lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 11 111111 3333 222222222222 111111111 1111111 88888888888888888888888888888888888888888888888888888888 22222222 111 111111111 44444444444444 111 11111111 1 1111111 11 111111 11 111 2222 7777777777777777777777777777777777777777777777777777777777777 1 222 44444 3333333333 333333333333 3333333333333333333 333 1111 11 33333 3 2222222 222222222 3 11 111 777777777777777777777777777777 111 999999
lowQualScore : 2 0 0 0 0 3 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 8 5 66 8 11 8 999999 4444 111111111111 999999999 1 6666666 99999999999999999999999999999999999999999999999999999999 555 44444444 5 5 0 5 000 5 5 5 222222222 88888888888888 5 5 555 1 5 88888888 5 1 5 666 8888888 11 5 5 4 5 00 77 6 6 6 666666 6 33 6 99 6 6 6 111 3333 4444444444444444444444444444444444444444444444444444444444444 6 6 7 6 6 6 6 6 0 8 111 00000 8 8 8 1111111111 777777777777 8 8 8 88 8 11 5 0 4444444444444444444 1 6 1 99 333 0000 33 77777 2 3 9999 1111111 3 1 8 000000000 0 8 2 6 11 777 6 1 1 6 555555555555555555555555555555 111 1 9999 6 6 3 6 77 5 0 5 55 5 1 5 5 333333 5 5 5 5
lowQualScore : . . . . . . ...................................................................................... .. . . .. . .. . ...... .... ............ ......... . ....... ........................................................ ... ........ . . . . ... . . . ......... .............. . . ... . . ........ . . . ... ....... .. . . . . .. .. . . . ...... . .. . .. . . . ... .... ............................................................. . . . . . . . . . . ... ..... . . . .......... ............ . . . .. . .. . . ................... . . . .. ... .... .. ..... . . .... ....... . . . ......... . . . . .. ... . . . . .............................. ... . .... . . . . .. . . . .. . . . . ...... . . . .
lowQualScore : 5 0 0 0 0 2 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 0 6 88 0 00 0 222222 4444 888888888888 555555555 7 3333333 77777777777777777777777777777777777777777777777777777777 999 44444444 7 7 7 7 000 7 7 7 999999999 00000000000000 7 7 000 4 0 11111111 7 4 7 111 6666666 44 7 7 9 7 77 99 7 7 7 000000 7 33 7 22 7 7 7 777 3333 8888888888888888888888888888888888888888888888888888888888888 7 7 3 7 7 7 7 7 0 0 666 00000 0 0 0 0000000000 888888888888 0 0 0 88 0 66 6 8 8888888888888888888 0 7 7 22 888 8888 22 22222 5 3 7777 0000000 8 0 0 888888888 8 0 0 0 00 444 7 0 0 7 888888888888888888888888888888 777 0 8888 7 7 2 7 99 0 2 0 22 0 7 7 7 666666 7 7 7 7
consensus : TGAAAGAGAC-C-TTAT-TA-GCTGGTATA-----------AAATAAAAAA-TATTTAA---ATTT--------TT-AAAAATTAA--AA----AAACAAAC--TTAGA--AATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATGAC--CACGTATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACGCAGAGGCCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGC-----GTN-N-N--CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATTTTTAG----------AT----------------AGG--------A----------CA----AGTC-AT-GGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTTTTACCG-ATG-CAGGAG-ATG-GC-TGAAGTTTCT-TTGT-C-CCTCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---ATA---ACACA-GC--AAAT-CTTCAAGAC--AAAAGCG--GTA--TGCTACAAACACTTCGTTGACGT-TGTGTAATCATTGCACACG-GC-ACCAAT-TACAATAGAATGA-CCCCCC-TC--T--AGTACTGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTTCGTTT-TCC--------TCTTGTTT-CG--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TCGGTCCGACAGTATTCTAA-AATTC-A-TCGGACCAGTGCATA-TTTTATCGGACTT-TGCCAC-AT-GT-CCGAC-G-ACCTTGGGAATG
Reference ( gi|3 ) : TGAAAGAGAC-C-TTAT-TA-GCTGGTATA-----------AA-TAAAAAA-TATTTAA---ATTT--------TTTAAAAATTAA--AA----AAACAAAC--TTAGA--A-TGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATGCA--CACATATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACACAGAGGCCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGC-----ATA-A-T--CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT---------------AT----------------AGG--------A----------CA----AGTC-AT-GGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTTTTACCGTATC-CAGGAG-ATG-GC-TGAAGTTTAT-TTG--C-CCTCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---ATA---ACAC--GC--AAAT-CTTCAAGAC--AAAAGCG-TATA--TGCTACAAACACTTTGTTGACGTGTGTGTAATCATTGCA-ACG-GC-ACCAAT-TACAATAGAATGA-CCCCC--TC--T--AGTACTGAATGGTACT-ATT-AAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTTCGTTT-TCC--------TCTTGTTT-CA--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TTGGTCCGGCAGTATTCTAA-AATTC-A-TCGGACCAGTGCATA-TTTTATCGGACTT-T------AT-GT-CCGAC-G-ACCTTGGGAATG
gi|1 : TGAAAGAGAC-CCTTAT-TATGCTGGTATA-----------AAATAAAAAAATATTTAA---ACTT--------TTTAAAA-TTAA--AA----AACCAA-C--TTAGA--AATGATTAAATTTCCAAA-CACATATT-ATTTCAT-G-GAT--ACAT------TAGTCTCTACAGAATGAC--CACATATCA-CCTCGCCATACTTCTGC-C-AGATTTCGTTTACACACAGAGGCCTC------GA-CG--TG------------TAACCT-----T----------G------TCATTTCCAAT-AAT--TCCCTCT-T-CACT-AACTTAT-G-A-GATGATTT-AA-AAGC-----ATA-AGTA-CAT-C-ATTTATCCGGCCTC-CGCGCGGGCTGACC-ATACGTCAATA-T-TATTACCGCATTAGAA-CAGAACAA-ATTACTAGACTTT-CT-TC-----------CTA----ATT---CCG-AAGTG-C-CTAGT-GTGTCAAAC----TTCATTACATT---------------ATTTAGGATTGCGATTATAGG--------A----------CA----AGTCCAT-GGTCGATTCTCGGACCCATTTG-GTA-TTGAATT-TAATGAGGAACATCTTTTTACCGGATG-CAGGAG-ATG-GC-TGAAGTTTCTCTTGT-C-CCTCAGTAGTCAGCT-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGAT---------------C--G-----AT-CTTCAAGAC--AAAGGCGGTATAAATGCTACCAACACTTCGTTGACGT-TGTGTAATCATTGCACACG--C-ACCAAT-TACAATAAGAAGA-CCCCCCCTC--T--AGTACTGAATGGTACTCATTTAAAGAATAGGGAATTTCCGGAAGTTTCGTGTA-A-GCAAATATT-TT-CTTTTCGTTT-TCC--------TCTTGTTT-CG---TT-T---CCAC---TCTTTTTT--GTTT-TCATTTTTCCTTTAATAT-TGTACCGGTCAT--TTGGTCCGACAGTATTCTAA-AATTT-ATTCGGACCA-TGCATATTTTTATCGGACTT-TGCCAC-AA-G--CCGAC-GAACCTTGGGAA
gi|2 : cagtcgagtgccaggtgtttttaaacttacaggaacatttggtccggtaattgttaagatgttaccggaccgaacaacatttttaccgaaccgaatTGAAAAA--CTC-TTATATA-GCTCGTATA-----------AAATAAAAAA--ATTGAA---ATTT--------TT-AAAAATCAA--AACAAAAAATTAAC--TTAAA--AATAATTAA--TTTCAAAACACATATTTATTTCATTGCGATTTA-AT------TAGTCTCTACA-AATAC---CACATATCATCTTT-CCAAACT-CCGC-CCACAGT-CGTT-ACATGCAA--GCCTC------TA-CGATTT------------TACCCTCACGTT----------T------TCATTTTCA-TTAAT--T-----T-T-C-AT-AA---AT-GCA-AAT----A-AAGAAGC-----ATA-C-T---AT-C-ATTT--TCG------------------------C-TCAAA--T-TA-------ATGA-AA-CAAAA-AT--TTACTA--CTTT-CT-TCATAA-TG-T-TCTAT-AGATTG-TCCG-A--TG-C-ATAAT-GTGC---ACAA--TTCAATACATT----------------T----------------AAG--------ATGCGTGTTACCATTACAATC-AT-G-TCAATTCTCAGAC--ATGTA-GTA-TT-AATT-TA-CGAG-A-CATCTTT--ACCA-ATG-CAGGAA-TTG-GC-T-AAGTCCTT-GTC--C-CCTTCATAGTCAT-TTAGCAT-CAT-TTTATTAA--TC-TATT-CATGATTCG---A-A---ACACATGC--ATATTCTTCGA-AC--AAAAGCGGTATA--T-CTACAAACACTT-GTTGAT-TCT-TGTGATCATTGCACACA-GCTACCAAT-TACAATAGAATGA-CCCCC--CCCTT--A-TAC-GAATGGTACT-ATT-TAAAAA-AGGGAATTTCCGGAG--TTCGT-TA-A-GCAA-TATTCTTTCTTTTCATTT-TTC--------TCTTGTTTTCG--TTT-TTTCCCAC---TCTTTT-T--AGTT-TCG-TTTTTCTTT-ATATCTGTACCGGTCATTCTCGTTCCGACATTATTCTAA-AATTCAA-TC-GACCAATGCATC-TT---TCGGACTT-TCCAAACAT-GT-CCGAC-G-ACCT--GGAATGgtga
gi|7 : gattgccaagtgtttaattacaggacatttgtcccgcatgttagagatgtaccggaccaacaaccattttaccggaccgaaAGAC-C-TTAT-CA-GCTGGTATATTTCATTGGCTAA-TGAAAAA-TA--------AT----------------AAT-----GA----AAACA-----TTA--------ATAAA--TTTCATA-CACATGTTTATTTCA-AA-GAT--A-ATAAGGCCTAGTCTCTACAGAATGa
gi|10 : taccaaggtgtttttaacttcacacgacattcggtccgataatgtcagagatgttaccagaccgaacaacattttaccggaccgaattgaAGAC-C-TTAT-TA-GCTGGT-----------------------A-TATTTCATTCATTTGGCTCGAATTAAAAAATTAATCAA----ACACAAACATTTAGAGTA-TG-CTAT--TTTTAAA---------------ATTG-GAT--A-AT------TAGTCaccaaagtgacgcccacgcatcatgttcttccatgtgcccttcacaatattggtcgttttcgtcatcttttccgtagatgacattgaaagcgtctacatcattttcctcctgatcatctgaaaattaaatacaaaattactacatcatcaaatgaaaaacacattttatagatt
gi|5 : tcaataccaggtgttttttaacttcacagaacattcgtcggtaattgttagagaattgttccaccgagcaacatttttaccggacgaatagaAA--TTTGAAA-CACATACTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATGAC--CACGTATCAT----------CTTCCTC-C----------TTGTAC-------CCTT------CA-CA---G------------TAG--------T----------G------TCATTTTCA-T-AATCTT-----T-T-ACAT-AA---AT-G-A-AAC----T-AA-AAGC-----GTT-T-A--CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ACTA-AA-CAAAA-AA--TTACTA--CTTT-CT-TC-TAA-TG-TCTCTCT-AAACTG-TCCG-A--TG-C-ATAGC-GTGC---AC----TTAGTTACATTTTTAGATGC------ATGCGTCA----------AGG--------A----------CA----AGCC-AT-GGTCGATTCTCGGACC-ATTTA-GTA-TTGCATT-TA-CGGGGA-CATCTTT--ACCAT-TG-CAGGAG-ATG-GC-TGAAGTTT-C-TTG--T-CCCC-----TCAG-T-AGCAT-CAT-TT-ATCAAAATC-TATTACCCTCTTCG---ATA---ACAC--ACCCAAAT-CTTCAAGAC--AAAAGCG--GTA--TGCTACAAACACTTTGTTGACTT-TGTCTAATCATTGCACACG-GT-ACCAAT-------AGAATGA-CCCCCC-TC--TTAAGTACTGAATGGCGCT-ATTTAAAGAAAAGGGAATTTCCGGAG--TTTGTGTA-T-GCAAATATT-TTTATTTT-ATTT-TCCACATTTTCTCTT-TTT-CT--TTT-TGT-TTAT---T-TGTTTT--AGAT-TCG-CTTTCCTTTAATAT-TGTACCAGTCAT--ATGGTCTGACAGTATTCTAA-AATTC-A-TTGGACCAGTGCATG-TTTTATCAAACTT-TGCC---AC-GTCCCGAC-G-ACCTTGGGAATGct
gi|4 : aaaaaatttttttaga------TAGTCTCTACAGAATGAC--CACATATC---CTC-CCAAACTTCCGC-G-AGAGTTCGTTTACACACAGAGGCCTCTTCGGGGAGCA--TGACCATCCTCCGTTACCCT-----T----------ACGGTGTTCATTGGCA-T-AAT--T-----TCT-CCAT-AA---ATTG-ACAAG----T-A----GC-----ATT-A----CATAC-ATTT--TCGTCCTC-C--------TGACCGAT-C-TCAACA-T-TA-------ATTA-AA-GCAAA-AA-ATTACTA--CTCT-TC-TC-TAA-GGATCTCTAT-AGATTGGTCCG-A--TGAC-ATAGT--TGC---AT----T--ATTACATT---------------TT----------------TAG--------A----------TG----CGTT-TTAGGACAAGTC---GACC-ATTTAAGTAATTGAATT-TA-CGAGGA-CAATCTTTTGCCG-ATG-CAGGAG-ATG-GCTTGAAGTTTTC-TTGTCC-CCTCAGTAG--------GCAT-CAT-TT-ATTAAA-TCTTATTACACGATTCG---ATAAACACAC--GC--AAAT-CTTC-AGACAAAAAAGCG-GGTA------GTAAACACTTC-CTGACAT-TGTGTAATCATTGCACACG-GC-ACCAa
gi|11 : TCTCTTGAGAATGTATCCACGTATTATCTTC-C-----TTCCGTGT-AG----CCTTCAC---CAGTG---TC---------CG--TT------------T---TT-----T----------A------TCATTTT----------------T-T-CCATCAA---AT-G-A-AAT----TTCA-AAGTGTTTTATATA-TTACAT-CTATTT----GTCCTCTC--------TGACC-AT-T-TTAAAA-AATA-------ATGA-GA-CAGAA-AAGATTACTA--CTTTCCT-TC-TAATTG-TCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagtattctaaaattcatcggaccagtgcatattttatcggactttgccacatgtccgacgaccttgggaatgactg
gi|16 : CTTCCGT-C-AGAGTTCGTTTACAC---GAGGCCTC------GA-CG--gccaatactg
gi|7 : -CA--TG------------TGCCCT-----TCACAATATTGG------TCGTTTTCG-T-CATCTT-----T-T-CCGT-AG---AT-G-A-CAT----T-GA-AAGC-----GTC-T-A--CAT-C-ATTT-----TCCTC-C--------TGATC-AT-C-TGAAAA-T-TA-------A--A-TA-C---A-AA-ATTACTA--Cgggag
gi|15 : taccaaggtgtttttaacttcacacgacattcggtccgataatgtcagagatgttaccagaccgaacaacattttaccggaccgaattgaagaccttatcagctggtatatttcattggctaatgaaaaataataatgaaaacattaataaatttcatacacatgtttatttcaaagataataaggcctagtctctacagaatgaccaaagtgacgcccacgcatcatgttcttc----------G------TCATTTTCA-T-ATT--T-----T-TTCCAT-AA---AT-G-A-AAT----T-AA-AAGC-----GTT-T-A--CAT-C-ACTT--TCGTCCTC-C--------TGAatcatcaaatgaaaaacacattttatagatt
gi|6 : -C--------TGACC-ATAC-TCAAAAAT-TA-------ATTA-AAACCAAA-TA-ATTACTA--CTTT-TTGTC-TAAATG-T-TCTATGAAATT--TCCGTA--TG-CGACATTAGTGC---AC----GTCTTTACATTTTTAGATAGCGTTGTAT----------------AGG--------A----------CA----AGTC-AT-GGCGGATTC--GGACC-ATT-A-GT---TGAATTCTT-CGAG-A-CATCTT---ACCG-ATGGCAGGAGCATGAGC-TGAAGTTGCT-TTG--TGCCTC------CAG---AGCATTCATGTT-ATTAAA-TC-TAT-AGACG-TTCGCGCATA----CACA-GC--AAAT-CTTTAAGAC--AAAAGCG--GTA--TGCTACAAACACTTCGTTGGTGT-TGTGTAATCAATGCA-CCATGT-AC--ATGTACAATAGAATGATCCCCC--TC--T--AGTAATGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCATGTA-T-GCAAATATT-CCTCGTTTTGTT----------------------------T-T---CTAC---TCTTT------------------CCTTTAATAT-TGTATCGGTCAT--TTGGTCCGACAATATTCTAA-AATTC-A-TCTGACCAGTGCATA-TTTTATCGGACTT-TGCCAC-AT-GT-CCGAC-G-ACCTTGGGAATG
gi|12 : CTCTAT-AGATTG-TCCG-A--TG-C-ATAAT-GTGC---ACAAGTTTCAATACATTTTTAG----------AT----------------GCGTTTACATTA----------CA----AGTC-AT-GGTCAATTCTCAGACC-ATTTA-GTA-TTGAATT-TA-CGa
gi|8 : AT-CTTCAAGAC--A---GCG--GTA--TGCTACA--CA-----TTG------------TCATTGCACATG-GT-ACCAAT-------AG--------------C--T--AGTAATGAATGGTGCT-ATTTAAAGAATAAGGAATTTCCGGAG--TTCATGTACATGCAAATATT-TTTATTTTCGTTT-TC----------------------TTT-T---CCACATTTTTTTTTT--AGTT-TTG-TTTTCCTTTAATAT-TGTACGGGTCAT--ATGGTCCGACAGTATTCTAA-AATTC-A-TCGGAACAGTGCATA-TTTTATCGGACTT-TGTCAC-AT-GT-CCGAC-G-ACCTT
gi|9 : CAAAT-TT-ATTTTATTCATTTATCG--------GATTATTC-CAACTTTAC---CCAA---TCATTTTCCCAGTTCTCA-TTG-CCTCTA-CAT-T--ACCGGACAT--TTGGTCCGTCACAATTCTAA-CTTTT-A-CCGGACCAAGGCTAA-TTTTACCGGACTTGTCCG---ATGGT-CCGACAA-ACCTTCGGAA
gi|1 : atgacacttttttggaaaaccattttaggaatccgtggaaaagattaacatgtatggatttGTTGT--TCGGTCCGGTAACATCTTAACAATT--A-CCGGACCAacactg
gi|4 : cagtcgagtgccaggtgtttttaaacttacaggaacattCAGTATTCTAA-AATTC-A-TCGGACCAGTGCATA-TTTTATCGGACTT-TGCCAC-AT-GT-CCGAC-G-ACCTTGGGAATGatttttaccgaaccgaattgaaagagacccttattatgctggtataaaataaaaaaatatttaaactttttaaaattaaaaaaccaacttagaaatgattaaatttccaaacacatattatttcatggatacattagtctctacagaatgaccacatatcacctcgccatacttctgccagatttcgtttacacacagaggcctcgacgtgtaaccttgtcatttccaataattccctcttcactaacttatgagatgatttaaaagcataagtacatcatttatccggcctccgcgcgggctgaccatacgtcaatattattaccgcattagaacagaacaaattactagactttcttcctaattccgaagtgcctagtgtgtcaaacttcattacattatttaggattgcgattataggacaagtccatggtcgattctcggacccatttggtattgaatttaatgaggaacatctttttaccggatgcaggagatggctgaagtttctcttgtccctcagtagtcagctagcatcatttattaaatctattacacgatcgatcttcaagacaaaggcggtataaatgctaccaacacttcgttgacgttgtgtaatcattgcacacgcaccaattacaataagaagaccccccctctagtactgaatggtactcatttaaagaatagggaatttccggaagtttcgtgtaagcaaatattttcttttcgttttcctcttgtttcgtttccactcttttttgttttcatttttcctttaatattgtaccggtcatttggtccgacagtattctaaaatttattcggaccatgcatatttttatcggactttgccacaagccgacgaaccttgggaagtga
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): ACAAATTGAAGGACCTTGTGAGTAATTTTGTCTTATCAAAGAATTAATTAATTGCAATTTGCTTCTGACTTGACTATTTGATATTATTAACA
Unaligned ( gi|14 ): TAGTCTAAAGTTTTTTAAATAACTTCATTGGACATTTGGTCCGTTAATGTTAGAGATGTTACCGGACCG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 3333333333333 33333333333333333333 11 1111 11111 1111 111111 1111111 111111111 1111111111 66666666666666666666666666666666666666666666666666666666 22222222 1111 33333333333 111 11111111 1 1111111 1 1 111 2222 000000000000000000000000000000000000000000000 11 1 111111 111 111 11 111111 11 111 22222222 11111 111 111
lowQualScore : 8 8 8 8 0 7777777777777 88 0 11 33333333333333333333 3 11 7777 22222 5555 0 99 6 3 7 6 99 6 666666 555 2 5555555 0 1 0 999999999 2 7777777777 33333333333333333333333333333333333333333333333333333333 5 5 00000000 5 5 5 888 5 5 5 0000 5 5 22222222222 5 5 222 0 4 66666666 5 0 5 5 5 6666666 5 5 3 5 88 66 5 5 1 1 555 5 66 5 77 5 5 5 000 0000 5 1 333333333333333333333333333333333333333333333 5 0 1 5 5 5 5 5 6 6 44 3 6 6 6 6 6 6 000000 3 666 6 6 6 6 6 3 111 999 66 6 5 0 77 5 5 333333 66 1 5 0 5 44 1 5 6 99 6 3 99 333 5 44 00000000 0 5 7 1 3 11111 5 777 000 1 1 77 5 5 5 66 0 4 4 4 4 4 4 2 66 5 5 5
lowQualScore : . . . . . ............. .. . .. .................... . .. .... ..... .... . .. . . . . .. . ...... ... . ....... . . . ......... . .......... ........................................................ . . ........ . . . ... . . . .... . . ........... . . ... . . ........ . . . . . ....... . . . . .. .. . . . . ... . .. . .. . . . ... .... . . ............................................. . . . . . . . . . . .. . . . . . . . ...... . ... . . . . . . ... ... .. . . . .. . . ...... .. . . . . .. . . . .. . . .. ... . .. ........ . . . . . ..... . ... ... . . .. . . . .. . . . . . . . . .. . . .
lowQualScore : 0 0 0 0 8 2222222222222 88 8 22 22222222222222222222 8 00 0000 44444 6666 8 22 7 2 3 7 22 7 444444 999 7 3333333 7 6 1 555555555 0 1111111111 99999999999999999999999999999999999999999999999999999999 0 0 22222222 0 0 0 888 0 0 0 6666 0 0 99999999999 0 0 000 1 4 11111111 0 0 0 0 0 2222222 0 0 1 0 22 99 7 7 4 4 888 7 44 7 99 7 7 7 000 0000 7 4 777777777777777777777777777777777777777777777 7 7 4 7 7 7 7 7 7 7 33 3 7 7 7 7 7 7 888888 2 555 7 7 7 7 7 2 777 000 55 7 7 1 99 7 7 777777 00 7 7 7 7 00 7 2 7 22 7 5 22 000 7 44 77777777 4 7 9 4 0 11111 7 999 000 7 4 99 7 7 7 11 7 0 0 0 0 4 4 5 99 0 0 0
consensus : TGAAAGAGAC-C-TTAT-TA-GCTGGTATA----A------AATAAAAAA-TATTTAA---A-TTT--------TT-AAAAATTAA--AA----AAACAAAC--TTAGAA-ATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CCACGTATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACGCAG-AGG--CCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGCGTNNN--------CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT-TTTAG----------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTTTTACCG-ATG-CAGGAG-ATG-GC-TGAAGTTTCT-TTGT-CCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---AT-AACACA-GC-AAAT-CTTCAAGAC--AAAAGC-G-GTAT----G-CTACAAACACTTCGTTGACGT-TGTGTAATCATTGCACACGGC-ACCAAT-TACAATAGAATGACCCCCC-TCT--AGTACTGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTT--------CGTTT-TCCTCTTGTTT-CG--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TCGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATG
Reference ( family-2018 ) : TGAAAGAGAC-C-TTAT-TA-GCTGGTATA----A------AATAAAAAA-TATTTAA---A-TTT--------TT-AAAAATTAA--AA----AAACAAAC--TTAGAA-ATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CCACGTATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACGCAG-AGG--CCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGCGTNNN--------CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT-TTTAG----------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTTTTACCG-ATG-CAGGAG-ATG-GC-TGAAGTTTCT-TTGT-CCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---AT-AACACA-GC-AAAT-CTTCAAGAC--AAAAGC-G-GTAT----G-CTACAAACACTTCGTTGACGT-TGTGTAATCATTGCACACGGC-ACCAAT-TACAATAGAATGACCCCCC-TCT--AGTACTGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTT--------CGTTT-TCCTCTTGTTT-CG--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TCGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATG
gi|1 : GTTGT--TCGGTCCGGTAACATCTTAACAAT-T--A-CCGGACCA
gi|1 : cagtcgagtgccaggtgtttttaaacttacaggaacattTGAAAGAGAC-CCTTAT-TATGCTGGTATA----A------AATAAAAAAATATTTAA---A-CTT--------TT-TAAAATTAA--AA----AACCAA-C--TTAGAA-ATGATTAAATTTCCAAA-CACATATT-ATTTCAT-G-GAT--ACAT------TAGTCTCTACAGAATG-A-CCACATATCA-CCTCGCCATACTTCTGC-C-AGATTTCGTTTACACACAG-AGG--CCTC------GA-CG--TG------------TAACCT-----T----------G------TCATTTCCAAT-AAT--TCCCTCT-T-CACT-AACTTAT-G-A-GATGATTT-AA-AAGCATAAGTA------CAT-C-ATTTATCCGGCCTC-CGCGCGGGCTGACC-ATACGTCAATA-T-TATTACCGCATTAGAA-CAGAACAA-ATTACTAGACTTT-CT-TCCTAA-T-----------------TCCG-AAGTG-C-CTAGT-GTGTCAAAC----TTCATTACATTATTTAGGATTGCGATTAT----------AG----------G----------ACAAGTCCATGGTCGATTCTCGGACCCATTTG-GTA-TTGAATT-TAATGAGGAACATCTTTTTACCGGATG-CAGGAG-ATG-GC-TGAAGTTTCTCTTGT-CCC--TCAGTAGTCAGCT-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGAT-CG---AT----------------CTTCAAGAC--AAAGGC-G-GTATAAATG-CTACCAACACTTCGTTGACGT-TGTGTAATCATTGCACACG-C-ACCAAT-TACAATAAGAAGACCCCCCCTCT--AGTACTGAATGGTACTCATTTAAAGAATAGGGAATTTCCGGAAGTTTCGTGTA-A-GCAAATATT-TT-CTTTT--------CGTTT-TCCTCTTGTTT-CG---TT-T---CCAC---TCTTTTTT--GTTT-TCATTTTTCCTTTAATAT-TGTACCGGTCAT--TTGGTCCGACAGTATTCTAA-AAT-TT-ATTCGGACCA-TGC-ATATTTTTATCGGACTTTGCC--ACAA-G-CCGAC-GAACCTTGGGAAatttttaccgaaccgaattgaaagagacccttattatgctggtataaaataaaaaaatatttaaactttttaaaattaaaaaaccaacttagaaatgattaaatttccaaacacatattatttcatggatacattagtctctacagaatgaccacatatcacctcgccatacttctgccagatttcgtttacacacagaggcctcgacgtgtaaccttgtcatttccaataattccctcttcactaacttatgagatgatttaaaagcataagtacatcatttatccggcctccgcgcgggctgaccatacgtcaatattattaccgcattagaacagaacaaattactagactttcttcctaattccgaagtgcctagtgtgtcaaacttcattacattatttaggattgcgattataggacaagtccatggtcgattctcggacccatttggtattgaatttaatgaggaacatctttttaccggatgcaggagatggctgaagtttctcttgtccctcagtagtcagctagcatcatttattaaatctattacacgatcgatcttcaagacaaaggcggtataaatgctaccaacacttcgttgacgttgtgtaatcattgcacacgcaccaattacaataagaagaccccccctctagtactgaatggtactcatttaaagaatagggaatttccggaagtttcgtgtaagcaaatattttcttttcgttttcctcttgtttcgtttccactcttttttgttttcatttttcctttaatattgtaccggtcatttggtccgacagtattctaaaatttattcggaccatgcatatttttatcggactttgccacaagccgacgaaccttgggaagtga
gi|10 : cagtcgagtgccaggtgtttttaaacttacaggaacatttggtccggtaattgttaagatgttaccggaccgaacaacatttttaccgaaccgaatAGAC-C-TTAT-TA-GCTGGT----------------------A-TATTTCATTCA-TTTGGCTCGAATTAAAAAATTAATCAA----ACACAAACATTTAGAGTATG-CTAT--TTTTAAA---------------ATTG-GAT--A-AT------TAGTCgtga
gi|11 : tcaataccaggtgttttttaacttcacagaacattcgtcggtaattgttagagaattgttccaccgagcaacatttttaccggacgaatagaTCTCTTGAGAATGTATCCACGTATTATCTTC-C-----TTCCGTGT-AG----CCTTCAC---CAG-TG-----TC---------CG--TT------------T---TT-----T----------A------TCATTTT----------------T-T-CCATCAA---AT-G-A-AAT----TTCA-AAGTGTTTTATATATTACAT-CTATTT----GTCCTCTC--------TGACC-AT-T-TTAAAA-AATA-------ATGA-GA-CAGAA-AAGATTACTA--CTTTCCT-TC-TAATTG-TCTct
gi|12 : CTCTAT-AGATTG-TCCG-A--TG-C-ATAAT-GTGC---ACAAGTTTCAATACATT-TTTAG----------AT----------GC----------GTTTACATT--ACAAGTC-ATGGTCAATTCTCAGACC-ATTTA-GTA-TTGAATT-TA-CGgccaatactg
gi|15 : ----------G------TCATTTTCA-T-ATT--T-----T-TTCCAT-AA---AT-G-A-AAT----T-AA-AAGCGTTTA--------CAT-C-ACTT--TCGTCCTC-C--------TGA
gi|16 : CTTCCGT-C-AGAGTTCGTTTACAC---G-AGG--CCTC------GA-CG--
gi|2 : TGAAAAA--CTC-TTATATA-GCTCGTATA----A------AATAAAAAA--ATTGAA---A-TTT--------TT-AAAAATCAA--AACAAAAAATTAAC--TTAAAA-ATAATTAA--TTTCAAAACACATATTTATTTCATTGCGATTTA-AT------TAGTCTCTACA-AAT--A-CCACATATCATCTTT-CCAAACT-CCGC-CCACAGT-CGTT-ACATGCAA---G--CCTC------TA-CGATTT------------TACCCTCACGTT----------T------TCATTTTCA-TTAAT--T-----T-T-C-AT-AA---AT-GCA-AAT----A-AAGAAGCATACT---------AT-C-ATTT--TCG------------------------C-TCAAA--T-TA-------ATGA-AA-CAAAA-AT--TTACTA--CTTT-CT-TCATAA-TG-T-TCTAT-AGATTG-TCCG-A--TG-C-ATAAT-GTGC---ACAA--TTCAATACATT-TA-AG----------AT----------GC----------GTGTTACCATTACAA-TC-ATG-TCAATTCTCAGAC--ATGTA-GTA-TT-AATT-TA-CGAG-A-CATCTTT--ACCA-ATG-CAGGAA-TTG-GC-T-AAGT--CC-TTGT-CCCCTTCA-TAGTCAT-TTAGCAT-CAT-TTTATTAA--TC-TATT-CATGATTCG---A--AACACATGC-ATATTCTTCGA-AC--AAAAGC-G-GTAT----ATCTACAAACACTT-GTTGATTC-T-TGTGATCATTGCACACAGCTACCAAT-TACAATAGAATGACCCCCC-CCT--TATAC-GAATGGTACT-ATTTAAAAAA--GGGAATTTCCGGAG--TTCGT-TA-A-GCAA-TATTCTTTCTTTT--------CATTT-TTCTCTTGTTTTCG--TTT-TTTCCCAC---TCTTTT-T--AGTT-TCG-TTTTTCTTT-ATATCTGTACCGGTCATTCTCGTTCCGACATTATTCTAA-AAT-TCAA-TC-GACCAATGC-ATC-TT---TCGGACTTT-CCAAACAT-GTCCGAC-G-ACCT--GGAATGgggag
gi|3 : gattgccaagtgtttaattacaggacatttgtcccgcatgttagagatgtaccggaccaacaaccattttaccggaccgaaTGAAAGAGAC-C-TTAT-TA-GCTGGTATA----A------A-TAAAAAA-TATTTAA---ATTTT--------TT-AAAAATTAA--AA----AAACAAAC--TTAG-A-ATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-C-ACACATATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACACAG-AGG--CCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGCATAAT--------CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT----------------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTTTTACCGTATC-CAGGAG-ATG-GC-TGAAGTTTAT-TTG--CCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---AT-AACAC--GC-AAAT-CTTCAAGAC--AAAAGC-GTATAT----G-CTACAAACACTTTGTTGACGTGTGTGTAATCATTGCA-ACGGC-ACCAAT-TACAATAGAATGA-CCCCC-TCT--AGTACTGAATGGTACT-A-TTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTT--------CGTTT-TCCTCTTGTTT-CA--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TTGGTCCGGCAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTT-------AT-GTCCGAC-G-ACCTTGGGAATGa
gi|4 : ------TAGTCTCTACAGAATG-A-CCACATATC---CTC-CCAAACTTCCGC-G-AGAGTTCGTTTACACACAG-AGG--CCTCTTCGGGGAGCA--TGACCATCCTCCGTTACCCT-----T----------ACGGTGTTCATTGGCA-T-AAT--T-----TCT-CCAT-AA---ATTG-ACAAG----T-A----GCATTA---------CATAC-ATTT--TCGTCCTC-C--------TGACCGAT-C-TCAACA-T-TA-------ATTA-AA-GCAAA-AA-ATTACTA--CTCT-TC-TC-TAA-GGATCTCTAT-AGATTGGTCCG-A--TGAC-ATAGT--TGC---AT----T--ATTACATT-TTTAG----------ATGCGTTTT---AG----------G----------ACAAGTC---------------GACC-ATTTAAGTAATTGAATT-TA-CGAGGA-CAATCTTTTGCCG-ATG-CAGGAG-ATG-GCTTGAAGTTTTC-TTGTCCCC--TCAGTAG--------GCAT-CAT-TT-ATTAAA-TCTTATTACACGATTCG---ATAAACACACGC-AAAT-CTTC-AGACAAAAAAGCGG-GTA---------GTAAACACTTC-CTGACAT-TGTGTAATCATTGCACACGGC-ACCA
gi|4 : ACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagtattctaaaattcatcggaccagtgcatattttatcggactttgccacatgtccgacgaccttgggaatgactg
gi|5 : tagtctctacagaatgaccacatatcctcccaaacttccgcgagagttcgtttacacacagaggcctcttcggggagcatgaccatcctccgttacccttacggtgttcattggcataatttctccataaattgacaagtagcattacatacattttcgtcctcctgaccgatctcaacattaattaaagcaaaaaattactactcttctctaaggatctctatagattggtccgatgacatagttgcattattacatttttagatgcgttttaggacaagtcgaccatttaagtaattgaatttacgaggacaatcttttgccgatgcaggagatggcttgaagttttcttgtcccctcagtaggcatcatttattaaatcttattacacgattcgataaacacacgcaaatcttcagacaaaaaagcgggtagtaaacacttcctgacattgtgtaatcattgcacacggcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaAA--TTTGAAA-CACATACTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CCACGTATCAT----------CTTCCTC-C----------TTGTAC----------CCTT------CA-CA---G------------TAG--------T----------G------TCATTTTCA-T-AATCTT-----T-T-ACAT-AA---AT-G-A-AAC----T-AA-AAGCGTTTA--------CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ACTA-AA-CAAAA-AA--TTACTA--CTTT-CT-TC-TAA-TG-TCTCTCT-AAACTG-TCCG-A--TG-C-ATAGC-GTGC---AC----TTAGTTACATT-TTTAG----------ATGCATGCGTCAAG----------G----------ACAAGCC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGCATT-TA-CGGGGA-CATCTTT--ACCA-TTG-CAGGAG-ATG-GC-TGAAGTTTCT-T-GT-CCC--C------TCAG-T-AGCAT-CAT-TT-ATCAAAATC-TATTACCCTCTTCG---AT-AACACA-CCCAAAT-CTTCAAGAC--AAAAGC-G-GTAT----G-CTACAAACACTTTGTTGACTT-TGTCTAATCATTGCACACGGT-ACCAAT-------AGAATGACCCCCC-TCTTAAGTACTGAATGGCGCT-ATTTAAAGAAAAGGGAATTTCCGGAG--TTTGTGTA-T-GCAAATATT-TTTATTTTATTTTCCACATTT-TC-TCTT-TTT-CT--TTT-TGT-TTAT---T-TGTTTT--AGAT-TCG-CTTTCCTTTAATAT-TGTACCAGTCAT--ATGGTCTGACAGTATTCTAA-AAT-TC-A-TTGGACCAGTGC-ATG-TTTTATCAAACTTTGCC--ACGT--CCCGAC-G-ACCTTGGGAATGactg
gi|6 : aaaaaatttttttaga-C--------TGACC-ATAC-TCAAAAAT-TA-------ATTA-AAACCAAA-TA-ATTACTA--CTTT-TTGTC-TAAATG-T-TCTATGAAATT--TCCGTA--TG-CGACATTAGTGC---AC----GTCTTTACATT-TTTAG----------AT----------AGCGTTGTATAGG----------ACAAGTC-ATGGCGGATTC--GGACC-ATT-A-GT---TGAATTCTT-CGAG-A-CATCTT---ACCG-ATGGCAGGAGCATGAGC-TGAAGTTGCT-TTGT-GCC--TC------CAG---AGCATTCATGTT-ATTAAA-TC-TAT-AGACG-TTCGCGCAT-A-CACA-GC-AAAT-CTTTAAGAC--AAAAGC-G-GTAT----G-CTACAAACACTTCGTTGGTGT-TGTGTAATCAATGCACCATGT-AC--ATGTACAATAGAATGATCCCCC-TCT--AGTAATGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCATGTA-T-GCAAATA-----------------------T-TCCTC--GTTT-TG--TTT-T---CTAC---TC------------------TTTCCTTTAATAT-TGTATCGGTCAT--TTGGTCCGACAATATTCTAA-AAT-TC-A-TCTGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATGa
gi|7 : CAT--TCGGTCCGATAATG-TCAGA-GATGTT-A-CCAGACC-GAACAACA-TTTTACCGGACa
gi|7 : taccaaggtgtttttaacttcacacgaAGAC-C-TTAT-CA-GCTGGTATATTTCATTGGCTAATGAAAAA-TA--------A-T----------------AAT-----GA----AAACA-----TTA-------ATAAA--TTTCATA-CACATGTTTATTTCAA-A-GAT--A-ATAAGGCCTAGTCTCTACAGAATG-A-C----------------CAAAGTGACGC-C-------------CACGCATCATGTTCTTC---------CA--TG------------TGCCCT-----TCACAATATTGG------TCGTTTTCG-T-CATCTT-----T-T-CCGT-AG---AT-G-A-CAT----T-GA-AAGCGTCTA--------CAT-C-ATTT-----TCCTC-C--------TGATC-AT-C-TGAAAA-T-TA-------A--A-TA-C---A-AA-ATTACTA--Ccgaattgaagaccttatcagctggtatatttcattggctaatgaaaaataataatgaaaacattaataaatttcatacacatgtttatttcaaagataataaggcctagtctctacagaatgaccaaagtgacgcccacgcatcatgttcttccatgtgcccttcacaatattggtcgttttcgtcatcttttccgtagatgacattgaaagcgtctacatcattttcctcctgatcatctgaaaattaaatacaaaattactacatcatcaaatgaaaaacacattttatagatt
gi|8 : taccaaggtgtttttaacttcacacgacattcggtccgataatgtcagagatgttaccagaccgaacaacattttaccggaccgaattgaAT-CTTCAAGAC--A---GC-G-GTAT----G-CTACA-------------CAT-TGT-----CATTGCACATGGT-ACCAAT-------AG-------------CT--AGTAATGAATGGTGCT-ATTTAAAGAATAAGGAATTTCCGGAG--TTCATGTACATGCAAATATT-TTTATTTT--------CGTTT-TC--------------TTT-T---CCACATTTTTTTTTT--AGTT-TTG-TTTTCCTTTAATAT-TGTACGGGTCAT--ATGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGAACAGTGC-ATA-TTTTATCGGACTTTGTC--ACAT-GTCCGAC-G-ACCTTatcatcaaatgaaaaacacattttatagatt
gi|9 : CAAAT-TT-ATTTTATT--------CATTTATCGGATTATTC-CAACTTTAC---CCAA---TCATTTTCCCAGTTCTCA-TTG-CCTCTA-CAT-T--ACCGGACAT--TTGGTCCGTCACAATTCTAA-CTT-TT-A-CCGGACCAAGGC-TAA-TTTTACCGGAC-TTGTC--CGATGGTCCGACAA-ACCTTCGGAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACAAATTGAAGGACCTTGTGAGTAATTTTGTCTTATCAAAGAATTAATTAATTGCAATTTGCTTCTGACTTGACTATTTGATATTATTAACA
Unaligned ( gi|14 ): TAGTCTAAAGTTTTTTAAATAACTTCATTGGACATTTGGTCCGTTAATGTTAGAGATGTTACCGGACCG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 3333333333333 33333333333333333333 11 1111 11111 1111 111111 1111111 111111111 1111111111 66666666666666666666666666666666666666666666666666666666 22222222 1111 33333333333 111 11111111 1 1111111 1 1 111 2222 000000000000000000000000000000000000000000000 11 1 111111 111 111 11 111111 11 111 22222222 11111 111 111
lowQualScore : 8 8 8 8 0 7777777777777 88 0 11 33333333333333333333 3 11 7777 22222 5555 0 99 6 3 7 6 99 6 666666 555 2 5555555 0 1 0 999999999 2 7777777777 33333333333333333333333333333333333333333333333333333333 5 5 00000000 5 5 5 888 5 5 5 0000 5 5 22222222222 5 5 222 0 4 66666666 5 0 5 5 5 6666666 5 5 3 5 88 66 5 5 1 1 555 5 66 5 77 5 5 5 000 0000 5 1 333333333333333333333333333333333333333333333 5 0 1 5 5 5 5 5 6 6 44 3 6 6 6 6 6 6 000000 3 666 6 6 6 6 6 3 111 999 66 6 5 0 77 5 5 333333 66 1 5 0 5 44 1 5 6 99 6 3 99 333 5 44 00000000 0 5 7 1 3 11111 5 777 000 1 1 77 5 5 5 66 0 4 4 4 4 4 4 2 66 5 5 5
lowQualScore : . . . . . ............. .. . .. .................... . .. .... ..... .... . .. . . . . .. . ...... ... . ....... . . . ......... . .......... ........................................................ . . ........ . . . ... . . . .... . . ........... . . ... . . ........ . . . . . ....... . . . . .. .. . . . . ... . .. . .. . . . ... .... . . ............................................. . . . . . . . . . . .. . . . . . . . ...... . ... . . . . . . ... ... .. . . . .. . . ...... .. . . . . .. . . . .. . . .. ... . .. ........ . . . . . ..... . ... ... . . .. . . . .. . . . . . . . . .. . . .
lowQualScore : 0 0 0 0 8 2222222222222 88 8 22 22222222222222222222 8 00 0000 44444 6666 8 22 7 2 3 7 22 7 444444 999 7 3333333 7 6 1 555555555 0 1111111111 99999999999999999999999999999999999999999999999999999999 0 0 22222222 0 0 0 888 0 0 0 6666 0 0 99999999999 0 0 000 1 4 11111111 0 0 0 0 0 2222222 0 0 1 0 22 99 7 7 4 4 888 7 44 7 99 7 7 7 000 0000 7 4 777777777777777777777777777777777777777777777 7 7 4 7 7 7 7 7 7 7 33 3 7 7 7 7 7 7 888888 2 555 7 7 7 7 7 2 777 000 55 7 7 1 99 7 7 777777 00 7 7 7 7 00 7 2 7 22 7 5 22 000 7 44 77777777 4 7 9 4 0 11111 7 999 000 7 4 99 7 7 7 11 7 0 0 0 0 4 4 5 99 0 0 0
consensus : TGAAAGAGAC-C-TTAT-TA-GCTGGTATA----A------AATAAAAAA-TATTTAA---A-TTT--------TT-AAAAATTAA--AA----AAACAAAC--TTAGAA-ATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CCACGTATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACGCAG-AGG--CCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGCGTNNN--------CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT-TTTAG----------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTTTTACCG-ATG-CAGGAG-ATG-GC-TGAAGTTTCT-TTGT-CCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---AT-AACACA-GC-AAAT-CTTCAAGAC--AAAAGC-G-GTAT----G-CTACAAACACTTCGTTGACGT-TGTGTAATCATTGCACACGGC-ACCAAT-TACAATAGAATGACCCCCC-TCT--AGTACTGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTT--------CGTTT-TCCTCTTGTTT-CG--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TCGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATG
Reference ( family-2018 ) : TGAAAGAGAC-C-TTAT-TA-GCTGGTATA----A------AATAAAAAA-TATTTAA---A-TTT--------TT-AAAAATTAA--AA----AAACAAAC--TTAGAA-ATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CCACGTATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACGCAG-AGG--CCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGCGTNNN--------CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT-TTTAG----------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTTTTACCG-ATG-CAGGAG-ATG-GC-TGAAGTTTCT-TTGT-CCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---AT-AACACA-GC-AAAT-CTTCAAGAC--AAAAGC-G-GTAT----G-CTACAAACACTTCGTTGACGT-TGTGTAATCATTGCACACGGC-ACCAAT-TACAATAGAATGACCCCCC-TCT--AGTACTGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTT--------CGTTT-TCCTCTTGTTT-CG--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TCGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATG
gi|1 : GTTGT--TCGGTCCGGTAACATCTTAACAAT-T--A-CCGGACCA
gi|1 : cagtcgagtgccaggtgtttttaaacttacaggaacattTGAAAGAGAC-CCTTAT-TATGCTGGTATA----A------AATAAAAAAATATTTAA---A-CTT--------TT-TAAAATTAA--AA----AACCAA-C--TTAGAA-ATGATTAAATTTCCAAA-CACATATT-ATTTCAT-G-GAT--ACAT------TAGTCTCTACAGAATG-A-CCACATATCA-CCTCGCCATACTTCTGC-C-AGATTTCGTTTACACACAG-AGG--CCTC------GA-CG--TG------------TAACCT-----T----------G------TCATTTCCAAT-AAT--TCCCTCT-T-CACT-AACTTAT-G-A-GATGATTT-AA-AAGCATAAGTA------CAT-C-ATTTATCCGGCCTC-CGCGCGGGCTGACC-ATACGTCAATA-T-TATTACCGCATTAGAA-CAGAACAA-ATTACTAGACTTT-CT-TCCTAA-T-----------------TCCG-AAGTG-C-CTAGT-GTGTCAAAC----TTCATTACATTATTTAGGATTGCGATTAT----------AG----------G----------ACAAGTCCATGGTCGATTCTCGGACCCATTTG-GTA-TTGAATT-TAATGAGGAACATCTTTTTACCGGATG-CAGGAG-ATG-GC-TGAAGTTTCTCTTGT-CCC--TCAGTAGTCAGCT-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGAT-CG---AT----------------CTTCAAGAC--AAAGGC-G-GTATAAATG-CTACCAACACTTCGTTGACGT-TGTGTAATCATTGCACACG-C-ACCAAT-TACAATAAGAAGACCCCCCCTCT--AGTACTGAATGGTACTCATTTAAAGAATAGGGAATTTCCGGAAGTTTCGTGTA-A-GCAAATATT-TT-CTTTT--------CGTTT-TCCTCTTGTTT-CG---TT-T---CCAC---TCTTTTTT--GTTT-TCATTTTTCCTTTAATAT-TGTACCGGTCAT--TTGGTCCGACAGTATTCTAA-AAT-TT-ATTCGGACCA-TGC-ATATTTTTATCGGACTTTGCC--ACAA-G-CCGAC-GAACCTTGGGAAatttttaccgaaccgaattgaaagagacccttattatgctggtataaaataaaaaaatatttaaactttttaaaattaaaaaaccaacttagaaatgattaaatttccaaacacatattatttcatggatacattagtctctacagaatgaccacatatcacctcgccatacttctgccagatttcgtttacacacagaggcctcgacgtgtaaccttgtcatttccaataattccctcttcactaacttatgagatgatttaaaagcataagtacatcatttatccggcctccgcgcgggctgaccatacgtcaatattattaccgcattagaacagaacaaattactagactttcttcctaattccgaagtgcctagtgtgtcaaacttcattacattatttaggattgcgattataggacaagtccatggtcgattctcggacccatttggtattgaatttaatgaggaacatctttttaccggatgcaggagatggctgaagtttctcttgtccctcagtagtcagctagcatcatttattaaatctattacacgatcgatcttcaagacaaaggcggtataaatgctaccaacacttcgttgacgttgtgtaatcattgcacacgcaccaattacaataagaagaccccccctctagtactgaatggtactcatttaaagaatagggaatttccggaagtttcgtgtaagcaaatattttcttttcgttttcctcttgtttcgtttccactcttttttgttttcatttttcctttaatattgtaccggtcatttggtccgacagtattctaaaatttattcggaccatgcatatttttatcggactttgccacaagccgacgaaccttgggaagtga
gi|10 : cagtcgagtgccaggtgtttttaaacttacaggaacatttggtccggtaattgttaagatgttaccggaccgaacaacatttttaccgaaccgaatAGAC-C-TTAT-TA-GCTGGT----------------------A-TATTTCATTCA-TTTGGCTCGAATTAAAAAATTAATCAA----ACACAAACATTTAGAGTATG-CTAT--TTTTAAA---------------ATTG-GAT--A-AT------TAGTCgtga
gi|11 : tcaataccaggtgttttttaacttcacagaacattcgtcggtaattgttagagaattgttccaccgagcaacatttttaccggacgaatagaTCTCTTGAGAATGTATCCACGTATTATCTTC-C-----TTCCGTGT-AG----CCTTCAC---CAG-TG-----TC---------CG--TT------------T---TT-----T----------A------TCATTTT----------------T-T-CCATCAA---AT-G-A-AAT----TTCA-AAGTGTTTTATATATTACAT-CTATTT----GTCCTCTC--------TGACC-AT-T-TTAAAA-AATA-------ATGA-GA-CAGAA-AAGATTACTA--CTTTCCT-TC-TAATTG-TCTct
gi|12 : CTCTAT-AGATTG-TCCG-A--TG-C-ATAAT-GTGC---ACAAGTTTCAATACATT-TTTAG----------AT----------GC----------GTTTACATT--ACAAGTC-ATGGTCAATTCTCAGACC-ATTTA-GTA-TTGAATT-TA-CGgccaatactg
gi|15 : ----------G------TCATTTTCA-T-ATT--T-----T-TTCCAT-AA---AT-G-A-AAT----T-AA-AAGCGTTTA--------CAT-C-ACTT--TCGTCCTC-C--------TGA
gi|16 : CTTCCGT-C-AGAGTTCGTTTACAC---G-AGG--CCTC------GA-CG--
gi|2 : TGAAAAA--CTC-TTATATA-GCTCGTATA----A------AATAAAAAA--ATTGAA---A-TTT--------TT-AAAAATCAA--AACAAAAAATTAAC--TTAAAA-ATAATTAA--TTTCAAAACACATATTTATTTCATTGCGATTTA-AT------TAGTCTCTACA-AAT--A-CCACATATCATCTTT-CCAAACT-CCGC-CCACAGT-CGTT-ACATGCAA---G--CCTC------TA-CGATTT------------TACCCTCACGTT----------T------TCATTTTCA-TTAAT--T-----T-T-C-AT-AA---AT-GCA-AAT----A-AAGAAGCATACT---------AT-C-ATTT--TCG------------------------C-TCAAA--T-TA-------ATGA-AA-CAAAA-AT--TTACTA--CTTT-CT-TCATAA-TG-T-TCTAT-AGATTG-TCCG-A--TG-C-ATAAT-GTGC---ACAA--TTCAATACATT-TA-AG----------AT----------GC----------GTGTTACCATTACAA-TC-ATG-TCAATTCTCAGAC--ATGTA-GTA-TT-AATT-TA-CGAG-A-CATCTTT--ACCA-ATG-CAGGAA-TTG-GC-T-AAGT--CC-TTGT-CCCCTTCA-TAGTCAT-TTAGCAT-CAT-TTTATTAA--TC-TATT-CATGATTCG---A--AACACATGC-ATATTCTTCGA-AC--AAAAGC-G-GTAT----ATCTACAAACACTT-GTTGATTC-T-TGTGATCATTGCACACAGCTACCAAT-TACAATAGAATGACCCCCC-CCT--TATAC-GAATGGTACT-ATTTAAAAAA--GGGAATTTCCGGAG--TTCGT-TA-A-GCAA-TATTCTTTCTTTT--------CATTT-TTCTCTTGTTTTCG--TTT-TTTCCCAC---TCTTTT-T--AGTT-TCG-TTTTTCTTT-ATATCTGTACCGGTCATTCTCGTTCCGACATTATTCTAA-AAT-TCAA-TC-GACCAATGC-ATC-TT---TCGGACTTT-CCAAACAT-GTCCGAC-G-ACCT--GGAATGgggag
gi|3 : gattgccaagtgtttaattacaggacatttgtcccgcatgttagagatgtaccggaccaacaaccattttaccggaccgaaTGAAAGAGAC-C-TTAT-TA-GCTGGTATA----A------A-TAAAAAA-TATTTAA---ATTTT--------TT-AAAAATTAA--AA----AAACAAAC--TTAG-A-ATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-C-ACACATATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACACAG-AGG--CCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGCATAAT--------CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT----------------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTTTTACCGTATC-CAGGAG-ATG-GC-TGAAGTTTAT-TTG--CCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---AT-AACAC--GC-AAAT-CTTCAAGAC--AAAAGC-GTATAT----G-CTACAAACACTTTGTTGACGTGTGTGTAATCATTGCA-ACGGC-ACCAAT-TACAATAGAATGA-CCCCC-TCT--AGTACTGAATGGTACT-A-TTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTT--------CGTTT-TCCTCTTGTTT-CA--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TTGGTCCGGCAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTT-------AT-GTCCGAC-G-ACCTTGGGAATGa
gi|4 : ------TAGTCTCTACAGAATG-A-CCACATATC---CTC-CCAAACTTCCGC-G-AGAGTTCGTTTACACACAG-AGG--CCTCTTCGGGGAGCA--TGACCATCCTCCGTTACCCT-----T----------ACGGTGTTCATTGGCA-T-AAT--T-----TCT-CCAT-AA---ATTG-ACAAG----T-A----GCATTA---------CATAC-ATTT--TCGTCCTC-C--------TGACCGAT-C-TCAACA-T-TA-------ATTA-AA-GCAAA-AA-ATTACTA--CTCT-TC-TC-TAA-GGATCTCTAT-AGATTGGTCCG-A--TGAC-ATAGT--TGC---AT----T--ATTACATT-TTTAG----------ATGCGTTTT---AG----------G----------ACAAGTC---------------GACC-ATTTAAGTAATTGAATT-TA-CGAGGA-CAATCTTTTGCCG-ATG-CAGGAG-ATG-GCTTGAAGTTTTC-TTGTCCCC--TCAGTAG--------GCAT-CAT-TT-ATTAAA-TCTTATTACACGATTCG---ATAAACACACGC-AAAT-CTTC-AGACAAAAAAGCGG-GTA---------GTAAACACTTC-CTGACAT-TGTGTAATCATTGCACACGGC-ACCA
gi|4 : ACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagtattctaaaattcatcggaccagtgcatattttatcggactttgccacatgtccgacgaccttgggaatgactg
gi|5 : tagtctctacagaatgaccacatatcctcccaaacttccgcgagagttcgtttacacacagaggcctcttcggggagcatgaccatcctccgttacccttacggtgttcattggcataatttctccataaattgacaagtagcattacatacattttcgtcctcctgaccgatctcaacattaattaaagcaaaaaattactactcttctctaaggatctctatagattggtccgatgacatagttgcattattacatttttagatgcgttttaggacaagtcgaccatttaagtaattgaatttacgaggacaatcttttgccgatgcaggagatggcttgaagttttcttgtcccctcagtaggcatcatttattaaatcttattacacgattcgataaacacacgcaaatcttcagacaaaaaagcgggtagtaaacacttcctgacattgtgtaatcattgcacacggcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaAA--TTTGAAA-CACATACTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CCACGTATCAT----------CTTCCTC-C----------TTGTAC----------CCTT------CA-CA---G------------TAG--------T----------G------TCATTTTCA-T-AATCTT-----T-T-ACAT-AA---AT-G-A-AAC----T-AA-AAGCGTTTA--------CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ACTA-AA-CAAAA-AA--TTACTA--CTTT-CT-TC-TAA-TG-TCTCTCT-AAACTG-TCCG-A--TG-C-ATAGC-GTGC---AC----TTAGTTACATT-TTTAG----------ATGCATGCGTCAAG----------G----------ACAAGCC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGCATT-TA-CGGGGA-CATCTTT--ACCA-TTG-CAGGAG-ATG-GC-TGAAGTTTCT-T-GT-CCC--C------TCAG-T-AGCAT-CAT-TT-ATCAAAATC-TATTACCCTCTTCG---AT-AACACA-CCCAAAT-CTTCAAGAC--AAAAGC-G-GTAT----G-CTACAAACACTTTGTTGACTT-TGTCTAATCATTGCACACGGT-ACCAAT-------AGAATGACCCCCC-TCTTAAGTACTGAATGGCGCT-ATTTAAAGAAAAGGGAATTTCCGGAG--TTTGTGTA-T-GCAAATATT-TTTATTTTATTTTCCACATTT-TC-TCTT-TTT-CT--TTT-TGT-TTAT---T-TGTTTT--AGAT-TCG-CTTTCCTTTAATAT-TGTACCAGTCAT--ATGGTCTGACAGTATTCTAA-AAT-TC-A-TTGGACCAGTGC-ATG-TTTTATCAAACTTTGCC--ACGT--CCCGAC-G-ACCTTGGGAATGactg
gi|6 : aaaaaatttttttaga-C--------TGACC-ATAC-TCAAAAAT-TA-------ATTA-AAACCAAA-TA-ATTACTA--CTTT-TTGTC-TAAATG-T-TCTATGAAATT--TCCGTA--TG-CGACATTAGTGC---AC----GTCTTTACATT-TTTAG----------AT----------AGCGTTGTATAGG----------ACAAGTC-ATGGCGGATTC--GGACC-ATT-A-GT---TGAATTCTT-CGAG-A-CATCTT---ACCG-ATGGCAGGAGCATGAGC-TGAAGTTGCT-TTGT-GCC--TC------CAG---AGCATTCATGTT-ATTAAA-TC-TAT-AGACG-TTCGCGCAT-A-CACA-GC-AAAT-CTTTAAGAC--AAAAGC-G-GTAT----G-CTACAAACACTTCGTTGGTGT-TGTGTAATCAATGCACCATGT-AC--ATGTACAATAGAATGATCCCCC-TCT--AGTAATGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCATGTA-T-GCAAATA-----------------------T-TCCTC--GTTT-TG--TTT-T---CTAC---TC------------------TTTCCTTTAATAT-TGTATCGGTCAT--TTGGTCCGACAATATTCTAA-AAT-TC-A-TCTGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATGa
gi|7 : CAT--TCGGTCCGATAATG-TCAGA-GATGTT-A-CCAGACC-GAACAACA-TTTTACCGGACa
gi|7 : taccaaggtgtttttaacttcacacgaAGAC-C-TTAT-CA-GCTGGTATATTTCATTGGCTAATGAAAAA-TA--------A-T----------------AAT-----GA----AAACA-----TTA-------ATAAA--TTTCATA-CACATGTTTATTTCAA-A-GAT--A-ATAAGGCCTAGTCTCTACAGAATG-A-C----------------CAAAGTGACGC-C-------------CACGCATCATGTTCTTC---------CA--TG------------TGCCCT-----TCACAATATTGG------TCGTTTTCG-T-CATCTT-----T-T-CCGT-AG---AT-G-A-CAT----T-GA-AAGCGTCTA--------CAT-C-ATTT-----TCCTC-C--------TGATC-AT-C-TGAAAA-T-TA-------A--A-TA-C---A-AA-ATTACTA--Ccgaattgaagaccttatcagctggtatatttcattggctaatgaaaaataataatgaaaacattaataaatttcatacacatgtttatttcaaagataataaggcctagtctctacagaatgaccaaagtgacgcccacgcatcatgttcttccatgtgcccttcacaatattggtcgttttcgtcatcttttccgtagatgacattgaaagcgtctacatcattttcctcctgatcatctgaaaattaaatacaaaattactacatcatcaaatgaaaaacacattttatagatt
gi|8 : taccaaggtgtttttaacttcacacgacattcggtccgataatgtcagagatgttaccagaccgaacaacattttaccggaccgaattgaAT-CTTCAAGAC--A---GC-G-GTAT----G-CTACA-------------CAT-TGT-----CATTGCACATGGT-ACCAAT-------AG-------------CT--AGTAATGAATGGTGCT-ATTTAAAGAATAAGGAATTTCCGGAG--TTCATGTACATGCAAATATT-TTTATTTT--------CGTTT-TC--------------TTT-T---CCACATTTTTTTTTT--AGTT-TTG-TTTTCCTTTAATAT-TGTACGGGTCAT--ATGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGAACAGTGC-ATA-TTTTATCGGACTTTGTC--ACAT-GTCCGAC-G-ACCTTatcatcaaatgaaaaacacattttatagatt
gi|9 : CAAAT-TT-ATTTTATT--------CATTTATCGGATTATTC-CAACTTTAC---CCAA---TCATTTTCCCAGTTCTCA-TTG-CCTCTA-CAT-T--ACCGGACAT--TTGGTCCGTCACAATTCTAA-CTT-TT-A-CCGGACCAAGGC-TAA-TTTTACCGGAC-TTGTC--CGATGGTCCGACAA-ACCTTCGGAA
blockSeqs : T . A . TTTCATTGGCTAA T TC TTCATTTGGCTCGAATTAA T TC CAAA AACAT GAGT . A T T C TT . AAGGCC TAT G ATCTTC A CAGAGTT C GCATCATGTT TTCGGGGAGCATGACCATCCTCCGTTACCCTTACGGTGT . T CTT C T C . T C C . T G TTTATATATTA A T T T . G A . A A . . A A . GA . C G A T ATC G GG T . A G A . AAGT . T ATGCGTGTTACCATT . T . A A C . G . TT T G C A T . C CTTCA T TT T G T A T A CGC AAA AT C T AA G T AT TG T G T GT A C . TA . T . CAT C TC ATTTTCCA A C T G CAAC A TTC ATT T T CC C . C TC . G A T A . G AA G A .
blockSeqs : . . . . AAA T GA ATTTTTTA C . . AAC AAA . . T T . . . . A A ATCTTT A CCACAGT T ACAGAGG CATGTGCCCTTCACAATATTGG . . CTT . . . . . . . . . . TTA . . T . . . . . . . . . . A . A . . . . A TC . G . . . . . . AA . T ATGCATGCGTCAAGG . T . . . . . G . TT . . . . . . . TCAG T T . . . . . A . AA AC . . . . . G TG G . . T A C . . . A . A . TC . . C T G TCG . GT . T T . . . . . . . . . . . G . . . .
blockSeqs : . . . . AA T TA ATTTTTA T . . AAC GA . . T T . . . . C A ATCCTC A CAGAGTT T ACAGAGG TACGATTTTACCCTCACGTTT . . T . . . . . . . . . . ACT . . T . . . . . . . . . . A . A . . . . . TC . G . . . . . . . . T ATAGCGTTGTATAGG . T . . . . . G . . . . . . . . . TCAG T T . . . . . A . AA A . . . . . G CG A . . T A T . . . T . A . TA . . C T G CA . . . T T . . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . AT . . . . . . . T T . . . . A A CTC A GAGAGTT T CAGTG GACGTGTACCCTTG . . T . . . . . . . . . . AAT . . T . . . . . . . . . . C . A . . . . . TC . G . . . . . . . . T ATGCGTTTACATT . T . . . . . . . . . . . . . . . TC . . . . . . . C . AA A . . . . . G G T . . . A . . . . T . T . TA . . G T A CT . . . T T . . . . . . . . . . . G . . . .
blockSeqs : . . . . . . . . A G AT . GTAG T GCAAG CACAGTAGTG . . T . . . . . . . . . . TTA . . T . . . . . . . . . . A . A . . . . . T . G . . . . . . . . . ATGCGTTTTAGG . . . . . . . . . . . . . . . . . C . . . . . . . . . A . . . . . . G C G . . . . . . . . . . T . TT . . . . . TG . . . A . . . . . . . . . . . . G . . . .
blockSeqs : . A . . . C . GAGG CGTTTTTTA . . T . . . . . . . . . . CTA . . . . . . . . . . . . . C . . . . . . . T . . . . . . . . . . . ATAGG . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : C . . . . . . . . . . . . . . . TA . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : AA*********** T* ATTTTTA************* AAC** GA** ** GCAGAG**** T******* *** **** NTA******** T** ******** ******* ** TC* G* ** *** ** T** AA* AC G***** ** TN
originalCons : TGAAAGAGAC-C-TTAT-TA-GCTGGTATA----A------AATAAAAAA-TATTTAA---A-TTT--------TT-AAAAATTAA--AA----AAACAAAC--TTAGAA-ATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CCACGTATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACGCAG-AGG--CCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGCGTNNN--------CAT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT-TTTAG----------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTTTTACCG-ATG-CAGGAG-ATG-GC-TGAAGTTTCT-TTGT-CCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---AT-AACACA-GC-AAAT-CTTCAAGAC--AAAAGC-G-GTAT----G-CTACAAACACTTCGTTGACGT-TGTGTAATCATTGCACACGGC-ACCAAT-TACAATAGAATGACCCCCC-TCT--AGTACTGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTT--------CGTTT-TCCTCTTGTTT-CG--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TCGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATG
finalCons : TGAAAGAGAC-C-TTAT-TA-GCTGGTATAAA-----------TAAAAAAT-ATTTAAATTTTTA-------------AAAATTAA--AA----AAACAAAC--TTAGA--ATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CCACGTATCATCCTC-CCAAACTTCCGC-C-AGAGTTCGTTTACACGCAGAG----CCTC------GA-CG--TG------------TACCCT-----T----------G------TCATTTTCA-T-AATT-------T-T-CCAT-AA---AT-G-A-AAT----T-AA-AAGCGTNTA--------CAT-C-ATTTT--CGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TGTC-TCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT-TTTAG----------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGACC-ATTTA-GTA-TTGAATT-TA-CGAGGA-CATCTTT--ACCG-ATG-CAGGAG-ATG-GC-TGAAGTTTCT-TTGT-CCC--TCAGTAGTCAGT--AGCAT-CAT-TT-ATTAAA-TC-TATTACACGATTCG---ATAA-CACACGC-AAAT-CTTCAAGAC--AAAAGC-G-GTATG-----CTACAAACACTTCGTTGACGT-TGTGTAATCATTGCACACGGC-ACCAAT-TACAATAGAATGACCCCCC-TCT--AGTACTGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTNTTTT--------CGTTT-TCCTCTTGTTT-CG--TTT-T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TCGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACAAATTGAAGGACCTTGTGAGTAATTTTGTCTTATCAAAGAATTAATTAATTGCAATTTGCTTCTGACTTGACTATTTGATATTATTAACA
Unaligned ( gi|14 ): TAGTCTAAAGTTTTTTAAATAACTTCATTGGACATTTGGTCCGTTAATGTTAGAGATGTTACCGGACCG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 44444444444444 1111 111111111 11 1111 11111 2222 111111 111111111111 1111111 555555555555555555555555555555555555555555555555555555555 22222222 1111 222222222222 111 11111111 1 1111111 1 1 111 2222 000000000000000000000000000000000000000000000 11 11 2222222222222222 11111111 11 1111 111 222222222 11111 111111 1111
lowQualScore : 8 8 8 8 66666666666666 3 9999 0 0 999999999 3 11 7777 22222 3 2222 0 99 6 3 7 6 99 6 666666 555 5 666666666666 0 4444444 3 0 777777777777777777777777777777777777777777777777777777777 5 5 00000000 5 5 5 888 5 5 0000 5 555555555555 5 5 5 222 0 4 66666666 5 0 5 5 5 6666666 5 5 3 5 88 66 5 5 1 1 555 5 66 5 77 5 5 5 000 0000 5 1 333333333333333333333333333333333333333333333 5 0 1 5 5 5 5 5 33 6 99 55 888 6 6 6 6 6 1111111111111111 6 6 6 6 6 3 88888888 22 5 77 5 5 2222 5 66 1 5 0 3 5 4 99 1 6 2 99 6 3 99 333 5 5 3 11 5 111111111 1 3 11111 666666 0000 1 1 77 5 5 5 66 0 4 4 4 4 4 4 2 66 5 5 5
lowQualScore : . . . . .............. . .... . . ......... . .. .... ..... . .... . .. . . . . .. . ...... ... . ............ . ....... . . ......................................................... . . ........ . . . ... . . .... . ............ . . . ... . . ........ . . . . . ....... . . . . .. .. . . . . ... . .. . .. . . . ... .... . . ............................................. . . . . . . . . .. . .. .. ... . . . . . ................ . . . . . . ........ .. . .. . . .... . .. . . . . . . .. . . . .. . . .. ... . . . .. . ......... . . ..... ...... .... . . .. . . . .. . . . . . . . . .. . . .
lowQualScore : 0 0 0 0 44444444444444 8 8888 8 6 444444444 8 00 0000 44444 2 8888 8 22 7 2 3 7 22 7 444444 999 7 000000000000 1 8888888 1 9 666666666666666666666666666666666666666666666666666666666 0 0 22222222 0 0 0 888 0 0 6666 0 111111111111 0 0 0 000 1 4 11111111 0 0 0 0 0 2222222 0 0 1 0 22 99 7 7 4 4 888 7 44 7 99 7 7 7 000 0000 7 4 777777777777777777777777777777777777777777777 7 7 4 7 7 7 7 7 33 7 22 88 777 7 7 7 7 7 0000000000000000 7 7 7 7 7 2 88888888 55 7 99 7 7 1111 7 00 7 7 7 0 7 3 88 7 7 5 22 7 5 22 000 0 7 0 11 7 444444444 4 0 11111 777777 7777 7 4 99 7 7 7 11 7 0 0 0 0 4 4 5 99 0 0 0
consensus : TGAAAGAGAC-C-TTAT-TA-GCTGGTATA-----------AAATAAAAAA-T--ATTTAAATT---TTT-AAAAATTAA--AA----AAACAAAC--TTAGA--AATGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CC-ACGTATCATCCTC-CCAAACTTCCGC--C-AGAGTTCGTTTACACGCAGAGGCCTC------GA-CG--TG------------TACCCT-----TG------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-GA-AAT----T-AAAAGCGTN--T--------AC-AT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT-TTTAG----------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGA-CCATTTA-GTA-TTGAATT-T-ACGAGG-ACA-TC--TTT--ACC-G-ATG-CAGGAG-ATG-GCT-GAAGTTTCT-TTGTCCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TCT-ATTACACGATTCG---ATAA-CACACGCAAAT-CTTCAAGACAAAA--GCG-G-T----ATG-CTACAAACACTTCGTTGACGT-TGTGTAATCATTGCACACGGC-ACCAAT-TACAATAGAATGA-CCCCCCTCT--AGTACTGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTTCGTTT-TC--------CTCTTGTTT-CG--TTT--T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TCGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATG
Reference ( family-2018 ) : TGAAAGAGAC-C-TTAT-TA-GCTGGTATA-----------AA-TAAAAAA-T--ATTTAAATT---TTT-AAAAATTAA--AA----AAACAAAC--TTAGA--A-TGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CC-ACGTATCATCCTC-CCAAACTTCCGC--C-AGAGTTCGTTTACACGCAGAG-CCTC------GA-CG--TG------------TACCCT-----TG------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-GA-AAT----T-AAAAGCGTN--T--------AC-AT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT-TTTAG----------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGA-CCATTTA-GTA-TTGAATT-T-ACGAGG-ACA-TC--TTT--ACC-G-ATG-CAGGAG-ATG-GCT-GAAGTTTCT-TTGTCCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TCT-ATTACACGATTCG---ATAA-CACACGCAAAT-CTTCAAGACAAAA--GCG-G-T----ATG-CTACAAACACTTCGTTGACGT-TGTGTAATCATTGCACACGGC-ACCAAT-TACAATAGAATGA-CCCCCCTCT--AGTACTGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTNTTTTCGTTT-TC--------CTCTTGTTT-CG--TTT--T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TCGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATG
gi|1 : GTTGT--TCGGTCCGGTAACATCTTAACAAT-T--A-CCGGACCA
gi|1 : cagtcgagtgccaggtgtttttaaacttacaggaacattTGAAAGAGAC-CCTTAT-TATGCTGGTATA-----------AAATAAAAAAAT--ATTTAAACT---TTT-TAAAATTAA--AA----AACCAA-C--TTAGA--AATGATTAAATTTCCAAA-CACATATT-ATTTCAT-G-GAT--ACAT------TAGTCTCTACAGAATG-A-CC-ACATATCA-CCTCGCCATACTTCTGC--C-AGATTTCGTTTACACACAGAGGCCTC------GA-CG--TG------------TAACCT-----TG------TCATTTCCAAT-AAT--TCCCTCT-T-CACT-AACTTAT-GA-GATGATTT-AAAAGCATAAGT--------AC-AT-C-ATTTATCCGGCCTC-CGCGCGGGCTGACC-ATACGTCAATA-T-TATTACCGCATTAGAA-CAGAACAA-ATTACTAGACTTT-CT-TCCTAA-T-----------------TCCG-AAGTG-C-CTAGT-GTGTCAAAC----TTCATTACATTATTTAGGATTGCGATTAT----------AG----------G----------ACAAGTCCATGGTCGATTCTCGGACCCATTTG-GTA-TTGAATT-TAATGAGGAACA-TCTTTTT--ACCGG-ATG-CAGGAG-ATG-GCT-GAAGTTTCTCTTGTCCC--TCAGTAGTCAGCT-AGCAT-CAT-TT-ATTAAA-TCT-ATTACACGA-TCG-----------------AT-CTTCAAGACAAAG--GCG-G-TATAAATG-CTACCAACACTTCGTTGACGT-TGTGTAATCATTGCACAC-GC-ACCAAT-TACAATAAGAAGACCCCCCCTCT--AGTACTGAATGGTACTCATTTAAAGAATAGGGAATTTCCGGAAGTTTCGTGTA-A-GCAAATA-T-TTTCTTTTCGTTT-TC--------CTCTTGTTT-CG---TT--T---CCAC---TCTTTTTT--GTTT-TCATTTTTCCTTTAATAT-TGTACCGGTCAT--TTGGTCCGACAGTATTCTAA-AAT-TT-ATTCGGACCA-TGC-ATATTTTTATCGGACTTTGCC--ACAA-G-CCGAC-GAACCTTGGGAAatttttaccgaaccgaattgaaagagacccttattatgctggtataaaataaaaaaatatttaaactttttaaaattaaaaaaccaacttagaaatgattaaatttccaaacacatattatttcatggatacattagtctctacagaatgaccacatatcacctcgccatacttctgccagatttcgtttacacacagaggcctcgacgtgtaaccttgtcatttccaataattccctcttcactaacttatgagatgatttaaaagcataagtacatcatttatccggcctccgcgcgggctgaccatacgtcaatattattaccgcattagaacagaacaaattactagactttcttcctaattccgaagtgcctagtgtgtcaaacttcattacattatttaggattgcgattataggacaagtccatggtcgattctcggacccatttggtattgaatttaatgaggaacatctttttaccggatgcaggagatggctgaagtttctcttgtccctcagtagtcagctagcatcatttattaaatctattacacgatcgatcttcaagacaaaggcggtataaatgctaccaacacttcgttgacgttgtgtaatcattgcacacgcaccaattacaataagaagaccccccctctagtactgaatggtactcatttaaagaatagggaatttccggaagtttcgtgtaagcaaatattttcttttcgttttcctcttgtttcgtttccactcttttttgttttcatttttcctttaatattgtaccggtcatttggtccgacagtattctaaaatttattcggaccatgcatatttttatcggactttgccacaagccgacgaaccttgggaagtga
gi|10 : cagtcgagtgccaggtgtttttaaacttacaggaacatttggtccggtaattgttaagatgttaccggaccgaacaacatttttaccgaaccgaatAGAC-C-TTAT-TA-GCTGGTATA-----------TT-T----CA-TTCATTTGGCTCGAATTA-AAAAATTAATCAA----ACACAAACATTTAGAGTA-TG-CTAT--TTTTAAA---------------ATTG-GAT--A-AT------TAGTCgtga
gi|11 : tcaataccaggtgttttttaacttcacagaacattcgtcggtaattgttagagaattgttccaccgagcaacatttttaccggacgaatagaTCTCTTGAGAATGTATCC-ACGTATTATCTTC-C-----TTCCGTG-T-AG----CCTTCAC---CAGTG-TC-----------CG--TT------------T---TT-----TA------TCATTTT----------------T-T-CCATCAA---AT-GA-AAT----TTCAAAGTGTT--TTATATATTAC-AT-CTATTT----GTCCTCTC--------TGACC-AT-T-TTAAAA-AATA-------ATGA-GA-CAGAA-AAGATTACTA--CTTTCCT-TC-TAATTG-TCTct
gi|12 : CTCTAT-AGATTG-TCCG-A--TG-C-ATAAT-GTGC---ACAAGTTTCAATACATT-TTTAG----------AT----------GC----------GTTTACATT--ACAAGTC-ATGGTCAATTCTCAGA-CCATTTA-GTA-TTGAATT-T-ACGgccaatactg
gi|15 : G------TCATTTTCA-T-ATT--T-----T-TTCCAT-AA---AT-GA-AAT----T-AAAAGCGTT--T--------AC-AT-C-ACTT--TCGTCCTC-C--------TGA
gi|16 : CTTCCGT--C-AGAGTTCGTTTACACG-AG-G-CCTC------GA-CG--
gi|2 : TGAAAAA--CTC-TTATATA-GCTCGTATA-----------AAATAAAAAA----ATTGAAATT---TTT-AAAAATCAA--AACAAAAAATTAAC--TTAAA--AATAATTAA--TTTCAAAACACATATTTATTTCATTGCGATTTA-AT------TAGTCTCTACA-AAT--A-CC-ACATATCATCTTT-CCAAACT-CCGC--CCACAGT-CGTT-ACATGCA-AG-CCTC------TA-CGATTT------------TACCCTCACGTTT------TCATTTTCA-TTAAT--T-----T-T-C-AT-AA---AT-GC-AAA----T-AAAGAAGCA--T--------ACTAT-C-ATTT--TCG------------------------C-TCAAA--T-TA-------ATGA-AA-CAAAA-AT--TTACTA--CTTT-CT-TCATAA-TG-T-TCTAT-AGATTG-TCCG-A--TG-C-ATAAT-GTGC---ACAA--TTCAATACATT-TA-AG----------AT----------GC----------GTGTTACCATTACAA-TC-ATG-TCAATTCTCAGA-C-ATGTA-GTA-TT-AATT-T-ACGAG--ACA-TC--TTT--ACC-A-ATG-CAGGAA-TTG-GCT--AAGT--CC-TTGTCCCCTTCA-TAGTCAT-TTAGCAT-CAT-TTTATTAA--TCT-ATT-CATGATTCG---A-AA-CACATGCATATTCTTCGA-ACAAAA--GCG-G-T----ATATCTACAAACACTT-GTTGATTC-T-TGTGATCATTGCACACAGCTACCAAT-TACAATAGAATGA-CCCCCCCCT--TATAC-GAATGGTACT-ATTTAAAAAA--GGGAATTTCCGGAG--TTCGT-TA-A-GCAA-TATTCTTTCTTTTCATTT-TT--------CTCTTGTTTTCG--TTT--TTTCCCAC---TCTTTT-T--AGTT-TCG-TTTTTCTTT-ATATCTGTACCGGTCATTCTCGTTCCGACATTATTCTAA-AAT-TCAA-TC-GACCAATGC-ATC-TT---TCGGACTTT-CCAAACAT-GTCCGAC-G-ACCT--GGAATGgggag
gi|3 : gattgccaagtgtttaattacaggacatttgtcccgcatgttagagatgtaccggaccaacaaccattttaccggaccgaaTGAAAGAGAC-C-TTAT-TA-GCTGGTATA-----------AA-TAAAAAA-T--ATTTAAATT---TTTTAAAAATTAA--AA----AAACAAAC--TTAGA--A-TGATTAA--TTTCAAA-CACATATTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-C-AC-ACATATCATCCTC-CCAAACTTCCGC--C-AGAGTTCGTTTACACACAGAGGCCTC------GA-CG--TG------------TACCCT-----TG------TCATTTTCA-T-AAT--T-----T-T-CCAT-AA---AT-GA-AAT----T-AAAAGCATA--A--------TC-AT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ATTA-AA-CAAAA-AA-ATTACTA--CTTT-CT-TC-TAA-TG-TCTCTAT-AGATTG-TCCG-A--TG-C-ATAGT-GTGC---AC----TTCATTACATT----------------AT----------AG----------G----------ACAAGTC-ATGGTCGATTCTCGGA-CCATTTA-GTA-TTGAATT-T-ACGAGG-ACA-TC--TTTTTACC-GTATC-CAGGAG-ATG-GCT-GAAGTTTAT-TTG-CCC--TCAGTAGTCAG-T-AGCAT-CAT-TT-ATTAAA-TCT-ATTACACGATTCG---ATAA-CAC--GCAAAT-CTTCAAGACAAAA--GCGTA-T----ATG-CTACAAACACTTTGTTGACGTGTGTGTAATCATTGCA-ACGGC-ACCAAT-TACAATAGAATGA-CCCCC-TCT--AGTACTGAATGGTACT-ATT-AAAGAATAGGGAATTTCCGGAG--TTCGTGTA-A-GCAAATATT-TTTCTTTTCGTTT-TC--------CTCTTGTTT-CA--TTT--T---CCAC---TCTTTTTT--AGTT-TCG-TTTTCCTTTAATAT-TGTACCGGTCAT--TTGGTCCGGCAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTT-------AT-GTCCGAC-G-ACCTTGGGAATGa
gi|4 : ------TAGTCTCTACAGAATG-A-CC-ACATATC---CTC-CCAAACTTCCGC--G-AGAGTTCGTTTACACACAGAGGCCTCTTCGGGGAGCA--TGACCATCCTCCGTTACCCT-----TACGGTGTTCATTGGCA-T-AAT--T-----TCT-CCAT-AA---ATTGACAAG----T-A---GCAT---T--------AC-ATAC-ATTT--TCGTCCTC-C--------TGACCGAT-C-TCAACA-T-TA-------ATTA-AA-GCAAA-AA-ATTACTA--CTCT-TC-TC-TAA-GGATCTCTAT-AGATTGGTCCG-A--TGAC-ATAGT--TGC---AT----T--ATTACATT-TTTAG----------ATGCGTTTT---AG----------G----------ACAAGTC---------------GA-CCATTTAAGTAATTGAATT-T-ACGAGG-ACAATC--TTTT-GCC-G-ATG-CAGGAG-ATG-GCTTGAAGTTTTC-TTGTCCCC-TCAGTAG--------GCAT-CAT-TT-ATTAAA-TCTTATTACACGATTCG---ATAAACACACGCAAAT-CTTCA-GACAAAAAAGCG-GGT----A-----GTAAACACTTC-CTGACAT-TGTGTAATCATTGCACACGGC-ACCA
gi|4 : ACAGTATTCTAA-AAT-TC-A-TCGGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacagtattctaaaattcatcggaccagtgcatattttatcggactttgccacatgtccgacgaccttgggaatgactg
gi|5 : tagtctctacagaatgaccacatatcctcccaaacttccgcgagagttcgtttacacacagaggcctcttcggggagcatgaccatcctccgttacccttacggtgttcattggcataatttctccataaattgacaagtagcattacatacattttcgtcctcctgaccgatctcaacattaattaaagcaaaaaattactactcttctctaaggatctctatagattggtccgatgacatagttgcattattacatttttagatgcgttttaggacaagtcgaccatttaagtaattgaatttacgaggacaatcttttgccgatgcaggagatggcttgaagttttcttgtcccctcagtaggcatcatttattaaatcttattacacgattcgataaacacacgcaaatcttcagacaaaaaagcgggtagtaaacacttcctgacattgtgtaatcattgcacacggcaccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaAA--TTTGAAA-CACATACTTATTTCATTG-GAT--A-AT------TAGTCTCTACAGAATG-A-CC-ACGTATCAT----------CTTCCTC--C----------TTGTAC-------CCTT------CA-CA---G------------TAG--------TG------TCATTTTCA-T-AATCTT-----T-T-ACAT-AA---AT-GA-AAC----T-AAAAGCGTT--T--------AC-AT-C-ATTT--TCGTCCTC-C--------TGACC-AT-C-TCAAAA-T-TA-------ACTA-AA-CAAAA-AA--TTACTA--CTTT-CT-TC-TAA-TG-TCTCTCT-AAACTG-TCCG-A--TG-C-ATAGC-GTGC---AC----TTAGTTACATT-TTTAG----------ATGCATGCGTCAAG----------G----------ACAAGCC-ATGGTCGATTCTCGGA-CCATTTA-GTA-TTGCATT-T-ACGGGG-ACA-TC--TTT--ACC-A-TTG-CAGGAG-ATG-GCT-GAAGTTTCT-T-GTCCC--C------TCAG-T-AGCAT-CAT-TT-ATCAAAATCT-ATTACCCTCTTCG---ATAA-CACACCCAAAT-CTTCAAGACAAAA--GCG-G-T----ATG-CTACAAACACTTTGTTGACTT-TGTCTAATCATTGCACACGGT-AC-------CAATAGAATGA-CCCCCCTCTTAAGTACTGAATGGCGCT-ATTTAAAGAAAAGGGAATTTCCGGAG--TTTGTGTA-T-GCAAATATT-TTTATTTT-ATTT-TCCACATTTTCTCTT-TTT-CT--TTTTGT---TTA----TTTGTTTT--AGAT-TCG-CTTTCCTTTAATAT-TGTACCAGTCAT--ATGGTCTGACAGTATTCTAA-AAT-TC-A-TTGGACCAGTGC-ATG-TTTTATCAAACTTTGCC--ACGT--CCCGAC-G-ACCTTGGGAATGactg
gi|6 : aaaaaatttttttaga-C--------TGACC-ATAC-TCAAAAAT-TA-------ATTA-AAACCAAA-TA-ATTACTA--CTTT-TTGTC-TAAATG-T-TCTATGAAATT--TCCGTA--TG-CGACATTAGTGC---AC----GTCTTTACATT-TTTAG----------AT----------AGCGTTGTATAGG----------ACAAGTC-ATGGCGGATTC--GGA-CCATT-A-GT---TGAATTCT-TCGAG--ACA-TC--TT---ACC-G-ATGGCAGGAGCATGAGCT-GAAGTTGCT-TTGTGCC--TC------CAG---AGCATTCATGTT-ATTAAA-TCT-AT-AGACG-TTCGCGCATA--CACA-GCAAAT-CTTTAAGACAAAA--GCG-G-T----ATG-CTACAAACACTTCGTTGGTGT-TGTGTAATCAATGCACCATGT-AC--ATGTACAATAGAATGA-TCCCCCTCT--AGTAATGAATGGTACT-ATTTAAAGAATAGGGAATTTCCGGAG--TTCATGTA-T-GCAAATA---------------T-TC--------CTC--GTTT-TG--TTT--T---CTAC---TC------------------TTTCCTTTAATAT-TGTATCGGTCAT--TTGGTCCGACAATATTCTAA-AAT-TC-A-TCTGACCAGTGC-ATA-TTTTATCGGACTTTGCC--ACAT-GTCCGAC-G-ACCTTGGGAATGa
gi|7 : CAT--TCGGTCCGATAATG-TCAGA-GATGTT-A-CCAGACC-GAACAACA-TTTTACCGGACa
gi|7 : taccaaggtgtttttaacttcacacgaAGAC-C-TTAT-CA-GCTGGTATATTTCATTGGCTAA-TGAAAAA-T--A-----AT-----------AAT-----GA----AAACA-----TTA--------ATAAA--TTTCATA-CACATGTTTATTTCAA-A-GAT--A-ATAAGGCCTAGTCTCTACAGAATG-A-CCAAAGTGACG----C-CCA------CGCATC-AT-GTTCTTCCATGTGC-----CCTT------CA-CA---A------------TAT--T-----GG------TCGTTTTCG-T-CATCTT-----T-T-CCGT-AG---AT-GA-CAT----T-GAAAGCGTC--T--------AC-AT-C-ATTT-----TCCTC-C--------TGATC-AT-C-TGAAAA-T-TA-------A--A-TA-C---A-AA-ATTACTA--Ccgaattgaagaccttatcagctggtatatttcattggctaatgaaaaataataatgaaaacattaataaatttcatacacatgtttatttcaaagataataaggcctagtctctacagaatgaccaaagtgacgcccacgcatcatgttcttccatgtgcccttcacaatattggtcgttttcgtcatcttttccgtagatgacattgaaagcgtctacatcattttcctcctgatcatctgaaaattaaatacaaaattactacatcatcaaatgaaaaacacattttatagatt
gi|8 : taccaaggtgtttttaacttcacacgacattcggtccgataatgtcagagatgttaccagaccgaacaacattttaccggaccgaattgaAT-CTTCAAGACA-----GCG-G-T----ATG-CTACA-------------CAT-TGT-----CATTGCACATGGT-ACCAAT-------AG-------------CT--AGTAATGAATGGTGCT-ATTTAAAGAATAAGGAATTTCCGGAG--TTCATGTACATGCAAATATT-TTTATTTTCGTTT-TC----------------------TTT--T---CCACATTTTTTTTTT--AGTT-TTG-TTTTCCTTTAATAT-TGTACGGGTCAT--ATGGTCCGACAGTATTCTAA-AAT-TC-A-TCGGAACAGTGC-ATA-TTTTATCGGACTTTGTC--ACAT-GTCCGAC-G-ACCTTatcatcaaatgaaaaacacattttatagatt
gi|9 : CAAAT-TT-ATTTTATTCATTTATC--------GGATTATTC-CAACTTTA-C---CCAA---TCATTTTCCCAGTTCTCA-TTG-CCTCTA-CAT-T--ACCGGACAT--TTGGTCCGTCACAATTCTAA-CTT-TT-A-CCGGACCAAGGC-TAA-TTTTACCGGAC-TTGTC--CGATGGTCCGACAA-ACCTTCGGAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): ACAAATTGAAGGACCTTGTGAGTAATTTTGTCTTATCAAAGAATTAATTAATTGCAATTTGCTTCTGACTTGACTATTTGATATTATTAACA
Unaligned ( gi|14 ): TAGTCTAAAGTTTTTTAAATAACTTCATTGGACATTTGGTCCGTTAATGTTAGAGATGTTACCGGACCG