACAT-------AT-GTATT--CGTAT--AAA-TT-GAACGTCA-CAA---C-TACAATT-GGTC----------C---------CT-------CG-T-TACC--CG--T-GTTCT-C-CG-AGATCG-CAAATTTCCCCGAAATTAC-GAAT-CA--TTT-AATTT-T-AAGTA---GTTTTTTTTCCTCT-TTTTC-T-TTTT---A----TTGCA-A-TTATCAAA-TTTcttgt