lowQualScore : 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111111111111111 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111 222222222222222222222222222 111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 1 1 11 55555 1 3333333 777777777777777777777777 1 5555555555555 222 111 33333333 11111 3333 1 4444 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 11 1111111 11 2 1 3333333 11 1 11 22222 00000000 111111111111111111111111111 1 11 5555555555 33333333 666666 33 3333333333 888888888888888888 1 555555555555555555555555 1 2 1 33333333333 1 1 333333333333333333333333333333333333333333333333333333333333333 1 333 1111 11 55555555555555 1111 222222 11 1111
lowQualScore : 22 5 7 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 5 6 6 6 5 6 22 88888 6 6 6 7 1111111 6 777777777777777777777777 5 4444444444444 666 77 5 3 8 444 00000000 44444 4444 1 3 8 0 7 7 6 3 9 2222 2 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444 00 88 3 5555555 88 3 3 3 7777777 88 1 3 00 11111 4 00000000 6 111111111111111111111111111 4 6 0 88 8888888888 7 7 44444444 6 6 333333 77 5555555555 111111111111111111 5 000000000000000000000000 0 0 3 33333333333 3 3 3 111111111111111111111111111111111111111111111111111111111111111 0 555 777 1 6666 88 00000000000000 99 77 4 9 8 999 8888 4 7 8 0 333333 11 8888
lowQualScore : .. . . ..................................................................................................... . . . . . . . .. ..... . . . . ....... . ........................ . ............. ... .. . . . ... ........ ..... .... . . . . . . . . . .... . ...................................................................................... .. .. . ....... .. . . . ....... .. . . .. ..... . ........ . ........................... . . . .. .......... . . ........ . . ...... .. .......... .................. . ........................ . . . ........... . . . ............................................................... . ... ... . .... .. .............. .. .. . . . ... .... . . . . ...... .. ....
lowQualScore : 00 0 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 0 00 00000 0 0 0 0 0000000 0 333333333333333333333333 0 6666666666666 888 44 6 2 0 000 00000000 88888 8888 0 0 0 8 3 3 0 3 0 5555 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33 33 7 0000000 33 7 3 3 0000000 33 0 3 33 33333 7 00000000 0 000000000000000000000000000 0 0 5 00 3333333333 3 3 00000000 0 0 000000 00 0000000000 000000000000000000 5 000000000000000000000000 5 0 3 33333333333 3 3 7 888888888888888888888888888888888888888888888888888888888888888 0 000 000 0 5555 33 33333333333333 22 77 0 3 3 000 2222 6 5 8 8 000000 00 8888
consensus : TTAGAATAGGTGTGCCACCAGCCTGTGCTTGGAACACCAAAACTATATTGTATGTTCTCAAAGCCGATTCGGTGAAAC-TGTC----GACTTCATGACACG-AACATCA--ACATATATGCAGATGACACGCAAATCTACATTGTGGTCGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGTGCTTTTTCCT--CCCAAGCAGAAAGTGAGTGATGTTCCAGATTTTGAACCNGNGTATTTGGCAATAACGCNATTTGTGAATTTATGAATGTAC-TTTGTTAAAAATCTTGG-ATTTTATT--ATTTTGACAAAACC--TTGAATATGGAAAAACAGTGC-ACCT---CAACCATA-A-GNACGTTTTA--TGAAC--GTAGAAACATCAGCCGCATTCG-ATCTTACATTTCGGAGGATGCCTGCAAA-ACCCTCGTCAACTTATACNCTTGTCACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCGTTAACAAGCAGCNGACGGNAAACACTTTACTTGTAAGCTG-CAGAAAGT--TNAA-ANACA-GCAGCG--CGGNT-ATAACT-CGTACGATAA----AAAGCGAAC--ACA-TTACNCCGGT--TT-GAANGATTCNC----CACTGGCTCCCGGTGGAATAAATGTGTTGATACATAAGTCCAGTACAAANTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGC--GATA--TTACTGATCTTGTGAACATTTGNNACCTCTCCAAGCTCGTTCCCTCCGTTCGAAAGAATCAGTGCGATTAAAAGTTCCAAAAACCAGAGAGGTAGCTACATACCGGNAACCGCNGCCGGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAANTGAGAAATGTGGCCATTCATTATATACNTTTNNNGGCGTTTTAAAAAGGAGATTTAAAAACTTAT----CTTTTT-AAACAAG--CATTTGACCGTTAACTGTAAATACT---ATCATGTACTGGA----TG---AGTT--TTGACAT-CTTTNACGATACACTTAACTCTATTTTATTAATCTGCATNTTTTGTTT------TATATTGTA--TATATG--TTTTATT
Reference ( gi|1 ) : TTGAAATCGGAGTGCCCCAAG-----GTTTGGACC-CCGGG--TGTACTGTGTGTTTTCCTAACCTAT-CGG--AAACATCTCTTAGAAC--CATCGCATGCAATATCACGACA---ATGCAGATGACACTCAAATATGCATCGTGATAGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGAATGCTTTTTTTTTTCCCAAGCAAAGAGCAAAAGATGTTCCAGATTTTGAACTTTCGT--TTGACAGTAACGCT---------------------C-TTTGTTCAAAATCTTGGGATTCTATTA-ATTTTGACAAAACA--TTAAATATGGAAAAACAGTGC-ACCT---CAACCTCA-A-ATATGTTTTA--TGAAC-TGTAGAAACATCAGCTGCATTCG-ATTTTACATTTCGGAGGATGCCCGCAAA-ACTCTCATCAACT----CGCTTG--------------------CTGGA-------AACTATA-TGCTTTATGG-CAT----------CT----GT--------------TAAGCTG-AAGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGAAGA----AAAGCGAAC--ATA-TTACCCCAGT--TTAGAAAGAT--------CACTGGCTCCCGGTAAAAT--------------A------------AAATTTTTGTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGC--TATACCTTACTGATCTTATGAATATTT-TT---TCTCC-TACTCGTTTGCTCCGTTTGAAAGATTTACTGCGTTTAAAAGTTCCAAAAACCAGAACTGTA---ACATA-CAGAA---GTGGCCA-TTTCGA-TTTTGCTGCCTT----C-TCTATCTGGAACTC-TTTA-CCCGTGAAACTGAGAA--GT--CC--TCAT------CCTTTGTTG-----------AG--G-TATACAA----GT----CTTTTT-AAACAAT--CATTTGACTATTAACTGTAAATATT---GTCATAGACTTGA----TG---ATTT--TTGACAT-TTTTAAGGAAACACCTAACTCTACTTTATTAATCCGCATTTTTTGTTT------TATATTGTA--TATACA--TTTTATT
gi|2 : TTAGAATAGGTGTGCCACCAGCCTGTGCTTGGAACACCAAAACTATATTGTATGTTCTCAAAGCCGATTCGGTGAAAC-TGTC----GACTTCATGACACG-AACATCA--ACATATATGCAGATGACACGCAAATCTACATTGTGGTCGAACC
gi|10 : cTGGGTGCTTTTTCCT--CCCAAGCAGAAAGTGAATGATGTTCCAGATTTTGAACCTAAGTATTTGACAATAACGCTATTTGTGAATTTATGAATGTACATTTGTTAAAAATCTTGA-ATTTTATT----TTTGACAAAACT--TTAAATATGGAAAAACAGTGC-ACCT---CAACCatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgcttcattttgacagaaccctttgcattggaaaaacatgcaatcgcaataacaaggtcgtgctacttgaacatgtcggaaattgggcgtatccgcagtgtaccttcaggtttgcatgtaagtacgctcgtcaacttatactcttgttacatctcgactggaccacagcaaccgtcttgatttatggccattaacaagcagctgacggataagctgcaagagagtaacaaaacacaggcagcgtccgactttattacgtgcgaaaacgtgaaatcggacctatataacaccggtacttaatgatgcacctaacactggcttc
gi|13 : CAGAAAGTAAGTGATGTTCCAGATTTTGAACTAGCGT--TTGGCAATAACATA---------------------C-TTTGTTAAAAACATTTGGATTTTA------TTTGACAAAACT--TTAAATATAGAataaga
gi|11 : -TTTGTTAAAAATCTTGG------ATTGCATTTTGACAAAACC--TT-----T----AAACAGTGC-ACCT---CAACCATA-ATACATGTTTTA--TGAAC--ATTGAAACATCAGCCGCATTCA-AT
gi|2 : ccagtctttcaagcttcttgtgaaactatacctacattaatTTC-ATTTTGACAGAACCCTTTGCAT-TGGAAAAACA-TGCAATCG---CAATAACA-A-GGTCGTGCTACTTGAACATGTCGGAA-ATTGGGCGTATCCGCAGTGTAC-CTTCAG-GTTTGCATGTAAGTACGCTCGTCAACTTATACTCTTGTTACATCTCGA---------CTGGACCACAGCAACCGTCTTGATTTATGGCCATTAACAAGCAGCTGACGGA--------------TAAGCTGCAAGAGAGTAACAAA-ACACAGGCAGCGTCCGACT--TTATTACGTGCGAAAACGTGAAATCGGACCTATA-TAACACCGGTACTT--AATGATGCACCTAACACTGGCTTC
gi|16 : cttagaataggtgtgccaccagcctgtgcttggaacaccaaaactatattgtatgttctcaaagccgattcggtgaaactgtcgacttcatgacacgaacatcaacatatatgcagatgacacgcaaatctacattgtggtcgaaccatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgcCAAAACC--TTGAATATGGAGAAACAGTGC-ACCT---CAACCATG-A-GAACATT-----TGAA----TAGAAACATCAGCCGCATTCA-ATTTTA
gi|3 : gtgAAAAACAGTGT-ACTTGAACAACCTAAGA-ACATGTTTTA--TGAAC-ATTAGAAACATGAGCCGCATTCA-ATCCTACATTTCGGAGGATATCTGCAAA-ACCCTCATCAATT----CGCTTGTCACTTTTCTACTAGACTACCTGAA-------AACTAGA---CTTTATGA-TGT----------CA----GTAAACACTTTACTTGTAAGCTG-CAGAAAGT--TCAA-AATCC-ACAGCA--CGGGT-ATAACT-CGTACGATGT----AAAGCGAAC--ACA-TTACCCCAGT--TTTGAAGGATTCTC----CAGTGGTTCCCGGTAGAAT--------------ATAAGTCCAGTACAAAATCTTATCTTCGTATACAAAGCAGTATACAAAGCAGTGAACAATCAAGCTCCTC--GATA------TGATCTTGTGAACATTT-AA---TCTCC-AGCTCGTTCCCTCCGTTCGAAAGAATCAGTGCGATTAAAAGTTCCAAAA-CCAG----------------CGGTA---GTTGTCG-TTTCGA-CTTTGCAGCCTC----C-ACTCTCTGGAGCAC-TTTA-CCCGTCAAATGAAGAAATGT--CCATTCATTATATACCTTTCAAA-----------AG--GATTTAAAAACTTAT----CTTTTT-AAACAG---CATTTGATTGTTAACTG-AAATATT---ATCATGCACTGGA----AG---G-TT--TTGACAT-CTTTAACGATGCA-CTA----TATTTTATTAATCTGCAT
gi|18 : ttatatattaatTAGAAACATCATCTGCATTCG-ATCTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAA
gi|9 : tAAGCTG-CAGAATGT--TTAACGTACA-GCAGCA--CGGATGATAACT-CGTACGATAA----AAAGCGAAC--ACAGTTA-TCCAGT--TTGGAAAAATTTC-----CTCTGGCGCACAGTGGAATAAATGTGTTGATACA------------AAATTCTTTTCTTC--ATA----------TAGAAAGCACTGAATAGCCATTCTCCGCGATACACATTACTGATCTgtacctgtgacct
gi|4 : aA----------TACAA--CAG--AATAATCAAGCTCCGC--AATA-CTTACTGATCTTGTGAACATTTGTTACCTCTCCAAACTCGTTT--TCC-----AAAGA-----TGCA---------TCCAAAAACCAGAGAGGTAGCTACATACCGGAAACCGCAGCCAGTTTCGACTTTTGCTGCCTTCCTGC-TCCCTCTGGAACTCATTTACCCCGTGAAACTGAGAA--ATGGCC---CAT------CATTTGTTGGCGTTTTAAAAAGGAG-TTTAAAA----ATTTTCCTTTTTAAAACAAGCACATTTGACCGTTAACTGT---TATTAAAGT----GACTGGA----TG---ATATGGTGGACAT-TTTTAAAAGAAC-----------CCTTATT-----GCATATTT--TTT------TATATTGTGACTATATG--CTTTATT
gi|22 : aaTCGA-TTTGGCTCCCCC----CCTCTCTCTGGAACTC-TTTA-ACCGTGAAAGTGA
gi|7 : T----TTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACT---CTCATGTACTGGA-----A---AGTT--TTCACAT-CTTTTACGATATACTTATCTCTATTTTATTAATCTGCATGTTTTGTTTTACATGTATATTGTA--TATGTC--TTTTATT
gi|8 : atggatttaaaaacttaT----CTTTTT-AAACAAG--CATTTGAAGGTTAACTGTAAATACT---ATCATGTACTAGA-----A---AGTT--CTGACATCTTCTTATGATACACTTAAC---AGTTTATTATTCTGCACCTTTTGTTT------TAGATTGTA--TATGTA--TTTTATTgctaatgcttgtcaaacacactagagctttactttaagtatattgttctatacaaattaccgtactgtgttgtattgttgtat
gi|20 : ggatttaaaaacttaTTAACTGTAAATACT---ATCATGTACTGCA----T----AGTT--TTGATAT-CTTTAAGGAAACGCTTAATTCTAgtcatacttgtcaagcgcattagagctttatttaaagtatattgcgctattcaaattatcttattgta
gi|5 : CTGTAAATACT---ATCATGTACCGGAGTACTGGAAAGTT--GTAACAT-CTTTTATGATACACTTAACTCTATTTTATTAATCTGCATGTTTTGTTT------TATATTGTA--TATATGTCTTTTATTa
gi|15 : aattTTTATTAATCTGTATTTTTTGTTT------TATATTATA--TATATA--TTTTATTgccaatgcttgtcaagcgcattagagctttacttttttcaaaatagtatactgcgcgctatacaaattattgtattgtattgtaattctatataatagatcccctcaaaaaatatggataactt
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): ATCTCGACAAAGTCCCTTACGATGGAAAAAACAATGCAGTTCCGTTGCAAAGATGCATGTTACATGCATGCTACGTCGCGAATAGAGGCACATCGAGCCGTTTAAAACTGAAAGATGCTTGTAAAATTCTGTGTGAATTCTCTCGTTACATCGGGAGGCTGGACTATAGCGCGTTAACGCTTTTACTGTATGGAATTAACAGAAAGCAGTTCACAAACTCCAAGCGAAATTCAAAACACGGCTG
Unaligned ( gi|12 ): AATTTTATCAATTGATTGATACTGTGTATATCTTTTATTGCCCATGCTTGTCAAGTGCATTAAAAATATACTATAAGTATATTGCGCTAAACAAATGAAAGCATTGTATTATTTGGTA
Unaligned ( gi|14 ): ACTCTTATCTACTTATTATATGTTTTTGTTTTTTAATATTGTATAAGGATATATTTTTTATTGCATGCTTGTCAAGCGATTAGAGTATTGTTTT
Unaligned ( gi|17 ): ACTTATAAATTGTGCATTTTTATATGTTCTCGGATTTACTACATAACTTGAGAATAGGAATTCATGGACATCATAATCAGTC
Unaligned ( gi|19 ): TTATATTGCATATGTCTTTTATTGCCAATGCTTGTCAAGCGCATTAGAACTTTACTTTAGGTTTCA
Unaligned ( gi|21 ): TTTTATTAATCTGCATTTTTTTTTGCTTTATATTGTACAGAATATATTTATTGCCCATGCTTG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111 11111111111111111111111111 111111111111111111111111111111111111111111
lowQualScore : 22222 1 11 1 11 2 4444 11 2 22 222 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22 22 4444444444444444444444444444444 1 1 22222 111 11 11 222 1 4444 4444444444444444444 222222 99999999999999999999999999999999999 1 11 1 1 111 2 2222 11 1 1 2 33333333 88888888888888888888888888 4444444444 3333333 555555 11 11 22222 1 666666666666666666666666 22 1 2222 1 1 1 333333333333333333333333333333333333333333 11 333333333 111111 111111 1111
lowQualScore : 3 4 3 2 66666 3 5 88 77 2 5 88 0 2 2222 88 2 0 77 111 2 2 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 77 0 0 6666 22 0 1111111111111111111111111111111 0 0 0 88888 99 6 3 1 6 111 3 6 1 11 3 11 000 6 6 3 3 0 0 2 4444 1 1 1 7777777777777777777 444444 22222222222222222222222222222222222 0 33 1 0 1 0 555 1 0 4 1111 33 0 33 2 0 0 1 11111111 0 88888888888888888888888888 1 1 6 3333333333 3 3 0 6666666 3 000000 99 88 44444 6 7 333333333333333333333333 11 44 0 1111 0 0 0 1 777777777777777777777777777777777777777777 3 0 8 0 11 4 5 222222222 77 5 1 5 5 3 1 3 1 888 1 666666 111111 0000
lowQualScore : . . . . ..... . . .. .. . . .. . . .... .. . . .. ... . . . .............................................................................................................. .. . . .... .. . ............................... . . . ..... .. . . . . ... . . . .. . .. ... . . . . . . . .... . . . ................... ...... ................................... . .. . . . . ... . . . .... .. . .. . . . . ........ . .......................... . . . .......... . . . ....... . ...... .. .. ..... . . ........................ .. .. . .... . . . . .......................................... . . . . .. . . ......... .. . . . . . . . . ... . ...... ...... ....
lowQualScore : 0 0 0 5 00000 0 5 00 00 5 5 00 0 5 5555 55 5 0 55 555 5 5 5 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 7 7 3333 77 7 2222222222222222222222222222222 0 0 8 44444 22 3 2 0 7 777 5 7 0 00 8 00 444 7 7 2 2 0 2 0 7777 0 0 0 5555555555555555555 000000 00000000000000000000000000000000000 0 88 0 0 0 0 888 0 0 0 2222 88 0 55 0 0 0 0 55555555 7 00000000000000000000000000 0 0 7 8888888888 2 2 2 0000000 2 777777 33 77 33333 0 3 000000000000000000000000 77 00 0 2222 0 0 0 0 000000000000000000000000000000000000000000 8 8 0 8 00 6 7 666666666 99 7 0 3 4 6 7 6 4 888 0 444444 000000 7777
consensus : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT-TTTGACAATAACGCT--TTGTGAA-CTAT--ACGTACA-----TTTGTTAAAAAT-CTTGG-ATTTTATTA-TTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC--GT-AGAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTCACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCGTTAACAAGCAGCTGACGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACTCGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATAAA------------------------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGAT----AC-TTACTGATCTTGTGAACATTTG---CCTCTCCAAGCTCGTTC-CTCCGTTCGAAAGA-TCA-TGCG-TTAAAAGTTCCAAAAACCAGAG--GTA---ACATACCGG-AA--GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAAT-T--CC--TCAT------CCTTT------GTT---AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-ACTGGA----TG---AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
Reference ( family-2101 ) : TTAGAATAGGTGTGCCACCAGCCTGTGCTTGGAACACCAAAACTATATTGTATGTTCTCAAAGCCGATTCGGTGAAAC-TGTC----GACTTCATGACACG-AACATCA--ACATATATGCAGATGACACGCAAATCTACATTGTGGTCGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGTGCTTTTTCCT--CCCAAGCAGAAAGTGAGTGATGTTCCAGATTTTGAACCNGNGTATTTGGCAATAACGCNATTTGTGAATTTATGAATGTAC------TTTGTTAAAAAT-CTTGG-ATTTTATTA-TTTTGACAAAACC--TTGAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC--GT-AGAAACATCAGCCGCATTCG-ATCTTACATTTCGGAGGATGCCTGCAAA-ACCCTCGTCAACTTATACNCTTGTCACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCGTTAACAAGCAGCNGACGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TNAA-ANACA-GCAGCG--CGGNT-ATAACTCGTACGATAA----AAAGCGAAC--ACA-TTACNCCGGT-TT-GAANGATTCNC----CACTGGCTCCCGGTGGAATAAATGTGTTGATACATAAGTCCAGTACAAANTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGAT----A--TTACTGATCTTGTGAACATTTGNNACCTCTCCAAGCTCGTTCCCTCCGTTCGAAAGAATCAGTGCGATTAAAAGTTCCAAAAACCAGAGAGGTAGCTACATACCGGNAACCGCNGCCGGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAANTGAGAAATGTGGCCATTCATTATATACNTTTNNNGGCGTTTTAAAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACCGTTAACTGTAAATACTATCATGT-ACTGGA----TG---AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATG--TTTTATT
gi|1 : TTGAAATCGGAGTGCCCCAAG-----GTTTGGACC-CCGGG--TGTACTGTGTGTTTTCCTAACCTAT-CGG--AAACATCTCTTAGAAC--CATCGCATGCAATATCACGACA---ATGCAGATGACACTCAAATATGCATCGTGATAGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGAATGCTTTTTTTTTTCCCAAGCAAAGAGCAAAAGATGTTCCAGATTTTGAACTTTCGT--TTGACAGTAACGCT---------------------C------TTTGTTCAAAAT-CTTGGGATTCTATTAATTTTGACAAAACA--TTAAATATGGAAAAACAGTGCA-CCT---CAACCTCAA-ATAT--GTTTTA--TGAACT-GT-AGAAACATCAGCTGCATTCG-ATTTTACATTTCGGAGGATGCCCGCAAA-ACTCTCATCAACT----CGCTTG
gi|1 : TAAGCTGA-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACTCGTACGAAGA----AAAGCGAAC--ATA-TTACCCCAGT-TTAGAAAGAT--------CACTGGCTCCCGGTAAAATAAA--------------------------ATTTTTGTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCTAT----ACCTTACTGATCTTATGAATATTT----TTTCTCCTA-CTCGTTTGCTCCGTTTGAAAGATTTACTGCGTTTAAAAGTTCCAAAAACCAGAACTGTA---ACATACAG--AA--GTGGCCA-TTTCGA-TTTTGCTGCCTT----C-TCTATCTGGAACTC-TTTA-CCCGTGAAACTGAGAAGT----CC--TCAT------CCTTT------GTT--------GAGGTATACAA----GTCTTTTT-AAACAAT--CATTTGACTATTAACTGTAAATATTGTCATAG-ACTTGA----TG---ATTT--TTGACATTTT-TAAGGAAACACCTAACTCTACTTTATTAATCCGCA---TTTTTTGTTT------TATATTGTA--T---ATACA--TTTTATTctggaaactatatgctttatggcatctgttaagctgaagaaagttcaaacacagcagcacgggtgataactcgtacgaagaaaagcgaacatattaccccagtttagaaagatcactggctcccggtaaaataaaatttttgtcttcgtatatacaaagcagtgaataatcaagctccgctataccttactgatcttatgaatattttttctcctactcgtttgctccgtttgaaagatttactgcgtttaaaagttccaaaaaccagaactgtaacatacagaagtggccatttcgattttgctgccttctctatctggaactctttacccgtgaaactgagaagtcctcatcctttgttgaggtatacaagtctttttaaacaatcatttgactattaactgtaaatattgtcatagacttgatgatttttgacatttttaaggaaacacctaactctactttattaatccgcattttttgttttatattgtatatacattttatt
gi|10 : ttgaaatcggagtgccccaaggtttggaccccgggtgtactgtgtgttttcctaacctatcggaaacatctcttagaaccatcgcatgcaatatcacgacaatgcagatgacactcaaatatgcatcgtgatagagcccactgatgacttaggaaatgtttcaggcgtcctttcttagtaactgtctcacgggcatcagatcatgaatgtgtactaatcttctaaagttaaaccaagatacaacagaatgaatgcttttttttttcccaagcaaagagcaaaagatgttccagattttgaactttcgtttgacagtaacgctctttgttcaaaatcttgggattctattaattttgacaaaacattaaatatggaaaaacagtgcacctcaacctcaaatatgttttatgaactgtagaaacatcagctgcattcgattttacatttcggaggatgcccgcaaaactctcatcaactcgcttgctggaaactatatgctttatggcatctgtTGGGTGCTTTTTCCT--CCCAAGCAGAAAGTGAATGATGTTCCAGATTTTGAACCTAAGTATTTGACAATAACGCTATTTGTGAATTTATGAATGTACA-----TTTGTTAAAAAT-CTTGA-ATTTTAT---TTTTGACAAAACT--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-G
gi|11 : TTGTGAAACTAT--ACCTACATTAATTTTGTTAAAAAT-CTTGG-ATTGCATT----TTGACAAAACC--TT-----T----AAACAGTGCA-CCT---CAACCATAATACAT--GTTTTA--TGAAC--AT-TGAAACATCAGCCGCATTCA-ATa
gi|13 : ccagtctttcaagcttcCAGAAAGTAAGTGATGTTCCAGATTTTGAACTAGCG--TTTGGCAATAAC---------------------ATAC------TTTGTTAAAAACATTTGG-ATTTTA-----TTTGACAAAACT--TTAAATATAGA
gi|15 : TTTTATTAATCTGTA---TTTTTTGTTT------TATATTATA--T---ATATA--TTTTATT
gi|16 : CAAAACC--TTGAATATGGAGAAACAGTGCA-CCT---CAACCATGA-GAAC--ATT-----TGAA----T-AGAAACATCAGCCGCATTCA-ATTTTAgcccatgcttgtcaaatgcattagagctttaagtatgttgcgct
gi|18 : gtgT-AGAAACATCATCTGCATTCG-ATCTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAA
gi|2 : tTTAGAATAGGTGTGCCACCAGCCTGTGCTTGGAACACCAAAACTATATTGTATGTTCTCAAAGCCGATTCGGTGAAAC-TGTC----GACTTCATGACACG-AACATCA--ACATATATGCAGATGACACGCAAATCTACATTGTGGTCGAACCgtacctgtgacct
gi|2 : cTCA-TTTTGACAGAACCCTTTGCAT-TGGAAAAACA-TGCAATCG---CAATAACAA-GGTC--GTGCTACTTGAACATGT-CGGAA-ATTGGGCGTATCCGCAGTGTAC-CTTCAG-GTTTGCATGTAAGTACGCTCGTCAACTTATACTCTTGTTACATCTCGACT---------GGACCACAGCAACCGTCTTGATTTATGGCCATTAACAAGCAGCTGACGGA--------------TAAGCTGCAAGAGAGTAACAAA-ACACAGGCAGCGTCCGACT-TTATTACGTGCGAAAACGTGAAATCGGACCTATA-TAACACCGGTACT-TAATGATGCACCTAACACTGGCTTCatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgcttcattttgacagaaccctttgcattggaaaaacatgcaatcgcaataacaaggtcgtgctacttgaacatgtcggaaattgggcgtatccgcagtgtaccttcaggtttgcatgtaagtacgctcgtcaacttatactcttgttacatctcgactggaccacagcaaccgtcttgatttatggccattaacaagcagctgacggataagctgcaagagagtaacaaaacacaggcagcgtccgactttattacgtgcgaaaacgtgaaatcggacctatataacaccggtacttaatgatgcacctaacactggcttc
gi|20 : cttagaataggtgtgccaccagcctgtgcttggaacaccaaaactatattgtatgttctcaaagccgattcggtgaaactgtcgacttcatgacacgaacatcaacatatatgcagatgacacgcaaatctacattgtggtcgaaccatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgctTTAACTGTAAATACTATCATGT-ACTGCA----T----AGTT--TTGATATCTT-TAAGGAAACGCTTAATTCTA
gi|21 : TTTTATTAATCTGCATTTTTTTTTGCTT------TATATTGTA--CAGAATATA---TTTATTa
gi|22 : TCGA-TTTGGCTCCCCC----CCTCTCTCTGGAACTC-TTTA-ACCGTGAAAGTGAgcccatgcttg
gi|3 : AAAAACAGTGTA-CTTGAACAACC-TAA-GAACATGTTTTA--TGAAC--ATTAGAAACATGAGCCGCATTCA-ATCCTACATTTCGGAGGATATCTGCAAA-ACCCTCATCAATT----CGCTTGTCACTTTTCTACTAGACTACCTGAA-------AACTAGA---CTTTATGAT-GT--------------CAGTAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-AATCC-ACAGCA--CGGGT-ATAACTCGTACGATGT----AAAGCGAAC--ACA-TTACCCCAGT-TTTGAAGGATTCTC----CAGTGGTTCCCGGTAGAATA--------------TAAGTCCAGTACAAAATCTTATCTTCGTATACAAAGCAGTATACAAAGCAGTGAACAATCAAGCTCCTCGAT----A--T----GATCTTGTGAACATTTAA----TCTCCA-GCTCGTTCCCTCCGTTCGAAAGAATCAGTGCGATTAAAAGTTCC-AAAACCAG----------------CGGTA---GTTGTC-GTTTCGA-CTTTGCAGCCTC----C-ACTCTCTGGAGCAC-TTTA-CCCGTCAAATGAAGAAATGT--CCATTCATTATATACCTTTC-----------AAAAG--GATTTAAAAACTTATCTTTTT-AAAC-AG--CATTTGATTGTTAACTG-AAATATTATCATGC-ACTGGA----AG----GTT--TTGACATCTT-TAACGATGCAC-TA----TATTTTATTAATCTGCA---T
gi|4 : ttatatattaatA----------TACAA--CAG--AATAATCAAGCTCCGCAAT----AC-TTACTGATCTTGTGAACATTTGTTACCTCTCCAAACTCGTT-------TTCCAAAGA-----TGCA---------TCCAAAAACCAGAGAGGTAGCTACATACCGGAAACCGCAGCCAGTTTCGACTTTTGCTGCCTTCCTGC-TCCCTCTGGAACTCATTTACCCCGTGAAACTGAGAAA--TGGCC---CAT------CATTTGTTGGCGTTTTAAAAAGGAG-TTTAAAAATTTTCCTTTTTAAAACAAGCACATTTGACCGTTAACTGT---TATTA--AAGTGACTGGA----TG---ATATGGTGGACATTTT-TAAAAG-------AACCC----TTAT-----TGCA---TATTT--TTT------TATATTGTGACT---ATATG--CTTTATT
gi|5 : aaCTGTAAATACTATCATGT-ACCGGAGTACTGGAAAGTT--GTAACATCTT-TTATGATACACTTAACTCTATTTTATTAATCTGCA---TGTTTTGTTT------TATATTGTA--T---ATATGTCTTTTATT
gi|7 : aattGATTTAAAAACTTATTTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTCTCATGT-ACTGGA-----A---AGTT--TTCACATCTT-TTACGATATACTTATCTCTATTTTATTAATCTGCA---TGTTTTGTTTTACATGTATATTGTA--T---ATGTC--TTTTATTgccaatgcttgtcaagcgcattagagctttacttttttcaaaatagtatactgcgcgctatacaaattattgtattgtattgtaattctatataatagatcccctcaaaaaatatggataactt
gi|8 : atgGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGAAGGTTAACTGTAAATACTATCATGT-ACTAGA-----A---AGTT--CTGACATCTTCTTATGATACACTTAAC---AGTTTATTATTCTGCA---CCTTTTGTTT------TAGATTGTA--T---ATGTA--TTTTATTgctaatgcttgtcaaacacactagagctttactttaagtatattgttctatacaaattaccgtactgtgttgtattgttgtat
gi|9 : gAAGCTGC-AGAATGT--TTAACGTACA-GCAGCA--CGGATGATAACTCGTACGATAA----AAAGCGAAC--ACAGTTA-TCCAGT-TT-GGAAAAATTTC----CTCTGGCGCACAGTGGAATAAATGTGTTGATACA------------AAATTCTTTTCTTC--ATA----------TAGAAAGCACTGAATAGCCATTCTCCGCGATACACA--TTACTGATCTgtcatacttgtcaagcgcattagagctttatttaaagtatattgcgctattcaaattatcttattgta
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATCTCGACAAAGTCCCTTACGATGGAAAAAACAATGCAGTTCCGTTGCAAAGATGCATGTTACATGCATGCTACGTCGCGAATAGAGGCACATCGAGCCGTTTAAAACTGAAAGATGCTTGTAAAATTCTGTGTGAATTCTCTCGTTACATCGGGAGGCTGGACTATAGCGCGTTAACGCTTTTACTGTATGGAATTAACAGAAAGCAGTTCACAAACTCCAAGCGAAATTCAAAACACGGCTG
Unaligned ( gi|12 ): AATTTTATCAATTGATTGATACTGTGTATATCTTTTATTGCCCATGCTTGTCAAGTGCATTAAAAATATACTATAAGTATATTGCGCTAAACAAATGAAAGCATTGTATTATTTGGTA
Unaligned ( gi|14 ): ACTCTTATCTACTTATTATATGTTTTTGTTTTTTAATATTGTATAAGGATATATTTTTTATTGCATGCTTGTCAAGCGATTAGAGTATTGTTTT
Unaligned ( gi|17 ): ACTTATAAATTGTGCATTTTTATATGTTCTCGGATTTACTACATAACTTGAGAATAGGAATTCATGGACATCATAATCAGTC
Unaligned ( gi|19 ): TTATATTGCATATGTCTTTTATTGCCAATGCTTGTCAAGCGCATTAGAACTTTACTTTAGGTTTCA
Alignments
lowQualScore : 1111111111111111111111111111111111 111111111111111111111111
lowQualScore : 22222 1 11 1 11 1 2222 11 1 11 222 11 33 0000000000000000000000000000000000 1 1 222 111 11 11 222 1 222222 4444444444444444444 222222 777777777777777777777777777777777777 1 11 1 1 11 1 1 2222 11 1 1 2 33333333 111111111111111111111111 4444444444 3333 555555 11 3333 5555555 3333 11 11 66666666666666666 11 1 2222 1 1 1 666666666666666666666666666666666666666 11 333333333 111111 111111
lowQualScore : 1 1 1 1 66666 1 5 88 22 1 5 88 5 1 4444 88 2 5 77 111 1 1 1 88 1 77 9999999999999999999999999999999999 0 0 0 0 888 99 4 3 1 6 111 3 6 1 11 3 11 000 6 6 3 3 0 0 0 444444 3 1 1 7777777777777777777 444444 888888888888888888888888888888888888 0 33 0 0 0 0 33 0 5 0 1 1111 33 0 22 0 0 1 00000000 777777777777777777777777 7 1 6 3333333333 3 3 0 0000 111111 99 7777 4444444 3333 7 88 88 22222222222222222 44 44 0 1111 0 0 0 0 777777777777777777777777777777777777777 3 3 1 8 0 11 5 222222222 77 5 1 5 5 3 1 3 1 888 1 666666 111111 888
lowQualScore : . . . . ..... . . .. .. . . .. . . .... .. . . .. ... . . . .. . .. .................................. . . . . ... .. . . . . ... . . . .. . .. ... . . . . . . . ...... . . . ................... ...... .................................... . .. . . . . .. . . . . .... .. . .. . . . ........ ........................ . . . .......... . . . .... ...... .. .... ....... .... . .. .. ................. .. .. . .... . . . . ....................................... . . . . . .. . ......... .. . . . . . . . . ... . ...... ...... ...
lowQualScore : 0 0 0 0 00000 0 5 00 00 0 5 00 5 0 0000 55 5 0 55 555 0 0 0 55 0 00 8888888888888888888888888888888888 0 0 8 8 888 22 2 2 0 7 777 5 7 0 00 8 00 444 7 7 2 2 0 2 2 000000 7 0 0 5555555555555555555 000000 000000000000000000000000000000000000 0 88 2 0 2 0 88 2 0 0 0 2222 88 0 88 0 0 2 55555555 000000000000000000000000 3 0 7 8888888888 2 2 2 0000 000000 33 0000 3333333 0000 3 33 33 77777777777777777 33 00 0 2222 0 0 0 2 333333333333333333333333333333333333333 8 2 0 0 8 00 7 666666666 99 7 0 3 4 6 7 6 4 888 0 444444 000000 000
consensus : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCG--TTTGACAATAACGCT--TTGTGAA-CT-AT--AC-TACATT-----TGTTAAAAAT-CTT-GGATTTTATT-ATTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC--GT-AGAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTNACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCATTAACAAGCAGCTGNCGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATAC---TTACTGATCTTGTGAACATTTG---NCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TC-A-TGCG-TT-AAAAGTTCCAAAAACC--AGAG--GTA---ACATAC-GGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAAT--CC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-ACTGGA----TG---AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
Reference ( family-2101 ) : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT-TTTGACAATAACGCT--TTGTGAA-CT-AT--ACGTACATT-----TGTTAAAAAT-CTT-GGATTTTATT-ATTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC--GT-AGAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTCACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCGTTAACAAGCAGCTGACGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATAC---TTACTGATCTTGTGAACATTTG---CCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TC-A-TGCG-TT-AAAAGTTCCAAAAACC--AGAG--GTA---ACATACCGGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAAT-TCC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-ACTGGA----TG---AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
gi|1 : TTGAAATCGGAGTGCCCCAAG-----GTTTGGACC-CCGGG--TGTACTGTGTGTTTTCCTAACCTAT-CGG--AAACATCTCTTAGAAC--CATCGCATGCAATATCACGACA---ATGCAGATGACACTCAAATATGCATCGTGATAGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGAATGCTTTTTTTTTTCCCAAGCAAAGAGCAAAAGATGTTCCAGATTTTGAACTTTCG--TTTGACAGTAACGCT--C---------------------TT-----TGTTCAAAAT-CTTGGGATTCTATTAATTTTGACAAAACA--TTAAATATGGAAAAACAGTGCA-CCT---CAACCTCAA-ATAT--GTTTTA--TGAACT-GT-AGAAACATCAGCTGCATTCG-ATTTTACATTTCGGAGGATGCCCGCAAA-ACTCTCATCAACT----CGCTTG
gi|1 : TAAGCTGA-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGAAGA----AAAGCGAAC--ATA-TTACCCCAGT-TTAGAAAGAT--------CACTGGCTCCCGGTAAAATA-A------------A---------A--TTTTTGTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCTATACC--TTACTGATCTTATGAATATTT----TTTCTCCTA-CTCGTTTGC-TCCGTTTGAAAGA-TTTACTGCG-TTTAAAAGTTCCAAAAACC--AGAACTGTA---ACATAC-AGAA---GTGGCCA-TTTCGA-TTTTGCTGCCTT----C-TCTATCTGGAACTC-TTTA-CCCGTGAAACTGAGAAGT--CC--TCAT------CCTTTGTT--------------GAGGTATACAAG----TCTTTTT-AAACAAT--CATTTGACTATTAACTGTAAATATTGTCATAG-ACTTGA----TG---ATTT--TTGACATTTT-TAAGGAAACACCTAACTCTACTTTATTAATCCGCA---TTTTTTGTTT------TATATTGTA--T---ATACA--TTTTATTctggaaactatatgctttatggcatctgttaagctgaagaaagttcaaacacagcagcacgggtgataactcgtacgaagaaaagcgaacatattaccccagtttagaaagatcactggctcccggtaaaataaaatttttgtcttcgtatatacaaagcagtgaataatcaagctccgctataccttactgatcttatgaatattttttctcctactcgtttgctccgtttgaaagatttactgcgtttaaaagttccaaaaaccagaactgtaacatacagaagtggccatttcgattttgctgccttctctatctggaactctttacccgtgaaactgagaagtcctcatcctttgttgaggtatacaagtctttttaaacaatcatttgactattaactgtaaatattgtcatagacttgatgatttttgacatttttaaggaaacacctaactctactttattaatccgcattttttgttttatattgtatatacattttatt
gi|10 : ttgaaatcggagtgccccaaggtttggaccccgggtgtactgtgtgttttcctaacctatcggaaacatctcttagaaccatcgcatgcaatatcacgacaatgcagatgacactcaaatatgcatcgtgatagagcccactgatgacttaggaaatgtttcaggcgtcctttcttagtaactgtctcacgggcatcagatcatgaatgtgtactaatcttctaaagttaaaccaagatacaacagaatgaatgcttttttttttcccaagcaaagagcaaaagatgttccagattttgaactttcgtttgacagtaacgctctttgttcaaaatcttgggattctattaattttgacaaaacattaaatatggaaaaacagtgcacctcaacctcaaatatgttttatgaactgtagaaacatcagctgcattcgattttacatttcggaggatgcccgcaaaactctcatcaactcgcttgctggaaactatatgctttatggcatctgtTGGGTGCTTTTTCCT--CCCAAGCAGAAAGTGAATGATGTTCCAGATTTTGAACCTAAGTATTTGACAATAACGCTATTTGTGAA-TTTATGAATGTACATT-----TGTTAAAAAT-CTT-GAATTTTATT---TTTGACAAAACT--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-G
gi|11 : --TTGTGAAACT-AT--ACCTACATTAATTTTGTTAAAAAT-CTT-GGATTGCATT----TTGACAAAACC--TT-----T----AAACAGTGCA-CCT---CAACCATAATACAT--GTTTTA--TGAAC--AT-TGAAACATCAGCCGCATTCA-ATa
gi|13 : ccagtctttcaagcttcCAGAAAGTAAGTGATGTTCCAGATTTTGAACTAGCG--TTTGGCAATAAC----------------AT--AC-----TT-----TGTTAAAAACATTT-GGATTTTA-----TTTGACAAAACT--TTAAATATAGA
gi|15 : TTTTATTAATCTGTA---TTTTTTGTTT------TATATTATA--T---ATATA--TTTTATT
gi|16 : CAAAACC--TTGAATATGGAGAAACAGTGCA-CCT---CAACCATGA-GAAC--ATT-----TGAA----T-AGAAACATCAGCCGCATTCA-ATTTTAgcccatgcttgtcaaatgcattagagctttaagtatgttgcgct
gi|18 : gtgT-AGAAACATCATCTGCATTCG-ATCTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAAGT-----ACCTGTGACCT
gi|2 : tTTAGAATAGGTGTGCCACCAGCCTGTGCTTGGAACACCAAAACTATATTGTATGTTCTCAAAGCCGATTCGGTGAAAC-TGTC----GACTTCATGACACG-AACATCA--ACATATATGCAGATGACACGCAAATCTACATTGTGGTCGAACC
gi|2 : cTC-ATTTTGACAGAACCCTTTGCAT-TGGAAAAACA-TGCAATCG---CAATAACAA-GGTC--GTGCTACTTGAACATGT-CGGAA-ATTGGGCGTATCCGCAGTGTAC-CTTCAG-GTTTGCATGTAAGTACGCTCGTCAACTTATACTCTTGTTACATCTCGACT---------GGACCACAGCAACCGTCTTGATTTATGGCCATTAACAAGCAGCTGACGGA--------------TAAGCTGCAAGAGAGTAACAAA-ACACAGGCAGCGTCCGACT--TTATTACGTGCGAAAACGTGAAATCGGACCTATA-TAACACCGGTACT-TAATGATGCACCTAACACTGGCTTCatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgcttcattttgacagaaccctttgcattggaaaaacatgcaatcgcaataacaaggtcgtgctacttgaacatgtcggaaattgggcgtatccgcagtgtaccttcaggtttgcatgtaagtacgctcgtcaacttatactcttgttacatctcgactggaccacagcaaccgtcttgatttatggccattaacaagcagctgacggataagctgcaagagagtaacaaaacacaggcagcgtccgactttattacgtgcgaaaacgtgaaatcggacctatataacaccggtacttaatgatgcacctaacactggcttc
gi|20 : cttagaataggtgtgccaccagcctgtgcttggaacaccaaaactatattgtatgttctcaaagccgattcggtgaaactgtcgacttcatgacacgaacatcaacatatatgcagatgacacgcaaatctacattgtggtcgaaccatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgctTTAACTGTAAATACTATCATGT-ACTGCA----T----AGTT--TTGATATCTT-TAAGGAAACGCTTAATTCTA
gi|21 : TTTTATTAATCTGCATTTTTTTTTGCTT------TATATTGTA--CAGAATATA---TTTATTa
gi|22 : TCGA-TTTGGCTCCCCC----CCTCTCTCTGGAACTC-TTTA-ACCGTGAAAGTGAgcccatgcttg
gi|3 : AAAAACAGTGTA-CTTGAACAACC-TAA-GAACATGTTTTA--TGAAC--ATTAGAAACATGAGCCGCATTCA-ATCCTACATTTCGGAGGATATCTGCAAA-ACCCTCATCAATT----CGCTTGTCACTTTTCTACTAGACTACCTGAA-------AACTAGA---CTTTATGA---------------TGTCAGTAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-AATCC-ACAGCA--CGGGT-ATAACT-CGTACGATGT----AAAGCGAAC--ACA-TTACCCCAGT-TTTGAAGGATTCTC----CAGTGGTTCCCGGTAGAATATA------------AGTCCAGTACAAAATCTTATCTTCGTATACAAAGCAGTATACAAAGCAGTGAACAATCAAGCTCCTCGATA--------TGATCTTGTGAACATTTA---A-TCTCCA-GCTCGTTC-CCTCCGTTCGAAAGAATC-AGTGCGATT-AAAAGTTCCAAAA-CC--AGCG--GTA-----------------GTTGTC-GTTTCGA-CTTTGCAGCCTC----C-ACTCTCTGGAGCAC-TTTA-CCCGTCAAATGAAGAAATGTCCATTCATTATATACCTT--TC---------AAAAG--GATTTAAAAACTTATCTTTTT-AAAC-AG--CATTTGATTGTTAACTG-AAATATTATCATGC-ACTGGA----AG----GTT--TTGACATCTT-TAACGATGCAC-TA----TATTTTATTAATCTGCA---T
gi|4 : ttatatattaatA----------TACAA--CAG--AATAATCAAGCTCCGCAATAC---TTACTGATCTTGTGAACATTTGTTACCTCTCCAAACTCGTT--------TTCCAAAG-----A-TGCA----------TCCAAAAACCAGAGAG--GTAGCTACATACCGGAAACCGCAGCCAGTTTCGACTTTTGCTGCCTTCCTGC-TCCCTCTGGAACTCATTTACCCCGTGAAACTGAGAAAT-GGC--CCAT------CATTTGTTGGCGTTTTAAAAAGGAG-TTTAAAAATTTTCCTTTTTAAAACAAGCACATTTGACCGTTAACTGT---TATTA--AAGTGACTGGA----TG---ATATGGTGGACATTTT-TAAAAG-------AACCC----TTAT-----TGCA---TATTT--TTT------TATATTGTGACT---ATATG--CTTTATT
gi|5 : aaCTGTAAATACTATCATGT-ACCGGAGTACTGGAAAGTT--GTAACATCTT-TTATGATACACTTAACTCTATTTTATTAATCTGCA---TGTTTTGTTT------TATATTGTA--T---ATATGTCTTTTATT
gi|7 : aattGATTTAAAAACTTATTTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTCTCATGT-ACTGGA-----A---AGTT--TTCACATCTT-TTACGATATACTTATCTCTATTTTATTAATCTGCA---TGTTTTGTTTTACATGTATATTGTA--T---ATGTC--TTTTATTgccaatgcttgtcaagcgcattagagctttacttttttcaaaatagtatactgcgcgctatacaaattattgtattgtattgtaattctatataatagatcccctcaaaaaatatggataactt
gi|8 : atgGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGAAGGTTAACTGTAAATACTATCATGT-ACTAGA-----A---AGTT--CTGACATCTTCTTATGATACACTTAAC---AGTTTATTATTCTGCA---CCTTTTGTTT------TAGATTGTA--T---ATGTA--TTTTATTgctaatgcttgtcaaacacactagagctttactttaagtatattgttctatacaaattaccgtactgtgttgtattgttgtat
gi|9 : gAAGCTGC-AGAATGT--TTAACGTACA-GCAGCA--CGGATGATAACT-CGTACGATAA----AAAGCGAAC--ACAGTTA-TCCAGT-TT-GGAAAAATTTC----CTCTGGCGCACAGTGGAATA-AATGTGTTGATACA---------AAATTCTTTTCTTC--ATA----------TAGAAAGCACTGAATAGCCATTCTCCGCGATACACATTACTGATCTgtcatacttgtcaagcgcattagagctttatttaaagtatattgcgctattcaaattatcttattgta
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATCTCGACAAAGTCCCTTACGATGGAAAAAACAATGCAGTTCCGTTGCAAAGATGCATGTTACATGCATGCTACGTCGCGAATAGAGGCACATCGAGCCGTTTAAAACTGAAAGATGCTTGTAAAATTCTGTGTGAATTCTCTCGTTACATCGGGAGGCTGGACTATAGCGCGTTAACGCTTTTACTGTATGGAATTAACAGAAAGCAGTTCACAAACTCCAAGCGAAATTCAAAACACGGCTG
Unaligned ( gi|12 ): AATTTTATCAATTGATTGATACTGTGTATATCTTTTATTGCCCATGCTTGTCAAGTGCATTAAAAATATACTATAAGTATATTGCGCTAAACAAATGAAAGCATTGTATTATTTGGTA
Unaligned ( gi|14 ): ACTCTTATCTACTTATTATATGTTTTTGTTTTTTAATATTGTATAAGGATATATTTTTTATTGCATGCTTGTCAAGCGATTAGAGTATTGTTTT
Unaligned ( gi|17 ): ACTTATAAATTGTGCATTTTTATATGTTCTCGGATTTACTACATAACTTGAGAATAGGAATTCATGGACATCATAATCAGTC
Unaligned ( gi|19 ): TTATATTGCATATGTCTTTTATTGCCAATGCTTGTCAAGCGCATTAGAACTTTACTTTAGGTTTCA
Alignments
lowQualScore : 111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 22222 1 11 1 11 1 2222 11 1 11 222 11 11 222222222222222222222222222222222222 1 1 222 111 11 11 222 1 222222 4444444444444444444 222222 666666666666666666666666666666666666 1 11 1 1 11 1 1 2222 11 1 1 2 33333333 111111111111111111111111 4444444444 3333 444444 11 3333 5555555 3333 11 11 66666666666666666 11 1 2222 1 1 1 666666666666666666666666666666666666666666 11 333333333 111111 111111
lowQualScore : 1 1 1 1 66666 1 5 88 22 1 5 88 5 1 4444 88 2 5 77 111 1 1 1 88 1 88 444444444444444444444444444444444444 0 0 0 0 888 99 4 3 1 6 111 3 6 1 11 3 11 000 6 6 3 3 0 0 0 444444 1 1 1 7777777777777777777 444444 777777777777777777777777777777777777 0 33 0 0 0 0 33 0 5 0 1 1111 33 0 22 0 0 1 00000000 777777777777777777777777 7 1 6 3333333333 3 3 0 0000 888888 99 7777 4444444 3333 7 88 88 11111111111111111 44 44 0 1111 0 0 0 0 999999999999999999999999999999999999999999 3 3 1 8 0 11 5 222222222 77 5 1 5 5 3 1 3 1 888 1 666666 111111 888
lowQualScore : . . . . ..... . . .. .. . . .. . . .... .. . . .. ... . . . .. . .. .................................... . . . . ... .. . . . . ... . . . .. . .. ... . . . . . . . ...... . . . ................... ...... .................................... . .. . . . . .. . . . . .... .. . .. . . . ........ ........................ . . . .......... . . . .... ...... .. .... ....... .... . .. .. ................. .. .. . .... . . . . .......................................... . . . . . .. . ......... .. . . . . . . . . ... . ...... ...... ...
lowQualScore : 0 0 0 0 00000 0 5 00 00 0 5 00 5 0 0000 55 5 0 55 555 0 0 0 55 0 33 555555555555555555555555555555555555 0 0 8 8 888 22 2 2 0 7 777 5 7 0 00 8 00 444 7 7 2 2 0 2 2 000000 0 0 0 5555555555555555555 000000 555555555555555555555555555555555555 0 88 2 0 2 0 88 2 0 0 0 2222 88 0 88 0 0 2 55555555 000000000000000000000000 3 0 7 8888888888 2 2 2 0000 333333 33 0000 3333333 0000 3 33 33 00000000000000000 33 00 0 2222 0 0 0 2 333333333333333333333333333333333333333333 8 2 0 0 8 00 7 666666666 99 7 0 3 4 6 7 6 4 888 0 444444 000000 000
consensus : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT--TTGACAATAACGCT--TTGTGAA-CT-----ATAC-TACATT-----TGTTAAAAAT-CTT-GGATTTTATT-ATTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC--GT-AGAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTNACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCATTAACAAGCAGCTGNCGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATAC---TTACTGATCTTGTGAACATTTG---NCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TC-A-TGCG-TT-AAAAGTTCCAAAAACC--AGAG--GTA---ACATA-CGGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAA--T--CC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-ACTGGA----TG---AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
Reference ( family-2101 ) : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT--TTGACAATAACGCT--TTGTGAA-CT-----ATAC-TACATT-----TGTTAAAAAT-CTT-GGATTTTATT-ATTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC--GT-AGAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTNACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCATTAACAAGCAGCTGNCGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATAC---TTACTGATCTTGTGAACATTTG---NCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TC-A-TGCG-TT-AAAAGTTCCAAAAACC--AGAG--GTA---ACATA-CGGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAA--T--CC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-ACTGGA----TG---AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
gi|1 : TTGAAATCGGAGTGCCCCAAG-----GTTTGGACC-CCGGG--TGTACTGTGTGTTTTCCTAACCTAT-CGG--AAACATCTCTTAGAAC--CATCGCATGCAATATCACGACA---ATGCAGATGACACTCAAATATGCATCGTGATAGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGAATGCTTTTTTTTTTCCCAAGCAAAGAGCAAAAGATGTTCCAGATTTTGAACTTTCGT--TTGACAGTAACGCT--C-----------------------TT-----TGTTCAAAAT-CTTGGGATTCTATTAATTTTGACAAAACA--TTAAATATGGAAAAACAGTGCA-CCT---CAACCTCAA-ATAT--GTTTTA--TGAACT-GT-AGAAACATCAGCTGCATTCG-ATTTTACATTTCGGAGGATGCCCGCAAA-ACTCTCATCAACT----CGCTTG
gi|1 : TAAGCTGA-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGAAGA----AAAGCGAAC--ATA-TTACCCCAGT-TTAGAAAGAT--------CACTGGCTCCCGGTAAAATA-A------------A---------A--TTTTTGTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCTATACC--TTACTGATCTTATGAATATTT----TTTCTCCTA-CTCGTTTGC-TCCGTTTGAAAGA-TTTACTGCG-TTTAAAAGTTCCAAAAACC--AGAACTGTA---ACATA-CAGAA---GTGGCCA-TTTCGA-TTTTGCTGCCTT----C-TCTATCTGGAACTC-TTTA-CCCGTGAAACTGAGAAG--T--CC--TCAT------CCTTTGTT--------------GAGGTATACAAG----TCTTTTT-AAACAAT--CATTTGACTATTAACTGTAAATATTGTCATAG-ACTTGA----TG---ATTT--TTGACATTTT-TAAGGAAACACCTAACTCTACTTTATTAATCCGCA---TTTTTTGTTT------TATATTGTA--T---ATACA--TTTTATTctggaaactatatgctttatggcatctgttaagctgaagaaagttcaaacacagcagcacgggtgataactcgtacgaagaaaagcgaacatattaccccagtttagaaagatcactggctcccggtaaaataaaatttttgtcttcgtatatacaaagcagtgaataatcaagctccgctataccttactgatcttatgaatattttttctcctactcgtttgctccgtttgaaagatttactgcgtttaaaagttccaaaaaccagaactgtaacatacagaagtggccatttcgattttgctgccttctctatctggaactctttacccgtgaaactgagaagtcctcatcctttgttgaggtatacaagtctttttaaacaatcatttgactattaactgtaaatattgtcatagacttgatgatttttgacatttttaaggaaacacctaactctactttattaatccgcattttttgttttatattgtatatacattttatt
gi|10 : ttgaaatcggagtgccccaaggtttggaccccgggtgtactgtgtgttttcctaacctatcggaaacatctcttagaaccatcgcatgcaatatcacgacaatgcagatgacactcaaatatgcatcgtgatagagcccactgatgacttaggaaatgtttcaggcgtcctttcttagtaactgtctcacgggcatcagatcatgaatgtgtactaatcttctaaagttaaaccaagatacaacagaatgaatgcttttttttttcccaagcaaagagcaaaagatgttccagattttgaactttcgtttgacagtaacgctctttgttcaaaatcttgggattctattaattttgacaaaacattaaatatggaaaaacagtgcacctcaacctcaaatatgttttatgaactgtagaaacatcagctgcattcgattttacatttcggaggatgcccgcaaaactctcatcaactcgcttgctggaaactatatgctttatggcatctgtTGGGTGCTTTTTCCT--CCCAAGCAGAAAGTGAATGATGTTCCAGATTTTGAACCTAAGTATTTGACAATAACGCTATTTGTGAA-TTTATGAATG--TACATT-----TGTTAAAAAT-CTT-GAATTTTATT---TTTGACAAAACT--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-G
gi|11 : --TTGTGAAACT-----ATACCTACATTAATTTTGTTAAAAAT-CTT-GGATTGCATT----TTGACAAAACC--TT-----T----AAACAGTGCA-CCT---CAACCATAATACAT--GTTTTA--TGAAC--AT-TGAAACATCAGCCGCATTCA-ATa
gi|13 : ccagtctttcaagcttcCAGAAAGTAAGTGATGTTCCAGATTTTGAACTAGCGT--TTGGCAATAAC--------------------ATAC-----TT-----TGTTAAAAACATTT-GGATTTTA-----TTTGACAAAACT--TTAAATATAGA
gi|15 : TTTTATTAATCTGTA---TTTTTTGTTT------TATATTATA--T---ATATA--TTTTATT
gi|16 : CAAAACC--TTGAATATGGAGAAACAGTGCA-CCT---CAACCATGA-GAAC--ATT-----TGAA----T-AGAAACATCAGCCGCATTCA-ATTTTAgcccatgcttgtcaaatgcattagagctttaagtatgttgcgct
gi|18 : gtgT-AGAAACATCATCTGCATTCG-ATCTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAAGT-----ACCTGTGACCT
gi|2 : tTTAGAATAGGTGTGCCACCAGCCTGTGCTTGGAACACCAAAACTATATTGTATGTTCTCAAAGCCGATTCGGTGAAAC-TGTC----GACTTCATGACACG-AACATCA--ACATATATGCAGATGACACGCAAATCTACATTGTGGTCGAACC
gi|2 : cTC-ATTTTGACAGAACCCTTTGCAT-TGGAAAAACA-TGCAATCG---CAATAACAA-GGTC--GTGCTACTTGAACATGT-CGGAA-ATTGGGCGTATCCGCAGTGTAC-CTTCAG-GTTTGCATGTAAGTACGCTCGTCAACTTATACTCTTGTTACATCTCGACT---------GGACCACAGCAACCGTCTTGATTTATGGCCATTAACAAGCAGCTGACGGA--------------TAAGCTGCAAGAGAGTAACAAA-ACACAGGCAGCGTCCGACT--TTATTACGTGCGAAAACGTGAAATCGGACCTATA-TAACACCGGTACT-TAATGATGCACCTAACACTGGCTTCatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgcttcattttgacagaaccctttgcattggaaaaacatgcaatcgcaataacaaggtcgtgctacttgaacatgtcggaaattgggcgtatccgcagtgtaccttcaggtttgcatgtaagtacgctcgtcaacttatactcttgttacatctcgactggaccacagcaaccgtcttgatttatggccattaacaagcagctgacggataagctgcaagagagtaacaaaacacaggcagcgtccgactttattacgtgcgaaaacgtgaaatcggacctatataacaccggtacttaatgatgcacctaacactggcttc
gi|20 : cttagaataggtgtgccaccagcctgtgcttggaacaccaaaactatattgtatgttctcaaagccgattcggtgaaactgtcgacttcatgacacgaacatcaacatatatgcagatgacacgcaaatctacattgtggtcgaaccatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgctTTAACTGTAAATACTATCATGT-ACTGCA----T----AGTT--TTGATATCTT-TAAGGAAACGCTTAATTCTA
gi|21 : TTTTATTAATCTGCATTTTTTTTTGCTT------TATATTGTA--CAGAATATA---TTTATTa
gi|22 : TCGA-TTTGGCTCCCCC----CCTCTCTCTGGAACTC-TTTA-ACCGTGAAAGTGAgcccatgcttg
gi|3 : AAAAACAGTGTA-CTTGAACAACC-TAA-GAACATGTTTTA--TGAAC--ATTAGAAACATGAGCCGCATTCA-ATCCTACATTTCGGAGGATATCTGCAAA-ACCCTCATCAATT----CGCTTGTCACTTTTCTACTAGACTACCTGAA-------AACTAGA---CTTTATGA---------------TGTCAGTAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-AATCC-ACAGCA--CGGGT-ATAACT-CGTACGATGT----AAAGCGAAC--ACA-TTACCCCAGT-TTTGAAGGATTCTC----CAGTGGTTCCCGGTAGAATATA------------AGTCCAGTACAAAATCTTATCTTCGTATACAAAGCAGTATACAAAGCAGTGAACAATCAAGCTCCTCGATA--------TGATCTTGTGAACATTTA---A-TCTCCA-GCTCGTTC-CCTCCGTTCGAAAGAATC-AGTGCGATT-AAAAGTTCCAAAA-CC--AGCG--GTA-----------------GTTGTC-GTTTCGA-CTTTGCAGCCTC----C-ACTCTCTGGAGCAC-TTTA-CCCGTCAAATGAAGAAATGT--CCATTCATTATATACCTT--TC---------AAAAG--GATTTAAAAACTTATCTTTTT-AAAC-AG--CATTTGATTGTTAACTG-AAATATTATCATGC-ACTGGA----AG----GTT--TTGACATCTT-TAACGATGCAC-TA----TATTTTATTAATCTGCA---T
gi|4 : ttatatattaatA----------TACAA--CAG--AATAATCAAGCTCCGCAATAC---TTACTGATCTTGTGAACATTTGTTACCTCTCCAAACTCGTT--------TTCCAAAG-----A-TGCA----------TCCAAAAACCAGAGAG--GTAGCTACATACCGGAAACCGCAGCCAGTTTCGACTTTTGCTGCCTTCCTGC-TCCCTCTGGAACTCATTTACCCCGTGAAACTGAGAAA--TGGCC---CAT------CATTTGTTGGCGTTTTAAAAAGGAG-TTTAAAAATTTTCCTTTTTAAAACAAGCACATTTGACCGTTAACTGT---TATTA--AAGTGACTGGA----TG---ATATGGTGGACATTTT-TAAAAG-------AACCC----TTAT-----TGCA---TATTT--TTT------TATATTGTGACT---ATATG--CTTTATT
gi|5 : aaCTGTAAATACTATCATGT-ACCGGAGTACTGGAAAGTT--GTAACATCTT-TTATGATACACTTAACTCTATTTTATTAATCTGCA---TGTTTTGTTT------TATATTGTA--T---ATATGTCTTTTATT
gi|7 : aattGATTTAAAAACTTATTTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTCTCATGT-ACTGGA-----A---AGTT--TTCACATCTT-TTACGATATACTTATCTCTATTTTATTAATCTGCA---TGTTTTGTTTTACATGTATATTGTA--T---ATGTC--TTTTATTgccaatgcttgtcaagcgcattagagctttacttttttcaaaatagtatactgcgcgctatacaaattattgtattgtattgtaattctatataatagatcccctcaaaaaatatggataactt
gi|8 : atgGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGAAGGTTAACTGTAAATACTATCATGT-ACTAGA-----A---AGTT--CTGACATCTTCTTATGATACACTTAAC---AGTTTATTATTCTGCA---CCTTTTGTTT------TAGATTGTA--T---ATGTA--TTTTATTgctaatgcttgtcaaacacactagagctttactttaagtatattgttctatacaaattaccgtactgtgttgtattgttgtat
gi|9 : gAAGCTGC-AGAATGT--TTAACGTACA-GCAGCA--CGGATGATAACT-CGTACGATAA----AAAGCGAAC--ACAGTTA-TCCAGT-TT-GGAAAAATTTC----CTCTGGCGCACAGTGGAATA-AATGTGTTGATACA---------AAATTCTTTTCTTC--ATA----------TAGAAAGCACTGAATAGCCATTCTCCGCGATACACATTACTGATCTgtcatacttgtcaagcgcattagagctttatttaaagtatattgcgctattcaaattatcttattgta
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATCTCGACAAAGTCCCTTACGATGGAAAAAACAATGCAGTTCCGTTGCAAAGATGCATGTTACATGCATGCTACGTCGCGAATAGAGGCACATCGAGCCGTTTAAAACTGAAAGATGCTTGTAAAATTCTGTGTGAATTCTCTCGTTACATCGGGAGGCTGGACTATAGCGCGTTAACGCTTTTACTGTATGGAATTAACAGAAAGCAGTTCACAAACTCCAAGCGAAATTCAAAACACGGCTG
Unaligned ( gi|12 ): AATTTTATCAATTGATTGATACTGTGTATATCTTTTATTGCCCATGCTTGTCAAGTGCATTAAAAATATACTATAAGTATATTGCGCTAAACAAATGAAAGCATTGTATTATTTGGTA
Unaligned ( gi|14 ): ACTCTTATCTACTTATTATATGTTTTTGTTTTTTAATATTGTATAAGGATATATTTTTTATTGCATGCTTGTCAAGCGATTAGAGTATTGTTTT
Unaligned ( gi|17 ): ACTTATAAATTGTGCATTTTTATATGTTCTCGGATTTACTACATAACTTGAGAATAGGAATTCATGGACATCATAATCAGTC
Unaligned ( gi|19 ): TTATATTGCATATGTCTTTTATTGCCAATGCTTGTCAAGCGCATTAGAACTTTACTTTAGGTTTCA
Alignments
lowQualScore : 111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 22222 1 11 1 11 1 2222 11 1 11 222 11 11 222222222222222222222222222222222222 1 1 222 111 11 11 222 1 222222 4444444444444444444 222222 666666666666666666666666666666666666 1 11 1 1 11 1 1 2222 11 1 1 2 33333333 111111111111111111111111 4444444444 3333 444444 11 3333 5555555 3333 11 11 66666666666666666 11 1 2222 1 1 1 666666666666666666666666666666666666666666 11 333333333 111111 111111
lowQualScore : 1 1 1 1 66666 1 5 88 22 1 5 88 5 1 4444 88 2 5 77 111 1 1 1 88 1 88 444444444444444444444444444444444444 0 0 0 0 888 99 4 3 1 6 111 3 6 1 11 3 11 000 6 6 3 3 0 0 0 444444 1 1 1 7777777777777777777 444444 777777777777777777777777777777777777 0 33 0 0 0 0 33 0 5 0 1 1111 33 0 22 0 0 1 00000000 777777777777777777777777 7 1 6 3333333333 3 3 0 0000 888888 99 7777 4444444 3333 7 88 88 11111111111111111 44 44 0 1111 0 0 0 0 999999999999999999999999999999999999999999 3 3 1 8 0 11 5 222222222 77 5 1 5 5 3 1 3 1 888 1 666666 111111 888
lowQualScore : . . . . ..... . . .. .. . . .. . . .... .. . . .. ... . . . .. . .. .................................... . . . . ... .. . . . . ... . . . .. . .. ... . . . . . . . ...... . . . ................... ...... .................................... . .. . . . . .. . . . . .... .. . .. . . . ........ ........................ . . . .......... . . . .... ...... .. .... ....... .... . .. .. ................. .. .. . .... . . . . .......................................... . . . . . .. . ......... .. . . . . . . . . ... . ...... ...... ...
lowQualScore : 0 0 0 0 00000 0 5 00 00 0 5 00 5 0 0000 55 5 0 55 555 0 0 0 55 0 33 555555555555555555555555555555555555 0 0 8 8 888 22 2 2 0 7 777 5 7 0 00 8 00 444 7 7 2 2 0 2 2 000000 0 0 0 5555555555555555555 000000 555555555555555555555555555555555555 0 88 2 0 2 0 88 2 0 0 0 2222 88 0 88 0 0 2 55555555 000000000000000000000000 3 0 7 8888888888 2 2 2 0000 333333 33 0000 3333333 0000 3 33 33 00000000000000000 33 00 0 2222 0 0 0 2 333333333333333333333333333333333333333333 8 2 0 0 8 00 7 666666666 99 7 0 3 4 6 7 6 4 888 0 444444 000000 000
consensus : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT--TTGACAATAACGCT--TTGTGAA-CT-----ATAC-TACATT-----TGTTAAAAAT-CTT-GGATTTTATT-ATTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC--GT-AGAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTNACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCATTAACAAGCAGCTGNCGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATAC---TTACTGATCTTGTGAACATTTG---NCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TC-A-TGCG-TT-AAAAGTTCCAAAAACC--AGAG--GTA---ACATA-CGGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAA--T--CC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-ACTGGA----TG---AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
Reference ( family-2101 ) : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT--TTGACAATAACGCT--TTGTGAA-CT-----ATAC-TACATT-----TGTTAAAAAT-CTT-GGATTTTATT-ATTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC--GT-AGAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTNACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCATTAACAAGCAGCTGNCGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATAC---TTACTGATCTTGTGAACATTTG---NCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TC-A-TGCG-TT-AAAAGTTCCAAAAACC--AGAG--GTA---ACATA-CGGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAA--T--CC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-ACTGGA----TG---AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
gi|1 : TTGAAATCGGAGTGCCCCAAG-----GTTTGGACC-CCGGG--TGTACTGTGTGTTTTCCTAACCTAT-CGG--AAACATCTCTTAGAAC--CATCGCATGCAATATCACGACA---ATGCAGATGACACTCAAATATGCATCGTGATAGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGAATGCTTTTTTTTTTCCCAAGCAAAGAGCAAAAGATGTTCCAGATTTTGAACTTTCGT--TTGACAGTAACGCT--C-----------------------TT-----TGTTCAAAAT-CTTGGGATTCTATTAATTTTGACAAAACA--TTAAATATGGAAAAACAGTGCA-CCT---CAACCTCAA-ATAT--GTTTTA--TGAACT-GT-AGAAACATCAGCTGCATTCG-ATTTTACATTTCGGAGGATGCCCGCAAA-ACTCTCATCAACT----CGCTTG
gi|1 : TAAGCTGA-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGAAGA----AAAGCGAAC--ATA-TTACCCCAGT-TTAGAAAGAT--------CACTGGCTCCCGGTAAAATA-A------------A---------A--TTTTTGTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCTATACC--TTACTGATCTTATGAATATTT----TTTCTCCTA-CTCGTTTGC-TCCGTTTGAAAGA-TTTACTGCG-TTTAAAAGTTCCAAAAACC--AGAACTGTA---ACATA-CAGAA---GTGGCCA-TTTCGA-TTTTGCTGCCTT----C-TCTATCTGGAACTC-TTTA-CCCGTGAAACTGAGAAG--T--CC--TCAT------CCTTTGTT--------------GAGGTATACAAG----TCTTTTT-AAACAAT--CATTTGACTATTAACTGTAAATATTGTCATAG-ACTTGA----TG---ATTT--TTGACATTTT-TAAGGAAACACCTAACTCTACTTTATTAATCCGCA---TTTTTTGTTT------TATATTGTA--T---ATACA--TTTTATTctggaaactatatgctttatggcatctgttaagctgaagaaagttcaaacacagcagcacgggtgataactcgtacgaagaaaagcgaacatattaccccagtttagaaagatcactggctcccggtaaaataaaatttttgtcttcgtatatacaaagcagtgaataatcaagctccgctataccttactgatcttatgaatattttttctcctactcgtttgctccgtttgaaagatttactgcgtttaaaagttccaaaaaccagaactgtaacatacagaagtggccatttcgattttgctgccttctctatctggaactctttacccgtgaaactgagaagtcctcatcctttgttgaggtatacaagtctttttaaacaatcatttgactattaactgtaaatattgtcatagacttgatgatttttgacatttttaaggaaacacctaactctactttattaatccgcattttttgttttatattgtatatacattttatt
gi|10 : ttgaaatcggagtgccccaaggtttggaccccgggtgtactgtgtgttttcctaacctatcggaaacatctcttagaaccatcgcatgcaatatcacgacaatgcagatgacactcaaatatgcatcgtgatagagcccactgatgacttaggaaatgtttcaggcgtcctttcttagtaactgtctcacgggcatcagatcatgaatgtgtactaatcttctaaagttaaaccaagatacaacagaatgaatgcttttttttttcccaagcaaagagcaaaagatgttccagattttgaactttcgtttgacagtaacgctctttgttcaaaatcttgggattctattaattttgacaaaacattaaatatggaaaaacagtgcacctcaacctcaaatatgttttatgaactgtagaaacatcagctgcattcgattttacatttcggaggatgcccgcaaaactctcatcaactcgcttgctggaaactatatgctttatggcatctgtTGGGTGCTTTTTCCT--CCCAAGCAGAAAGTGAATGATGTTCCAGATTTTGAACCTAAGTATTTGACAATAACGCTATTTGTGAA-TTTATGAATG--TACATT-----TGTTAAAAAT-CTT-GAATTTTATT---TTTGACAAAACT--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-G
gi|11 : --TTGTGAAACT-----ATACCTACATTAATTTTGTTAAAAAT-CTT-GGATTGCATT----TTGACAAAACC--TT-----T----AAACAGTGCA-CCT---CAACCATAATACAT--GTTTTA--TGAAC--AT-TGAAACATCAGCCGCATTCA-ATa
gi|13 : ccagtctttcaagcttcCAGAAAGTAAGTGATGTTCCAGATTTTGAACTAGCGT--TTGGCAATAAC--------------------ATAC-----TT-----TGTTAAAAACATTT-GGATTTTA-----TTTGACAAAACT--TTAAATATAGA
gi|15 : TTTTATTAATCTGTA---TTTTTTGTTT------TATATTATA--T---ATATA--TTTTATT
gi|16 : CAAAACC--TTGAATATGGAGAAACAGTGCA-CCT---CAACCATGA-GAAC--ATT-----TGAA----T-AGAAACATCAGCCGCATTCA-ATTTTAgcccatgcttgtcaaatgcattagagctttaagtatgttgcgct
gi|18 : gtgT-AGAAACATCATCTGCATTCG-ATCTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAAGT-----ACCTGTGACCT
gi|2 : tTTAGAATAGGTGTGCCACCAGCCTGTGCTTGGAACACCAAAACTATATTGTATGTTCTCAAAGCCGATTCGGTGAAAC-TGTC----GACTTCATGACACG-AACATCA--ACATATATGCAGATGACACGCAAATCTACATTGTGGTCGAACC
gi|2 : cTC-ATTTTGACAGAACCCTTTGCAT-TGGAAAAACA-TGCAATCG---CAATAACAA-GGTC--GTGCTACTTGAACATGT-CGGAA-ATTGGGCGTATCCGCAGTGTAC-CTTCAG-GTTTGCATGTAAGTACGCTCGTCAACTTATACTCTTGTTACATCTCGACT---------GGACCACAGCAACCGTCTTGATTTATGGCCATTAACAAGCAGCTGACGGA--------------TAAGCTGCAAGAGAGTAACAAA-ACACAGGCAGCGTCCGACT--TTATTACGTGCGAAAACGTGAAATCGGACCTATA-TAACACCGGTACT-TAATGATGCACCTAACACTGGCTTCatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgcttcattttgacagaaccctttgcattggaaaaacatgcaatcgcaataacaaggtcgtgctacttgaacatgtcggaaattgggcgtatccgcagtgtaccttcaggtttgcatgtaagtacgctcgtcaacttatactcttgttacatctcgactggaccacagcaaccgtcttgatttatggccattaacaagcagctgacggataagctgcaagagagtaacaaaacacaggcagcgtccgactttattacgtgcgaaaacgtgaaatcggacctatataacaccggtacttaatgatgcacctaacactggcttc
gi|20 : cttagaataggtgtgccaccagcctgtgcttggaacaccaaaactatattgtatgttctcaaagccgattcggtgaaactgtcgacttcatgacacgaacatcaacatatatgcagatgacacgcaaatctacattgtggtcgaaccatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgctTTAACTGTAAATACTATCATGT-ACTGCA----T----AGTT--TTGATATCTT-TAAGGAAACGCTTAATTCTA
gi|21 : TTTTATTAATCTGCATTTTTTTTTGCTT------TATATTGTA--CAGAATATA---TTTATTa
gi|22 : TCGA-TTTGGCTCCCCC----CCTCTCTCTGGAACTC-TTTA-ACCGTGAAAGTGAgcccatgcttg
gi|3 : AAAAACAGTGTA-CTTGAACAACC-TAA-GAACATGTTTTA--TGAAC--ATTAGAAACATGAGCCGCATTCA-ATCCTACATTTCGGAGGATATCTGCAAA-ACCCTCATCAATT----CGCTTGTCACTTTTCTACTAGACTACCTGAA-------AACTAGA---CTTTATGA---------------TGTCAGTAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-AATCC-ACAGCA--CGGGT-ATAACT-CGTACGATGT----AAAGCGAAC--ACA-TTACCCCAGT-TTTGAAGGATTCTC----CAGTGGTTCCCGGTAGAATATA------------AGTCCAGTACAAAATCTTATCTTCGTATACAAAGCAGTATACAAAGCAGTGAACAATCAAGCTCCTCGATA--------TGATCTTGTGAACATTTA---A-TCTCCA-GCTCGTTC-CCTCCGTTCGAAAGAATC-AGTGCGATT-AAAAGTTCCAAAA-CC--AGCG--GTA-----------------GTTGTC-GTTTCGA-CTTTGCAGCCTC----C-ACTCTCTGGAGCAC-TTTA-CCCGTCAAATGAAGAAATGT--CCATTCATTATATACCTT--TC---------AAAAG--GATTTAAAAACTTATCTTTTT-AAAC-AG--CATTTGATTGTTAACTG-AAATATTATCATGC-ACTGGA----AG----GTT--TTGACATCTT-TAACGATGCAC-TA----TATTTTATTAATCTGCA---T
gi|4 : ttatatattaatA----------TACAA--CAG--AATAATCAAGCTCCGCAATAC---TTACTGATCTTGTGAACATTTGTTACCTCTCCAAACTCGTT--------TTCCAAAG-----A-TGCA----------TCCAAAAACCAGAGAG--GTAGCTACATACCGGAAACCGCAGCCAGTTTCGACTTTTGCTGCCTTCCTGC-TCCCTCTGGAACTCATTTACCCCGTGAAACTGAGAAA--TGGCC---CAT------CATTTGTTGGCGTTTTAAAAAGGAG-TTTAAAAATTTTCCTTTTTAAAACAAGCACATTTGACCGTTAACTGT---TATTA--AAGTGACTGGA----TG---ATATGGTGGACATTTT-TAAAAG-------AACCC----TTAT-----TGCA---TATTT--TTT------TATATTGTGACT---ATATG--CTTTATT
gi|5 : aaCTGTAAATACTATCATGT-ACCGGAGTACTGGAAAGTT--GTAACATCTT-TTATGATACACTTAACTCTATTTTATTAATCTGCA---TGTTTTGTTT------TATATTGTA--T---ATATGTCTTTTATT
gi|7 : aattGATTTAAAAACTTATTTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTCTCATGT-ACTGGA-----A---AGTT--TTCACATCTT-TTACGATATACTTATCTCTATTTTATTAATCTGCA---TGTTTTGTTTTACATGTATATTGTA--T---ATGTC--TTTTATTgccaatgcttgtcaagcgcattagagctttacttttttcaaaatagtatactgcgcgctatacaaattattgtattgtattgtaattctatataatagatcccctcaaaaaatatggataactt
gi|8 : atgGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGAAGGTTAACTGTAAATACTATCATGT-ACTAGA-----A---AGTT--CTGACATCTTCTTATGATACACTTAAC---AGTTTATTATTCTGCA---CCTTTTGTTT------TAGATTGTA--T---ATGTA--TTTTATTgctaatgcttgtcaaacacactagagctttactttaagtatattgttctatacaaattaccgtactgtgttgtattgttgtat
gi|9 : gAAGCTGC-AGAATGT--TTAACGTACA-GCAGCA--CGGATGATAACT-CGTACGATAA----AAAGCGAAC--ACAGTTA-TCCAGT-TT-GGAAAAATTTC----CTCTGGCGCACAGTGGAATA-AATGTGTTGATACA---------AAATTCTTTTCTTC--ATA----------TAGAAAGCACTGAATAGCCATTCTCCGCGATACACATTACTGATCTgtcatacttgtcaagcgcattagagctttatttaaagtatattgcgctattcaaattatcttattgta
blockSeqs : A T A C CCTGT A A AC AA G T TG . G . TT G . . TAT G C C . A AT GCTATTTGTGAATTTATGAATGTACATT A . AT CT A A G A GAA A T C AT T CT ATG T C A A T TATACT T A T AGACTACCTGAA GAC TGTCAGTAAACACTTTACTTG A AA C G TC G A A CGTG CT G CA A T T GCACCTAA AATGTGTTGATACA A A G CAAAGCAGTA A T CACA GTTACC AA CCC AATCAG ATT A AG . GCTACATACCGGAAACC TT AG C CCTG C A C TGGCCCATCATTTGTTGGCGTTTTAAAAAGG A C A A CA G GTACTGGAA GG C A G A T A T T TTT T TACATG CAGA TCT
blockSeqs : G . ATACTT . . . . A A A . . A . A . C . A . . A A . CG C T . . . . . . . T . . . CC . . G TCTC TAAGTCCAGTAC A T . . A T C AA G . A . . . . . CA G . . . . . TGTCCATTCATTATATACCTTTCAAAAG A T T . . . AG . . A C T T A C T . T . ACT T
blockSeqs : . . . . G A G . . A . G . T . A . . . . . A . . . . . . . T . . . T . . A TTTC . . . . . . . . . A C A . . . TG . . A A T T A T T . A . T C
blockSeqs : . . G . G . . A . A . . . . . . . C A . . . T . . T T T T T T T . G . T T
blockSeqs : . . . . . . . . . . . A . . T C T . A . . . G . T T
blockSeqs : . A . . T T . . . . . . C . T .
blockSeqs : .
blockSeqCons : *** A** A********
originalCons : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT--TTGACAATAACGCT--TTGTGAA-CT-----ATAC-TACATT-----TGTTAAAAAT-CTT-GGATTTTATT-ATTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC--GT-AGAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTNACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCATTAACAAGCAGCTGNCGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATAC---TTACTGATCTTGTGAACATTTG---NCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TC-A-TGCG-TT-AAAAGTTCCAAAAACC--AGAG--GTA---ACATA-CGGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAA--T--CC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-ACTGGA----TG---AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
finalCons : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT--TTGACAATAACGCT--TTGTGAA-CT-----ATAC-TACATT-----TGTTAAAAAT-CTT-GGATTTTATT---TTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAACA--T-AGAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTNACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCATTAACAAGCAGCTGNCGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATAC---TTACTGATCTTGTGAACATTTG---NCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TC-A-TGCG-TT-AAAAGTTCCAAAAACC--AGAG--GTA---ACATA-CGGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAA--T--CC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-ACTGGAA--------AGTT--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATCTCGACAAAGTCCCTTACGATGGAAAAAACAATGCAGTTCCGTTGCAAAGATGCATGTTACATGCATGCTACGTCGCGAATAGAGGCACATCGAGCCGTTTAAAACTGAAAGATGCTTGTAAAATTCTGTGTGAATTCTCTCGTTACATCGGGAGGCTGGACTATAGCGCGTTAACGCTTTTACTGTATGGAATTAACAGAAAGCAGTTCACAAACTCCAAGCGAAATTCAAAACACGGCTG
Unaligned ( gi|12 ): AATTTTATCAATTGATTGATACTGTGTATATCTTTTATTGCCCATGCTTGTCAAGTGCATTAAAAATATACTATAAGTATATTGCGCTAAACAAATGAAAGCATTGTATTATTTGGTA
Unaligned ( gi|14 ): ACTCTTATCTACTTATTATATGTTTTTGTTTTTTAATATTGTATAAGGATATATTTTTTATTGCATGCTTGTCAAGCGATTAGAGTATTGTTTT
Unaligned ( gi|17 ): ACTTATAAATTGTGCATTTTTATATGTTCTCGGATTTACTACATAACTTGAGAATAGGAATTCATGGACATCATAATCAGTC
Unaligned ( gi|19 ): TTATATTGCATATGTCTTTTATTGCCAATGCTTGTCAAGCGCATTAGAACTTTACTTTAGGTTTCA
Alignments
lowQualScore : 111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 22222 1 11 1 11 1 2222 11 1 11 222 11 11 222222222222222222222222222222222222 1 1 1111 111 11 11 1111 1 222222 4444444444444444444 222222 666666666666666666666666666666666666 1 11 1 1 11 1 1 2222 11 1 1 2 33333333 3333333333333333333333333 4444444444 33333 444444 11 3333 555555555555 11 11 66666666666666666 11 1 2222 1 1 1 7777777777777777777777777777777777 11 22222222 111111 111111
lowQualScore : 1 1 1 1 66666 1 5 88 22 1 5 88 5 1 4444 88 2 5 77 111 1 1 1 88 1 88 444444444444444444444444444444444444 0 0 0 7777 0 99 4 3 1 6 111 3 6 1 11 3 11 0 8 3333 6 3 3 0 0 0 444444 1 1 1 7777777777777777777 444444 777777777777777777777777777777777777 0 33 0 0 0 0 33 0 5 0 1 1111 33 0 22 0 0 1 00000000 2222222222222222222222222 1 6 3333333333 3 3 0 00000 888888 99 7777 444444444444 7 88 88 11111111111111111 44 44 0 1111 0 0 0 0 6666666666666666666666666666666666 8 0 8 0 11 5 00000000 66 5 77 5 1 5 5 3 1 3 1 888 1 666666 111111 888
lowQualScore : . . . . ..... . . .. .. . . .. . . .... .. . . .. ... . . . .. . .. .................................... . . . .... . .. . . . . ... . . . .. . .. . . .... . . . . . . ...... . . . ................... ...... .................................... . .. . . . . .. . . . . .... .. . .. . . . ........ ......................... . . .......... . . . ..... ...... .. .... ............ . .. .. ................. .. .. . .... . . . . .................................. . . . . .. . ........ .. . .. . . . . . . . . ... . ...... ...... ...
lowQualScore : 0 0 0 0 00000 0 5 00 00 0 5 00 5 0 0000 55 5 0 55 555 0 0 0 55 0 33 555555555555555555555555555555555555 0 0 8 2222 8 22 2 2 0 7 777 5 7 0 00 8 00 8 0 7777 7 2 2 0 2 2 000000 0 0 0 5555555555555555555 000000 555555555555555555555555555555555555 0 88 2 0 2 0 88 2 0 0 0 2222 88 0 88 0 0 2 55555555 3333333333333333333333333 0 7 8888888888 2 2 2 00000 333333 33 0000 777777777777 3 33 33 00000000000000000 33 00 0 2222 0 0 0 2 3333333333333333333333333333333333 6 8 0 8 00 7 77777777 33 7 99 7 0 3 4 6 7 6 4 888 0 444444 000000 000
consensus : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT--TTGACAATAACGCT--TTGTGAA-CT-----ATAC-TACATT-----TGTTAAAAAT-CTT-GGATTTTAT---TTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC-AT-A--GAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTNACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCATTAACAAGCAGCTGNCGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATA-C---TTACTGATCTTGTGAACATTTG---NCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TCA-TGCG-TTAAAAGTTCCAAAAACC--AGAG--GTA---ACATA-CGGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAATG-CC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-AC--------TGGA-AAGT-T--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
Reference ( family-2101 ) : TTGGAATNGGNGTGCCNCNAGCCTGTGCTTGGANCACCGGGACTGTACTGTGTGTTCTCNNAGCCNATTCGGTGAAACATNTCTTAGGACTTCATCGCACGCAACATCACGACATATATGCAGATGACACNCAAATNTGCATCGTGGTNGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGGGTGCTTTTTCCTTTCCCAAGCAGAAAGTAAATGATGTTCCAGATTTTGAACTTNCGT--TTGACAATAACGCT--TTGTGAA-CT-----ATAC-TACATT-----TGTTAAAAAT-CTT-GGATTTTAT---TTTTGACAAAACC--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-GNAC--GTTTTA--TGAAC-AT-A--GAAACATCAGCCGCATTCG-ATTTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAACT----CGCTTGTNACNTCTCNACTAGACTACCTGGACCACAGCAACCGNNTTGNTTTATGGCCATTAACAAGCAGCTGNCGGNAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGANGA----AAAGCGAAC--ACA-TTACCCCAGT-TT-GAAAGATTCTC----CACTGGCTCCCGGTAGAATA-A------------A---------AAATTCTTNTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCGATA-C---TTACTGATCTTGTGAACATTTG---NCTCTCCAAGCTCGTTC-C-TCCGTTCGAAAGA-TCA-TGCG-TTAAAAGTTCCAAAAACC--AGAG--GTA---ACATA-CGGAA---GCGGCCAGTTTCGA-TTTTGCTGCCTC----C-TCTCTCTGGAACTC-TTTA-CCCGTGAAACTGAGAAAT--CC--TCAT------CCTTTGTT---------AAAAGGAGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTATCATGT-AC--------TGGA-AAGT-T--TTGACATCTT-TNACGATACACTTAACTCTATTTTATTAATCTGCA---TNTTTTGTTT------TATATTGTA--T---ATATA--TTTTATT
gi|1 : TTGAAATCGGAGTGCCCCAAG-----GTTTGGACC-CCGGG--TGTACTGTGTGTTTTCCTAACCTAT-CGG--AAACATCTCTTAGAAC--CATCGCATGCAATATCACGACA---ATGCAGATGACACTCAAATATGCATCGTGATAGAGCCCACTGATGACTTAGGAAATGTTTCAGGCGTCCTTTCTTAGTAACTGTCTCACGGGCATCAGATCATGAATGTGTACTAATCTTCTAAAGTTAAACCAAGATACAACAGAATGAATGCTTTTTTTTTTCCCAAGCAAAGAGCAAAAGATGTTCCAGATTTTGAACTTTCGT--TTGACAGTAACGCT--C-----------------------TT-----TGTTCAAAAT-CTTGGGATTCTATTAATTTTGACAAAACA--TTAAATATGGAAAAACAGTGCA-CCT---CAACCTCAA-ATAT--GTTTTA--TGAACTGT-A--GAAACATCAGCTGCATTCG-ATTTTACATTTCGGAGGATGCCCGCAAA-ACTCTCATCAACT----CGCTTG
gi|1 : TAAGCTGA-AGAAAGT--TCAA-ACACA-GCAGCA--CGGGTGATAACT-CGTACGAAGA----AAAGCGAAC--ATA-TTACCCCAGT-TTAGAAAGAT--------CACTGGCTCCCGGTAAAAT---------------A---------AAATTTTTGTCTTCGTATA----------TACAAAGCAGTGAATAATCAAGCTCCGCTATACC---TTACTGATCTTATGAATATTT----TTTCTCCTA-CTCGTTTGC-TCCGTTTGAAAGATTTACTGCGTTTAAAAGTTCCAAAAACC--AGAACTGTA---ACATA-CAGAA---GTGGCCA-TTTCGA-TTTTGCTGCCTT----C-TCTATCTGGAACTC-TTTA-CCCGTGAAACTGAGAAGT--CC--TCAT------CCTTTGTT--------------GAGGTATACAA----GTCTTTTT-AAACAAT--CATTTGACTATTAACTGTAAATATTGTCATAG-AC--------TTGATGATT-T--TTGACATTTT-TAAGGAAACACCTAACTCTACTTTATTAATCCGCA---TTTTTTGTTT------TATATTGTA--T---ATACA--TTTTATTctggaaactatatgctttatggcatctgttaagctgaagaaagttcaaacacagcagcacgggtgataactcgtacgaagaaaagcgaacatattaccccagtttagaaagatcactggctcccggtaaaataaaatttttgtcttcgtatatacaaagcagtgaataatcaagctccgctataccttactgatcttatgaatattttttctcctactcgtttgctccgtttgaaagatttactgcgtttaaaagttccaaaaaccagaactgtaacatacagaagtggccatttcgattttgctgccttctctatctggaactctttacccgtgaaactgagaagtcctcatcctttgttgaggtatacaagtctttttaaacaatcatttgactattaactgtaaatattgtcatagacttgatgatttttgacatttttaaggaaacacctaactctactttattaatccgcattttttgttttatattgtatatacattttatt
gi|10 : ttgaaatcggagtgccccaaggtttggaccccgggtgtactgtgtgttttcctaacctatcggaaacatctcttagaaccatcgcatgcaatatcacgacaatgcagatgacactcaaatatgcatcgtgatagagcccactgatgacttaggaaatgtttcaggcgtcctttcttagtaactgtctcacgggcatcagatcatgaatgtgtactaatcttctaaagttaaaccaagatacaacagaatgaatgcttttttttttcccaagcaaagagcaaaagatgttccagattttgaactttcgtttgacagtaacgctctttgttcaaaatcttgggattctattaattttgacaaaacattaaatatggaaaaacagtgcacctcaacctcaaatatgttttatgaactgtagaaacatcagctgcattcgattttacatttcggaggatgcccgcaaaactctcatcaactcgcttgctggaaactatatgctttatggcatctgtTGGGTGCTTTTTCCT--CCCAAGCAGAAAGTGAATGATGTTCCAGATTTTGAACCTAAGTATTTGACAATAACGCTATTTGTGAA-TTTATGAATG--TACATT-----TGTTAAAAAT-CTT-GAATTTTAT---TTTTGACAAAACT--TTAAATATGGAAAAACAGTGCA-CCT---CAACCATAA-G
gi|11 : --TTGTGAAACT-----ATACCTACATTAATTTTGTTAAAAAT-CTT-GGATTGCAT---TTT-GACAAAACC--TT-----T----AAACAGTGCA-CCT---CAACCATAATACAT--GTTTTA--TGAAC-AT-T--GAAACATCAGCCGCATTCA-ATa
gi|13 : ccagtctttcaagcttcCAGAAAGTAAGTGATGTTCCAGATTTTGAACTAGCGT--TTGGCAATAAC--------------------ATAC-----TT-----TGTTAAAAACATTT-GGATTTTA-----TTTGACAAAACT--TTAAATATAGA
gi|15 : TTTTATTAATCTGTA---TTTTTTGTTT------TATATTATA--T---ATATA--TTTTATT
gi|16 : CAAAACC--TTGAATATGGAGAAACAGTGCA-CCT---CAACCATGA-GAAC--ATT-----TGA---AT-A--GAAACATCAGCCGCATTCA-ATTTTAgcccatgcttgtcaaatgcattagagctttaagtatgttgcgct
gi|18 : gtgT-A--GAAACATCATCTGCATTCG-ATCTTACATTTCGGAGGATGCCTGCAAA-ACCCTCATCAAGT-----ACCTGTGACCT
gi|2 : tTTAGAATAGGTGTGCCACCAGCCTGTGCTTGGAACACCAAAACTATATTGTATGTTCTCAAAGCCGATTCGGTGAAAC-TGTC----GACTTCATGACACG-AACATCA--ACATATATGCAGATGACACGCAAATCTACATTGTGGTCGAACC
gi|2 : c---TTTTGACAGAACCCTTTGCAT-TGGAAAAACA-TGCAATCG---CAATAACAA-GGTC--GTGCTACTTGAAC-AT-GTCGGAA-ATTGGGCGTATCCGCAGTGTAC-CTTCAG-GTTTGCATGTAAGTACGCTCGTCAACTTATACTCTTGTTACATCTCGACT---------GGACCACAGCAACCGTCTTGATTTATGGCCATTAACAAGCAGCTGACGGA--------------TAAGCTGCAAGAGAGTAACAAA-ACACAGGCAGCGTCCGACT--TTATTACGTGCGAAAACGTGAAATCGGACCTATA-TAACACCGGTACT-TAATGATGCACCTAACACTGGCTTCatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgcttcattttgacagaaccctttgcattggaaaaacatgcaatcgcaataacaaggtcgtgctacttgaacatgtcggaaattgggcgtatccgcagtgtaccttcaggtttgcatgtaagtacgctcgtcaacttatactcttgttacatctcgactggaccacagcaaccgtcttgatttatggccattaacaagcagctgacggataagctgcaagagagtaacaaaacacaggcagcgtccgactttattacgtgcgaaaacgtgaaatcggacctatataacaccggtacttaatgatgcacctaacactggcttc
gi|20 : cttagaataggtgtgccaccagcctgtgcttggaacaccaaaactatattgtatgttctcaaagccgattcggtgaaactgtcgacttcatgacacgaacatcaacatatatgcagatgacacgcaaatctacattgtggtcgaaccatctggacaattcgggaggaccatatcaccaagacccaattaattgttctctgacatccgtaatggatgaagcatcaattttcctagctggatcaggaacaagaccgaactgaggttttcgcttccctgaaactcgcgctataggacgtagctgaactaccagcatctcgtttcgagctgtatcattcgatgccttcccggacgtaaaactatatggtgcttcaTTAACTGTAAATACTATCATGT-AC--------TGCA-TAGT-T--TTGATATCTT-TAAGGAAACGCTTAATTCTA
gi|21 : TTTTATTAATCTGCATTTTTTTTTGCTT------TATATTGTA--CAGAATATA---TTTATTa
gi|22 : TCGA-TTTGGCTCCCCC----CCTCTCTCTGGAACTC-TTTA-ACCGTGAAAGTGAgcccatgcttg
gi|3 : AAAAACAGTGTA-CTTGAACAACC-TAA-GAACATGTTTTA--TGAAC-ATTA--GAAACATGAGCCGCATTCA-ATCCTACATTTCGGAGGATATCTGCAAA-ACCCTCATCAATT----CGCTTGTCACTTTTCTACTAGACTACCTGAA-------AACTAGA---CTTTATGA---------------TGTCAGTAAACACTTTACTTGTAAGCTGC-AGAAAGT--TCAA-AATCC-ACAGCA--CGGGT-ATAACT-CGTACGATGT----AAAGCGAAC--ACA-TTACCCCAGT-TTTGAAGGATTCTC----CAGTGGTTCCCGGTAGAATATA------------AGTCCAGTACAAAATCTTATCTTCGTATACAAAGCAGTATACAAAGCAGTGAACAATCAAGCTCCTCGATA---------TGATCTTGTGAACATTTA---A-TCTCCA-GCTCGTTC-CCTCCGTTCGAAAGAATCAGTGCGATTAAAAGTTCCAAAA-CC--AGCG--GTA-----------------GTTGTC-GTTTCGA-CTTTGCAGCCTC----C-ACTCTCTGGAGCAC-TTTA-CCCGTCAAATGAAGAAATGTCCATTCATTATATACCTTT--C---------AAAAGGA--TTTAAAAACTTATCTTTTT-AAACA-G--CATTTGATTGTTAACTG-AAATATTATCATGC-AC--------TGGA-AGGT-T--TTGACATCTT-TAACGATGCAC-TA----TATTTTATTAATCTGCA---T
gi|4 : ttatatattaatA----------TACAA--CAG--AATAATCAAGCTCCGCAATA-C---TTACTGATCTTGTGAACATTTGTTACCTCTCCAAACTCGTT--------TTCCAAAG----A-TGCA---------TCCAAAAACCAGAGAG--GTAGCTACATACCGGAAACCGCAGCCAGTTTCGACTTTTGCTGCCTTCCTGC-TCCCTCTGGAACTCATTTACCCCGTGAAACTGAGAAATGGCC---CAT------CATTTGTTGGCGTTTTAAAAAGGAG-TTTAAAAATTTTCCTTTTTAAAACAAGCACATTTGACCGTTAACTGT---TATTA--AAGTGAC--------TGGA-TGATATGGTGGACATTTT-TAAAAG-------AACCC----TTAT-----TGCA---TATTT--TTT------TATATTGTGACT---ATATG--CTTTATT
gi|5 : aaCTGTAAATACTATCATGT-ACCGGAGTACTGGA-AAGT-T--GTAACATCTT-TTATGATACACTTAACTCTATTTTATTAATCTGCA---TGTTTTGTTT------TATATTGTA--T---ATATGTCTTTTATT
gi|7 : aattGATTTAAAAACTTATTTTTTT-AAACAAG--CATTTGACTGTTAACTGTAAATACTCTCATGT-AC--------TGGA-AAGT-T--TTCACATCTT-TTACGATATACTTATCTCTATTTTATTAATCTGCA---TGTTTTGTTTTACATGTATATTGTA--T---ATGTC--TTTTATTgccaatgcttgtcaagcgcattagagctttacttttttcaaaatagtatactgcgcgctatacaaattattgtattgtattgtaattctatataatagatcccctcaaaaaatatggataactt
gi|8 : atgGATTTAAAAACTTATCTTTTT-AAACAAG--CATTTGAAGGTTAACTGTAAATACTATCATGT-AC--------TAGA-AAGT-T--CTGACATCTTCTTATGATACACTTAAC---AGTTTATTATTCTGCA---CCTTTTGTTT------TAGATTGTA--T---ATGTA--TTTTATTgctaatgcttgtcaaacacactagagctttactttaagtatattgttctatacaaattaccgtactgtgttgtattgttgtat
gi|9 : gAAGCTGC-AGAATGT--TTAACGTACA-GCAGCA--CGGATGATAACT-CGTACGATAA----AAAGCGAAC--ACAGTTA-TCCAGT-TT-GGAAAAATTTC----CTCTGGCGCACAGTGGAATA-AATGTGTTGATACA---------AAATTCTTTTCTTC--ATA----------TAGAAAGCACTGAATAGCCATTCTCCGCGATA-CACATTACTGATCTgtcatacttgtcaagcgcattagagctttatttaaagtatattgcgctattcaaattatcttattgta
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): ATCTCGACAAAGTCCCTTACGATGGAAAAAACAATGCAGTTCCGTTGCAAAGATGCATGTTACATGCATGCTACGTCGCGAATAGAGGCACATCGAGCCGTTTAAAACTGAAAGATGCTTGTAAAATTCTGTGTGAATTCTCTCGTTACATCGGGAGGCTGGACTATAGCGCGTTAACGCTTTTACTGTATGGAATTAACAGAAAGCAGTTCACAAACTCCAAGCGAAATTCAAAACACGGCTG
Unaligned ( gi|12 ): AATTTTATCAATTGATTGATACTGTGTATATCTTTTATTGCCCATGCTTGTCAAGTGCATTAAAAATATACTATAAGTATATTGCGCTAAACAAATGAAAGCATTGTATTATTTGGTA
Unaligned ( gi|14 ): ACTCTTATCTACTTATTATATGTTTTTGTTTTTTAATATTGTATAAGGATATATTTTTTATTGCATGCTTGTCAAGCGATTAGAGTATTGTTTT
Unaligned ( gi|17 ): ACTTATAAATTGTGCATTTTTATATGTTCTCGGATTTACTACATAACTTGAGAATAGGAATTCATGGACATCATAATCAGTC
Unaligned ( gi|19 ): TTATATTGCATATGTCTTTTATTGCCAATGCTTGTCAAGCGCATTAGAACTTTACTTTAGGTTTCA