lowQualScore : 11111111111111111111111111111111111
lowQualScore : 222 222222222 6666666666666666666666666 888888888 1 2 222 777777777777 111 1 22222 1 1 55555555555 1 2 22 22222 2 444444444444 55555555555 2222 22 1 3333 1 1 222 44444 2 22222 11 555555555555555 2 333 11 66666666666666666666666666666666666 1 1 2 1 222 1
lowQualScore : 999 5 5 000000000 5 7777777777777777777777777 2 000000000 5 6 0 777 6 6 333333333333 6 333 3 00000 3 6 22222222222 7 0 2 66 88888 6 0 666666666666 99999999999 0000 99 3 3 9999 0 0 9 3 3 333 55555 3 99999 88 0 888888888888888 0 2 333 88 66666666666666666666666666666666666 3 6 5 3 6 77 5 3 6 111 0
lowQualScore : ... . . ......... . ......................... . ......... . . . ... . . ............ . ... . ..... . . ........... . . . .. ..... . . ............ ........... .... .. . . .... . . . . . ... ..... . ..... .. . ............... . . ... .. ................................... . . . . . .. . . . ... .
lowQualScore : 888 0 0 000000000 0 9999999999999999999999999 5 000000000 0 0 0 777 0 0 000000000000 0 333 3 33333 3 3 33333333333 3 0 5 00 55555 0 0 000000000000 77777777777 0000 77 3 0 0000 0 8 0 7 3 333 33333 7 77777 33 7 333333333333333 0 5 555 00 00000000000000000000000000000000000 3 7 0 7 7 77 0 0 0 555 5
consensus : TTTCATTATTCTTGTT-CATTTT-AATGTGCTA-TTAA---------T-ATCACCCTGTATCA--TTGATTTT-TACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACAAATGAACACTA--GTAACGAATATCTATC-CATG--TCTACAGAATGAAC-TATCCTAAGAATTAA-GTCAATGGTAGTTGGC----GAATTGGGCCCCATAGAATGNCAATGTTCGAGCTTTACAAACCTTCCAAAGTT--AATCTTGACACATTCGTA---------CCCACGGC-TGAAGCTTCACCGGGAAA-GGAAGCCT-TTCCACAATAGTGNCTTCCATTTC-AATATG-CGAGAATTNTG-AGATG---TCGCC---AAATC-TTTGTAACTGT-T--CACGTATC--AAAGTAATGTCCACAA---------CAAGGCCTTTATTAAGNTCNATTCTNTTCCACACCGACTTCGCACATGTTTAATCTGTGTCGCCAAT---AAGGAGATTGCC-TCCAACCGTCCGGAAATTTNTCTTTCCATTGGCTGGGTCTNCTGCATGATNCGATNATTA
Reference ( gi|2 ) : TTTCATTATTCTTGTT-CATTTT-AATGTGCTA-TTAA---------T-ATC-------ATCA--T--ATTTT-TA-CCTGAATAAATCT---------ATCTATCAGATAATATTACAACAA-TGAACACTA-TGCAATGAATATTGATC-TAT---TTTACAGAATTAAC-TATCCTAAAGATTAA-GTCATTGGTAGTTTGT----GA--TGGGTCCTAT-GAATGGCAATATTCGA-CT--ATAAAC-TTTCAGAGTTAAAATCTTGACACATTCATA---------CCCACGGCTTGAAGCTTCACTGGGAAT-GGAAGCCT-TTCCACAATAGTGTCTTCCATTT--GATATG-CGAGAGTTCTG-AGATG---TCG-C---AAATCTTTTGTAACTGT-T--AACGTATC--AAAGCAATGTCCACAA---------TAAA-TCTTTA-TAAACTCCATTCTCTTCCACACCG------------------TTGTGTCACCATTTTGAAGGAGATTGCC-TCCAACTGTCCCGAAATTTCT-TTTCCATTGGCTGAGTCTTCTACATGATTAAATAATTA
gi|13 : TTTCATTATTCTTGT--CATTTT-AATGTGCTA-TTAA---------T-ATCACCCTGTATCA--TTGATTTT-TACCCTGAATAAAT
gi|8 : gtataatattttacctaatattgaatttataTTTTATTATTCTTGT--CATTTT-AATGTGCTA-TTAA---------T-ATCACCCTGTATCA--TTGATTTT-TACCCTGAATAAAT
gi|6 : catttgtatttcattttatgttaatgtctagtcttgtgatttgcataatattttacctgatatggatatctgcatttgaatttataTTTCATTATTTTTGT--CATTTT-AATGTGCTA-TTAA---------T-ATT-------AC----------------CCTGAATAAATCT---------ATC
gi|11 : ccccattgaaaataagcaccagtgctttcatgggatatccttaggtgtaaatccatgatgcatttgtatttcattttatgttaactttataaatatgtctagtcttatgatttgcataatattttaccaggtatggatatctgcttttgaatttataTTTCATTATTCTTG-T-CATTTTAAATGTGCTA-TTAA---------T-ATC-------ATCC--T--A
gi|5 : cataatattttatctgatatggatacctgcatttaaattgtatTTTCATTATTCTTG-T-CA-TTT-AATGTGGTATTTAAATCACCCTGT-ATC-------ATTGATT--ATTTT-TATCCTGAATAGATgcctgtatcattgatttttaccctga
gi|7 : gccccattagaaataagcaccagtattttcaagggctatcattaggtgtaaatcaatcattctatatatgtctaattctataatttacatacatttatatgtaatattttaagattgtacttggtatggatatctgaatctataTCATTATTCTTGT--CTTTTT-AGTATGCTA-TTGA---------T-ATCACCCTGTATCA--TTGATTCT-TACCCTGAATAAA
gi|16 : aaggaccccattggaaatatatgggctatcaatgatatttcattttatgtttataaatatatgactagtcgatattttaaaattgtacctgatatggatatctgaatttatatgTCATTATTCTT----CATTTT-AATGTTCTA-TTAA---------T-ATC-------ACC
gi|1 : aatcgaacttatacttgaTACCCTTTTTACATTT--AATGTACAA-GCAG---------TTAGC-------ATCA--T--ACGCTATA-C---AGTAAACATTAAAAACAAATCTATCAGATCACATTACAACAAATGAACACT---GTAACGAATACCTATC-CATG--TCTACAGA--TAACGTATCC----AATTAAAGTCAATGGAAGTTGGT----GA--TGGG-CCTATAGAATGGCAAT--TCGA-CTTTACAAAC-TTCCA-------AAT-TTGACACATACATATGAAGCTTCCCCACGG---GAAGCTTCACTGGGAAAAGGAAGTCTATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCG-CTAAAAATCTTATGTAACTGT-TTCATCGTATTCAAAAATAATATTCAAAA---------CAAAGCCTTTATTAAAGTCAA-TCTCTTCCACACCGACTTCGCACATGTTTAATCTGTGTCGCCAAT----AGGAGATTGCT-TCCAACC-TAAGAAAATTATT-CTTCCATTGGCTGGGTCTTCTGCATGATGCGATCATTActg
gi|3 : aaacattaaaatattcatttatatttaaagaaatatgttctccttttatatagatgtaaattttgaaggatagtataccaaaaATAA-TGAACACTAAGGTAACAAATAT-AATTATATCAGTCTACAGTATGAAC-TATACTAAGAATTAA-TTCAGTGGTACCTGGTAGTGGAATTGGGCCTCAT-GAATGCCAATGTTCAAGCT--ACAAACCTTTCAAAGTT----TC------CATTCG--------------ACGTCTT---------CCGGAAAG-AAAACCCT-TTCCACAATAGTGTCTTCCATCA--G-TAGT-CGCGAATTGTT-AAATG---TTGCC---AAATC-TTTGTAGCTGTCT--CACGTATC--AAAGCAATGCCCACAAAACAAAGTTTAAG-CCTTTA-TAAGCTCC-TTC-ATTCCACACattacgaagaatt
gi|4 : aaaaaccaaacccaaaacgatcacacattcacGAACACTA-TGTAACGAATATCTAAC--ATG--TCTACAGAATGAAA-TATCCTAAGAATTAA-GTCAATGGTAGTTGGC----AAATTGGGCCagaagataaaatggcgaagtaaacaatgtttaattgtatcgccaaaggagattgccgtccaactgtccagacatttctctttccattggctagttgctgcatgataaatgattaattacgaagaac
gi|9 : acataaaatatatcatttgtagcattgaagaaatatgttttcctttgaatattgtaaattttgaaggatagtctaccaaaataccttttacacatgtacaagcagtacagacatcatcgctatagcatccagtaaacattgaataaaaactatcaCAAAGTTCAAATCTTGACACATTCATA---------CCCACGGCATGAAGCTTCACTGGGAAA-GGAAGCCT-TTCCACAATAGTGGCTTCCATTTC-AATATG-TGAGAATTCTG-AGATG---TCGTT---AAATC-TTTGAAACTGT-T--CACCTATC--AAAGTAATGTCCACAA---------
gi|19 : CAATAGTGGCTTCCATTTC-AATATG-TGAGA
gi|3 : ------------------TTGTATCGCCA-----AAGGAGATTGCCGTCCAACTGTCCAGACATTTCTCTTTCCATTGGCT-AGT-TGCTGCATGA-TAAATGATTA
gi|17 : aaaaaccaaacccaaaacgatcacacattcacataatgaacactaaggtaacaaatataattatatcagtctacagtatgaactatactaagaattaattcagtggtacctggtagtggaattgggcctcatgaatgccaatgttcaagctacaaacctttcaaagtttccattcgacgtcttccggaaagaaaaccctttccacaatagtgtcttccatcagtagtcgcgaattgttaaatgttgccaaatctttgtagctgtctcacgtatcaaagcaatgcccacaaaacaaagtttaagcctttataagctccttcattccacacagaagataaaatggcgaagtaaacaatgtttaaTGCC-TCCAACTGTCCAGAAAATTGTCTTTCTATTGGCTGGGTattacgaagaac
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AAAGTCAACATAAAATATATCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCACCCAAAATACCTTTTACATATACAAGCAGTACAGGCATCATCGCTATAGCATCCAGTACT
Unaligned ( gi|12 ): TTAGATTATACTTGATATAATTATCTAATTTATAATTCATAATTCTTGTCATTTAATATGCTAGCTTATTTATAGCACCCTGCATCATTGATTTTTATCCTGAA
Unaligned ( gi|14 ): GGATTTGTATTTTCATTATTCTTGTCATTTTAAATGATATCTTTCTAGCCTGTATATATCATTGATTTTTACCCTGAAT
Unaligned ( gi|15 ): TAAATGTACAACAGTACAGGCATCATCGCTACAGCATCCAGTAAATTGAACTTAAGAACATCTATTGGAAC
Unaligned ( gi|18 ): GGAAGTCAACATAAAATATATCATTTGTAACA
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 2 11111 333333 1 333 11 111 1 1 222222222 2 11 4444 333333 444444444444 333333 1 1 111 111 222 111 111 1 11 11 444444444 11 111 111111111111111111111111111111111 444444 1 111
lowQualScore : 7 44 55 777 4 00000 9999 888 1 000000 6 7 7 3 7 777 33 333 55 9 8 0 3 0 0 1 666666666 6 0 3 1 11 1111 6 2 2 999999 3 222222222222 000000 2 2 0 1 0 1 88 1 444 777 444 111 111 0 33 33 222222222 44 11 555 88 888888888888888888888888888888888 555555 0 44 4 1 55 2 1 666 1
lowQualScore : . .. .. ... . ..... .... ... . ...... . . . . . ... .. ... .. . . . . . . . ......... . . . . .. .... . . . ...... . ............ ...... . . . . . . .. . ... ... ... ... ... . .. .. ......... .. .. ... .. ................................. ...... . .. . . .. . . ... .
lowQualScore : 7 88 55 000 0 00000 4444 888 0 555555 7 3 3 3 3 000 88 555 88 8 8 0 2 2 0 2 888888888 5 7 7 0 00 0000 7 5 5 888888 2 222222222222 888888 5 0 0 2 0 0 88 0 000 555 222 000 000 0 88 88 000000000 77 77 777 33 333333333333333333333333333333333 777777 0 55 2 0 88 5 0 777 0
consensus : TTTCATTATTCTTGT-CATTTT-AATGTGCTA--TTA---ATATC-AC-----CCTGTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTAT-GTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C-CTACAAACCTTCCAAAGTT--AA--TCTTGACACATTCATA---------CCCACGGC-T-GAAGCTTCACTGGG-AAAGGAAGCCT-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATCTT-T-GTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTATTAAACTCCATTCTCTTCCACACCGA---T----T-GC-------AC-ATGTTTAATCTGTGTCGCCA-T---AAGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGATN-AATNATTA
Reference ( family-2031 ) : TTTCATTATTCTTGTTCATTTT-AATGTGCTA--TTA---ATATC-AC-----CCTGTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA--GTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCCATAGAATGNCAATGTTCGAGCTTTACAAACCTTCCAAAGTT--AA--TCTTGACACATTCGTA---------CCCACGGC-T-GAAGCTTCACCGGG-AAAGGAAGCCT-TTCCACAATAGTGNCTTCCA-TTTCAATATGCGAGAATTNT--GAGATG---TCGCC--AAATCTT-T-GTAACTG-T-TCA-CGTATC--AAAGTAATGTCCAC--AACA------AGGCCTTTATTAAGNTCNATTCTNTTCCACACCGA--CT----TCGC-------AC-ATGTTTAATCTGTGTCGCCAAT---AAGGAGATTGCC-TCCAACCGTCCGGAAATTTNTCTTTCCATTGGCTGGGTCTNCTGCATGATNCGATNATTA
gi|1 : AGTAAACATTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACT---GTAACGAATAC--CTAT-CCATGTCTACAG-AT-AACGTATCC----AATTAAAGTCAATGGAAGTTGGT----GA--TGGG-CCTATAGAATGGCAA--TTCGA-CTTTACAAA-CTTCCAAA----------TTTGACACATACATATGAAGCTTCCCCACGG----GAAGCTTCACTGGGAAAAGGAAGTCTATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATCTTAT-GTAACTGTT-TCATCGTATTCAAAAATAATATTCAA--AACA------AAGCCTTTATTAAAGTCAA-TCTCTTCCACACCGA--CT----TCGC-------AC-ATGTTTAATCTGTGTCGCCAAT----AGGAGATTGCT-TCCAACC-TAAGAAAATTATTC-TTCCATTGGCTGGGTCTTCTGCATGATGCGATCATTA
gi|11 : aaacattaaaatattcatttatatttaaagaaatatgttctccttttatatagatgtaaattttgaaggatagtataccaaaataccctttttacatttaatgtacaagcagttagcatcatacgctatacTTTCATTATTCTTG-TCATTTTAAATGTGCTA--TTA---ATATC-ATCCTAGCCTGTAT----CATTG---ATTTTTACCCTGAattacgaagaatt
gi|12 : cataatattttatctgatatggatacctgcatttaaattgtatTTCATAATTCTTGT-CATTT--AATATGCTAGCTTATTTATAGC-AC-----CCTGCAT----CATTG---ATTTTTATCCTGAA
gi|13 : ttagattatacttgatataattatctaatttataaTTTCATTATTCTTGT-CATTTT-AATGTGCTA--TTA---ATATC-AC-----CCTGTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|14 : gtataatattttacctaatattgaatttataTTTCATTATTCTTGT-CATTTT-AA-ATGATA--TC-----TTTCTAG-----CCTGTATATATCATTG---ATTTTTACCCTGAAT
gi|16 : ggatttgtatTCATTATTCTT---CATTTT-AATGTTCTA--TTA---ATATC-AC-----CCTG
gi|17 : aatcgaacttatacttgaTGCC-TCCAACTGTCCAGAAAATTGTCTTTCTATTGGCTGGGT
gi|19 : CAATAGTGGCTTCCA-TTTCAATATGTGAGA
gi|2 : TTTCATTATTCTTGTTCATTTT-AATGTGCTA--TTA---ATATC-A------------T----CAT-----ATTTTTACC-TGAATAAATCT---------ATCTATCAGATAATATTACAACA-A-TGAACACTAT-GCAATGAATAT--TGAT-CTAT-TTTACAGAATTAAC-TATCCTAAAGATT-AAGTCATTGGTAGTTTGT----GA--TGGGTCCTAT-GAATGGCAATATTCGA---CTATAAACTTTC-AGAGTT--AAAATCTTGACACATTCATA---------CCCACGGC-TTGAAGCTTCACTGGG-AATGGAAGCCT-TTCCACAATAGTGTCTTCCA-TTT-GATATGCGAGAGTTCT--GAGATG---TCGC---AAATCTT-TTGTAACTG-T-TAA-CGTATC--AAAGCAATGTCCAC--AATA------AA-TCTTTAT-AAACTCCATTCTCTTCCACACCG--------------------------------TTGTGTCACCATTTTGAAGGAGATTGCC-TCCAACTGTCCCGAAATTTCT-TTTCCATTGGCTGAGTCTTCTACATGATTAAATAATTA
gi|3 : CAAAACGATCA---CACATT-CA-CATAATGAACACTAAGGTAACAAATATAATTATATCA-GTCTACAGTATGAAC-TATACTAAGAATT-AATTCAGTGGTACCTGGTAGTGGAATTGGGCCTCAT-GAATGCCAATGTTCAAGC--TACAAACCTTTCAAAGTT------TC------CATTCG--------------ACG---T-----CTT--CCGGA-AAGAAAACCCT-TTCCACAATAGTGTCTTCCA---TCAGTAGTCGCGAATTGT--TAAATG---TTGCC--AAATCTT-T-GTAGCTG-TCTCA-CGTATC--AAAGCAATGCCCACAAAACAAAGTTTAAGCCTTTA-TAAGCTCC-TTC-ATTCCACACAGAAGATAAAATGGCGAAGTAAACAATGTTTAAT-TGTATCGCCA-----AAGGAGATTGCCGTCCAACTGTCCAGACATTTCTCTTTCCATTGGCTAG--TTGCTGCATGATA-AATGATTA
gi|4 : aaaaaccaaaccGAACACTAT-GTAACGAATAT--CTA--ACATGTCTACAGAATGAAA-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----AAATTGGGCCattacgaagaac
gi|5 : acataaaatatatcatttgtagcattgaagaaatatgttttcctttgaatattgtaaattttgaaggatagtctaccaaaataccttttacacatgtacaagcagtacagacatcatcgctatagcatccagtaaacattgaataaaaactatcaTTTCATTATTCTTGT-CATTT--AATGTGGTA--TTT---AAATC-AC-----CCTGTAT----CATTGATTATTTTTATCCTGAATAGAT
gi|6 : gccccattagaaataagcaccagtattttcaagggctatcattaggtgtaaatcaatcattctatatatgtctaattctataatttacatacatttatatgtaatattttaagattgtacttggtatggatatctgaatctataTTTCATTATTTTTGT-CATTTT-AATGTGCTA--TTA---ATATT-AC-----CCTGAAT----
gi|7 : ccccattgaaaataagcaccagtgctttcatgggatatccttaggtgtaaatccatgatgcatttgtatttcattttatgttaactttataaatatgtctagtcttatgatttgcataatattttaccaggtatggatatctgcttttgaatttataTCATTATTCTTGT-CTTTTT-AGTATGCTA--TTG---ATATC-AC-----CCTGTAT----CATTG---ATTCTTACCCTGAATAAAaaatctatc
gi|8 : aaggaccccattggaaatatatgggctatcaatgatatttcattttatgtttataaatatatgactagtcgatattttaaaattgtacctgatatggatatctgaatttatatgTTTTATTATTCTTGT-CATTTT-AATGTGCTA--TTA---ATATC-AC-----CCTGTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|9 : catttgtatttcattttatgttaatgtctagtcttgtgatttgcataatattttacctgatatggatatctgcatttgaatttataCAAAGTTCAAA--TCTTGACACATTCATA---------CCCACGGCAT-GAAGCTTCACTGGG-AAAGGAAGCCT-TTCCACAATAGTGGCTTCCA-TTTCAATATGTGAGAATTCT--GAGATG---TCGTT--AAATCTT-T-GAAACTG-T-TCA-CCTATC--AAAGTAATGTCCAC--AA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTCAACATAAAATATATCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCACCCAAAATACCTTTTACATATACAAGCAGTACAGGCATCATCGCTATAGCATCCAGTACT
Unaligned ( gi|15 ): TAAATGTACAACAGTACAGGCATCATCGCTACAGCATCCAGTAAATTGAACTTAAGAACATCTATTGGAAC
Unaligned ( gi|18 ): GGAAGTCAACATAAAATATATCATTTGTAACA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 11111 333333 1 111 11 111 1 1 222222222 1 11 22 2 3333 44444444444 22 1 111 111 111 222 1 1 111 1 11 11 333333 2 11 33333333333333333333333333333333333 44444 1 1111
lowQualScore : 4 0 4 55 777 4 00000 9999 888 1 000000 6 7 7 3 7 000 33 333 55 9 8 0 3 0 0 1 666666666 6 3 11 88 3 0 2 9999 3 00000000000 22 2 3 0 111 0 88 0 444 777 000 0 0 111 0 33 33 888888 6 3 44 7 88888888888888888888888888888888888 44444 0 2 4 0 55 2 8888 1
lowQualScore : . . . .. ... . ..... .... ... . ...... . . . . . ... .. ... .. . . . . . . . ......... . . .. .. . . . .... . ........... .. . . . ... . .. . ... ... ... . . ... . .. .. ...... . . .. . ................................... ..... . . . . .. . .... .
lowQualScore : 0 8 0 55 000 0 00000 4444 888 0 555555 7 3 3 3 3 222 88 555 88 8 8 0 2 2 0 2 888888888 5 3 00 33 3 7 5 8888 2 22222222222 55 5 2 0 000 6 88 2 000 555 888 0 0 000 0 88 88 333333 7 7 77 3 00000000000000000000000000000000000 33333 0 5 2 2 88 5 7777 0
consensus : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA--CTACAAA-CTTTCAAAGTT-AAATCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACACCG--------A--T-GC-------AC-ATGTTTAATCTGTGTCGCCA-----AAGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-T-AAATNATTA
Reference ( family-2031 ) : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGAC-CTACAAACCTTCCAAAGTT--AATCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTATTAAACTCCATTCTCTTCCACACCG--------A--TTGC-------AC-ATGTTTAATCTGTGTCGCCAT----AAGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-T-NAATNATTA
gi|1 : AGTAAACATTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACAC---TGTAACGAATAC--CTAT-CCATGTCTACAG-AT-AACGTATCC----AATTAAAGTCAATGGAAGTTGGT----GA--TGGG-CCTATAGAATGGCAA--TTCGACTTTACAAA-CTTCCAAA--------TTTGACACATACATATGAAGCTTCCCCACGG---GAAGCTTCACTGGGAAAAGGAAGTC-TATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATC-TTATGTAACTGTT-TCATCGTATTCAAAAATAATATTCAA--AACA------AAGCCTTTATTAAAGTCAA-TCTCTTCCACACCG--------ACTTCGC-------AC-ATGTTTAATCTGTGTCGCCAA----TAGGAGATTGCT-TCCAACC-TAAGAAAATTATTC-TTCCATTGGCTGGGTCTTCTGCATGA-TGCGATCATTA
gi|11 : aaacattaaaatattcatttatatttaaagaaatatgttctccttttatatagatgtaaattttgaaggatagtataccaaaataccctttttacatttaatgtacaagcagttagcatcatacgctatacTTTCATTATTCTTGT-CATTTTAAATGTGCTA--TTA---ATATC-ATCCTAGCCTGTAT----CATTG---ATTTTTACCCTGAattacgaagaatt
gi|12 : cataatattttatctgatatggatacctgcatttaaattgtatTTCATAATTCTTGT-CATTT-AA-TATGCTAGCTTATTTATAGC-ACCCT-----GCAT----CATTG---ATTTTTATCCTGAA
gi|13 : ttagattatacttgatataattatctaatttataaTTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|14 : gtataatattttacctaatattgaatttataTTTCATTATTCTTGT-CATTTTAA--ATGATA--TC-----TTTCTAGCCT-----GTATATATCATTG---ATTTTTACCCTGAAT
gi|16 : ggatttgtatTCATTATTCTT---CATTTTAA-TGTTCTA--TTA---ATATC-ACCCT-----G
gi|17 : aatcgaacttatacttgaTGCC-TCCAACTGTCCAGAAAATTGTCTTTCTATTGGCTGGGT
gi|19 : CAATAGTGGCTTCCA-TTTCAATATGTGAGA
gi|2 : TTTCATTATTCTTGTTCATTTTAA-TGTGCTA--TTA---ATATC-A------------T----CAT-----ATTTTTACC-TGAATAAATCT---------ATCTATCAGATAATATTACAACA-A-TGAACACTA-TGCAATGAATAT--TGAT-CTAT-TTTACAGAATTAAC-TATCCTAAAGATT-AAGTCATTGGTAGTTTGT----GA--TGGGTCCTAT-GAATGGCAATATTCGA--CTATAAA-CTTTCAGAGTTAAAATCTTGACACATTCATA---------CCCACGGCTTGAAGCTTCACTGGG-AATGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTT-GATATGCGAGAGTTCT--GAGATG---TCGC---AAATCTTT-TGTAACTG-T-TAA-CGTATC--AAAGCAATGTCCAC--AATA------AA-TCTTTA-TAAACTCCATTCTCTTCCACACCG----------------------------------TTGTGTCACCATTTTGAAGGAGATTGCC-TCCAACTGTCCCGAAATTTCT-TTTCCATTGGCTGAGTCTTCTACATGATT-AAATAATTA
gi|3 : CAAAACGATCA---CACATT-CA-CATAATGAACACTAAGGTAACAAATATAATTATATCA-GTCTACAGTATGAAC-TATACTAAGAATT-AATTCAGTGGTACCTGGTAGTGGAATTGGGCCTCAT-GAATGCCAATGTTCAAG-CTACAAACCTTTCAAAGTT----TC------CATTCG--------------ACGTC-T-----TCC----GG-AAAGAAAACCCT-TTCCACAATAGTGTCTTCCA---TCAGTAGTCGCGAATTGT--TAAATG---TTGCC--AAATC-TT-TGTAGCTG-TCTCA-CGTATC--AAAGCAATGCCCACAAAACAAAGTTTAAGCCTTTA-TAAGCTCC-TTC-ATTCCACACAGAAGATAAAA--TGGCGAAGTAAACAATGTTTAAT-TGTATCGCCA-----AAGGAGATTGCCGTCCAACTGTCCAGACATTTCTCTTTCCATTGGCTAG--TTGCTGCATGA-T-AAATGATTA
gi|4 : aaaaaccaaaccGAACACTA-TGTAACGAATAT--CTA--ACATGTCTACAGAATGAAA-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----AAATTGGGCCattacgaagaac
gi|5 : acataaaatatatcatttgtagcattgaagaaatatgttttcctttgaatattgtaaattttgaaggatagtctaccaaaataccttttacacatgtacaagcagtacagacatcatcgctatagcatccagtaaacattgaataaaaactatcaTTTCATTATTCTTGT-CATTT-AA-TGTGGTA--TTT---AAATC-ACCCT-----GTAT----CATTGATTATTTTTATCCTGAATAGAT
gi|6 : gccccattagaaataagcaccagtattttcaagggctatcattaggtgtaaatcaatcattctatatatgtctaattctataatttacatacatttatatgtaatattttaagattgtacttggtatggatatctgaatctataTTTCATTATTTTTGT-CATTTTAA-TGTGCTA--TTA---ATATT-ACCCT-----GAAT----
gi|7 : ccccattgaaaataagcaccagtgctttcatgggatatccttaggtgtaaatccatgatgcatttgtatttcattttatgttaactttataaatatgtctagtcttatgatttgcataatattttaccaggtatggatatctgcttttgaatttataTCATTATTCTTGT-CTTTTTAG-TATGCTA--TTG---ATATC-ACCCT-----GTAT----CATTG---ATTCTTACCCTGAATAAAaaatctatc
gi|8 : aaggaccccattggaaatatatgggctatcaatgatatttcattttatgtttataaatatatgactagtcgatattttaaaattgtacctgatatggatatctgaatttatatgTTTTATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|9 : catttgtatttcattttatgttaatgtctagtcttgtgatttgcataatattttacctgatatggatatctgcatttgaatttataCAAAGTTCAAATCTTGACACATTCATA---------CCCACGGCATGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGGCTTCCA-TTTCAATATGTGAGAATTCT--GAGATG---TCGTT--AAATC-TT-TGAAACTG-T-TCA-CCTATC--AAAGTAATGTCCAC--AA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTCAACATAAAATATATCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCACCCAAAATACCTTTTACATATACAAGCAGTACAGGCATCATCGCTATAGCATCCAGTACT
Unaligned ( gi|15 ): TAAATGTACAACAGTACAGGCATCATCGCTACAGCATCCAGTAAATTGAACTTAAGAACATCTATTGGAAC
Unaligned ( gi|18 ): GGAAGTCAACATAAAATATATCATTTGTAACA
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 11111 333333 1 111 11 111 1 1 222222222 1 11 2222 1 33333 44444444444 22 1 111 111 111 222 1 1 111 1 11 11 333333 1 11 333333333333333333333333333333333333 3333333 1 1111
lowQualScore : 4 0 4 55 777 4 00000 9999 888 1 000000 6 7 7 3 7 000 33 333 55 9 8 0 3 0 0 1 666666666 6 3 11 1111 3 2 55555 3 00000000000 22 2 3 0 111 0 88 0 444 777 000 0 0 111 0 33 33 888888 6 3 44 7 444444444444444444444444444444444444 7777777 0 2 4 0 55 2 3333 1
lowQualScore : . . . .. ... . ..... .... ... . ...... . . . . . ... .. ... .. . . . . . . . ......... . . .. .... . . ..... . ........... .. . . . ... . .. . ... ... ... . . ... . .. .. ...... . . .. . .................................... ....... . . . . .. . .... .
lowQualScore : 0 8 0 55 000 0 00000 4444 888 0 555555 7 3 3 3 3 222 88 555 88 8 8 0 2 2 0 2 888888888 5 3 00 7777 3 5 22222 2 22222222222 55 5 2 0 000 6 88 2 000 555 888 0 0 000 0 88 88 333333 7 3 77 3 777777777777777777777777777777777777 7777777 0 5 2 2 88 5 7777 0
consensus : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACAC--------------CGA---CG-AC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
Reference ( family-2031 ) : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACAC--------------CGA---TGCAC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
gi|1 : AGTAAACATTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACAC---TGTAACGAATAC--CTAT-CCATGTCTACAG-AT-AACGTATCC----AATTAAAGTCAATGGAAGTTGGT----GA--TGGG-CCTATAGAATGGCAA--TTCGA-CTTTACAAAC-TTCCAAA---------TTTGACACATACATATGAAGCTTCCCCACGG---GAAGCTTCACTGGGAAAAGGAAGTC-TATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATC-TTATGTAACTGTT-TCATCGTATTCAAAAATAATATTCAA--AACA------AAGCCTTTATTAAAGTCAA-TCTCTTCCACAC--------------CGACTTCGCAC-ATGTTTAATCTGTGTCGCCA-----ATAGGAGATTGCT-TCCAACC-TAAGAAAATTATTC-TTCCATTGGCTGGGTCTTCTGCATGA-TGCGATCATTA
gi|11 : aaacattaaaatattcatttatatttaaagaaatatgttctccttttatatagatgtaaattttgaaggatagtataccaaaataccctttttacatttaatgtacaagcagttagcatcatacgctatacTTTCATTATTCTTGT-CATTTTAAATGTGCTA--TTA---ATATC-ATCCTAGCCTGTAT----CATTG---ATTTTTACCCTGAattacgaagaatt
gi|12 : cataatattttatctgatatggatacctgcatttaaattgtatTTCATAATTCTTGT-CATTT-AA-TATGCTAGCTTATTTATAGC-ACCCT-----GCAT----CATTG---ATTTTTATCCTGAA
gi|13 : ttagattatacttgatataattatctaatttataaTTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|14 : gtataatattttacctaatattgaatttataTTTCATTATTCTTGT-CATTTTAA--ATGATA--TC-----TTTCTAGCCT-----GTATATATCATTG---ATTTTTACCCTGAAT
gi|16 : ggatttgtatTCATTATTCTT---CATTTTAA-TGTTCTA--TTA---ATATC-ACCCT-----G
gi|17 : aatcgaacttatacttgaTGCC-TCCAACTGTCCAGAAAATTGTCTTTCTATTGGCTGGGT
gi|19 : CAATAGTGGCTTCCA-TTTCAATATGTGAGA
gi|2 : TTTCATTATTCTTGTTCATTTTAA-TGTGCTA--TTA---ATATC-A------------T----CAT-----ATTTTTACC-TGAATAAATCT---------ATCTATCAGATAATATTACAACA-A-TGAACACTA-TGCAATGAATAT--TGAT-CTAT-TTTACAGAATTAAC-TATCCTAAAGATT-AAGTCATTGGTAGTTTGT----GA--TGGGTCCTAT-GAATGGCAATATTCGA-C--TATAAAC-TTTCAGAGTT-AAAATCTTGACACATTCATA---------CCCACGGCTTGAAGCTTCACTGGG-AATGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTT-GATATGCGAGAGTTCT--GAGATG---TCGC---AAATCTTT-TGTAACTG-T-TAA-CGTATC--AAAGCAATGTCCAC--AATA------AA-TCTTTA-TAAACTCCATTCTCTTCCACAC--------------CG-------------------TTGTGTCACCATTTTGA-AGGAGATTGCC-TCCAACTGTCCCGAAATTTCT-TTTCCATTGGCTGAGTCTTCTACATGATTA-AATAATTA
gi|3 : CAAAACGATCA---CACATT-CA-CATAATGAACACTAAGGTAACAAATATAATTATATCA-GTCTACAGTATGAAC-TATACTAAGAATT-AATTCAGTGGTACCTGGTAGTGGAATTGGGCCTCAT-GAATGCCAATGTTCAAGC--TACAAACCTTTCAAAGTT-----TC------CATTCG--------------ACGTC-T-----TCC----GG-AAAGAAAACCCT-TTCCACAATAGTGTCTTCCA---TCAGTAGTCGCGAATTGT--TAAATG---TTGCC--AAATC-TT-TGTAGCTG-TCTCA-CGTATC--AAAGCAATGCCCACAAAACAAAGTTTAAGCCTTTA-TAAGCTCC-TTC-ATTCCACACAGAAGATAAAATGGCGAAG-TAAACAATGTTTAAT-TGTATCGCCA-----A-AGGAGATTGCCGTCCAACTGTCCAGACATTTCTCTTTCCATTGGCTAG--TTGCTGCATGA-TA-AATGATTA
gi|4 : aaaaaccaaaccGAACACTA-TGTAACGAATAT--CTA--ACATGTCTACAGAATGAAA-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----AAATTGGGCCattacgaagaac
gi|5 : acataaaatatatcatttgtagcattgaagaaatatgttttcctttgaatattgtaaattttgaaggatagtctaccaaaataccttttacacatgtacaagcagtacagacatcatcgctatagcatccagtaaacattgaataaaaactatcaTTTCATTATTCTTGT-CATTT-AA-TGTGGTA--TTT---AAATC-ACCCT-----GTAT----CATTGATTATTTTTATCCTGAATAGAT
gi|6 : gccccattagaaataagcaccagtattttcaagggctatcattaggtgtaaatcaatcattctatatatgtctaattctataatttacatacatttatatgtaatattttaagattgtacttggtatggatatctgaatctataTTTCATTATTTTTGT-CATTTTAA-TGTGCTA--TTA---ATATT-ACCCT-----GAAT----
gi|7 : ccccattgaaaataagcaccagtgctttcatgggatatccttaggtgtaaatccatgatgcatttgtatttcattttatgttaactttataaatatgtctagtcttatgatttgcataatattttaccaggtatggatatctgcttttgaatttataTCATTATTCTTGT-CTTTTTAG-TATGCTA--TTG---ATATC-ACCCT-----GTAT----CATTG---ATTCTTACCCTGAATAAAaaatctatc
gi|8 : aaggaccccattggaaatatatgggctatcaatgatatttcattttatgtttataaatatatgactagtcgatattttaaaattgtacctgatatggatatctgaatttatatgTTTTATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|9 : catttgtatttcattttatgttaatgtctagtcttgtgatttgcataatattttacctgatatggatatctgcatttgaatttataCAAAGTTCAAA-TCTTGACACATTCATA---------CCCACGGCATGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGGCTTCCA-TTTCAATATGTGAGAATTCT--GAGATG---TCGTT--AAATC-TT-TGAAACTG-T-TCA-CCTATC--AAAGTAATGTCCAC--AA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTCAACATAAAATATATCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCACCCAAAATACCTTTTACATATACAAGCAGTACAGGCATCATCGCTATAGCATCCAGTACT
Unaligned ( gi|15 ): TAAATGTACAACAGTACAGGCATCATCGCTACAGCATCCAGTAAATTGAACTTAAGAACATCTATTGGAAC
Unaligned ( gi|18 ): GGAAGTCAACATAAAATATATCATTTGTAACA
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11111 333333 1 111 11 111 1 1 222222222 1 11 2222 1 33333 44444444444 22 1 111 111 111 222 1 1 111 1 11 11 333333 1 11 555555555555555555555555555555555 3333333 1 1111
lowQualScore : 4 0 4 55 777 4 00000 9999 888 1 000000 6 7 7 3 7 000 33 333 55 9 8 0 3 0 0 1 666666666 6 3 11 1111 3 2 55555 3 00000000000 22 2 3 0 111 0 88 0 444 777 000 0 0 111 0 33 33 888888 6 3 44 7 555555555555555555555555555555555 7777777 0 2 4 0 55 2 3333 1
lowQualScore : . . . .. ... . ..... .... ... . ...... . . . . . ... .. ... .. . . . . . . . ......... . . .. .... . . ..... . ........... .. . . . ... . .. . ... ... ... . . ... . .. .. ...... . . .. . ................................. ....... . . . . .. . .... .
lowQualScore : 0 8 0 55 000 0 00000 4444 888 0 555555 7 3 3 3 3 222 88 555 88 8 8 0 2 2 0 2 888888888 5 3 00 7777 3 5 22222 2 22222222222 55 5 2 0 000 6 88 2 000 555 888 0 0 000 0 88 88 333333 7 3 77 3 333333333333333333333333333333333 7777777 0 5 2 2 88 5 7777 0
consensus : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACACCGA-----------CG------AC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
Reference ( family-2031 ) : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACACCGA-----------CG------AC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
gi|1 : AGTAAACATTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACAC---TGTAACGAATAC--CTAT-CCATGTCTACAG-AT-AACGTATCC----AATTAAAGTCAATGGAAGTTGGT----GA--TGGG-CCTATAGAATGGCAA--TTCGA-CTTTACAAAC-TTCCAAA---------TTTGACACATACATATGAAGCTTCCCCACGG---GAAGCTTCACTGGGAAAAGGAAGTC-TATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATC-TTATGTAACTGTT-TCATCGTATTCAAAAATAATATTCAA--AACA------AAGCCTTTATTAAAGTCAA-TCTCTTCCACACCGACTT--------CGC-----AC-ATGTTTAATCTGTGTCGCCA-----ATAGGAGATTGCT-TCCAACC-TAAGAAAATTATTC-TTCCATTGGCTGGGTCTTCTGCATGA-TGCGATCATTA
gi|11 : aaacattaaaatattcatttatatttaaagaaatatgttctccttttatatagatgtaaattttgaaggatagtataccaaaataccctttttacatttaatgtacaagcagttagcatcatacgctatacTTTCATTATTCTTGT-CATTTTAAATGTGCTA--TTA---ATATC-ATCCTAGCCTGTAT----CATTG---ATTTTTACCCTGAattacgaagaatt
gi|12 : cataatattttatctgatatggatacctgcatttaaattgtatTTCATAATTCTTGT-CATTT-AA-TATGCTAGCTTATTTATAGC-ACCCT-----GCAT----CATTG---ATTTTTATCCTGAA
gi|13 : ttagattatacttgatataattatctaatttataaTTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|14 : gtataatattttacctaatattgaatttataTTTCATTATTCTTGT-CATTTTAA--ATGATA--TC-----TTTCTAGCCT-----GTATATATCATTG---ATTTTTACCCTGAAT
gi|16 : ggatttgtatTCATTATTCTT---CATTTTAA-TGTTCTA--TTA---ATATC-ACCCT-----G
gi|17 : aatcgaacttatacttgaTGCC-TCCAACTGTCCAGAAAATTGTCTTTCTATTGGCTGGGT
gi|19 : CAATAGTGGCTTCCA-TTTCAATATGTGAGA
gi|2 : TTTCATTATTCTTGTTCATTTTAA-TGTGCTA--TTA---ATATC-A------------T----CAT-----ATTTTTACC-TGAATAAATCT---------ATCTATCAGATAATATTACAACA-A-TGAACACTA-TGCAATGAATAT--TGAT-CTAT-TTTACAGAATTAAC-TATCCTAAAGATT-AAGTCATTGGTAGTTTGT----GA--TGGGTCCTAT-GAATGGCAATATTCGA-C--TATAAAC-TTTCAGAGTT-AAAATCTTGACACATTCATA---------CCCACGGCTTGAAGCTTCACTGGG-AATGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTT-GATATGCGAGAGTTCT--GAGATG---TCGC---AAATCTTT-TGTAACTG-T-TAA-CGTATC--AAAGCAATGTCCAC--AATA------AA-TCTTTA-TAAACTCCATTCTCTTCCACACCG--------------------------------TTGTGTCACCATTTTGA-AGGAGATTGCC-TCCAACTGTCCCGAAATTTCT-TTTCCATTGGCTGAGTCTTCTACATGATTA-AATAATTA
gi|3 : CAAAACGATCA---CACATT-CA-CATAATGAACACTAAGGTAACAAATATAATTATATCA-GTCTACAGTATGAAC-TATACTAAGAATT-AATTCAGTGGTACCTGGTAGTGGAATTGGGCCTCAT-GAATGCCAATGTTCAAGC--TACAAACCTTTCAAAGTT-----TC------CATTCG--------------ACGTC-T-----TCC----GG-AAAGAAAACCCT-TTCCACAATAGTGTCTTCCA---TCAGTAGTCGCGAATTGT--TAAATG---TTGCC--AAATC-TT-TGTAGCTG-TCTCA-CGTATC--AAAGCAATGCCCACAAAACAAAGTTTAAGCCTTTA-TAAGCTCC-TTC-ATTCCACACAGAAGATAAAATGGCGAAGTAAACAATGTTTAAT-TGTATCGCCA-----A-AGGAGATTGCCGTCCAACTGTCCAGACATTTCTCTTTCCATTGGCTAG--TTGCTGCATGA-TA-AATGATTA
gi|4 : aaaaaccaaaccGAACACTA-TGTAACGAATAT--CTA--ACATGTCTACAGAATGAAA-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----AAATTGGGCCattacgaagaac
gi|5 : acataaaatatatcatttgtagcattgaagaaatatgttttcctttgaatattgtaaattttgaaggatagtctaccaaaataccttttacacatgtacaagcagtacagacatcatcgctatagcatccagtaaacattgaataaaaactatcaTTTCATTATTCTTGT-CATTT-AA-TGTGGTA--TTT---AAATC-ACCCT-----GTAT----CATTGATTATTTTTATCCTGAATAGAT
gi|6 : gccccattagaaataagcaccagtattttcaagggctatcattaggtgtaaatcaatcattctatatatgtctaattctataatttacatacatttatatgtaatattttaagattgtacttggtatggatatctgaatctataTTTCATTATTTTTGT-CATTTTAA-TGTGCTA--TTA---ATATT-ACCCT-----GAAT----
gi|7 : ccccattgaaaataagcaccagtgctttcatgggatatccttaggtgtaaatccatgatgcatttgtatttcattttatgttaactttataaatatgtctagtcttatgatttgcataatattttaccaggtatggatatctgcttttgaatttataTCATTATTCTTGT-CTTTTTAG-TATGCTA--TTG---ATATC-ACCCT-----GTAT----CATTG---ATTCTTACCCTGAATAAAaaatctatc
gi|8 : aaggaccccattggaaatatatgggctatcaatgatatttcattttatgtttataaatatatgactagtcgatattttaaaattgtacctgatatggatatctgaatttatatgTTTTATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|9 : catttgtatttcattttatgttaatgtctagtcttgtgatttgcataatattttacctgatatggatatctgcatttgaatttataCAAAGTTCAAA-TCTTGACACATTCATA---------CCCACGGCATGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGGCTTCCA-TTTCAATATGTGAGAATTCT--GAGATG---TCGTT--AAATC-TT-TGAAACTG-T-TCA-CCTATC--AAAGTAATGTCCAC--AA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTCAACATAAAATATATCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCACCCAAAATACCTTTTACATATACAAGCAGTACAGGCATCATCGCTATAGCATCCAGTACT
Unaligned ( gi|15 ): TAAATGTACAACAGTACAGGCATCATCGCTACAGCATCCAGTAAATTGAACTTAAGAACATCTATTGGAAC
Unaligned ( gi|18 ): GGAAGTCAACATAAAATATATCATTTGTAACA
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11111 333333 1 111 11 111 1 1 222222222 1 11 2222 1 33333 44444444444 22 1 111 111 111 222 1 1 111 1 11 11 333333 1 11 555555555555555555555555555555555 3333333 1 1111
lowQualScore : 4 0 4 55 777 4 00000 9999 888 1 000000 6 7 7 3 7 000 33 333 55 9 8 0 3 0 0 1 666666666 6 3 11 1111 3 2 55555 3 00000000000 22 2 3 0 111 0 88 0 444 777 000 0 0 111 0 33 33 888888 6 3 44 7 555555555555555555555555555555555 7777777 0 2 4 0 55 2 3333 1
lowQualScore : . . . .. ... . ..... .... ... . ...... . . . . . ... .. ... .. . . . . . . . ......... . . .. .... . . ..... . ........... .. . . . ... . .. . ... ... ... . . ... . .. .. ...... . . .. . ................................. ....... . . . . .. . .... .
lowQualScore : 0 8 0 55 000 0 00000 4444 888 0 555555 7 3 3 3 3 222 88 555 88 8 8 0 2 2 0 2 888888888 5 3 00 7777 3 5 22222 2 22222222222 55 5 2 0 000 6 88 2 000 555 888 0 0 000 0 88 88 333333 7 3 77 3 333333333333333333333333333333333 7777777 0 5 2 2 88 5 7777 0
consensus : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACACCGA-----------CG------AC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
Reference ( family-2031 ) : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACACCGA-----------CG------AC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
gi|1 : AGTAAACATTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACAC---TGTAACGAATAC--CTAT-CCATGTCTACAG-AT-AACGTATCC----AATTAAAGTCAATGGAAGTTGGT----GA--TGGG-CCTATAGAATGGCAA--TTCGA-CTTTACAAAC-TTCCAAA---------TTTGACACATACATATGAAGCTTCCCCACGG---GAAGCTTCACTGGGAAAAGGAAGTC-TATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATC-TTATGTAACTGTT-TCATCGTATTCAAAAATAATATTCAA--AACA------AAGCCTTTATTAAAGTCAA-TCTCTTCCACACCGACTT--------CGC-----AC-ATGTTTAATCTGTGTCGCCA-----ATAGGAGATTGCT-TCCAACC-TAAGAAAATTATTC-TTCCATTGGCTGGGTCTTCTGCATGA-TGCGATCATTA
gi|11 : aaacattaaaatattcatttatatttaaagaaatatgttctccttttatatagatgtaaattttgaaggatagtataccaaaataccctttttacatttaatgtacaagcagttagcatcatacgctatacTTTCATTATTCTTGT-CATTTTAAATGTGCTA--TTA---ATATC-ATCCTAGCCTGTAT----CATTG---ATTTTTACCCTGAattacgaagaatt
gi|12 : cataatattttatctgatatggatacctgcatttaaattgtatTTCATAATTCTTGT-CATTT-AA-TATGCTAGCTTATTTATAGC-ACCCT-----GCAT----CATTG---ATTTTTATCCTGAA
gi|13 : ttagattatacttgatataattatctaatttataaTTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|14 : gtataatattttacctaatattgaatttataTTTCATTATTCTTGT-CATTTTAA--ATGATA--TC-----TTTCTAGCCT-----GTATATATCATTG---ATTTTTACCCTGAAT
gi|16 : ggatttgtatTCATTATTCTT---CATTTTAA-TGTTCTA--TTA---ATATC-ACCCT-----G
gi|17 : aatcgaacttatacttgaTGCC-TCCAACTGTCCAGAAAATTGTCTTTCTATTGGCTGGGT
gi|19 : CAATAGTGGCTTCCA-TTTCAATATGTGAGA
gi|2 : TTTCATTATTCTTGTTCATTTTAA-TGTGCTA--TTA---ATATC-A------------T----CAT-----ATTTTTACC-TGAATAAATCT---------ATCTATCAGATAATATTACAACA-A-TGAACACTA-TGCAATGAATAT--TGAT-CTAT-TTTACAGAATTAAC-TATCCTAAAGATT-AAGTCATTGGTAGTTTGT----GA--TGGGTCCTAT-GAATGGCAATATTCGA-C--TATAAAC-TTTCAGAGTT-AAAATCTTGACACATTCATA---------CCCACGGCTTGAAGCTTCACTGGG-AATGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTT-GATATGCGAGAGTTCT--GAGATG---TCGC---AAATCTTT-TGTAACTG-T-TAA-CGTATC--AAAGCAATGTCCAC--AATA------AA-TCTTTA-TAAACTCCATTCTCTTCCACACCG--------------------------------TTGTGTCACCATTTTGA-AGGAGATTGCC-TCCAACTGTCCCGAAATTTCT-TTTCCATTGGCTGAGTCTTCTACATGATTA-AATAATTA
gi|3 : CAAAACGATCA---CACATT-CA-CATAATGAACACTAAGGTAACAAATATAATTATATCA-GTCTACAGTATGAAC-TATACTAAGAATT-AATTCAGTGGTACCTGGTAGTGGAATTGGGCCTCAT-GAATGCCAATGTTCAAGC--TACAAACCTTTCAAAGTT-----TC------CATTCG--------------ACGTC-T-----TCC----GG-AAAGAAAACCCT-TTCCACAATAGTGTCTTCCA---TCAGTAGTCGCGAATTGT--TAAATG---TTGCC--AAATC-TT-TGTAGCTG-TCTCA-CGTATC--AAAGCAATGCCCACAAAACAAAGTTTAAGCCTTTA-TAAGCTCC-TTC-ATTCCACACAGAAGATAAAATGGCGAAGTAAACAATGTTTAAT-TGTATCGCCA-----A-AGGAGATTGCCGTCCAACTGTCCAGACATTTCTCTTTCCATTGGCTAG--TTGCTGCATGA-TA-AATGATTA
gi|4 : aaaaaccaaaccGAACACTA-TGTAACGAATAT--CTA--ACATGTCTACAGAATGAAA-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----AAATTGGGCCattacgaagaac
gi|5 : acataaaatatatcatttgtagcattgaagaaatatgttttcctttgaatattgtaaattttgaaggatagtctaccaaaataccttttacacatgtacaagcagtacagacatcatcgctatagcatccagtaaacattgaataaaaactatcaTTTCATTATTCTTGT-CATTT-AA-TGTGGTA--TTT---AAATC-ACCCT-----GTAT----CATTGATTATTTTTATCCTGAATAGAT
gi|6 : gccccattagaaataagcaccagtattttcaagggctatcattaggtgtaaatcaatcattctatatatgtctaattctataatttacatacatttatatgtaatattttaagattgtacttggtatggatatctgaatctataTTTCATTATTTTTGT-CATTTTAA-TGTGCTA--TTA---ATATT-ACCCT-----GAAT----
gi|7 : ccccattgaaaataagcaccagtgctttcatgggatatccttaggtgtaaatccatgatgcatttgtatttcattttatgttaactttataaatatgtctagtcttatgatttgcataatattttaccaggtatggatatctgcttttgaatttataTCATTATTCTTGT-CTTTTTAG-TATGCTA--TTG---ATATC-ACCCT-----GTAT----CATTG---ATTCTTACCCTGAATAAAaaatctatc
gi|8 : aaggaccccattggaaatatatgggctatcaatgatatttcattttatgtttataaatatatgactagtcgatattttaaaattgtacctgatatggatatctgaatttatatgTTTTATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|9 : catttgtatttcattttatgttaatgtctagtcttgtgatttgcataatattttacctgatatggatatctgcatttgaatttataCAAAGTTCAAA-TCTTGACACATTCATA---------CCCACGGCATGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGGCTTCCA-TTTCAATATGTGAGAATTCT--GAGATG---TCGTT--AAATC-TT-TGAAACTG-T-TCA-CCTATC--AAAGTAATGTCCAC--AA
blockSeqs : T . GC TTT T . ATAT ATT C . G A A T A TAA AA TAT TG A T . T . T TAGTGGAAT T . TA GC C G AAAA T TA CT G A . CT T G . C T . TC . . AA AAGTTT G . AT T AAGATAAAATGGCGAAGTAAACAATGTTTAAT TTTTGA G G A CT G TTA A
blockSeqs : . . . . . . . . . . . . . TA . TC T T G . T . G CAAAT C . TG C . G CAAA T TA CA G A . T T T . T . . T . . . . . . T . T A . G C CT G TA G
blockSeqs : . . . . . . . . TA . A G A G . T . A TGA C G . . . C . . . T T G . . . . T . . . . G A T .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ***** T*
originalCons : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACACCGA-----------CG------AC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
finalCons : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCAT-TTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACACCGA-----------CG------AC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTCAACATAAAATATATCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCACCCAAAATACCTTTTACATATACAAGCAGTACAGGCATCATCGCTATAGCATCCAGTACT
Unaligned ( gi|15 ): TAAATGTACAACAGTACAGGCATCATCGCTACAGCATCCAGTAAATTGAACTTAAGAACATCTATTGGAAC
Unaligned ( gi|18 ): GGAAGTCAACATAAAATATATCATTTGTAACA
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11111 333333 1 111 11 111 1 1 222222222 1 11 2222 1 33333 44444444444 22 1 111 111 111 222 1 1 111 1 11 11 333333 1 11 555555555555555555555555555555555 3333333 1 1111
lowQualScore : 4 0 4 55 777 4 00000 9999 888 1 000000 6 7 7 3 7 000 33 333 55 9 8 0 3 0 0 1 666666666 6 3 11 1111 3 2 55555 3 00000000000 22 2 3 0 111 0 88 0 444 777 000 0 0 111 0 33 33 888888 6 3 44 7 555555555555555555555555555555555 7777777 0 2 4 0 55 2 3333 1
lowQualScore : . . . .. ... . ..... .... ... . ...... . . . . . ... .. ... .. . . . . . . . ......... . . .. .... . . ..... . ........... .. . . . ... . .. . ... ... ... . . ... . .. .. ...... . . .. . ................................. ....... . . . . .. . .... .
lowQualScore : 0 8 0 55 000 0 00000 4444 888 0 555555 7 3 3 3 3 222 88 555 88 8 8 0 2 2 0 2 888888888 5 3 00 7777 3 5 22222 2 22222222222 55 5 2 0 000 6 88 2 000 555 888 0 0 000 0 88 88 333333 7 3 77 3 333333333333333333333333333333333 7777777 0 5 2 2 88 5 7777 0
consensus : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACACCGA-----------CG------AC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
Reference ( family-2031 ) : TTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAATNTTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACACTA-TGTAACGAATAT--CTAT-CCATGTCTACAGAATGAAC-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----GAATTGGGCCCTAT-GAATGGCAATGTTCGA-C--TACAAAC-TTTCAAAGTT-AAA-TCTTGACACATTCATA---------CCCACGGC-TGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTTCAATATGCGAGAATTCT--GAGATG---TCGCT--AAATC-TT-TGTAACTG-T-TCA-CGTATC--AAAGCAATGTCCAC--AACA------AAGCCTTTA-TAAACTCCATTCTCTTCCACACCGA-----------CG------AC-ATGTTTAATCTGTGTCGCCA-----A-AGGAGATTGCC-TCCAACTGTCCGGAAATTTCTCTTTCCATTGGCTGGGTCTTCTGCATGA-TA-AATNATTA
gi|1 : AGTAAACATTAAAAACAAATCTATCAGATCACATTACAACA-AATGAACAC---TGTAACGAATAC--CTAT-CCATGTCTACAG-AT-AACGTATCC----AATTAAAGTCAATGGAAGTTGGT----GA--TGGG-CCTATAGAATGGCAA--TTCGA-CTTTACAAAC-TTCCAAA---------TTTGACACATACATATGAAGCTTCCCCACGG---GAAGCTTCACTGGGAAAAGGAAGTC-TATTCCACAATAGTGTCTTCCATTTTCAATATGTCGGAATTTTTGAAGATGAGCTCGCTAAAAATC-TTATGTAACTGTT-TCATCGTATTCAAAAATAATATTCAA--AACA------AAGCCTTTATTAAAGTCAA-TCTCTTCCACACCGACTT--------CGC-----AC-ATGTTTAATCTGTGTCGCCA-----ATAGGAGATTGCT-TCCAACC-TAAGAAAATTATTC-TTCCATTGGCTGGGTCTTCTGCATGA-TGCGATCATTA
gi|11 : aaacattaaaatattcatttatatttaaagaaatatgttctccttttatatagatgtaaattttgaaggatagtataccaaaataccctttttacatttaatgtacaagcagttagcatcatacgctatacTTTCATTATTCTTGT-CATTTTAAATGTGCTA--TTA---ATATC-ATCCTAGCCTGTAT----CATTG---ATTTTTACCCTGAattacgaagaatt
gi|12 : cataatattttatctgatatggatacctgcatttaaattgtatTTCATAATTCTTGT-CATTT-AA-TATGCTAGCTTATTTATAGC-ACCCT-----GCAT----CATTG---ATTTTTATCCTGAA
gi|13 : ttagattatacttgatataattatctaatttataaTTTCATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|14 : gtataatattttacctaatattgaatttataTTTCATTATTCTTGT-CATTTTAA--ATGATA--TC-----TTTCTAGCCT-----GTATATATCATTG---ATTTTTACCCTGAAT
gi|16 : ggatttgtatTCATTATTCTT---CATTTTAA-TGTTCTA--TTA---ATATC-ACCCT-----G
gi|17 : aatcgaacttatacttgaTGCC-TCCAACTGTCCAGAAAATTGTCTTTCTATTGGCTGGGT
gi|19 : CAATAGTGGCTTCCA-TTTCAATATGTGAGA
gi|2 : TTTCATTATTCTTGTTCATTTTAA-TGTGCTA--TTA---ATATC-A------------T----CAT-----ATTTTTACC-TGAATAAATCT---------ATCTATCAGATAATATTACAACA-A-TGAACACTA-TGCAATGAATAT--TGAT-CTAT-TTTACAGAATTAAC-TATCCTAAAGATT-AAGTCATTGGTAGTTTGT----GA--TGGGTCCTAT-GAATGGCAATATTCGA-C--TATAAAC-TTTCAGAGTT-AAAATCTTGACACATTCATA---------CCCACGGCTTGAAGCTTCACTGGG-AATGGAAGCC-T-TTCCACAATAGTGTCTTCCA-TTT-GATATGCGAGAGTTCT--GAGATG---TCGC---AAATCTTT-TGTAACTG-T-TAA-CGTATC--AAAGCAATGTCCAC--AATA------AA-TCTTTA-TAAACTCCATTCTCTTCCACACCG--------------------------------TTGTGTCACCATTTTGA-AGGAGATTGCC-TCCAACTGTCCCGAAATTTCT-TTTCCATTGGCTGAGTCTTCTACATGATTA-AATAATTA
gi|3 : CAAAACGATCA---CACATT-CA-CATAATGAACACTAAGGTAACAAATATAATTATATCA-GTCTACAGTATGAAC-TATACTAAGAATT-AATTCAGTGGTACCTGGTAGTGGAATTGGGCCTCAT-GAATGCCAATGTTCAAGC--TACAAACCTTTCAAAGTT-----TC------CATTCG--------------ACGTC-T-----TCC----GG-AAAGAAAACCCT-TTCCACAATAGTGTCTTCCA---TCAGTAGTCGCGAATTGT--TAAATG---TTGCC--AAATC-TT-TGTAGCTG-TCTCA-CGTATC--AAAGCAATGCCCACAAAACAAAGTTTAAGCCTTTA-TAAGCTCC-TTC-ATTCCACACAGAAGATAAAATGGCGAAGTAAACAATGTTTAAT-TGTATCGCCA-----A-AGGAGATTGCCGTCCAACTGTCCAGACATTTCTCTTTCCATTGGCTAG--TTGCTGCATGA-TA-AATGATTA
gi|4 : aaaaaccaaaccGAACACTA-TGTAACGAATAT--CTA--ACATGTCTACAGAATGAAA-TATCCTAAGAATT-AAGTCAATGGTAGTTGGC----AAATTGGGCCattacgaagaac
gi|5 : acataaaatatatcatttgtagcattgaagaaatatgttttcctttgaatattgtaaattttgaaggatagtctaccaaaataccttttacacatgtacaagcagtacagacatcatcgctatagcatccagtaaacattgaataaaaactatcaTTTCATTATTCTTGT-CATTT-AA-TGTGGTA--TTT---AAATC-ACCCT-----GTAT----CATTGATTATTTTTATCCTGAATAGAT
gi|6 : gccccattagaaataagcaccagtattttcaagggctatcattaggtgtaaatcaatcattctatatatgtctaattctataatttacatacatttatatgtaatattttaagattgtacttggtatggatatctgaatctataTTTCATTATTTTTGT-CATTTTAA-TGTGCTA--TTA---ATATT-ACCCT-----GAAT----
gi|7 : ccccattgaaaataagcaccagtgctttcatgggatatccttaggtgtaaatccatgatgcatttgtatttcattttatgttaactttataaatatgtctagtcttatgatttgcataatattttaccaggtatggatatctgcttttgaatttataTCATTATTCTTGT-CTTTTTAG-TATGCTA--TTG---ATATC-ACCCT-----GTAT----CATTG---ATTCTTACCCTGAATAAAaaatctatc
gi|8 : aaggaccccattggaaatatatgggctatcaatgatatttcattttatgtttataaatatatgactagtcgatattttaaaattgtacctgatatggatatctgaatttatatgTTTTATTATTCTTGT-CATTTTAA-TGTGCTA--TTA---ATATC-ACCCT-----GTAT----CATTG---ATTTTTACCCTGAATAAAT
gi|9 : catttgtatttcattttatgttaatgtctagtcttgtgatttgcataatattttacctgatatggatatctgcatttgaatttataCAAAGTTCAAA-TCTTGACACATTCATA---------CCCACGGCATGAAGCTTCACTGGG-AAAGGAAGCC-T-TTCCACAATAGTGGCTTCCA-TTTCAATATGTGAGAATTCT--GAGATG---TCGTT--AAATC-TT-TGAAACTG-T-TCA-CCTATC--AAAGTAATGTCCAC--AA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AAAGTCAACATAAAATATATCATTTGTAACATTGAAGAAATATGTTCTCCTTTCTATATTGTAAATTTTGAATGATAGTCACCCAAAATACCTTTTACATATACAAGCAGTACAGGCATCATCGCTATAGCATCCAGTACT
Unaligned ( gi|15 ): TAAATGTACAACAGTACAGGCATCATCGCTACAGCATCCAGTAAATTGAACTTAAGAACATCTATTGGAAC
Unaligned ( gi|18 ): GGAAGTCAACATAAAATATATCATTTGTAACA