lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 3333 11 22222222 444444444444 2222222222222 333 1 8888888888888888 22 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1111 222222222 1 11 11 2222222
lowQualScore : 3 3 5 5555 11 4 99999999 3 111111111111 1111111111111 555 0 7777777777777777 2 3 22 7 6 3 6 1 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 3333 3 333333333 9 4 3 11 4 5 00 2 1 5 2 66 3 22 1111111 8 6
lowQualScore : . . . .... .. . ........ . ............ ............. ... . ................ . . .. . . . . . ..................................................................................................................................................... . .... . ......... . . . .. . . .. . . . . .. . .. ....... . .
lowQualScore : 2 2 0 0000 00 8 00000000 0 000000000000 2222222222222 000 0 8888888888888888 5 5 00 5 7 5 7 7 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 5555 6 111111111 6 9 0 66 4 2 66 2 1 0 2 99 6 77 7777777 0 0
consensus : TATTAATCTAAAGCACACTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCATA-ACAT-CTGCAG------TC--AATCATTTTCTGGATTCGT-CAGCGTTTTATTT-GGTT-TTGTG--T---GGT--TN-----AACAA-A--AC---CCAA--------GTTG-CC----GTGTTT----A-AACAA----G-T------GCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAAGAACATT--GAGCCCGATCGC--AAAACGTAGAATTTATCTTCGTATTTTTT--CTGCGTCATGGTGACCC-TTCGGGTG--ATGATTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
Reference ( gi|4 ) : TATTAATTTAAAGCACATTGAATTTTGATCTACACTCG--TTACTGAAA--GACTTTTTG--------GTGCCACC------------ATTAT--T--TTACACCGAGACCAT---CAT-CTGCAG------TTCTACTCACTTTCTGGATTCAT-AAGCATTCTATTT-GGTT-TTGTGTTT---GGT--TC-----AACAACA--AC---CCAA--------GTTG-TC----GTGTTT----A-AACAA----A-T------GCAACTGGTTC------TGT--GCTTTTATTC---TT-ATATA--AAGTAGTTCCAGCCTCCACCTGGGAAAGAACACT--GAACCTGATTGT--AATATGAAGAATTTATCTTCGTACTTTTT--CTGCGTCATGGTGACCC-TTCAGGTG--ATGATTTTGG-AGGTA-------AAAAGTA-TTCTTTATG
gi|1 : TAGTAATC-AAAGAACATTTAAATTTAATCTA-ATCTA--TAACTGAAG--AACCTTTAG--------GTGCCACCTGTCAGACCACTATTAT--T--TT-TATTGAGACCGT---CAT-CTGCAG----------AATCATTCTCTGGATTCGT-CAGTGTTTTATTT-GGTT-TCGTG-----------AA-----AACAA-A--AT---TCAAC-------GATG-TCCGAAGTGTTT------AACAA----G-T------GCAAATGGTTCTCTCAATCT--GCCTTTATCT---TT-ATATT--AACTGGT-------TCCACCCAGGAAAGAACTTT--GGGTCCAATCACAAAATATAGAGGAT--------G-ACTCTT-------------------C-TTCAAGTG--ATGATTTTGG-GAGTA-------AAAGGTA-TTTTTTATG
gi|5 : acagtatttttgaactttttgagaagcaagggtcataaggatttctcgggggctgaattttcagggcaattttttttgggggggggggggtcacattttttTATTAATTTAAAGCACACTTACTTCTGATCTACACT-G--TTACCAAAG--GACGTTTTG--------ATGCTGCC------------ATTATTAT--TTATGTCCTGACCAT---CAT-CTGTAG------TCGTA------TTCTGGATTTGT-CAGCGTTTTATTT-GG-T-TTGTGTTT---GGT--TTTGTAAAACAA-A--AC---TCAA--------cataatt
gi|9 : aattaattatcattcagtgtttttaaactttttgagttgtaaaggtcattatgattctctaaggctgaattctgggggtcaaaattttgtttttgagggtcaagtgatctaaaTATTAATCTAAAGCACACTTAATTTTGATCTACACT-GTTTTAATAAAAATGATCTTTTT--------GTCCCGCC------------Acaatgtccgacatcgccatggtatttgcatggaacagtgtaactg
gi|10 : aattacagtgttgttgacctttttgagtcaccattgggtcattatgactctcttagatcaaattctggggtataaaattttttttgagggtcaccacattttaatTTTAA--CACATGTAATTTTGATCTGCACT-G--TTACTGAatt
gi|3 : attagtggttttttggtttttttgtaactttttagagtagcaagggcctttatgacttgggggggggggattctgggggttcataaattttgtttgagggtaacacatTTTGATCTACATT-G--TTACTGAAG--GACCTTTTG--------GTACCGCC------------ATTAT--TATTTACGTCAAGACCATAAATAT-CTGCAG----------AATCATTTTGGGGATTCGT-CAACATTTTATTT-GGTT-T-----------GT--AA-----AACCAAA--AT---TCAACAAT----GTTG-CC----ATGTTT----A-AACAACTGAG-T------GCAACTGGTTC------TCTCTGTCTTTATCA---TT-ATATATAAACTGGTTCCA-------TCTGTGAAAGAACAATTGGAATCAG-TTGC--AAAATGCAAAATTTATCTTTGTATTTTAT--TTTTGTCATAGTGACCC-TTCAGGTG--ATGTTTCTGG-GAGGA-------AAAAGTA-TTTTTTATGgtgttttg
gi|2 : caG--TTACTGAGA--GACTTTTTGCACATTTAGTGCTGCT------------GTTAT--T--T-ACAAAGAAACTATATACATTCTACAGGATTGTTTC--CTCAATTC----ATTCAT-TTACATTTTAATT-GGAT-TTGTAAATCAAAAT--TT-----AACAACA--------------------TTG-CC----ATGTTA----A-AACAA----A-TTAAAGTGCAACTGATTC------TTT--GTTTATACTCGTTTT-ACATG--TATTATTAACAG-------------ATGAACATT--GAGCCAGATCAA--AAAATGTACAATTTATTGTAATATTTTTTTTCTACATTGTGGTGACCC-CTCGGGTGACATG-TTTTAG-GGGTAAAAACTTAAAAGTA-TTTTTTATtataaattaagcaacaatttgtgctcataaacactgaattatacatatgatttttaat
gi|6 : tgagccagcactgccaTTTCTGGAACAGT-CAGCATTAAATTTTGGTT-TTGTGTTT---GGTATTC-----AACAACGCGACATACCAC--------GTCA-CC----ATGTTT----------------------------------C------TCT--GCACTTATTC---TT-ACATA--AACTGGTTCTA-------CCCAAGAAAGAACACT--GATCCCATTCAA--AATACCTAGAATT-ATCTTCGTGATTTTT--CTGCATCATGGTGACCC-TTTGGGTG--ATGATTTTGG-GGGTA-------AAGAGTATTTTTTTATGacgtatattatgtaagatttgcattagcaggaacatagatttatatctattttaatt
gi|11 : tTTTCTGGATTTGTTCAGTGTTTCATTT-TGTTATTGT-------------------AAAAAGA--AA---CCAATGTATGACGTGG-CC----ATGTTTTATTA-AAGAA----GGT------GCAAGTGGTTC-------------------------T-ATATA--AACT-GTTTCA------ACCCAGGAAAGAACAA---AAGCCTTATCGC--AAcat
gi|8 : t---CTAA--------ATTAATC----ATATTT----A-CACAA----A------------CTGGCTC------TCT--GCTTTTATTC---T-------------GGTTCCG-------CCTGGGAAA---CATT--GAACCCAAACGC--AAAATGTA-AATCTATCTTTGTATTTTTTT-CTGCATCATTGTGACCCTTTCGGGTG--ATGTTTTTGGTGGGTA-------AAAAGTaacataa
gi|7 : TG-TA----GTACTT----AGAATCA----C-T------GAAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCTA-------CTTGAAAAAGATGATA--GAGCCCAATAAC--AAAACACAGAATTTATCTTCATATTTTTT--CTGCATCATGGTAAGCC-TT-GGGTG--ATGATTTTGG-GGGTA-------TAAAGTA-ATTTTAATGttgggacggggggtgccataaattacacagagatttgtattaa
gi|14 : aTTC---TTTATATA--AACTGGTTCCA-------CCTGGGAAAGAACATT--GAGCCCGATCGA--AAAATGTAGAATTTATCTTTGTATTTTTT--tgtaaattatgcagagatttgcataaacagaaacactga
gi|16 : TCTTTATGTTTTTG--CTACGCCATGGTGACTC-TTTAGGTG--ATGATTTt
gi|15 : TTTATGTTTTTT--CTACGCCATGGTGACTC-TTTAGGTG--ATAATTTT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ACAGTTTTTTGAACTTATTGAGTTGCAAGGGTCATTATGGCTCTCTGGGGCTGAATTCTGGGGGTCAAAAATGTTCTTTGAGGGTCACACTATTTGAATATTAATTTAAAGC
Unaligned ( gi|13 ): TACAGTGTTTTTAATTTAATCTTTATAGTCAATATAACTCTGGGGCTGAATTCTGATGGTAAAATGTTTTGGGGGATCACACATTTTAAATATTTAAGGCA
Alignments
lowQualScore : 22222222 333333333333 11111 4444 5555 1 111 7777777777777777 55555555 11111 111111 33333333 111111 1111111 1111111
lowQualScore : 3 5 77 99 44444444 444444444444 33333 11 1111 8 4444 0 1 000 5 5 55 0000000000000000 5 5 5 33 00000000 33333 555555 66666666 444444 1 66 2 777 4 66 4444444 1 4 4 1 0 0 1 0 3 66666 4 3 4 3 55 55 99999 4 4444444 5
lowQualScore : . . .. .. ........ ............ ..... .. .... . .... . . ... . . .. ................ . . . .. ........ ..... ...... ........ ...... . .. . ... . .. ....... . . . . . . . . . ..... . . . . .. .. ..... . ....... .
lowQualScore : 2 7 99 22 22222222 222222222222 00000 66 8888 0 4444 6 4 000 7 7 99 1111111111111111 7 7 7 11 77777777 66666 333333 66666666 444444 4 99 2 888 4 11 4444444 7 4 4 7 1 7 4 1 0 11111 0 7 0 9 55 55 66666 4 4444444 0
consensus : TATTAATCTAAAGCACATTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCATA-A-CAT-CTGCAG----AATCGTTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTT-T-TGTGT--GGT--T-----AAA-C-AA-AACTCAAC-------GTTGCC----GTGTTT----AAACAA------G-TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAA-GAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTA--T--TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
Reference ( family-2056 ) : TATTAATCTAAAGCACACTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCATA-A-CAT-CTGCAGTC--AATCATTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTT-T-TGTGT--GGT--T-----NAA-C-AA-AACCCAA--------GTTGCC----GTGTTT----AAACAA------G-TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAA-GAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTA--T--TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
gi|1 : TAGTAATC-AAAGAACATTTAAATTTAATCTAATCT-A--TAACTGAAG--AACCTTTAG--------GTGCCACCTGTCAGACCACTATTAT--T--TT-TATTGAGACCGT----CAT-CTGCAG----AATCATTCTCTGGATTCGT-CA---GTGTTTTATTT-GGTT-T-CGTG--------A-----AAA-C-AA-AATTCAAC-------GATGTCCGAAGTGTTT-----AACAA------G-TGCAAATGGTTCTCTCAATCT--GCCTTTATCT---TT-ATATT--AACTGGTTCCA-------CCCAGGAAA-GAACT-TTGGGTCCAATCACAAAATATAGA----------GGA--TGACTCTT-CT---TCA-AGTG-----------------ATGA----TTTTGG-GAGTA-------AAAGGTA-TTTTTTATG
gi|10 : acagtatttttgaactttttgagaagcaagggtcataaggatttctcgggggctgaattttcagggcaattttttttgggggggggggggtcacattttttAACACATGTAATTTTGATCTGCACT-G--TTACTGAcataatt
gi|11 : attagtggttttttggtttttttgtaactttttagagtagcaagggcctttatgacttgggggggggggattctgggggttcataaattttgtttgagggtaacacattttTTTTCTGGATTTGTTCA---GTGTTTCATTT-TGTTAT-TGT---------------AAA-A-AG-AAACCAATGTATGACGTGGCC----ATGTTTTATTAAAGAA------GGTGCAAGTGGTTC------T--------------------ATATA--AACTGTTTCAA-------CCCAGGAAA-GAACA--AAAGCCTTATCGCAAAACATAgtgttttg
gi|12 : GTCATTATGGCTC-TCTGGGGCTG--A--A----TTCTGG-GGGTC-------AAAAATG-TTCTTTa
gi|14 : acagttttttgaacttattgagttgcaaggTTC---TTTATATA--AACTGGTTCCA-------CCTGGGAAA-GAACA-TTGAGCCCGATCGAAAAATGTAGAATTTATCTTTGTA--T--TTTTT-gagggtcacactatttgaatattaatttaaagc
gi|15 : TTTATG--T--TTTTT-CTACGCCATGGTGACTC-TTTAGG--TG--ATAATTTTTTTTAT-GGGTA-------AA--------TTTTATGt
gi|16 : TCTTTATG--T--TTTTG-CTACGCCATGGTGACTC-TTTAGG--TG--ATGA----TTTc
gi|2 : -G--TTACTGAGA--GACTTTTTGCACATTTAGTGCTGCT------------GTTAT--T--T-ACAAAGAAACTATATA-CATTCTACAG----GATTGTTTCCTCAATTCATTCATTTACATTTTAATT-GGAT-T-TGT---------------AAATC-AA-AATTTAACAAC----ATTGCC----ATGTTA----AAACAAATTAAAG-TGCAACTGATTC------TTT--GTTTATACTCGTTTT-ACATG--TATTA--TTAA-------C-----AGATGAACA-TTGAGCCAGATCAAAAAATGTACAATTTATTGTAATATTT--TTTTT-CTACATTGTGGTGACCC-CTCGGG--TGACATG-----TTTTAG-GGGTAAAAACTTAAAAGTA-TTTTTTAT
gi|3 : tgagccagcactgccaTTTGATCTACATT-G--TTACTGAAG--GACCTTTTG--------GTACCGCC------------ATTAT--TATTTACGTCAAGACCATA-AATAT-CTGCAG----AATCATTTTGGGGATTCGT-CA---ACATTTTATTT-GGTT-T---------GT--A-----AAA-CCAA-AATTCAACAAT----GTTGCC----ATGTTT----AAACAACTGA--G-TGCAACTGGTTC------TCTCTGTCTTTATCA---TT-ATATATAAACTGGTTCCA-------TCTGTGAAA-GAACAATTGGAATCAGTTGCAAAATGCAAAATTTATCTTTGTA--T--TTTAT-TTTTGTCATAGTGACCC-TTCAGG--TG--ATGT----TTCTGG-GAGGA-------AAAAGTA-TTTTTTATGacgtatattatgtaagatttgcattagcaggaacatagatttatatctattttaatt
gi|4 : caTATTAATTTAAAGCACATTGAATTTTGATCTACACTCG--TTACTGAAA--GACTTTTTG--------GTGCCACC------------ATTAT--T--TTACACCGAGACCAT----CAT-CTGCAGTTCTACTCACTTTCTGGATTCAT-AA---GCATTCTATTT-GGTT-T-TGTGTTTGGT--T-----CAA-C-AACAACCCAA--------GTTGTC----GTGTTT----AAACAA------A-TGCAACTGGTTC------TGT--GCTTTTATTC---TT-ATATA--AAGTAGTTCCAGCCTCCACCTGGGAAA-GAACA-CTGAACCTGATTGTAATATGAAGAATTTATCTTCGTA--C--TTTTT-CTGCGTCATGGTGACCC-TTCAGG--TG--ATGA----TTTTGG-AGGTA-------AAAAGTA-TTCTTTATGtataaattaagcaacaatttgtgctcataaacactgaattatacatatgatttttaat
gi|5 : TATTAATTTAAAGCACACTTACTTCTGATCTACACT-G--TTACCAAAG--GACGTTTTG--------ATGCTGCC------------ATTATTAT--TTATGTCCTGACCAT----CAT-CTGTAG------TCGTATTCTGGATTTGT-CA---GCGTTTTATTT-GGTT-TGTGTTT--GGT--TTTGTAAAA-C-AA-AACTCAA--------
gi|6 : aattaattatcattcagtgtttttaaactttttgagttgtaaaggtcattatgattctctaaggctgaattctgggggtcaaaattttgtttttgagggtcaagtgatctaaaTTTTCTGGAACAGT-CA---GCATTAAATTTTGGTT-T-TGTGTTTGGTATT-----CAA-C-AA---CGCGA--------CATACC----ACGTC-------AC------------CA--TGTTTC------TCT--GCACTTATTC---TT-ACATA--AACTGGTTCTA-------CCCAAGAAA-GAACA-CTGATCCCATTCAAAATACCTAGAATT-ATCTTCGTG--A--TTTTT-CTGCATCATGGTGACCC-TTTGGG--TG--ATGA----TTTTGG-GGGTA-------AAGAGTATTTTTTTATGcaatgtccgacatcgccatggtatttgcatggaacagtgtaactg
gi|7 : -TGAAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCTA-------CTTGAAAAA-GATGA-TAGAGCCCAATAACAAAACACAGAATTTATCTTCATA--T--TTTTT-CTGCATCATGGTAAGCC-TT-GGG--TG--ATGA----TTTTGG-GGGTA-------TAAAGTA-ATTTTAATGcat
gi|8 : atgtagtacttagaatcacC----ATATTT----ACACAA------------ACTGGCTC------TCT--GCTTTTATTC---T-------------GGTTCCG-------CCTGGGAAA----CA-TTGAACCCAAACGCAAAATGTA-AATCTATCTTTGTA--T--TTTTTTCTGCATCATTGTGACCCTTTCGGG--TG--ATGT----TTTTGGTGGGTA-------AAAAGTtgtaaattatgcagagatttgcataaacagaaacactga
gi|9 : ctaaattaatTATTAATCTAAAGCACACTTAATTTTGATCTACACT-GTTTTAATAAAAATGATCTTTTT--------GTCCCGCC------------Attgggacggggggtgccataaattacacagagatttgtattaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTGTTTTTAATTTAATCTTTATAGTCAATATAACTCTGGGGCTGAATTCTGATGGTAAAATGTTTTGGGGGATCACACATTTTAAATATTTAAGGCA
Alignments
lowQualScore : 22222222 333333333333 11111 4444 222222 1 111 666666666666666 1111 22222222222 1111 111111 33333333 111111 1111111 1111111
lowQualScore : 3 5 77 99 44444444 444444444444 33333 11 1111 8 111111 1 000 5 5 55 777777777777777 5 5 5 3333 55555555555 1 5 0000 555555 66666666 444444 1 66 2 777 4 66 4444444 1 1 4 1 0 0 1 0 3 66666 4 3 4 3 55 55 99999 4 4444444 5
lowQualScore : . . .. .. ........ ............ ..... .. .... . ...... . ... . . .. ............... . . . .... ........... . . .... ...... ........ ...... . .. . ... . .. ....... . . . . . . . . . ..... . . . . .. .. ..... . ....... .
lowQualScore : 2 7 99 22 22222222 222222222222 00000 66 8888 0 444444 4 000 7 7 99 999999999999999 7 7 7 6666 77777777777 4 7 6666 333333 66666666 444444 4 99 2 888 4 11 4444444 7 9 4 7 1 7 4 1 0 11111 0 7 0 9 55 55 66666 4 4444444 0
consensus : TATTAATCTAAAGCACATTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCATA-A-CAT-CTGCAG----AATCGTTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTT-T-TGTGT--GGT--T-----AAA-C-AA-AACT---CAA-------C---GTTG-CC----GTGTTT----AAACAA------G-TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAAGAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTA--T--TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
Reference ( family-2056 ) : TATTAATCTAAAGCACATTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCATA-A-CAT-CTGCAG----AATCGTTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTT-T-TGTGT--GGT--T-----AAA-C-AA-AACT---CAA-------C---GTTG-CC----GTGTTT----AAACAA------G-TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAAGAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTA--T--TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
gi|1 : TAGTAATC-AAAGAACATTTAAATTTAATCTAATCT-A--TAACTGAAG--AACCTTTAG--------GTGCCACCTGTCAGACCACTATTAT--T--TT-TATTGAGACCGT----CAT-CTGCAG----AATCATTCTCTGGATTCGT-CA---GTGTTTTATTT-GGTT-T-CGTG--------A-----AAA-C-AA-AATT---CAA-------C---GATG-TCCGAAGTGTTT-----AACAA------G-TGCAAATGGTTCTCTCAATCT--GCCTTTATCT---TT-ATATT--AACTGGTTCCA-------CCCAGGAAAGAACT-TTGGGTCCAATCACAAAATATAGA----------GGA--TGACTCTT-CT---TCA-AGTG-----------------ATGA----TTTTGG-GAGTA-------AAAGGTA-TTTTTTATG
gi|10 : acagtatttttgaactttttgagaagcaagggtcataaggatttctcgggggctgaattttcagggcaattttttttgggggggggggggtcacattttttAACACATGTAATTTTGATCTGCACT-G--TTACTGAcataatt
gi|11 : attagtggttttttggtttttttgtaactttttagagtagcaagggcctttatgacttgggggggggggattctgggggttcataaattttgtttgagggtaacacattttTTTTCTGGATTTGTTCA---GTGTTTCATTT-TGTTAT-TGTA--------------AAA-A-GA-AAC----CAATGTATGAC---GTGG-CC----ATGTTTTATTAAAGAA------GGTGCAAGTGGTTC------T--------------------ATATA--AACTGTTTCAA-------CCCAGGAAAGAACA--AAAGCCTTATCGCAAAACATAgtgttttg
gi|12 : GTCATTATGGCTC-TCTGGGGCTG--A--A----TTCTGG-GGGTC-------AAAAATG-TTCTTTa
gi|14 : acagttttttgaacttattgagttgcaaggTTC---TTTATATA--AACTGGTTCCA-------CCTGGGAAAGAACA-TTGAGCCCGATCGAAAAATGTAGAATTTATCTTTGTA--T--TTTTT-gagggtcacactatttgaatattaatttaaagc
gi|15 : TTTATG--T--TTTTT-CTACGCCATGGTGACTC-TTTAGG--TG--ATAATTTTTTTTAT-GGGTA-------AA--------TTTTATGt
gi|16 : TCTTTATG--T--TTTTG-CTACGCCATGGTGACTC-TTTAGG--TG--ATGA----TTTc
gi|2 : -G--TTACTGAGA--GACTTTTTGCACATTTAGTGCTGCT------------GTTAT--T--T-ACAAAGAAACTATATA-CATTCTACAG----GATTGTTTCCTCAATTCATTCATTTACATTTTAATT-GGAT-T-TGT---------------AAATC-AA-AATTTAACAA-------C---ATTG-CC----ATGTTA----AAACAAATTAAAG-TGCAACTGATTC------TTT--GTTTATACTCGTTTT-ACATG--TATT-ATT--A-------ACAG---ATGAACA-TTGAGCCAGATCAAAAAATGTACAATTTATTGTAATATTT--TTTTT-CTACATTGTGGTGACCC-CTCGGG--TGACATG-----TTTTAG-GGGTAAAAACTTAAAAGTA-TTTTTTAT
gi|3 : tgagccagcactgccaTTTGATCTACATT-G--TTACTGAAG--GACCTTTTG--------GTACCGCC------------ATTAT--TATTTACGTCAAGACCATA-AATAT-CTGCAG----AATCATTTTGGGGATTCGT-CA---ACATTTTATTT-GGTT-T---------GT--A-----AAA-CCAA-AATT---CAA-------CAATGTTG-CC----ATGTTT----AAACAACTGA--G-TGCAACTGGTTC------TCTCTGTCTTTATCA---TT-ATATATAAACTGGTTCCA-------TCTGTGAAAGAACAATTGGAATCAGTTGCAAAATGCAAAATTTATCTTTGTA--T--TTTAT-TTTTGTCATAGTGACCC-TTCAGG--TG--ATGT----TTCTGG-GAGGA-------AAAAGTA-TTTTTTATGacgtatattatgtaagatttgcattagcaggaacatagatttatatctattttaatt
gi|4 : caTATTAATTTAAAGCACATTGAATTTTGATCTACACTCG--TTACTGAAA--GACTTTTTG--------GTGCCACC------------ATTAT--T--TTACACCGAGACCAT----CAT-CTGCAGTTCTACTCACTTTCTGGATTCAT-AA---GCATTCTATTT-GGTT-T-TGTGTTTGGT--T-----CAA-C-AACAACC---CAA-----------GTTG-TC----GTGTTT----AAACAA------A-TGCAACTGGTTC------TGT--GCTTTTATTC---TT-ATATA--AAGTAGTTCCAGCCTCCACCTGGGAAAGAACA-CTGAACCTGATTGTAATATGAAGAATTTATCTTCGTA--C--TTTTT-CTGCGTCATGGTGACCC-TTCAGG--TG--ATGA----TTTTGG-AGGTA-------AAAAGTA-TTCTTTATGtataaattaagcaacaatttgtgctcataaacactgaattatacatatgatttttaat
gi|5 : TATTAATTTAAAGCACACTTACTTCTGATCTACACT-G--TTACCAAAG--GACGTTTTG--------ATGCTGCC------------ATTATTAT--TTATGTCCTGACCAT----CAT-CTGTAG------TCGTATTCTGGATTTGT-CA---GCGTTTTATTT-GGTT-TGTGTTT--GGT--TTTGTAAAA-C-AA-AACT---CAA-------C---AATGTCC----G
gi|6 : aattaattatcattcagtgtttttaaactttttgagttgtaaaggtcattatgattctctaaggctgaattctgggggtcaaaattttgtttttgagggtcaagtgatctaaaTTTTCTGGAACAGT-CA---GCATTAAATTTTGGTT-T-TGTGTTTGGTATT-----CAA-C-AA---CG---CGA-------C---AT-A-CC----ACGTC-------AC------------CA--TGTTTC------TCT--GCACTTATTC---TT-ACATA--AACTGGTTCTA-------CCCAAGAAAGAACA-CTGATCCCATTCAAAATACCTAGAATT-ATCTTCGTG--A--TTTTT-CTGCATCATGGTGACCC-TTTGGG--TG--ATGA----TTTTGG-GGGTA-------AAGAGTATTTTTTTATGacatcgccatggtatttgcatggaacagtgtaactg
gi|7 : -TGAAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCTA-------CTTGAAAAAGATGA-TAGAGCCCAATAACAAAACACAGAATTTATCTTCATA--T--TTTTT-CTGCATCATGGTAAGCC-TT-GGG--TG--ATGA----TTTTGG-GGGTA-------TAAAGTA-ATTTTAATGcat
gi|8 : atgtagtacttagaatcacC----ATATTT----ACACAA------------ACTGGCTC------TCT--GCTTTTATTC---T-------------GGTTCCG-------CCTGGGAAA---CA-TTGAACCCAAACGCAAAATGTA-AATCTATCTTTGTA--T--TTTTTTCTGCATCATTGTGACCCTTTCGGG--TG--ATGT----TTTTGGTGGGTA-------AAAAGTtgtaaattatgcagagatttgcataaacagaaacactga
gi|9 : ctaaattaatTATTAATCTAAAGCACACTTAATTTTGATCTACACT-GTTTTAATAAAAATGATCTTTTT--------GTCCCGCC------------Attgggacggggggtgccataaattacacagagatttgtattaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTGTTTTTAATTTAATCTTTATAGTCAATATAACTCTGGGGCTGAATTCTGATGGTAAAATGTTTTGGGGGATCACACATTTTAAATATTTAAGGCA
Alignments
lowQualScore : 22222222 333333333333 11111 4444 222222 1 111 666666666666666 1111 22222222222 1111 111111 33333333 111111 1111111 1111111
lowQualScore : 3 5 77 99 44444444 444444444444 33333 11 1111 8 111111 1 000 5 5 55 777777777777777 5 5 5 3333 55555555555 1 5 0000 555555 66666666 444444 1 66 2 777 4 66 4444444 1 1 4 1 0 0 1 0 3 66666 4 3 4 3 55 55 99999 4 4444444 5
lowQualScore : . . .. .. ........ ............ ..... .. .... . ...... . ... . . .. ............... . . . .... ........... . . .... ...... ........ ...... . .. . ... . .. ....... . . . . . . . . . ..... . . . . .. .. ..... . ....... .
lowQualScore : 2 7 99 22 22222222 222222222222 00000 66 8888 0 444444 4 000 7 7 99 999999999999999 7 7 7 6666 77777777777 4 7 6666 333333 66666666 444444 4 99 2 888 4 11 4444444 7 9 4 7 1 7 4 1 0 11111 0 7 0 9 55 55 66666 4 4444444 0
consensus : TATTAATCTAAAGCACATTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCATA-A-CAT-CTGCAG----AATCGTTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTT-T-TGTGT--GGT--T-----AAA-C-AA-AACT---CAA-------C---GTTG-CC----GTGTTT----AAACAA------G-TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAAGAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTA--T--TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
Reference ( family-2056 ) : TATTAATCTAAAGCACATTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCATA-A-CAT-CTGCAG----AATCGTTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTT-T-TGTGT--GGT--T-----AAA-C-AA-AACT---CAA-------C---GTTG-CC----GTGTTT----AAACAA------G-TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAAGAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTA--T--TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
gi|1 : TAGTAATC-AAAGAACATTTAAATTTAATCTAATCT-A--TAACTGAAG--AACCTTTAG--------GTGCCACCTGTCAGACCACTATTAT--T--TT-TATTGAGACCGT----CAT-CTGCAG----AATCATTCTCTGGATTCGT-CA---GTGTTTTATTT-GGTT-T-CGTG--------A-----AAA-C-AA-AATT---CAA-------C---GATG-TCCGAAGTGTTT-----AACAA------G-TGCAAATGGTTCTCTCAATCT--GCCTTTATCT---TT-ATATT--AACTGGTTCCA-------CCCAGGAAAGAACT-TTGGGTCCAATCACAAAATATAGA----------GGA--TGACTCTT-CT---TCA-AGTG-----------------ATGA----TTTTGG-GAGTA-------AAAGGTA-TTTTTTATG
gi|10 : acagtatttttgaactttttgagaagcaagggtcataaggatttctcgggggctgaattttcagggcaattttttttgggggggggggggtcacattttttAACACATGTAATTTTGATCTGCACT-G--TTACTGAcataatt
gi|11 : attagtggttttttggtttttttgtaactttttagagtagcaagggcctttatgacttgggggggggggattctgggggttcataaattttgtttgagggtaacacattttTTTTCTGGATTTGTTCA---GTGTTTCATTT-TGTTAT-TGTA--------------AAA-A-GA-AAC----CAATGTATGAC---GTGG-CC----ATGTTTTATTAAAGAA------GGTGCAAGTGGTTC------T--------------------ATATA--AACTGTTTCAA-------CCCAGGAAAGAACA--AAAGCCTTATCGCAAAACATAgtgttttg
gi|12 : GTCATTATGGCTC-TCTGGGGCTG--A--A----TTCTGG-GGGTC-------AAAAATG-TTCTTTa
gi|14 : acagttttttgaacttattgagttgcaaggTTC---TTTATATA--AACTGGTTCCA-------CCTGGGAAAGAACA-TTGAGCCCGATCGAAAAATGTAGAATTTATCTTTGTA--T--TTTTT-gagggtcacactatttgaatattaatttaaagc
gi|15 : TTTATG--T--TTTTT-CTACGCCATGGTGACTC-TTTAGG--TG--ATAATTTTTTTTAT-GGGTA-------AA--------TTTTATGt
gi|16 : TCTTTATG--T--TTTTG-CTACGCCATGGTGACTC-TTTAGG--TG--ATGA----TTTc
gi|2 : -G--TTACTGAGA--GACTTTTTGCACATTTAGTGCTGCT------------GTTAT--T--T-ACAAAGAAACTATATA-CATTCTACAG----GATTGTTTCCTCAATTCATTCATTTACATTTTAATT-GGAT-T-TGT---------------AAATC-AA-AATTTAACAA-------C---ATTG-CC----ATGTTA----AAACAAATTAAAG-TGCAACTGATTC------TTT--GTTTATACTCGTTTT-ACATG--TATT-ATT--A-------ACAG---ATGAACA-TTGAGCCAGATCAAAAAATGTACAATTTATTGTAATATTT--TTTTT-CTACATTGTGGTGACCC-CTCGGG--TGACATG-----TTTTAG-GGGTAAAAACTTAAAAGTA-TTTTTTAT
gi|3 : tgagccagcactgccaTTTGATCTACATT-G--TTACTGAAG--GACCTTTTG--------GTACCGCC------------ATTAT--TATTTACGTCAAGACCATA-AATAT-CTGCAG----AATCATTTTGGGGATTCGT-CA---ACATTTTATTT-GGTT-T---------GT--A-----AAA-CCAA-AATT---CAA-------CAATGTTG-CC----ATGTTT----AAACAACTGA--G-TGCAACTGGTTC------TCTCTGTCTTTATCA---TT-ATATATAAACTGGTTCCA-------TCTGTGAAAGAACAATTGGAATCAGTTGCAAAATGCAAAATTTATCTTTGTA--T--TTTAT-TTTTGTCATAGTGACCC-TTCAGG--TG--ATGT----TTCTGG-GAGGA-------AAAAGTA-TTTTTTATGacgtatattatgtaagatttgcattagcaggaacatagatttatatctattttaatt
gi|4 : caTATTAATTTAAAGCACATTGAATTTTGATCTACACTCG--TTACTGAAA--GACTTTTTG--------GTGCCACC------------ATTAT--T--TTACACCGAGACCAT----CAT-CTGCAGTTCTACTCACTTTCTGGATTCAT-AA---GCATTCTATTT-GGTT-T-TGTGTTTGGT--T-----CAA-C-AACAACC---CAA-----------GTTG-TC----GTGTTT----AAACAA------A-TGCAACTGGTTC------TGT--GCTTTTATTC---TT-ATATA--AAGTAGTTCCAGCCTCCACCTGGGAAAGAACA-CTGAACCTGATTGTAATATGAAGAATTTATCTTCGTA--C--TTTTT-CTGCGTCATGGTGACCC-TTCAGG--TG--ATGA----TTTTGG-AGGTA-------AAAAGTA-TTCTTTATGtataaattaagcaacaatttgtgctcataaacactgaattatacatatgatttttaat
gi|5 : TATTAATTTAAAGCACACTTACTTCTGATCTACACT-G--TTACCAAAG--GACGTTTTG--------ATGCTGCC------------ATTATTAT--TTATGTCCTGACCAT----CAT-CTGTAG------TCGTATTCTGGATTTGT-CA---GCGTTTTATTT-GGTT-TGTGTTT--GGT--TTTGTAAAA-C-AA-AACT---CAA-------C---AATGTCC----G
gi|6 : aattaattatcattcagtgtttttaaactttttgagttgtaaaggtcattatgattctctaaggctgaattctgggggtcaaaattttgtttttgagggtcaagtgatctaaaTTTTCTGGAACAGT-CA---GCATTAAATTTTGGTT-T-TGTGTTTGGTATT-----CAA-C-AA---CG---CGA-------C---AT-A-CC----ACGTC-------AC------------CA--TGTTTC------TCT--GCACTTATTC---TT-ACATA--AACTGGTTCTA-------CCCAAGAAAGAACA-CTGATCCCATTCAAAATACCTAGAATT-ATCTTCGTG--A--TTTTT-CTGCATCATGGTGACCC-TTTGGG--TG--ATGA----TTTTGG-GGGTA-------AAGAGTATTTTTTTATGacatcgccatggtatttgcatggaacagtgtaactg
gi|7 : -TGAAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCTA-------CTTGAAAAAGATGA-TAGAGCCCAATAACAAAACACAGAATTTATCTTCATA--T--TTTTT-CTGCATCATGGTAAGCC-TT-GGG--TG--ATGA----TTTTGG-GGGTA-------TAAAGTA-ATTTTAATGcat
gi|8 : atgtagtacttagaatcacC----ATATTT----ACACAA------------ACTGGCTC------TCT--GCTTTTATTC---T-------------GGTTCCG-------CCTGGGAAA---CA-TTGAACCCAAACGCAAAATGTA-AATCTATCTTTGTA--T--TTTTTTCTGCATCATTGTGACCCTTTCGGG--TG--ATGT----TTTTGGTGGGTA-------AAAAGTtgtaaattatgcagagatttgcataaacagaaacactga
gi|9 : ctaaattaatTATTAATCTAAAGCACACTTAATTTTGATCTACACT-GTTTTAATAAAAATGATCTTTTT--------GTCCCGCC------------Attgggacggggggtgccataaattacacagagatttgtattaa
blockSeqs : T C TT AT CACATTTA . TAT TA ATA T TTCTAC T TTT T A GT TTGGTTTTGTA T C C TTAA TGTATGAC G T . TTATTA ATTAAAG . T CT T GTT T TA GCCTCCA C G A T G T TTT T A T T GC AC ATTTT T AAAACTT T
blockSeqs : T . . . . . TAT TA AAA . GA T . . . T GTTTGGTATT . . . T CAAT T . . AA CTGAG . C . C . . . . T G . G C T T . A . T . . A . . .
blockSeqs : T . . . . . T TA . . AA . . . . T GTTTGGTT . . . C C T . . TA GG . G . T . . . . A T . G A T T . A . T . . A . . .
blockSeqs : . . . . . T A . . . . . . . T GTA . . . T C T . . TA A . C . A . . . . T G . A G A T . T . C . . T . . .
blockSeqs : . . . . . . . . . T A . . . G C T . . TA . . C . C . . . . T A . G G T T . G . C . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . C . T . . . . C A . A G C C . G . C . . A . . .
blockSeqs : . . . . . . . . . T G . A . C A . G . T . . A . . .
blockSeqs : . . . . T . . A C T . G . C . . T . .
blockSeqs : T T . . . . . .
blockSeqCons : ************ TA **** GTTTGTA******** **** TA**** ATA***** ****** T****
originalCons : TATTAATCTAAAGCACATTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCATA-A-CAT-CTGCAG----AATCGTTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTT-T-TGTGT--GGT--T-----AAA-C-AA-AACT---CAA-------C---GTTG-CC----GTGTTT----AAACAA------G-TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAAGAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTA--T--TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
finalCons : TATTAATCTAAAGCACATTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCAT----CAT-CTGCAG----AATCGTTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTT-T-TGTGTTTGTA--------AAA-C-AA-AACT---CAA-------C---GTTG-CC----GTGTTTA----AACAAATA-----TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAAGAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTAT----TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTGTTTTTAATTTAATCTTTATAGTCAATATAACTCTGGGGCTGAATTCTGATGGTAAAATGTTTTGGGGGATCACACATTTTAAATATTTAAGGCA
Alignments
lowQualScore : 22222222 333333333333 11111 222 222222 1 111 333333333333 1 1111 1111111 111 1111 5555555555 111111 1111111 1111111
lowQualScore : 3 5 77 99 44444444 444444444444 33333 11 888 8 111111 1 000 5 5 111111111111 5 5 1 3333 8888888 000 1 5 0000 66 2222222222 0 444444 66 2 777 4 66 4444444 1 1 4 1 0 0 1 0 3 66666 4 3 4 3 55 55 99999 4 4444444 5
lowQualScore : . . .. .. ........ ............ ..... .. ... . ...... . ... . . ............ . . . .... ....... ... . . .... .. .......... . ...... .. . ... . .. ....... . . . . . . . . . ..... . . . . .. .. ..... . ....... .
lowQualScore : 2 7 99 22 22222222 222222222222 00000 66 000 0 444444 4 000 7 0 111111111111 7 7 4 6666 6666666 000 4 7 6666 99 2222222222 1 444444 99 2 888 4 11 4444444 7 9 4 7 1 7 4 1 0 11111 0 7 0 9 55 55 66666 4 4444444 0
consensus : TATTAATCTAAAGCACATTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCATA-ACAT-CTGCAG----AATCGTTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTTTTGTG------TTTG-TAAAAC-AA-AACT---CA-------AC---GTTG-CC----GTGTTTAAACAAAT----G---TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAAGAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTA--T--TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
Reference ( family-2056 ) : TATTAATCTAAAGCACATTTAATTTTGATCTACACT-G--TTACTGAAG--GACCTTTTG--------GTGCCGCC------------ATTAT--T--TTACGTCGAGACCAT---CAT-CTGCAG----AATCGTTTTCTGGATTCGT-CA---GCGTTTTATTT-GGTTTTGTG------TTTG-TAAAAC-AA-AACT---CA-------AC---GTTG-CC----GTGTTTAAACAAAT----A---TGCAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCCA-------CCCGGGAAAGAACA-TTGAGCCCGATCGCAAAACGTAGAATTTATCTTCGTA--T--TTTTT-CTGCGTCATGGTGACCC-TTCGGG--TG--ATGA----TTTTGG-GGGTA-------AAAAGTA-TTTTTTATG
gi|1 : TAGTAATC-AAAGAACATTTAAATTTAATCTAATCT-A--TAACTGAAG--AACCTTTAG--------GTGCCACCTGTCAGACCACTATTAT--T--TT-TATTGAGACCGT---CAT-CTGCAG----AATCATTCTCTGGATTCGT-CA---GTGTTTTATTT-GGTTTCGTG------------AAAAC-AA-AATT---CA-------AC---GATG-TCCGAAGTGTTT-AACAA------G---TGCAAATGGTTCTCTCAATCT--GCCTTTATCT---TT-ATATT--AACTGGTTCCA-------CCCAGGAAAGAACT-TTGGGTCCAATCACAAAATATAGA----------GGA--TGACTCTT-CT---TCA-AGTG-----------------ATGA----TTTTGG-GAGTA-------AAAGGTA-TTTTTTATG
gi|10 : acagtatttttgaactttttgagaagcaagggtcataaggatttctcgggggctgaattttcagggcaattttttttgggggggggggggtcacattttttAACACATGTAATTTTGATCTGCACT-G--TTACTGAcataatt
gi|11 : attagtggttttttggtttttttgtaactttttagagtagcaagggcctttatgacttgggggggggggattctgggggttcataaattttgtttgagggtaacacattttTTTTCTGGATTTGTTCA---GTGTTTCATTT-TGTTAT-----------TG-TAAAAA-GA-AAC----CAATGTATGAC---GTGG-CC----ATGTTTTATTAAAG----AAGGTGCAAGTGGTTC-------------------------T-ATATA--AACTGTTTCAA-------CCCAGGAAAGAACA--AAAGCCTTATCGCAAAACATAgtgttttg
gi|12 : GTCATTATGGCTC-TCTGGGGCTG--A--A----TTCTGG-GGGTC-------AAAAATG-TTCTTTa
gi|14 : acagttttttgaacttattgagttgcaaggTTC---TTTATATA--AACTGGTTCCA-------CCTGGGAAAGAACA-TTGAGCCCGATCGAAAAATGTAGAATTTATCTTTGTA--T--TTTTT-gagggtcacactatttgaatattaatttaaagc
gi|15 : TTTATG--T--TTTTT-CTACGCCATGGTGACTC-TTTAGG--TG--ATAATTTTTTTTAT-GGGTA-------AA--------TTTTATGt
gi|16 : TCTTTATG--T--TTTTG-CTACGCCATGGTGACTC-TTTAGG--TG--ATGA----TTTc
gi|2 : -G--TTACTGAGA--GACTTTTTGCACATTTAGTGCTGCT------------GTTAT--T--T-ACAAAGAAACTATATACATTCTACAG----GATTGTTTCCTCAATTCATTCATTTACATTTTAATT-GG------A------TTTG-TAAATC-AA-AATTTAACA-------AC---ATTG-CC----ATGTTAAAACAAATTAAAG---TGCAACTGATTC------TTT--GTTTATACTCGTTTT-ACATG--TATT-ATT--A-------ACAG---ATGAACA-TTGAGCCAGATCAAAAAATGTACAATTTATTGTAATATTT--TTTTT-CTACATTGTGGTGACCC-CTCGGG--TGACATG-----TTTTAG-GGGTAAAAACTTAAAAGTA-TTTTTTAT
gi|3 : tgagccagcactgccaTTTGATCTACATT-G--TTACTGAAG--GACCTTTTG--------GTACCGCC------------ATTAT--TATTTACGTCAAGACCATAAATAT-CTGCAG----AATCATTTTGGGGATTCGT-CA---ACATTTTATTT-GGTTT-------------G-TAAAACCAA-AATT---CA-------ACAATGTTG-CC----ATGTTTAAACAACT----GAG-TGCAACTGGTTC------TCTCTGTCTTTATCA---TT-ATATATAAACTGGTTCCA-------TCTGTGAAAGAACAATTGGAATCAGTTGCAAAATGCAAAATTTATCTTTGTA--T--TTTAT-TTTTGTCATAGTGACCC-TTCAGG--TG--ATGT----TTCTGG-GAGGA-------AAAAGTA-TTTTTTATGacgtatattatgtaagatttgcattagcaggaacatagatttatatctattttaatt
gi|4 : caTATTAATTTAAAGCACATTGAATTTTGATCTACACTCG--TTACTGAAA--GACTTTTTG--------GTGCCACC------------ATTAT--T--TTACACCGAGACCAT---CAT-CTGCAGTTCTACTCACTTTCTGGATTCAT-AA---GCATTCTATTT-GGTTTTGTG------TTTGGTTCAAC-AACAACC---CA-------A----GTTG-TC----GTGTTTAAACAAAT---------GCAACTGGTTC------TGT--GCTTTTATTC---TT-ATATA--AAGTAGTTCCAGCCTCCACCTGGGAAAGAACA-CTGAACCTGATTGTAATATGAAGAATTTATCTTCGTA--C--TTTTT-CTGCGTCATGGTGACCC-TTCAGG--TG--ATGA----TTTTGG-AGGTA-------AAAAGTA-TTCTTTATGtataaattaagcaacaatttgtgctcataaacactgaattatacatatgatttttaat
gi|5 : TATTAATTTAAAGCACACTTACTTCTGATCTACACT-G--TTACCAAAG--GACGTTTTG--------ATGCTGCC------------ATTATTAT--TTATGTCCTGACCAT---CAT-CTGTAG------TCGTATTCTGGATTTGT-CA---GCGTTTTATTT-GG-TTTGTGTTTGGTTTTG-TAAAAC-AA-AACT---CA-------AC---AATGTCC----G
gi|6 : aattaattatcattcagtgtttttaaactttttgagttgtaaaggtcattatgattctctaaggctgaattctgggggtcaaaattttgtttttgagggtcaagtgatctaaaTTTTCTGGAACAGT-CA---GCATTAAATTTTGGTTTTGTG------TTTG-GTATTC-AACAACG---CG-------AC---AT-A-CC----ACGTC---AC--------------CA--TGTTTC------TCT--GCACTTATTC---TT-ACATA--AACTGGTTCTA-------CCCAAGAAAGAACA-CTGATCCCATTCAAAATACCTAGAATT-ATCTTCGTG--A--TTTTT-CTGCATCATGGTGACCC-TTTGGG--TG--ATGA----TTTTGG-GGGTA-------AAGAGTATTTTTTTATGacatcgccatggtatttgcatggaacagtgtaactg
gi|7 : ---TGAAACTGGTTC------TCT--GCCTTTATTC---TT-ATATA--AACTGGTTCTA-------CTTGAAAAAGATGA-TAGAGCCCAATAACAAAACACAGAATTTATCTTCATA--T--TTTTT-CTGCATCATGGTAAGCC-TT-GGG--TG--ATGA----TTTTGG-GGGTA-------TAAAGTA-ATTTTAATGcat
gi|8 : atgtagtacttagaatcacC----ATATTTACACAAA--------------CTGGCTC------TCT--GCTTTTATTC---T-------------GGTTCCG-------CCTGGGAAA---CA-TTGAACCCAAACGCAAAATGTA-AATCTATCTTTGTA--T--TTTTTTCTGCATCATTGTGACCCTTTCGGG--TG--ATGT----TTTTGGTGGGTA-------AAAAGTtgtaaattatgcagagatttgcataaacagaaacactga
gi|9 : ctaaattaatTATTAATCTAAAGCACACTTAATTTTGATCTACACT-GTTTTAATAAAAATGATCTTTTT--------GTCCCGCC------------Attgggacggggggtgccataaattacacagagatttgtattaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TACAGTGTTTTTAATTTAATCTTTATAGTCAATATAACTCTGGGGCTGAATTCTGATGGTAAAATGTTTTGGGGGATCACACATTTTAAATATTTAAGGCA