lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 11 22 22222222 111 2222222 3333 1111 1111 1111 11111111 222222222222 555555555555555555555555 11111 1111 11 111 44444444444444444444444444444444444444444444444444444444444444444444444444 111111 1 1111 111 33333333333333333 2222 11111 11 2 1
lowQualScore : 0 0 0 0 8 99 8 88 33 0 8 11 8 99999999 0 0 444 8 5555555 3 7777 3 8 6 2222 5 0000 5 0000 66 3 3 999 2 55555555 2 2 3 3 6666 44 55 7 555555555555 5 999999999999999999999999 6 22222 0000 11 000 77777777777777777777777777777777777777777777777777777777777777777777777777 99 66 111111 5 4 0 5 66 1111 88 555 66666666666666666 1 5 3 6 5 3333 9999 55555 0 000 44 0 0 6
lowQualScore : . . . . . .. . .. .. . . .. . ........ . . ... . ....... . .... . . . .... . .... . .... .. . . ... . ........ . . . . .... .. .. . ............ . ........................ . ..... .... .. ... .......................................................................... .. .. ...... . . . . .. .... .. ... ................. . . . . . .... .... ..... . ... .. . . .
lowQualScore : 0 0 0 0 0 00 0 88 88 8 2 88 0 00000000 8 8 000 0 8888888 0 0000 2 0 6 1111 0 6666 0 6666 11 3 3 222 2 77777777 9 9 1 1 5555 22 11 4 666666666666 0 777777777777777777777777 7 66666 4444 99 000 22222222222222222222222222222222222222222222222222222222222222222222222222 22 99 000000 0 5 1 0 99 0000 99 666 22222222222222222 3 7 6 3 7 4444 3333 88888 6 999 00 0 0 0
consensus : GAAACT-GAA-GCCTGCA-TATTTTG-ACAA-T--GGATTT-TCTA-CAAG-ATAACAAAGCAGA-AAC--------TAATA---CCGG-A-GGCT--GACTAGCGTGCGCTCC-G-TCGTATC-CAGATATA----AAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------A-AAA-N---AAT----------GAGAGAGG-AGGGGGA----TGTA---ACCTGTT--ACTG---TTT-------A---AA--AT----AA---A---AAT--------------CAA-ATT-T-A----A-N---CAC-A-TGAG-CCTA--TTTT-C---CA-AAGGTCAAA-G--G---AAAT-AGGG---CAAA----NT---G--TCT--GTACT-TATTAAGTA-TGG--TTC-T--AAAATTT--AACAAAAACGATNNAGTG-AAT-ACATCTGAAATGAA
Reference ( gi|4 ) : GAAACT-GAA-GCCTGCA-TATTTTG-ACAA-T--GGATTT-TCTA-CAAG-ATAACAAAGCAGA-AAC--------TAATA---CCGG-A-CGCT--GACTAGCTTGCGCTCC-G-TCGTATC-CAGATCTA----AAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------A-AAA-T---AAT----------GAGAGGGG-GGGGGGG----TGTA---ACCTGTT--ACTG---TTT-------A---AA--AT----AA---A---AAT--------------CAA-ATT-T------A-T---CAC-A-TGAG-CCTA--TTTT-C---CA-AAGGCCAAA-G--G---AAAT-AGGG---CAAA----CT---G--TCT--GTACT-TATTAGGTA-TAA--TTC-T--AAAATTT--AACAAAAACGATCTAGTG-AAT-ACATCTGAAATAAAT
gi|1 : GAAATT-GAAAGCCTGTA-TATTTTG-ACAA-TG-GGATTT-TCTA-CAAG--T-ACAAAGCAGA-AAC--------AAATA---CCGG-AGGGCT--GACTA
gi|5 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtaGATACT-AAA-GCCTGCA-TATTTTG-ACAA-T--GGATAT-TCTA-CAA--ATAAGAAAGCAGA-AACTATTAGTGTAATA---CTGG-A-GGCG--GACTAtaattgctatacgtttgaattttaatgaacagcttaaacaacgtgcgctccgatcgtatccaaatataaagaatcttggaaatggattcaatggggggaattgcgggagttgcatcccccccccatttgaaaaaaaaaagacggagggggatgtactgctaactggtttttaaagaatttcaacaacatgaacctatttttttcaaaggtcataaggaatggggcaaaaatgccgattcttggtacttattaggtatggttctaaaaattaaacaaacgatttagtgttatacatttgaaatgaagtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|3 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattaGAAACTTAAA-GCCTGCATTATTTTGAACAA-TCAGGATTT-TCT--CAAG-TCAA-AATGCGAA-AGC--------T-ATAGCCCCGG-A-taattctatattttatagttcaattttatgacaatctatagcaagggctttttttttagatttaaagaatcttgaaatagattcaattgggcagttgcggaggttgcaccccccttccttt
gi|11 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttaT-GAA-TTCTGCA-TATTTTG-ACAACT--GGAGTT-TCTATCAAGTATAGTA--GTATATAGT--------TAA-------GA-A-TTTTATGACTAATTATCGTTCTTG-TCGTATC-CATA-ATA----AAG--ATCT----TG-AGAATAA--TGAAT-T-C----ATGGAGG-------A-G-AT-GC------TT----G--CACgtgggccagactattaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagaggagaatcttgaaaagtggatatcagatgggggcagtttgccgggggttgcactcctccccc
gi|10 : AA-T--GGATTTATCTA-AGAG--TAACAAAGCAGA-AAC--------TAATA---CCGGAA-GGTT--GACTAatcc
gi|2 : tacaggataaaagcttaaattaactaagcatgAGCGTGCGCTC----TAGT-TC-CGGATCTA----AAGGAATCTGTTTTG-A----AT--TCGAT-T-CA---GTGGGAG-------ATG-TT-GC-GGGGGTT----G--C----CACCCCCATTTCT------------A-AAA-TAAAAAT----------GAGA---G-AGGGGAA----TGTG---ACCTGTT--tgattctataggtctgaatttatgacaatctacagaaaggcttatcacagatataaagaatttgaaatgggttcaatgggacagtttgcgggggttgaaaccccgccctttgaataaaaa
gi|1 : ggggggggttgaagcttgttttgctaccttccgggatacaaatctttgcgtttcgtttctttggggggagagggggtacataattttattatttggatatgtaaacaagctcaagactgagatatctttgacaaatgagacttcaattaagtaacaaagcaaacgctgataagtttaataaccggagcgcttaggctgactatactctagacaatctacagcaagaatctaattaaaacTGCGCTCC-GATCGTATC-CAAATATA----AAG-AATCT----TGGA----AA--TGGAT-T-CA---ATGGGGGG------A-A-TT-GC-GGGAGTT----G--CATCCCCCCCCCATTTGA------------A-AAA-----AAA----------AAGA-CGG-AGGGGGA----TGTA-----CTGCTA-ACTGGTTTTT-------A---AA-----------------------------------GA-ATT-TCA----A-C---AAC-A-TGAA-CCTATTTTTT-T---CA-AAGGTCATA-A--G---GAAT-GGGG---CAAAAATGCC---GATTCTTGGTACT-TATTAGGTA-TGG--TTC-T--AAAAATT--AA-ACAAACGATTTAGTGTTAT-ACATTTGAAATGAA
gi|10 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtagaaattgaaagcctgtatattttgacaatgggattttctacaagtacaaagcagaaacaaataccggagggctgactataattgctatacgtttgaattttaatgaacagcttaaacaacgTATCACAGATATA----AAG-AAT-T----TG-A----AA--TGGGT-T-CA---ATGGGAC-------A-GTTT-GC-GGGGGTT----G--AA--ACCCCGCCCTTTGA------------ATAAA-gtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|15 : tacaggataaaagcttaaattaactaagcatgaatggatttatctaagagtaacaaagcagaaactaataccggaaggttgactatgattctataggtctgaatttatgacaatctacagaaaggctC-CAGATATA----AAG-AATCT----TG-A----AA--TGGGT-TCCA---GTGGGAC-------A-G-Taa
gi|5 : gatgactttaattctatagttgaattttatgtacaatcctacaggaagagctttaccAGATTTA----AAG-AATCT----TG-A----AA--TAGAT-T-CA---ATTGGGC-------A-G-TT-GC-GGAGGTT----G--CACCCCCCTTCCTTT
gi|19 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattagatactaaagcctgcatattttgacaatggatattctacaaataagaaagcagaaactattagtgtaatactggaggcggactataattctatattttatagttcaattttatgacaatctatagcaagggctttttttttATCTACAGCAAG-AG-CT----T--------A--TAAAT-C-CAGATATGGGAC-------A-G-TT-GC-GGGGGTT----G--AAACCCCC
gi|3 : tttatgacaAG-AATCT----TG-A----AAAGTGGATAT-CAG--ATGGGGGC------A-G-TTTGCCGGGGGTT----G--CACTCCTCCCCC
gi|7 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttagaaacttaaagcctgcattattttgaacaatcaggattttctcaagtcaaaatgcgaaagctatagccccggagtgggccagactattaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagagg--TGGAT-T-CA---GGGGAGG-------A-T-TT-GC-GGGGGTT----G--CACACACCCCC---TTGA------------A-AAA-TCNNNNN----------NNNNNNNN-NNNNNNN----NNNN---NNNNNNN--NNNN---NNN-------N---NN--NN----NN---N---NNTCA------------CAG-ATT-TGAA---A-T----AT-A-AAAA-CACA--T---------G-AAGG--AAA-G--G-----------G---CAAA----AT---G--TTT--GTCCT-CA-AAAGTA-TGG--TTC-T--ACAATTT--AAAAAAAAC
gi|8 : ggGGAT-T-CA---A--GGAT-------A-G-TT-AT-GGGATTTATCTG--CACCCCCCCCCC--TTGA------------A-AAAAT---CAA----------GAGAAGAG-AGAGAGAGATTTGCACACATGTGTT--ACTG---TTTTTATCTTA---GA--TT----TT---A---AAT--------------TTA-AAT-T------A-A---CAC-AATGGA-CCTA--TTT--C---CA-AAGGTC-AA-G--G---AAAT--GGG---CAAG-----------------ATA------TAAGTA-TCG--TTT-C--TAAACTT--AGCAAAAAAAATTAAGAGAAATGACATCAGAAATGcccgatatatatatatatatatatagtgaacctcatctgaaatgaggtcgacgaggacctaacagggaggggggggggagggttgca
gi|21 : ggcGGAT-T-CA---A-GGGGG-------A-G-TT-T----GGGTT----G--CACCCCCCCCCgg
gi|6 : ttggcGAT-T-CA---GGGGGGGGGGGGGTA-G-TT-CC-GGGGGTT----G--CATCCCGCCCCCTTTGAA------------A-AAA-A---AAT----------G---GAGA-GAGAGAT----TGTA---TCATATT--ACTG---TTT-------T---AA--A-----AA---A---AGTGGTGTTTTTTTTCGTAG-ATT-TGAATTAA-TTAACAC-A-TGAG-CCTA--TTTT-C---CG-AAGGTCAAA-G--G---AAAA-AAGG----AAA----CT---G--TCC--GTCCT-CATTAACTA-TTG--TTC-T--AAAATGT--A----------TATAGTG-AAT-GCATCTGAAATG
gi|20 : TGGGAC-------A-G-TT-GC-GGGGGTT----G---AAACCCCCGCTCTTTGA------------A-GAA-A---AAggccgacgagaacgtaacccgagggaggggagtgtaaccccccgccattttaaactaagaatgctaaa
gi|9 : GAGG-------G-G-TT-AT-GGGGGTT----GGCCATACCCGCCTCCTTTGATTTTGAAAAAAAA-AAA-A---AGTTGGAGCACGGGAGAGAGGAGGGGGGG----TGTA---ACCTGTTTCAGTC---TTT-------A---AA--TT----AACTCACTCAAT--------------CAA-GCC-C--------T---C-----TGAG-------TTTT-C---CA-AAGGTCAAATG--G---TAATCAGGGAA-CAAA----TTTTAG--TC-----ACTCTACTAGATGTTGG--TTCGT--AAAAaaag
gi|16 : tggggatctagagcGAG----TGTA---ACTTGTT--AC-G---TTT-------AAAGAA--ATTTTCAA---T---GAT--------------TAA-ATT-T------A-A---CCC-ACTGAGTCCTA--TTTTGC---CAGAAGGTCAAA-G--GGAAAAGT-GGGG---AAAA----
gi|13 : ----TGTA---ACCTATT--AGTT---TTT-------A---AACCAT----TC---A---AATTT------------CAATATTGT------AATAAACACCA-TAA--CCTA--TTTT-C---CA-AAGGTCAAA-AAAG---AAAT-AGGG---CAAA----AT---G--TCT--GTACT-TATTA-GTA-TA
gi|12 : AA-ATT-T------A-AA--CTC-A-TGAA-ACTA--TTTT-TTTTCA-AAAG------G--A---AAAT-AAGGGGCCAAA----AT---G--TCTT-GTCCT-TATTAAGTA-TGCGTTTC-TGTAACATTTTAAACAAAACCGATAGAGTA-AAT-ATATtata
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CGGATTCAAGGGGGGAGGCCCTGGGGGTAGTGTTGTGAGGCCACTTTGAAAAATCAAGCGAGATTGTAACATTTTACTGTCTTTAAAAATGGCTGTCCT
Unaligned ( gi|17 ): AGGGAGAGGACGGGGTGAGCGTTGTTTTGTCACTTTCCGGATACAATTCACTTGCTATTCGTTTCATTTTTTCCTGTATCTAACTTCTATTTGGGC
Unaligned ( gi|18 ): CTCAACAAAACAATTCATTCGCGGATCCAAAGGGGAGGGGTGGGCGGGTTTCCGGGGTTGAATCCCTCTTCTCCCCCTTTCT
Unaligned ( gi|22 ): TCGCTTTAGTTTTTCTGTACATAATTCTATTTGGCTATG
Alignments
lowQualScore : 1 11 1111111 44444444444444444444444444444444444444444 111 1111 1111 1111111 222222222222 3333333333333333333 11 11 66666666666666666666666666666666666666666666666666666666666666666666 111 11111 11111111111111 111 11111 555555555555555555555 1 111 11111
lowQualScore : 6 6 6 6 6 6 1 77 5 5 5 66 5555555 77 55555555555555555555555555555555555555555 5 0 2 222 0 6 1 5 0000 5 0000 55 3 3 888 1 4444444 2 2 2 2 6666 33 2 4 222222222222 4 4444444444444444444 5 5 666 4 00 8888 00 888 99999999999999999999999999999999999999999999999999999999999999999999 222 66 88888 4 0 6666 777 66 4 66666 1 99999999999999 3 5 2 5 5 555 22222 111111111111111111111 22 3 000 6 66666
lowQualScore : . . . . . . . .. . . . .. ....... .. ......................................... . . . ... . . . . .... . .... .. . . ... . ....... . . . . .... .. . . ............ . ................... . . ... . .. .... .. ... .................................................................... ... .. ..... . . .... ... .. . ..... . .............. . . . . . ... ..... ..................... .. . ... . .....
lowQualScore : 7 7 7 7 7 7 4 99 7 7 7 66 3333333 99 33333333333333333333333333333333333333333 7 2 5 888 8 7 6 0 6666 0 6666 55 1 1 555 4 0000000 7 7 9 9 1111 99 4 8 888888888888 4 1111111111111111111 7 7 000 4 66 2222 66 888 22222222222222222222222222222222222222222222222222222222222222222222 000 11 66666 4 8 9999 888 11 4 77777 0 44444444444444 0 0 0 0 7 777 55555 000000000000000000000 00 3 888 7 77777
consensus : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---A--AAT----------GAGA-GA-G-GAGGGGGA-T--GTA---ACCTGTT--ACTG---TTT--AAA--NTAA-----A--A--AT--------------CAA-ATT----TAAA--------C-AC-A-TGAG-CCTA--TTTT-C---CA-AAGGTCAAA-G--G---AA--AT-AGGG---C-AAAAT---G-----TCT--GTACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNTAGTG-AAT-A-CAT-CT-----GAAATGAA
Reference ( family-2092 ) : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---N--AAT----------GAGA-GA-G-GAGGGGGA-T--GTA---ACCTGTT--ACTG---TTT--AAA--ATAA-----A--A--AT--------------CAA-ATT----TAAN--------C-AC-A-TGAG-CCTA--TTTT-C---CA-AAGGTCAAA-G--G---AA--AT-AGGG---C-AAANT---G-----TCT--GTACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNNAGTG-AAT-A-CAT-CT-----GAAATGAA
gi|1 : GAAATT-GAAAGCCTGT-A-TAT-TTTG-ACAA-T--GGGATTT-TCTA-CAAG--TA------CAAAGC--AGAAAC--------AAAT----------A---CCGG-------AG--GGCT-GACTA
gi|1 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtaAACGTGCGCTCCGATCGTATC-CAAATATAAAG-AATCT----TGGA----AA--TGGAT-T-CA---ATGGGGGG------A-A-TT-GC-GGGAGTT----G--CATCCCCCCCCCATTTGA------------AA-AA---A--A-------------AAA-GACG-GAGGGGGA-T--GTA-----CTGCTA-ACTGGTTTTT--A------AA-----G--A--AT-------------------TT----CAAC--------A-AC-A-TGAA-CCTATTTTTT-T---CA-AAGGTCATA-A--G---GA--AT-GGGG---CAAAAAT---GCCGATTCTTGGTACT-TATTAGGTA-TG-GTTC---TAAAAATT--AA-ACAAA---CG----------------ATTTAGTGTTAT-A-CAT-TT-----GAAATGAAtaattgctatacgtttgaattttaatgaacagcttaaacaacgtgcgctccgatcgtatccaaatataaagaatcttggaaatggattcaatggggggaattgcgggagttgcatcccccccccatttgaaaaaaaaaagacggagggggatgtactgctaactggtttttaaagaatttcaacaacatgaacctatttttttcaaaggtcataaggaatggggcaaaaatgccgattcttggtacttattaggtatggttctaaaaattaaacaaacgatttagtgttatacatttgaaatgaagtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|10 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtagaaattgaaagcctgtatattttgacaatgggattttctacaagtacaaagcagaaacaaataccggagggctgactataattgctatacgtttgaattttaatgaacagcttaaacAA-T--GG-ATTTATCTA-AGAG--TA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGGA------A---GGTT-GACTAgtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|10 : tacaggataaaagcttaaattaactaagcatgTATCACAGATATAAAG-AAT-T----TG-A----AA--TGGGT-T-CA---ATGGGAC-------A-GTTT-GC-GGGGGTT----G--AA--ACCCCGCCCTTTGA------------AT-AA---A--AAtgattctataggtctgaatttatgacaatctacagaaaggcttatcacagatataaagaatttgaaatgggttcaatgggacagtttgcgggggttgaaaccccgccctttgaataaaaa
gi|11 : tacaggataaaagcttaaattaactaagcatgaatggatttatctaagagtaacaaagcagaaactaataccggaaggttgactatgattctataggtctgaatttatgacaatctacagaaaggctT-GAA-TTCTGC-A-TAT-TTTG-ACAACT--GG-AGTT-TCTATCAAGTATAGTAGTATATAGTTAAGAATT--------TTAT-----------------------------GACT-AATTATCGTTC---TTG-TCGTATC-CATA-ATAAAG--ATCT----TG-AGAATAA--TGAAT-T-C----ATGGAGG-------A-G-AT-GC------TT----G--CAC
gi|12 : AA-ATT----TAAA--------C-TC-A-TGAA-ACTA--TTTT-TTTTCA-AAAG------G--A---AA--AT-AAGGGGCC-AAAAT---G-----TCTT-GTCCT-TATTAAGTA-TGCGTTTCTGTAACATTTTAAACAAAAC---CG----------------ATAGAGTA-AAT-A-TATACTATCTGGAAATGGAatcc
gi|13 : -T--GTA---ACCTATT--AGTT---TTT--AAACCATTC-----A--A--ATTT------------CAATATTGTAATAAA--------C-ACCA-TAA--CCTA--TTTT-C---CA-AAGGTCAAA-AAAG---AA--AT-AGGG---C-AAAAT---G-----TCT--GTACT-TATT-AGTA-T
gi|15 : C-CAGATATAAAG-AATCT----TG-A----AA--TGGGT-TCCA---GTGGGAC-------A-G-Tatata
gi|16 : gatgactttaattctatagttgaattttatgtacaatcctacaggaagagctttacc-T--GTA---ACTTGTT--AC-G---TTT--AAA--GAAATTTTCA--ATGAT--------------TAA-ATT----TAAC--------CCAC---TGAGTCCTA--TTTTGC---CAGAAGGTCAAA-G--GGAAAA--GT-GGGG---A-AAA
gi|19 : gagA--TAAAT-C-CAGATATGGGAC-------A-G-TT-GC-GGGGGTT----G--AAACCCCC
gi|2 : tttatgacaatctacagcaagagcttAAGCT-CAA-GACTGAGA-TATCTTTG-ACAAAT--GA-GACT-TCAA-TTAA-GTA-----ACAAAGC--AAACGC--------TGATAAGTTTAATAA---CCGGAGCGCTTA---GGCT-GACTA
gi|2 : ggggggggttgaagcttgttttgctaccttccgggatacaaatctttgcgtttcgtttctttggggggagagggggtacataattttattatttggatatgtaaacAGCGTGCGCTC---TAGT-TC-CGGATCTAAAGGAATCTGTTTTG-A----AT--TCGAT-T-CA---GTGGGAG-------ATG-TT-GC-GGGGGTT----G--C--CACCCCCATTTCTAA------------AATAA---A--AAT----------GAGA-GA-G-G---GGAA-T--GTG---ACCTGTT--tactctagacaatctacagcaagaatctaattaaaacagcgtgcgctctagttccggatctaaaggaatctgttttgaattcgattcagtgggagatgttgcgggggttgccacccccatttctaaaataaaaatgagagaggggaatgtgacctgtt
gi|20 : ggggggggttgaagcttgttttgctaccttccgggatacaaatctttgcgtttcgtttctttggggggagagggggtacataattttattatttggatatgtaaacaagctcaagactgagatatctttgacaaatgagacttcaattaagtaacaaagcaaacgctgataagtttaataaccggagcgcttaggctgactatactctagacaatctacagcaagaatctaattaaaacTGGGAC-------A-G-TT-GC-GGGGGTT----G---AAACCCCCGCTCTTTGA------------AG-AA---A--AA
gi|21 : GGAT-T-CA---A-GGGGG-------A-G-TT-T----GGGTT----G--CACCCCCCCCCaaag
gi|3 : ttggcGAAACTTAAA-GCCTGC-ATTAT-TTTGAACAA-TCAGG-ATTT-TCT--CAAG-TCA-----A-AATGC--GAAAGC--------T-AT----------AGCCCCGG-------AGTGGGCCAGACTA
gi|3 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttaAG-AATCT----TG-A----AAAGTGGATAT-CAG--ATGGGGGC------A-G-TTTGCCGGGGGTT----G--CACTCCTCCCCCttaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagaggagaatcttgaaaagtggatatcagatgggggcagtttgccgggggttgcactcctccccc
gi|4 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttagaaacttaaagcctgcattattttgaacaatcaggattttctcaagtcaaaatgcgaaagctatagccccggagtgggccagactattaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagaggGAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---CGCT-GACTAGCTTGCGCTCCG-TCGTATC-CAGATCTAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---T--AAT----------GAGA-GG-G-GGGGGGGG-T--GTA---ACCTGTT--ACTG---TTT--AAA--ATAA-----A--A--AT--------------CAA-ATT----T-AT--------C-AC-A-TGAG-CCTA--TTTT-C---CA-AAGGCCAAA-G--G---AA--AT-AGGG---C-AAACT---G-----TCT--GTACT-TATTAGGTA-TA-ATTC---TAAAATTT--AACAAAAA---CG----------------ATCTAGTG-AAT-A-CAT-CT-----GAAATAAA
gi|5 : GATACT-AAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATAT-TCTA-CAA--ATA-----AGAAAGC--AGAAACTATTAGTGTAAT----------A---CTGG-------A---GGCG-GACTAt
gi|5 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattaAGATTTAAAG-AATCT----TG-A----AA--TAGAT-T-CA---ATTGGGC-------A-G-TT-GC-GGAGGTT----G--CACCCCCCTTCCTTTtaattctatattttatagttcaattttatgacaatctatagcaagggctttttttttagatttaaagaatcttgaaatagattcaattgggcagttgcggaggttgcaccccccttccttt
gi|6 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattagatactaaagcctgcatattttgacaatggatattctacaaataagaaagcagaaactattagtgtaatactggaggcggactataattctatattttatagttcaattttatgacaatctatagcaagggctttttttttGAT-T-CA---GGGGGGGGGGGGGTA-G-TT-CC-GGGGGTT----G--CATCCCGCCCCCTTTGAA------------AA-AA---A--AAT----------G----GA-G--AGAGAGA-TT-GTA---TCATATT--ACTG---TTT--TAA--A-AA-----A--A--GTGGTGTTTTTTTTCGTAG-ATT----TGAATTAATTAAC-AC-A-TGAG-CCTA--TTTT-C---CG-AAGGTCAAA-G--G---AA--AA-AAGG-----AAACT---G-----TCC--GTCCT-CATTAACTA-TT-GTTC---TAAAATGT-------------------------------ATATAGTG-AAT-G-CAT-CT-----GAAATGA
gi|7 : --TGGAT-T-CA---GGGGAGG-------A-T-TT-GC-GGGGGTT----G--CACACACCCCC---TTGA------------AA-AATCNN--NNN----------NNNN-NN-N-NNNNNNNN-N--NNN---NNNNNNN--NNNN---NNN--NNN--NNNN-----N--N--NTCA------------CAG-ATT----TGAA----------AT-A-TAA------------------A-AA---CACA-T--G---AAGGAA-AGGG---C-AAAAT---G-----TTT--GTCCT-CA-AAAGTA-TG-GTTC---TACAATTT--AAAAAAAACCCCGATATATATATATATATATATAGTG-AAC-CTCAT-CT-----GAAATGAggccgacgagaacgtaacccgagggaggggagtgtaaccccccgccattttaaactaagaatgctaaa
gi|8 : ggGGAT-T-CA---A--GGAT-------A-G-TT-AT-GGGATTTATCTG--CACCCCCCCCCC--TTGA------------AA-AA---ATCAA-----------GAGAAGA-GAGAGAGAGA-TTTGCACACATGTGTT--ACTG---TTTTTATC--TTAG-----A--T--TT--------------TAA-ATT----TAAATTAA----C-AC-AATGGA-CCTA--TTT--C---CA-AAGGTC-AA-G--G---AA--AT--GGG---C-AAGAT---A-------------------TAAGTA-TC-GTTT---CTAAACTT--AGCAAAAA---AA----------------ATTAAGAGAAATGA-CAT-CA-----GAAATGAggtcgacgaggacctaacagggaggggggggggagggttgca
gi|9 : ggcGAGG-------G-G-TT-AT-GGGGGTT----GGCCATACCCGCCTCCTTTGATTTTGAAAAAAAAA-AA---A--AGTTGGAGCACGGGAGA-GA-G-GAGGGGGGGT--GTA---ACCTGTTTCAGTC---TTT--AAA--TTAA-----CTCA--CT--------------CAA---T----CAAG--------C-CCTC-TGAG-------TTTT-C---CA-AAGGTCAAATG--G---TA--ATCAGGGAA-C-AAATTTTAG-----TC-----ACTCTACTAGATGTTG-GTTCG--TAAAAgg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CGGATTCAAGGGGGGAGGCCCTGGGGGTAGTGTTGTGAGGCCACTTTGAAAAATCAAGCGAGATTGTAACATTTTACTGTCTTTAAAAATGGCTGTCCT
Unaligned ( gi|17 ): AGGGAGAGGACGGGGTGAGCGTTGTTTTGTCACTTTCCGGATACAATTCACTTGCTATTCGTTTCATTTTTTCCTGTATCTAACTTCTATTTGGGC
Unaligned ( gi|18 ): CTCAACAAAACAATTCATTCGCGGATCCAAAGGGGAGGGGTGGGCGGGTTTCCGGGGTTGAATCCCTCTTCTCCCCCTTTCT
Unaligned ( gi|22 ): TCGCTTTAGTTTTTCTGTACATAATTCTATTTGGCTATG
Alignments
lowQualScore : 1 11 1111111 44444444444444444444444444444444444444444 111 1111 1111 1111111 222222222222 2222222222222222222 11 11 66666666666666666666666666666666666666666666666666666666666666666666666666 111 11111 11111 11111111111 111 555555555555555555555 1 111 11111
lowQualScore : 6 6 6 6 6 6 1 77 5 5 5 66 5555555 77 55555555555555555555555555555555555555555 5 0 2 222 0 6 1 5 0000 5 0000 55 3 3 888 1 4444444 2 2 2 2 6666 33 2 4 222222222222 4 8888888888888888888 999999 4 00 8888 00 5 66666666666666666666666666666666666666666666666666666666666666666666666666 77 333 4 4 0 0 4 66 33333 33333 4 77777777777 88 5 5 5 555 99 88 111111111111111111111 1 3 000 6 66666
lowQualScore : . . . . . . . .. . . . .. ....... .. ......................................... . . . ... . . . . .... . .... .. . . ... . ....... . . . . .... .. . . ............ . ................... ...... . .. .... .. . .......................................................................... .. ... . . . . . .. ..... ..... . ........... .. . . . ... .. .. ..................... . . ... . .....
lowQualScore : 7 7 7 7 7 7 4 99 7 7 7 66 3333333 99 33333333333333333333333333333333333333333 7 2 5 888 8 7 6 0 6666 0 6666 55 1 1 555 4 0000000 7 7 9 9 1111 99 4 8 888888888888 4 1111111111111111111 000000 4 66 2222 66 0 22222222222222222222222222222222222222222222222222222222222222222222222222 11 999 4 4 8 8 4 11 66666 33333 4 88888888888 00 0 0 7 777 22 33 000000000000000000000 0 3 888 7 77777
consensus : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---A--AAT----------GAGA-GA-G-GAGGGGGA-T--GTA---ACCTGTT--ACT-GTTT--AAANTA--A-----A--A--A-------------T--C--A--A-ATT----T-AAA--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGTCAAA-G--GAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNTAGTG-AAT-A-CAT-CT-----GAAATGAA
Reference ( family-2092 ) : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---A--AAT----------GAGA-GA-G-GAGGGGGA-T--GTA---ACCTGTT--ACT-GTTT--AAANTA--A-----A--A--A-------------T--C--A--A-ATT----T-AAA--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGTCAAA-G--GAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNTAGTG-AAT-A-CAT-CT-----GAAATGAA
gi|1 : GAAATT-GAAAGCCTGT-A-TAT-TTTG-ACAA-T--GGGATTT-TCTA-CAAG--TA------CAAAGC--AGAAAC--------AAAT----------A---CCGG-------AG--GGCT-GACTA
gi|1 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtaAACGTGCGCTCCGATCGTATC-CAAATATAAAG-AATCT----TGGA----AA--TGGAT-T-CA---ATGGGGGG------A-A-TT-GC-GGGAGTT----G--CATCCCCCCCCCATTTGA------------AA-AA---A--A-------------AAA-GACG-GAGGGGGA-T--GTA-----CTGCTA-ACTGGTTT-----TTA--A-----A-------------------------G--A-ATT----T-CAA--------CAAC-A-TGAA-CCTATT-TTTT-TCA-AAGGTCATA-A--GGAAT-G--GGG---CAA-AAATGCCGATTC-TTGGT-ACT-TATTAGGTA-TG-GTTC---TAAAAATT--AA-ACAAA---CG----------------ATTTAGTGTTAT-A-CAT-TT-----GAAATGAAtaattgctatacgtttgaattttaatgaacagcttaaacaacgtgcgctccgatcgtatccaaatataaagaatcttggaaatggattcaatggggggaattgcgggagttgcatcccccccccatttgaaaaaaaaaagacggagggggatgtactgctaactggtttttaaagaatttcaacaacatgaacctatttttttcaaaggtcataaggaatggggcaaaaatgccgattcttggtacttattaggtatggttctaaaaattaaacaaacgatttagtgttatacatttgaaatgaagtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|10 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtagaaattgaaagcctgtatattttgacaatgggattttctacaagtacaaagcagaaacaaataccggagggctgactataattgctatacgtttgaattttaatgaacagcttaaacAA-T--GG-ATTTATCTA-AGAG--TA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGGA------A---GGTT-GACTAgtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|10 : tacaggataaaagcttaaattaactaagcatgTATCACAGATATAAAG-AAT-T----TG-A----AA--TGGGT-T-CA---ATGGGAC-------A-GTTT-GC-GGGGGTT----G--AA--ACCCCGCCCTTTGA------------AT-AA---A--AAtgattctataggtctgaatttatgacaatctacagaaaggcttatcacagatataaagaatttgaaatgggttcaatgggacagtttgcgggggttgaaaccccgccctttgaataaaaa
gi|11 : tacaggataaaagcttaaattaactaagcatgaatggatttatctaagagtaacaaagcagaaactaataccggaaggttgactatgattctataggtctgaatttatgacaatctacagaaaggctT-GAA-TTCTGC-A-TAT-TTTG-ACAACT--GG-AGTT-TCTATCAAGTATAGTAGTATATAGTTAAGAATT--------TTAT-----------------------------GACT-AATTATCGTTC---TTG-TCGTATC-CATA-ATAAAG--ATCT----TG-AGAATAA--TGAAT-T-C----ATGGAGG-------A-G-AT-GC------TT----G--CAC
gi|12 : --A--A-ATT----T-AAA--------C-TC-A-TGAA-ACTATTTTTTT-TCA-AAAG------G--AAAAT-A--AGGGGCC-A-AAATG-----TCTT--GT-CCT-TATTAAGTA-TGCGTTTCTGTAACATTTTAAACAAAAC---CG----------------ATAGAGTA-AAT-A-TATACTATCTGGAAATGGAatcc
gi|13 : -T--GTA---ACCTATT--AGT-TTTT--AAACCATTC-----A--A--A-------------TTTC--A--ATATTGTAAT-AAA--------C-ACCA-TAA--CCTA---TTTT-CCA-AAGGTCAAA-AAAGAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATT-AGTA-T
gi|15 : C-CAGATATAAAG-AATCT----TG-A----AA--TGGGT-TCCA---GTGGGAC-------A-G-Tatata
gi|16 : gatgactttaattctatagttgaattttatgtacaatcctacaggaagagctttacc-T--GTA---ACTTGTT--AC--GTTT--AAAGAA--ATTTTCA--ATGA-------------T--T--A--A-ATT----T-AAC--------CCAC---TGAGTCCTA---TTTTGCCAGAAGGTCAAA-G--GGAAA-AGTGGG---G-A-AAA
gi|19 : gagA--TAAAT-C-CAGATATGGGAC-------A-G-TT-GC-GGGGGTT----G--AAACCCCC
gi|2 : tttatgacaatctacagcaagagcttAAGCT-CAA-GACTGAGA-TATCTTTG-ACAAAT--GA-GACT-TCAA-TTAA-GTA-----ACAAAGC--AAACGC--------TGATAAGTTTAATAA---CCGGAGCGCTTA---GGCT-GACTA
gi|2 : ggggggggttgaagcttgttttgctaccttccgggatacaaatctttgcgtttcgtttctttggggggagagggggtacataattttattatttggatatgtaaacAGCGTGCGCTC---TAGT-TC-CGGATCTAAAGGAATCTGTTTTG-A----AT--TCGAT-T-CA---GTGGGAG-------ATG-TT-GC-GGGGGTT----G--C--CACCCCCATTTCTAA------------AATAA---A--AAT----------GAGA------GAGGGGAA-T--GTG---ACCTGTT--tactctagacaatctacagcaagaatctaattaaaacagcgtgcgctctagttccggatctaaaggaatctgttttgaattcgattcagtgggagatgttgcgggggttgccacccccatttctaaaataaaaatgagagaggggaatgtgacctgtt
gi|20 : ggggggggttgaagcttgttttgctaccttccgggatacaaatctttgcgtttcgtttctttggggggagagggggtacataattttattatttggatatgtaaacaagctcaagactgagatatctttgacaaatgagacttcaattaagtaacaaagcaaacgctgataagtttaataaccggagcgcttaggctgactatactctagacaatctacagcaagaatctaattaaaacTGGGAC-------A-G-TT-GC-GGGGGTT----G---AAACCCCCGCTCTTTGA------------AG-AA---A--AA
gi|21 : GGAT-T-CA---A-GGGGG-------A-G-TT-T----GGGTT----G--CACCCCCCCCCaaag
gi|3 : ttggcGAAACTTAAA-GCCTGC-ATTAT-TTTGAACAA-TCAGG-ATTT-TCT--CAAG-TCA-----A-AATGC--GAAAGC--------T-AT----------AGCCCCGG-------AGTGGGCCAGACTA
gi|3 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttaAG-AATCT----TG-A----AAAGTGGATAT-CAG--ATGGGGGC------A-G-TTTGCCGGGGGTT----G--CACTCCTCCCCCttaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagaggagaatcttgaaaagtggatatcagatgggggcagtttgccgggggttgcactcctccccc
gi|4 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttagaaacttaaagcctgcattattttgaacaatcaggattttctcaagtcaaaatgcgaaagctatagccccggagtgggccagactattaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagaggGAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---CGCT-GACTAGCTTGCGCTCCG-TCGTATC-CAGATCTAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---T--AAT----------GAGA-GG-G-GGGGGGGG-T--GTA---ACCTGTT--ACT-GTTT--AAAATA--A-----A--A--A-------------T--C--A--A-ATT----T--AT--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGCCAAA-G--GAAAT-A--GGG---C-A-AACTG-----TC-T--GT-ACT-TATTAGGTA-TA-ATTC---TAAAATTT--AACAAAAA---CG----------------ATCTAGTG-AAT-A-CAT-CT-----GAAATAAA
gi|5 : GATACT-AAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATAT-TCTA-CAA--ATA-----AGAAAGC--AGAAACTATTAGTGTAAT----------A---CTGG-------A---GGCG-GACTAt
gi|5 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattaAGATTTAAAG-AATCT----TG-A----AA--TAGAT-T-CA---ATTGGGC-------A-G-TT-GC-GGAGGTT----G--CACCCCCCTTCCTTTtaattctatattttatagttcaattttatgacaatctatagcaagggctttttttttagatttaaagaatcttgaaatagattcaattgggcagttgcggaggttgcaccccccttccttt
gi|6 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattagatactaaagcctgcatattttgacaatggatattctacaaataagaaagcagaaactattagtgtaatactggaggcggactataattctatattttatagttcaattttatgacaatctatagcaagggctttttttttGAT-T-CA---GGGGGGGGGGGGGTA-G-TT-CC-GGGGGTT----G--CATCCCGCCCCCTTTGAA------------AA-AA---A--AAT----------G----GA-G--AGAGAGA-TT-GTA---TCATATT--ACT-GTTT--TAA--A--A-----A--A--AGTGGTGTTTTTTTT--CGTA--G-ATT----T-GAATTAATTAAC-AC-A-TGAG-CCTA---TTTT-CCG-AAGGTCAAA-G--GAAAA-A--AGG-----A-AACTG-----TC-C--GT-CCT-CATTAACTA-TT-GTTC---TAAAATGT--A-----------------------------TATAGTG-AAT-G-CAT-CT-----GAAATGA
gi|7 : --TGGAT-T-CA---GGGGAGG-------A-T-TT-GC-GGGGGTT----G--CACACACCCCC---TTGA------------AA-AATCNN--NNN----------NNNN-NN-N-NNNNNNNN-N--NNN---NNNNNNN--NNN-NNNN--NNNNNN--N-----N--N--N-------------T--C--ACAG-ATT----TGAAA--------T-AT-A-AAAA-CACA---T--------------GAA-G--GAAA-----GGG---C-A-AAATG-----TT-T--GT-CCT-CAA-AAGTA-TG-GTTC---TACAATTT--AAAAAAAACCCCGATATATATATATATATATATAGTG-AAC-CTCAT-CT-----GAAATGAggccgacgagaacgtaacccgagggaggggagtgtaaccccccgccattttaaactaagaatgctaaa
gi|8 : ggGGAT-T-CA---A--GGAT-------A-G-TT-AT-GGGATTTATCTG--CACCCCCCCCCC--TTGA------------AA-AA---ATCAA-----------GAGAAGA-GAGAGAGAGA-TTTGCACACATGTGTT--ACT-GTTTTTATCTTA--G-----A--T--T-------------T--T--A--A-ATT----T-AAATTAA----C-AC-AATGGA-CCTA---TTT--CCA-AAGGTC-AA-G--GAAAT----GGG---C-A-AGATA---------------------TAAGTA-TC-GTTT---CTAAACTT--AGCAAAAA---AA----------------ATTAAGAGAAATGA-CAT-CA-----GAAATGAggtcgacgaggacctaacagggaggggggggggagggttgca
gi|9 : ggcGAGG-------G-G-TT-AT-GGGGGTT----GGCCATACCCGCCTCCTTTGATTTTGAAAAAAAAA-AA---A--AGTTGGAGCACGGGAGA-GA-G-GAGGGGGGGT--GTA---ACCTGTTTCAGT-CTTT--AAATTA--A-----CTCA--C-------------T--C--A--A---T----C-AAG--------C-CCTC-TGAG--------TTTT-CCA-AAGGTCAAATG--GTAATCA--GGG---A-ACAAATT-----TT-A--GTCACTCTACTAGATGTTG-GTTCG--TAAAAgg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CGGATTCAAGGGGGGAGGCCCTGGGGGTAGTGTTGTGAGGCCACTTTGAAAAATCAAGCGAGATTGTAACATTTTACTGTCTTTAAAAATGGCTGTCCT
Unaligned ( gi|17 ): AGGGAGAGGACGGGGTGAGCGTTGTTTTGTCACTTTCCGGATACAATTCACTTGCTATTCGTTTCATTTTTTCCTGTATCTAACTTCTATTTGGGC
Unaligned ( gi|18 ): CTCAACAAAACAATTCATTCGCGGATCCAAAGGGGAGGGGTGGGCGGGTTTCCGGGGTTGAATCCCTCTTCTCCCCCTTTCT
Unaligned ( gi|22 ): TCGCTTTAGTTTTTCTGTACATAATTCTATTTGGCTATG
Alignments
lowQualScore : 1 11 1111111 44444444444444444444444444444444444444444 111 1111 1111 1111111 222222222222 2222222222222222222 11 11 66666666666666666666666666666666666666666666666666666666666666666666666666 111 11111 11111 11111111111 111 555555555555555555555 1 111 11111
lowQualScore : 6 6 6 6 6 6 1 77 5 5 5 66 5555555 77 55555555555555555555555555555555555555555 5 0 2 222 0 6 1 5 0000 5 0000 55 3 3 888 1 4444444 2 2 2 2 6666 33 2 4 222222222222 4 8888888888888888888 999999 4 00 8888 00 5 66666666666666666666666666666666666666666666666666666666666666666666666666 77 333 4 4 0 0 4 66 33333 33333 4 77777777777 88 5 5 5 555 99 88 111111111111111111111 1 3 000 6 66666
lowQualScore : . . . . . . . .. . . . .. ....... .. ......................................... . . . ... . . . . .... . .... .. . . ... . ....... . . . . .... .. . . ............ . ................... ...... . .. .... .. . .......................................................................... .. ... . . . . . .. ..... ..... . ........... .. . . . ... .. .. ..................... . . ... . .....
lowQualScore : 7 7 7 7 7 7 4 99 7 7 7 66 3333333 99 33333333333333333333333333333333333333333 7 2 5 888 8 7 6 0 6666 0 6666 55 1 1 555 4 0000000 7 7 9 9 1111 99 4 8 888888888888 4 1111111111111111111 000000 4 66 2222 66 0 22222222222222222222222222222222222222222222222222222222222222222222222222 11 999 4 4 8 8 4 11 66666 33333 4 88888888888 00 0 0 7 777 22 33 000000000000000000000 0 3 888 7 77777
consensus : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---A--AAT----------GAGA-GA-G-GAGGGGGA-T--GTA---ACCTGTT--ACT-GTTT--AAANTA--A-----A--A--A-------------T--C--A--A-ATT----T-AAA--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGTCAAA-G--GAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNTAGTG-AAT-A-CAT-CT-----GAAATGAA
Reference ( family-2092 ) : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---A--AAT----------GAGA-GA-G-GAGGGGGA-T--GTA---ACCTGTT--ACT-GTTT--AAANTA--A-----A--A--A-------------T--C--A--A-ATT----T-AAA--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGTCAAA-G--GAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNTAGTG-AAT-A-CAT-CT-----GAAATGAA
gi|1 : GAAATT-GAAAGCCTGT-A-TAT-TTTG-ACAA-T--GGGATTT-TCTA-CAAG--TA------CAAAGC--AGAAAC--------AAAT----------A---CCGG-------AG--GGCT-GACTA
gi|1 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtaAACGTGCGCTCCGATCGTATC-CAAATATAAAG-AATCT----TGGA----AA--TGGAT-T-CA---ATGGGGGG------A-A-TT-GC-GGGAGTT----G--CATCCCCCCCCCATTTGA------------AA-AA---A--A-------------AAA-GACG-GAGGGGGA-T--GTA-----CTGCTA-ACTGGTTT-----TTA--A-----A-------------------------G--A-ATT----T-CAA--------CAAC-A-TGAA-CCTATT-TTTT-TCA-AAGGTCATA-A--GGAAT-G--GGG---CAA-AAATGCCGATTC-TTGGT-ACT-TATTAGGTA-TG-GTTC---TAAAAATT--AA-ACAAA---CG----------------ATTTAGTGTTAT-A-CAT-TT-----GAAATGAAtaattgctatacgtttgaattttaatgaacagcttaaacaacgtgcgctccgatcgtatccaaatataaagaatcttggaaatggattcaatggggggaattgcgggagttgcatcccccccccatttgaaaaaaaaaagacggagggggatgtactgctaactggtttttaaagaatttcaacaacatgaacctatttttttcaaaggtcataaggaatggggcaaaaatgccgattcttggtacttattaggtatggttctaaaaattaaacaaacgatttagtgttatacatttgaaatgaagtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|10 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtagaaattgaaagcctgtatattttgacaatgggattttctacaagtacaaagcagaaacaaataccggagggctgactataattgctatacgtttgaattttaatgaacagcttaaacAA-T--GG-ATTTATCTA-AGAG--TA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGGA------A---GGTT-GACTAgtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|10 : tacaggataaaagcttaaattaactaagcatgTATCACAGATATAAAG-AAT-T----TG-A----AA--TGGGT-T-CA---ATGGGAC-------A-GTTT-GC-GGGGGTT----G--AA--ACCCCGCCCTTTGA------------AT-AA---A--AAtgattctataggtctgaatttatgacaatctacagaaaggcttatcacagatataaagaatttgaaatgggttcaatgggacagtttgcgggggttgaaaccccgccctttgaataaaaa
gi|11 : tacaggataaaagcttaaattaactaagcatgaatggatttatctaagagtaacaaagcagaaactaataccggaaggttgactatgattctataggtctgaatttatgacaatctacagaaaggctT-GAA-TTCTGC-A-TAT-TTTG-ACAACT--GG-AGTT-TCTATCAAGTATAGTAGTATATAGTTAAGAATT--------TTAT-----------------------------GACT-AATTATCGTTC---TTG-TCGTATC-CATA-ATAAAG--ATCT----TG-AGAATAA--TGAAT-T-C----ATGGAGG-------A-G-AT-GC------TT----G--CAC
gi|12 : --A--A-ATT----T-AAA--------C-TC-A-TGAA-ACTATTTTTTT-TCA-AAAG------G--AAAAT-A--AGGGGCC-A-AAATG-----TCTT--GT-CCT-TATTAAGTA-TGCGTTTCTGTAACATTTTAAACAAAAC---CG----------------ATAGAGTA-AAT-A-TATACTATCTGGAAATGGAatcc
gi|13 : -T--GTA---ACCTATT--AGT-TTTT--AAACCATTC-----A--A--A-------------TTTC--A--ATATTGTAAT-AAA--------C-ACCA-TAA--CCTA---TTTT-CCA-AAGGTCAAA-AAAGAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATT-AGTA-T
gi|15 : C-CAGATATAAAG-AATCT----TG-A----AA--TGGGT-TCCA---GTGGGAC-------A-G-Tatata
gi|16 : gatgactttaattctatagttgaattttatgtacaatcctacaggaagagctttacc-T--GTA---ACTTGTT--AC--GTTT--AAAGAA--ATTTTCA--ATGA-------------T--T--A--A-ATT----T-AAC--------CCAC---TGAGTCCTA---TTTTGCCAGAAGGTCAAA-G--GGAAA-AGTGGG---G-A-AAA
gi|19 : gagA--TAAAT-C-CAGATATGGGAC-------A-G-TT-GC-GGGGGTT----G--AAACCCCC
gi|2 : tttatgacaatctacagcaagagcttAAGCT-CAA-GACTGAGA-TATCTTTG-ACAAAT--GA-GACT-TCAA-TTAA-GTA-----ACAAAGC--AAACGC--------TGATAAGTTTAATAA---CCGGAGCGCTTA---GGCT-GACTA
gi|2 : ggggggggttgaagcttgttttgctaccttccgggatacaaatctttgcgtttcgtttctttggggggagagggggtacataattttattatttggatatgtaaacAGCGTGCGCTC---TAGT-TC-CGGATCTAAAGGAATCTGTTTTG-A----AT--TCGAT-T-CA---GTGGGAG-------ATG-TT-GC-GGGGGTT----G--C--CACCCCCATTTCTAA------------AATAA---A--AAT----------GAGA------GAGGGGAA-T--GTG---ACCTGTT--tactctagacaatctacagcaagaatctaattaaaacagcgtgcgctctagttccggatctaaaggaatctgttttgaattcgattcagtgggagatgttgcgggggttgccacccccatttctaaaataaaaatgagagaggggaatgtgacctgtt
gi|20 : ggggggggttgaagcttgttttgctaccttccgggatacaaatctttgcgtttcgtttctttggggggagagggggtacataattttattatttggatatgtaaacaagctcaagactgagatatctttgacaaatgagacttcaattaagtaacaaagcaaacgctgataagtttaataaccggagcgcttaggctgactatactctagacaatctacagcaagaatctaattaaaacTGGGAC-------A-G-TT-GC-GGGGGTT----G---AAACCCCCGCTCTTTGA------------AG-AA---A--AA
gi|21 : GGAT-T-CA---A-GGGGG-------A-G-TT-T----GGGTT----G--CACCCCCCCCCaaag
gi|3 : ttggcGAAACTTAAA-GCCTGC-ATTAT-TTTGAACAA-TCAGG-ATTT-TCT--CAAG-TCA-----A-AATGC--GAAAGC--------T-AT----------AGCCCCGG-------AGTGGGCCAGACTA
gi|3 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttaAG-AATCT----TG-A----AAAGTGGATAT-CAG--ATGGGGGC------A-G-TTTGCCGGGGGTT----G--CACTCCTCCCCCttaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagaggagaatcttgaaaagtggatatcagatgggggcagtttgccgggggttgcactcctccccc
gi|4 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttagaaacttaaagcctgcattattttgaacaatcaggattttctcaagtcaaaatgcgaaagctatagccccggagtgggccagactattaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagaggGAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---CGCT-GACTAGCTTGCGCTCCG-TCGTATC-CAGATCTAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---T--AAT----------GAGA-GG-G-GGGGGGGG-T--GTA---ACCTGTT--ACT-GTTT--AAAATA--A-----A--A--A-------------T--C--A--A-ATT----T--AT--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGCCAAA-G--GAAAT-A--GGG---C-A-AACTG-----TC-T--GT-ACT-TATTAGGTA-TA-ATTC---TAAAATTT--AACAAAAA---CG----------------ATCTAGTG-AAT-A-CAT-CT-----GAAATAAA
gi|5 : GATACT-AAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATAT-TCTA-CAA--ATA-----AGAAAGC--AGAAACTATTAGTGTAAT----------A---CTGG-------A---GGCG-GACTAt
gi|5 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattaAGATTTAAAG-AATCT----TG-A----AA--TAGAT-T-CA---ATTGGGC-------A-G-TT-GC-GGAGGTT----G--CACCCCCCTTCCTTTtaattctatattttatagttcaattttatgacaatctatagcaagggctttttttttagatttaaagaatcttgaaatagattcaattgggcagttgcggaggttgcaccccccttccttt
gi|6 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattagatactaaagcctgcatattttgacaatggatattctacaaataagaaagcagaaactattagtgtaatactggaggcggactataattctatattttatagttcaattttatgacaatctatagcaagggctttttttttGAT-T-CA---GGGGGGGGGGGGGTA-G-TT-CC-GGGGGTT----G--CATCCCGCCCCCTTTGAA------------AA-AA---A--AAT----------G----GA-G--AGAGAGA-TT-GTA---TCATATT--ACT-GTTT--TAA--A--A-----A--A--AGTGGTGTTTTTTTT--CGTA--G-ATT----T-GAATTAATTAAC-AC-A-TGAG-CCTA---TTTT-CCG-AAGGTCAAA-G--GAAAA-A--AGG-----A-AACTG-----TC-C--GT-CCT-CATTAACTA-TT-GTTC---TAAAATGT--A-----------------------------TATAGTG-AAT-G-CAT-CT-----GAAATGA
gi|7 : --TGGAT-T-CA---GGGGAGG-------A-T-TT-GC-GGGGGTT----G--CACACACCCCC---TTGA------------AA-AATCNN--NNN----------NNNN-NN-N-NNNNNNNN-N--NNN---NNNNNNN--NNN-NNNN--NNNNNN--N-----N--N--N-------------T--C--ACAG-ATT----TGAAA--------T-AT-A-AAAA-CACA---T--------------GAA-G--GAAA-----GGG---C-A-AAATG-----TT-T--GT-CCT-CAA-AAGTA-TG-GTTC---TACAATTT--AAAAAAAACCCCGATATATATATATATATATATAGTG-AAC-CTCAT-CT-----GAAATGAggccgacgagaacgtaacccgagggaggggagtgtaaccccccgccattttaaactaagaatgctaaa
gi|8 : ggGGAT-T-CA---A--GGAT-------A-G-TT-AT-GGGATTTATCTG--CACCCCCCCCCC--TTGA------------AA-AA---ATCAA-----------GAGAAGA-GAGAGAGAGA-TTTGCACACATGTGTT--ACT-GTTTTTATCTTA--G-----A--T--T-------------T--T--A--A-ATT----T-AAATTAA----C-AC-AATGGA-CCTA---TTT--CCA-AAGGTC-AA-G--GAAAT----GGG---C-A-AGATA---------------------TAAGTA-TC-GTTT---CTAAACTT--AGCAAAAA---AA----------------ATTAAGAGAAATGA-CAT-CA-----GAAATGAggtcgacgaggacctaacagggaggggggggggagggttgca
gi|9 : ggcGAGG-------G-G-TT-AT-GGGGGTT----GGCCATACCCGCCTCCTTTGATTTTGAAAAAAAAA-AA---A--AGTTGGAGCACGGGAGA-GA-G-GAGGGGGGGT--GTA---ACCTGTTTCAGT-CTTT--AAATTA--A-----CTCA--C-------------T--C--A--A---T----C-AAG--------C-CCTC-TGAG--------TTTT-CCA-AAGGTCAAATG--GTAATCA--GGG---A-ACAAATT-----TT-A--GTCACTCTACTAGATGTTG-GTTCG--TAAAAgg
blockSeqs : T . G T C A C CA . A T TA GTAGTAT TA TGATAAGTTTAATAACCGGAGCGCTTA A G TG A A G GTTT . GAAT AG A C GAT T GGGGGGT T T T C ATCT GC C C TTTTGAAAAAAA T AAGTTGGAGCACGG AGAGA G TT CACA TC . TAAAAAAAGTGGTGTTTTTTTTCGTAGATTTGAATTAATTAACACA GT TTT G G T AA AAGT GGCC C TCTT CA C T C CTG TA AC CCCCGATATATATATATATAT A A CT A ATCTG
blockSeqs : . . . . . . A . . . . G AC . TATTAGTGTAATACTGGA . G CG . A . . . . . . . G T C . . . . . . A T . . TCNNNNN GGG . T A . . AAACCATTCAAATTTCAATATTGTAATAAACACCA A . . . . . TCA C . TCT C . . . G . AC CG C . GA . .
blockSeqs : . . . . . . . . . . . T AC . TATAGCCCCGGAGTG . . . . A . . . . . . . . T . . . . . . . A C . . ATCAA GAG . . A . . AAAGAAATTTTCAATGATTAAATTTAACCCAC G . . . . . TA G . TCT A . . . . . AA CG A . A . .
blockSeqs : . . . . . . . . . . . A AC . TAATACCGGAA . . C . . . . . . . . T . . . . . . . C C . . AAAT NNN . . A . . TTATCTTAGATTTTAAATTTAAATTAACACAA G . . . . . TA C . TCC A . . . . . GC AA A . A . .
blockSeqs : . . . . . . . . . . . A AG . TAATACCGGA . . C . . . . . . . . T . . . . . . . C T . . TAAT GAG . . A . . NNNNNNNNNNTCACAGATTTGAAATATA A . . . . . TA C . TTT C . . . . . . . T . G . .
blockSeqs : . . . . . . A . TTAT . T . . . . . . . . T . . . . . . . C T . . AAAT . . . T . . AAATTAACTCACTCAATCAAGCCCTC A . . . . . AA C . TTA C . . . .
blockSeqs : . . . . . . . . T . . . . . . . C C . . . . N . . AAAATAAAAATCAAATTTATCACA G . . . . . T A . . . . .
blockSeqs : . . . . T . . . . . . . T . . . . . A . . . . . . . . . .
blockSeqs : . . . . T . . . . . . . C .
blockSeqs : . . . G . . . . . . . C
blockSeqs : . . . G . . . . . . . T
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . .
blockSeqCons : A* AC***** TAATACCGGAA****************************** ******* AAAT*************** GAG*** A*** ** *** C**** TCT******** AC
originalCons : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATA-----ACAAAGC--AGAAAC--------TAAT----------A---CCGG-------A---GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---A--AAT----------GAGA-GA-G-GAGGGGGA-T--GTA---ACCTGTT--ACT-GTTT--AAANTA--A-----A--A--A-------------T--C--A--A-ATT----T-AAA--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGTCAAA-G--GAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNTAGTG-AAT-A-CAT-CT-----GAAATGAA
finalCons : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAGA-TAAC-----AAAGC--AGAAACTAATACCGGAA------------------------------GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AAAAAT---------------GAGAGAG---GAGGGGGA-T--GTAA---CCTGTT--ACT-GTTT--AAANTA--A-----A--A--A-------------T--C--A--A-ATT----T-AAA--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGTCAAA-G--GAAAT-A--GGGC----A-AAATGTCT--------GT-ACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNTAGTG-AAT-A-CAT-CT-----GAAATGAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CGGATTCAAGGGGGGAGGCCCTGGGGGTAGTGTTGTGAGGCCACTTTGAAAAATCAAGCGAGATTGTAACATTTTACTGTCTTTAAAAATGGCTGTCCT
Unaligned ( gi|17 ): AGGGAGAGGACGGGGTGAGCGTTGTTTTGTCACTTTCCGGATACAATTCACTTGCTATTCGTTTCATTTTTTCCTGTATCTAACTTCTATTTGGGC
Unaligned ( gi|18 ): CTCAACAAAACAATTCATTCGCGGATCCAAAGGGGAGGGGTGGGCGGGTTTCCGGGGTTGAATCCCTCTTCTCCCCCTTTCT
Unaligned ( gi|22 ): TCGCTTTAGTTTTTCTGTACATAATTCTATTTGGCTATG
Alignments
lowQualScore : 1 11 44444444444444444444444444444444444444444444 111 1111 1111 1111111 222222222222 2222222222222222222 11 11 66666666666666666666666666666666666666666666666666666666666666666666666666 111 11111 11111 11111111111 111 11111 555555555555555555555 1 111 11111
lowQualScore : 6 6 6 6 6 6 1 77 5 5 5 66 33 5 44444444444444444444444444444444444444444444 5 0 2 222 0 6 1 5 0000 5 0000 55 3 3 888 1 4444444 2 2 2 2 6666 33 2 4 222222222222 4 8888888888888888888 999999 4 00 8888 00 5 66666666666666666666666666666666666666666666666666666666666666666666666666 77 333 4 4 0 0 4 66 33333 33333 4 77777777777 88 5 5 5 555 22222 111111111111111111111 1 3 000 6 66666
lowQualScore : . . . . . . . .. . . . .. .. . ............................................ . . . ... . . . . .... . .... .. . . ... . ....... . . . . .... .. . . ............ . ................... ...... . .. .... .. . .......................................................................... .. ... . . . . . .. ..... ..... . ........... .. . . . ... ..... ..................... . . ... . .....
lowQualScore : 7 7 7 7 7 7 4 99 7 7 7 66 11 7 44444444444444444444444444444444444444444444 7 2 5 888 8 7 6 0 6666 0 6666 55 1 1 555 4 0000000 7 7 9 9 1111 99 4 8 888888888888 4 1111111111111111111 000000 4 66 2222 66 0 22222222222222222222222222222222222222222222222222222222222222222222222222 11 999 4 4 8 8 4 11 66666 33333 4 88888888888 00 0 0 7 777 55555 000000000000000000000 0 3 888 7 77777
consensus : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATAACAAAGCAGA-AGC--------TAAT----------A---CCGGA------A------GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---A--AAT----------GAGA-GA-G-GAGGGGGA-T--GTA---ACCTGTT--ACT-GTTT--AAANTA--A-----A--A--A-------------T--C--A--A-ATT----T-AAA--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGTCAAA-G--GAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNTAGTG-AAT-A-CAT-CT-----GAAATGAA
Reference ( family-2092 ) : GAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATAACAAAGCAGA-AAC--------TAAT----------A---CCGGA------A------GGCT-GACTAGCGTGCGCTCCG-TCGTATC-CAGATATAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---A--AAT----------GAGA-GA-G-GAGGGGGA-T--GTA---ACCTGTT--ACT-GTTT--AAANTA--A-----A--A--A-------------T--C--A--A-ATT----T-AAA--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGTCAAA-G--GAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATTAAGTA-TG-GTTC---TAAAATTT--AACAAAAA---CG----------------ATNTAGTG-AAT-A-CAT-CT-----GAAATGAA
gi|1 : GAAATT-GAAAGCCTGT-A-TAT-TTTG-ACAA-T--GGGATTT-TCTA-CAAG--TA-CAAAGCAGA-AAC--------AAAT----------A---CCGGA------G------GGCT-GACTA
gi|1 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtaAACGTGCGCTCCGATCGTATC-CAAATATAAAG-AATCT----TGGA----AA--TGGAT-T-CA---ATGGGGGG------A-A-TT-GC-GGGAGTT----G--CATCCCCCCCCCATTTGA------------AA-AA---A--A-------------AAA-GACG-GAGGGGGA-T--GTA-----CTGCTA-ACTGGTTT-----TTA--A-----A-------------------------G--A-ATT----T-CAA--------CAAC-A-TGAA-CCTATT-TTTT-TCA-AAGGTCATA-A--GGAAT-G--GGG---CAA-AAATGCCGATTC-TTGGT-ACT-TATTAGGTA-TG-GTTC---TAAAAATT--AA-ACAAA---CG----------------ATTTAGTGTTAT-A-CAT-TT-----GAAATGAAtaattgctatacgtttgaattttaatgaacagcttaaacaacgtgcgctccgatcgtatccaaatataaagaatcttggaaatggattcaatggggggaattgcgggagttgcatcccccccccatttgaaaaaaaaaagacggagggggatgtactgctaactggtttttaaagaatttcaacaacatgaacctatttttttcaaaggtcataaggaatggggcaaaaatgccgattcttggtacttattaggtatggttctaaaaattaaacaaacgatttagtgttatacatttgaaatgaagtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|10 : gggagcgtttgtttgctctttctggatacaaattttgcctttcgtttcaattttctattgtaaggctatgataacttaagtagaaattgaaagcctgtatattttgacaatgggattttctacaagtacaaagcagaaacaaataccggagggctgactataattgctatacgtttgaattttaatgaacagcttaaacAA-T--GG-ATTTATCTA-AGAG--TAACAAAGCAGA-AAC--------TAAT----------A---CCGGA------A------GGTT-GACTAgtttggcaacaaggctgtaacgaggcaggggggagtgttgccactatggaaaacccccccccccattaaataaaaaatgcttaaaa
gi|10 : tacaggataaaagcttaaattaactaagcatgTATCACAGATATAAAG-AAT-T----TG-A----AA--TGGGT-T-CA---ATGGGAC-------A-GTTT-GC-GGGGGTT----G--AA--ACCCCGCCCTTTGA------------AT-AA---A--AAtgattctataggtctgaatttatgacaatctacagaaaggcttatcacagatataaagaatttgaaatgggttcaatgggacagtttgcgggggttgaaaccccgccctttgaataaaaa
gi|11 : tacaggataaaagcttaaattaactaagcatgaatggatttatctaagagtaacaaagcagaaactaataccggaaggttgactatgattctataggtctgaatttatgacaatctacagaaaggctT-GAA-TTCTGC-A-TAT-TTTG-ACAACT--GG-AGTT-TCTATCAAGTATAGTA--GTATATAGT--------TAA------------------GA------ATTTTATGACT-AATTATCGTTC---TTG-TCGTATC-CATA-ATAAAG--ATCT----TG-AGAATAA--TGAAT-T-C----ATGGAGG-------A-G-AT-GC------TT----G--CAC
gi|12 : --A--A-ATT----T-AAA--------C-TC-A-TGAA-ACTATTTTTTT-TCA-AAAG------G--AAAAT-A--AGGGGCC-A-AAATG-----TCTT--GT-CCT-TATTAAGTA-TGCGTTTCTGTAACATTTTAAACAAAAC---CG----------------ATAGAGTA-AAT-A-TATACTATCTGGAAATGGAatcc
gi|13 : -T--GTA---ACCTATT--AGT-TTTT--AAACCATTC-----A--A--A-------------TTTC--A--ATATTGTAAT-AAA--------C-ACCA-TAA--CCTA---TTTT-CCA-AAGGTCAAA-AAAGAAAT-A--GGG---C-A-AAATG-----TC-T--GT-ACT-TATT-AGTA-T
gi|15 : C-CAGATATAAAG-AATCT----TG-A----AA--TGGGT-TCCA---GTGGGAC-------A-G-Tatata
gi|16 : gatgactttaattctatagttgaattttatgtacaatcctacaggaagagctttacc-T--GTA---ACTTGTT--AC--GTTT--AAAGAA--ATTTTCA--ATGA-------------T--T--A--A-ATT----T-AAC--------CCAC---TGAGTCCTA---TTTTGCCAGAAGGTCAAA-G--GGAAA-AGTGGG---G-A-AAA
gi|19 : gagA--TAAAT-C-CAGATATGGGAC-------A-G-TT-GC-GGGGGTT----G--AAACCCCC
gi|2 : tttatgacaatctacagcaagagcttAAGCT-CAA-GACTGAGA-TATCTTTG-ACAAAT--GA-GACT-TCAA-TTAA-GTAACAAAGCAAA-CGC--------TGATAAGTTTAATAA---CCGGAGCGCTTA------GGCT-GACTA
gi|2 : ggggggggttgaagcttgttttgctaccttccgggatacaaatctttgcgtttcgtttctttggggggagagggggtacataattttattatttggatatgtaaacAGCGTGCGCTC---TAGT-TC-CGGATCTAAAGGAATCTGTTTTG-A----AT--TCGAT-T-CA---GTGGGAG-------ATG-TT-GC-GGGGGTT----G--C--CACCCCCATTTCTAA------------AATAA---A--AAT----------GAGA------GAGGGGAA-T--GTG---ACCTGTT--tactctagacaatctacagcaagaatctaattaaaacagcgtgcgctctagttccggatctaaaggaatctgttttgaattcgattcagtgggagatgttgcgggggttgccacccccatttctaaaataaaaatgagagaggggaatgtgacctgtt
gi|20 : ggggggggttgaagcttgttttgctaccttccgggatacaaatctttgcgtttcgtttctttggggggagagggggtacataattttattatttggatatgtaaacaagctcaagactgagatatctttgacaaatgagacttcaattaagtaacaaagcaaacgctgataagtttaataaccggagcgcttaggctgactatactctagacaatctacagcaagaatctaattaaaacTGGGAC-------A-G-TT-GC-GGGGGTT----G---AAACCCCCGCTCTTTGA------------AG-AA---A--AA
gi|21 : GGAT-T-CA---A-GGGGG-------A-G-TT-T----GGGTT----G--CACCCCCCCCCaaag
gi|3 : ttggcGAAACTTAAA-GCCTGC-ATTAT-TTTGAACAA-TCAGG-ATTT-TCT--CAAG-TCAA-AATGCGAA-AGC--------T-AT----------AGCCCCGGAGT----G------GGCCAGACTA
gi|3 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttaAG-AATCT----TG-A----AAAGTGGATAT-CAG--ATGGGGGC------A-G-TTTGCCGGGGGTT----G--CACTCCTCCCCCttaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagaggagaatcttgaaaagtggatatcagatgggggcagtttgccgggggttgcactcctccccc
gi|4 : ctgagcttgtggttttcttttttccggataacaatttttttttcgtttcaacatttttttcttctttacaggtaggaattctacatttgattatgacaactaagtttagaaacttaaagcctgcattattttgaacaatcaggattttctcaagtcaaaatgcgaaagctatagccccggagtgggccagactattaatgatctatagtagctcaaatttaaaatttaatgacaataaatctacctaactaacaggcaaagagcatattccatgattttaagaggGAAACT-GAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATTT-TCTA-CAAG-ATAACAAAGCAGA-AAC--------TAAT----------A---CCGGA------C------G-CT-GACTAGCTTGCGCTCCG-TCGTATC-CAGATCTAAAG-AATCT----TG-A----AA--TGGAT-T-CA---ATGGGGG-------A-G-TT-GC-GGGGGTT----G--CACCCCCCCCCCCTTTGA------------AA-AA---T--AAT----------GAGA-GG-G-GGGGGGGG-T--GTA---ACCTGTT--ACT-GTTT--AAAATA--A-----A--A--A-------------T--C--A--A-ATT----T--AT--------C-AC-A-TGAG-CCTA---TTTT-CCA-AAGGCCAAA-G--GAAAT-A--GGG---C-A-AACTG-----TC-T--GT-ACT-TATTAGGTA-TA-ATTC---TAAAATTT--AACAAAAA---CG----------------ATCTAGTG-AAT-A-CAT-CT-----GAAATAAA
gi|5 : GATACT-AAA-GCCTGC-A-TAT-TTTG-ACAA-T--GG-ATAT-TCTA-CAA--ATAAGAAAGCAGA-AACTATTAGTGTAAT----------A---CTGG-------A------GGCG-GACTAt
gi|5 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattaAGATTTAAAG-AATCT----TG-A----AA--TAGAT-T-CA---ATTGGGC-------A-G-TT-GC-GGAGGTT----G--CACCCCCCTTCCTTTtaattctatattttatagttcaattttatgacaatctatagcaagggctttttttttagatttaaagaatcttgaaatagattcaattgggcagttgcggaggttgcaccccccttccttt
gi|6 : agcttgtgttttctttccggatacaatttgctttcgtttcgctttttttctgtacatagttctatttggctatgatacatgtaactaagtttattagatactaaagcctgcatattttgacaatggatattctacaaataagaaagcagaaactattagtgtaatactggaggcggactataattctatattttatagttcaattttatgacaatctatagcaagggctttttttttGAT-T-CA---GGGGGGGGGGGGGTA-G-TT-CC-GGGGGTT----G--CATCCCGCCCCCTTTGAA------------AA-AA---A--AAT----------G----GA-G--AGAGAGA-TT-GTA---TCATATT--ACT-GTTT--TAA--A--A-----A--A--AGTGGTGTTTTTTTT--CGTA--G-ATT----T-GAATTAATTAAC-AC-A-TGAG-CCTA---TTTT-CCG-AAGGTCAAA-G--GAAAA-A--AGG-----A-AACTG-----TC-C--GT-CCT-CATTAACTA-TT-GTTC---TAAAATGT-------------------------------ATATAGTG-AAT-G-CAT-CT-----GAAATGA
gi|7 : --TGGAT-T-CA---GGGGAGG-------A-T-TT-GC-GGGGGTT----G--CACACACCCCC---TTGA------------AA-AATCNN--NNN----------NNNN-NN-N-NNNNNNNN-N--NNN---NNNNNNN--NNN-NNNN--NNNNNN--N-----N--N--N-------------T--C--ACAG-ATT----TGAAA--------T-AT-A-AAAA-CACA---T--------------GAA-G--GAAA-----GGG---C-A-AAATG-----TT-T--GT-CCT-CAA-AAGTA-TG-GTTC---TACAATTT--AAAAAAAACCCCGATATATATATATATATATATAGTG-AAC-CTCAT-CT-----GAAATGAggccgacgagaacgtaacccgagggaggggagtgtaaccccccgccattttaaactaagaatgctaaa
gi|8 : ggGGAT-T-CA---A--GGAT-------A-G-TT-AT-GGGATTTATCTG--CACCCCCCCCCC--TTGA------------AA-AA---ATCAA-----------GAGAAGA-GAGAGAGAGA-TTTGCACACATGTGTT--ACT-GTTTTTATCTTA--G-----A--T--T-------------T--T--A--A-ATT----T-AAATTAA----C-AC-AATGGA-CCTA---TTT--CCA-AAGGTC-AA-G--GAAAT----GGG---C-A-AGATA---------------------TAAGTA-TC-GTTT---CTAAACTT--AGCAAAAA---AA----------------ATTAAGAGAAATGA-CAT-CA-----GAAATGAggtcgacgaggacctaacagggaggggggggggagggttgca
gi|9 : ggcGAGG-------G-G-TT-AT-GGGGGTT----GGCCATACCCGCCTCCTTTGATTTTGAAAAAAAAA-AA---A--AGTTGGAGCACGGGAGA-GA-G-GAGGGGGGGT--GTA---ACCTGTTTCAGT-CTTT--AAATTA--A-----CTCA--C-------------T--C--A--A---T----C-AAG--------C-CCTC-TGAG--------TTTT-CCA-AAGGTCAAATG--GTAATCA--GGG---A-ACAAATT-----TT-A--GTCACTCTACTAGATGTTG-GTTCG--TAAAAgg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CGGATTCAAGGGGGGAGGCCCTGGGGGTAGTGTTGTGAGGCCACTTTGAAAAATCAAGCGAGATTGTAACATTTTACTGTCTTTAAAAATGGCTGTCCT
Unaligned ( gi|17 ): AGGGAGAGGACGGGGTGAGCGTTGTTTTGTCACTTTCCGGATACAATTCACTTGCTATTCGTTTCATTTTTTCCTGTATCTAACTTCTATTTGGGC
Unaligned ( gi|18 ): CTCAACAAAACAATTCATTCGCGGATCCAAAGGGGAGGGGTGGGCGGGTTTCCGGGGTTGAATCCCTCTTCTCCCCCTTTCT
Unaligned ( gi|22 ): TCGCTTTAGTTTTTCTGTACATAATTCTATTTGGCTATG