lowQualScore : 1111111111111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 222222222222222222222222222222222222222222222222
lowQualScore : 2 6666666666666666666666666666666666666666666666 1 44444444444444444444444 777777777777777777777777 1 22 11 222222222222222222222222222222222222222222222222222222222 55555 222 4 2 333 2 1 888888888888888888888888888 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33 777777777 2222222 55555555555555555 11 22 222222222222222222222222222222222222222222222222 2 1111 11 111 6666666666666666666666 11 22222222222 111 33333333 33333 33333333333 222 555 1
lowQualScore : 0 66 3333333333333333333333333333333333333333333333 3 7 99999999999999999999999 444444444444444444444444 6 5 3 77 3 3 88 555555555555555555555555555555555555555555555555555555555 2 3 00000 6 777 0 0 555 0 3 0 4 2 2 777777777777777777777777777 3 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6 22 6 999999999 6 4444444 88888888888888888 88 77 3 333333333333333333333333333333333333333333333333 0 3 66 3333 33 4 777 4444444444444444444444 5 11 777 88888888888 66 555 55 8 3 00000000 8 77777 00000000000 8 6 666 6 888 3
lowQualScore : . .. .............................................. . . ....................... ........................ . . . .. . . .. ......................................................... . . ..... . ... . . ... . . . . . . ........................... . ......................................................................................................................................................................................................................................................... . .. . ......... . ....... ................. .. .. . ................................................ . . .. .... .. . ... ...................... . .. ... ........... .. ... .. . . ........ . ..... ........... . . ... . ... .
lowQualScore : 0 00 5555555555555555555555555555555555555555555555 3 7 77777777777777777777777 888888888888888888888888 0 5 0 55 0 0 55 000000000000000000000000000000000000000000000000000000000 5 0 00000 0 000 0 0 000 0 0 5 0 5 5 555555555555555555555555555 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 00 0 000000000 0 5555555 55555555555555555 00 55 0 555555555555555555555555555555555555555555555555 0 2 88 5555 88 2 555 8888888888888888888888 6 66 444 00000000000 99 777 99 7 2 88888888 0 00000 88888888888 0 7 000 7 333 5
consensus : NNCCTTCTCGCCCTGTCTCCGNAGTGCTACCTGGTTTGAAANCCATGGACANGACTAAAGANTAGTACCGCNTNACCTT-GCATGACGCAT-GCACCAGNCTGTAGCATCCC--TNCTT--AGTG-AGGA-G-TGGACGTGGCCCCA---GNCCCCGNGACG-CTGTGGACCCCACTTGCAGNAGCGACANCTNTAACTACTTGATAANTTNGGCTTGTTTAGACT-CACAATANNCAACTGTAAAT------TGCCACCTNCCTCAGNGGCAGGTGGGGGGGGGGGGGACNCNCAGGTTTTGGAGCAGAGAAACCTGTCATTNACNTNCCGCGACNGACTCCCCAGTTCCCNGTGCCTNCCCCCTTTTAAANTAANATGCGGCAGGGTGGGTAATAATGAAATGAACTG-AT----TGAAGTGTTGATAG-CTGTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAAC--CTAGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACANCTGGAATAGAAAGTGAAACTGACGACAGCAGTAACTGTTGCACANAGAAAAAACAAACACNACGACTCAAAACANGAAGAATGACAATAAGGTTGGGATGGGTGGGTAACGAATT-TTGGT--CAGGTAAAAA---AGCC---GC-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CCC--GTACCAAT-ANTACTCG-TGCTGGAAAGCGGGGGTTGAAG--CTGAAATCG-AATAGGACAACACAAAAAACGCCT--A-TCCAAAA-TTAATTCG-GACTAATTTGA-TATAAAATCAAATAATCCTGA
Reference ( gi|1 ) : TGCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAAGCATGGACATG-CAAAAGGTTAGTG-CGCCTAACCTTAGCCTGACGCAT-GCACCAGACTGTAGCATCCCG-CCCTT--AGTT-AGGACG-TGGATGTGA-CCCA---GATCTTGT--TGTCTGTGGACCCCGCTTGCAAAA--AACAACTTTAACTACT------ATTAGGCTT--TTAGCCTACACAATACACAACAGTAGATGATACACGCCCCCTGCCTTAATGGCAGGT-----GGGAGGAGACA-ACAGGTTTTGG-GCAG-AAAA---GTCA-TAACCTTCCGCGACGGACTCCCCAG-CCCCAA-----CCCCCC------AG-AAAATGCGACAGGG-AGATAACACAAAAAT--ACTATATAATATGAAATGCTGGTTGTTTGTTG---TAACC-TGA-------ACTAGCCAAGCTGAAACCTCTGGACATACCTCTATTCGAGGTTGCCTCTAA-------CTGTAAA-CCTAAAACATAAGCCCCAGGTTCA---TTTTACACAAATGCGAGATAAACAACGTCCCATTA-TCAC-TTG-------GTCCA-ATGGTCCT-----------ATTTCGTCT-GAGGCTGCCTTAAGTGCTC--TGCAGGCGGCCTGCATAAATGCATCTGAA-ACCTGGAATTGAAAG-AAAA-----GACAGCAGTAACTGTT--ACAAAG-------------TACAAT-----ACAGAAAG-----------GGT--GG-TGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---AT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATCGAATAG----------CCC--GTACCAAT-ACTACTCG-TGCTGGAAAACGGGGGTTGAAG--CGGAAATCG-AATAGGACAACACAAAAAACG-TT--A-TCC-AAA-TTAATTCG-GACTAATTTGA-TAT---ATCAACTAATCCTGA
gi|2 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAACCATGGACAGGACTAAAGAGTAGTACCGTCTTACTTT-GCATGAAGCTT-GCACCAGCATGTAGCATCCCGACACTT--TGTT-TGGAAG-TGGATGTGGCCCCA---GTTTTTGTGACG-CTGTGGACCCCACTTGCAAAAGCAACACTTTTAACTACT------TTTTGGCTT--T-------CACAATACACAA--------------------CTTCCTCAATGGCAAGT-----GGGGGGAGACT-ACAGGTTTTGGAGCAGAAAAA---GTCA-TAACTTTCCGCGACGGACTCCTTAG-TTCCTG-----ACCCCC------AGTAAAATGCGGCAGGGTGGGTAATAATGAAATGAACTG-AT----TGAAGTGTTGATAG-CTGTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAAC--CTAGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACAACTGGAATAGAAAATGAAA-----GACAGCAGTAACTGTTGCACAAAA-------------TAAGAC------CATGAAG-----------AATTGGG-TGGGTGGGTAA--AATTGTTGGC--CAAGTAAACA---TGTT---TT-A---GC-AAATAACTTCCGGTGT-------GCAGAAAATGAATAGTTCGTAATATTTC--GTACCAAT-ATTTCTCG-CGCTAGAAAATGG
gi|3 : tttcCCTTCTCACCCTGTCTCTGCAGTGCTACCTGGTTTGAAATTTA---ACAT---------TT--TA-TACATAATC---------CACATTGCACCAGACTGTAGCATCCCC-TCACTGAAGTG-AGG----TGGACGAGGTCCCAACCGGCCCCGG--TG---GTGGACCTCACT-ATAGCA--GATAACTGT--TTACTTGATAAATTAA-CTTGTTTAGACT------TAGTC--CTGTAAAT------TGCCACCTGCTTTAGGAGCAGGTGGGGGGGGGGGGGACACCCAGGTTTTGGAGCAG-GAAACCTGTCATTCACATACCATTACCGACTCCCCAGTTCCCAGTGCCTCCCCCCTTTTAAAT-AACATGCGACAG
gi|6 : gcCAT-GCACCAGTCTGTATAATC----TTCTC--AATGAAGGACGATGGATGTGC-CCTA---G
gi|4 : atacacaagtcaatatA-ATCTGGAA----AAG-AAAACTGACAACAGCAGTAA--GTT--ACACAGAAAAAACAAACACGACAATTCAAAACAGAAAGAATGACAATAAGGT--GGATGGGTGGG---CAAA-T-TTAGTCCCAAGTGTAAA---AGCC---GTGT---G--A--------CTTGCTTCTGTT-GTTGGAAATTAAACAA----------GTC--GTACCGAT-ATAACTCccccgctattacggatttatttgattttaacttgtgcagacttttagtcctgttaattccccctgcactagaagtagg
gi|14 : TAACGAATT-TTGGT--CAGGTAAAGA---AACC---AC-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATAGAATAG----------CCC--GTACCAAT-Atggctaaataaaatgtgtcaaaattgagaatccgtaccgatgactctcgggctgactgtaagtagttagatgaagtaaacaccctccaaaattaatttggactatttgatataaaatcaaataatcctaa
gi|9 : aTAACAA--T-TTGGT--CAGGTAAAAACCAAGCCCCAAC-TCGGGCTA--------CTGGTTTAGGCG-AGCAGAATTTCGATAG-----------CC--GTACCAATAAATACTCG--GCTGGAAAGCGGGGG-TGAAG--CTGAa
gi|5 : a--------CTGGATTAGGCCGAGCAGAATACGAATAG----------CCCACGTACCAATCAATACTCGGTGCTG-AAAGCGGGTGGTGAAG--CTGAA-TCGGAATAGGACAACA-AAAAAACGCTT--A-CCA-AAA-TTAATTCG-GACTA--TTGA-TATAAAATCAAATAATCCTGA
gi|8 : ----------CTC--GTACCAAT-A-TACTCG-TGCTGGAAAGCGGGGATTGAAG--TTG-AATCG-AATAGGACAG-AC-AAAAACG-CT--AGTCCAAAA-TTTATTCG-GACT-ATTTGA-TATAAAATTAAATGATCCTGAt
gi|10 : ----------CTC--GTACCAAT-AATACTAG-TGCTTGGAAGCGGGGATTGAAG--TTG-AATCG-AATAGGACAAC------AACG-CTCAG-TCCAAAA-TTAATTCG-GACTAA-TTGATTAA---ATTAATGGATCCTGAtt
gi|16 : --GTACCAAT-ATTACTCG-TGCTGGAAAGCGGGGATTGAAGTTC---AATCG-AACA
gi|12 : CTCG-TGCTGGAAG-CGGGGGTTGAAG--CTGAA-TCG-AATAGGACA--ACAAAAAACGCTT--A-TCCAAAA-TTAATTCGCGACT-ATTTGA-TATAAAATCAAATAATCCTGA
gi|4 : AAACA-CC--C-TCC-AAAATTAATTTG-GACT-ATTTGA-TATAAAATCAAATAATCCTAA
gi|13 : aatctggaaaagaaaactgacaacagcagtaagttacacagaaaaaacaaacacgacaattcaaaacagaaagaatgacaataaggtggatgggtgggcaaatttagtcccaagtgtaaaagccgtgtgacttgcttctgttgttggaaattaaacaagtcgtaccgatataactctggctaaataaaatgtgtcaaaattgagaatccgtaccgatgactctcgggctgactgtaagtagttagatgaagtTGACTTG-GACTA-TTTGA-TATAAAATCAAATAACCCTG
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CGGTGTTGGGGAAATTGATTAGATCGTACCGATAATTCTCGCACTAAATTCATATTTGTAGAAATTGATAACTCGTACAAATGAGTCTCGCACTACAAAGTAAGCGATATAAGCCCTATACCCAAAACTACTGTG
Unaligned ( gi|11 ): ATCCATATGAACCTGCCTGTAGCATTCCCTATCTGAAGTGATGTGGGCGAGGTCCCAACCGGCCCTGGTGTGACCTCACTATCATTATAGCAGATAACTGTTTACTT
Unaligned ( gi|15 ): ACAGTAAAGTAGATTAAATAAAATAAACACCTCCAAAAATGAATTGGACTATTTATATAAAATCAAATAATCCG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 22222222222 2222 22 111 444444444444444444444 222 5555555 11 333333333 11 66666666666666666666666666666666666666666666666666666666 5555555555 3333 22 77777777777777777777777 1 11 4444444 2 222 3333333333 22 4444 3333333 1 2 222 2 1 1 3333333 1 44444444444 1 11 2 33333333 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 111 444444444444444444444 11111111111 1 2222 11111 111
lowQualScore : 3 77 44 7 99999999999 6 6666 1 00 222 1 1 8 666666666666666666666 1 3 888 1 2 4444444 2 00 333333333 1 1 88 77777777777777777777777777777777777777777777777777777777 1 0 11 0 6666666666 7 88 6666 44 1 1 1 7 22222222222222222222222 1 0 5 77 88 4444444 4 0 4 000 5555555555 88 2 77 3 2 2222 2222222 2 5 66 4 0 111 4 0 4 4 77 5 5 3333333 5 3 33333333333 4 5 66 88 4 0 44444444 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 1 66 8 11 1 444 999999999999999999999 3 88 77777777777 44 0 4 2 55 777 0 6 7 5 7777 1 44444 5 888 3
lowQualScore : . .. .. . ........... . .... . .. ... . . . ..................... . . ... . . ....... . .. ......... . . .. ........................................................ . . .. . .......... . .. .... .. . . . . ....................... . . . .. .. ....... . . . ... .......... .. . .. . . .... ....... . . .. . . ... . . . . .. . . ....... . . ........... . . .. .. . . ........ . ................................................................................................ . . .. . .. . ... ..................... . .. ........... .. . . . .. ... . . . . .... . ..... . ... .
lowQualScore : 7 77 77 3 77777777777 7 3333 0 77 333 0 0 0 444444444444444444444 4 2 000 0 0 0000000 5 00 222222222 0 0 55 33333333333333333333333333333333333333333333333333333333 0 7 77 7 3333333333 3 00 0000 77 0 0 0 3 33333333333333333333333 0 7 5 00 00 5555555 0 0 0 555 0000000000 00 5 55 0 5 5555 0000000 5 5 55 0 0 000 0 0 0 0 00 5 5 0000000 0 0 00000000000 0 0 55 55 0 0 55555555 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 8 4 44 0 00 8 000 666666666666666666666 2 22 99999999999 66 0 5 5 44 000 1 2 1 7 7777 6 77777 0 999 2
consensus : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAGGTTAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCA-TCCCG-CNC-TTGAAGTG-AGGAC-GTGGACGTGGCCCCAACCGNCCCTGT--CG-CTGTGGACCCCACTTGCA--ANAGC-GACAACTNTAACTACTT-----ATTAGGCTT--TTAG-CT-CACAATACACAACTGTAGAT------CGCC-CCTGCCTTAATGGCAGGTGGGGGGAG-----ACA-ACAGGTTTTGGAGCAGAAAAA---GTCAT-AACNTTCCGCGACGGACTCCCCAGTTCCCAGTG---CCCCCC------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCCAACATCTGGAANAGAAA-----ACTGG-GACAGCAGTAACTGTT--ACA-AGAAAAAACAA-CA--A-GACT----CAAAGCACGAAGAAT-ACAG-AAGGTTGGG-TGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GCT---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CCC--GTACCAAT-ANTACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACAACA-AAAAAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
Reference ( family-2067 ) : NNCCTTCTCGCCCTGTCTCCGNAGTGCTACCTGGTTTGAAANCCATGGACANGACTAAAGANTAGTACCGCNTNACCTT-GCATGACGCATGCACCAGNCTGTAGCA-TCCC--TNC-TT--AGTG-AGGA--GTGGACGTGGCCCCA---GNCCCCGNGACG-CTGTGGACCCCACTTGCA--GNAGC-GACANCTNTAACTACTTGATAANTTNGGCTTGTTTAGACT-CACAATANNCAACTGTAAAT------TGCCACCTNCCTCAGNGGCAGGTGGGGGGGGGGGGGACNCNCAGGTTTTGGAGCAGAGAAACCTGTCATTNACNTNCCGCGACNGACTCCCCAGTTCCCNGTGCCTNCCCCCTTTTAAANTAANATGCGGCAGGGTGGGTAATAATGAAATGAACTG----AT-TGAAGTGTTGATAGCT-GTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAACCT--AGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACANCTGGAATAGAAAGTGAAACTGACGACAGCAGTAACTGTTGCACANAGAAAAAACAAACACNACGACT----CAAAACANGAAGAATGACAATAAGGTTGGGATGGGTGGGTAACGAATT-TTGGT--CAGGTAAAAA---AGCC---GCT---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CCC--GTACCAAT-ANTACTCG-TGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACAACACAAAAAACGCCTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
gi|1 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAAGCATGGACATG-CAAAAGGTTAGTGC-GCCTAACCTTAGCCTGACGCATGCACCAGACTGTAGCA-TCCCG-CCC-TT--AGTT-AGGAC-GTGGATGTGACCC-A---GATCTTGT--TGTCTGTGGACCCCGCTTGCA--AAAA---ACAACTTTAACTACT------ATTAGGCTT--TTAGCCTACACAATACACAACAGTAGATGATACACGCCCCCTGCCTTAATGGCAGGTGGGAGGAG-----ACA-ACAGGTTTTGG-GCAGAAAA----GTCAT-AACCTTCCGCGACGGACTCCCCAGC-CCCAA-----CCCCCC------AG-AAAATGCGACAGGG-AGATAACACAAAAAT--ACTATATAATATGAAATGCTGGTTGTTTGTTG---TAACCT-GA-------ACTAGCCAAGCTGAAACCTCTGGACATACCTCTATTCGAGGTTGCCTCTAA-------CTGTAAA-CCTAAAACATAAGCCCCAGGTTCA---TTTTACACAAATGCGAGATAAACAACGTCCCATTAT-CAC-TTG-------GTCCA-ATGGTCCTA-----------TTTCGTCT-GAGGCTGCCTTAAGTGCTCT--GCAGGCGGCCTGCATAAATG--------CATCTGAAAC-----------CTGG----------AATTG------AAAGAAAAGACAG-CAGTA--ACTGTTACAAAGTAC----AAT-ACAGAAAGGGTGG--TGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---ATT---GC-A--------CTGGTTTAGGCT-AGCAGAAATCGAATAG----------CCC--GTACCAAT-ACTACTCG-TGCTG---GAAAACGGGGGTTGAAGCGGAAATCG-AATAGGACAACACAAAAAACG-TTA-TCC-AAATTAATTCG-GACTAATTTGATAT---ATCAACTAATCCTGA
gi|10 : tg----------CTC--GTACCAAT-AATACTAG-TGCTT---GGAAGCGGGGATTGAAGTTG-AATCG-AATAGGACAAC------AACGCTCAGTCCAAAATTAATTCG-GACTAA-TTGAT-T-AAATTAATGGATCCTGA
gi|11 : ATGAACCTGCCTGTAGCATTCCC--TAT-CTGAAGTG-AT----GTGGGCGAGGTCCCAACCGGCCCTGG------TGT-GACCTCACTATCATTATAGCAGATAACTGT--TTACTT
gi|12 : atccatCTCG-TGCTG---GAA-GCGGGGGTTGAAGCTGAA-TCG-AATAGGACAACA--AAAAACGCTTA-TCCAAAATTAATTCGCGACT-ATTTGATATAAAATCAAATAATCCTGA
gi|13 : TGACTTG-GACTA-TTTGATATAAAATCAAATAACCCTG
gi|14 : ataactctggctaaaattgagaattcgtaccgatgatactcgggcTAACGAATT-TTGGT--CAGGTAAAGA---AACC---ACT---GC-A--------CTGGTTTAGGCT-AGCAGAAATAGAATAG----------CCC--GTACCAAT-Atttatctacaaaa
gi|15 : aAATAAAATAAACACCT---CCAAAAATGAATTG-GACTA-TTT-ATATAAAATCAAATAATCCa
gi|16 : acagtaaagtagatta--GTACCAAT-ATTACTCG-TGCTG---GAAAGCGGGGATTGAAGTT-CAATCG-AACAg
gi|2 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAACCATGGACAGGACTAAAGAGTAGTACCGTCTTACTTT-GCATGAAGCTTGCACCAGCATGTAGCA-TCCCGACAC-TT--TGTT-TGGAA-GTGGATGTGGCCCCA---GTTTTTGTGACG-CTGTGGACCCCACTTGCA--AAAGC-AACACTTTTAACTACTT------TTTGGCTT--------T-CACAATACACAACT--------------------TCCTCAATGGCAAGTGGGGGGAG-----ACT-ACAGGTTTTGGAGCAGAAAAA---GTCAT-AACTTTCCGCGACGGACTCCTTAGTTCC---TG---ACCCCC------AGTAAAATGCGGCAGGGTGGGTAATAATGAAATGAACTG----AT-TGAAGTGTTGATAGCT-GTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAACCT--AGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACAACTGGAATAGAAAATGAAA-----GACAGCAGTAACTGTTGCAC------AAAATAA-------GAC----------CATGAAGAA-----------TTGGG-TGGGTGGGTAA--AATTGTTGGC--CAAGTAAACA---TGTT---TTA---GC-AAATAACTTCCGGTGT-------GCAGAAAATGAATAGTTCGTAATATTTC--GTACCAAT-ATTTCTCG-CGCTA---GAAAATGG
gi|3 : tttcCCTTCTCACCCTGTCTCTGCAGTGCTACCTGGTTTGAAATTTA---ACAT---T-----TTA-TAC---ATAATCC--ACAT------TGCACCAGACTGTAGCA-TCCC--CTCACTGAAGTG-AGG----TGGACGAGGTCCCAACCGGCCCCG----G-TGGTGGACCTCACT-ATA--GCAG---ATAACTGT--TTACTTGATAAATTAA-CTTGTTTAGACT------TAGTC--CTGTAAAT------TGCCACCTGCTTTAGGAGCAGGTGGGGGGGGGGGGGACACCCAGGTTTTGGAGCAG-GAAACCTGTCATTCACATACCATTACCGACTCCCCAGTTCCCAGTGCCTCCCCCCTTTTAAA-TAACATGCGACAG
gi|4 : gcATCTGGAAAAGAAA-----ACTGACAACAGCAGTAA--GTT--ACACAGAAAAAACAAACACGACAATT----CAAAACAGAAAGAATGACAATAAGGT--GGATGGGTGGG---CAAA-T-TTAGTCCCAAGTGTAAA---AGCC---G-T---GTGA--------CTTGCTTCTGTT-GTTGGAAATTAAACAA----------GTC--GTACCGAT-ATAACTC
gi|4 : aAAATTGAG-AA----------TCC--GTACCGAT-GACTCTCG-GGCTGACTGTAAGTAG---TT--AGATGAAGT-------------------AAACACCC--TCCAAAATTAATTTG-GACTA-TTTGATATAAAATCAAATAATCCTAAtggctaaataaaatgtgtcaaaattgagaatccgtaccgatgactctcgggctgactgtaagtagttagatgaagtaaacaccctccaaaattaatttggactatttgatataaaatcaaataatcctaa
gi|5 : aatctggaaaagaaaactgacaacagcagtaagttacacagaaaaaacaaacacgacaattcaaaacagaaagaatgacaataaggtggatgggtgggcaaatttagtcccaagtgtaaaagccgtgtgacttgcttctgttgttggaaattaaacaagtcgtaccgatataactctggctaaataaaatgtgtca--------CTGGATTAGGCCGAGCAGAATACGAATAG----------CCCACGTACCAATCAATACTCGGTGCTG----AAAGCGGGTGGTGAAGCTGAA-TCGGAATAGGACAACA-AAAAAACGCTTA--CCAAAATTAATTCG-GACTA--TTGATATAAAATCAAATAATCCTGA
gi|6 : CATGCACCAGTCTGTATAA-T--C--TTC-TC--AATGAAGGACGATGGATGT-GCCCTA---GCCCCt
gi|7 : atacacaagtcaatatGAAATTGATTAG----------ATC--GTACCGAT-AATTCTCG-CACTgctattacggatttatttgattttaacttgtgcagacttttagtcctgttaattccccctgcactagaagtagg
gi|7 : cggtgttgggGTAGAAATTG-ATAA----------CTC--GTACAAATGAGT-CTCG-CACTA---CAAAGaaattcatatttgtagaaattgataactcgtacaaatgagtctcgcactacaaagtaagcgatataagccctatacccaaaactactgtg
gi|8 : cggtgttggggaaattgattagatcgtaccgataattctcgcactaaattcatattt----------CTC--GTACCAAT-A-TACTCG-TGCTG---GAAAGCGGGGATTGAAGTTG-AATCG-AATAGGACAG-AC-AAAAACGCTAG-TCCAAAATTTATTCG-GACT-ATTTGATATAAAATTAAATGATCCTGAtaagcgatataagccctatacccaaaactactgtg
gi|9 : TAACAA--T-TTGGT--CAGGTAAAAACCAAGCCCCAACTCGGGCTA--------CTGGTTTAGGCG-AGCAGAATTTCGATAG-----------CC--GTACCAATAAATACTCG--GCTG---GAAAGCGGGGG-TGAAGCTGAtt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 11111 222 22 333 4444444444 1111 1 44444444 1 222222222222 11 22222 8888888888888888888888888888888888888888888 33333 1 1 11 1 222 44444444 1 11 2222 1 1 222 1 3333333 11 2222 3333333 1 1 222 1 1 1 3333333 1 44444444444 1 11 1 1 2222 6666666 777777777777777777777777777777777777777777777777777777 11 111 444444444444444444444 11111111111 1111111 111 111
lowQualScore : 3 1 7 3 55555 000 00 222 1 1 1111111111 8 1111 1 6 3 1 55555555 0 111111111111 1 88 3 55555 999 7777777777777777777777777777777777777777777 6 33333 3 7 2 88 3 1 7 000 88888888 7 5 22 88 4444 5 1 5 1 000 5 1111111 22 1 88 1 1 3333 2222222 1 5 22 1 5 111 1 5 1 1 33 5 5 3333333 5 1 33333333333 1 5 22 88 1 5 2 5 4 8888 1 1111111 6 555555555555555555555555555555555555555555555555555555 0 1 66 8 11 1 444 999999999999999999999 3 5 2 66666666666 44 9 4 1 99 666 0 6 7 5 5 8888888 444 5 888 3
lowQualScore : . . . . ..... ... .. ... . . .......... . .... . . . . ........ . ............ . .. . ..... ... ........................................... . ..... . . . .. . . . ... ........ . . .. .. .... . . . . ... . ....... .. . .. . . .... ....... . . .. . . ... . . . . .. . . ....... . . ........... . . .. .. . . . . . .... . ....... . ...................................................... . . .. . .. . ... ..................... . . . ........... .. . . . .. ... . . . . . ....... ... . ... .
lowQualScore : 3 0 3 3 33333 777 77 333 0 0 4444444444 0 8888 4 4 6 0 22222222 0 000000000000 0 55 2 00000 333 7777777777777777777777777777777777777777777 7 33333 3 3 3 33 3 0 3 777 33333333 3 5 00 00 5555 5 0 5 0 555 5 5555555 00 0 00 0 0 0000 0000000 0 5 00 0 0 000 0 5 0 0 55 5 5 0000000 0 0 00000000000 0 0 00 55 0 0 5 0 7 3333 0 3333333 7 000000000000000000000000000000000000000000000000000000 8 4 44 0 00 4 000 666666666666666666666 2 7 3 99999999999 22 2 2 6 77 444 1 2 1 7 7 3333333 333 0 999 2
consensus : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAGG-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTGAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCTT--TTAG-CC--CACAATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGTGGGGGGAG-----ACAAC-AGGTTTTGGAGCAGGAAAA--GTCAT-AACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTACA--GA-------AACA-GAC----CAAAGCACGAAGAAT-ACAG-AA--GGTTGGGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GCT---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
Reference ( family-2067 ) : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAGGTTAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-TTGAAGTG-AGGACG-TGGACGTGGCCCCAACCGNCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGC-GACAACTNTAACTACTT-----ATTAGGCTT--TTAG-CT--CACAATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGTGGGGGGAG-----ACAAC-AGGTTTTGGAGCAGAAAAA--GTCAT-AACNTTCCGCGACGGACTCCCCAGTTCCCAGTGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCCAACATCTGGA----ANAGAAAACTG--G-GACAGCAGTAACTGTTACA-AGAAAAAAC-AACAAGAC---TCAAAGCACGAAGAAT-ACAG-AA--GGTTGGGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GCT---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CCC--GTACCAAT-ANTACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
gi|1 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAAGCATGGACATG-CAAAAGGTTAGTGC-GCCTAACCTTAGCCTGACGCATGCACCAGACTGTAGCATCCCG-CCC-TT--AGTT-AGGACG-TGGATGTGA-CCCA---GATCTTGT--TGTCTGTG-GACCCCGCTTGCA--AAA---AACAACTTTAACTAC-T-----ATTAGGCTT--TTAG-CCTACACAATACACAACAGTAGATGATACACGCCC-CCTGCCTTAATGGCAGGTGGGAGGAG-----ACAAC-AGGTTTTGG-GCAG-AAAA--GTCAT-AACCTTCCGCGACGGACTCCCCAG-CCCCA--ACCCCCC--------AG-AAAATGCGACAGGG-AGATAACACAAAAAT--ACTATATAATATGAAATGCTGGTTGTTTGTTG---TAACC-TGA-------ACTAGCCAAGCTGAAACCTCTGGACATACCTCTATTCGAGGTTGCCTCTAA-------CTGTAAA-CCTAAAACATAAGCCCCAGGTTCA---TTTTACACAAATGCGAGATAAACAACGTCCCATTA-TCAC-TTG-------GTCCA-ATGGTCCT-----------ATTTCGTCT-GAGGCTGCCTTAAGTGCTC--TGCAGGCGGCCTGCATAAATGCATCTGAA-ACCTGGAATTGAAAGAAAA-------GACAGCAGTAACTGTTA-------------------------CAAAGTAC----AAT-ACAG-AAAGGGT--GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---ATT---GC-A--------CTGGTTTAGGCT-AGCAGAAATCGAATAG----------CCC--GTACCAAT-ACTACTCG-TGCTG---GAAAACGGGGGTTGAAGCGGAAATCG-AATAGGACA-ACACAAA-AAACG-TTA-TCC-AAATTAATTCG-GACTAATTTGATAT---ATCAACTAATCCTGA
gi|10 : tg----------CTC--GTACCAAT-AATACTAG-TGCTT---GGAAGCGGGGATTGAAGTTG-AATCG-AATAGGACA-AC-------AACGCTCAGTCCAAAATTAATTCG-GACTAA-TTGAT-T-AAATTAATGGATCCTGA
gi|11 : ATGAACCTGCCTGTAGCATTCCC-TAT-CTGAAGTG-A---TG-TGGGCGAGGTCCCAACCGGCCCTG--------GTGTGACCTCACTATCATTATAGCAGATAACTGT--TTACTT-----
gi|12 : atccatCTCG-TGCTG---GAA-GCGGGGGTTGAAGCTGAA-TCG-AATAGGACA-ACA-AAA--AACGCTTA-TCCAAAATTAATTCGCGACT-ATTTGATATAAAATCAAATAATCCTGA
gi|13 : CT-GGCTAAAATTGAG-AA----------TTC--GTACCGAT-GATACTCG-GGCTG---
gi|13 : ataactTGACTTG-GACTA-TTTGATATAAAATCAAATAACCCTGacttggactatttgatataaaatcaaataaccctgtttatctacaaaa
gi|14 : ataactctggctaaaattgagaattcgtaccgatgatactcgggcTAACGAATT-TTGGT--CAGGTAAAGA---AACC---ACT---GC-A--------CTGGTTTAGGCT-AGCAGAAATAGAATAG----------CCC--GTACCAAT-Atttatctacaaaa
gi|15 : aA-ATA-AAATAAACACCT---CCAAAAATGAATTG-GACTA-TTT-ATATAAAATCAAATAATCCa
gi|16 : acagtaaagtagatta--GTACCAAT-ATTACTCG-TGCTG---GAAAGCGGGGATTGAAGTT-CAATCG-AACAg
gi|2 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAACCATGGACAGGACTAAAGAGTAGTACCGTCTTACTTT-GCATGAAGCTTGCACCAGCATGTAGCATCCCGACAC-TTT--GTT-TGGAAG-TGGATGTGGCCCCA---GTTTTTGTGACG-CTGTG-GACCCCACTTGCA--AAAGC-AACACTTTTAACTACTT-----TTT-GGCTT--T--------CACAATACACAACT--------------------T-CCTCAATGGCAAGTGGGGGGAG-----ACTAC-AGGTTTTGGAGCAGAAAAA--GTCAT-AACTTTCCGCGACGGACTCCTTAGTTCC---TGACCCCC--------AGTAAAATGCGGCAGGGTGGGTAATAATGAAATGAACTG----AT-TGAAGTGTTGATAGCT-GTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAACCT--AGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACAACTGGA----ATAGAAAA-TGAAA-GACAGCAGTAACTGTTGCA-CAA-------AATAAGAC---------CATGAAGAA-------------TTGGGTGGGTGGGTAA--AATTGTTGGC--CAAGTAAACA---TGTT---TTA---GC-AAATAACTTCCGGTGT-------GCAGAAAATGAATAGTTCGTAATATTTC--GTACCAAT-ATTTCTCG-CGCTA---GAAAATGG
gi|3 : tttcCCTTCTCACCCTGTCTCTGCAGTGCTACCTGGTTTGAAATTTA---ACATT-TTA--------TAC-A--TAATCC--ACAT------TGCACCAGACTGTAGCATCCC--CTCACTGAAGTG-AGG----TGGACGAGGTCCCAACCGGCCCCGG--TG---GTG-GACCTCACT------ATAGCAGATAACTGT--TTACTTGATAAATTAA-CTTGTTTAGACT--TA--GT---C--CTGTAAAT------TG-CCACCTGCTTTAGGAGCAGGTGGGGGGGGGGGGGACACCCAGGTTTTGGAGCAGGAAACCTGTCATTCACATACCATTACCGACTCCCCAGTTCCCAGTGCCTCCCCCCTTTTAAATAACATGCGACAG
gi|4 : gcATCTGGA----AAAGAAAACTG--ACAACAGCAGTAA--GTTACACAGAAAAAACAAACACGACAATTCAAAACAGAAAGAATGACAATAA--GG-TGGATGGGTGGG---CAAA-T-TTAGTCCCAAGTGTAAA---AGCC---G-T---GTGA--------CTTGCTTCTGTT-GTTGGAAATTAAACAA----------GTC--GTACCGAT-ATAACTC
gi|4 : aAAATTGAG-AA----------TCC--GTACCGAT-GACTCTCG-GGCTGACTGTAAGTAG---TT--AGATGAAGT---------------------AAACACCC--TCCAAAATTAATTTG-GACTA-TTTGATATAAAATCAAATAATCCTAAtggctaaataaaatgtgtcaaaattgagaatccgtaccgatgactctcgggctgactgtaagtagttagatgaagtaaacaccctccaaaattaatttggactatttgatataaaatcaaataatcctaa
gi|5 : aatctggaaaagaaaactgacaacagcagtaagttacacagaaaaaacaaacacgacaattcaaaacagaaagaatgacaataaggtggatgggtgggcaaatttagtcccaagtgtaaaagccgtgtgacttgcttctgttgttggaaattaaacaagtcgtaccgatataactctggctaaataaaatgtgtca--------CTGGATTAGGCCGAGCAGAATACGAATAG----------CCCACGTACCAATCAATACTCGGTGCTG----AAAGCGGGTGGTGAAGCTGAA-TCGGAATAGGACA-ACA-AAA-AAACGCTTA--CCAAAATTAATTCG-GACTA--TTGATATAAAATCAAATAATCCTGA
gi|6 : CATGCACCAGTCTGTATAATCTT--CTC-----AATGAAGGACGATGGATGT-GCCCTAGCCt
gi|7 : atacacaagtcaatatGAAATTGATTAG----------ATC--GTACCGAT-AATTCTCG-CACTccgctattacggatttatttgattttaacttgtgcagacttttagtcctgttaattccccctgcactagaagtagg
gi|7 : cggtgttgggGTAGAAATTG-ATAA----------CTC--GTACAAATGAGT-CTCG-CACTA---CAAAGaaattcatatttgtagaaattgataactcgtacaaatgagtctcgcactacaaagtaagcgatataagccctatacccaaaactactgtg
gi|8 : cggtgttggggaaattgattagatcgtaccgataattctcgcactaaattcatattt----------CTC--GTACCAAT-A-TACTCG-TGCTG---GAAAGCGGGGATTGAAGTTG-AATCG-AATAGGACAGAC---AA-AAACGCTAG-TCCAAAATTTATTCG-GACT-ATTTGATATAAAATTAAATGATCCTGAtaagcgatataagccctatacccaaaactactgtg
gi|9 : TAACAA--T-TTGGT--CAGGTAAAAACCAAGCCCCAACTCGGGCTA--------CTGGTTTAGGCG-AGCAGAATTTCGATAG-----------CC--GTACCAATAAATACTCG--GCTG---GAAAGCGGGGG-TGAAGCTGAtt
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 222 22 333 1111111111 1111 1 44444444 1 111111 11 22222 777777777777777777777777777777777777777777 33333 1 11 1 2222 44444444 1 11 2222 1 1 222 1 3333333 11 2222 3333333 1 1 222 1 1 1 3333333 1 44444444444 1 11 1 1 2222 44444444 666666666666666666666666666666666666666666666666666666 11 111 4444444444444444444444 1111111111 1111111 111 111
lowQualScore : 3 1 7 3 999999 000 00 222 1 1 3 9999999999 8 1111 1 6 3 0 55555555 0 999999 44 6 1 88 3 55555 999 222222222222222222222222222222222222222222 6 33333 3 7 6 88 3 1 7 6666 88888888 7 5 22 88 4444 5 1 5 1 000 5 1111111 22 1 88 1 1 3333 2222222 1 5 22 1 5 111 1 5 1 1 33 5 5 3333333 5 1 33333333333 1 5 22 88 1 5 2 5 1 8888 00000000 6 000000000000000000000000000000000000000000000000000000 0 1 0 8 0 11 1 444 9999999999999999999999 3 5 33 4444444444 0 44 1 6 2 99 666 0 6 7 5 5 8888888 444 5 888 3
lowQualScore : . . . . ...... ... .. ... . . . .......... . .... . . . . ........ . ...... .. . . .. . ..... ... .......................................... . ..... . . . .. . . . .... ........ . . .. .. .... . . . . ... . ....... .. . .. . . .... ....... . . .. . . ... . . . . .. . . ....... . . ........... . . .. .. . . . . . .... ........ . ...................................................... . . . . . .. . ... ...................... . . .. .......... . .. . . . .. ... . . . . . ....... ... . ... .
lowQualScore : 3 0 3 3 777777 777 77 333 0 0 2 6666666666 0 8888 4 4 6 2 22222222 0 222222 22 5 0 55 2 00000 333 333333333333333333333333333333333333333333 7 33333 3 3 7 33 3 0 3 3333 33333333 3 5 00 00 5555 5 0 5 0 555 5 5555555 00 0 00 0 0 0000 0000000 0 5 00 0 0 000 0 5 0 0 55 5 5 0000000 0 0 00000000000 0 0 00 55 0 0 5 0 0 3333 77777777 7 000000000000000000000000000000000000000000000000000000 8 4 8 0 8 00 4 000 6666666666666666666666 2 7 88 6666666666 1 22 1 2 6 77 444 1 2 1 7 7 3333333 333 0 999 2
consensus : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTNAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCTT--TTAG-C--CACAATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGTGGGGGGAG-----ACAAC-AGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTACA------AAA---AC---------CAAANCACGAAGAAT-ACAG-AA--GGT-GGGTGGGTGGGTAACGAATT-TTGGTC--AGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
Reference ( family-2067 ) : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTGAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCTT--TTAGCC--CACAATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGTGGGGGGAG-----ACAAC-AGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTACA-----GAAACAGAC---------CAAAGCACGAAGAAT-ACAG-AA--GGTTGGGTGGGTGGGTAACGAATT-TTGGTC--AGGTAAAGA---AGCC---GC-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
gi|1 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAAGCATGGACATG-CAAAAG-GTTAGTGC-GCCTAACCTTAGCCTGACGCATGCACCAGACTGTAGCATCCCG-CCC-TT--AGTT-AGGACG-TGGATGTGA-CCCA---GATCTTGT--TGTCTGTG-GACCCCGCTTGCA--AA---AAACAACTTTAACTAC-T-----ATTAGGCTT--TTAGCCTACACAATACACAACAGTAGATGATACACGCCC-CCTGCCTTAATGGCAGGTGGGAGGAG-----ACAAC-AGGTTTTGG-GCA-GAAAA--GTCA-TAACCTTCCGCGACGGACTCCCCAG-CCCCA--ACCCCCC--------AG-AAAATGCGACAGGG-AGATAACACAAAAAT--ACTATATAATATGAAATGCTGGTTGTTTGTTG---TAACC-TGA-------ACTAGCCAAGCTGAAACCTCTGGACATACCTCTATTCGAGGTTGCCTCTAA-------CTGTAAA-CCTAAAACATAAGCCCCAGGTTCA---TTTTACACAAATGCGAGATAAACAACGTCCCATTA-TCAC-TTG-------GTCCA-ATGGTCCT-----------ATTTCGTCT-GAGGCTGCCTTAAGTGCTC--TGCAGGCGGCCTGCATAAATGCATCTGAA-ACCTGGAATTGAAAGAAA------A-GACAGCAGTAACTGTTA-------------------------CAAAGTAC----AAT-ACAG-AAAGGGT--GGTGGGTGGGTAACGAATT-TTGGTC--AGGTAAAGA---AGCC---AT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATCGAATAG----------CCC--GTACCAAT-ACTACTCG-TGCTG---GAAAACGGGGGTTGAAGCGGAAATCG-AATAGGACA-ACACAAA-AAACG-TTA-TCC-AAATTAATTCG-GACTAATTTGATAT---ATCAACTAATCCTGA
gi|10 : tg----------CTC--GTACCAAT-AATACTAG-TGCTT---GGAAGCGGGGATTGAAGTTG-AATCG-AATAGGACA-AC-------AACGCTCAGTCCAAAATTAATTCG-GACTAA-TTGAT-T-AAATTAATGGATCCTGA
gi|11 : ATGAACCTGCCTGTAGCATTCCC-TAT-CTGAAGTG-A---TG-TGGGCGAGGTCCCAACCGGCCCTG--------GTGTGACCTCACTATCATTATAGCAGATAACTGT--TTACTT-----
gi|12 : atccatCTCG-TGCTG---GAA-GCGGGGGTTGAAGCTGAA-TCG-AATAGGACA-ACA-AAA--AACGCTTA-TCCAAAATTAATTCGCGACT-ATTTGATATAAAATCAAATAATCCTGA
gi|13 : CT-GGCTAAAATTGAG-AA----------TTC--GTACCGAT-GATACTCG-GGCTG---
gi|13 : ataactTGACTTG-GACTA-TTTGATATAAAATCAAATAACCCTGacttggactatttgatataaaatcaaataaccctgtttatctacaaaa
gi|14 : ataactctggctaaaattgagaattcgtaccgatgatactcgggcTAACGAATT-TTGGTC--AGGTAAAGA---AACC---AC-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATAGAATAG----------CCC--GTACCAAT-AAtttatctacaaaa
gi|15 : aA-ATA-AAATAAACACCT---CCAAAAATGAATTG-GACTA-TTT-ATATAAAATCAAATAATCC
gi|16 : acagtaaagtagatta--GTACCAAT-ATTACTCG-TGCTG---GAAAGCGGGGATTGAAGTT-CAATCG-AACAg
gi|2 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAACCATGGACAGGACTAAAGAG-TAGTACCGTCTTACTTT-GCATGAAGCTTGCACCAGCATGTAGCATCCCGACAC-TTT--GTT-TGGAAG-TGGATGTGGCCCCA---GTTTTTGTGACG-CTGTG-GACCCCACTTGCA--AAAGCA-ACACTTTTAACTACTT-----TTT-GGCTT--T-------CACAATACACAACT--------------------T-CCTCAATGGCAAGTGGGGGGAG-----ACTAC-AGGTTTTGGAGCAGAAAAA--GTCA-TAACTTTCCGCGACGGACTCCTTAGTTCC---TGACCCCC--------AGTAAAATGCGGCAGGGTGGGTAATAATGAAATGAACTG----AT-TGAAGTGTTGATAGCT-GTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAACCT--AGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACAACTGGA----ATAGAAAA-TGAAA-GACAGCAGTAACTGTTGCA-----CAAA---AT---------AAGACCATGAAGAA-------------TTGGGTGGGTGGGTAA--AATTGTTGGCC--AAGTAAACA---TGTT---TT-A---GC-AAATAACTTCCGGTGT-------GCAGAAAATGAATAGTTCGTAATATTTC--GTACCAAT-ATTTCTCG-CGCTA---GAAAATGG
gi|3 : tttcCCTTCTCACCCTGTCTCTGCAGTGCTACCTGGTTTGAAATTTA---ACATT-TTA---------TAC-A--TAATCC--ACAT------TGCACCAGACTGTAGCATCCC--CTCACTGAAGTG-AGG----TGGACGAGGTCCCAACCGGCCCCGG--TG---GTG-GACCTCACT------ATAGCAGATAACTGT--TTACTTGATAAATTAA-CTTGTTTAGAC--T----TAGTC--CTGTAAAT------TG-CCACCTGCTTTAGGAGCAGGTGGGGGGGGGGGGGACACCCAGGTTTTGGAGCAGGAAACCTGTCATTCACATACCATTACCGACTCCCCAGTTCCCAGTGCCTCCCCCCTTTTAAATAACATGCGACAG
gi|4 : gcATCTGGA----AAAGAAAACTG--ACAACAGCAGTAA--GTTACACAGAAAAAACAAACACGACAATTCAAAACAGAAAGAATGACAATAA--GGT-GGATGGGTGGG---CAAATT-T-AGTCCCAAGTGTAAA---AGCC---GTGT---G--A--------CTTGCTTCTGTT-GTTGGAAATTAAACAA----------GTC--GTACCGAT-ATAACTC
gi|4 : aAAATTGAG-AA----------TCC--GTACCGAT-GACTCTCG-GGCTGACTGTAAGTAG---TT--AGATGAAGT---------------------AAACACCC--TCCAAAATTAATTTG-GACTA-TTTGATATAAAATCAAATAATCCTAAtggctaaataaaatgtgtcaaaattgagaatccgtaccgatgactctcgggctgactgtaagtagttagatgaagtaaacaccctccaaaattaatttggactatttgatataaaatcaaataatcctaa
gi|5 : aatctggaaaagaaaactgacaacagcagtaagttacacagaaaaaacaaacacgacaattcaaaacagaaagaatgacaataaggtggatgggtgggcaaatttagtcccaagtgtaaaagccgtgtgacttgcttctgttgttggaaattaaacaagtcgtaccgatataactctggctaaataaaatgtgtca--------CTGGATTAGGCCGAGCAGAATACGAATAG----------CCCACGTACCAATCAATACTCGGTGCTG----AAAGCGGGTGGTGAAGCTGAA-TCGGAATAGGACA-ACA-AAA-AAACGCTTA--CCAAAATTAATTCG-GACTA--TTGATATAAAATCAAATAATCCTGA
gi|6 : CATGCACCAGTCTGTATAAT-----CTT-CTCAA-TGAAGGACGATGGATGT-GCCCTAGCCt
gi|7 : atacacaagtcaatatGAAATTGATTAG----------ATC--GTACCGAT-AATTCTCG-CACTccgctattacggatttatttgattttaacttgtgcagacttttagtcctgttaattccccctgcactagaagtagg
gi|7 : cggtgttgggGTAGAAATTGA-TAA----------CTC--GTACAAAT-GAGTCTCG-CACTA---CAAAGaaattcatatttgtagaaattgataactcgtacaaatgagtctcgcactacaaagtaagcgatataagccctatacccaaaactactgtg
gi|8 : cggtgttggggaaattgattagatcgtaccgataattctcgcactaaattcatattt----------CTC--GTACCAAT-A-TACTCG-TGCTG---GAAAGCGGGGATTGAAGTTG-AATCG-AATAGGACAGAC---AA-AAACGCTAG-TCCAAAATTTATTCG-GACT-ATTTGATATAAAATTAAATGATCCTGAtaagcgatataagccctatacccaaaactactgtg
gi|9 : TAACAA--T-TTGGTC--AGGTAAAAACCAAGCCCCAAC-TCGGGCTA--------CTGGTTTAGGCG-AGCAGAATTTCGATAG----------C-C--GTACCAATAAATACTCG--GCTG---GAAAGCGGGGG-TGAAGCTGAtt
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 1 1 222222 222 22 333 1111111111 1111 1 44444444 1 111111 11 22222 4444444444 777777777777777777 33333 1 11 1 2222 44444444 1 11 2222 1 1 222 1 3333333 11 2222 3333333 1 1 222 1 1 1 3333333 1 44444444444 1 11 1 1 2222 44444444 22222222222222222222222222 11 3333333333333 11 111 4444444444444444444444 1111111111 1111111 111 111
lowQualScore : 3 1 7 3 999999 000 00 222 1 1 3 8888888888 8 1111 1 6 3 0 55555555 0 999999 44 6 1 88 3 55555 999 4444444444 7 7 000000000000000000 6 33333 3 7 6 88 3 1 7 6666 88888888 7 5 22 88 4444 5 1 5 1 000 5 1111111 22 1 88 1 1 3333 2222222 1 5 22 1 5 111 1 5 1 1 33 5 5 3333333 5 1 33333333333 1 5 22 88 1 5 2 5 1 8888 00000000 6 55555555555555555555555555 1 55 7777777777777 0 1 66 8 11 1 444 7777777777777777777777 3 5 33 4444444444 0 44 1 6 2 99 666 0 6 7 5 5 8888888 444 5 888 3
lowQualScore : . . . . ...... ... .. ... . . . .......... . .... . . . . ........ . ...... .. . . .. . ..... ... .......... . . .................. . ..... . . . .. . . . .... ........ . . .. .. .... . . . . ... . ....... .. . .. . . .... ....... . . .. . . ... . . . . .. . . ....... . . ........... . . .. .. . . . . . .... ........ . .......................... . .. ............. . . .. . .. . ... ...................... . . .. .......... . .. . . . .. ... . . . . . ....... ... . ... .
lowQualScore : 3 0 3 3 777777 777 77 333 0 0 2 4444444444 0 8888 4 4 6 2 22222222 0 222222 22 5 0 55 2 00000 333 0000000000 3 3 000000000000000000 7 33333 3 3 7 33 3 0 3 3333 33333333 3 5 00 00 5555 5 0 5 0 555 5 5555555 00 0 00 0 0 0000 0000000 0 5 00 0 0 000 0 5 0 0 55 5 5 0000000 0 0 00000000000 0 0 00 55 0 0 5 0 0 3333 77777777 7 33333333333333333333333333 0 77 3333333333333 8 4 44 0 00 4 000 0000000000000000000000 2 7 88 6666666666 1 22 1 2 6 77 444 1 2 1 7 7 3333333 333 0 999 2
consensus : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTNAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCTT--TTAG----CACAATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGTGGGGGGAG-----ACAAC-AGGTTTTGGAGCAGGAAAA--GTCAT-AACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
Reference ( family-2067 ) : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTNAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCTT--TTAGC---CACAATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGTGGGGGGAG-----ACAAC-AGGTTTTGGAGCAGGAAAA--GTCAT-AACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
gi|1 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAAGCATGGACATG-CAAAAG-GTTAGTGC-GCCTAACCTTAGCCTGACGCATGCACCAGACTGTAGCATCCCG-CCC-TT--AGTT-AGGACG-TGGATGTGA-CCCA---GATCTTGT--TGTCTGTG-GACCCCGCTTGCA--AA---AAACAACTTTAACTAC-T-----ATTAGGCTT--TTAGCCTACACAATACACAACAGTAGATGATACACGCCC-CCTGCCTTAATGGCAGGTGGGAGGAG-----ACAAC-AGGTTTTGG-GCA-GAAAA--GTCAT-AACCTTCCGCGACGGACTCCCCAG-CCCCA--ACCCCCC--------AG-AAAATGCGACAGGG-AGATAACACAAAAAT--ACTATATAATATGAAATGCTGGTTGTTTGTTG---TAACC-TGA-------ACTAGCCAAGCTGAAACCTCTGGACATACCTCTATTCGAGGTTGCCTCTAA-------CTGTAAA-CCTAAAACATAAGCCCCAGGTTCA---TTTTACACAAATGCGAGATAAACAACGTCCCATTA-TCAC-TTG-------GTCCA-ATGGTCCT-----------ATTTCGTCT-GAGGCTGCCTTAAGTGCTC--TGCAGGCGGCCTGCATAAATGCATCTGAA-ACCTGGAATTGAAAGAAA------A-GACAGCAGTAACTGTTA--------------------------CAAAGTAC----AAT-ACAG-AAAGGGTGGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---AT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATCGAATAG----------CCC--GTACCAAT-ACTACTCG-TGCTG---GAAAACGGGGGTTGAAGCGGAAATCG-AATAGGACA-ACACAAA-AAACG-TTA-TCC-AAATTAATTCG-GACTAATTTGATAT---ATCAACTAATCCTGA
gi|10 : tg----------CTC--GTACCAAT-AATACTAG-TGCTT---GGAAGCGGGGATTGAAGTTG-AATCG-AATAGGACA-AC-------AACGCTCAGTCCAAAATTAATTCG-GACTAA-TTGAT-T-AAATTAATGGATCCTGA
gi|11 : ATGAACCTGCCTGTAGCATTCCC-TAT-CTGAAGTG-A---TG-TGGGCGAGGTCCCAACCGGCCCTG--------GTGTGACCTCACTATCATTATAGCAGATAACTGT--TTACTT-----
gi|12 : atccatCTCG-TGCTG---GAA-GCGGGGGTTGAAGCTGAA-TCG-AATAGGACA-ACA-AAA--AACGCTTA-TCCAAAATTAATTCGCGACT-ATTTGATATAAAATCAAATAATCCTGA
gi|13 : CT-GGCTAAAATTGAG-AA----------TTC--GTACCGAT-GATACTCG-GGCTG---
gi|13 : ataactTGACTTG-GACTA-TTTGATATAAAATCAAATAACCCTGacttggactatttgatataaaatcaaataaccctgtttatctacaaaa
gi|14 : ataactctggctaaaattgagaattcgtaccgatgatactcgggcTAACGAATT-TTGGT--CAGGTAAAGA---AACC---AC-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATAGAATAG----------CCC--GTACCAAT-AAtttatctacaaaa
gi|15 : aA-ATA-AAATAAACACCT---CCAAAAATGAATTG-GACTA-TTT-ATATAAAATCAAATAATCC
gi|16 : acagtaaagtagatta--GTACCAAT-ATTACTCG-TGCTG---GAAAGCGGGGATTGAAGTT-CAATCG-AACAg
gi|2 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAACCATGGACAGGACTAAAGAG-TAGTACCGTCTTACTTT-GCATGAAGCTTGCACCAGCATGTAGCATCCCGACAC-TTT--GTT-TGGAAG-TGGATGTGGCCCCA---GTTTTTGTGACG-CTGTG-GACCCCACTTGCA--AAAGCA-ACACTTTTAACTACTT-----TTT-GGCTT--T-------CACAATACACAACT--------------------T-CCTCAATGGCAAGTGGGGGGAG-----ACTAC-AGGTTTTGGAGCAGAAAAA--GTCAT-AACTTTCCGCGACGGACTCCTTAGTTCC---TGACCCCC--------AGTAAAATGCGGCAGGGTGGGTAATAATGAAATGAACTG----AT-TGAAGTGTTGATAGCT-GTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAACCT--AGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACAACTGGA----ATAGAAAA-TGAAA-GACAGCAGTAACTGTTGC-----ACAAAAT-------------AAGACCATGAAGAAT----------TG-GGTGGGTGGGTAA--AATTGTTGGC--CAAGTAAACA---TGTT---TT-A---GC-AAATAACTTCCGGTGT-------GCAGAAAATGAATAGTTCGTAATATTTC--GTACCAAT-ATTTCTCG-CGCTA---GAAAATGG
gi|3 : tttcCCTTCTCACCCTGTCTCTGCAGTGCTACCTGGTTTGAAATTTA---ACATT-TTA---------TAC-A--TAATCC--ACAT------TGCACCAGACTGTAGCATCCC--CTCACTGAAGTG-AGG----TGGACGAGGTCCCAACCGGCCCCGG--TG---GTG-GACCTCACT------ATAGCAGATAACTGT--TTACTTGATAAATTAA-CTTGTTTAGA---CTTAGT---C--CTGTAAAT------TG-CCACCTGCTTTAGGAGCAGGTGGGGGGGGGGGGGACACCCAGGTTTTGGAGCAGGAAACCTGTCATTCACATACCATTACCGACTCCCCAGTTCCCAGTGCCTCCCCCCTTTTAAATAACATGCGACAG
gi|4 : gcATCTGGA----AAAGAAAACTG--ACAACAGCAGTAA--GTTACACAGAA-AAAACAAACACGACAATTCAAAACAGAAAGAATGACAATAAGGTG-GATGGGTGGG---CAAA-T-TTAGTCCCAAGTGTAAA---AGCC---GTGT---G--A--------CTTGCTTCTGTT-GTTGGAAATTAAACAA----------GTC--GTACCGAT-ATAACTC
gi|4 : aAAATTGAG-AA----------TCC--GTACCGAT-GACTCTCG-GGCTGACTGTAAGTAG---TT--AGATGAAGT---------------------AAACACCC--TCCAAAATTAATTTG-GACTA-TTTGATATAAAATCAAATAATCCTAAtggctaaataaaatgtgtcaaaattgagaatccgtaccgatgactctcgggctgactgtaagtagttagatgaagtaaacaccctccaaaattaatttggactatttgatataaaatcaaataatcctaa
gi|5 : aatctggaaaagaaaactgacaacagcagtaagttacacagaaaaaacaaacacgacaattcaaaacagaaagaatgacaataaggtggatgggtgggcaaatttagtcccaagtgtaaaagccgtgtgacttgcttctgttgttggaaattaaacaagtcgtaccgatataactctggctaaataaaatgtgtca--------CTGGATTAGGCCGAGCAGAATACGAATAG----------CCCACGTACCAATCAATACTCGGTGCTG----AAAGCGGGTGGTGAAGCTGAA-TCGGAATAGGACA-ACA-AAA-AAACGCTTA--CCAAAATTAATTCG-GACTA--TTGATATAAAATCAAATAATCCTGA
gi|6 : CATGCACCAGTCTGTATAAT-----CTT-CTCAA-TGAAGGACGATGGATGT-GCCCTAGCCt
gi|7 : atacacaagtcaatatGAAATTGATTAG----------ATC--GTACCGAT-AATTCTCG-CACTccgctattacggatttatttgattttaacttgtgcagacttttagtcctgttaattccccctgcactagaagtagg
gi|7 : cggtgttgggGTAGAAATTGA-TAA----------CTC--GTACAAAT-GAGTCTCG-CACTA---CAAAGaaattcatatttgtagaaattgataactcgtacaaatgagtctcgcactacaaagtaagcgatataagccctatacccaaaactactgtg
gi|8 : cggtgttggggaaattgattagatcgtaccgataattctcgcactaaattcatattt----------CTC--GTACCAAT-A-TACTCG-TGCTG---GAAAGCGGGGATTGAAGTTG-AATCG-AATAGGACAGAC---AA-AAACGCTAG-TCCAAAATTTATTCG-GACT-ATTTGATATAAAATTAAATGATCCTGAtaagcgatataagccctatacccaaaactactgtg
gi|9 : TAACAA--T-TTGGT--CAGGTAAAAACCAAGCCCCAAC-TCGGGCTA--------CTGGTTTAGGCG-AGCAGAATTTCGATAG----------C-C--GTACCAATAAATACTCG--GCTG---GAAAGCGGGGG-TGAAGCTGAtt
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 1 1 222222 222 22 333 1111111111 111111 1 44444444 1 111111 11 22222 11 777777777777777777777777777777777777777777777 33333 1 11 1 2222 44444444 1 11 2222 1 1 222 1 3333333 11 2222 3333333 1 1 222 1 1 1 3333333 1 44444444444 1 11 1 1 2222 44444444 22222222222222222222222222 11 3333333333333 11 111 4444444444444444444444 1111111111 1111111 111 111
lowQualScore : 3 1 7 3 999999 000 00 222 1 1 3 8888888888 333333 8 1 6 3 0 55555555 0 999999 44 6 1 88 3 55555 44 888888888888888888888888888888888888888888888 6 33333 3 7 6 88 3 1 7 6666 88888888 7 5 22 88 4444 5 1 5 1 000 5 1111111 22 1 88 1 1 3333 2222222 1 5 22 1 5 111 1 5 1 1 33 5 5 3333333 5 1 33333333333 1 5 22 88 1 5 2 5 1 8888 00000000 6 55555555555555555555555555 1 55 7777777777777 0 1 66 8 11 1 444 7777777777777777777777 3 5 33 4444444444 0 44 1 6 2 99 666 0 6 7 5 5 8888888 444 5 888 3
lowQualScore : . . . . ...... ... .. ... . . . .......... ...... . . . . . ........ . ...... .. . . .. . ..... .. ............................................. . ..... . . . .. . . . .... ........ . . .. .. .... . . . . ... . ....... .. . .. . . .... ....... . . .. . . ... . . . . .. . . ....... . . ........... . . .. .. . . . . . .... ........ . .......................... . .. ............. . . .. . .. . ... ...................... . . .. .......... . .. . . . .. ... . . . . . ....... ... . ... .
lowQualScore : 3 0 3 3 777777 777 77 333 0 0 2 4444444444 000000 0 4 4 6 2 22222222 0 222222 22 5 0 55 2 00000 00 000000000000000000000000000000000000000000000 7 33333 3 3 7 33 3 0 3 3333 33333333 3 5 00 00 5555 5 0 5 0 555 5 5555555 00 0 00 0 0 0000 0000000 0 5 00 0 0 000 0 5 0 0 55 5 5 0000000 0 0 00000000000 0 0 00 55 0 0 5 0 0 3333 77777777 7 33333333333333333333333333 0 77 3333333333333 8 4 44 0 00 4 000 0000000000000000000000 2 7 88 6666666666 1 22 1 2 6 77 444 1 2 1 7 7 3333333 333 0 999 2
consensus : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTNAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCT--TTTAG----CAC--AATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGT-----GGGGGGAGACA-ACAGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
Reference ( family-2067 ) : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTNAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCT--TTTAG----CAC--AATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGT-----GGGGGGAGACA-ACAGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
gi|1 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAAGCATGGACATG-CAAAAG-GTTAGTGC-GCCTAACCTTAGCCTGACGCATGCACCAGACTGTAGCATCCCG-CCC-TT--AGTT-AGGACG-TGGATGTGA-CCCA---GATCTTGT--TGTCTGTG-GACCCCGCTTGCA--AA---AAACAACTTTAACTAC-T-----ATTAGGCT--TTTAGCCTACAC--AATACACAACAGTAGATGATACACGCCC-CCTGCCTTAATGGCAGGT-----GGGAGGAGACA-ACAGGTTTTGG-GCA-GAAAA--GTCA-TAACCTTCCGCGACGGACTCCCCAG-CCCCA--ACCCCCC--------AG-AAAATGCGACAGGG-AGATAACACAAAAAT--ACTATATAATATGAAATGCTGGTTGTTTGTTG---TAACC-TGA-------ACTAGCCAAGCTGAAACCTCTGGACATACCTCTATTCGAGGTTGCCTCTAA-------CTGTAAA-CCTAAAACATAAGCCCCAGGTTCA---TTTTACACAAATGCGAGATAAACAACGTCCCATTA-TCAC-TTG-------GTCCA-ATGGTCCT-----------ATTTCGTCT-GAGGCTGCCTTAAGTGCTC--TGCAGGCGGCCTGCATAAATGCATCTGAA-ACCTGGAATTGAAAGAAA------A-GACAGCAGTAACTGTTA--------------------------CAAAGTAC----AAT-ACAG-AAAGGGTGGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---AT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATCGAATAG----------CCC--GTACCAAT-ACTACTCG-TGCTG---GAAAACGGGGGTTGAAGCGGAAATCG-AATAGGACA-ACACAAA-AAACG-TTA-TCC-AAATTAATTCG-GACTAATTTGATAT---ATCAACTAATCCTGA
gi|10 : tg----------CTC--GTACCAAT-AATACTAG-TGCTT---GGAAGCGGGGATTGAAGTTG-AATCG-AATAGGACA-AC-------AACGCTCAGTCCAAAATTAATTCG-GACTAA-TTGAT-T-AAATTAATGGATCCTGA
gi|11 : ATGAACCTGCCTGTAGCATTCCC-TAT-CTGAAGTG-A---TG-TGGGCGAGGTCCCAACCGGCCCTG--------GTGTGACCTCACTATCATTATAGCAGATAACTGT--TTACTT-----
gi|12 : atccatCTCG-TGCTG---GAA-GCGGGGGTTGAAGCTGAA-TCG-AATAGGACA-ACA-AAA--AACGCTTA-TCCAAAATTAATTCGCGACT-ATTTGATATAAAATCAAATAATCCTGA
gi|13 : CT-GGCTAAAATTGAG-AA----------TTC--GTACCGAT-GATACTCG-GGCTG---
gi|13 : ataactTGACTTG-GACTA-TTTGATATAAAATCAAATAACCCTGacttggactatttgatataaaatcaaataaccctgtttatctacaaaa
gi|14 : ataactctggctaaaattgagaattcgtaccgatgatactcgggcTAACGAATT-TTGGT--CAGGTAAAGA---AACC---AC-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATAGAATAG----------CCC--GTACCAAT-AAtttatctacaaaa
gi|15 : aA-ATA-AAATAAACACCT---CCAAAAATGAATTG-GACTA-TTT-ATATAAAATCAAATAATCC
gi|16 : acagtaaagtagatta--GTACCAAT-ATTACTCG-TGCTG---GAAAGCGGGGATTGAAGTT-CAATCG-AACAg
gi|2 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAACCATGGACAGGACTAAAGAG-TAGTACCGTCTTACTTT-GCATGAAGCTTGCACCAGCATGTAGCATCCCGACAC-TTT--GTT-TGGAAG-TGGATGTGGCCCCA---GTTTTTGTGACG-CTGTG-GACCCCACTTGCA--AAAGCA-ACACTTTTAACTACTT-----TTT-GGCT--TT-------CAC--AATACACAACT--------------------T-CCTCAATGGCAAGT-----GGGGGGAGACT-ACAGGTTTTGGAGCAGAAAAA--GTCA-TAACTTTCCGCGACGGACTCCTTAGTTCC---TGACCCCC--------AGTAAAATGCGGCAGGGTGGGTAATAATGAAATGAACTG----AT-TGAAGTGTTGATAGCT-GTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAACCT--AGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACAACTGGA----ATAGAAAA-TGAAA-GACAGCAGTAACTGTTGC-----ACAAAAT-------------AAGACCATGAAGAAT----------TG-GGTGGGTGGGTAA--AATTGTTGGC--CAAGTAAACA---TGTT---TT-A---GC-AAATAACTTCCGGTGT-------GCAGAAAATGAATAGTTCGTAATATTTC--GTACCAAT-ATTTCTCG-CGCTA---GAAAATGG
gi|3 : tttcCCTTCTCACCCTGTCTCTGCAGTGCTACCTGGTTTGAAATTTA---ACATT-TTA---------TAC-A--TAATCC--ACAT------TGCACCAGACTGTAGCATCCC--CTCACTGAAGTG-AG---G-TGGACGAGGTCCCAACCGGCCCCG----G-TGGTG-GACCTCACT------ATAGCAGATAACTGT--TTACTTGATAAATTA-ACTTGTTTAG-----ACTTAGT-C----CTGTAAAT------TG-CCACCTGCTTTAGGAGCAGGTGGGGGGGGGGGGGACACCCAGGTTTTGGAGCAGGAAACCTGTCATTCACATACCATTACCGACTCCCCAGTTCCCAGTGCCTCCCCCCTTTTAAATAACATGCGACAG
gi|4 : gcATCTGGA----AAAGAAAACTG--ACAACAGCAGTAA--GTTACACAGAA-AAAACAAACACGACAATTCAAAACAGAAAGAATGACAATAAGGTG-GATGGGTGGG---CAAA-T-TTAGTCCCAAGTGTAAA---AGCC---GTGT---G--A--------CTTGCTTCTGTT-GTTGGAAATTAAACAA----------GTC--GTACCGAT-ATAACTC
gi|4 : aAAATTGAG-AA----------TCC--GTACCGAT-GACTCTCG-GGCTGACTGTAAGTAG---TT--AGATGAAGT---------------------AAACACCC--TCCAAAATTAATTTG-GACTA-TTTGATATAAAATCAAATAATCCTAAtggctaaataaaatgtgtcaaaattgagaatccgtaccgatgactctcgggctgactgtaagtagttagatgaagtaaacaccctccaaaattaatttggactatttgatataaaatcaaataatcctaa
gi|5 : aatctggaaaagaaaactgacaacagcagtaagttacacagaaaaaacaaacacgacaattcaaaacagaaagaatgacaataaggtggatgggtgggcaaatttagtcccaagtgtaaaagccgtgtgacttgcttctgttgttggaaattaaacaagtcgtaccgatataactctggctaaataaaatgtgtca--------CTGGATTAGGCCGAGCAGAATACGAATAG----------CCCACGTACCAATCAATACTCGGTGCTG----AAAGCGGGTGGTGAAGCTGAA-TCGGAATAGGACA-ACA-AAA-AAACGCTTA--CCAAAATTAATTCG-GACTA--TTGATATAAAATCAAATAATCCTGA
gi|6 : CATGCACCAGTCTGTATAAT-----CTT-CTCAA-TGAAGGACGATGGATGT-GCCCTAGCCt
gi|7 : atacacaagtcaatatGAAATTGATTAG----------ATC--GTACCGAT-AATTCTCG-CACTccgctattacggatttatttgattttaacttgtgcagacttttagtcctgttaattccccctgcactagaagtagg
gi|7 : cggtgttgggGTAGAAATTGA-TAA----------CTC--GTACAAAT-GAGTCTCG-CACTA---CAAAGaaattcatatttgtagaaattgataactcgtacaaatgagtctcgcactacaaagtaagcgatataagccctatacccaaaactactgtg
gi|8 : cggtgttggggaaattgattagatcgtaccgataattctcgcactaaattcatattt----------CTC--GTACCAAT-A-TACTCG-TGCTG---GAAAGCGGGGATTGAAGTTG-AATCG-AATAGGACAGAC---AA-AAACGCTAG-TCCAAAATTTATTCG-GACT-ATTTGATATAAAATTAAATGATCCTGAtaagcgatataagccctatacccaaaactactgtg
gi|9 : TAACAA--T-TTGGT--CAGGTAAAAACCAAGCCCCAAC-TCGGGCTA--------CTGGTTTAGGCG-AGCAGAATTTCGATAG----------C-C--GTACCAATAAATACTCG--GCTG---GAAAGCGGGGG-TGAAGCTGAtt
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 1 1 222222 222 22 333 1111111111 111111 1 44444444 1 111111 11 22222 11 777777777777777777777777777777777777777777777 33333 1 11 1 2222 44444444 1 11 2222 1 1 222 1 3333333 11 2222 3333333 1 1 222 1 1 1 3333333 1 44444444444 1 11 1 1 2222 44444444 22222222222222222222222222 11 3333333333333 11 111 4444444444444444444444 1111111111 1111111 111 111
lowQualScore : 3 1 7 3 999999 000 00 222 1 1 3 8888888888 333333 8 1 6 3 0 55555555 0 999999 44 6 1 88 3 55555 44 888888888888888888888888888888888888888888888 6 33333 3 7 6 88 3 1 7 6666 88888888 7 5 22 88 4444 5 1 5 1 000 5 1111111 22 1 88 1 1 3333 2222222 1 5 22 1 5 111 1 5 1 1 33 5 5 3333333 5 1 33333333333 1 5 22 88 1 5 2 5 1 8888 00000000 6 55555555555555555555555555 1 55 7777777777777 0 1 66 8 11 1 444 7777777777777777777777 3 5 33 4444444444 0 44 1 6 2 99 666 0 6 7 5 5 8888888 444 5 888 3
lowQualScore : . . . . ...... ... .. ... . . . .......... ...... . . . . . ........ . ...... .. . . .. . ..... .. ............................................. . ..... . . . .. . . . .... ........ . . .. .. .... . . . . ... . ....... .. . .. . . .... ....... . . .. . . ... . . . . .. . . ....... . . ........... . . .. .. . . . . . .... ........ . .......................... . .. ............. . . .. . .. . ... ...................... . . .. .......... . .. . . . .. ... . . . . . ....... ... . ... .
lowQualScore : 3 0 3 3 777777 777 77 333 0 0 2 4444444444 000000 0 4 4 6 2 22222222 0 222222 22 5 0 55 2 00000 00 000000000000000000000000000000000000000000000 7 33333 3 3 7 33 3 0 3 3333 33333333 3 5 00 00 5555 5 0 5 0 555 5 5555555 00 0 00 0 0 0000 0000000 0 5 00 0 0 000 0 5 0 0 55 5 5 0000000 0 0 00000000000 0 0 00 55 0 0 5 0 0 3333 77777777 7 33333333333333333333333333 0 77 3333333333333 8 4 44 0 00 4 000 0000000000000000000000 2 7 88 6666666666 1 22 1 2 6 77 444 1 2 1 7 7 3333333 333 0 999 2
consensus : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTNAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCT--TTTAG----CAC--AATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGT-----GGGGGGAGACA-ACAGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
Reference ( family-2067 ) : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTNAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCT--TTTAG----CAC--AATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGT-----GGGGGGAGACA-ACAGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
gi|1 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAAGCATGGACATG-CAAAAG-GTTAGTGC-GCCTAACCTTAGCCTGACGCATGCACCAGACTGTAGCATCCCG-CCC-TT--AGTT-AGGACG-TGGATGTGA-CCCA---GATCTTGT--TGTCTGTG-GACCCCGCTTGCA--AA---AAACAACTTTAACTAC-T-----ATTAGGCT--TTTAGCCTACAC--AATACACAACAGTAGATGATACACGCCC-CCTGCCTTAATGGCAGGT-----GGGAGGAGACA-ACAGGTTTTGG-GCA-GAAAA--GTCA-TAACCTTCCGCGACGGACTCCCCAG-CCCCA--ACCCCCC--------AG-AAAATGCGACAGGG-AGATAACACAAAAAT--ACTATATAATATGAAATGCTGGTTGTTTGTTG---TAACC-TGA-------ACTAGCCAAGCTGAAACCTCTGGACATACCTCTATTCGAGGTTGCCTCTAA-------CTGTAAA-CCTAAAACATAAGCCCCAGGTTCA---TTTTACACAAATGCGAGATAAACAACGTCCCATTA-TCAC-TTG-------GTCCA-ATGGTCCT-----------ATTTCGTCT-GAGGCTGCCTTAAGTGCTC--TGCAGGCGGCCTGCATAAATGCATCTGAA-ACCTGGAATTGAAAGAAA------A-GACAGCAGTAACTGTTA--------------------------CAAAGTAC----AAT-ACAG-AAAGGGTGGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---AT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATCGAATAG----------CCC--GTACCAAT-ACTACTCG-TGCTG---GAAAACGGGGGTTGAAGCGGAAATCG-AATAGGACA-ACACAAA-AAACG-TTA-TCC-AAATTAATTCG-GACTAATTTGATAT---ATCAACTAATCCTGA
gi|10 : tg----------CTC--GTACCAAT-AATACTAG-TGCTT---GGAAGCGGGGATTGAAGTTG-AATCG-AATAGGACA-AC-------AACGCTCAGTCCAAAATTAATTCG-GACTAA-TTGAT-T-AAATTAATGGATCCTGA
gi|11 : ATGAACCTGCCTGTAGCATTCCC-TAT-CTGAAGTG-A---TG-TGGGCGAGGTCCCAACCGGCCCTG--------GTGTGACCTCACTATCATTATAGCAGATAACTGT--TTACTT-----
gi|12 : atccatCTCG-TGCTG---GAA-GCGGGGGTTGAAGCTGAA-TCG-AATAGGACA-ACA-AAA--AACGCTTA-TCCAAAATTAATTCGCGACT-ATTTGATATAAAATCAAATAATCCTGA
gi|13 : CT-GGCTAAAATTGAG-AA----------TTC--GTACCGAT-GATACTCG-GGCTG---
gi|13 : ataactTGACTTG-GACTA-TTTGATATAAAATCAAATAACCCTGacttggactatttgatataaaatcaaataaccctgtttatctacaaaa
gi|14 : ataactctggctaaaattgagaattcgtaccgatgatactcgggcTAACGAATT-TTGGT--CAGGTAAAGA---AACC---AC-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATAGAATAG----------CCC--GTACCAAT-AAtttatctacaaaa
gi|15 : aA-ATA-AAATAAACACCT---CCAAAAATGAATTG-GACTA-TTT-ATATAAAATCAAATAATCC
gi|16 : acagtaaagtagatta--GTACCAAT-ATTACTCG-TGCTG---GAAAGCGGGGATTGAAGTT-CAATCG-AACAg
gi|2 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAACCATGGACAGGACTAAAGAG-TAGTACCGTCTTACTTT-GCATGAAGCTTGCACCAGCATGTAGCATCCCGACAC-TTT--GTT-TGGAAG-TGGATGTGGCCCCA---GTTTTTGTGACG-CTGTG-GACCCCACTTGCA--AAAGCA-ACACTTTTAACTACTT-----TTT-GGCT--TT-------CAC--AATACACAACT--------------------T-CCTCAATGGCAAGT-----GGGGGGAGACT-ACAGGTTTTGGAGCAGAAAAA--GTCA-TAACTTTCCGCGACGGACTCCTTAGTTCC---TGACCCCC--------AGTAAAATGCGGCAGGGTGGGTAATAATGAAATGAACTG----AT-TGAAGTGTTGATAGCT-GTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAACCT--AGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACAACTGGA----ATAGAAAA-TGAAA-GACAGCAGTAACTGTTGC-----ACAAAAT-------------AAGACCATGAAGAAT----------TG-GGTGGGTGGGTAA--AATTGTTGGC--CAAGTAAACA---TGTT---TT-A---GC-AAATAACTTCCGGTGT-------GCAGAAAATGAATAGTTCGTAATATTTC--GTACCAAT-ATTTCTCG-CGCTA---GAAAATGG
gi|3 : tttcCCTTCTCACCCTGTCTCTGCAGTGCTACCTGGTTTGAAATTTA---ACATT-TTA---------TAC-A--TAATCC--ACAT------TGCACCAGACTGTAGCATCCC--CTCACTGAAGTG-AG---G-TGGACGAGGTCCCAACCGGCCCCG----G-TGGTG-GACCTCACT------ATAGCAGATAACTGT--TTACTTGATAAATTA-ACTTGTTTAG-----ACTTAGT-C----CTGTAAAT------TG-CCACCTGCTTTAGGAGCAGGTGGGGGGGGGGGGGACACCCAGGTTTTGGAGCAGGAAACCTGTCATTCACATACCATTACCGACTCCCCAGTTCCCAGTGCCTCCCCCCTTTTAAATAACATGCGACAG
gi|4 : gcATCTGGA----AAAGAAAACTG--ACAACAGCAGTAA--GTTACACAGAA-AAAACAAACACGACAATTCAAAACAGAAAGAATGACAATAAGGTG-GATGGGTGGG---CAAA-T-TTAGTCCCAAGTGTAAA---AGCC---GTGT---G--A--------CTTGCTTCTGTT-GTTGGAAATTAAACAA----------GTC--GTACCGAT-ATAACTC
gi|4 : aAAATTGAG-AA----------TCC--GTACCGAT-GACTCTCG-GGCTGACTGTAAGTAG---TT--AGATGAAGT---------------------AAACACCC--TCCAAAATTAATTTG-GACTA-TTTGATATAAAATCAAATAATCCTAAtggctaaataaaatgtgtcaaaattgagaatccgtaccgatgactctcgggctgactgtaagtagttagatgaagtaaacaccctccaaaattaatttggactatttgatataaaatcaaataatcctaa
gi|5 : aatctggaaaagaaaactgacaacagcagtaagttacacagaaaaaacaaacacgacaattcaaaacagaaagaatgacaataaggtggatgggtgggcaaatttagtcccaagtgtaaaagccgtgtgacttgcttctgttgttggaaattaaacaagtcgtaccgatataactctggctaaataaaatgtgtca--------CTGGATTAGGCCGAGCAGAATACGAATAG----------CCCACGTACCAATCAATACTCGGTGCTG----AAAGCGGGTGGTGAAGCTGAA-TCGGAATAGGACA-ACA-AAA-AAACGCTTA--CCAAAATTAATTCG-GACTA--TTGATATAAAATCAAATAATCCTGA
gi|6 : CATGCACCAGTCTGTATAAT-----CTT-CTCAA-TGAAGGACGATGGATGT-GCCCTAGCCt
gi|7 : atacacaagtcaatatGAAATTGATTAG----------ATC--GTACCGAT-AATTCTCG-CACTccgctattacggatttatttgattttaacttgtgcagacttttagtcctgttaattccccctgcactagaagtagg
gi|7 : cggtgttgggGTAGAAATTGA-TAA----------CTC--GTACAAAT-GAGTCTCG-CACTA---CAAAGaaattcatatttgtagaaattgataactcgtacaaatgagtctcgcactacaaagtaagcgatataagccctatacccaaaactactgtg
gi|8 : cggtgttggggaaattgattagatcgtaccgataattctcgcactaaattcatattt----------CTC--GTACCAAT-A-TACTCG-TGCTG---GAAAGCGGGGATTGAAGTTG-AATCG-AATAGGACAGAC---AA-AAACGCTAG-TCCAAAATTTATTCG-GACT-ATTTGATATAAAATTAAATGATCCTGAtaagcgatataagccctatacccaaaactactgtg
gi|9 : TAACAA--T-TTGGT--CAGGTAAAAACCAAGCCCCAAC-TCGGGCTA--------CTGGTTTAGGCG-AGCAGAATTTCGATAG----------C-C--GTACCAATAAATACTCG--GCTG---GAAAGCGGGGG-TGAAGCTGAtt
blockSeqs : T C T A AAGAG CGT T GAA A C T CTATCTGA AAGGAC A A T A TGACGCT T ATCATT TA G G AA T GATAA G TGTTTAGACTTAGTCCTGTAAATTGCCA G GGGGG C A G CT T T T CAGT CCCTTTTA T T AT GA . . A . A CCT T CTGCAAC TT C . A G . GTCAAAC G T CT T . AAG A . T T TA T A TCTAATT C T ACATTGTTCCC A C GT TT T . C C A . ATGAAA C CACAGAAAAAACAAACACGACAATT C TG GACAATAAGGTG G AT G CC G CCA TTAGCAAATAACTT A G AT TTCGTAATAT AC A C A GT ACT A A G G AAAATA AGT C AA A
blockSeqs : . T . . . A . . T C C GACACTTT TGGAA . T C A GTG . TGCA AA G T . T . A TTCACAATACACAACT . . . A G . . A T T . T T . ACTGAC . CACAAAAT A GA TG A AT . . C . CCAACTCGGGCTA C . AT . . G A A T . C A . . AAAAA AT . AT A
blockSeqs : A A C CTCACTGA AT . A T G . . . TA . G . T . A A . . A . ACTGCA A . AC . . A . A T . A G . . AAAA GT . AT A
blockSeqs : . T . CTTCTCA AG . T C . . . . . A . GTGTGA A . AT . . A . T G . A A . . AAA T . AT A
blockSeqs : . . TT . . A . T T . A . . . A A . AT A
blockSeqs : . AT . . G . T C . . . . . . . . AT A
blockSeqs : G . . G . A G . . . A .
blockSeqs : G . . A . A C .
blockSeqs : T . . G . A C .
blockSeqs : . . A . A T .
blockSeqs : . . A . A .
blockSeqs : . A . .
blockSeqCons : CTCACTGA** AA**** AAAAA** AT*
originalCons : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCG-CNC-CTNAAGTG-AGGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCT--TTTAG----CAC--AATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGT-----GGGGGGAGACA-ACAGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACTAATTTGATATAAAATCAAATAATCCTGA
finalCons : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCCTCACTGA--AGTGAA----G-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCT--TTTAG----CAC--AATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGT-----GGGGGGAGACA-ACAGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACAAAAA--AACGCTTA-TCCAAAATTAATTCG-GACTAT-TTGATATAAAATCAAATAATCCTGA
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 1 1 222222 222 22 333 2222 1 44444444 1 111111 11 22222 11 777777777777777777777777777777777777777777777 33333 1 11 1 2222 44444444 1 11 2222 1 1 222 1 3333333 11 2222 3333333 1 1 222 1 1 1 3333333 1 44444444444 1 11 1 1 2222 44444444 22222222222222222222222222 11 3333333333333 11 111 4444444444444444444444 1111111111 1 11 111
lowQualScore : 3 1 7 3 999999 000 00 222 1 1 1 666 8888 8 8 1 6 3 0 55555555 0 999999 44 6 1 88 3 55555 44 888888888888888888888888888888888888888888888 6 33333 3 7 6 88 3 1 7 6666 88888888 7 5 22 88 4444 5 1 5 1 000 5 1111111 22 1 88 1 1 3333 2222222 1 5 22 1 5 111 1 5 1 1 33 5 5 3333333 5 1 33333333333 1 5 22 88 1 5 2 5 1 8888 00000000 6 55555555555555555555555555 1 55 7777777777777 0 1 66 8 11 1 444 7777777777777777777777 3 5 33 4444444444 0 44 1 6 2 99 666 0 0 4 5 5 44 5 444 5 5 0 3
lowQualScore : . . . . ...... ... .. ... . . . ... .... . . . . . . ........ . ...... .. . . .. . ..... .. ............................................. . ..... . . . .. . . . .... ........ . . .. .. .... . . . . ... . ....... .. . .. . . .... ....... . . .. . . ... . . . . .. . . ....... . . ........... . . .. .. . . . . . .... ........ . .......................... . .. ............. . . .. . .. . ... ...................... . . .. .......... . .. . . . .. ... . . . . . .. . ... . . . .
lowQualScore : 3 0 3 3 777777 777 77 333 0 0 0 888 8888 8 0 4 4 6 2 22222222 0 222222 22 5 0 55 2 00000 00 000000000000000000000000000000000000000000000 7 33333 3 3 7 33 3 0 3 3333 33333333 3 5 00 00 5555 5 0 5 0 555 5 5555555 00 0 00 0 0 0000 0000000 0 5 00 0 0 000 0 5 0 0 55 5 5 0000000 0 0 00000000000 0 0 00 55 0 0 5 0 0 3333 77777777 7 33333333333333333333333333 0 77 3333333333333 8 4 44 0 00 4 000 0000000000000000000000 2 7 88 6666666666 1 22 1 2 6 77 444 1 1 1 7 7 11 7 333 0 0 4 2
consensus : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCCTCACTGAAGTT-GGACG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCT--TTTAG----CAC--AATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGT-----GGGGGGAGACA-ACAGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACT-ATTTGATATAAAATCAAATAATCCTGA
Reference ( family-2067 ) : NNCCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAANCATGGACATG-CTAAAG-G-TAGTAC-GCCTAACCTT-GCATGA-GCATGCACCAGNCTGTAGCATCCCCTCACTGAAGT---GAAG-TGGACGTGGCCCCAACCGGCCCTGT--CG-CTGTG-GACCCCACTTGCA--ANAGCAGACAACTNTAACTACTT-----ATTAGGCT--TTTAG----CAC--AATACACAACTGTAGAT------CG-CC-CCTGCCTTAATGGCAGGT-----GGGGGGAGACA-ACAGGTTTTGGAGCAGGAAAA--GTCA-TAACNTTCCGCGACGGACTCCCCAGTTCCCA-TGCCCCCC--------AGTAAAATGCGACAGGGTGGGTAACANNGAAATGAACTGTATAATATGAAGTGCTGGTNGCTTGTNGCCTTAACCTTGGCTGCAACACTAGCCNNGCTGNAACCTCTGGGCATACNTNTACTCGAGGCTGCCTCTAGGTCAAACCTGNAAATCCTAANNCNTAAGCCCCGGGTCCAAAGTCCNACACANACGCGAGATNANCGACGTCCCATTATTCACATTGTCTAATTGTCCACATNGTCCTACATTGTTCCCATTNCGTCTCGAGGCTGCCTNNAGCGCTCTTTGCNGGCGGCCTGCATGAATGCATCCGAACANCTGGA----AAAGAAAA-TG--A-GACAGCAGTAACTGTTAC-----A-AAAAC-------------CAAANCACGAAGAAT-ACAG-AAGGTG-GGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---GT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATTGAATAG----------CTC--GTACCGAT-AATACTCG-CGCTG---GAAAGCGGGGGTTGAAGCTGAAATCG-AATAGGACA-ACA-AAA-AAACGCTTA-TCCAAAATTAATTCG-GACT-ATTTGATATAAAATCAAATAATCCTGA
gi|1 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAAGCATGGACATG-CAAAAG-GTTAGTGC-GCCTAACCTTAGCCTGACGCATGCACCAGACTGTAGCATCCCGCCCTT--AGTTAGGACG-TGGATGTGA-CCCA---GATCTTGT--TGTCTGTG-GACCCCGCTTGCA--AA---AAACAACTTTAACTAC-T-----ATTAGGCT--TTTAGCCTACAC--AATACACAACAGTAGATGATACACGCCC-CCTGCCTTAATGGCAGGT-----GGGAGGAGACA-ACAGGTTTTGG-GCA-GAAAA--GTCA-TAACCTTCCGCGACGGACTCCCCAG-CCCCA--ACCCCCC--------AG-AAAATGCGACAGGG-AGATAACACAAAAAT--ACTATATAATATGAAATGCTGGTTGTTTGTTG---TAACC-TGA-------ACTAGCCAAGCTGAAACCTCTGGACATACCTCTATTCGAGGTTGCCTCTAA-------CTGTAAA-CCTAAAACATAAGCCCCAGGTTCA---TTTTACACAAATGCGAGATAAACAACGTCCCATTA-TCAC-TTG-------GTCCA-ATGGTCCT-----------ATTTCGTCT-GAGGCTGCCTTAAGTGCTC--TGCAGGCGGCCTGCATAAATGCATCTGAA-ACCTGGAATTGAAAGAAA------A-GACAGCAGTAACTGTTA--------------------------CAAAGTAC----AAT-ACAG-AAAGGGTGGTGGGTGGGTAACGAATT-TTGGT--CAGGTAAAGA---AGCC---AT-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATCGAATAG----------CCC--GTACCAAT-ACTACTCG-TGCTG---GAAAACGGGGGTTGAAGCGGAAATCG-AATAGGACA-ACACAAA-AAACG-TTA-TCC-AAATTAATTCG-GACTAATTTGATAT---ATCAACTAATCCTGA
gi|10 : tg----------CTC--GTACCAAT-AATACTAG-TGCTT---GGAAGCGGGGATTGAAGTTG-AATCG-AATAGGACA-AC-------AACGCTCAGTCCAAAATTAATTCG-GACT-AATTGAT-T-AAATTAATGGATCCTGA
gi|11 : ATGAACCTGCCTGTAGCATTCCCTATCTGAAGT---GATG-TGGGCGAGGTCCCAACCGGCCCTG--------GTGTGACCTCACTATCATTATAGCAGATAACTGT--TTACTT-----
gi|12 : atccatCTCG-TGCTG---GAA-GCGGGGGTTGAAGCTGAA-TCG-AATAGGACA-AC--AAA-AAACGCTTA-TCCAAAATTAATTCGCGACT-ATTTGATATAAAATCAAATAATCCTGA
gi|13 : CT-GGCTAAAATTGAG-AA----------TTC--GTACCGAT-GATACTCG-GGCTG---
gi|13 : ataactTGACTTG-GACT-ATTTGATATAAAATCAAATAACCCTGacttggactatttgatataaaatcaaataaccctgtttatctacaaaa
gi|14 : ataactctggctaaaattgagaattcgtaccgatgatactcgggcTAACGAATT-TTGGT--CAGGTAAAGA---AACC---AC-T---GC-A--------CTGGTTTAGGCT-AGCAGAAATAGAATAG----------CCC--GTACCAAT-AAtttatctacaaaa
gi|15 : aA-ATA-AAATAAACACCT---CCAAAAATGAATTG-GACT-ATTT-ATATAAAATCAAATAATCC
gi|16 : acagtaaagtagatta--GTACCAAT-ATTACTCG-TGCTG---GAAAGCGGGGATTGAAGTT-CAATCG-AACAg
gi|2 : CCTTCTCGCCC-GTCTCCTAAGTGCTACCTGGTTTGAAAACCATGGACAGGACTAAAGAG-TAGTACCGTCTTACTTT-GCATGAAGCTTGCACCAGCATGTAGCATCCCGACACTTT-GTTTGGAAG-TGGATGTGGCCCCA---GTTTTTGTGACG-CTGTG-GACCCCACTTGCA--AAAGCA-ACACTTTTAACTACTT-----TTT-GGCT--TT-------CAC--AATACACAACT--------------------T-CCTCAATGGCAAGT-----GGGGGGAGACT-ACAGGTTTTGGAGCAGAAAAA--GTCA-TAACTTTCCGCGACGGACTCCTTAGTTCC---TGACCCCC--------AGTAAAATGCGGCAGGGTGGGTAATAATGAAATGAACTG----AT-TGAAGTGTTGATAGCT-GTAGCCTTAACCTTGGCTGCAACACTAGCCTTACTGCAACCT--AGGCATACATGTACTC----CTATCTCTAGGTCAAACCTGGAAATCCTAACTCTTAA-CCCCGGGTCCAAAGTCCAAC-TATACGCGAGATTATAGATGTCCCATTATTCACATTGTCTAATTGTTCACATTGTCCTACATTGTTCCCATTACATCTCAAGGCTACCTGTAGCGCTCTTTGCTGA-GGCCTGCATGAATGCATCCCAACAACTGGA----ATAGAAAA-TGAAA-GACAGCAGTAACTGTTGC-----ACAAAAT-------------AAGACCATGAAGAAT----------TG-GGTGGGTGGGTAA--AATTGTTGGC--CAAGTAAACA---TGTT---TT-A---GC-AAATAACTTCCGGTGT-------GCAGAAAATGAATAGTTCGTAATATTTC--GTACCAAT-ATTTCTCG-CGCTA---GAAAATGG
gi|3 : tttcCCTTCTCACCCTGTCTCTGCAGTGCTACCTGGTTTGAAATTTA---ACATT-TTA---------TAC-A--TAATCC--ACAT------TGCACCAGACTGTAGCATCCCCTCACTGAAGT---GAGG-TGGACGAGGTCCCAACCGGCCCCG----G-TGGTG-GACCTCACT------ATAGCAGATAACTGT--TTACTTGATAAATTA-ACTTGTTTAG-----ACTTAGT-C----CTGTAAAT------TG-CCACCTGCTTTAGGAGCAGGTGGGGGGGGGGGGGACACCCAGGTTTTGGAGCAGGAAACCTGTCATTCACATACCATTACCGACTCCCCAGTTCCCAGTGCCTCCCCCCTTTTAAATAACATGCGACAG
gi|4 : gcATCTGGA----AAAGAAAACTG--ACAACAGCAGTAA--GTTACACAGAA-AAAACAAACACGACAATTCAAAACAGAAAGAATGACAATAAGGTG-GATGGGTGGG---CAAA-T-TTAGTCCCAAGTGTAAA---AGCC---GTGT---G--A--------CTTGCTTCTGTT-GTTGGAAATTAAACAA----------GTC--GTACCGAT-ATAACTC
gi|4 : aAAATTGAG-AA----------TCC--GTACCGAT-GACTCTCG-GGCTGACTGTAAGTAG---TT--AGATGAAGT---------------------AAACACCC--TCCAAAATTAATTTG-GACT-ATTTGATATAAAATCAAATAATCCTAAtggctaaataaaatgtgtcaaaattgagaatccgtaccgatgactctcgggctgactgtaagtagttagatgaagtaaacaccctccaaaattaatttggactatttgatataaaatcaaataatcctaa
gi|5 : aatctggaaaagaaaactgacaacagcagtaagttacacagaaaaaacaaacacgacaattcaaaacagaaagaatgacaataaggtggatgggtgggcaaatttagtcccaagtgtaaaagccgtgtgacttgcttctgttgttggaaattaaacaagtcgtaccgatataactctggctaaataaaatgtgtca--------CTGGATTAGGCCGAGCAGAATACGAATAG----------CCCACGTACCAATCAATACTCGGTGCTG----AAAGCGGGTGGTGAAGCTGAA-TCGGAATAGGACA-ACA-AAA-AAACGCTTA--CCAAAATTAATTCG-GACT-A-TTGATATAAAATCAAATAATCCTGA
gi|6 : CATGCACCAGTCTGTATAATCTTCTCAATGAAG----GACGATGGATGT-GCCCTAGCCt
gi|7 : atacacaagtcaatatGAAATTGATTAG----------ATC--GTACCGAT-AATTCTCG-CACTccgctattacggatttatttgattttaacttgtgcagacttttagtcctgttaattccccctgcactagaagtagg
gi|7 : cggtgttgggGTAGAAATTGA-TAA----------CTC--GTACAAAT-GAGTCTCG-CACTA---CAAAGaaattcatatttgtagaaattgataactcgtacaaatgagtctcgcactacaaagtaagcgatataagccctatacccaaaactactgtg
gi|8 : cggtgttggggaaattgattagatcgtaccgataattctcgcactaaattcatattt----------CTC--GTACCAAT-A-TACTCG-TGCTG---GAAAGCGGGGATTGAAGTTGAA-TCG-AATAGGACAGACA-AAA-A--CGCTAG-TCCAAAATTTATTCG-GACT-ATTTGATATAAAATTAAATGATCCTGAtaagcgatataagccctatacccaaaactactgtg
gi|9 : TAACAA--T-TTGGT--CAGGTAAAAACCAAGCCCCAAC-TCGGGCTA--------CTGGTTTAGGCG-AGCAGAATTTCGATAG----------C-C--GTACCAATAAATACTCG--GCTG---GAAAGCGGGGG-TGAAGCTGAtt