lowQualScore : 11111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 1 666666666666 4444 11 2222222 44444444444444444444444444444444444444444444444444444444444 1111 444 3333333 4 33333 6666666 88888888888 33 3 1111 1 1 4 2222222222222222222222 555555555555555555 222 555555555555555 333 1 11 11 11 11 1 222222222222222 222222222222222222222222222222222222 1111 1 2 9999999999999999999999999999999 111 111 1 8888888888888888888888888888888888888 11 1 1 1 1 222 33 1 11 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 44444444444 11 22222 1 55555555555555555555555555555555555555555555555555 4 77777 111 111111 1111111 22 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3333 1 2 44444444444444444 1 111 1 1111
lowQualScore : 4 333333333333 7777 11 8 5555555 8 44444444444444444444444444444444444444444444444444444444444 0000 888 3333333 0 66666 6666666 33333333333 22 4 4444 6 6 1 5 0 7777777777777777777777 66 777777777777777777 0 444 444444444444444 8 000 11 0 99 8 7 99 5 11 99 0 2 555555555555555 8 8 777777777777777777777777777777777777 4444 8 0 0 8 8 9999999999999999999999999999999 444 8 444 0 8 7777777777777777777777777777777777777 33 0 0 0 0 222 2 33 0 33 5 9 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 22222222222 5 8 11 5 00000 2 77777777777777777777777777777777777777777777777777 66 66 0 00000 44 888 999999 5 66 66 4444444 4 11 4 55 8 4 4 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2 5 66 1 2 2222 7 3 3 3 22222222222222222 0 2 777 77 777 1 2222
lowQualScore : . ............ .... .. . ....... . ........................................................... .... ... ....... . ..... ....... ........... .. . .... . . . . . ...................... .. .................. . ... ............... . ... .. . .. . . .. . .. .. . . ............... . . .................................... .... . . . . . ............................... ... . ... . . ..................................... .. . . . . ... . .. . .. . . ................................................................................................................................................................................................................................................................................................ . ........... . . .. . ..... . .................................................. .. .. . ..... .. ... ...... . .. .. ....... . .. . .. . . . ........................................................................................... . . .. . . .... . . . . ................. . . ... .. ... . ....
lowQualScore : 5 000000000000 0000 00 0 0000000 0 00000000000000000000000000000000000000000000000000000000000 8888 777 7777777 0 00000 7777777 55555555555 77 3 2222 7 7 7 4 0 3333333333333333333333 99 222222222222222222 7 999 555555555555555 0 000 88 4 22 0 8 44 6 00 00 6 2 444444444444444 0 0 222222222222222222222222222222222222 8888 0 6 4 0 0 4444444444444444444444444444444 000 0 888 0 2 8888888888888888888888888888888888888 22 0 0 0 0 000 0 88 0 88 8 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 66666666666 0 0 22 0 88888 0 44444444444444444444444444444444444444444444444444 99 99 0 99999 44 666 444444 0 11 11 4444444 0 55 0 55 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 0 99 4 5 8888 3 3 7 0 00000000000000000 8 0 666 99 666 4 1111
consensus : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---TA--TAAAAAAA-A---------A-------AATCCG---------T--------T---TT-T--T-------TTTTG-T-ACAA---ATTCCGATTTT---A-AATGTTA-TGTGG--CCCGATCTGAATC--TCAGCAAAGCG---CTTG----ATTTAAC-CAAAA-GT----GTTA-TTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-CAGCAT--GCTGCTAGTCGGATGGCAGA--GATG-TCT-T-----TG-AACGGAAATTTACTTAACTGATGA-----ATC---GGCTG-AA--GAAACAATNTTTTCAC-NTAGGTTT-AAAGATTCTTAT-ATAGAAA--TAT--GGCCGTTTTTGACCAATC--GTCCAAAGGTG-AAAGGT-ATG-T-GGTTA-----TTGT---------------------TCA---GTAT-GTGAAAATGAAC-T-TCGCAT--TTTGCG--C-----G----C-G------GGGAA---GGAATGAT-TGCCGTC-GACATGCAG-AATCAAAGTCTC-GA-T-CTCATCGT-GAATA-T---AAAA-TTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAACTCTA-AGACTC-GGA--TTGACCGACTAAAGC--AAGGC----TGA-----A-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCC---C---C---GG-CCAGT-CT---------T-A-GTCTATAACGAT---GATCAG-AACCTTTCA----G-ACT---------GA-GGT-------TTC-------TA-GA---TTCAGA---------GTGTC-TACT---GGTAGTGAAGA----------G----AC------------C-----------ATTAACATGC-----TGTTGATGTGAAATCACT-GGATCGTTGAAAGG--A--CATATTACAAAA--------------------AAAT--------AGTA--------TA-A--TT--CTC--AGAT-TTCATTGA--AANTGTGTG-TAACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--T-T--T-C-AGT-CTGT----------C------T-A-----GTC----TAAA------C-----TGATAA---------G-TTA--C--------T-TT-------CAAT-GT--ATTATTTCAAAATTTCCT-G--GGACCAAGAAA-ATGAC-TNGATCATTCAATCTCAAATCATTGGACATACATGTATTACAAAAAAATAGAATATTCTC--AG-ATTT-CATTGAAAATG----TGTAA
Reference ( gi|2 ) : CTAGAAAGGTAAAAAA-AC-TTGTACG-TCGTCG-TGCGT--AA-AATTACGG---TA--TAAAAAAA-A---------A-------AATTC----------T--------T---TT-T--T-------TTTTG-T-ACAAGA-ATTCCGATTTT---A-A-TGTTAATGTGA--TC-GATCTGAATCGATTAGCAAAGCG---T-------ATTTAACGCAAAAAGT----GTTA-TTGAT-TCAAACATTTTTAAAGATTGAGATGTATGAATCCAGCAT--GCTGCTAGTCGGATGGCAGA--GA-G-TCTAT-----TG-A-CGGAAATTTACTCAACTGAT-A-----ATC---A-CTG-A---GAAACAATATTTTCAC-ATAGGTTT-AAAGATTTTTAA-ATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAA-GGTG-AAAGGT-ATG-TGGGTT------TTGT---------------------TCA---GTAT-GTGAAAATGAAC-T-TCGCA---T--GC---C-----A----C-G------GGGAA---GGAATGAT-TGCCGTT-GACATGCAG-AATCGACATCTCTGACT-CTCATCAT-GAATA-T---AAAATTTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATC-CTGTACAAGCTCT--AGACTC-GGA--TTGACCGACGAATGC--AAGGCATAGTGA--CCGACTAATGC----AATGCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCC---C---T---GG-CCAGT-CT---------T-A-G---ATAGCGAT---G-TCAG-A-----TCA----G-ACC---------GA-G---------TTT-------TA-GA---TTCAGA---------G-GTC-TACT---G-TAG----------------G----AC------------C-----------ATTAACATGC-----TGTTAGTGTGAAATCACT-GAATCGTTGAAAGG--A--CATATTACAAAA--------------------AAAT--------AGTA--------TA-A--TT--CTC--AGATGTTCATGCATTAATTGTGTG-AAACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--T-T--T-C-AGT-CTG-----------C------T-A-----GTC----TAAG------A-----TAATAA---------G-TTA--T--------C-TT-------CAAT-GT--ATTATTTCAAGATTTCCT-T--GGACCAAGAAA-ATGACTTTGATCA-TCAATCTTAGATCATTGGACATACATGTATTACAAAAAAATAGAATATTCTC--AG-A-TT-CATTGAAAATG----TGTAA
gi|4 : TAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---TA--AAAAAAAA-ATCCGGAAAAA-------GATCC----------T--------C---TT-T--T-------TTTTGGT-ACAC---ATTCCGATTTT---A-AATGTTA-TGTGA--CCCGATCTGAATC----AGCAAAGCG---CTTG----ATTTAAC-CAAAA-GT----GTTA-TTG-T-TCAAACAATTT-AAAGATTGAGA-GTATGAA--------------CTAGTTG-ATGGCAGA--GATG-TCT-T-----TG-AATGGAAATTTACTT-ACTGATGA-----ATC---AGCTGAA---GAAAC--TATTTTCAC-ATAGGTTT-AAAGATTCTTAT-ATAGAAA--TAT--GGCCGTTTCTGACTAATC----CAAA-AGTGTGAAGGT-ATG-T---TTG-----TTGT---------------------TTACATTTAT-GTGAAA---GAC-T-TCGCATATT--GCG--C-----A----C-G------GGGAA---GGAATGAT-TACCGTCGGACATGCAGCAATCAAGTTCTCTGACTGCTCATCGT-GAATATT---AAAATTTAAAAATCTTACGCAATATGAACATTTTCAAATCATTATTGTACAAGCTCTA-AGACTCTGGA--T--ACCGACTAA-------------------------AATGC----CATGCTATGCA--ATGTCAGC-T-A-TTG--------CG-AA-ATGC-AT-TTGT-CC---C---T---GG-CCAGT-C----------T-A-G---A-AACGAT---G-TCAG-A-----TCA----GAACT---------GA-GGT-------TTC-------TA-GA---TTCAGA---------G-
gi|11 : gaatcgtcacagagttcataaattcatcagtcaatttcctcagagtttaatgcaaacctgtttactcttccgttttcaccgtatttcttacggTAGAAAGGCAAAAAATACGTTTTATGGTTGTCGGTG-GT--AA-AATTACGG---TAGATAAAAAAA-A---------ACGGAAAAAATTTGGG-------T--------T---TT-T--TGTACAAATTTNG-T-ACAA---ATTCCGATTTT---A-AATGTTA-TGTGAC-TC-GATCTGAATC----AGCAAAGCA---CTTG----GTTTAA-ACAAAA-GT----GTTA-TTGAT-TCAAGCATTTT--AAAATTGGGA-GTTTGAATCCAGCAT--GCTGCTAGTCG
gi|1 : atacagacctgtttactcgtccgttttcaccgtatttcttacggAGAAAGCCAAAATGTACGTTTTACGGTCGTCG-GTAGT--AA-TATTACGAGGTTA--TAAAAAAACA---------A-------AATCC----------TGAAGAAATTCGGTT-TGAT-------TTTTG-TTACAACACATTCCGATTTTTAAATA-TGTTG-TGTGG--CCCGATCTGAAT---TCAGCAAAGCG---CTTG----ATTTAACCCAAAA-GTCTCTGTTAATTGATCTCACGCATTT--AACGATCGAGA-GTATGACCTTA-CATCAGCTATTAGTCG-ATGACAAG--GA-A-TCATT-----TA-A-CGGAAATT-ACTTTACTGCTGA-----AGA---G-CTG-A---AAAACATT-TTTGCAC-TTAGGTTT-AAAGATTCTTAATATAGAGAATTATG-GGCCG-TTTTGACTAATTGGGTCCAA-AG-A-AAAGGTCATG-TCG----------TAG---------------------TC----GTAT-GTG-AAATGAAC-TGTTACA---T--GT---A-----A----G-GCATTTTGCGCATTGGGAATGTT-AGCTG-C-GACATGCAA-AATTTACA-----AAGT-CTCACCATAGAATT-TAGGAAAA--TAAAGATC--AC-CCATA-GAAC-TTTCA-AATCATT-TTGTACAAACTCTA-AGGCTC-GGA--TTGACCGATAAAAGCTGAAGGC-----------------------------TATGCA--ATGTCA-C-TGACTTG--------CGCAACATGACATCTTGTACC---C---A---GGCCCAGT-GT---------TCA-GTCTATTAAGAT--------G-A-----TCA----A-ACCTTTCGATAGGA-T---------TTC-------TA-TACCTTCCATA---------GTGTC-TACTG--G-TAGTGAAGA----------A----AC------------TAAAAAGTTTGAATTAACAAGC-----C-TTAATTTGAAATCACT-GGATCG--GAAA-G--A--CATATTAC-CAA--------------------AAAT--------AGTAAAGTATTCTA-AATTT--CTC--AGAT-TTCATTGACAAATTGTGTG-TAACATCG------TC-CAA--CATTATT-------CA-CCATTCA-T-T--T-C-A-T-CTGTT---------C------T-A-----GGC----TAAA------C-----TGATAAT--------GTTTAACT--------CTTT-------CAATCATTGATTATTTCAAAATT--CT-TAGGGACTATCAAATATGACT
gi|9 : agacctgtattaactcttccgtttcattcgtattgtttttaccaggttcAGAGG--AAAAA-TC-GTTTTCGATCGTCT-TG-GTTTAACAATTACGA----G--TAAAAAAA-A---------A-------AATCCGCAGAAAAGAT--------T---CCGT--T-------TTTTG-C--CAA---ATTCCGATTTT---A-AATGTTA-TGTGA--CCCGATCTGAATC----AGCCAAGCG---CTTG----ATTTAAC-CAAAA-GT----GTTA-TTGAT-TCAAACA-TTTTAAAGATTGAGA-GTATGAATGCAGCAT--GCTGCCAGTC-GATGGCAGA--GATG-TCT-T-----TGAA-CGGAAAggacttgctttaaaggggaacttagcacaaaaaaatcagtt
gi|8 : agacctgtttactcttccgtttctccatgtattgtctttatggt--AA-AAATGCGG---TT--TACGGAAA-A---------A-------G--TT----------T--------T---GC-T--A-------TTTTG-T-AGAA---ATTCTTATTTT---A-AATGTTA-TGTGGGCCC-GATCTGA-----TCAGCAAAGCG---CTTTTAAAATTTAA--CAAAAGGT----GTTA-TTGAT-TCAAGCA-CTTTAAAAATTGAGA-GCATGAA---ACCAT--GCC--------GATGGCATA--GA-------------TGAA-CGGAAATTTAATATATTGAT-
gi|18 : tcctcacatttcatatagaagtttatgatacatattttgccataaagattcagacctgtttactcttccccaccgtatttctaaaaaaaaaA-ATTCTGATTTT---A-AATGTTA-TGTGG--CCTGATCTGA-T---TTGGCAAAGCTCTTT-------ATTTAAC-CAAAA-GT----GTTA-TTGAT-TCAAATGTTTTgtgattagcctaatcagctga
gi|13 : acaCAGCAG--GCTGC--GT--AATG-CAAATTAA-A-TCTAT----------CGAAGATTTA-TCA-CTGAT-ATAATGATCCATG-CTG-AAGAGAAACAATATTTTCAC--TAGGTTTAAAAGATTCTTAT-AT-GAAA--TACTGGGCCG-TTTTGACAAAT---GTT------TC-AAAGGT-ATGTTAGGTTACAAAATTGTTTCAAGAGTATGTTCGTTATATCA---GTATCGTG-AAATGAACAT-TCATATT-T--GT---CGCAGGG----C-G------GAGAG---GAAATGATATG-CGTC-GAC
gi|3 : GTCG-ATGGCAGA--AATG-TCT-T-----TG-AGCGGAAATTTACT-----GATGA-----ATC---AGCTG-AA--GAAACAATCTTTTCAC-TTAGGTTT-AAA---------------AA--TAT--GGCCGTTTATGACCAATC--GTCCAAAGGCG-AAAGGT-ATG-TTCGTT--------GT---------------------TCA---GTAT-GTGAAA-TGAAC-T-TCGCA---TTTGCATAC-----GGGGCC-G------GGGAA---GGAATGAT-TGCCGTC-GACGTACAG-AATCAAAGTCT----------AT----------T---AAAAATTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAACTTTTAAGACTC-GGACNNNNNNNNNNNNNNNN--NNNNNNNNNTGATGCCGGATAAAGCTGGTAA-GCTATGCAATATGTCAGCATGA-TTG--------CG-AACATGA-AT-TTGTCCT---C---CCGGGG-CCAGTGCT---------T-CTGTCTATA-C-ATTTGA-TCAGAA-----CCATTTCG-ACT---------GA-GGTA------TTC-------TAGGA---TTCAGGC--------GTGTCTTACTAGGG-TAGTGAAGAGCTAAAAGTTG----AC------------C-----------CATAACATGCGTGGTTGATTGTGTGAAATCACTGGAATCA--------------ATATTAC--AA--------------------AAAT--------AGTC--------T--A--TT--CTC--AGAT-TTCATTAA--AATAGTGTATAAACCTAGCTAGGATCTCAAGGCAT--AT-------TACCCTGTC--T-TTCT-C-AGCGTTG-----------C------TCAATAACGTC----TAGGTCTGGTAATAACTAATAA---------G-TTA--TAGTTTACCT-TT-------CAAT-GT--ATTA-TACAAGATTT-CT-G--GGACCAAGAAA-TTGAC-TGGATCA-T-----TCAAA-----AGACAT--ATTTAATAC--AAAAATAGA--ATTCTC--AGTT-TT-CATTGAAAATGGGCTTGTAAggatggcaaccga
gi|23 : GGCAGA--GATG-TCT-T-----TG-AACGGAAATTTACTCAACcgtactgtagttccaactcgcattt
gi|5 : GCAGA--GA-TCTCTATGTGTTTG-AACGGAAATTTACTTA-CTGATGA-----ATC---AGCTG-AA--GAAACAATCTTTTCACTAAAGGTTT-AAAGATTCTTAT-ATAGAAA--TAT--GTCCGTTTTTGACCAATC--GTTCAAAGGTG-AAAGGT-ATG-T---TTA-----TTGT---------------------TCA---GTAT-GTGAAA-TGAAC-T-TCGCA---TTTGCG--C-----A----CAG------GGGAA---GGAATGAT-TGCCGTC-AACATGCAG-AATCAAAGTCTTAG------TATCAT-GAATA-T---------TAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAATGCT--AGACTC-AGA--TTGTCCGACTAAAGC-----------TGA-----A--------------GCTATGCA--ATGTCAAC-TGA-TTGCAAACAGCCG-AACATGA-AT-TTGTCCCGGGCCAGT---GT-TCAGT-CTATACATATGT-A-G---ATA-CGAT---GATCAG-AACCTTTC-----G-AAT---------GAGG---------TTTCTGCGTGTA-GA---TTCAGAATGTTTACTG-GTC-TAGT---G-AAG----------------A----GCTCAAAATATTGAC-----------ATTAACATGC-------TTGATGTGAAATCACT-GGATCGTTGAAAGG--G--GACATTAC-AAA--------------------TAAT--------AGTA--------T--A--TT--CTC--AGAT-TTCATTGA--AAATATATC-TAATCTAG------TC-CAA--CAT--TT-------TA-CTTGTC--T-T--T-TAAGT-CTGTCTAGT-----C------T-A-----GTC----TAAA------C-----TAACAA---------
gi|6 : aatccagcatACTAAAGCTG--AA-GCTATGCA--ATTTCAGC-TGA-TTT--------TG-AACAAGA-AT-TTGTCCT---T-------------GT-CT-----------------ATA-CGAT---GATCAA-AACCTTTC-----G-AAT---------GA-GGTTTCCATATTC-------TA-AA---TTCAGA---------GTGTC-TAAT---GGTAG----------------GGAAGAG------------C------------TCAAAA-GT-----TGTTA-T-TAACATCACT-GGATCATTGAAAGG--AGACATTTTGCAAAAAGCAAAAAAAAAAAAAAAAAAAATTGGACAAAAGTA--------TATA--TT--CTCTCAGAT-TTCATTGA--AAATGTGTG-TAACCTTG------TC-CAT--TAA--TT-------TC-CTTGTC--TTT--T-C-AGT-CTG-----------TCTAGTGT-A-----GTC----TAAA------C-----TGATAG---------G-TTA--C--------T-TTTGATGTACAGT-GT--ATTATTCCAAAATTTCaggggacatacatgtattacaaaa
gi|7 : AGA---------GTGTC-TACT---GGTAGT---------------G----AC------------------------ATTAACATGC-----T--TGATGTGAAATCACT-GAATCGTTGAAAGGGGA--CATATTACAAAA--------------------AA-T--------AGTA--------TA----TT--CTC--AGAT-TTCATTGA--AATTGTGTG-TAACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--T-T--TTC-AGT-CTGT----------C------T-A-----GTC----TAAG------A-----TAATAA---------GGTTA--C--------T-TT-------CAAT-GT--ATTATTTCAAGATTTCTTGG--GGACCAAG-AA-ATGAC-TTGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTC--AG-ATTT-CATTGAAAATG----TGTAAatgggggatcttcccgacttgagtatgtggcactctctggtgattgtactgacaaactcgaaaaattctgcaaatcttactgacaggcttcattgaaagtaaacgggtcatatggtatgata
gi|10 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgTATTACAAAA--------------------AAAT--------AGAA--------TA----TT--CTC--AGAT--TCATTGA--AAATGTGTA-AAACCTAGG-----TA-CAA--CAT--TT-------TA-CCTGTCATT-C--T-C-AGT--TGT----------C------T-A-----GTCAATCTAA-------A-----TAATAA---------GGTTA--C--------T-TT-------CA-T-GT--ATTATTTTAAAATTTCCT-G--GGcctagtccaacattttacctgtcatttcagtctgtctagtcaagtctaaactaataaggttactttcaatgtattattttaaaattccttggggacaccc
gi|16 : gacatacatgTATTACAAAA--------------------AA-T--------ATTA--------TA----TT--CTC--AGAT-TTCATTGA--AAATGTGT---AATCTAG------TC-AAA--CAT--TTTACCTCATA-CCTGTCT-T-T--T-C-AGT-CTG-----------TA-----T-A-----GTC----TAgacacccccctccctccgataaaatatttgtggtattagtgagccactcgctggttattgtactgacaaactctaaaattcaagaaaatcttactggcagcttcgttaggtaaacag
gi|15 : gacatacatgAT--------AGTA--------TGTA--TTTTCTC--AGAT-TTCATTGAC-AAT-GTGTG-TAACTTA---------------CAT--TT-------TC-CCTGCCT-T-T--T-C-AGT-Cttatttaaaaatttcttgtggaacac
gi|19 : taatatattgatgtgattagcctaatcagctgaccaaaggggacatattgcgcaaaaaataattaatagtagcgtatgtgAA--CAT--TT-------TA-CCTGTCT-T-T--T-C-AGT-CTGTCTCAATAAGTC------T-A-----GTC----TAAA------C-----TAATAAGCTTATAAGG-TTA--C--------CTTT-------CAAT-GT--ATTATatcatctcaacaatctagtctaa
gi|20 : -CCTGTC--T-T--TTC-AGT-CTGT----------C------T-A-----GTC----TAGA------T-----TGACAAA--------G-TTA--C--------T-AT-------CAAT-GT--ATTATTTCAAAATGTC
gi|14 : c-----------C------T-A-----GTC----TAAA------C-----TGATAAA--------G-TAA--C--------T-TT-------CATT-GT--ATTATTTCAGAATTTatggggga
gi|5 : catttgcatttgtGGACATACATGTATTACAAAAatcgggggattacgcccctccacccccccccctgacttaaatcataaataagtgccataatgtggcacttactggtgattgtactcaatgtattgataaaactcatataattcagataatcttactgtcaggcttgattgagggttaacagggctgcaaatcccccccccccacacttttgaaagtgaggg
gi|10 : aatccagcatgcagagatctctatgtgtttgaacggaaatttacttactgatgaatcagctgaagaaacaatcttttcactaaaggtttaaagattcttatatagaaatatgtccgtttttgaccaatcgttcaaaggtgaaaggtatgtttattgttcagtatgtgaaatgaacttcgcatttgcgcacaggggaaggaatgattgccgtcaacatgcagaatcaaagtcttagtatcatgaatattaaaaatctaccaatagaacttttcaatcattttgtacaaatgctagactcagattgtccgactaaagctgaagctatgcaatgtcaactgattgcaaacagccgaacatgaatttgtcccgggccagtgttcagtctatacatatgtagatacgatgatcagaacctttcgaatgaggtttctgcgtgtagattcagaatgtttactggtctagtgaagagctcaaaatattgacattaacatgcttgatgtgaaatcactggatcgttgaaaggggacattacaaataatagtatattctcagatttcattgaaaatatatctaatctagtccaacattttacttgtcttttaagtctgtctagtctagtctaaactaacaaaggGACATACATGTATTACAAAAAAATAGAATATTCTC--AG-A-TT-CATTGAAAATG----TGTAA
gi|16 : GACATACATGTATTAC-AAAAAATATTATATTCTC--AG-ATTT-CATTGAAAATG----TGTAAaacctaggtacaacattttacctgtcattctcagttgtctagtcaatctaaataataaggttactttcatgtattattttaaaatttcctggggacacccccctccctccgataaaatatttgtggtattagtgagccactcgctggttattgtactgacaaactctaaaattcaagaaaatcttactggcagcttcgttaggtaaacag
gi|5 : ATTACAAATAA-TAGTATATTCTC--AG-ATTT-CATTGAAAATA----TATtctagtcaaacattttacctcatacctgtcttttcagtctgtatagtctattatttaaaaatttcttgtggaacac
gi|6 : aatccagcatgcagagatctctatgtgtttgaacggaaatttacttactgatgaatcagctgaagaaacaatcttttcactaaaggtttaaagattcttatatagaaatatgtccgtttttgaccaatcgttcaaaggtgaaaggtatgtttattgttcagtatgtgaaatgaacttcgcatttgcgcacaggggaaggaatgattgccgtcaacatgcagaatcaaagtcttagtatcatgaatattaaaaatctaccaatagaacttttcaatcattttgtacaaatgctagactcagattgtccgactaaagctgaagctatgcaatgtcaactgattgcaaacagccgaacatgaatttgtcccgggccagtgttcagtctatacatatgtagatacgatgatcagaacctttcgaatgaggtttctgcgtgtagattcagaatgtttactggtctagtgaagagctcaaaatattgacattaacatgcttgatgtgaaatcactggatcgttgaaaggggacACAAAAGTATA---TATTCTCTCAG-A-TTTCATTGAAAATG----TGTctaatctagtccaacattttacttgtcttttaagtctgtctagtctagtctaaactaacaaaggggacatacatgtattacaaaa
gi|15 : actaaagctgaagctatgcaatttcagctgattttgaacaagaatttgtccttgtctatacgatgatcaaaacctttcgaatgaggtttccatattctaaattcagagtgtctaatggtagggaagagctcaaaagttgttattaacatcactggatcattgaaaggagacattttgcaaaaagcaaaaaaaaaaaaaaaaaaaattggATTTTCTC--AG-A-TTTCATTGACAATG----TGTgtaaccttgtccattaatttccttgtcttttcagtctgtctagtgtagtctaaactgataggttacttttgatgtacagtgtattattccaaaatttcatgggggatcttcccgacttgagtatgtggcactctctggtgattgtactgacaaactcgaaaaattctgcaaatcttactgacaggcttcattgaaagtaaacgggtcatatggtatgata
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CACTCTCTGGTGATTGTACTGACAAAATCTCAAGATTCTGCAGAATCATTGAGGGGAAACAGGTCTGTTAAATGATAGGTGGTTTCAGGAGACTCAGTGGTCACATCCAAGGAAGACAGAACATCAGAGAGGGTGGCAGTGATGGTTCCTAAGATCCTTTTATCTGGAGAACTGAAGGCGACAGTGAATGGCAAACATAAAGCACTGGATGGATTGGTGGCAAAACCAACATCATTGGTCCTCTGCTTTAATCTTGAAATTAC
Unaligned ( gi|17 ): ACTGGTGAATGTAATGACAAAAGTCTAAAAATTCAGATAATCTTACAGACTGGCTTGATTGAGGGTTAACAGGTCAGCAAATACCCCCTACCACTTTTGAAATGGGGG
Unaligned ( gi|21 ): AAGTGCCATATTGTGGCACTTACAGGTGATTGTACCCAATGTATTGATAAAACTCATATAATTCAAAGAA
Unaligned ( gi|22 ): TGACTGGTCAGAGTTCATACACACTCTATCCTGAACGTTTCCTCTGAACAGCCTATGTTC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1 222222 33333333333333333 777777777777777777777777777777777777 111 33333 1111 1111 11 333333 1 111111 11 33333333333333333333 11 11 111 6666666666666666666666 333 111 2 222222222 111 222222 111 555555555555555555555555555 666666666666666666666666666666666666 1111111 22222222 1 1111 4444444444444444444444 1111 2 4444444 111 888888888888888888888888888888888888888 2222 111 1111111 22222222222222 1111 5555555555555555555555555555555555555555555555555555555555555555555 111111 1111111 11 1 22222222222222222222222222222222 3333333333333333 1111111 1 1 1111 2 2222
lowQualScore : 3 11 0 3 0 8 99 6 000000 99999999999999999 6 1 666666666666666666666666666666666666 5 777 77 5 5 5 44444 2222 5 5 5 2222 5 5 99 6 111111 99 5 5 9 999999 99 11111111111111111111 99 7 1 44 6 6 3 99 55 7 2 000 5555555555555555555555 6 777 2 6 1 111 6 3 6 6 666666666 3 111 111111 6 1 6 6 8 444 0 111111111111111111111111111 8 8 88 8 8 8 8 8 8 11 8 2 333333333333333333333333333333333333 4444444 99 1 6 6 44444444 6 6 6 0 1 9999 6 99 4444444444444444444444 99 7 1 0000 3 6 6 1 6 0000000 6 111 5 6 99 99 3 555555555555555555555555555555555555555 3 3 1111 1 000 0 6666666 5 55 00000000000000 55 2222 3333333333333333333333333333333333333333333333333333333333333333333 55 4 55 55 1 4 555555 4 55 55 1111111 3 77 44 3 3 888888 44444444444444444444444444444444 3 6666 77777 0 0 7777777777777777 1111111 3 55 22 4 3 0 0 1 7 3333 7 7 3 7 7 8888
lowQualScore : . .. . . . . .. . ...... ................. . . .................................... . ... .. . . . ..... .... . . . .... . . .. . ...... .. . . . ...... .. .................... .. . . .. . . . .. .. . . ... ...................... . ... . . . ... . . . . ......... . ... ...... . . . . . ... . ........................... . . .. . . . . . . .. . . .................................... ....... .. . . . ........ . . . . . .... . .. ...................... .. . . .... . . . . . ....... . ... . . .. .. . ....................................... . . .... . ... . ....... . .. .............. .. .... ................................................................... .. . .. .. . . ...... . .. .. ....... . .. .. . . ...... ................................ . .... ..... . . ................ ....... . .. .. . . . . . . .... . . . . . ....
lowQualScore : 2 66 8 2 0 0 22 7 000000 33333333333333333 7 7 222222222222222222222222222222222222 7 999 99 7 7 7 99999 1111 7 7 7 1111 7 7 33 7 222222 22 2 0 4 444444 99 66666666666666666666 22 3 0 22 7 7 2 22 88 3 2 222 8888888888888888888888 7 333 8 7 0 777 7 7 7 7 777777777 5 777 555555 7 0 7 7 0 000 8 888888888888888888888888888 0 0 88 0 0 0 0 0 0 66 0 8 000000000000000000000000000000000000 0000000 22 0 7 7 22222222 7 7 7 8 0 5555 7 22 8888888888888888888888 22 3 0 7777 7 7 7 0 7 8888888 7 777 7 7 22 22 2 222222222222222222222222222222222222222 5 5 7777 7 000 7 2222222 0 22 22222222222222 55 7777 3333333333333333333333333333333333333333333333333333333333333333333 55 0 55 55 0 0 555555 0 00 00 8888888 3 99 66 3 3 888888 99999999999999999999999999999999 1 5555 77777 5 2 9999999999999999 8888888 6 00 88 4 2 0 0 0 3 7777 3 3 7 3 3 3333
consensus : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATCC------------GT--------TTT--TT-------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-C-AGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTACTT-ACTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGT--TCGTTGT-TCA---GTAT-GTG-AAATGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCTGA-T--CTCATCAT-GAATA-TA--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA-------------GC--------CG-ATAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCCN---GG-CCAGT-CTT-A-GTCTATA-----------ACGA--TGATCAGAACC-TTTC-G-ACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGA----------G------AC-----C-----------ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTG--A--AAATGTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AACTAATAA--G-TTA---------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
Reference ( family-2017 ) : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATCC------------GT--------TTT--TT-------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAATC--TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-C-AGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTACTTAACTGATG----------AAT----CG-GCTGAAGA--AACAATNTTTTCAC-NTAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACCAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTGGTTATTGT-TCA---GTAT-GTGAAAATGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTC-GA-T--CTCATCGT-GAATA-TA--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAAAGCAAG------------GC--------TGAATAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCCC---GG-CCAGT-CTT-A-GTCTATA-----------ACGA--TGATCAGAACC-TTTCAG-ACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGA----------G------AC-----C-----------ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTG--A--AANTGTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AACTGATAA--G-TTA---------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTCAAATCATTGGACATACATGTATTACAAAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
gi|1 : AGAAAGCCAAAATGTACGTTTTACGGTCGTCGGTA-GT--AA-TATTACGAGGTT--ATAAAA---------A-------AACAAAATCCTGAAGAAATTCGGT--------TTG--AT-------TTTTGTTACAACACATTCCGATTTTTAAATATGTTG-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAACC-CAAAA-GTCTCTGTTAATTGATCTCACGCA--TTTAACGATCGAGA-GTATGACC-T-TACATCAGCTATTAGTC-GATGACAAGGA-ATCA------TTTAACGGAAA-TTACTTTACTGCTG----------AA------GAGCTGAA-A--AAC-ATTTTTGCAC-TTAGGTTTAAA-GATTCTTAATATAGAGAATTATG-GGCCG-TTTTGACTAATTGGGTCCAAAG--A----------------------AAAGGTCATGTCG-TA--GT-C-----GTAT-GTG-AAATGAAC-TGTTACATGTAAGGCATTT---TGCGC---A--T-TG----GGAATGTT-AGCTG-C-GACATGCAA-AATTTACAAAG--------T--CTCACCATAGAATT-TAGGAAA-AT-AAAGATC--AC-CCATA-GAAC-TTTCA-AATCATT-TTGTACAAAC-TCTAAGGCTC-GGATTGACCGA-TA----------------------------------AAAGCTG--AAGGCTATGCA--ATGTCA-C-TGACTTG--------CGCAACATGACATCTTGTACCCA---GGCCCAGT-GTTCA-GTCTATT-----------AAGA--TGATCA-AACC-TTTC-G-A-TAGGAT-TTC-------TA-TACCTTCCATA-GTGTC-TACT--GG--TAGTGAAGA----------A------AC-----TAAAAAGTTTGAATTAACAAGC-C--TTAA---TTTGA-------AATCA-CTGG-ATCG--GAAA-G--A--CAT--ATTAC----CA--------------------AA-----AAT--------AGTAAAGTATTC--TA-AATT--------TCTC--AGAT-TTCATTGACA--AATTGTGTGT-AACATCG------TC-CAA--CATTATT-------CA-CCATTCA-TT--T-C-A-------TC------T-----GTTC-----T----------A-GGC----TA-----AACTGATAAT-GTTTAACT------CTTT-------CAATCATTGATTATTTCAAAATTCTTA-GGGACTATCAAATATGAC-TGGA
gi|10 : agacctgtattaactcttccgtttcattcgtattgtttttaccaggttcT--ATTAC---AAA--------------------AA-----AAT--------AGAA----------TA----T--------TCTC--AGAT-T-CATTG--A--AAATGTGTAA-AACCTAGG-----TA-CAA--CAT--TT-------TA-CCTGTCATTC--T-C-AG------T-------T-----G-TC-----T----------A-GTCAATCTA-----AA-TAATAA--GGTTA---------CTTT-------CA-T-GT--ATTATTTTAAAATTTCCT-GGGcttgctttaaaggggaacttagcacaaaaaaatcagtt
gi|11 : gacatacatgTAGAAAGGCAAAAAATACGTTTTATGGTTGTCGGTG-GT--AA-AATTACGG---TAGATAAAA---------AAAAACGGAA-AAAATTTGG----------GT--------TTT--TTGTACAAATTTNGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGA-CTCGATCTGAA----TCAGCAAAGCACTT----GGTTTAA-A-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTT--AAAATTGGGA-GTTTGAATCC-AGCAT--GCTGCTAGTCGgacacccccctccctccgataaaatatttgtggtattagtgagccactcgctggttattgtactgacaaactctaaaattcaagaaaatcttactggcagcttcgttaggtaaacag
gi|13 : atacagacctgtttactcgtccgttttcaccgtatttcttacggCGAAGATTTA--TCACTGATAT---------AATGATCCATGCTGAAGAGAAACAATATTTTCAC--TAGGTTTAAAAGATTCTT-ATAT-GAAA--TACTGGGCCG-TTTTGACAAATG--TTTCAAAGGTATGTTAGGTTACAAAATTGTTTCAAGAGT-ATGT--TCGTTATATCA---GTATCGTG-AAATGAACAT-TC---------ATATTT---GTCGCAGGG--C-GGAGAGGAAATGATATG-CGTC-GAC
gi|14 : cagcaggctgcgtaatgcaaattaaatctat------TT------T-----G-TC-----T----------A-GTC----TA-----AACTGATAAA-G-TAA---------CTTT-------CATT-GT--ATTATTTCAGAATTTATC-GGGggatggcaaccga
gi|15 : catttgca-T-ATTGA---TGTGATTAGCCTAATCAGCTG--ACC----AAAGGGGA--CAT--ATTGCGCAAAA--------------------AATAATTAAT--------AGTAGCGTATGTGATA-G--TATGTATTTTCTC--AGAT-TTCATTG--A--CAATGTGTGT-AACTTA---------------CAT--TT-------TC-CCTGCC--TT--TTC-AG------TCATCATCTCAACAA-TC-----T----------A-GTC----TA-----Aggattacgcccctccacccccccccctgacttaaatcataaataagtgccataatgtggcacttactggtgattgtactcaatgtattgataaaactcatataattcagataatcttactgtcaggcttgattgagggttaacagggctgcaaatcccccccccccacacttttgaaagtgaggg
gi|16 : taataT--ATTAC---AAA--------------------AA-----A-T--------ATTA----------TA----T--------TCTC--AGAT-TTCATTG--A--AAA--TGTGT-AATCTAG------TC-AAA--CAT--TTTACCTCATA-CCTGTCT-TT--T-C-AG------TC------T-----G-TA-----T----------A-GTC----TA-----
gi|18 : gacatacatg-ACAA---ATTCTGATTTT--AA-ATGTTA-TGTGG-CCTGATCTGA--T--TTGGCAAAGCTCTT----TATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAATGTTTTttatttaaaaatttcttgtggaacac
gi|19 : AA--CAT--TT-------TA-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----TCAATAAGTCTA-GTC----TA-----AACTAATAA--GCTTATAAGGTTACCTTT-------CAAT-GT--ATTAT
gi|2 : TAGAAAGGTAAAAAA-AC-TTGTACG-TCGTCG-TGCGT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATTC-------------T--------TTT--TT-------TTTTGT-ACAAGA-ATTCCGATTTT--AA--TGTTAATGTGA-TC-GATCTGAATCGATTAGCAAAGCGT-------ATTTAA-CGCAAAAAG----TGTT-ATTGAT-TCAAACATTTTTAAAGATTGAGATGTATGAAT-CCAGCAT--GCTGCTAGTCGGATGGCAGAGA-GTCTA-----TTGA-CGGAAATTTACTCAACTGAT-----------AAT----CA--CTGA-GA--AACAATATTTTCAC-ATAGGTTTAAA-GATTTTT-AAATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAA-GGTG----------------------AAAGGT-ATGTGGGTTTTGT-TCA---GTAT-GTGAAAATGAAC-T-TC---------GCAT------GC-C---A--C-GGGGAAGGAATGAT-TGCCGTT-GACATGCAG-AAT---CGACATCTCTGACT--CTCATCAT-GAATA-TA--AAA-TTTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATC-CTGTACAAGC-TCTA-GACTC-GGATTGACCGACGAATGCAAG------------GCATAGTGACCGACTAATGC----AATGCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCCT---GG-CCAGT-CTT-A-G---ATA-----------GCGA--TG-TCAGA------TCAG-ACCGAG---TTT-------TA-GA---TTCAGA-G-GTC-TACT--G---TAG----------------G------AC-----C-----------ATTAACATGC-T-GTTAG---TGTGA-------AATCA-CTGA-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGATGTTCATGC--ATTAATTGTGTGA-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G--C-----T----------A-GTC----TA-----AGATAATAA--G-TTA---------TCTT-------CAAT-GT--ATTATTTCAAGATTTCCT-TGGACCAAGAAA-ATGACTTTGATCA-TCAATCTTAGATCATTGGACATACATGTATTACAAAAAAATAGAATATTCTCAGA-TTCATTGAAAATG----TGTAA
gi|20 : c-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----T----------A-GTC----TA-----GATTGACAAA-G-TTA---------CTAT-------CAAT-GT--ATTATTTCAAAATGTCAT-GGG
gi|23 : cGGCAGAGATGTCT------TTGAACGGAAATTTACTCAACgga
gi|3 : GTCG-ATGGCAGAAATGTCT------TTGAGCGGAAATTTACT-----GATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCAC-TTAGGTTTAAA----------------AA--TAT--GGCCGTTTATGACCAATC--GTCCAAAGGCG----------------------AAAGGT-ATGT--TCGTTGT-TCA---GTAT-GTG-AAATGAAC-T-TC---------GCATTTGCATACGG---GGCC-GGGGAAGGAATGAT-TGCCGTC-GACGTACAG-AAT---CAAAGTCT---A-T--------------TA--A--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAACTTTTAAGACTC-GGACNNNNNNNNNNNNNNNNNNNNNNNNNTGATGC--------CGGATAAAGCTGGTAA-GCTATGCAATATGTCAGCATGA-TTG--------CG-AACATGA-AT-TTGTCCTCCCGGGG-CCAGTGCTT-CTGTCTAT------------AC-ATTTGATCAGAACCATTTC-G-ACTGAGGTATTC-------TAGGA---TTCAGGCGTGTCTTACTAGGG--TAGTGAAGAGCTAAAAGTTG------AC-----C-----------CATAACATGCGTGGTTGATTGTGTGA-------AATCA-CTGGAATCA--------------AT--ATTAC-----A--------------------AA-----AAT--------AGTC----------T--A--T--------TCTC--AGAT-TTCATTA--A--AATAGTGTATAAACCTAGCTAGGATCTCAAGGCAT--AT-------TACCCTGTC--TTTCT-C-AGCGTTGCTCAATAA-C-----G-TC-----T----------AGGTC----TGGTAATAACTAATAA--G-TTATAGTTTAC-CTTT-------CAAT-GT--ATTA-TACAAGATTT-CT-GGGACCAAGAAA-TTGAC-TGGATCATTCAA----AA-------GACAT--ATTTAATAC--AAAAATAGA--ATTCTCAGTTTTCATTGAAAATGGGCTTGTAA
gi|4 : TAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--AAAAAAAAAATCCGGA-------AA-AAGATCC------------TC--------TTT--TT-------TTTGGT-ACAC---ATTCCGATTTT--AA-ATGTTA-TGTGA-CCCGATCTGAA----TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTG-T-TCAAACA-ATTTAAAGATTGAGA-GTATGAA---------------CTAGTT-GATGGCAGAGATGTCT------TTGAATGGAAATTTACTT-ACTGATG----------AAT----CA-GCTGAAGA--AAC--TATTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTCTGACTAA-----TCCAAAAGTGT---------------------GAAGGT-ATGT--TTGTTGT-TTACATTTAT-GTGAAA---GAC-T-TC---------GCATAT---TGCGC---A--C-GGGGAAGGAATGAT-TACCGTCGGACATGCAGCAAT---CAAGTTCTCTGA-CTGCTCATCGT-GAATATTA--AAATTT-AAAAATCTTACGCAATATGAACATTTTCAAATCATTATTGTACAAGC-TCTAAGACTCTGGAT--ACCGACTAA---AAT------------GC--------C--AT------------GCTATGCA--ATGTCAGC-T-A-TTG--------CG-AA-ATGC-AT-TTGT-CCCT---GG-CCAGT-C-T-A-G---A-A-----------ACGA--TG-TCAGA------TCAGAACTGAGGT-TTC-------TA-GA---TTCAGA-Gcgtactgtagttccaactcgcattt
gi|5 : gaatcgtcacagagttcataaattcatcagtcaatttcctcagagtttaatgcaaacctgtttactcttccgttttcaccgtatttcttacggGCAGAGATCTCTATGTGTTTGAACGGAAATTTACTT-ACTGATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCACTAAAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GTCCGTTTTTGACCAATC--GTTCAAAGGTG----------------------AAAGGT-ATGT--TTATTGT-TCA---GTAT-GTG-AAATGAAC-T-TC---------GCA-TT---TGCGC---A--CAGGGGAAGGAATGAT-TGCCGTC-AACATGCAG-AAT---CAAAGTCTT-AG-T-----ATCAT-GAAT--------A-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAT-GCT-AGACTC-AGATTGTCCGAC-----------------------------------TAAAGCTG--AA-GCTATGCA--ATGTCAAC-TGA-TTGCAAACAGCCG-AACATGA-AT-TTGT-CCCG---GG-CCAGT-GTTCA-GTCTATACATATGTAGATACGA--TGATCAGAACC-TTTC-G-AATGAGGT-TTCTGCGTG-TA-GA---TTCAGA-ATGTT-TACT--GGTCTAGTGAAGA----------GCTCAAAATATTGAC-----------ATTAACATGC----TTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--G--GAC--ATTAC----AA--------------------AT-----AAT--------AGTA----------T--A--T--------TCTC--AGAT-TTCATTG--A--AAATATATCT-AATCTAG------TC-CAA--CAT--TT-------TA-CTTGTC--TT--T-TAAG------TC------TGTCTAG-TC-----T----------A-GTC----TA-----AACTAACAAAGG-GGA---------CATA-------C-AT-GT--ATTA---CAAAA
gi|6 : aatccagcatTAAAGCTG--AA-GCTATGCA--ATTTCAGC-TGA-TTT--------TG-AACAAGA-AT-TTGTCC----------------TT---GTCTATA------------CGA--TGATCAAAACC-TTTC-G-AATGAGGT-TTCCATATTCTA-AA---TTCAGA-GTGTC-TAAT--GG--TAGGGAAGA----------G------CT-----C-----------A--AA-A-GT-T-GTT-A---T-TAA-------CATCA-CTGG-ATCATTGAAAGG--AGACAT--TTTGC---AAAAAGCAAAAAAAAAAAAAAAAAA-----AATTGGACAAAAGTA----------TATA--T--------TCTCTCAGAT-TTCATTG--A--AAATGTGTGT-AACCTTG------TC-CAT--TAA--TT-------TC-CTTGTCT-TT--T-C-AG------TC------T-----G-TCTAGTGT----------A-GTC----TA-----AACTGATAG--G-TTA---------CTTTTGATGTACAGT-GT--ATTATTCCAAAATTTCAT-GGG
gi|7 : acAGA-GTGTC-TACT--GG--TAGTGA---------------------------C-----------ATTAACATGC-T---TGA---TGTGA-------AATCA-CTGA-ATCGTTGAAAGGGGA--CAT--ATTAC---AAA--------------------AA-----A-T--------AGTA----------TA----T--------TCTC--AGAT-TTCATTG--A--AATTGTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AGATAATAA--GGTTA---------CTTT-------CAAT-GT--ATTATTTCAAGATTTCTTGGGGACCAAG-AA-ATGAC-TTGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAAggatcttcccgacttgagtatgtggcactctctggtgattgtactgacaaactcgaaaaattctgcaaatcttactgacaggcttcattgaaagtaaacgggtcatatggtatgata
gi|7 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgA-------AATCA-TTGG-A-CAT---------A--CATGTATTAC---AAA--------------------AA-----A-T--------AGAA----------TA----T--------TCTC--AGAT-TTCATTG--A--AAATGTG--T-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTCA-TT--T-C-AG------TC------T-----G-TC-----TAGTCA-----A-GTC----TA-----AACTAATAAG-G-TTA---------CTTT-------CAAT-GT--ATTATTTTAAAATTCCTT-GGGcctagtccaacattttacctgtcatttcagtctgtctagtcaagtctaaactaataaggttactttcaatgtattattttaaaattccttggggacaccc
gi|8 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgagagtgtctactggtagtgacattaacatgcttgatgtgaaatcactgaatcgttgaaaggggacatattacaaaaaatagtatattctcagatttcattgaaattgtgtgtaacctagtccaacattttacctgtcttttcagtctgtctagtctaagataataaggttactttcaatgtattatttcaagatttcttggggaccaagaaatgacttgatcattcaatctt--AA-AAATGCGG---T--TTACGG---------A-------AA-AA-----------------GT--------TTTGCTA-------TTTTGT-AGAA---ATTCTTATTTT--AA-ATGTTA-TGTGGGCCCGATCTGA-----TCAGCAAAGCGCTTTTAAAATTTAA-C-AAAAG-G----TGTT-ATTGAT-TCAAGCA-CTTTAAAAATTGAGA-GCATGAA----ACCAT--GCC--------GATGGCATAGA------------TGAACGGAAATTTAATATATTGATGTGATTAGCCTAAT----CA-GCTGAgacaccc
gi|9 : tcctcacatttcatatagaagtttatgatacatattttgccataaagattcagacctgtttactcttccccaccgtatttctaaaaaaaaaAGAGG--AAAAAT-CGTTTT-CGATCGTCT-TG-GTTTAACAATTACGA------GTAAAA---------A-------AA-AAAATCC------------GCAGAAAAGATTCCGTT-------TTTTGC--CAA---ATTCCGATTTT--AA-ATGTTA-TGTGA-CCCGATCTGAATC----AGCCAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAACA-TTTTAAAGATTGAGA-GTATGAATGC-AGCAT--GCTGCCAGTC-GATGGCAGAGATGTCT------TTGAACGGAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACTCTCTGGTGATTGTACTGACAAAATCTCAAGATTCTGCAGAATCATTGAGGGGAAACAGGTCTGTTAAATGATAGGTGGTTTCAGGAGACTCAGTGGTCACATCCAAGGAAGACAGAACATCAGAGAGGGTGGCAGTGATGGTTCCTAAGATCCTTTTATCTGGAGAACTGAAGGCGACAGTGAATGGCAAACATAAAGCACTGGATGGATTGGTGGCAAAACCAACATCATTGGTCCTCTGCTTTAATCTTGAAATTAC
Unaligned ( gi|17 ): ACTGGTGAATGTAATGACAAAAGTCTAAAAATTCAGATAATCTTACAGACTGGCTTGATTGAGGGTTAACAGGTCAGCAAATACCCCCTACCACTTTTGAAATGGGGG
Unaligned ( gi|21 ): AAGTGCCATATTGTGGCACTTACAGGTGATTGTACCCAATGTATTGATAAAACTCATATAATTCAAAGAA
Unaligned ( gi|22 ): TGACTGGTCAGAGTTCATACACACTCTATCCTGAACGTTTCCTCTGAACAGCCTATGTTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222 88888888888888888888888888888888888888888888888888888888888888 111 222222 1111 1111 1 333333 11 111111 3333333333 1111 11 11 111 6666666666666666666666 111 222222222 111 222222 111 4444444444 222222 333333333333333333333333333333333333333333333333333 22222222 1 1111 4444444444444444444444 1111 11 4444444 111 888888888888888888888888888888888888888 2222 111 1111111 22222222222222 1111 5555555555555555555555555555555555555555555555555555555555555555555 111111 1111111 11 1 22222222222222222222222222222222 3333333333333333 1111111 1 1 22 2222
lowQualScore : 3 11 0 3 0 8 99 6 000000 33333333333333333333333333333333333333333333333333333333333333 5 777 77 5 5 5 111111 2222 5 5 5 2222 5 5 5 7 6 111111 99 5 44 9 999999 5 77 5 0000000000 2222 5 99 7 1 44 6 6 3 99 55 7 0 000 5555555555555555555555 6 99 6 1 111 6 6 6 6 666666666 3 111 111111 6 1 6 6 8 444 0 5555555555 88 666666 8 8 88 8 8 8 8 8 8 11 8 2 111111111111111111111111111111111111111111111111111 6 99 1 6 6 44444444 6 6 6 0 1 5555 6 99 4444444444444444444444 99 7 1 0000 55 6 1 6 0000000 6 111 5 6 99 99 3 555555555555555555555555555555555555555 3 3 1111 1 000 0 6666666 5 55 00000000000000 55 2222 3333333333333333333333333333333333333333333333333333333333333333333 55 4 99 4 4 4 555555 4 55 55 1111111 3 77 44 3 3 888888 44444444444444444444444444444444 3 6666 77777 0 7777777777777777 1111111 3 55 22 4 3 0 0 1 7 7 7 7 00 7 7 8888
lowQualScore : . .. . . . . .. . ...... .............................................................. . ... .. . . . ...... .... . . . .... . . . . . ...... .. . .. . ...... . .. . .......... .... . .. . . .. . . . .. .. . . ... ...................... . .. . . ... . . . . ......... . ... ...... . . . . . ... . .......... .. ...... . . .. . . . . . . .. . . ................................................... . .. . . . ........ . . . . . .... . .. ...................... .. . . .... .. . . . ....... . ... . . .. .. . ....................................... . . .... . ... . ....... . .. .............. .. .... ................................................................... .. . .. . . . ...... . .. .. ....... . .. .. . . ...... ................................ . .... ..... . ................ ....... . .. .. . . . . . . . . . .. . . ....
lowQualScore : 2 66 8 2 0 0 22 7 000000 22222222222222222222222222222222222222222222222222222222222222 7 999 99 7 7 7 444444 1111 7 7 7 1111 7 7 7 3 7 222222 22 2 55 4 444444 0 88 0 7777777777 1111 7 22 3 0 55 7 7 2 22 88 3 3 222 8888888888888888888888 7 22 7 0 777 7 7 7 7 777777777 5 777 555555 7 0 7 7 0 000 8 8888888888 88 222222 0 0 88 0 0 0 0 0 0 66 0 8 888888888888888888888888888888888888888888888888888 7 22 0 7 7 22222222 7 7 7 8 0 0000 7 22 8888888888888888888888 22 3 0 7777 88 7 0 7 8888888 7 777 7 7 22 22 2 222222222222222222222222222222222222222 5 5 7777 7 000 7 2222222 0 22 22222222222222 55 7777 3333333333333333333333333333333333333333333333333333333333333333333 55 0 55 0 0 0 555555 0 00 00 8888888 3 99 66 3 3 888888 99999999999999999999999999999999 1 5555 77777 5 9999999999999999 8888888 6 00 88 4 2 0 0 0 3 3 3 3 77 3 3 3333
consensus : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--ATAAAAA-------AA-A---------AAATCC------------GT--------TTT--TT-------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-C-AGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCTGA-T--CTCATCAT-GAATA-TA--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---GGG-CCAGT-CTT-A-GTCTATA-----------ACGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGA----------G------AC-----C-----------ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AACTAATAA--G-TTA---------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
Reference ( family-2017 ) : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--ATAAAAA-------AA-A---------AAATCC------------GT--------TTT--TT-------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-C-AGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-TA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCTGA-T--CTCATCAT-GAATA-TA--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---NGG-CCAGT-CTT-A-GTCTATA-----------ACGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGA----------G------AC-----C-----------ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AACTAATAA--G-TTA---------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
gi|1 : AGAAAGCCAAAATGTACGTTTTACGGTCGTCGGTA-GT--AA-TATTACGAGGTT--ATAAAAA-------AACA---------AAATCCTGAAGAAATTCGGT--------TTG--AT-------TTTTGTTACAACACATTCCGATTTTTAAATATGTTG-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAACC-CAAAA-GTCTCTGTTAATTGATCTCACGCA--TTTAACGATCGAGA-GTATGACC-T-TACATCAGCTATTAGTC-GATGACAAGGA-ATCA------TTTAACGGAAA-TTACTT-TA-CTGCTG----------AA-----GA-GCTGAA-A--AAC-ATTTTTGCAC-TTAGGTTTAAA-GATTCTTAATATAGAGAATTATG-GGCCG-TTTTGACTAATTGGGTCCAAAG--A----------------------AAAGGTCATG-TCGTA--GT-C-----GTAT-GTGAAA-TGAAC-TGTTACATGTAAGGCATTT---TGCGC---A--T-TG----GGAATGTT-AGCTG-C-GACATGCAA-AATTTACAAAG--------T--CTCACCATAGAATT-TAGGAAA-AT-AAAGATC--AC-CCATA-GAAC-TTTCA-AATCATT-TTGTACAAAC-TCTAAGGCTC-GGATTGACCGA-TAA---AA----------------G---------CT-GA-----------AG-GCTATGCA--ATGTCA-C-TGACTTG--------CGCAACATGACATCTTGTACCC---AGGCCCAGT-GTTCA-GTCTATT-----------AAGA--TGATCA-AACC-TTTC--GA-TAGGAT-TTC-------TA-TACCTTCCATA-GTGTC-TACT--GG--TAGTGAAGA----------A------AC-----TAAAAAGTTTGAATTAACAAGC-C--TTAA---TTTGA-------AATCA-CTGG-ATCG--GAAA-G--A--CAT--ATTAC----CA--------------------AA-----AAT--------AGTAAAGTATTC--TA-AATT--------TCTC--AGAT-TTCATTGAC-AAATT-GTGTGT-AACATCG------TC-CAA--CATTATT-------CA-CCATTCA-TT--T-C-A-------TC------T-----GTTC-----T----------A-GGC----TA-----AACTGATAAT-GTTTAACT------CTTT-------CAATCATTGATTATTTCAAAATTCTTA-GGGACTATCAAATATGAC-TGGA
gi|10 : agacctgtattaactcttccgtttcattcgtattgtttttaccaggttcT--ATTAC---AAA--------------------AA-----AAT--------AGAA----------TA----T--------TCTC--AGAT-T-CATTGA--AAA-T-GTGTAA-AACCTAGG-----TA-CAA--CAT--TT-------TA-CCTGTCATTC--T-C-AG------T-------T-----G-TC-----T----------A-GTCAATCTA-----AA-TAATAA--GGTTA---------CTTT-------CA-T-GT--ATTATTTTAAAATTTCCT-GGGcttgctttaaaggggaacttagcacaaaaaaatcagtt
gi|11 : gacatacatgTAGAAAGGCAAAAAATACGTTTTATGGTTGTCGGTG-GT--AA-AATTACGG---TAGATAAAAAAAAACGGAA-A---------AAATTTGG----------GT--------TTT--TTGTACAAATTTNGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGA-CTCGATCTGAA----TCAGCAAAGCACTT----GGTTTAA-A-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTT--AAAATTGGGA-GTTTGAATCC-AGCAT--GCTGCTAGTCGgacacccccctccctccgataaaatatttgtggtattagtgagccactcgctggttattgtactgacaaactctaaaattcaagaaaatcttactggcagcttcgttaggtaaacag
gi|13 : atacagacctgtttactcgtccgttttcaccgtatttcttacggCGAAGATTTA--T-CA-CTGATAT---------AATGATCCATGCTGAAGAGAAACAATATTTTCAC--TAGGTTTAAAAGATTCTT-ATAT-GAAA--TACTGGGCCG-TTTTGACAAATG--TTTCAAAGGTATGTTAGGTTACAAAATTGTTTCAAGAGT-ATGTTCGTT--ATATCA---GTATCGTGAAA-TGAACAT-TC---------ATATTT---GTCGCAGGG--C-GGAGAGGAAATGATATG-CGTC-GAC
gi|14 : cagcaggctgcgtaatgcaaattaaatctat------TT------T-----G-TC-----T----------A-GTC----TA-----AACTGATAAA-G-TAA---------CTTT-------CATT-GT--ATTATTTCAGAATTTATC-GGGggatggcaaccga
gi|15 : catttgca-T-ATTGA---TGTGATTAGCCTAATCAGCTG--ACC----AAAGGGGA--CAT--ATTGCGCAAAA--------------------AATAATTAAT--------AGTAGCGTATGTGATA-G--TATGTATTTTCTC--AGAT-TTCATTGA--CAA-T-GTGTGT-AACTTA---------------CAT--TT-------TC-CCTGCC--TT--TTC-AG------TCATCATCTCAACAA-TC-----T----------A-GTC----TA-----Aggattacgcccctccacccccccccctgacttaaatcataaataagtgccataatgtggcacttactggtgattgtactcaatgtattgataaaactcatataattcagataatcttactgtcaggcttgattgagggttaacagggctgcaaatcccccccccccacacttttgaaagtgaggg
gi|16 : taataT--ATTAC---AAA--------------------AA-----A-T--------ATTA----------TA----T--------TCTC--AGAT-TTCATTGA--AAA----TGTGT-AATCTAG------TC-AAA--CAT--TTTACCTCATA-CCTGTCT-TT--T-C-AG------TC------T-----G-TA-----T----------A-GTC----TA-----
gi|18 : gacatacatg-ACAA---ATTCTGATTTT--AA-ATGTTA-TGTGG-CCTGATCTGA-T---TTGGCAAAGCTCTT----TATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAATGTTTTttatttaaaaatttcttgtggaacac
gi|19 : AA--CAT--TT-------TA-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----TCAATAAGTCTA-GTC----TA-----AACTAATAA--GCTTATAAGGTTACCTTT-------CAAT-GT--ATTAT
gi|2 : TAGAAAGGTAAAAAA-AC-TTGTACG-TCGTCG-TGCGT--AA-AATTACGG---T--ATAAAAA-------AA-A---------AAATTC-------------T--------TTT--TT-------TTTTGT-ACAAGA-ATTCCGATTTT--AA--TGTTAATGTGA-TC-GATCTGAATCGATTAGCAAAGCGT-------ATTTAA-CGCAAAAAG----TGTT-ATTGAT-TCAAACATTTTTAAAGATTGAGATGTATGAAT-CCAGCAT--GCTGCTAGTCGGATGGCAGAGA-GTCTA-----TTGA-CGGAAATTTAC-T-CAACTGAT-----------AAT----CA--CTGA-GA--AACAATATTTTCAC-ATAGGTTTAAA-GATTTTT-AAATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAA-GGTG----------------------AAAGGT-ATGTGGGTTTTGT-TCA---GTAT-GTGAAAATGAAC-T-TC---------GCAT------GC-C---A--C-GGGGAAGGAATGAT-TGCCGTT-GACATGCAG-AAT---CGACATCTCTGACT--CTCATCAT-GAATA-TA--AAA-TTTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATC-CTGTACAAGC-TCTA-GACTC-GGATTGACCGACGAATGCAA----------------GGCATAGTGACC-GACTAATGC----AATGCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---TGG-CCAGT-CTT-A-G---ATA-----------GCGA--TG-TCAGA------TCA-GACCGAG---TTT-------TA-GA---TTCAGA-G-GTC-TACT--G---TAG----------------G------AC-----C-----------ATTAACATGC-T-GTTAG---TGTGA-------AATCA-CTGA-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGATGTTCATGCATTAAT-T-GTGTGA-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G--C-----T----------A-GTC----TA-----AGATAATAA--G-TTA---------TCTT-------CAAT-GT--ATTATTTCAAGATTTCCT-TGGACCAAGAAA-ATGACTTTGATCA-TCAATCTTAGATCATTGGACATACATGTATTACAAAAAAATAGAATATTCTCAGA-TTCATTGAAAATG----TGTAA
gi|20 : c-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----T----------A-GTC----TA-----GATTGACAAA-G-TTA---------CTAT-------CAAT-GT--ATTATTTCAAAATGTCAT-GGG
gi|23 : cGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-gga
gi|3 : GTCG-ATGGCAGAAATGTCT------TTGAGCGGAAATTTAC-T------GATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCAC-TTAGGTTTAAA----------------AA--TAT--GGCCGTTTATGACCAATC--GTCCAAAGGCG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTTGCATACGG---GGCC-GGGGAAGGAATGAT-TGCCGTC-GACGTACAG-AAT---CAAAGTCT-----------ATTA---------A--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAACTTTTAAGACTC-GGACNNNNNNNNNNN---NNNNNNNNNNNNNNTGATG---------CCGGA-TAAAGCTGGTAA-GCTATGCAATATGTCAGCATGA-TTG--------CG-AACATGA-AT-TTGTCCTCCCGGGG-CCAGTGCTT-CTGTCTAT------------AC-ATTTGATCAGAACCATTTC--GACTGAGGTATTC-------TAGGA---TTCAGGCGTGTCTTACTAGGG--TAGTGAAGAGCTAAAAGTTG------AC-----C-----------CATAACATGCGTGGTTGATTGTGTGA-------AATCA-CTGGAATCA--------------AT--ATTAC-----A--------------------AA-----AAT--------AGTC----------T--A--T--------TCTC--AGAT-TTCATT-A--AAA-TAGTGTATAAACCTAGCTAGGATCTCAAGGCAT--AT-------TACCCTGTC--TTTCT-C-AGCGTTGCTCAATAA-C-----G-TC-----T----------AGGTC----TGGTAATAACTAATAA--G-TTATAGTTTAC-CTTT-------CAAT-GT--ATTA-TACAAGATTT-CT-GGGACCAAGAAA-TTGAC-TGGATCATTCAA----AA-------GACAT--ATTTAATAC--AAAAATAGA--ATTCTCAGTTTTCATTGAAAATGGGCTTGTAAac
gi|4 : TAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--AAAAAAA-------AA-ATCCGGAAAAAGATCC------------TC--------TTT--TT-------TTTGGT-ACAC---ATTCCGATTTT--AA-ATGTTA-TGTGA-CCCGATCTGAAT----CAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTG-T-TCAAACAATTT-AAAGATTGAGA-GTATGAA---------------CTAGTTG-ATGGCAGAGATGTCT------TTGAATGGAAATTTAC-T-TA-CTGATG----------AAT----CA-GCTGAAGA--AAC--TATTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTCTGACTAA-----TCCAAAAGTGT---------------------GAAGGT-ATGTTTGTT--GT-TTACATTTAT-GTGAAA---GAC-T-TC---------GCATAT---TGCGC---A--C-GGGGAAGGAATGAT-TACCGTCGGACATGCAGCAAT---CAAGTTCTCTGA-CTGCTCATCGT-GAATATTA--AAATTT-AAAAATCTTACGCAATATGAACATTTTCAAATCATTATTGTACAAGC-TCTAAGACTCTGGAT--ACCGACTAA---AAT---------------G---------CC--A-T------------GCTATGCA--ATGTCAGC-T-A-TTG--------CG-AA-ATGC-AT-TTGT-CCC---TGG-CCAGT-C-T-A-G---A-A-----------ACGA--TG-TCAGA------TCAGAACTGAGGT-TTC-------TA-GA---TTCAGA-Gcgtactgtagttccaactcgcattt
gi|5 : gaatcgtcacagagttcataaattcatcagtcaatttcctcagagtttaatgcaaacctgtttactcttccgttttcaccgtatttcttacggGCAGAGATCTCTATGTGTTTGAACGGAAATTTAC-T-TA-CTGATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCACTAAAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GTCCGTTTTTGACCAATC--GTTCAAAGGTG----------------------AAAGGT-ATGTTTATT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCA-TT---TGCGC---A--CAGGGGAAGGAATGAT-TGCCGTC-AACATGCAG-AAT---CAAAGTCT-TAG-T-----ATCAT-GAAT--------A-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAT-GCT-AGACTC-AGATTGTCCGAC----------------------------------------TAAAGCTG--AA-GCTATGCA--ATGTCAAC-TGA-TTGCAAACAGCCG-AACATGA-AT-TTGT-CCC---GGG-CCAGT-GTTCA-GTCTATACATATGTAGATACGA--TGATCAGAACC-TTTC--GAATGAGGT-TTCTGCGTG-TA-GA---TTCAGA-ATGTT-TACT--GGTCTAGTGAAGA----------GCTCAAAATATTGAC-----------ATTAACATGC----TTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--G--GAC--ATTAC----AA--------------------AT-----AAT--------AGTA----------T--A--T--------TCTC--AGAT-TTCATTGA--AAA-T-ATATCT-AATCTAG------TC-CAA--CAT--TT-------TA-CTTGTC--TT--T-TAAG------TC------TGTCTAG-TC-----T----------A-GTC----TA-----AACTAACAAAGG-GGA---------CATA-------C-AT-GT--ATTA---CAAAA
gi|6 : aatccagcat-TAAAGCTG--AA-GCTATGCA--ATTTCAGC-TGA-TTT--------TG-AACAAGA-AT-TTGTCC----------------TT---GTCTATA------------CGA--TGATCAAAACC-TTTC--GAATGAGGT-TTCCATATTCTA-AA---TTCAGA-GTGTC-TAAT--GG--TAGGGAAGA----------G------CT-----C-----------A--AA-A-GT-T-GTT-A---T-TAA-------CATCA-CTGG-ATCATTGAAAGG--AGACAT--TTTGC---AAAAAGCAAAAAAAAAAAAAAAAAA-----AATTGGACAAAAGTA----------TATA--T--------TCTCTCAGAT-TTCATTGA--AAA-T-GTGTGT-AACCTTG------TC-CAT--TAA--TT-------TC-CTTGTCT-TT--T-C-AG------TC------T-----G-TCTAGTGT----------A-GTC----TA-----AACTGATAG--G-TTA---------CTTTTGATGTACAGT-GT--ATTATTCCAAAATTTCAT-GGG
gi|7 : acAGA-GTGTC-TACT--GG--TAGTGA---------------------------C-----------ATTAACATGC-T---TGA---TGTGA-------AATCA-CTGA-ATCGTTGAAAGGGGA--CAT--ATTAC---AAA--------------------AA-----A-T--------AGTA----------TA----T--------TCTC--AGAT-TTCATTGA--AAT-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AGATAATAA--GGTTA---------CTTT-------CAAT-GT--ATTATTTCAAGATTTCTTGGGGACCAAG-AA-ATGAC-TTGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAAggatcttcccgacttgagtatgtggcactctctggtgattgtactgacaaactcgaaaaattctgcaaatcttactgacaggcttcattgaaagtaaacgggtcatatggtatgata
gi|7 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgA-------AATCA-TTGG-A-CAT---------A--CATGTATTAC---AAA--------------------AA-----A-T--------AGAA----------TA----T--------TCTC--AGAT-TTCATTGA--AAA-T-GTG--T-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTCA-TT--T-C-AG------TC------T-----G-TC-----TAGTCA-----A-GTC----TA-----AACTAATAAG-G-TTA---------CTTT-------CAAT-GT--ATTATTTTAAAATTCCTT-GGGcctagtccaacattttacctgtcatttcagtctgtctagtcaagtctaaactaataaggttactttcaatgtattattttaaaattccttggggacaccc
gi|8 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgagagtgtctactggtagtgacattaacatgcttgatgtgaaatcactgaatcgttgaaaggggacatattacaaaaaatagtatattctcagatttcattgaaattgtgtgtaacctagtccaacattttacctgtcttttcagtctgtctagtctaagataataaggttactttcaatgtattatttcaagatttcttggggaccaagaaatgacttgatcattcaatctt--AA-AAATGCGG---T--TTACGGA-------AA-A---------A-----------------GT--------TTTGCTA-------TTTTGT-AGAA---ATTCTTATTTT--AA-ATGTTA-TGTGGGCCCGATCTGA-----TCAGCAAAGCGCTTTTAAAATTTAA-C-AAAAG-G----TGTT-ATTGAT-TCAAGCA-CTTTAAAAATTGAGA-GCATGAA----ACCAT--GCC--------GATGGCATAGA------------TGAACGGAAATTTAA-TATA-TTGATGTGATTAGCCTAAT----CA-GCTGAgacaccc
gi|9 : tcctcacatttcatatagaagtttatgatacatattttgccataaagattcagacctgtttactcttccccaccgtatttctaaaaaaaaaAGAGG--AAAAAT-CGTTTT-CGATCGTCT-TG-GTTTAACAATTACGA------GTAAAAA-------AA-A---------AAATCC------------GCAGAAAAGATTCCGTT-------TTTTGC--CAA---ATTCCGATTTT--AA-ATGTTA-TGTGA-CCCGATCTGAAT----CAGCCAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAACA-TTTTAAAGATTGAGA-GTATGAATGC-AGCAT--GCTGCCAGTC-GATGGCAGAGATGTCT------TTGAACGGAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACTCTCTGGTGATTGTACTGACAAAATCTCAAGATTCTGCAGAATCATTGAGGGGAAACAGGTCTGTTAAATGATAGGTGGTTTCAGGAGACTCAGTGGTCACATCCAAGGAAGACAGAACATCAGAGAGGGTGGCAGTGATGGTTCCTAAGATCCTTTTATCTGGAGAACTGAAGGCGACAGTGAATGGCAAACATAAAGCACTGGATGGATTGGTGGCAAAACCAACATCATTGGTCCTCTGCTTTAATCTTGAAATTAC
Unaligned ( gi|17 ): ACTGGTGAATGTAATGACAAAAGTCTAAAAATTCAGATAATCTTACAGACTGGCTTGATTGAGGGTTAACAGGTCAGCAAATACCCCCTACCACTTTTGAAATGGGGG
Unaligned ( gi|21 ): AAGTGCCATATTGTGGCACTTACAGGTGATTGTACCCAATGTATTGATAAAACTCATATAATTCAAAGAA
Unaligned ( gi|22 ): TGACTGGTCAGAGTTCATACACACTCTATCCTGAACGTTTCCTCTGAACAGCCTATGTTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222 33333333333333333 777777777777777777777777777777777777 111 22222 1111 1111 11 333333 1 111111 3333333333 1111 11 11 111 6666666666666666666666 111 222222222 111 222222 111 4444444444 222222 333333333333333333333333333333333333333333333333333 22222222 2222 4444444444444444444444 1111 11 4444444 111 888888888888888888888888888888888888888 2222 111 1111111 22222222222222 1111 5555555555555555555555555555555555555555555555555555555555555555555 111111 1111111 11 1 22222222222222222222222222222222 3333333333333333 1111111 1 1 22 2222
lowQualScore : 3 11 0 3 0 8 99 6 000000 99999999999999999 6 1 666666666666666666666666666666666666 5 777 77 5 5 5 33333 2222 5 5 5 2222 5 5 99 6 111111 99 5 5 9 999999 5 99 5 0000000000 2222 5 99 7 1 44 6 6 3 99 55 7 0 000 5555555555555555555555 6 99 6 1 111 6 6 6 6 666666666 3 111 111111 6 1 6 6 8 444 0 5555555555 88 666666 8 8 88 8 8 8 8 8 8 11 8 2 111111111111111111111111111111111111111111111111111 6 99 1 6 6 44444444 6 6 6 2 1 1111 6 99 4444444444444444444444 99 7 1 0000 55 6 1 6 0000000 6 111 5 6 99 99 3 555555555555555555555555555555555555555 3 3 1111 1 000 0 6666666 5 55 00000000000000 55 2222 3333333333333333333333333333333333333333333333333333333333333333333 55 4 99 4 4 4 555555 4 55 55 1111111 3 77 44 3 3 888888 44444444444444444444444444444444 3 6666 77777 0 7777777777777777 1111111 3 55 22 4 3 0 0 1 7 7 7 7 00 7 7 8888
lowQualScore : . .. . . . . .. . ...... ................. . . .................................... . ... .. . . . ..... .... . . . .... . . .. . ...... .. . . . ...... . .. . .......... .... . .. . . .. . . . .. .. . . ... ...................... . .. . . ... . . . . ......... . ... ...... . . . . . ... . .......... .. ...... . . .. . . . . . . .. . . ................................................... . .. . . . ........ . . . . . .... . .. ...................... .. . . .... .. . . . ....... . ... . . .. .. . ....................................... . . .... . ... . ....... . .. .............. .. .... ................................................................... .. . .. . . . ...... . .. .. ....... . .. .. . . ...... ................................ . .... ..... . ................ ....... . .. .. . . . . . . . . . .. . . ....
lowQualScore : 2 66 8 2 0 0 22 7 000000 33333333333333333 7 7 222222222222222222222222222222222222 7 999 99 7 7 7 44444 1111 7 7 7 1111 7 7 33 7 222222 22 2 0 4 444444 0 22 0 7777777777 1111 7 22 3 0 55 7 7 2 22 88 3 3 222 8888888888888888888888 7 22 7 0 777 7 7 7 7 777777777 5 777 555555 7 0 7 7 0 000 8 8888888888 88 222222 0 0 88 0 0 0 0 0 0 66 0 8 888888888888888888888888888888888888888888888888888 7 22 0 7 7 22222222 7 7 7 5 0 0000 7 22 8888888888888888888888 22 3 0 7777 88 7 0 7 8888888 7 777 7 7 22 22 2 222222222222222222222222222222222222222 5 5 7777 7 000 7 2222222 0 22 22222222222222 55 7777 3333333333333333333333333333333333333333333333333333333333333333333 55 0 55 0 0 0 555555 0 00 00 8888888 3 99 66 3 3 888888 99999999999999999999999999999999 1 5555 77777 5 9999999999999999 8888888 6 00 88 4 2 0 0 0 3 3 3 3 77 3 3 3333
consensus : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATCC------------GT--------TTT--TT-------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-C-AGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCTGA-T--CTCATCAT-GAATA-TA--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---GGG-CCAGT-CTT-A-GTCTATA-----------ACGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGA----------G------AC-----C-----------ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AACTAATAA--G-TTA---------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
Reference ( family-2017 ) : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATCC------------GT--------TTT--TT-------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-C-AGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCTGA-T--CTCATCAT-GAATA-TA--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---GGG-CCAGT-CTT-A-GTCTATA-----------ACGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGA----------G------AC-----C-----------ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AACTAATAA--G-TTA---------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
gi|1 : AGAAAGCCAAAATGTACGTTTTACGGTCGTCGGTA-GT--AA-TATTACGAGGTT--ATAAAA---------A-------AACAAAATCCTGAAGAAATTCGGT--------TTG--AT-------TTTTGTTACAACACATTCCGATTTTTAAATATGTTG-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAACC-CAAAA-GTCTCTGTTAATTGATCTCACGCA--TTTAACGATCGAGA-GTATGACC-T-TACATCAGCTATTAGTC-GATGACAAGGA-ATCA------TTTAACGGAAA-TTACTT-TA-CTGCTG----------AA-----GA-GCTGAA-A--AAC-ATTTTTGCAC-TTAGGTTTAAA-GATTCTTAATATAGAGAATTATG-GGCCG-TTTTGACTAATTGGGTCCAAAG--A----------------------AAAGGTCATG-TCGTA--GT-C-----GTAT-GTGAAA-TGAAC-TGTTACATGTAAGGCATTT---TGCGC---A--T-TG----GGAATGTT-AGCTG-C-GACATGCAA-AATTTACAAAG--------T--CTCACCATAGAATT-TAGGAAA-AT-AAAGATC--AC-CCATA-GAAC-TTTCA-AATCATT-TTGTACAAAC-TCTAAGGCTC-GGATTGACCGA-TAA---AA----------------G---------CT-GA-----------AG-GCTATGCA--ATGTCA-C-TGACTTG--------CGCAACATGACATCTTGTACCC---AGGCCCAGT-GTTCA-GTCTATT-----------AAGA--TGATCA-AACC-TTTC--GA-TAGGAT-TTC-------TA-TACCTTCCATA-GTGTC-TACT--GG--TAGTGAAGA----------A------AC-----TAAAAAGTTTGAATTAACAAGC-C--TTAA---TTTGA-------AATCA-CTGG-ATCG--GAAA-G--A--CAT--ATTAC----CA--------------------AA-----AAT--------AGTAAAGTATTC--TA-AATT--------TCTC--AGAT-TTCATTGAC-AAATT-GTGTGT-AACATCG------TC-CAA--CATTATT-------CA-CCATTCA-TT--T-C-A-------TC------T-----GTTC-----T----------A-GGC----TA-----AACTGATAAT-GTTTAACT------CTTT-------CAATCATTGATTATTTCAAAATTCTTA-GGGACTATCAAATATGAC-TGGA
gi|10 : agacctgtattaactcttccgtttcattcgtattgtttttaccaggttcT--ATTAC---AAA--------------------AA-----AAT--------AGAA----------TA----T--------TCTC--AGAT-T-CATTGA--AAA-T-GTGTAA-AACCTAGG-----TA-CAA--CAT--TT-------TA-CCTGTCATTC--T-C-AG------T-------T-----G-TC-----T----------A-GTCAATCTA-----AA-TAATAA--GGTTA---------CTTT-------CA-T-GT--ATTATTTTAAAATTTCCT-GGGcttgctttaaaggggaacttagcacaaaaaaatcagtt
gi|11 : gacatacatgTAGAAAGGCAAAAAATACGTTTTATGGTTGTCGGTG-GT--AA-AATTACGG---TAGATAAAA---------AAAAACGGAA-AAAATTTGG----------GT--------TTT--TTGTACAAATTTNGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGA-CTCGATCTGAA----TCAGCAAAGCACTT----GGTTTAA-A-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTT--AAAATTGGGA-GTTTGAATCC-AGCAT--GCTGCTAGTCGgacacccccctccctccgataaaatatttgtggtattagtgagccactcgctggttattgtactgacaaactctaaaattcaagaaaatcttactggcagcttcgttaggtaaacag
gi|13 : atacagacctgtttactcgtccgttttcaccgtatttcttacggCGAAGATTTA--T-CA-CTGATAT---------AATGATCCATGCTGAAGAGAAACAATATTTTCAC--TAGGTTTAAAAGATTCTT-ATAT-GAAA--TACTGGGCCG-TTTTGACAAATG--TTTCAAAGGTATGTTAGGTTACAAAATTGTTTCAAGAGT-ATGTTCGTT--ATATCA---GTATCGTGAAA-TGAACAT-TC---------ATATTT---GTCGCAGGG--C-GGAGAGGAAATGATATG-CGTC-GAC
gi|14 : cagcaggctgcgtaatgcaaattaaatctat------TT------T-----G-TC-----T----------A-GTC----TA-----AACTGATAAA-G-TAA---------CTTT-------CATT-GT--ATTATTTCAGAATTTATC-GGGggatggcaaccga
gi|15 : catttgca-T-ATTGA---TGTGATTAGCCTAATCAGCTG--ACC----AAAGGGGA--CAT--ATTGCGCAAAA--------------------AATAATTAAT--------AGTAGCGTATGTGATA-G--TATGTATTTTCTC--AGAT-TTCATTGA--CAA-T-GTGTGT-AACTTA---------------CAT--TT-------TC-CCTGCC--TT--TTC-AG------TCATCATCTCAACAA-TC-----T----------A-GTC----TA-----Aggattacgcccctccacccccccccctgacttaaatcataaataagtgccataatgtggcacttactggtgattgtactcaatgtattgataaaactcatataattcagataatcttactgtcaggcttgattgagggttaacagggctgcaaatcccccccccccacacttttgaaagtgaggg
gi|16 : taataT--ATTAC---AAA--------------------AA-----A-T--------ATTA----------TA----T--------TCTC--AGAT-TTCATTGA--AAA----TGTGT-AATCTAG------TC-AAA--CAT--TTTACCTCATA-CCTGTCT-TT--T-C-AG------TC------T-----G-TA-----T----------A-GTC----TA-----
gi|18 : gacatacatg-ACAA---ATTCTGATTTT--AA-ATGTTA-TGTGG-CCTGATCTGA-T---TTGGCAAAGCTCTT----TATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAATGTTTTttatttaaaaatttcttgtggaacac
gi|19 : AA--CAT--TT-------TA-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----TCAATAAGTCTA-GTC----TA-----AACTAATAA--GCTTATAAGGTTACCTTT-------CAAT-GT--ATTAT
gi|2 : TAGAAAGGTAAAAAA-AC-TTGTACG-TCGTCG-TGCGT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATTC-------------T--------TTT--TT-------TTTTGT-ACAAGA-ATTCCGATTTT--AA--TGTTAATGTGA-TC-GATCTGAATCGATTAGCAAAGCGT-------ATTTAA-CGCAAAAAG----TGTT-ATTGAT-TCAAACATTTTTAAAGATTGAGATGTATGAAT-CCAGCAT--GCTGCTAGTCGGATGGCAGAGA-GTCTA-----TTGA-CGGAAATTTAC-T-CAACTGAT-----------AAT----CA--CTGA-GA--AACAATATTTTCAC-ATAGGTTTAAA-GATTTTT-AAATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAA-GGTG----------------------AAAGGT-ATGTGGGTTTTGT-TCA---GTAT-GTGAAAATGAAC-T-TC---------GCAT------GC-C---A--C-GGGGAAGGAATGAT-TGCCGTT-GACATGCAG-AAT---CGACATCTCTGACT--CTCATCAT-GAATA-TA--AAA-TTTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATC-CTGTACAAGC-TCTA-GACTC-GGATTGACCGACGAATGCAA----------------GGCATAGTGACC-GACTAATGC----AATGCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---TGG-CCAGT-CTT-A-G---ATA-----------GCGA--TG-TCAGA------TCA-GACCGAG---TTT-------TA-GA---TTCAGA-G-GTC-TACT--G---TAG----------------G------AC-----C-----------ATTAACATGC-T-GTTAG---TGTGA-------AATCA-CTGA-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGATGTTCATGCATTAAT-T-GTGTGA-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G--C-----T----------A-GTC----TA-----AGATAATAA--G-TTA---------TCTT-------CAAT-GT--ATTATTTCAAGATTTCCT-TGGACCAAGAAA-ATGACTTTGATCA-TCAATCTTAGATCATTGGACATACATGTATTACAAAAAAATAGAATATTCTCAGA-TTCATTGAAAATG----TGTAA
gi|20 : c-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----T----------A-GTC----TA-----GATTGACAAA-G-TTA---------CTAT-------CAAT-GT--ATTATTTCAAAATGTCAT-GGG
gi|23 : cGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-gga
gi|3 : GTCG-ATGGCAGAAATGTCT------TTGAGCGGAAATTTAC-T------GATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCAC-TTAGGTTTAAA----------------AA--TAT--GGCCGTTTATGACCAATC--GTCCAAAGGCG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTTGCATACGG---GGCC-GGGGAAGGAATGAT-TGCCGTC-GACGTACAG-AAT---CAAAGTCT-----------ATTA---------A--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAACTTTTAAGACTC-GGACNNNNNNNNNNN---NNNNNNNNNNNNNNTGATG---------CCGGA-TAAAGCTGGTAA-GCTATGCAATATGTCAGCATGA-TTG--------CG-AACATGA-AT-TTGTCCTCCCGGGG-CCAGTGCTT-CTGTCTAT------------AC-ATTTGATCAGAACCATTTC--GACTGAGGTATTC-------TAGGA---TTCAGGCGTGTCTTACTAGGG--TAGTGAAGAGCTAAAAGTTG------AC-----C-----------CATAACATGCGTGGTTGATTGTGTGA-------AATCA-CTGGAATCA--------------AT--ATTAC-----A--------------------AA-----AAT--------AGTC----------T--A--T--------TCTC--AGAT-TTCATT-A--AAA-TAGTGTATAAACCTAGCTAGGATCTCAAGGCAT--AT-------TACCCTGTC--TTTCT-C-AGCGTTGCTCAATAA-C-----G-TC-----T----------AGGTC----TGGTAATAACTAATAA--G-TTATAGTTTAC-CTTT-------CAAT-GT--ATTA-TACAAGATTT-CT-GGGACCAAGAAA-TTGAC-TGGATCATTCAA----AA-------GACAT--ATTTAATAC--AAAAATAGA--ATTCTCAGTTTTCATTGAAAATGGGCTTGTAAac
gi|4 : TAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--AAAAAAAAAATCCGGA-------AA-AAGATCC------------TC--------TTT--TT-------TTTGGT-ACAC---ATTCCGATTTT--AA-ATGTTA-TGTGA-CCCGATCTGAA----TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTG-T-TCAAACA-ATTTAAAGATTGAGA-GTATGAA---------------CTAGTT-GATGGCAGAGATGTCT------TTGAATGGAAATTTAC-T-TA-CTGATG----------AAT----CA-GCTGAAGA--AAC--TATTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTCTGACTAA-----TCCAAAAGTGT---------------------GAAGGT-ATGTTTGTT--GT-TTACATTTAT-GTGAAA---GAC-T-TC---------GCATAT---TGCGC---A--C-GGGGAAGGAATGAT-TACCGTCGGACATGCAGCAAT---CAAGTTCTCTGA-CTGCTCATCGT-GAATATTA--AAATTT-AAAAATCTTACGCAATATGAACATTTTCAAATCATTATTGTACAAGC-TCTAAGACTCTGGAT--ACCGACTAA---AAT---------------G---------CC--A-T------------GCTATGCA--ATGTCAGC-T-A-TTG--------CG-AA-ATGC-AT-TTGTCCCT----GG-CCAGT-C-T-A-G---A-A-----------ACGA--TG-TCAGA------TCAGAACTGAGGT-TTC-------TA-GA---TTCAGA-Gcgtactgtagttccaactcgcattt
gi|5 : gaatcgtcacagagttcataaattcatcagtcaatttcctcagagtttaatgcaaacctgtttactcttccgttttcaccgtatttcttacggGCAGAGATCTCTATGTGTTTGAACGGAAATTTAC-T-TA-CTGATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCACTAAAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GTCCGTTTTTGACCAATC--GTTCAAAGGTG----------------------AAAGGT-ATGTTTATT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCA-TT---TGCGC---A--CAGGGGAAGGAATGAT-TGCCGTC-AACATGCAG-AAT---CAAAGTCT-TAG-T-----ATCAT-GAAT--------A-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAT-GCT-AGACTC-AGATTGTCCGAC----------------------------------------TAAAGCTG--AA-GCTATGCA--ATGTCAAC-TGA-TTGCAAACAGCCG-AACATGA-AT-TTGT-CCC---GGG-CCAGT-GTTCA-GTCTATACATATGTAGATACGA--TGATCAGAACC-TTTC--GAATGAGGT-TTCTGCGTG-TA-GA---TTCAGA-ATGTT-TACT--GGTCTAGTGAAGA----------GCTCAAAATATTGAC-----------ATTAACATGC----TTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--G--GAC--ATTAC----AA--------------------AT-----AAT--------AGTA----------T--A--T--------TCTC--AGAT-TTCATTGA--AAA-T-ATATCT-AATCTAG------TC-CAA--CAT--TT-------TA-CTTGTC--TT--T-TAAG------TC------TGTCTAG-TC-----T----------A-GTC----TA-----AACTAACAAAGG-GGA---------CATA-------C-AT-GT--ATTA---CAAAA
gi|6 : aatccagcat-TAAAGCTG--AA-GCTATGCA--ATTTCAGC-TGA-TTT--------TG-AACAAGA-AT-TTGTCC----------------TT---GTCTATA------------CGA--TGATCAAAACC-TTTC--GAATGAGGT-TTCCATATTCTA-AA---TTCAGA-GTGTC-TAAT--GG--TAGGGAAGA----------G------CT-----C-----------A--AA-A-GT-T-GTT-A---T-TAA-------CATCA-CTGG-ATCATTGAAAGG--AGACAT--TTTGC---AAAAAGCAAAAAAAAAAAAAAAAAA-----AATTGGACAAAAGTA----------TATA--T--------TCTCTCAGAT-TTCATTGA--AAA-T-GTGTGT-AACCTTG------TC-CAT--TAA--TT-------TC-CTTGTCT-TT--T-C-AG------TC------T-----G-TCTAGTGT----------A-GTC----TA-----AACTGATAG--G-TTA---------CTTTTGATGTACAGT-GT--ATTATTCCAAAATTTCAT-GGG
gi|7 : acAGA-GTGTC-TACT--GG--TAGTGA---------------------------C-----------ATTAACATGC-T---TGA---TGTGA-------AATCA-CTGA-ATCGTTGAAAGGGGA--CAT--ATTAC---AAA--------------------AA-----A-T--------AGTA----------TA----T--------TCTC--AGAT-TTCATTGA--AAT-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AGATAATAA--GGTTA---------CTTT-------CAAT-GT--ATTATTTCAAGATTTCTTGGGGACCAAG-AA-ATGAC-TTGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAAggatcttcccgacttgagtatgtggcactctctggtgattgtactgacaaactcgaaaaattctgcaaatcttactgacaggcttcattgaaagtaaacgggtcatatggtatgata
gi|7 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgA-------AATCA-TTGG-A-CAT---------A--CATGTATTAC---AAA--------------------AA-----A-T--------AGAA----------TA----T--------TCTC--AGAT-TTCATTGA--AAA-T-GTG--T-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTCA-TT--T-C-AG------TC------T-----G-TC-----TAGTCA-----A-GTC----TA-----AACTAATAAG-G-TTA---------CTTT-------CAAT-GT--ATTATTTTAAAATTCCTT-GGGcctagtccaacattttacctgtcatttcagtctgtctagtcaagtctaaactaataaggttactttcaatgtattattttaaaattccttggggacaccc
gi|8 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgagagtgtctactggtagtgacattaacatgcttgatgtgaaatcactgaatcgttgaaaggggacatattacaaaaaatagtatattctcagatttcattgaaattgtgtgtaacctagtccaacattttacctgtcttttcagtctgtctagtctaagataataaggttactttcaatgtattatttcaagatttcttggggaccaagaaatgacttgatcattcaatctt--AA-AAATGCGG---T--TTACGG---------A-------AA-AA-----------------GT--------TTTGCTA-------TTTTGT-AGAA---ATTCTTATTTT--AA-ATGTTA-TGTGGGCCCGATCTGA-----TCAGCAAAGCGCTTTTAAAATTTAA-C-AAAAG-G----TGTT-ATTGAT-TCAAGCA-CTTTAAAAATTGAGA-GCATGAA----ACCAT--GCC--------GATGGCATAGA------------TGAACGGAAATTTAA-TATA-TTGATGTGATTAGCCTAAT----CA-GCTGAgacaccc
gi|9 : tcctcacatttcatatagaagtttatgatacatattttgccataaagattcagacctgtttactcttccccaccgtatttctaaaaaaaaaAGAGG--AAAAAT-CGTTTT-CGATCGTCT-TG-GTTTAACAATTACGA------GTAAAA---------A-------AA-AAAATCC------------GCAGAAAAGATTCCGTT-------TTTTGC--CAA---ATTCCGATTTT--AA-ATGTTA-TGTGA-CCCGATCTGAAT----CAGCCAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAACA-TTTTAAAGATTGAGA-GTATGAATGC-AGCAT--GCTGCCAGTC-GATGGCAGAGATGTCT------TTGAACGGAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACTCTCTGGTGATTGTACTGACAAAATCTCAAGATTCTGCAGAATCATTGAGGGGAAACAGGTCTGTTAAATGATAGGTGGTTTCAGGAGACTCAGTGGTCACATCCAAGGAAGACAGAACATCAGAGAGGGTGGCAGTGATGGTTCCTAAGATCCTTTTATCTGGAGAACTGAAGGCGACAGTGAATGGCAAACATAAAGCACTGGATGGATTGGTGGCAAAACCAACATCATTGGTCCTCTGCTTTAATCTTGAAATTAC
Unaligned ( gi|17 ): ACTGGTGAATGTAATGACAAAAGTCTAAAAATTCAGATAATCTTACAGACTGGCTTGATTGAGGGTTAACAGGTCAGCAAATACCCCCTACCACTTTTGAAATGGGGG
Unaligned ( gi|21 ): AAGTGCCATATTGTGGCACTTACAGGTGATTGTACCCAATGTATTGATAAAACTCATATAATTCAAAGAA
Unaligned ( gi|22 ): TGACTGGTCAGAGTTCATACACACTCTATCCTGAACGTTTCCTCTGAACAGCCTATGTTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 1 222222 33333333333333333 777777777777777777777777777777777777 111 22222 1111 1111 11 333333 1 111111 3333333333 1111 11 11 111 6666666666666666666666 111 222222222 111 222222 111 4444444444 222222 333333333333333333333333333333333333333333333333333 22222222 2222 4444444444444444444444 1111 11 4444444 111 888888888888888888888888888888888888888 2222 111 1111111 22222222222222 1111 5555555555555555555555555555555555555555555555555555555555555555555 111111 1111111 11 1 22222222222222222222222222222222 3333333333333333 1111111 1 1 22 2222
lowQualScore : 3 11 0 3 0 8 99 6 000000 99999999999999999 6 1 666666666666666666666666666666666666 5 777 77 5 5 5 33333 2222 5 5 5 2222 5 5 99 6 111111 99 5 5 9 999999 5 99 5 0000000000 2222 5 99 7 1 44 6 6 3 99 55 7 0 000 5555555555555555555555 6 99 6 1 111 6 6 6 6 666666666 3 111 111111 6 1 6 6 8 444 0 5555555555 88 666666 8 8 88 8 8 8 8 8 8 11 8 2 111111111111111111111111111111111111111111111111111 6 99 1 6 6 44444444 6 6 6 2 1 1111 6 99 4444444444444444444444 99 7 1 0000 55 6 1 6 0000000 6 111 5 6 99 99 3 555555555555555555555555555555555555555 3 3 1111 1 000 0 6666666 5 55 00000000000000 55 2222 3333333333333333333333333333333333333333333333333333333333333333333 55 4 99 4 4 4 555555 4 55 55 1111111 3 77 44 3 3 888888 44444444444444444444444444444444 3 6666 77777 0 7777777777777777 1111111 3 55 22 4 3 0 0 1 7 7 7 7 00 7 7 8888
lowQualScore : . .. . . . . .. . ...... ................. . . .................................... . ... .. . . . ..... .... . . . .... . . .. . ...... .. . . . ...... . .. . .......... .... . .. . . .. . . . .. .. . . ... ...................... . .. . . ... . . . . ......... . ... ...... . . . . . ... . .......... .. ...... . . .. . . . . . . .. . . ................................................... . .. . . . ........ . . . . . .... . .. ...................... .. . . .... .. . . . ....... . ... . . .. .. . ....................................... . . .... . ... . ....... . .. .............. .. .... ................................................................... .. . .. . . . ...... . .. .. ....... . .. .. . . ...... ................................ . .... ..... . ................ ....... . .. .. . . . . . . . . . .. . . ....
lowQualScore : 2 66 8 2 0 0 22 7 000000 33333333333333333 7 7 222222222222222222222222222222222222 7 999 99 7 7 7 44444 1111 7 7 7 1111 7 7 33 7 222222 22 2 0 4 444444 0 22 0 7777777777 1111 7 22 3 0 55 7 7 2 22 88 3 3 222 8888888888888888888888 7 22 7 0 777 7 7 7 7 777777777 5 777 555555 7 0 7 7 0 000 8 8888888888 88 222222 0 0 88 0 0 0 0 0 0 66 0 8 888888888888888888888888888888888888888888888888888 7 22 0 7 7 22222222 7 7 7 5 0 0000 7 22 8888888888888888888888 22 3 0 7777 88 7 0 7 8888888 7 777 7 7 22 22 2 222222222222222222222222222222222222222 5 5 7777 7 000 7 2222222 0 22 22222222222222 55 7777 3333333333333333333333333333333333333333333333333333333333333333333 55 0 55 0 0 0 555555 0 00 00 8888888 3 99 66 3 3 888888 99999999999999999999999999999999 1 5555 77777 5 9999999999999999 8888888 6 00 88 4 2 0 0 0 3 3 3 3 77 3 3 3333
consensus : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATCC------------GT--------TTT--TT-------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-C-AGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCTGA-T--CTCATCAT-GAATA-TA--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---GGG-CCAGT-CTT-A-GTCTATA-----------ACGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGA----------G------AC-----C-----------ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AACTAATAA--G-TTA---------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
Reference ( family-2017 ) : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATCC------------GT--------TTT--TT-------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-C-AGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCTGA-T--CTCATCAT-GAATA-TA--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---GGG-CCAGT-CTT-A-GTCTATA-----------ACGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGA----------G------AC-----C-----------ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AACTAATAA--G-TTA---------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
gi|1 : AGAAAGCCAAAATGTACGTTTTACGGTCGTCGGTA-GT--AA-TATTACGAGGTT--ATAAAA---------A-------AACAAAATCCTGAAGAAATTCGGT--------TTG--AT-------TTTTGTTACAACACATTCCGATTTTTAAATATGTTG-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAACC-CAAAA-GTCTCTGTTAATTGATCTCACGCA--TTTAACGATCGAGA-GTATGACC-T-TACATCAGCTATTAGTC-GATGACAAGGA-ATCA------TTTAACGGAAA-TTACTT-TA-CTGCTG----------AA-----GA-GCTGAA-A--AAC-ATTTTTGCAC-TTAGGTTTAAA-GATTCTTAATATAGAGAATTATG-GGCCG-TTTTGACTAATTGGGTCCAAAG--A----------------------AAAGGTCATG-TCGTA--GT-C-----GTAT-GTGAAA-TGAAC-TGTTACATGTAAGGCATTT---TGCGC---A--T-TG----GGAATGTT-AGCTG-C-GACATGCAA-AATTTACAAAG--------T--CTCACCATAGAATT-TAGGAAA-AT-AAAGATC--AC-CCATA-GAAC-TTTCA-AATCATT-TTGTACAAAC-TCTAAGGCTC-GGATTGACCGA-TAA---AA----------------G---------CT-GA-----------AG-GCTATGCA--ATGTCA-C-TGACTTG--------CGCAACATGACATCTTGTACCC---AGGCCCAGT-GTTCA-GTCTATT-----------AAGA--TGATCA-AACC-TTTC--GA-TAGGAT-TTC-------TA-TACCTTCCATA-GTGTC-TACT--GG--TAGTGAAGA----------A------AC-----TAAAAAGTTTGAATTAACAAGC-C--TTAA---TTTGA-------AATCA-CTGG-ATCG--GAAA-G--A--CAT--ATTAC----CA--------------------AA-----AAT--------AGTAAAGTATTC--TA-AATT--------TCTC--AGAT-TTCATTGAC-AAATT-GTGTGT-AACATCG------TC-CAA--CATTATT-------CA-CCATTCA-TT--T-C-A-------TC------T-----GTTC-----T----------A-GGC----TA-----AACTGATAAT-GTTTAACT------CTTT-------CAATCATTGATTATTTCAAAATTCTTA-GGGACTATCAAATATGAC-TGGA
gi|10 : agacctgtattaactcttccgtttcattcgtattgtttttaccaggttcT--ATTAC---AAA--------------------AA-----AAT--------AGAA----------TA----T--------TCTC--AGAT-T-CATTGA--AAA-T-GTGTAA-AACCTAGG-----TA-CAA--CAT--TT-------TA-CCTGTCATTC--T-C-AG------T-------T-----G-TC-----T----------A-GTCAATCTA-----AA-TAATAA--GGTTA---------CTTT-------CA-T-GT--ATTATTTTAAAATTTCCT-GGGcttgctttaaaggggaacttagcacaaaaaaatcagtt
gi|11 : gacatacatgTAGAAAGGCAAAAAATACGTTTTATGGTTGTCGGTG-GT--AA-AATTACGG---TAGATAAAA---------AAAAACGGAA-AAAATTTGG----------GT--------TTT--TTGTACAAATTTNGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGA-CTCGATCTGAA----TCAGCAAAGCACTT----GGTTTAA-A-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTT--AAAATTGGGA-GTTTGAATCC-AGCAT--GCTGCTAGTCGgacacccccctccctccgataaaatatttgtggtattagtgagccactcgctggttattgtactgacaaactctaaaattcaagaaaatcttactggcagcttcgttaggtaaacag
gi|13 : atacagacctgtttactcgtccgttttcaccgtatttcttacggCGAAGATTTA--T-CA-CTGATAT---------AATGATCCATGCTGAAGAGAAACAATATTTTCAC--TAGGTTTAAAAGATTCTT-ATAT-GAAA--TACTGGGCCG-TTTTGACAAATG--TTTCAAAGGTATGTTAGGTTACAAAATTGTTTCAAGAGT-ATGTTCGTT--ATATCA---GTATCGTGAAA-TGAACAT-TC---------ATATTT---GTCGCAGGG--C-GGAGAGGAAATGATATG-CGTC-GAC
gi|14 : cagcaggctgcgtaatgcaaattaaatctat------TT------T-----G-TC-----T----------A-GTC----TA-----AACTGATAAA-G-TAA---------CTTT-------CATT-GT--ATTATTTCAGAATTTATC-GGGggatggcaaccga
gi|15 : catttgca-T-ATTGA---TGTGATTAGCCTAATCAGCTG--ACC----AAAGGGGA--CAT--ATTGCGCAAAA--------------------AATAATTAAT--------AGTAGCGTATGTGATA-G--TATGTATTTTCTC--AGAT-TTCATTGA--CAA-T-GTGTGT-AACTTA---------------CAT--TT-------TC-CCTGCC--TT--TTC-AG------TCATCATCTCAACAA-TC-----T----------A-GTC----TA-----Aggattacgcccctccacccccccccctgacttaaatcataaataagtgccataatgtggcacttactggtgattgtactcaatgtattgataaaactcatataattcagataatcttactgtcaggcttgattgagggttaacagggctgcaaatcccccccccccacacttttgaaagtgaggg
gi|16 : taataT--ATTAC---AAA--------------------AA-----A-T--------ATTA----------TA----T--------TCTC--AGAT-TTCATTGA--AAA----TGTGT-AATCTAG------TC-AAA--CAT--TTTACCTCATA-CCTGTCT-TT--T-C-AG------TC------T-----G-TA-----T----------A-GTC----TA-----
gi|18 : gacatacatg-ACAA---ATTCTGATTTT--AA-ATGTTA-TGTGG-CCTGATCTGA-T---TTGGCAAAGCTCTT----TATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAATGTTTTttatttaaaaatttcttgtggaacac
gi|19 : AA--CAT--TT-------TA-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----TCAATAAGTCTA-GTC----TA-----AACTAATAA--GCTTATAAGGTTACCTTT-------CAAT-GT--ATTAT
gi|2 : TAGAAAGGTAAAAAA-AC-TTGTACG-TCGTCG-TGCGT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATTC-------------T--------TTT--TT-------TTTTGT-ACAAGA-ATTCCGATTTT--AA--TGTTAATGTGA-TC-GATCTGAATCGATTAGCAAAGCGT-------ATTTAA-CGCAAAAAG----TGTT-ATTGAT-TCAAACATTTTTAAAGATTGAGATGTATGAAT-CCAGCAT--GCTGCTAGTCGGATGGCAGAGA-GTCTA-----TTGA-CGGAAATTTAC-T-CAACTGAT-----------AAT----CA--CTGA-GA--AACAATATTTTCAC-ATAGGTTTAAA-GATTTTT-AAATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAA-GGTG----------------------AAAGGT-ATGTGGGTTTTGT-TCA---GTAT-GTGAAAATGAAC-T-TC---------GCAT------GC-C---A--C-GGGGAAGGAATGAT-TGCCGTT-GACATGCAG-AAT---CGACATCTCTGACT--CTCATCAT-GAATA-TA--AAA-TTTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATC-CTGTACAAGC-TCTA-GACTC-GGATTGACCGACGAATGCAA----------------GGCATAGTGACC-GACTAATGC----AATGCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---TGG-CCAGT-CTT-A-G---ATA-----------GCGA--TG-TCAGA------TCA-GACCGAG---TTT-------TA-GA---TTCAGA-G-GTC-TACT--G---TAG----------------G------AC-----C-----------ATTAACATGC-T-GTTAG---TGTGA-------AATCA-CTGA-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGATGTTCATGCATTAAT-T-GTGTGA-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G--C-----T----------A-GTC----TA-----AGATAATAA--G-TTA---------TCTT-------CAAT-GT--ATTATTTCAAGATTTCCT-TGGACCAAGAAA-ATGACTTTGATCA-TCAATCTTAGATCATTGGACATACATGTATTACAAAAAAATAGAATATTCTCAGA-TTCATTGAAAATG----TGTAA
gi|20 : c-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----T----------A-GTC----TA-----GATTGACAAA-G-TTA---------CTAT-------CAAT-GT--ATTATTTCAAAATGTCAT-GGG
gi|23 : cGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-gga
gi|3 : GTCG-ATGGCAGAAATGTCT------TTGAGCGGAAATTTAC-T------GATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCAC-TTAGGTTTAAA----------------AA--TAT--GGCCGTTTATGACCAATC--GTCCAAAGGCG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTTGCATACGG---GGCC-GGGGAAGGAATGAT-TGCCGTC-GACGTACAG-AAT---CAAAGTCT-----------ATTA---------A--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAACTTTTAAGACTC-GGACNNNNNNNNNNN---NNNNNNNNNNNNNNTGATG---------CCGGA-TAAAGCTGGTAA-GCTATGCAATATGTCAGCATGA-TTG--------CG-AACATGA-AT-TTGTCCTCCCGGGG-CCAGTGCTT-CTGTCTAT------------AC-ATTTGATCAGAACCATTTC--GACTGAGGTATTC-------TAGGA---TTCAGGCGTGTCTTACTAGGG--TAGTGAAGAGCTAAAAGTTG------AC-----C-----------CATAACATGCGTGGTTGATTGTGTGA-------AATCA-CTGGAATCA--------------AT--ATTAC-----A--------------------AA-----AAT--------AGTC----------T--A--T--------TCTC--AGAT-TTCATT-A--AAA-TAGTGTATAAACCTAGCTAGGATCTCAAGGCAT--AT-------TACCCTGTC--TTTCT-C-AGCGTTGCTCAATAA-C-----G-TC-----T----------AGGTC----TGGTAATAACTAATAA--G-TTATAGTTTAC-CTTT-------CAAT-GT--ATTA-TACAAGATTT-CT-GGGACCAAGAAA-TTGAC-TGGATCATTCAA----AA-------GACAT--ATTTAATAC--AAAAATAGA--ATTCTCAGTTTTCATTGAAAATGGGCTTGTAAac
gi|4 : TAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--AAAAAAAAAATCCGGA-------AA-AAGATCC------------TC--------TTT--TT-------TTTGGT-ACAC---ATTCCGATTTT--AA-ATGTTA-TGTGA-CCCGATCTGAA----TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTG-T-TCAAACA-ATTTAAAGATTGAGA-GTATGAA---------------CTAGTT-GATGGCAGAGATGTCT------TTGAATGGAAATTTAC-T-TA-CTGATG----------AAT----CA-GCTGAAGA--AAC--TATTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTCTGACTAA-----TCCAAAAGTGT---------------------GAAGGT-ATGTTTGTT--GT-TTACATTTAT-GTGAAA---GAC-T-TC---------GCATAT---TGCGC---A--C-GGGGAAGGAATGAT-TACCGTCGGACATGCAGCAAT---CAAGTTCTCTGA-CTGCTCATCGT-GAATATTA--AAATTT-AAAAATCTTACGCAATATGAACATTTTCAAATCATTATTGTACAAGC-TCTAAGACTCTGGAT--ACCGACTAA---AAT---------------G---------CC--A-T------------GCTATGCA--ATGTCAGC-T-A-TTG--------CG-AA-ATGC-AT-TTGTCCCT----GG-CCAGT-C-T-A-G---A-A-----------ACGA--TG-TCAGA------TCAGAACTGAGGT-TTC-------TA-GA---TTCAGA-Gcgtactgtagttccaactcgcattt
gi|5 : gaatcgtcacagagttcataaattcatcagtcaatttcctcagagtttaatgcaaacctgtttactcttccgttttcaccgtatttcttacggGCAGAGATCTCTATGTGTTTGAACGGAAATTTAC-T-TA-CTGATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCACTAAAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GTCCGTTTTTGACCAATC--GTTCAAAGGTG----------------------AAAGGT-ATGTTTATT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCA-TT---TGCGC---A--CAGGGGAAGGAATGAT-TGCCGTC-AACATGCAG-AAT---CAAAGTCT-TAG-T-----ATCAT-GAAT--------A-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAT-GCT-AGACTC-AGATTGTCCGAC----------------------------------------TAAAGCTG--AA-GCTATGCA--ATGTCAAC-TGA-TTGCAAACAGCCG-AACATGA-AT-TTGT-CCC---GGG-CCAGT-GTTCA-GTCTATACATATGTAGATACGA--TGATCAGAACC-TTTC--GAATGAGGT-TTCTGCGTG-TA-GA---TTCAGA-ATGTT-TACT--GGTCTAGTGAAGA----------GCTCAAAATATTGAC-----------ATTAACATGC----TTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--G--GAC--ATTAC----AA--------------------AT-----AAT--------AGTA----------T--A--T--------TCTC--AGAT-TTCATTGA--AAA-T-ATATCT-AATCTAG------TC-CAA--CAT--TT-------TA-CTTGTC--TT--T-TAAG------TC------TGTCTAG-TC-----T----------A-GTC----TA-----AACTAACAAAGG-GGA---------CATA-------C-AT-GT--ATTA---CAAAA
gi|6 : aatccagcat-TAAAGCTG--AA-GCTATGCA--ATTTCAGC-TGA-TTT--------TG-AACAAGA-AT-TTGTCC----------------TT---GTCTATA------------CGA--TGATCAAAACC-TTTC--GAATGAGGT-TTCCATATTCTA-AA---TTCAGA-GTGTC-TAAT--GG--TAGGGAAGA----------G------CT-----C-----------A--AA-A-GT-T-GTT-A---T-TAA-------CATCA-CTGG-ATCATTGAAAGG--AGACAT--TTTGC---AAAAAGCAAAAAAAAAAAAAAAAAA-----AATTGGACAAAAGTA----------TATA--T--------TCTCTCAGAT-TTCATTGA--AAA-T-GTGTGT-AACCTTG------TC-CAT--TAA--TT-------TC-CTTGTCT-TT--T-C-AG------TC------T-----G-TCTAGTGT----------A-GTC----TA-----AACTGATAG--G-TTA---------CTTTTGATGTACAGT-GT--ATTATTCCAAAATTTCAT-GGG
gi|7 : acAGA-GTGTC-TACT--GG--TAGTGA---------------------------C-----------ATTAACATGC-T---TGA---TGTGA-------AATCA-CTGA-ATCGTTGAAAGGGGA--CAT--ATTAC---AAA--------------------AA-----A-T--------AGTA----------TA----T--------TCTC--AGAT-TTCATTGA--AAT-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--TTC-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AGATAATAA--GGTTA---------CTTT-------CAAT-GT--ATTATTTCAAGATTTCTTGGGGACCAAG-AA-ATGAC-TTGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAAggatcttcccgacttgagtatgtggcactctctggtgattgtactgacaaactcgaaaaattctgcaaatcttactgacaggcttcattgaaagtaaacgggtcatatggtatgata
gi|7 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgA-------AATCA-TTGG-A-CAT---------A--CATGTATTAC---AAA--------------------AA-----A-T--------AGAA----------TA----T--------TCTC--AGAT-TTCATTGA--AAA-T-GTG--T-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTCA-TT--T-C-AG------TC------T-----G-TC-----TAGTCA-----A-GTC----TA-----AACTAATAAG-G-TTA---------CTTT-------CAAT-GT--ATTATTTTAAAATTCCTT-GGGcctagtccaacattttacctgtcatttcagtctgtctagtcaagtctaaactaataaggttactttcaatgtattattttaaaattccttggggacaccc
gi|8 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgagagtgtctactggtagtgacattaacatgcttgatgtgaaatcactgaatcgttgaaaggggacatattacaaaaaatagtatattctcagatttcattgaaattgtgtgtaacctagtccaacattttacctgtcttttcagtctgtctagtctaagataataaggttactttcaatgtattatttcaagatttcttggggaccaagaaatgacttgatcattcaatctt--AA-AAATGCGG---T--TTACGG---------A-------AA-AA-----------------GT--------TTTGCTA-------TTTTGT-AGAA---ATTCTTATTTT--AA-ATGTTA-TGTGGGCCCGATCTGA-----TCAGCAAAGCGCTTTTAAAATTTAA-C-AAAAG-G----TGTT-ATTGAT-TCAAGCA-CTTTAAAAATTGAGA-GCATGAA----ACCAT--GCC--------GATGGCATAGA------------TGAACGGAAATTTAA-TATA-TTGATGTGATTAGCCTAAT----CA-GCTGAgacaccc
gi|9 : tcctcacatttcatatagaagtttatgatacatattttgccataaagattcagacctgtttactcttccccaccgtatttctaaaaaaaaaAGAGG--AAAAAT-CGTTTT-CGATCGTCT-TG-GTTTAACAATTACGA------GTAAAA---------A-------AA-AAAATCC------------GCAGAAAAGATTCCGTT-------TTTTGC--CAA---ATTCCGATTTT--AA-ATGTTA-TGTGA-CCCGATCTGAAT----CAGCCAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAACA-TTTTAAAGATTGAGA-GTATGAATGC-AGCAT--GCTGCCAGTC-GATGGCAGAGATGTCT------TTGAACGGAAA
blockSeqs : C TA G G C TT C TAG AAAATCCGGA . A GCAGAAAAGATTCCGTT . GA . . A G ATCGA TTAA . G A . . . TT T TCCAG . G G T ATGTGT . AT A TGATTAGCCT GATC T GA A A TA A . A . TG T G TGTTAGGTTACAAAATTGTTTC . TT A C CAT C A A . . T GCA AGGG A A A G C . CTGACTGCT T ATTA T T TT G T A A A T AA T T NNNNNNNNNNNNNNNNNNTGATGCCGGATAAAGCTGGT T AT G A . CAAACAGC . . . C C CCGG . GC CAGTCTATACATATGTAGATA TT A G ACCA AG C G A CATATTC G . C T AG TC T AGAGCTCAAAATATTGAC T T GTGG G TTG TTAGCCT G GA ATTGAAAGGAGA GT GCAA AAGCAAAAAAAAAAAAAAAAAAAATTGGACAAAAGTATATAT TC G TT . A A CTAGGA T GG . TACCTCA C AT TC T A CGTTGC ATCATCTCAACAATCT G AATC GTAAT GCTTATAAGGTTAC TGATGTA . . CC G A . T T T T A A A A T GGCT
blockSeqs : T TA G G . . . T AAAAACGG . A GGGTTTTTTGTACAAA . . . . . . AT . . . . . . . TT . TCCAG . G G T A . C . T . . . A A A . . A . . T C T . . . C . . . . . . T . GGC . G . . . . CTGACTCT T ATA . . T . . . . . . AA . N CGAATGCAAGGCATAGTGACCGACTAATGC . . G . . . . . . C T T . C CTGTCTATA . A G ACC A C G . TGCGTG . . . . . . T AGAGCTAAAAGTTGACC A T TA A . . . A GTTGAAAGGGGA . A AATAATTAATAGTAGCGTATGTGATAGTATGTATTT . . . . . . G . . . . . T . T . . TGTCTCAATAAGTCT . . . GTTATAGTTTAC . . . AT . A . . G T . . . . . T .
blockSeqs : C A A . . . . T A . G GTTTTGCTA . . . . . . A . . . . . . . TT . TGCAG . G G T . . C . . . . . A C T . . A . . T C . . . . C . . . . . . A . A . G . . . . TAGT T A . . T . . . . . . A . T CTAAAATGCCAT . . G . . . . . . C C G . C GTCTATA . A G ACC . C G . . . . . . . . G AGAGCTC T T TG G . . . G GTTGAAAGGA . A AAAATAGTATAAT . . . . . . . . . . . . T . T . . AATAACGTCT . . . AGGGGA . . . CC . . . . T
blockSeqs : . T . . . . . T A . A TCTTTTT . . . . . . T . . . . . . . A . AC . . . T . . C . . . . . A A A . . . . . T C . . . . T . . . . . . T . A . G . . . . . . . . . T . . . . . . A . . CTAAAGCTG . . A . . . . . . C C . . G AGATAG . . G . . A G . . . . . . . . T GACC T T TG G . . . G GTTGAAAGGG . A AAAATAGAATAT . . . . . . . . . . . . A . T . . TGTCTAGTCT . . . GGTTA . . . CA .
blockSeqs : . . . A . . TTTTTT . . . . . . A . . . . . . . C . . . . . T . . T . . . . . . C . . . . . . . . . . . . C . . . . . . . . A . G . . . . G . . . . . . . . . . . AGAAA . . A . . A . . . . . . . . . . C . . T G . . . A AAAGGGGA . A AAAATAGTCTAT . . . . . . . . . . . . . . . . . TGTCTAGTGT . . . AGTAA . . . CA .
blockSeqs : . . . . . . . . . . . . . . T . . . . T . . . . . . . . . . G ATA . A ATAATAGTATAT . . . . . . . . . . . . . . . . . TGTCTAGTCA . . . AGTTA . . . CT .
blockSeqs : . . . . . . . . A . A AAATATTATAT . . . . . . . . . . . . . . . . . TGTCT . . . GGTTA . . . CT .
blockSeqs : . . AAATAGTATAT . . . . . . . . . . . . . . . . . TGTCT . . . GGTTA . . . C .
blockSeqs : . . AAATAGAATAT . . . . . . . . . . . . . . . . . TGTAT . . . GTTA . . .
blockSeqs : . . . . . . . . . TGTCT . . . GTTA . . .
blockSeqs : . . . . . . TGTCT . . .
blockSeqs : . TGCT . . .
blockSeqCons : TA T***** GGTTTTTTG*************************** *** ** A**** **** TT TCCAG* ** ** ** C** ********* *** CGT******* T* A***** T* N*** NGTCTATA************** *** AGAGCTAAAGTC*************************** TG** GTTGAAAGGGA*** A*** ** ** ** TGTCAGTCT*********************** GGTTA*********** **
originalCons : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---T--ATAAAA---------A-------AA-AAAATCC------------GT--------TTT--TT-------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAAT---TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAAT-C-AGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCTGA-T--CTCATCAT-GAATA-TA--AAA-TT-AAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---GGG-CCAGT-CTT-A-GTCTATA-----------ACGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGA----------G------AC-----C-----------ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG--A--CAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TC------T-----G-TC-----T----------A-GTC----TA-----AACTAATAA--G-TTA---------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
finalCons : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGGT-----ATAAAA---------A-------AA-AAAATCCGGTTTTTTG---------------------------TTTTGT-ACAA---ATTCCGATTTT--AA-ATGTTA-TGTGG-CCCGATCTGAA----TCAGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAATCCAG-CAT--GCTGCTAGTCGGATGGCAGAGATGTCT------TTGAACGGAAATTTAC-T-CA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCGTT--GT-TCA---GTAT-GTGAAA-TGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCGT-------CATCAT-GAATA-----AAA-TT-AAAAATCT-AC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCCN---GG-CCAGT-CTTNGTCTATA--------------CGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAGAGCTAAAGTC---------------------------ATTAACATGCTG--TTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGGGA---CAT--ATTACA---AA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AG------TCTGTCAGTCT-----------------------A-GTC----TA-----AACTAATAAGGTTA-----------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACTCTCTGGTGATTGTACTGACAAAATCTCAAGATTCTGCAGAATCATTGAGGGGAAACAGGTCTGTTAAATGATAGGTGGTTTCAGGAGACTCAGTGGTCACATCCAAGGAAGACAGAACATCAGAGAGGGTGGCAGTGATGGTTCCTAAGATCCTTTTATCTGGAGAACTGAAGGCGACAGTGAATGGCAAACATAAAGCACTGGATGGATTGGTGGCAAAACCAACATCATTGGTCCTCTGCTTTAATCTTGAAATTAC
Unaligned ( gi|17 ): ACTGGTGAATGTAATGACAAAAGTCTAAAAATTCAGATAATCTTACAGACTGGCTTGATTGAGGGTTAACAGGTCAGCAAATACCCCCTACCACTTTTGAAATGGGGG
Unaligned ( gi|21 ): AAGTGCCATATTGTGGCACTTACAGGTGATTGTACCCAATGTATTGATAAAACTCATATAATTCAAAGAA
Unaligned ( gi|22 ): TGACTGGTCAGAGTTCATACACACTCTATCCTGAACGTTTCCTCTGAACAGCCTATGTTC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 22222222 2222222 111111111111111111111111111111111111111111111111 111 1111 1111 1111 11 11 11 1 3333333333 1111 11 11 111 6666666666666666666666 111 222222222 111111 222222 111 777777777777777777777777777777777 1 333333333333333333333333333333333333333333333333333 22222222 1 1111 5555555555555555555555 1111 11 4444444 111 88888888888888888888888 2222 111 1111111 22222222222 1111 5555555555555555555555555555555555555555555555555555555555555555555 111111 1111111 22 1 4444444444444444 11111111 22222222 1111111 1 1 22 2222
lowQualScore : 3 11 0 3 0 8 11 8 00000000 6 1111111 777777777777777777777777777777777777777777777777 6 777 5 77 5 5 5 2222 2222 5 5 5 2222 5 5 99 6 00 4 77 00 0 3 9 5 5 99 5 0000000000 2222 5 99 7 1 44 6 6 3 99 55 7 0 000 5555555555555555555555 6 99 6 1 111 6 6 6 6 666666666 333333 111111 6 1 6 6 8 444 666666666666666666666666666666666 88 8 8 8 8 8 8 0 8 2 111111111111111111111111111111111111111111111111111 6 99 1 6 6 44444444 6 6 6 0 1 5555 6 3333333333333333333333 6 6 99 7 1 0000 55 6 1 6 0000000 6 111 5 6 99 99 3 22222222222222222222222 3 1111 1 000 0 6666666 5 55 22222222222 55 2222 3333333333333333333333333333333333333333333333333333333333333333333 55 4 99 4 4 0 4 0 555555 4 55 55 1111111 3 11 44 0 3 3 7777 3 0000000000000000 77 77777 0 33333333 3 55 33333333 1111111 3 55 22 4 3 0 0 1 7 7 7 7 00 7 7 8888
lowQualScore : . .. . . . . .. . ........ . ....... ................................................ . ... . .. . . . .... .... . . . .... . . .. . .. . .. .. . . . . . .. . .......... .... . .. . . .. . . . .. .. . . ... ...................... . .. . . ... . . . . ......... ...... ...... . . . . . ... ................................. .. . . . . . . . . . ................................................... . .. . . . ........ . . . . . .... . ...................... . . .. . . .... .. . . . ....... . ... . . .. .. . ....................... . .... . ... . ....... . .. ........... .. .... ................................................................... .. . .. . . . . . ...... . .. .. ....... . .. .. . . . .... . ................ .. ..... . ........ . .. ........ ....... . .. .. . . . . . . . . . .. . . ....
lowQualScore : 2 66 8 2 0 0 00 0 66666666 7 7777777 000000000000000000000000000000000000000000000000 7 999 7 99 7 7 7 1111 1111 7 7 7 1111 7 7 33 7 11 3 99 11 1 9 4 0 0 22 0 7777777777 1111 7 22 3 0 55 7 7 2 22 88 3 3 222 8888888888888888888888 7 22 7 0 777 7 7 7 7 777777777 333333 555555 7 0 7 7 0 000 888888888888888888888888888888888 88 0 0 0 0 0 0 6 0 8 888888888888888888888888888888888888888888888888888 7 22 0 7 7 22222222 7 7 7 8 0 0000 7 2222222222222222222222 7 7 22 3 0 7777 88 7 0 7 8888888 7 777 7 7 22 22 2 88888888888888888888888 2 7777 7 000 7 2222222 0 22 11111111111 55 7777 3333333333333333333333333333333333333333333333333333333333333333333 55 0 55 0 0 7 0 9 555555 0 00 00 8888888 3 22 66 0 3 3 1111 3 5555555555555555 33 77777 5 22222222 6 66 22222222 8888888 6 00 88 4 2 0 0 0 3 3 3 3 77 3 3 3333
consensus : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---TA--TAAAAAAA-AA-------AATCCG--------GA---------TTT-----------TTTG---T------TTTG-TACAA---ATTCCGA-TTTTAA--ATGTTA-TGT-GGCCCGATCTGAA-TC----AGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAATCCAGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT-TTGAACGGAAATTTAC-T-CA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCG--TTGT-TCA---GTAT-GTG-AAATGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTCTGACT--TCATCATGAAT-----AT-AAAATTTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---GGG-CCAGT-CTTCAGTCT------------A-TA-CGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAG-AGCT--AAAGT-----C---ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG-G-ACAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AGT-C----TG-T---CT-----A-----GTCTA--GTCTA-----AACTA--------AT-AA-GGTTA--------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
Reference ( family-2017 ) : NTAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---TA--TAAAAAAA-AA-------AATCCG--------G----------TTT-----------TTTG---T------TTTG-TACAA---ATTCCGA-TTTTAA--ATGTTA-TGT-GGCCCGATCTGAA-TC----AGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTTTAAAGATTGAGA-GTATGAATCCAGCAT--GCTGCTAGTCGGATGGCAGAGATGTCT-TTGAACGGAAATTTAC-T-CA-CTGATG----------AAT----CA-GCTGAAGA--AACAATNTTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCCAAAGGTG----------------------AAAGGT-ATGTTCG--TTGT-TCA---GTAT-GTG-AAATGAAC-T-TC---------GCATTT---TGCGC---G--C-GGGGAAGGAATGAT-TGCCGTC-GACATGCAG-AAT---CAAAGTCTC-G-----TCATCATGAAT-----A--AAA--TTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAC-TCTAAGACTC-GGATTGACCGACTAA---AA----------------G---------CC-GA-TAAAGCTG--AA-GCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---NGG-CCAGT-CTT-NGTCT------------A-TA-CGA--TGATCAGAACC-TTTC--GACTGAGGT-TTC-------TA-GA---TTCAGA-GTGTC-TACT--GG--TAGTGAAG-AGCT--AAAGT-----C---ATTAACATGC-T-GTTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG-G-ACAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AGT-C----TG-T---C------A-----GTCTA--GTCTA-----AACTA--------AT-AA-GGTTA--------CTTT-------CAAT-GT--ATTATTTCAAAATTTCCT-GGGACCAAGAAA-ATGAC-TNGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAA
gi|1 : AGAAAGCCAAAATGTACGTTTTACGGTCGTCGGTA-GT--AA-TATTACGAGGTTA--TAAAAAAACAA-------AATCCT--------GAAGAAA----TTCGG---------TTTGAT-T------TTTGTTACAACACATTCCGATTTTTAAATATGTTG-TGT-GGCCCGATCTGAATTC----AGCAAAGCGCTT----GATTTAACC-CAAAA-GTCTCTGTTAATTGATCTCACGCA--TTTAACGATCGAGA-GTATGACCTTA-CATCAGCTATTAGTC-GATGACAAGGA-ATCA-TTTAACGGAAA-TTACTT-TA-CTGCTG----------AA-----GA-GCTGAA-A--AAC-ATTTTTGCAC-TTAGGTTTAAA-GATTCTTAATATAGAGAATTATG-GGCCG-TTTTGACTAATTGGGTCCAAAG--A----------------------AAAGGTCATG-TCG--TAGT-C-----GTAT-GTG-AAATGAAC-TGTTACATGTAAGGCATTT---TGCGC---A--T-TG----GGAATGTT-AGCTG-C-GACATGCAA-AATTTACAAAGTCTC-A-----CCAT-A-GAATTTAGGA--AAA---TAAAGATC--AC-CCATA-GAAC-TTTCA-AATCATT-TTGTACAAAC-TCTAAGGCTC-GGATTGACCGA-TAA---AA----------------G---------CT-GA-----------AG-GCTATGCA--ATGTCA-C-TGACTTG--------CGCAACATGACATCTTGTACCC---AGGCCCAGT-GTTCAGTCT------------ATTA-AGA--TGATCA-AACC-TTTC--GA-TAGGAT-TTC-------TA-TACCTTCCATA-GTGTC-TACT--GG--TAGTGAAGAAACTAAAAAGT-----TTGAATTAACAAGC-C--TTAA---TTTGA-------AATCA-CTGG-ATCG--GAAA---G-ACAT--ATTAC----CA--------------------AA-----AAT--------AGTAAAGTATTC--TA-AATT--------TCTC--AGAT-TTCATTGAC-AAATT-GTGTGT-AACATCG------TC-CAA--CATTATT-------CA-CCATTCA-TT--T-C-A-T-C----TG-T-----------------TCTA--GGCTA-----AACTG--------AT-AATGTTTAACT-----CTTT-------CAATCATTGATTATTTCAAAATTCTTA-GGGACTATCAAATATGAC-TGGA
gi|10 : agacctgtattaactcttccgtttcattcgtattgtttttaccaggttcT--ATTAC---AAA--------------------AA-----AAT--------AGAA----------TA----T--------TCTC--AGAT-T-CATTGA--AAA-T-GTGTAA-AACCTAGG-----TA-CAA--CAT--TT-------TA-CCTGTCATTC--T-C-AGT------TG-T---CT-----A-----GTC-A--ATCTA-----AA-TA--------AT-AA-GGTTA--------CTTT-------CA-T-GT--ATTATTTTAAAATTTCCT-GGGcttgctttaaaggggaacttagcacaaaaaaatcagtt
gi|11 : gacatacatgTAGAAAGGCAAAAAATACGTTTTATGGTTGTCGGTG-GT--AA-AATTACGG---TAGATAAAAAAA-AACGGAAAAAATTTG--------GG---------TTT-----------TTTG---TACAAATTTNG-TACAA---ATTCCGA-TTTTAA--ATGTTA-TGT-GACTCGATCTGAA-TC----AGCAAAGCACTT----GGTTTAA-A-CAAAA-G----TGTT-ATTGAT-TCAAGCATTTT--AAAATTGGGA-GTTTGAATCCAGCAT--GCTGCTAGTCGgacacccccctccctccgataaaatatttgtggtattagtgagccactcgctggttattgtactgacaaactctaaaattcaagaaaatcttactggcagcttcgttaggtaaacag
gi|13 : atacagacctgtttactcgtccgttttcaccgtatttcttacggCGAAGATTTA--T-CA-CTGATAT---------AATGATCCATGCTGAAGAGAAACAATATTTTCAC--TAGGTTTAAAAGATTCTT-ATAT-GAAA--TACTGGGCCG-TTTTGACAAATG--TTTCAAAGGTATGTTAGGTTACAAAATTGTTTCAAGAGT-ATGTTCG--TTATATCA---GTATCGTG-AAATGAACAT-TC---------ATATTT---GTCGCAGGG--C-GGAGAGGAAATGATATG-CGTC-GAC
gi|14 : cagcaggctgcgtaatgcaaattaaatctat-----GTCTA--GTCTA-----AACTG--------AT-AA-AGTAA--------CTTT-------CATT-GT--ATTATTTCAGAATTTATC-GGGggatggcaaccga
gi|15 : catttgcattt-T-ATTGA---TGTGATTAGCCTAATCAGCTG--ACCA---AAGGG-G-ACAT--ATTGCGCAAAA--------------------AATAATTAAT--------AGTAGCGTATGTGATA-G--TATGTATTTTCTC--AGAT-TTCATTGA--CAA-T-GTGTGT-AACTT-------------A--CAT--TT-------TC-CCTGCCT-TT--T-C-AGT-CATCATC-TCAAC------A-----ATCTA--GTCTA-----Aggattacgcccctccacccccccccctgacttaaatcataaataagtgccataatgtggcacttactggtgattgtactcaatgtattgataaaactcatataattcagataatcttactgtcaggcttgattgagggttaacagggctgcaaatcccccccccccacacttttgaaagtgaggg
gi|16 : taataT--ATTAC---AAA--------------------AA-----A-T--------ATTA----------TA----T--------TCTC--AGAT-TTCATTGA--AAA----TGTGT-AATCTAG------TC-AAA--CAT--TTTACCTCATA-CCTGTCT-TT--T-C-AGT-C----TG-TA--T------A-----GTCTATTATTTA-----AA
gi|18 : gacatacatgACAA---ATTCTGA-TTTTAA--ATGTTA-TGT-GGCCTGATCTGAT-TT----GGCAAAGCTCTT----TATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAATGTTTTaatttcttgtggaacac
gi|19 : AA--CAT--TT-------TA-CCTGTC--TT--TTC-AGT-C----TG-T---CTCAATAA-----GTCTA--GTCTA-----AACTAATAAGCTTAT-AA-GGTTAC-------CTTT-------CAAT-GT--ATTAT
gi|2 : TAGAAAGGTAAAAAA-AC-TTGTACG-TCGTCG-TGCGT--AA-AATTACGG---TA--TAAAAAAA-AA-------AATTC--------------------TTT-----------TTT----T------TTTG-TACAAGA-ATTCCGA-TTTTAA---TGTTAATGT-GATC-GATCTGAA-TCGATTAGCAAAGCGT-------ATTTAA-CGCAAAAAG----TGTT-ATTGAT-TCAAACATTTTTAAAGATTGAGATGTATGAATCCAGCAT--GCTGCTAGTCGGATGGCAGAGA-GTCTATTGA-CGGAAATTTAC-T-CAACTGAT-----------AAT----CA--CTGA-GA--AACAATATTTTCAC-ATAGGTTTAAA-GATTTTT-AAATAGAAA--TAT--GGCCGTTTTTGACTAATC--GTCC-AAGGTG----------------------AAAGGT-ATGTGGGTTTTGT-TCA---GTAT-GTGAAAATGAAC-T-TC---------GCA------TGC-C---A--C-GGGGAAGGAATGAT-TGCCGTT-GACATGCAG-AAT---CGACATCTCTGACTC-TCATCATGAAT-----AT-AAAATTTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATC-CTGTACAAGC-TCT-AGACTC-GGATTGACCGACGAATGCAA----------------GGCATAGTGACC-GACTAATGC----AATGCTATGCA--ATGTCAGC-TGA-TTG--------CG-AACATGA-AT-TTGTCCCC---TGG-CCAGT-CTT-AG---------------A-TAGCGA--TG-TCAGA------TCA-GACCGAG---TTT-------TA-GA---TTCAGA-G-GTC-TACT---G--TAG-GA-------------C-----C---ATTAACATGC-T-GTTAG---TGTGA-------AATCA-CTGA-ATCGTTGAAA-G-G-ACAT--ATTAC---AAA--------------------AA-----AAT--------AGTA----------TA-A--T--------TCTC--AGATGTTCATGCATTAAT-T-GTGTGA-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--T-C-AGT-C----TG--------------------CTA--GTCTA-----AGATA--------AT-AA--GTTA--------TCTT-------CAAT-GT--ATTATTTCAAGATTTCCT-TGGACCAAGAAA-ATGACTTTGATCA-TCAATCTTAGATCATTGGACATACATGTATTACAAAAAAATAGAATATTCTCAGA-TTCATTGAAAATG----TGTAA
gi|20 : c-CCTGTC--TT--TTC-AGT-C----TG-T---C---------------TA--GTCTA-----GATTG--------AC-AA-AGTTA--------CTAT-------CAAT-GT--ATTATTTCAAAATGTCAT-GGG
gi|23 : cGGCAGAGATGTCT-TTGAACGGAAATTTAC-T-CA-gga
gi|3 : GTCG-ATGGCAGAAATGTCT-TTGAGCGGAAATTTAC-T------GATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCAC-TTAGGTTTAAA----------------AA--TAT--GGCCGTTTATGACCAATC--GTCCAAAGGCG----------------------AAAGGT-ATGTTCG--TTGT-TCA---GTAT-GTG-AAATGAAC-T-TC---------GCATTTGCATACGG---GGCC-GGGGAAGGAATGAT-TGCCGTC-GACGTACAG-AAT---CAAAGTCT----------ATTA----------A--AAA--TTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAACTTTTAAGACTC-GGACNNNNNNNNNNN---NNNNNNNNNNNNNNTGATG---------CCGGA-TAAAGCTGGTAA-GCTATGCAATATGTCAGCATGA-TTG--------CG-AACATGA-AT-TTGTCCTCCCGGGG-CCAGTGCTTCTGTCT------------A-TA-C-ATTTGATCAGAACCATTTC--GACTGAGGTATTC-------TAGGA---TTCAGGCGTGTCTTACTAGGG--TAGTGAAG-AGCTA-AAAGTTGACCC---A-TAACATGCGTGGTTGATTGTGTGA-------AATCA-CTGGAATCA-------------AT--ATTAC-----A--------------------AA-----AAT--------AGTC----------T--A--T--------TCTC--AGAT-TTCATT-A--AAA-TAGTGTATAAACCTAGCTAGGATCTCAAGGCAT--AT-------TACCCTGTC--TTTCT-C-AGCGT----TGCT---C------AATAACGTCTAG-GTCTGGTAATAACTA--------AT-AA--GTTATAGTTTACCTTT-------CAAT-GT--ATTA-TACAAGATTT-CT-GGGACCAAGAAA-TTGAC-TGGATCATTCAA----AA-------GACAT--ATTTAATAC--AAAAATAGA--ATTCTCAGTTTTCATTGAAAATGGGCTTGTAAac
gi|4 : TAGAAAGGCAAAAAATACGTTTTACGGTCGTCGGTG-GT--AA-AATTACGG---TA-----AAAAA-AA-------AATCCG--------GAAAAAGATCCTCT-----------TTTT---T------TTGG-TACAC---ATTCCGA-TTTTAA--ATGTTA-TGT-GACCCGATCTGAA-TC----AGCAAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTG-T-TCAAACA-ATTTAAAGATTGAGA-GTATGAA--------------CTAGTT-GATGGCAGAGATGTCT-TTGAATGGAAATTTAC-T-TA-CTGATG----------AAT----CA-GCTGAAGA--AAC--TATTTTCAC-ATAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GGCCGTTTCTGACTAA-----TCCAAAAGTGT---------------------GAAGGT-ATGTTTG--TTGT-TTACATTTAT-GTG-AAA--GAC-T-TC---------GCATAT---TGCGC---A--C-GGGGAAGGAATGAT-TACCGTCGGACATGCAGCAAT---CAAGTTCTCTGACTGCTCATCGTGAAT-----ATTAAAATTTAAAAATCTTACGCAATATGAACATTTTCAAATCATTATTGTACAAGC-TCTAAGACTCTGGAT--ACCGACTAA---AAT---------------G---------CC--A-T------------GCTATGCA--ATGTCAGC-T-A-TTG--------CG-AA-ATGC-AT-TTGT-CCC---TGG-CCAGT-C-T-AG---------------A-AA-CGA--TG-TCAGA------TCAGAACTGAGGT-TTC-------TA-GA---TTCAGA-Gcgtactgtagttccaactcgcattt
gi|5 : gaatcgtcacagagttcataaattcatcagtcaatttcctcagagtttaatgcaaacctgtttactcttccgttttcaccgtatttcttacggAATCCAGCAT--GC----AG--AGATCTC---TATGTGT-TTGAACGGAAATTTAC-T-TA-CTGATG----------AAT----CA-GCTGAAGA--AACAATCTTTTCACTAAAGGTTTAAA-GATTCTT-ATATAGAAA--TAT--GTCCGTTTTTGACCAATC--GTTCAAAGGTG----------------------AAAGGT-ATGTTTA--TTGT-TCA---GTAT-GTG-AAATGAAC-T-TC---------GCA-TT---TGCGC---A--CAGGGGAAGGAATGAT-TGCCGTC-AACATGCAG-AAT---CAAAGTCTT-A-----GTATCATGAAT----------A--TTAAAAATC-TAC-CAATA-GAAC-TTTTC-AATCATT-TTGTACAAAT-GCT-AGACTC-AGATTGTCCGAC----------------------------------------TAAAGCTG--AA-GCTATGCA--ATGTCAAC-TGA-TTGCAAACAGCCG-AACATGA-AT-TTGT-CCC---GGG-CCAGT-GTTCAGTCTATACATATGTAGA-TA-CGA--TGATCAGAACC-TTTC--GAATGAGGT-TTCTGCGTG-TA-GA---TTCAGA-ATGTT-TACT--GGTCTAGTGAAG-AGCTC-AAAATATTGAC---ATTAACATGC----TTGA---TGTGA-------AATCA-CTGG-ATCGTTGAAAGG-G-G-AC--ATTAC----AA--------------------AT-----AAT--------AGTA----------T--A--T--------TCTC--AGAT-TTCATTGA--AAA-T-ATATCT-AATCTAG------TC-CAA--CAT--TT-------TA-CTTGTC--TT--T-TAAGT-C----TG-T---CT-----A-----GTCTA--GTCTA-----AACTA--------ACAAA-GGGGA--------CATA-------C-AT-GT--ATTA---CAAAA
gi|6 : -TAAAGCTG--AA-GCTATGCA--ATTTCAGC-TGA-TTT--------TG-AACAAGA-AT-TTGTCC-----------------T-TGTCT------------A-TA-CGA--TGATCAAAACC-TTTC--GAATGAGGT-TTCCATATTCTA-AA---TTCAGA-GTGTC-TAAT--GG--TAGGGAAG-AGCTCAAAAGT--------------------T-GTT-A---T-TAA-------CATCA-CTGG-ATCATTGAAAGGAG-ACAT--TTTGC---AAAAAGCAAAAAAAAAAAAAAAAAA-----AATTGGACAAAAGTA----------TATA--T--------TCTCTCAGAT-TTCATTGA--AAA-T-GTGTGT-AACCTTG------TC-CAT--TAA--TT-------TC-CTTGTCT-TT--T-C-AGT-C----TG-T---CT-----A-----GTGTA--GTCTA-----AACTG--------AT--A-GGTTA--------CTTTTGATGTACAGT-GT--ATTATTCCAAAATTTCAT-GGG
gi|7 : acAGA-GTGTC-TACT--GG--TAGTGA-------------------C---ATTAACATGC-T---TGA---TGTGA-------AATCA-CTGA-ATCGTTGAAAGG-GGACAT--ATTAC---AAA--------------------AA-----A-T--------AGTA----------TA----T--------TCTC--AGAT-TTCATTGA--AAT-T-GTGTGT-AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTC--TT--TTC-AGT-C----TG-T---C---------------TA--GTCTA-----AGATA--------AT-AA-GGTTA--------CTTT-------CAAT-GT--ATTATTTCAAGATTTCTTGGGGACCAAG-AA-ATGAC-TTGATCATTCAATCTTAAATCATTGGACATACATGTATTAC-AAAAAATAGAATATTCTCAGATTTCATTGAAAATG----TGTAAggatcttcccgacttgagtatgtggcactctctggtgattgtactgacaaactcgaaaaattctgcaaatcttactgacaggcttcattgaaagtaaacgggtcatatggtatgata
gi|7 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgA-------AATCA-TTGG-A-CAT----------ACATGTATTAC---AAA--------------------AA-----A-T--------AGAA----------TA----T--------TCTC--AGAT-TTCATTGA--AAA-T-GTGT---AACCTAG------TC-CAA--CAT--TT-------TA-CCTGTCA-TT--T-C-AGT-C----TG-T---CT-----A-----GTCAA--GTCTA-----AACTA--------AT-AA-GGTTA--------CTTT-------CAAT-GT--ATTATTTTAAAATTCCTT-GGGcctagtccaacattttacctgtcatttcagtctgtctagtcaagtctaaactaataaggttactttcaatgtattattttaaaattccttggggacaccc
gi|8 : gagatatatgttctagacaggaatccgacgtgtcctatctatgatctctcgagagtgtctactggtagtgacattaacatgcttgatgtgaaatcactgaatcgttgaaaggggacatattacaaaaaatagtatattctcagatttcattgaaattgtgtgtaacctagtccaacattttacctgtcttttcagtctgtctagtctaagataataaggttactttcaatgtattatttcaagatttcttggggaccaagaaatgacttgatcattcaatcttAAAAAAA-AA-------AATGCG--------G----------TTTACGGAAAAAGTTTTGCTAT------TTTG-TAGAA---ATTCTTA-TTTTAA--ATGTTA-TGTGGGCCCGATCTG-A-TC----AGCAAAGCGCTTTTAAAATTTAA-C-AAAAG-G----TGTT-ATTGAT-TCAAGCA-CTTTAAAAATTGAGA-GCATGAA---ACCAT--GCC--------GATGGCATAGA-------TGAACGGAAATTTAA-TATA-TTGATGTGATTAGCCTAAT----CA-GCTGAgacaccc
gi|9 : tcctcacatttcatatagaagtttatgatacatattttgccataaagattcagacctgtttactcttccccaccgtatttctaaaAGAGG--AAAAAT-CGTTTT-CGATCGTCT-TG-GTTTAACAATTACGA----G--TAAAAAAA-AA-------AATCCGCAGAAAAGA----------TTC-----------CGTT---T------TTTG-C-CAA---ATTCCGA-TTTTAA--ATGTTA-TGT-GACCCGATCTGAA-TC----AGCCAAGCGCTT----GATTTAA-C-CAAAA-G----TGTT-ATTGAT-TCAAACA-TTTTAAAGATTGAGA-GTATGAATGCAGCAT--GCTGCCAGTC-GATGGCAGAGATGTCT-TTGAACGGAAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CACTCTCTGGTGATTGTACTGACAAAATCTCAAGATTCTGCAGAATCATTGAGGGGAAACAGGTCTGTTAAATGATAGGTGGTTTCAGGAGACTCAGTGGTCACATCCAAGGAAGACAGAACATCAGAGAGGGTGGCAGTGATGGTTCCTAAGATCCTTTTATCTGGAGAACTGAAGGCGACAGTGAATGGCAAACATAAAGCACTGGATGGATTGGTGGCAAAACCAACATCATTGGTCCTCTGCTTTAATCTTGAAATTAC
Unaligned ( gi|17 ): ACTGGTGAATGTAATGACAAAAGTCTAAAAATTCAGATAATCTTACAGACTGGCTTGATTGAGGGTTAACAGGTCAGCAAATACCCCCTACCACTTTTGAAATGGGGG
Unaligned ( gi|21 ): AAGTGCCATATTGTGGCACTTACAGGTGATTGTACCCAATGTATTGATAAAACTCATATAATTCAAAGAA
Unaligned ( gi|22 ): TGACTGGTCAGAGTTCATACACACTCTATCCTGAACGTTTCCTCTGAACAGCCTATGTTC