lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 2 222 11 555555555555 333333333333 22 3333333333333333 1 111 44444444444444444 333 2 1111 22222 3333333333333333333 11 2222222222 222 555555555555555 1 1111 44444444444444444444 11 222222 1111 33333333 1111 33333333 33333333 11111111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 222222 22 222222 22222222222 11111111 333333333333 11 22222222222222222222 333333333333 222222222222 333333333333333 3333333333333333 11 2222222222 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 222222222 2222222222 2222222 3333333333333 3333333333333333 222 555555555555555555555555555 2222 22 222 11 11111111111111111 111 222222 1 333333333333 5555555 2 1 3333333333 11 111 555555555 33 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 6 555 55 4 4 55 11 0 4 4 888888888888 66 0 5 777 555555555555 3 44 55555 7777 3 55 3 11 3 5555555555555555 0 4 5 4 3 333 99999999999999999 555 666 3 3 1111 3 999999 3 88888 9 44 5 55555 1111111111111111111 11 3 6 555 8888 2 66 8888888888 4 111 4 33 88888888 2 333333333333333 222 2 666 3 999999 2 2222 55 2 2 2 33333333333333333333 1 2 11 444 55 666666 4444 5555 33 777 22222222 2 4 3333 2 11111111 2 2 66666666 5 5 33333333 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5 9 1 5 2 888888 66666 2 33 33 2 2 2 666666 2 2 1 4444 2 2 22222222222 8888 2 2 4 33 66 22222222 5 2 2 888888888888 66 6 2 2 55 22222222222222222222 2 2 5 2 2 111111111111 2 88 2 4444 22 99999999 4 888888888888 66 2 2 2 2 77 000000000000000 2 666 33 2 2 2 88 2 4444444444444444 666 88 44 2 5555555555 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 333 000000000 2 22 0000000000 5 2222222 66 33 2 33 5 2 3333333333333 3 3 3 9 77 3 7 1111111111111111 44 3 000 3 000000000000000000000000000 4 55 0000 666 3 44 55 3 222 55 4 0 44 99 88888888888888888 4 5 66 77 5 000 5 1 333333 3 666666666666 7 5555555 4 3 7777777777 88 7 888 222222222 4 55 6 77 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 6 6
lowQualScore : . ... .. . . .. .. . . . ............ .. . . ... ............ . .. ..... .... . .. . .. . ................ . . . . . ... ................. ... ... . . .... . ...... . ..... . .. . ..... ................... .. . . ... .... . .. .......... . ... . .. ........ . ............... ... . ... . ...... . .... .. . . . .................... . . .. ... .. ...... .... .... .. ... ........ . . .... . ........ . . ........ . . ........ . ............................................................................................................. . . . . . ...... ..... . .. .. . . . ...... . . . .... . . ........... .... . . . .. .. ........ . . . ............ .. . . . .. .................... . . . . . ............ . .. . .... .. ........ . ............ .. . . . . .. ............... . ... .. . . . .. . ................ ... .. .. . .......... ........................................................................................................................................ . ... ......... . .. .......... . ....... .. .. . .. . . ............. . . . . .. . . ................ .. . ... . ........................... . .. .... ... . .. .. . ... .. . . .. .. ................. . . .. .. . ... . . ...... . ............ . ....... . . .......... .. . ... ......... . .. . .. ...................................................................................... . . .
lowQualScore : 7 555 55 0 0 55 22 7 0 0 888888888888 88 8 4 000 111111111111 6 66 22222 7777 6 00 5 22 3 1111111111111111 5 8 5 3 6 222 66666666666666666 555 333 6 3 7777 3 666666 3 33333 2 22 2 77777 3333333333333333333 55 1 2 444 9999 9 66 5555555555 4 444 4 11 11111111 7 555555555555555 999 5 999 6 111111 5 2222 99 5 5 5 55555555555555555555 6 4 55 111 66 555555 7777 7777 77 333 11111111 5 3 3333 7 77777777 7 7 11111111 7 7 33333333 7 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5 7 3 5 9 111111 88888 7 77 99 7 7 5 888888 7 5 1 7777 7 7 55555555555 3333 7 7 6 77 33 99999999 1 7 7 111111111111 88 0 4 3 66 77777777777777777777 4 4 0 5 7 888888888888 0 22 0 2222 88 22222222 4 999999999999 11 2 2 2 2 88 777777777777777 2 111 11 2 2 2 33 2 3333333333333333 111 11 55 7 8888888888 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 111 999999999 7 99 7777777777 7 2222222 88 99 9 99 7 4 8888888888888 1 1 1 2 33 1 8 0000000000000000 66 5 555 6 666666666666666666666666666 6 55 3333 000 6 44 99 2 222 55 0 3 00 55 44444444444444444 4 0 99 99 7 777 6 0 000000 3 333333333333 3 0000000 7 3 7777777777 33 3 000 000000000 0 00 0 00 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0
consensus : GTCAATCTAG--GC--CAT-TT-T--TT-GGGCCTAA-CCT-CAAACT-AATTTGC----AACAGAAATGATTT---ATTGATTA-TTCAT-T-G--CAAGAAAA-TA--TA-TAC-AAA----CAACA-TA--ATAAAAAT-C-GGC--TGCTG--T--ATCCTCGATGGGAAAATGGGAAATTTTGGGGTTAAATG-ATG--TTTTT--TT----A-AT--A--AAAATC--GCCAAAAA--CTGG-AAATTG----AAG-A------AAAAA-T-----ATAATTTAT--GTANCCTACAATTG--AAAACCAA--T--CTCAAA-T-TTTT-AAA--TTTCAAC-C-T---TT----AA-A-CGAT-TA-A--G--CAT-AAT--A-A--A--------ATC-G---GCTGCT-G----T-A-TCT-CG---ATGGGAAAATGGGAATTTTGGGG--T--AAAA-TG-AT-G--TT-TT-T-T------A-N---T--AT-G-AAAATCGC-C-AAA---AAACTGGA-A----ATTG----AAGAA----AA--AA---TATAATTTA-A----TG-TANCC---TAC-A--N-T---A-AAACCAGTC-CGTC-A-A-TTTT-AAA--------TT-TC---------A----------A----------A-TC-----T------------A--CA-T--ANT-------AAAAA-------TCG----G-CTGC-TGTA--TCCTCGATGGGAAAATGGGAATTT-TGG-G--TTAAA--TGATGGT--T-TTT-T-TTAA-ATA-AN---A-AA-ATCGCC--A-AAAA-CTGG-AAA----------TTG----AA-G-AAAAA--A--TATAATT----TA--TGTANCCTAC-AA-TGAAAA--CAAGCC----TCAT-ATTT-TTAAA--TT--T----C-------A--NTC-T-TTAA-A-TG-A--AAACA--A--T-A--AT-A----A--AA--------ATC-GGCTG--C--T-GTA--T--C-TCG-A-T-GGGAAAATGGGAATTTTTNGGG-TT---AAA--TG-A-T-G--TTTT-TT-----AATNC-A----A---AAATCGCC-AAAAAACTGG-AA-ATT----G-AAGAAA-------AAATATA-AATT---TAGTT---GTAACCTTACAAT-----A----A---CA----AGC---C----TCA-----TAT---TT-TT-AA-A---T-T----C----A--CC-----T---T------AA-A-C-GATNA-AC--CAT-AA-TAA--------AAA-TCGGCTG--C-T-GTA--T--CT-C--GA-TGGGAAA--AT-GGG--A--TTTT-G-G-G-TTAAA--TGA-TGTTTTTTT---T--AA---T-TN-AAAA--TCG--CC-AAAA-CT----G--GAA-A---TTG-GA---AGAAAAA--ATATAA---TT--CATG-TANCCTACAATTGAAAACCAGTCC-TC--A-ATTTTTA-AA--TTTCA---A----CCTTT----AA-AT-GA--TC--A-A-T-TAATGTTTT-TAA-CCAG-CAGA----ATTT-CGTTTCCTGGGC-G---TAATTTTTGGG-GGGGGG---TC-TT--TTTTT--TAATAAAAGTTGTT-------G-AAANCCTAAGAAAAAGGCTCCACGATCTTTNNAATACNGTACATCTAAGANCNCCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAA
Reference ( gi|1 ) : GTCA-TCTAG--GC--CAT-TT-T--TT-GGGCCTAA-CCT-CAAACTTAATTTGCC--AAACGAAAATTATTT---ATTGATTA-T-CAT-T-G--CAAGAAAA-TA--TA-TAC-AAA----CAACA-TA--ATAAAAA--C-GGC--GCCTG--T--ATTATCGATGGGAAAATGGGAAATTTTGGGGTTAAATG-ATG--GTTTT--T-----A-AT--A--AAAAT---GCCAAAAA--CTGGGAAATTG----AAG-A------AAAAA-T-----ATAATTCAT--GTACCCTACAATTG--AAAACCAA--T-GTTCAAA-T-GTTC-AAA--TTTCAAC-C-T---TT----AA-A-CGAT-TA-A--G--CAT-AA---A-A--A--------ATC-GA--GGT-CT-G----T-A-TCT-CG---ATGGGAAAATGTGAATTTTGGGG--T--AAAA-TG-AC-G--TT-TT-T-T------A-T---T--AC-G-AAAATCGC-C-AAA---AAATTGGAGA----ATTG----AAGAA----AA--AA---TATAATTTA-A----TG-TAACA---TAC-A--T-T---A-AAACCAGTC-CATC-A-A-TTTT-AAA--------TT-TC---------A----------A----------A-TC-----T------------A--CA-T--ATT-------AAAAT-------TCG----AACTCT-TGTT--TCCTTGGTGGGGAAAAGGGGATTT-TCT-G--TTAAA--TGGTGGT--TGTTT-T-TTAA-ATA-AT---A-AA-ATCGCC--A-AAAA-CTGG-AAA----------CTG----AA-G-AGAAA--A--TATAATT----TG--TGTAACCTAC-AA-TGAAAA--CAAGCCA---TCAT-ATTT-TTAAA--TG--T----C-------A--TTC-T-TTAA-A-TG-A--AGACA--A--T-A--AT-A----A--AA--------ATC-GGCTG--A--T-TCA--T--C-TCG-A-T-GAAAAGAAGGGAATTTTTTTGG-TT---AAA--TG-A-T-G--TTTT-TT-----AATTC-A----A---AAATCGCC-AAAAAACTGG-AAGATT----A-AAGATA-------AATTATA-AATT---TGGTT---GTAACCTTACAAT-----A-T-TA---CA----AGC---C----TCA-----TAT---TT-TTGAA-A---T-T----C----A--CC-----T---T------AA-A-T-GATAA-AC--CAT-AA-TAA--------ATA-TCGGCTG--A-T-TTA--T--CT-C--GA-TGGAAAA--A--GGG--A--TTTT-G-G-G-TTAAA--TGA-TGTTTTTTT---T--AA---T-TC-AAAA--TCG--GC-AAAA-CA----A--GGA-A---TTG-GG---AGAGAAA--ATATAA---AT--CATG-TATTCTACAATTGAAAACCAGTCC-TC--A-ATTTTTC-AA--TTTCA---A----TATTC----AA-AT-GA--TC--A-A-T-TAATGTTTT-TAA-CCAG-CAGA----ATTTTCGTTTCCTGG---G---TAAATTTTGGG-GGGGGG---TCTTTGCTTTTT--TAATAAAAAGTGTT-------G-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTA----T-TACA------ATCCCCCCCACAT--ATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAAA
gi|6 : GTCAATCTAG---C--CAT-TT-T--TT-GGGCCTAA-CCT-CAAACT-AATT-GC----AACAGAAATGATTT---ATTGATTA-TTCAT---G--CAAGAAAA-TA--TA-TAC-AAA----CAGCA-TA--ATAAAAAT-C-GGC--TGCGG--T--ATC-TCGATGGGAAAATGGGAA-TTTTAGGGTTAAATG-ATG--TTTTT--TTTA--A-AT--ATGAAAATA--GCCAAAAG--CTGG-AAATTG----AAG-A------AAAAA-T-----ATAATTAAT--GTACCCAACAAT-G--AAAACCAA--T-GTC--AA-T-TTTC-AAA--TTTCAAC-C-T---TT----AA-A-CGAT-T--G--G--CATAAA---A-A--A--------ATC-G---GCTGCT-G----T-A-TCT-CG---ATGGGAAAATGGAAATATTGGGA--T--AAAA-TG-ACGG--TT-TT-T-TAA----A-A---T--AC-A-AAAATCGC-C--CA---AAATTGGA-A----ATT
gi|5 : taGTCAATCTAG--GC--CAT-TT-TGTTT-GGTCCTAA-CCT-CAAACT-AATT-GC----AACAGAAATGATTT---ATTGATTA-TTCAT-TAG--CAAGAAAA-TA--TA-TAC-AAA----CAGCA-TA--ATAAAAATCC-GGC--TGCGG--T--ATC-TCGATGGGAAA-TGGGAA-TTTTAGGGTTAAATGTATG--TTTTT--TTA---A-AT--ATGAAAATA--GCCAAAG---CTGG-AAATTG----AAG-A------AAAAA-T-----ATAATTAAT--GTACCCAACAA-TGACAAAACCAA--T-GTC--AA-T-TTTC-AAATTTTTCAAC-C-T---TT----AA-ACCGAT-TG-T--G--CATAAA---A-A--A--------ATC-G---GCT-GT-G----T-A-TCT-CGA--ATGGGAAAATGGAAATATTGGGA--T--AAAATTG-AC-G--GT-TT-T-TAA----A-A---T--ACAA-AAAATCGC-C-GCA---AAATTGGGAA----ATTGT---AATAA----AAAGAA---TATAATTT--A----TG-TAACC---TAC-A--A-TGA-A-AAGGCAGTCTCA---A-A-TTTT-AAA--------TT-TC---------A----------A----------C-TT-----T------------A--
gi|3 : taGTAA-TCTGGTAGC--CAT-TT-T--TTTGGGCTTAA-CTT-CAAACTTA--TTG----GAACAAAAATGATTT---ATTGATTT-C-TAA-T-G--CAAGAAAA-TA--TA-TAT-AAA----CAACA-TA--AAAGAAAT-C-AACTGGC--G--T--A-TGTTGATGGGAAAATAGG-AATTTT-GGGTTAAATG-ATGTTTTTTT--T-----A-AT--A--TAAATATCGGCATATA--CT-GGAATTTC----AAG-A------AAAAC-T-----ATAATTCAA--GTACCCTACAATGA--AAAAC--A--T-TCTCAAATT-GT---AAA--TTTCAAC-T-T---TTTTAAAA-A-CAAT-T--A--G--CAT-AA---AGA--A--------ATC-GG--CTC-CT-G----T-A-TAT-CG---ATGGGAAAATTGGAATTTTTGGG--T--AAAA-TC-AT-G---T-TT-T-T------A-A---T--AT-G-AAAATTGC-C--CA---AAATT-GAAA----ATTG----AAG-A----AA--AA---TATTATTT--A----TG-TATCC---TAC-AG-T-G---A-AAACCAGTC---TC-A-ACTTTT-AAATATCAGCCTT-TT---------A----------ATG--------A-TC-----A------------A--CA-T--ATT-------AAAAA-------TCG-----GCTGT-TGTT--TCC--------GAA--------TG-TTT-GGATTAAA--TGGTTGT--TTTTT-T-TTCA-A
gi|11 : GTCAATCTAG---C--CAT-TT-T--TT-GGGCCTAA-CCT-CAAAGT-AATT-GC----AACAGAAATTATTT---ATTGATTA-TTCAT---G--CAAGAAAA-TA--TA----------------A-TA--A-AAAAT--C-GGC--TGCTG--T--ATC-TCGATGGGAAAATGGGAA-TTTTGGGGTTAAATG-ATG--GTTTT--TTTA--ATAT--A--AAAATC--GCCAAAAA--CTGG-AAATTG----AAG-A------AAAAA-T-----ATAATTCAT--GTACCCg
gi|7 : taGTCAATCTAG---C--CAT-AT-T--T---GACATAA-CCT-CAAAACTAATT-GC----AACAGAAATGATTT---ATTGATTA-TTCAT---G--CGAGAAAA-TACATA-TAC-AAA----CAACA-TA--ATAAAAAT-C-GGC---TATG--T--ATC-TCGATGGGAAAATTGG-AATTTTGGGGTT-TATG-ATG--GTTTTG-T-----ATATA-A--AAAAT---GCCCAAAA--CT-GGAAATTGAA--AAA-A------AAAAA-T-----GTAATTTAT--GTATCCTACAA-TG--AAAATCAATCT-GTT-AAA-T--TTT-AAATGTTTCAGT-C-T---TT----AAGA-TGAC-AACA--C--CAT-AA---ATA--A--------A
gi|8 : taGTCAATCTAG---C--CAT-AT-T--T----GACAAA-CCT-CAAACACA--TTGC-----ACAGAAATGATTTTATATTGATTA-TTCATGC-GATCGAGAAAACTA--TAATACCAAA----CAACAATATTATAATAAT-C-GGC--TACTG--TTAATTCTCGATGGGAAAATTGGAA-TTTTGGGGTTTA-TG-ATG--GTTTTGTT-----A-ATG-A--AAAATC--GCCAAAAA--CTGG-AAATTGTGAAAAA-A------AAAAA-T-----GTAATTTATCTGTATCCTACAATGA--AAAATCAA--T-CTT-AAA-T-TCTT-AAAT-TTTCAGT-C-T---TT----AA-A-TGAT-CA-AC-T--CAT-AA---A-A--A--------Aaaaaacagtctgctgtat
gi|14 : GTCA-CTCAA--GCTACAT-TG-T--TC-GTGCAAAA-CCT-CAAACTTAATGTAACAAAAACGAAA------T---ATTGAATATT-CA--T-A--CAAGACAA-TA--TA-TAG-AAA----GAAaa
gi|17 : gtcaaGTCAATCTAG---C--CATATTGT--TT-GTGCTTAAACCT-CAA---CAA-TTG----AAACAAAA--TAAAT---ATTGGTTATT-CA--T-G--CA--GAAA-TA--Tagtttgttatatctcaatgggaa
gi|9 : aA-TCTAG---C--CAT-AT-T--TT-AGGCAACA-CCT-CAAACT-AATT-GC----AACAGAGATTATTC---A--------------T-G--CAAGAAA--------------------CAGTA-TA--A--AAAT--C-GGC--TGCTG--C--ATC-TCGATGGAAA-----------------TTATAT--ATA-----TA--T-----A-AA--A--TAAATC--GCCCCAAA--CTGAAAAA--A----AAA-ACACCCCAAAAA-CCAGAAATGATTTAT--GTAACCTACAA-TA--AAAACCAG--T--CTCATA-T-TTTT-AAA--TTTTAAC-C-T---TC----AA-----------------CAT-AA---A-A--A--------Attgttatatccaatgta
gi|15 : taatcaCTAA--GC--CAT-TT-T--T--GGGCCTCA-CTTTCAAGCT-AATT-GCA--AAA--GAAATTAAT----ATT---TA-T-TAT-T-----------------TA-TAC-AAA----CAACA-TA--AAAAATT--C-GGC--TGCTG--T--ATaaacc
gi|18 : caatgAA-T---TA-TGT-AAATGATCAACA-CA--ATAAAAA--C-GGC--TGCTG--T--AATCTCGATGGGAAAGTGGGAA
gi|13 : attttaaatttt--TA-AAT-AAT----CAACA-TA--ATAAAAA--CCGGC--TGCTG--T--ATC-TCGATGGAAAAATGG-AAATGTTGGAGTTAAATG-ATG--TTTTT--TTTTA-A-AT--AT-AAAAttg
gi|4 : gtaacctacaatgaaaaccagtcgcaaattgtaatttcagtcttAACA-CA--ATAAAGA--T---C--GACTGATT--TTTCTCGATGGGAAGAAGGGGA-TTTGGGGGTTAAGTT-ATG--TTTTT--TTC---ATAT--C--AAAATC--GCCAAAAAAACTGG-AGATTG----AAG-A------GAAAA-T-----ATAATTCAT--GTATTCTAC------------CAG--T--CTCATA-T--TTT-AAA--TTTCAACAT-T---TT----AA-ATTGAT-TA-ATTGTTCTT-AA---A---------------C-CA--G----T-A----TAA-TTT-CGTTCCTGGG---ACGTAA---TTGGGG-------GG-GG-GG-G--TTCTT-T-T------ATT---T--AA-T-AAAGT-GT-T---A---GAATTTGAAA----TTTT----AAGAA----AA--AACTCCACGATTT--T----TG-TAATACTGTAC-A--TCT---A-AGACCA
gi|2 : atcgccaaaaactggaaattgaagagaaaatttaatctgtgtaatctacaataaaaacaagcctcatgttttaaatttcaacctttaaatgataTAAAGAT-C-GGC--TCTTG--T---TTCTTGGTGGGAAAA--GGGAATTTTCTG-TTAAATG-GTG--TTTTT--CTACTCA-AT--A--AAAATC--GCCAAAA---C--GGAAAT-G----AAG-A------AAA----------TAATT-----GTTAACTACAAATG--AAAAC-AA--G-CCTCATA-T--TTT-AAA--TTTCAAC-C-T---TTT---AA-A-TGAA--A-A--A--CAT-AATAAA-A--A--------ATC-GG------CT-GAATTC-A-TCTTCG---ATGGAAAAGAAGGAATTTTTTGG--TT-AAAA-TG-GT-G--TT-TT-C-TTAAAAAA-T---T---C-A-AAAATGGC-C-AAA---AAACTGGAAAG---ATTGA---AAGAG----AA--AA---TATAAGTCACA----TGTTATTA---TAC-A--A-T---A-AAA-TAGTCTCAT--A-A-TT--------------TT-TC---------A----------A----------T-TC-----T------------AATTA-T--ATT-------cccccacccccaacaacaaaaataaatcgaggttatgatataagtaccgcgtacgtgtgtttgtgtgtgtgtgtgtgaaaataacatctgaggtcgaaaaa
gi|10 : tcgctcaaagagaaattagagacacgataagaagcagaaaactataactatgtaacatacaaatgaaaccagtctcaaattttaatttcaatctacaatATTT--GGGTTAAATG-TTG--GTTTT--T-----T-ATTTG--AAAATA--GCTAAATA--CTTT-AAATTG----AAG-A------AAAAA-T-----GTATTTTAT--ATAATATACAA-TG--TAAACCAG--C--CTCATA-T-G-TC-AAA--TTTCAAC-CATTAATT----AA-A-TGATGTC-A--G--AAT-TA---A-A--ACTTTTCACACCAGAT-GGT-AT-T----T---TTT-CC---TTG----ACTGT-AATTTTTGGG--TAAAAAA-TT-AT-T--TT-TT-T-T------A--------AT-G--AAATTGT-T-AAA---ctattatataatcacacttaatgttttaaaaccagacagaatttcgttcctgggtgtaatttttttgggggggtcttgctttttaaaaataaaagttgttgaaaaacctaagaaaaaggctccacaatcttttaaatacatctaaccccccca
gi|4 : act---GCCAAAAA--CTGG-AAATTG----AAG-A------GAAAA-T-----TTAATCTGT--GTAATCTACAAT----AAAAACAA--G-CCTCA---T-GTTTTAAA--TTTCAAC-C-T---TT----AA-A-TGAT--A-A--A--CAC-AATA-A-A--G--------ATC-GA------CT-GATT-T-T-TCT-CG---ATGGGAAGAAGGGGATTTGGGGG--T--TAAG-TT-AT-G--TT-TT-T-T--------TCA-T--AT-C-AAAATCGC-CAAAA---AAACTGGAG-----ATTG----AAGAG----AA--AA---TATAATT--------------CA---TGT-A--T-T-----CTACCAGTCTCAT----A-TTTT-AAA--------TT-TC---------A-------------------------------------------A--CA-T--TTT-------AAA
gi|2 : atcG----AAGCA------GAAAACT-----ATAACT-AT--GTAACATACAAATG--AAA-CCAG--T--CTCAAA-T-TTT---AA--TTTCAAT-C-T------------A-CAAT-TA-A----------------A--G--------ATC-G---GCT-CTTG----T-T-TCT-TG---GTGGGAAAAGG-GAATTTTCTGT--T--AAA--TG-GT-G--TT-TT-TCT------A-C---TCAAT-A-AAAATCGC-C-AAA---A---CGGAAA------TG----AAGAA----AA---------TAATT---G----T--TAAC----TAC-AAAT-G---A-AAACAAGCC---TC-ATA-TTTT-AAA--------TT-TC---------A----------A------------CC-----TTTTAAATGAAAAA--CA-T--AAT-------AAAAAA------TCGGCTGAATTCA-T------CTTCGATGGAAAAGAAGGAATTT-TTT-GG-TTAAA----ATGGT---GTTT-TCTTAA-AAA-ATTCAA-AA-ATGGCC--A-AAAAACTGG-AAAGA--------TTG----AAAG-AGAAA--A--TATAAGTCACATG--T-TATTATAC-AA-T-AAAA--T-AGTC----TCATAATTT-TTCAA--T---T----CTAATTATA--TTC-TATTAT-A-TA-A--TCACA--CT-T-A--AT-GTTTTA--AA--------ACCAGACAG--AATT-TCG--TTCC-TGG-G-T----------GTAATTTTTTTGG-GG---GGG--TC-T-T-G--CTTT-TTAAA--AAT---A----A---AAGTTGTT-GAAAAACttgattaattgttcttaaaccagtataatttcgttcctgggacgtaattgggggggggggttcttttatttaataaagtgttagaatttgaaattttaagaaaaaactccacgatttttgtaatactgtacatctaagaccacccccacccccaacaacaaaaataaatcgaggttatgatataagtaccgcgtacgtgtgtttgtgtgtgtgtgtgtgaaaataacatctgaggtcgaaaaa
gi|13 : tcgctcaaagagaaattagagacacgataa--GTAACCTACAAT-G--AAAACCAG--TCG--CAAA-TTGT----AA--TTTCAGT-C-T---TT----AA-A-TAAT-CA-A-----CAT-AATA-A-A--A--------ACC-G---GCTGCT-G----T-A-TCT-CG---ATGGAAAAATGGAAATGTTGGAG--T--TAAA-TG-AT-G--TT-TT-T-T------T-T---T--Actaagaaaaaggctccacaatcttttaaatacatctaaccccccca
gi|18 : TTT-AAA--TTTTAAT-TAT---GT----AA-A-TGAT-CA-A-----CAC-AAT--A-A--A--------AAC-G---GCTGCT-G----T-AATCT-CG---ATGGGAAAGTGGGAATTaatataaaa
gi|3 : atT----AA-A-CAA-----------CAT-AA---A-AGAA--------ATC-AACTGGC----G----T-A-TGT-TG---ATGGGAAAATAGGAATTTTGGGT--T--AAA--TG-AT-G--TT-TT-T-T------T-TAA-T--AT-A-AATATCGG-C-ATA---TA-CTGGA-A----TTTC----AAGAA----AA--AC---TATAATTCA-A-----G-TACCC---TAC-AA-T-G---A-AAAACATTC---TC-A-AATTGT-AAA--------TT-TC---------A----------A----------C-TT-----TTTTAAAA-----A--CA----ATT-------AGCATAAAGAAATCG----G-CTCC-TGTA--TA-TCGATGGGAAAATTGGAATTT-TTG-G--GTAAA-------ATCATGTTT-T-T--A-ATA-TG---A-AA-ATTGCC--C-AAAA-TTGA-AAA----------TTG----AA-G-A-AAA--A--TATTATT----TA--TGTATCCTAC-AG-TGAAAA--CCAGTC----TCA--ACTT-TTAAA--TA--T----C-------A--GCC-T-TTTA-A-TG-AT-CAAC---A--T-A--TT-A----A--AA--------ATC-GGCTG-------TTG--T--T-TC----C-GAA------------TGTTTGGATT---AAA--TG-GTT-G--TTTT-TT------TTTC-A----A---g
gi|6 : gtaatctggtagccatttttttgggcttaacttcaaacttattggaacaaaaatgatttattgatttctaatgcaagaaaatatata-A--G--CAT-AATA-A-A--A--------ATC-G---GCTGCG-G----T-A-TCT-CG---ATGGGAAAATGGGAATTTTAGGG--T--TAAA-TG-AT-G--TT-TT-T-T------T-TAAAT--AT-G-AAAATAGC-C-AAA---AG-CTGGA-A----ATTG----AAGAA----AA--AA---TATAATT-A-A----TG-TACCC---AAC-AA-T-G---A-AAACCAAT---GTC-A-A-TTTTCAAA--------TT-TC---------A----------A----------CCTT-----T------------A--AA-CG-ATTGGCATAAAAAAA-------TCG----G-CTGC-TGTA--TC-TCGATGGGAAAATGGAAATAT-TGG-G--ATAAAA-TGACGGT--T--TT-T-TAAA-ATA-CA---A-AA-ATCGCC--C-AAAA-TTGG-AAA----------TTg
gi|5 : tagtcaatctagccattttttgggcctaacctcaaactaattgcaacagaaatgatttattgattattcatgcaagaaaatatatacaaac-A--G--CAT-AATA-A-A--A--------ATC-CG--GCTGCG-G----T-A-TCT-CG---ATGGGAAA-TGGGAATTTTAGGG--T--TAAA-TGTAT-G--TT-TT-T-TTA----A-A---T--AT-G-AAAATAGC-C-AAA---G--CTGGA-A----ATTG----AAGAA----AA--AA---TATAATT-A-A----TG-TACCC---AAC-A--A-TGACA-AAACCAAT---GTC-A-A-TTTTCAAA--------TT-TTTCAACCTTTA----------A----------A-CCGATTGT------------G--CA-T--AAA-------AAAAT--------CG----G---CTGTGTA--TCTCGAATGGGAAAATGGAAATAT-TGG-G--ATAAAATTGACGGT--T---T-T-TAAA-ATACAA---A-AA-ATCGCC--GCAAAA-TTGGGAAA----------TTGT---AA-T-AAAAAGAA--TATAATT----TA--TGTAACCTAC-AA-TGAAAAGGC-AGTC----TCA--AATT-TTAAA--TT--T----C-------A---AC-T-TTA
gi|7 : tagtcaatctaggccattttgtttggtcctaacctcaaactaattgcaacagaaatgatttattgattattcattagcaagaaaatatatacaaac-A--A--CAT-AATA-A-A--A--------ATC-G---GCT-AT-G----T-A-TCT-CG---ATGGGAAAATTGGAATTTTGGGGTTT--ATGA-TG----G--TT-TT-G-T------A-----T--AT-A-AAAAATGC-C--CA---AAACTGGA-A----ATTGAA--AAAAA----AA--AA---TGTAATTT--A----TG-TATCC---TACAA--T-G---A-AAATCAATC-TGTTAA-A-TTTT-AAATG------TT-TC---------A----------
gi|11 : tagtcaatctagccatatttgacataacctcaaaactaattgcaacagaaatgatttattgattattcatgcgagaaaatacatatacaaacAT-AA---A-A--A--------ATC-G---GCTGCT-G----T-A-TCT-CG---ATGGGAAAATGGGAATTTTGGGG--T--TAAA-TG-AT-GGTTT-TT-T-T------A-A---T--AT-A-AAAATCGC-C--AA---AAACTGGA-A----ATTG----AAGAA----AA--AA---TATAATTC--A----TG-TAgtctttaagatgacaacaccataaataaaaaaaacagtctgctgtat
gi|8 : tagtcaatctagccattttttgggcctaacctcaaagtaattgcaacagaaattatttattgattattcatgcaagaaaatata-TCT-CG---ATGGGAAAATTGGAATTTTGGGGTTT--ATGA-TG----G--TT-TTGT-T------A--------AT-GAAAAATCGC-C--AA---AAACTGGA-A----ATTGTGAAAAAAA----AA--AA---TGTAATTTATC----TG-TATCC---TAC-A--A-T---G-AAA--A-----ATC-A-A-TCTT-AAA--------TTCTT---------A----------A----------A-TT-----T------------T--CAGT--CTT-------TAAATGA-----TC-----AACTCccc
gi|10 : gtcaatctagccatatttgacaaacctcaaacacattgcacagaaatgattttatattgattattcatgcgatcgagaaaactataataccaaacaacaatattataataatcggctactgttaatATTT--GGG--T--TAAA-TG-TT-GG-TT-TT-T-T------A-T---T---T-G-AAAATAGC-T-AAA---TACTTTAA------ATTG----AAGAA----AA--AA---TGT-ATTTT-A----TA-TAATA---TAC-A--A-T---GTAAACCAGCCTCAT----A-TGTC-AAA--------TT-TC---------A----------A-------------C---------------------CA-TTAATT-------AAAataaaaaaaa
gi|4 : actATCGC-C-AAA---AA-CTGGA-A----ATTG----AAGAG----AA--AA---T-----TTA-ATCTGTG-TAATC---TAC-A--A-T---A-AAAACAAGC-C-TC-ATG-TTTT-AAA--------TT-TC---------A----------ACCTTTAAATGA-TA-----A------------A--CA-C--AAT-------AAAGA-------TCG-----ACTGA-T-TT--TTCTCGATGGGAAGAAGGGGATTTGGGG-G--TTAAG--T--TA----TGTTT-T-TTTC-ATA-TC---A-AA-ATCGCCAAA-AAAA-CTGG-AGA----------TTG----AA-G-AGAAA--A--TATAATT----CA--TGTATTCTAC------------C-AGTC----TCAT-A-TT-TTAAA--TT--T----CA------A--CAT-T-TTAA-A-Ttgatgtcagaattaaaacttttcacaccagatggtattttttccttgactgtaatttttgggtaaaaaattattttttttaatgaaattgttaaa
gi|2 : TCGCTC-AAAGAGAAATTAGAGACACGAT------AAGAAGCAGAA--AAC--TATAACT---A----TG-TAACA---TAC-A--AAT---G-AAACCAGTC---TC-A-A-ATTT-TAA--------TT-TC---------A----------A------------TC-----T------------A--CA----ATT-------AAAGA-------TCG----G-CTCT-TGTT--TC-TTGGTGGG-AAAAGGGAATTT-TCT-G--TTAAA--TGGTGTT--TTTCT-A-CTCA-ATA------A-AA-ATCGCC--A-AAA---CGG-AAA-----------TG----AA-G-AAA--------ATAA-T----TG--T-TAA-CTACAAA-TGAAAA--CAAGCC----TCAT-A-TT-TTAAA--TT--T----C-------A--ACCTT-TTAA-A-TG-A--AAAAC--A--T-A--ATAA----A--AA--------ATC-GGCTGA-A--T-TCA--T--CTTCG-A-TGGAAAAGAAGGAA--TTTTTTGG-TTA--AAA--TG-G-T-G--TTTT-CTTAAAAAATTC-A----A---AAATGGCC-AAAAAACTGGAAAGATTG---A-AAGAGA-------AAATATA-AGTCACAT-GTT---ATTA---TACAAT-----A----A---AAT---AGT---C----TCA-----TAA---TT-TTTCA-A---T-T----C----tgattaattgttcttaaaccagtataatttcgttcctgggacgtaattgggggggggggttcttttatttaataaagtgttagaatttgaaattttaagaaaaaactccacgatttttgtaatactgtacatctaagaccacccccacccccaacaacaaaaataaatcgaggttatgatataagtaccgcgtacgtgtgtttgtgtgtgtgtgtgtgaaaataacatctgaggtcgaaaaa
gi|13 : G-TAACC---TAC-AA-T-G---A-AAACCAGTCGCA---A-A-TTGT--AA--------TT-TC---------AGTCTTTAAATA----------A-TC-----A------------A--CA-T--AAT-------AAAAA-------CCG-----GCTGC-TGTA--T-CTCGATGGAAAAATGGAAATGT-TGGAG--TTAAA--TGAT-GT--TTTTT-T-TTAA-AT--AT---A-AA-Ataattatattctattatataatcacacttaatgttttaaaaccagacagaatttcgttcctgggtgtaatttttttgggggggtcttgctttttaaaaataaaagttgttgaaaaacctaagaaaaaggctccacaatcttttaaatacatctaaccccccca
gi|8 : AA--------TA-CC---------A----------A----------A--C-----A------------A--CAAT--ATT-------ATAATAA-----TCG----G-CTAC-TGTTAATTCTCGATGGGAAAATTGGAATTT-TGG-G--GTTTA--TGATGGT--T--TT-G-TTAA--TG-A----A-AA-ATCGCC--A-AAAA-CTGG-AAA----------TTGTGAAAA-A-AAAAA--A--TGTAATT----TATCTGTATCCTAC-AA-TGAAAAATCAATC-----TTAA-ATTC-TTAAAT-TT--T----C-------A--GTC-T-TTAA-A-TG-A----TCA--AC-T-C--AT-A----A--AA--------A
gi|7 : gtcaatctagccatatttgacaaacctcaaacacattgcacagaaatgattttatattgattattcatgcgatcgagaaaactatC---------A----------A----------A--C-----A------------A--CA-T--AAT-------AAAAA-------TCG----G---CTATGTA--TC-TCGATGGGAAAATTGGAATTT-TGG-G--GTTTA--TGATGGT--T---T-T-GTAT-ATA-A----A-AA-AT-GCC--C-AAAA-CTGG-AAA----------TTG----AA-A-AAAAA--AAATGTAATT----TA--TGTATCCTAC-AA-TGAAAAT-CAATCTG---TTA--AATT-TTAAA--TGTTT----C-------A--GTC-T-TTAAGA-TG-A--CAACACCA--TAA--AT-A----A--AA--------Aaaa
gi|11 : tagtcaatctagccatatttgacataacctcaaaactaattgcaacagaaatgatttattgattattcatgcgagaaaatacatata---------A----------A----------A-TA-----T------------A---A-T--A---------AAAAA-------TCG----G-CTGC-TGTA--TC-TCGATGGGAAAATGGGAATTT-TGG-GG-TTAAA--TGATGGT--T--TT-T-TTAATATA-A------AA-ATCGCC--A-AAAA-CTGG-AAA----------TTG----AA-G-AAAAA--A--TATAATT----CA--TGTACCCaaacagtctgctgtat
gi|6 : tagtcaatctagccattttttgggcctaacctcaaagtaattgcaacagaaattatttattgattattcatgcaaga--CA-T--AAT-------AAAAA-------TCG----G-CTGC-GGTA--TC-TCGATGGGAAAATGGGAATTT-TAG-GG-TTAAA--TGATG-T--T-TTT-T-TTAA-ATA-TG---A-AA-ATAGCC--A-AAAG-CTGG-AAA----------TTG----AA-G-AAAAA--A--TATAATT----AA--TGTACCCAAC-AA-TGAAAAC-CAA--TG---TCA--ATTT-TCAAA--TT--T----C-------A--ACC-T-TTAA-A-CG-AT-TGGC---A--T-A--A--A----A--AA--------ATC-GGCTG--C--T-GTA--T--C-TCG-A-T-GGGAA-AATGGAAATATTGGGA-TA---AAA--TG-A-CGG--TTTT-TTAA---AATAC-A----A---AAATCGCC--CAAAATTGG-AA-ATT----
gi|5 : tagtcaatctagccattttttgggcctaacctcaaactaattgcaacagaaatgatttattgattattcatgcaagaaaatatatacaaacag--CA-T--AAT-------AAAAA-------TCC----GGCTGC-GGTA--TC-TCGATGGG-AAATGGGAATTT-TAG-GG-TTAAA--TGTATGT--T--TT-T-TTAA-ATA-TG---A-AA-ATAGCC--A-AAG--CTGG-AAA----------TTG----AA-G-AAAAA--A--TATAATT----AA--TGTACCCAAC-AA-TGACA----AAACCAATGTCA--ATTT-TCAAATTTT--T----C-------A--ACC-T-TTAA-ACCG-ATTGTGC---A--T-A--A--A----A--AA--------ATC-GGCTG-----T-GTA--T--C-TCGAA-T-GGGAAAATGGAAA--TATTGGG-AT---AAAATTG-A-C-G--GTTT-TTAA---AATACAA----A---AAATCGCC-GCAAAATTGG-GAAATT----GTAATAAA-------AAGAATATAATT---TA--T---GTAACC-TACAAT-----G----A---AAAGGCAGT---C----TCA-----AAT---TT-T--AA-AT--T-T----C----A--AC-----T---T------
gi|3 : tagtcaatctaggccattttgtttggtcctaacctcaaactaattgcaacagaaatgatttattgattattcattagcaagaaaatatatacaaacagTTGATGGGAAAATAGGAATTT-TGG-G--TTAAA--TGATG-T--T-TTT-T-TTAA--TA--T---A-AATATCGGC--A-TATA-CTGG-AAT----------TTC----AA-G-AAAAA--C--TATAATT----CA--AGTACCCTAC-AA-TGAAAA--ACATTC----TCA--AATT-GTAAA--TT--T----C-------AACTTT-T-TTA-------A--AAACA--AT-T-AGCAT-A----AAGAA--------ATC-GGCTC--C--T-GTA--T--A-TCG-A-T-GGGAAAATTGGAA-TTTTTGGG-TA---AAA--TC-A-T-G---TTT-TT-----AATAT-G----A---AAATTGCC-CAAAA--TTG-AAAATT----G-AAGA-A-------AAATAT--TATT---TA--T---GTATCC-TACAGTG----A-A-AA---CC----AGT---C----TCA------AC---TT-TT-AA-A---TAT----C----AGCCT-----T---T------TA-A-T-GATCA-A---CAT-AT-TAA--------AAA-TCGGCTG------TTG--T--TT-CCGAA-TG-------------------TTT-G-G-A-TTAAA--TGGTTGTTTTTTT-----------T-TC-AAta
gi|10 : gtaatctggtagccatttttttgggcttaacttcaaacttattggaacaaaaatgatttattgatttctaatgcaagaaaatatatataaacaacataaaagaaatcaactggcgtatg-G--TTAAA--TGTTGGT--TTTTTAT-TTGA-A-A-AT---A-------GCT--A-AATA-CTTT-AAA----------TTG----AA-G-AAAAA--A--TGTATTT----TA--TATAATATAC-AA-TGTAAA--CCAGCC----TCAT-A-TG-TCAAA--TT--TCAACC-------A--TTA-A-TTAA-A-TG-A--TGTCA--G--A-A--TT-A----A--AACTTTTCACACC-AGATGGTA--T-TTT--TTCC-TTG-ACT-GTAA-----------TTTTTGG-GTAAAAAA--TT-A-T-T--TTTT-TT-----AAT--------G---AAATTGTT-AAAg
gi|9 : actatttggTAT-ATA-AA---ATAA-ATCGCC--C-CAAA-CTGA-AAAAAAAAACACCCCA----AA-A-ACCAG--A--AATGATT----TA--TGTAACCTAC-AA-TAAAAA--CCAGTC----TCAT-ATTT-TTAAA--TT--T----T-------A--ACC-T-TCAACA-TA-A--AAAAA--A--
gi|4 : taatcaatctagccatattttaggcaacacctcaaactaattgcaacagagattattcatgcaagaaacagtataaaaatcggctgctgcatctcgatggaaattatata-ATCGCC--A-AAAA-CTGG-AAA----------TTG----AA-G-AGAAA--A--TTTAATC----TG--TGTAATCTAC-AA-TAAAAA--CAAGCC----TCAT-GTTT-T-AAA--TT--T----C-------A--ACC-T-TTAA-A-TG-AT-AAACA-----C-A--AT-A----A--AG--------ATC-GACTG--A--T-TTT--T--C-TCG-A-T-GGGAAGAAGGGGATTTGGG-GG-TT---AAG--TT-A-T-G--TTTT-TT--------TC-ATATCA---AAATCGCCAAAAAAACTGG--AGATT----G-AAGAGA-------AAATAT--AATT---CA--T---GTA---TT------------C-TA---CC----AGT---C----TCA-----TAT---TT-T--AA-A---T-TTCAAC----A--TT-----T---T------AA-ATT-GATTA-Aacc
gi|2 : G----AA-GCAGAAA--AC-TATAACT-----A--TGTAACATAC-AAATGAAAC--CA-GTC----TCAA-ATTT-T--AA--TT--T----C-------A--ATC-T----------------ACA--A--T-----T-A----A--AG--------ATC-GGCTC--T--T-GTT--T--C-TTG-G-T-GGGAA-AAGGGAATTTTCT--G-TT---AAA--TG-G-T-G--TTTT-TC-----TACTC-A----ATAAAAATCGCC-AAAA---CGG-AAA--T----G-AAGA-A-------AAT-----AATT-----GTT-----AAC--TACAA------A-T-GAAAACA----AGC---C----TCA-----TAT---TT-T--AA-A---T-T----TCA--A--CC-----T---TTT----AA-A-T-GA-AA-AA--CAT-AA-TAA--------AAAATCGGCTG--AAT-TCA--T--CTTC--GA-TGGAAAAGAA--GGA--A--TTTT-TTG-G-TTAAAA-TGG-TGTTTTCTT---A--AAAAAT-TC-AAAA--ATG--GC-CAAA-AA----ACTGGA-AAGATTG-AA---AGAGAAA--ATATAA---GTCACATGTTATTATACAAT--AAAA-TAGT-C-TCATA-ATTTTTC-AA--TTCTAATTA----TATTCTATTAT-AT-AA--TC--ACACT-TAATGTTTTAAAA-CCAGACAGA----A-TTTCG-TTCCTGGGT-G---TAATTTTTTTG-GGGGGG---TC-TTGCTTTTTAAAAATAAAAGTTGTT-------GAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAA----A-TACATCT---AACCCCCCCAttgttcttaaaccagtataatttcgttcctgggacgtaattgggggggggggttcttttatttaataaagtgttagaatttgaaattttaagaaaaaactccacgatttttgtaatactgtacatctaagaccacccccacccccaacaacaaaaataaatcgaggttatgatataagtaccgcgtacgtgtgtttgtgtgtgtgtgtgtgaaaataacatctgaggtcgaaaaa
gi|13 : tcgctcaaagagaaattagagacacgataaGTAACCTAC-AA-TGAAAA--CCAGTCG----CAA-ATTG-T--AA--TT--T----C-------A--GTC-T-TTAA-A-TA-ATCA-ACA-----T-A--AT-A----A--AA--------ACC-GGCTG--C--T-GTA--T--C-TCG-A-T-GGAAA-AATGGAAATGTTGGAG-TT---AAA--TG-A-T-G--TTTT-TT-------TTT-A----A---ATAT
gi|11 : T-ATTTATTGA-------T----T-------A--TTC--------A-TGCA--AGAAA--A--T-ATAAT-A----A--AAA-------ATC-GGCTG--C--T-GTA--T--C-TCG-A-T-GGGAAAATGGGAA-TTTTGGGG-TT---AAA--TG-A-T-GGTTTTT-TT-----AATAT-A----A---AAATCGCC--AAAAACTGG-AA-ATT----G-AAGAAA-------AAATATA-Aaaaa
gi|18 : tagtcaatctagccattttttgggcctaacctcaaagtaattgcaacagaaatTT-TTAAA--TT--T----T-------AA-TTA-T-GTAA-A-TG-ATCA-ACA-----C-A--AT-A----A--AA--------A-C-GGCTG--C--TGTAA--T--C-TCG-A-T-GGGAAAGTGGGAATTttcatgtaccc
gi|6 : a--AAACAGCA--T-A--AT-A----A--AA--------ATC-GGCTG--C--G-GTA--T--C-TCG-A-T-GGGAAAATGGGAA-TTTTAGGG-TT---AAA--TG-A-T-G--TTTT-TTTTA--AATAT-G----A---AAATAGCC--AAAAGCTGG-AA-ATT----G-AAGAAA-------AAATATA-A--T---TAA-T---GT-ACCCAACAAT-----G----A----A----AAC---CAATGTCA------AT---TT-TCAAA-T---T-T----C----AACCT-----T---T------AA-A-C-GATTG-G---CAT-AA--AA--------AAA-TCGGCTG--C-T-GTA--T--CT-C--GA-TGGGAAA--A--TGGAAA--TATT-G-G-GATAAAA--TGA-CGGTTTTTTA--A--AA---T-ACAAAAA--TCGC-CC-AAAA-TT----G--GAA-A---TTg
gi|5 : tagtcaatctagccattttttgggcctaacctcaaactaattgcaacagaaatgatttattgattattcatgcaagaaaatatatac--AAACAGCA--T-A--AT-A----A--AA--------ATCCGGCTG--C--G-GTA--T--C-TCG-A-T-GGGAA-ATGGGAATTTTAG-GG-TT---AAA--TGTA-T-G--TTTT-TTTA---AATAT-G----A---AAATAGCC-AAAG--CTGG-AA-ATT----G-AAGAAA-------AAATATA-A--T---TAAT----GTA-CCCAACAAT-----G----A---CA----AAA---C----CAA-----TGTCAATT-TTCAA-A---T-T----TTTCAA--CC-----T---TT-----AA-A-CCGATTG-TG--CAT-AA-AAA--------A-A-TCGGCTG----T-GTA--T--CT-C--GAATGGGAAA--A--TGG--AAATATT-G-G-G-ATAAAATTGA-CGGTTTTTA---A--AA---T-AC-AAAAAATCGCCGC-AAAA-TT----G--GGA-AA--TTG-TA---ATAAAAAGAATATAA---TT--TATG-TAACCTACAATGAAAAGGCAGT-C-TC--A-AATTTTA-AA--TTTCA---A----
gi|3 : tagtcaatctaggccattttgtttggtcctaacctcaaactaattgcaacagaaatgatttattgattattcattagcaagaaaatatatac--AAACA--ACAT-A--AA-A----G--AA--------ATC-AACTG--G--C-GTA--T--G-TTG-A-T-GGGAAAATAGGAATTTTG--GG-TT---AAA--TG-A-T-GTTTTTT-TT-----AATAT-A----A---ATATCGGC--ATATACTGG-AAT-TT----C-AAGAAA-------AACTATA-ATTC---AAGT-------ACCCTACAAT-----G----A---AA----AACATTC----TCA-----AAT---TG-T--AA-AT--T-T----C----A--AC-----T---TTTTTAAAA-A-C-AATTA-G---CAT-AA--AG--------AAA-TCGGCTC--C-T-GTA--T--AT-C--GA-TGGGAAA--ATTGGA--AT-TTTT-G-G-G-TAAAA--TCA-TG---TTTT---T--AA---TATG-AAAA--TTGC-CC-AAAA-TT----G--AAA-A---TT--GA---AGA-AAA--ATATTA---TT--TATG-TATCCTACAG-TGAAAACCAGT-C-TC--A-ACTTTTA-AA--TATCA---G----CCTTT----TA-AT-GA--TC--A-A-cttta
gi|7 : gtaatctggtagccatttttttgggcttaacttcaaacttattggaacaaaaatgatttattgatttctaatgcaagaaaatatatat--AAACA--ACAT-A--AT-A----A--AA--------ATC-GGCT---A--T-GTA--T--C-TCG-A-T-GGGAAAATTGGAA-TTTTGGGG-TT----TA--TG-A-T-G--GTTT-TG-----TATAT-A----A---AAAATGCC--CAAAACTGG-AA-ATTGA--A-AAAAAA-------AAATGT--AATT---TA--T---GTATCC-TACAATGAAA-A-T------CA----ATC---TG---TTA-----AAT---TT-T--AA-ATGTT-T----C----AGTCT-----T---T------AAGA-T-GACAACAC--CATAAA-TAA--------Acatattaaaaatcggctgttgtttccgaatgtttggattaaatggttgtttttttttcaag
gi|9 : tagtcaatctagccatatttgacataacctcaaaactaattgcaacagaaatgatttattgattattcatgcgagaaaatacatatac--AAACA--G--T-A---T-A----A--AA--------ATC-GGCTG--C--T-GCA--T--C-TCG-A-T-GGAAA------------------TT---ATA--T--A-T-A--TAT---------AA----A----AT--AAATCGCC-CCAAA-CTGA-AAAA------A-AAAACACCCCAAAAACCAGA-AAT-----GATTTATGTAACCT-ACAAT-----A-A-AAA--CC----AGT---C----TCA-----TAT---TT-TT-AA-A---T-T----TTA--A--CC-----T---T------CA-A-C--ATAA-Aaaaaacagtctgctgtat
gi|8 : taatcaatctagccatattttaggcaacacctcaaactaattgcaacagagattattcatgcaagACA--A--T-ATTAT-A----A--TA--------ATC-GGCTA--C--TGTTAATT--C-TCG-A-T-GGGAAAATTGGAATTTTGG-GG-TT---TA---TG-A-T-GG-TTTTGTT-----AATG--A----A---AAATCGCC--AAAAACTGG-AA-ATTGTGAA-AAAAAA-------AAATGT--AATT---TATCT---GTATCC-TACAATGAAAAA-T------CA----A-T---C----TTA-----AAT---TC-TT-AA-ATT-T-T----C----AGTCT-----T---T------AA-A-T-GATCA-ACT-CAT-AA-AAA--------Aaaaaaacc
gi|10 : gtcaatctagccatatttgacaaacctcaaacacattgcacagaaatgattttatattgattattcatgcgatcgagaaaactataataccaaacaTTTGGG-TT---AAA--TG-T-T-G--GTTT-TT-----TATTT-G----A---AAATAGCT--AAATACTTT-AA-ATT----G-AAGAAA-------AA--ATG-TATT---TTA-T---ATAATA-TACAAT-----G-TAAA---CC----AGC---C----TCA-----TAT---GT-C--AA-A---T-T----TCA--A--CCATTAAT---T------AA-A-T-GAT---GT--CAG-AATTAAAACTTTTCACA-CCAGATGGTA-T-TTT--TTCCT-T--GACTGTAA------------T--TTTT-G-G-G-TAAAA--AAT-TATTTTTTT---T--AA---T----GAAA--TTG--TT-AAAaa
gi|4 : actaATCGCC-AAAAA-CTGG-AA-ATT----G-AAGAGA-------AAATTTA-A-TC---TG--T---GTAATCT-ACAAT-----A-A-AAA--CA----AGC---C----TCA-----TGT---TT-T--AA-A---T-T----TCA--A--CC-----T---TT-----AA-A-T-GATAA-AC---AC-AA-TAA--------AGA-TCGACTG--A-T-TTT--T--CT-C--GA-TGGGAAG--AAGGGG--A--TTTG-G-G-GGTTAAG--TTA-TGTTTTTTT---C--AT---A-TC-AAAA--TCG--CC-AAAA-AA----ACTGGAGA---TTG-A----AGAGAAA--ATATAA---TT--CATG-TATTCTAC----------CAGTC--TC--A-TATTTTA-AA--TTTCA---A----CATTTT---AA-ATTGA--TT--A-A-T-T---GTTCT-TAAACCAG-TATA----ATTT-CGTT-CCTGG---GACGTAA---TTGGG-GGGGGGGGTTCTTT---TATT--TAATAAA--GTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAA
gi|11 : TT---TGGGC---CTAACCTCAAAGT-----AAT-TG---CA----A-----------CAGAAATTAT---TTATTGATTA---T-T----C----A-------------T------GC-A-A-GA-AA-AT---AT-AA-TAA--------AAAATCGGCTG--C-T-GTA--T--CT-C--GA-TGGGAAA--ATGGGA--A--TTTT-G-G-GGTTAAA--TGA-TGGTTTTTT---T--AA---TATA-AAAA--TCG--CC-AAAAACT----G--GAA-A---TTG-A----AGAAAAA--ATATAA---TT--CATG-TA
gi|13 : tagtcaatctagccattt---GTAACCT-ACAATG----A-A-AA---CC----AGT---C----GCA-----AAT---TG-T--AA-T---T-T----C----AGTCT-----T---T------AA-A-T-AATCA-AC---AT-AA-TAA--------AAA-CCGGCTG--C-T-GTA--T--CT-C--GA-TGGAAAA--A--TGGAAA--TGTT-G-GAG-TTAAA--TGA-TGTTTTTTT---TTAAA---T-AT-AAAA--ccc
gi|18 : ---TT-TTAAA-T---T-T----T----A--AT-----TATGT------AA-A-T-GATCA-AC---AC-AA-TAA--------AAA--CGGCTG--C-T-GTAA-T--CT-C--GA-TGGGAAA--GT-GGG--A--ATT
gi|8 : a------AA-A-C-AACAATAT--TAT-AA-TAA------------TCGGCTA--C-TGTTAATT--CT-C--GA-TGGGAAA--ATTGGA--A--TTTT-G-G-G-GTTTA--TGA-TGGTTTTGT---T--AA---T-GA-AAAA--TCG--CCAAAAA-CT----G--GAA-A---TTG-TGAAAAAAAAAA--ATGTAATTTAT--C-TG-TATCCTACAATGAAAAATCAATCT-TA--A-ATTCTTA-AAT-TTTCA---G----TCTTT----AA-AT-GA--TC--A-A-C-TCATg
gi|6 : gtcaatctagccatatttgacaaacctcaaacacattgcacagaaatgattttatattgattattcatgcgatcgagaaaactataataccACAA-ACAGCAT-AA-TAA--------AAA-TCGGCTG--C-G-GTA--T--CT-C--GA-TGGGAAA--ATGGGA--A--TTTTAG-G-G-TTAAA--TGA-TGTTTTTTT---TA-AA---TATG-AAAA--TAG--CC-AAAAGCT----G--GAA-A---TT--GA---AGAAAAA--ATATAA---TT--AATG-TACCCAACAA-TGAAAACCAAT-G-TC--A-ATTTTCA-AA--TTTCA---A----CCTTT----AA-AC-GA--Taaaaaaaa
gi|7 : tagtcaatctagccattttttgggcctaacctcaaactaattgcaacagaaatgatttattgattattcatgcaagaaaatatatACAA-ACAACAT-AA-TAA--------AAA-TCGGCT---A-T-GTA--T--CT-C--GA-TGGGAAA--ATTGGA--A--TTTT-G-G-G-GTTTA--TGA-TGGTTTTGTATAT--AA--------AAAA--TGC--CC-AAAA-CT----G--GAA-A---TTGAAA---AAAAAAA--ATGTAA---TT--TATG-TATCCTACAA-TGAAAATCAATCTGTT--A-AATTTTA-AATGTTTCA---G----TCTTT----AAGAT-GA---C--A-A-tggcataaaaaaatcggctgctgtatctcgatgggaaaatggaaatattgggataaaatgacggttttttaaaatacaaaaatcgcccaaaattggaaatt
gi|9 : tagtcaatctagccatatttgacataacctcaaaactaattgcaacagaaatgatttattgattattcatgcgagaaaatacatatA-TAA--------AAA-TCGGCTG--C-T-GCA--T--CT-C--GA-TGGAAAcaccataaataaaaaaaacagtctgctgtat
gi|10 : taatcaatctagccatattttaggcaacacctcaaactaattgcaacagagattattcatgcaagaaacagtTTT-G-G-G-TTAAA--TGT-TG-GTTTTT---T--AT---T-TG-AAAA--T-A--GC-TAAA-TACTTTA----A-A---TT--GA---AGAAAAA--ATGTAT---TT--TATA-TAATATACAA-TGTAAACCAG-CC-TC----ATATGTCAAA--TTTCA---ACCATTAATT----AA-AT-GATGTCAGA-A-T-TAAAACTTT-TCA--CAC-CAGATGGTATTT---TTTCCTTGACTG---TAATTTTTGGGTAAAAAA---TTATT--TTTTT--TAAT-GAAATTGTT-------A-AAttatatatatataaaataaatcgccccaaactgaaaaaaaaaacaccccaaaaaccagaaatgatttatgtaacctacaataaaaaccagtctcatatttttaaattttaaccttcaacataaaaaaaaacc
gi|9 : actaAGAAA-----TGA---TT--TATG-TAACCTACAAT-AAAAACCAGT-C-TC--ATATTTTTA-AA--TTTTA---A----CCTTC----AA-
gi|13 : taatcaatctagccatattttaggcaacacctcaaactaattgcaacagagattattcatgcaagaaacagtataaaaatcggctgctgcatctcgatggaaattatatatatataaaataaatcgccccaaactgaaaaaaaaaacaccccaaaaaccG-TAACCTACAAT-GAAAACCAGTCG-CA--A-ATTGT---AA--TTTCA---G----TCTTT----AA-AT-AA--TC--A-A-CATAATcataaaaaaaaacc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ATCTAGTCAAACCAGCATCAAACGAATTGCATTAGAAATGAATTATTGATTATTCATGCAAGATAACATATTAAAAAATAGGTTGTTATATCTTAATGGAAAGATTTGCAACATGATAATTACCCCAAACTGGAAACTGAAGAA
Unaligned ( gi|16 ): TCTAGTCAAGCCAGCCTTATTGTTCGTACAAAACCTCAAACGGCAACAGTAACGCAATATTGATTATTCATTCAAGATAACATATTCCAAAAAGATG
Alignments
lowQualScore : 222 3 2222222 22 111 22222222 1111 1111111 11111 22222 1111 11 333333333333 1 2222 111 22 1 1 1 11 2 33 33 1 1 44444444 11 2 1 6666666666666666666 2 2 2 1 2 1 2 11 4444444444 11 11 2 2222 333 22 1 4444444444444 1 111 555555555555 22 33 11 1 3333 1 2222 11 1 1 2222222 33333 11 1 11 11111 222222 1 2222 666666666666 1 11 111111 22 1 222222 1 2222 11 222 111 11 2222 111 22 33333333333333333 11 1 44444444444444444444 222 4444444444
lowQualScore : 3 555 44 3 3 44 99 00 3 3 3 6 0 44 2 5555 2222222 4444 44444 333 3 9999 3 55 44 0 7 9 1 888 4 000 66 4 00000000 4 4 4 5555 4444444 22222 3 66 1 22222 0000 3 1 66 4 9999 4 5 111111111111 3 55 5 5 0 5 6 3 8 8 5 8888 1 444 88 6 0 0 3 7 88 3 1 1 11 55 3 3 88888888 88 1 4 0 88 7 8888888888888888888 55 6 2 0 1 6 0 6 0 5 1 2 0 3 5 0 4 88 3 1 9999999999 88 33 555 8 1111 4 1 555 22 3 7 4 1111111111111 3 333 111111111111 11 8 11 88 6 88 6 4 3 4444 3 0 4444 88 0 0 1 9999999 1 2 22222 0 33 9 2 3 33 00000 444444 22 3 5 1111 3 777777777777 0 33 555555 333 22 0 222222 2 5 6666 33 2 777 777 66 1111 555 77 0 22 44444444444444444 1 77 2 4 5 66666666666666666666 111 0000000000
lowQualScore : . ... .. . . .. .. .. . . . . . .. . .... ....... .... ..... ... . .... . .. .. . . . . ... . ... .. . ........ . . . .... ....... ..... . .. . ..... .... . . .. . .... . . ............ . .. . . . . . . . . . .... . ... .. . . . . . .. . . . .. .. . . ........ .. . . . .. . ................... .. . . . . . . . . . . . . . . . . .. . . .......... .. .. ... . .... . . ... .. . . . ............. . ... ............ .. . .. .. . .. . . . .... . . .... .. . . . ....... . . ..... . .. . . . .. ..... ...... .. . . .... . ............ . .. ...... ... .. . ...... . . .... .. . ... ... .. .... ... .. . .. ................. . .. . . . .................... ... ..........
lowQualScore : 3 888 66 3 3 66 11 33 1 1 1 2 5 22 8 8888 6666666 3333 77777 000 3 3333 6 00 88 1 3 0 9 444 4 777 11 4 88888888 4 7 4 6666 4444444 55555 1 99 0 66666 1111 2 4 77 4 4444 4 0 000000000000 4 66 7 7 7 7 7 7 0 0 6 0000 0 000 22 0 0 0 3 3 33 7 0 0 77 33 3 3 33333333 33 0 0 0 55 0 5555555555555555555 00 0 5 0 0 0 0 0 0 5 0 5 0 0 5 0 0 55 0 0 5555555555 55 00 000 5 0000 0 0 000 77 3 3 7 0000000000000 3 000 333333333333 77 3 77 33 0 33 7 7 3 3333 3 7 3333 33 0 0 2 8888888 0 5 22222 2 88 0 2 5 88 55555 888888 88 2 0 8888 0 555555555555 0 88 888888 888 55 0 222222 5 5 8888 88 5 555 555 55 2222 000 00 7 00 77777777777777777 0 55 5 0 5 00000000000000000000 000 5555555555
consensus : GTCAAT-CTAG---CC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAATC-GGCTGCTGT--ATC-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-TTTTTTT--A-A---T-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTTAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAAAAAAA-TCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-GTTTTTT----AATAC---GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTT-ATGTAACCTACANTG-AAAACCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTNGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCCAAAAA-CCGGAA-ATTGAAGANAAA-T-TAA-TCTGGTTGT-AACCTTACAA-T---A--A---CAAGCCTCATATTTTA-AATTTCAA-CCTT--AAATGATAAACCATAATAAANA-TCGGCTGA-TTTATCT-CGATGGAAA-AAGGGGA--TTTTGGG-TTAAA-TGATGTTTTTTTNAN----TTNAAAATNGCCAAA-AAA-CTGGAAA--TTGGAAGAGAAAATATAANTCA--TGT-ATTNTACAATTGAAAACCAGTCCTCA--NNTTTTNAATTTCAAC------C-T---TTAAAT-GA--TC--A-A-TTAATGTTTTTAAACCAG-CAGA----A-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTTAA---TAAAA-GTTG----TTGAAAT-TCTAAGAAAAAG-CTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 ) : GTCAAT-CTAG--GCC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATTTGC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAATC-GGCTGCTGT--ATCCTCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-TTTTTTT--A-A---T-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTTA--TGTANCCTACAATTG--AAAACCAAT-C--TCAAATTTTTAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAATAAAA-TCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATTTTGGGGTAAAA-TGAT-GTTTTTT----ANTAT---GAAAATCGCCAAAAAACT-GGA-AATTG-AAGAAAA--AATATAATTTAATGTANCCTACANT--AAAACCAGTCCGTC-AA-TTTTAAA--------TTTCAA--ATCTACATANTAAAAATCGG-CTGCTGTATCCTCGATGGGAAAATGGGAATTTTGGGTTAAATGATGGTT-TTTTTTAAATAANAAAATCGCCAAAAACTGGAAATTGAAG-AAAAAA-TATAATTTATGTANCCTACAA-TGAAAACAAGCC-TCATATTTTTAAATTTCANTCTTTAAATGAAAACAATAATAAAAATCGGCTGCTGTATCTCGATGGGAAAATGGGAATTTTTNGGGTTAAATGATGTTTTTTAATNCAA---AAATCGCCAAAAAACTGGAA-ATTGAAGAAAAAATATAAATTTAGTTGT-AACCTTACAA-T---A--A---CAAGCCTCATATTTTT-AAATTCA--CCTT--AAACGATNAACCATAATAAAAA-TCGGCTGC-TGTATCT-CGATGGGAA-AATGGGA--TTTTGGG-TTAAA-TGATGTTTTTTTTAA----TTNAAAATCGCCAAA-A---CTGGAAA--TTGGAAGAAAAAATATAATTCA--TGT-ANCCTACAATTGAAAACCAGTCCTCA--ATTTTTAAATTTCAAC------C-T---TTAAAT-GA--TC--A-A-TTAATGTTTTTAA-CCAG-CAGA----A-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGGTCTT---TTTTTTAA---TAAAA-GTTG----TTGAAAN-CCTAAGAAAAAGGCTCCACGATCTTTNNAATACNGTACATCTAAGANCNCCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAA
gi|1 : GTCA-T-CTAG--GCC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA-C-GGCGCCTGT--ATTATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-GTTTTT---A-A---T-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-GTTTTTT----ATTAC---GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT--AAAACCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTACAA-TGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTCAA---AAATCGCCAAAAAACTGGAAGATTAAAGATAAATTATAAATTTGGTTGT-AACCTTACAA-T---ATTA---CAAGCCTCATATTTTTGAAATTCA--CCTT--AAATGATAAACCATAATAAATA-TCGGCTGA-TTTATCT-CGATGGAAA-AA-GGGA--TTTTGGG-TTAAA-TGATGTTTTTTTTAA----TTCAAAATCGGCAAA-A---CAAGGAA--TTGGGAGAGAAAATATAAATCA--TGT-ATTCTACAATTGAAAACCAGTCCTCA--ATTTTTCAATTTCAAT------A-T---TCAAAT-GA--TC--A-A-TTAATGTTTTTAA-CCAG-CAGA----ATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTTAA---TAAAA-AGTG----TTGAAAT-TCTAAGAAAAA-CCTTCACAATCTTTTTATTACA-----------ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGTG----------TATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10 : TTTGGG-TTAAA-TGTTGGTTTTTT-AT----TTGAAAATAGCTAAATA---CTTTAAA--TTG-AAGAAAAAATGTATTTTA--TAT-AATATACAA-TGTAAACCAG-CCTCA--TATGTCAAATTTCAAC------CATTAATTAAAT-GATGTCAGA-A-TTAAAACTTTTCA--CAC-CAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTTAA---TGAAA--TTG----TTAAAa
gi|11 : actaGTCAAT-CTAG---CC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCAT---G--CAAGAAAA-T--ATA------------A-TA--A--AAAATC-GGCTGCTGT--ATC-TCGATGGGAAAATGGGAA-TTTTGGGGTTAA-ATG-AT-GGTTTTTTT--A-A---T-ATAAAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12 : taCCAG-CAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAATA-GGTTGTTAT--ATCTT---------AATGGAAAGATTTG----CAACATG-AT-------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13 : atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--AA--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT---AAAA
gi|14 : TCAAG-CTA-----C--AT-TG-T--TC-GTGCAAAA-CCT-CAAA-CTTAAT--GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-CTCAATGGGAA
gi|15 : gtcaagtcacCAATGCTAA--GCC--AT-TT-T--T--GGGCCTCA-CTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATTC-GGCTGCTGT--AT
gi|16 : GTCAAG-CCAG---CCTTAT-TG-T--TC-GTACAAAA-CCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17 : tctaGTCAAT-CTAG---CC--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAAAT----ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18 : aTTTTAAA--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAATAAAA-ACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATTttgttatatccaatgta
gi|2 : aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAAAA-GGGAATTTTCTG--TTAAATGGTGTTTTTCTACTCAATAAAAATCGCCAAAA---CGGAA-AT-GAAGAAAA----------TAATTGTTAAC--TACAAATGAAA--A---CAAGCCTCATATTTTA-AATTTCAA-CCTTTTAAATGA-AAAACATAATAAAAAATCGGCTGAATTCATCTTCGATGGAAA-AGAAGGAATTTTTTGG-TTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCCAAA-AAA-CTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAAT--AAAAT-AGTC-TCATAATTTTTCAATTCTAATTATATTC-TA--TTATAT-AA--TC--ACACTTAATGTTTTAAAACCAGACAGA----A-TTTCGTT-CCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA-----TACATCTAA---CCCCCCCAg
gi|3 : tcgctcaaagagaaattagagacacgataaAAT-CTGGTAGCC--AT-TT-T--TTTGGGCTTAA-CTT-CAAA-CT-TATTGG---AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAATC-AACTGGCGT--AT-GTTGATGGGAAAATAGG-AATTTT-GGGTTAA-ATG-AT-GTTTTTTTT--A-A---T-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAA-TG--AAAAACATT-C--TCAAA-TTGTAAA--TTTCAACT-TTTTTAAAA-A-CAAT-------T-A-GCATAAAGAAA-TCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G-TTTTT----AATAT---GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTT-ATGTATCCTACAGTG-AAAACCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTT-TTTTTT
gi|4 : gtATCGCCAAAAA-CTGGAA-ATTGAAGAGAAAATTTAA-TCTG--TGT-AATCT-ACAA-T---A--AAAACAAGCCTCATGTTTTA-AATTTCAACCTTT--AAATGATAAAC-ACAATAAAGA-TCGACTGA-TTTTTCT-CGATGGGAAGAAGGGGA--TTTGGGGGTTAAG-TTATGTTTTTTTCAT----ATCAAAATCGCCAAA-AAAACTGGAGA--TTG-AAGAGAAAATATAATTCA--TGT-ATTCTAC----------CAGTC-TCA--TATTTTAAATTTCAACA-----T-T---TTAAATTGA--TT--A-A-TT---GTTCTTAAACCAG-TATA----A-TTTCGTT-CCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTTAA---TAAAGTGTTAGAATTTGAAAT-TTTAAGAAAAAA-CTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAtcaag
gi|5 : GTCAAT-CTAG--GCC--AT-TT-TGTTT-GGTCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--ATC-TCGATGGGAAA-TGGGAA-TTTTAGGGTTAA-ATGTAT-G-TTTTTTT--A-AATAT-G--AAA-ATAGCCAAAG-CTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAAATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAAAAAAA-TCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-GGTTTTT----AAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTT-ATGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6 : taGTCAAT-CTAG---CC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT---G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATC-GGCTGCGGT--ATC-TCGATGGGAAAATGGGAA-TTTTAGGGTTAA-ATG-AT-G-TTTTTTTTAA-A---T-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAAT-G--AAAACCAAT-G--TCAA-TTTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------TG--GCATAAAAAAA-TCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGGTTTTTTAA--AATAC---AAAAATCGCC-CAAAATT-GGA-AATT
gi|7 : taGTCAAT-CTAG---CC--AT-AT-T--T---GACATAA-CCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAATC-GGCTA-TGT--AT-CTCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-G-GTTTTGT--ATA---T-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAA-TTTTAAATGTTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAAAAAAA-ACA-GTCTGCTGTA-T
gi|8 : taGTCAAT-CTAG---CC--AT-AT-T--T----GACAAA-CCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAATC-GGCTACTGTTAATTCTCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-ATGG-TTTTGTT--A-A---TGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAAAT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAAAAAAA-
gi|9 : TCAAT-CTAG---CC--AT-AT-T--TT-AGGCAACA-CCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAATC-GGCTGCTGC--ATC-TCGATGG---------AAATT---------------AT-A-TATATAT--A-A---A-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAAA--TTTTAACC-TTC----AA-a
Alignments
lowQualScore : 2222222 1111 1 222222222222222 1111 1111111 11111 22222 1111 11 333333333333 3333 1 1 1 1 11 1 1 11 1 1 44444444 11 1 333333333 22222 1 1 1 1 1 1 11 4444444444 11 1 22 222 1 1 33333333 111111 111 1 4444444444 11 33 1 1 1 1 1 1 11 1 1 33333 11 11 1 11 1 2222 11 11 66666666666666 1 11 111111 1 2 1 1 2222 11 222 111 11 2222 1 11 33333333333333333 11 1 44444444444444444444 222 4444444444
lowQualScore : 3 555 3 6 44 44 3 3 44 99 333 3 3 33 3 44 555555 2222222 4444 44444 333 3 1111 3 55 3 4 2 5 4 1 2 4 4 4 1 555555555555555 4 4 4 4 5555 4444444 22222 2 66 22222 0000 3 6 66 4 9999 555 444444444444 4 0 5 5 0 5 6 1 8 8 5 9999 8 9 0 0 3 7 88 3 1 6 3 88 3 3 88888888 88 1 5 1 666666666 1 66666 22 1 2 3 5 5 5 1 5 1 5 5 1 88 1 1 1111111111 88 22 1 1 5 33 1 111 3 7 0 3 7 1 99999999 999999 333 3 7777777777 88 6 11 7 5 3 1 3 3 3 2 88 0 0 1 22222 1 1 1 33 3 2 0 33 5 1 33 0 1 3 4444 2 88 33 22 1 55555555555555 0 33 555555 3 0 44 0 0 2 5 6666 33 1 777 777 66 1111 0 77 0 77777777777777777 77 1 1 5 66666666666666666666 111 0000000000
lowQualScore : . ... . . .. .. . . .. .. ... . . .. . .. ...... ....... .... ..... ... . .... . .. . . . . . . . . . . . ............... . . . . .... ....... ..... . .. ..... .... . . .. . .... ... ............ . . . . . . . . . . . .... . . . . . . .. . . . . .. . . ........ .. . . . ......... . ..... .. . . . . . . . . . . . . .. . . .......... .. .. . . . .. . ... . . . . . . ........ ...... ... . .......... .. . .. . . . . . . . . .. . . . ..... . . . .. . . . .. . . .. . . . .... . .. .. .. . .............. . .. ...... . . .. . . . . .... .. . ... ... .. .... . .. . ................. .. . . . .................... ... ..........
lowQualScore : 3 888 3 7 66 66 3 3 66 11 444 1 1 77 1 22 555555 6666666 3333 77777 000 3 5555 6 00 6 0 9 4 6 1 0 4 4 4 7 999999999999999 4 7 4 4 6666 4444444 55555 2 99 66666 1111 2 9 77 4 4444 333 222222222222 4 6 7 7 7 7 7 0 0 0 6 0000 0 0 0 0 3 3 33 3 0 7 3 33 3 3 33333333 33 0 5 0 555555555 0 00000 00 0 5 0 0 0 5 0 5 0 5 5 0 55 0 0 5555555555 55 00 0 0 0 00 0 555 3 3 7 3 3 0 00000000 333333 000 3 0000000000 33 7 77 3 0 3 0 3 3 3 0 33 0 0 2 00000 0 0 0 22 5 5 2 88 0 0 88 0 0 2 5555 5 22 88 00 0 55555555555555 0 88 888888 2 0 55 0 0 5 5 8888 88 0 555 555 55 2222 0 00 7 33333333333333333 55 0 0 5 00000000000000000000 000 5555555555
consensus : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-GTTTTTTAA--AATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACCT-TTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGAT-GGAAAAAGGGGA--TTT-TGGGTT-AAATGATGTTTTTTT----NATTTNAAAATNGCC-AAAANACTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAATTGAAAACCAGTCCTC--ANNTTTTNAATTTCAA------C-C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 ) : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTTAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-GTTTTTT----AATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTNGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATCTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC--TTAAATGATAAACCATAAT-AAANATCGGCTG-ATTTATC-TCGAT-GGAAAAAGGGGA--TTT-TGGGTT-AAATGATGTTTTTTT----NANTTNAAAATNGCC-AAAAAACTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAATTGAAAACCAGTCCTC--ANNTTTTNAATTTCAA------C-C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAG-CAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-GCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1 : GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-GTTTTTT----ATTAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAATTC--ACC--TTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGAT-GGAAAAA-GGGA--TTT-TGGGTT-AAATGATGTTTTTTT----TAATTCAAAATCGGC-AAAACA--AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTC--AATTTTTCAATTTCAA------T-A-T---TCAAA-TGA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10 : TT-TGGGTT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCT--AAATACTTTAA--ATT-GAAGAAAAAATGTATTT--TATA-TAATATACAA-TGTAAACCAG-CCTC--ATATGTCAAATTTCAA------C-CATTAATTAAA-TGATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11 : actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12 : taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13 : atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--AA--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14 : GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15 : gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16 : GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17 : tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18 : aTTTTAAA--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2 : aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGA-AAAACATAATAAAAAATCGGCTGAATTCATCTTCGAT-GGAAAAGAAGGAATTTT-TTGGTTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCC-AAAAAACTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAAT--AAAA-TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATA-TAA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA-----TACATCTAA---CCCCCCCAtg
gi|3 : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AAA--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G-TTTTT----AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4 : gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACCT-TTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATT-GAAGAGAAAATATAATT--CATG-TATTCT----------ACCAGT-CTC--ATATTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-T---TG-TTCTTAAACCAG-TATAA-TTTCG-TTCCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5 : GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAAATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-GGTTTTTAA--AATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6 : taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGGTTTTTTAA--AATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAA-TTTTAAATGTTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAAAT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9 : TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAAA--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa
Alignments
lowQualScore : 2222222 1111 1 222222222222222 1111 1111111 11111 22222 1111 11 333333333333 11 1 1 1 1 11 1 1 11 1 1 44444444 11 1 333333333 22222 1 1 1 1 1 1 11 4444444444 11 1 11 222 22 1 333333333 111 111 555555555555 11 22 1 1 1 1 1 11 1 1 222222 11 11 1 11 1 2222 1111 666666666666 1 11 111111 1 1 1 1 2222 11 222 111 11 2222 1 11 33333333333333333 11 1 44444444444444444444 222 4444444444
lowQualScore : 3 555 3 6 44 44 3 3 44 99 333 3 3 33 3 44 555555 2222222 4444 44444 333 3 1111 3 55 3 4 2 5 4 1 2 4 4 4 1 555555555555555 4 4 4 4 5555 4444444 22222 2 66 22222 0000 3 9 4 00 4 9999 555 444444444444 4 0 5 5 0 5 6 1 8 8 11 3333 8 9 0 0 3 7 88 3 1 6 3 88 3 3 88888888 88 1 5 1 666666666 1 66666 22 1 1 1 5 5 5 1 5 1 5 5 1 88 1 1 1111111111 88 22 1 1 5 88 1 111 00 0 3 7 1 000000000 222 6 333 111111111111 88 6 00 3 1 3 3 3 3 6 88 0 0 1 333333 1 1 33 1 2 0 33 5 1 33 0 1 3 4444 2 888 5555 1 777777777777 0 33 555555 3 0 44 5 0 2 5 6666 33 1 777 777 66 1111 0 44 0 77777777777777777 77 1 1 5 66666666666666666666 111 0000000000
lowQualScore : . ... . . .. .. . . .. .. ... . . .. . .. ...... ....... .... ..... ... . .... . .. . . . . . . . . . . . ............... . . . . .... ....... ..... . .. ..... .... . . . .. . .... ... ............ . . . . . . . . . . .. .... . . . . . . .. . . . . .. . . ........ .. . . . ......... . ..... .. . . . . . . . . . . . . .. . . .......... .. .. . . . .. . ... .. . . . . ......... ... . ... ............ .. . .. . . . . . . . .. . . . ...... . . .. . . . .. . . .. . . . .... . ... .... . ............ . .. ...... . . .. . . . . .... .. . ... ... .. .... . .. . ................. .. . . . .................... ... ..........
lowQualScore : 3 888 3 7 66 66 3 3 66 11 444 1 1 77 1 22 555555 6666666 3333 77777 000 3 5555 6 00 6 0 9 4 6 1 0 4 4 4 7 999999999999999 4 7 4 4 6666 4444444 55555 2 99 66666 1111 2 2 4 66 4 4444 333 222222222222 4 6 7 7 7 7 7 0 0 0 00 6666 0 0 0 0 3 3 33 3 0 7 3 33 3 3 33333333 33 0 5 0 555555555 0 00000 00 0 0 0 0 0 5 0 5 0 5 5 0 55 0 0 5555555555 55 00 0 0 0 00 0 555 77 7 3 3 0 000000000 333 7 000 333333333333 33 7 77 3 0 3 3 3 3 7 33 0 0 2 000000 0 0 22 0 5 2 88 0 0 88 0 0 2 5555 5 222 8888 0 555555555555 0 88 888888 2 0 55 5 0 5 5 8888 88 0 555 555 55 2222 0 33 7 33333333333333333 55 0 0 5 00000000000000000000 000 5555555555
consensus : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCCAAAAA-CCGGAA-ATTGAAGANAAA--TTA---ATTTGGTTGTAACCTTACAA-T---A--A---CAAGCCTCATATTTT--AAATTTCAACCTTT-AAATGATAAAC-ATAATAAANA-TCGGCTGA-TTTATCT-CGAT-GGAAAAAGGGGA--TTT-TGGGTTAAA-TGATGTTTTTTTNA----TTTNAAAATNGCC-AAAANACTGGAAA--TTGGAAGAGAAAATATAANTCA--TGT-ATTNTACAATTGAAAACCAGTCCTCATA--TTTTNAATTTCAAC------C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 ) : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCCAAAAA-CCGGAA-ATTGAAGANAAA--TTA---ATTTGGTTGTAACCTTACAA-T---A--A---CAAGCCTCATATTTT--AAATTTCAACCTTT-AAATGATAAAC-ATAATAAANA-TCGGCTGA-TTTATCT-CGAT-GGAAAAAGGGGA--TTT-TGGGTTAAA-TGATGTTTTTTTNA----TTTNAAAATNGCC-AAAANACTGGAAA--TTGGAAGAGAAAATATAANTCA--TGT-ATTNTACAATTGAAAACCAGTCCTCANN--TTTTNAATTTCAAC------C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1 : GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTACAA-TGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTCAA---AAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTACAA-T---ATTA---CAAGCCTCATATTTTTGAAATTC--ACCTT--AAATGATAAACCATAATAAATA-TCGGCTGA-TTTATCT-CGAT-GGAAAAAGGG-A--TTT-TGGGTTAAA-TGATGTTTTTTTTA----ATTCAAAATCGGC-AAAACA--AGGAA--TTGGGAGAGAAAATATAAATCA--TGT-ATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAAT------A-T---TCAAA-TGA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10 : TT-TGGGTTAAA-TGTTGGTTTTTT-A----TTTGAAAATAGCT--AAATACTTTAAA--TT-GAAGAAAAAATGTATTTTA--TAT-AATATACAA-TGTAAACCAG-CCTCATA--TGTCAAATTTCAAC------CATTAATTAAA-TGATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11 : actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12 : taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13 : atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14 : GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15 : gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16 : GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17 : tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18 : aTTTTAA-A--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2 : aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCCAAAA---CGGAA-AT-GAAGAAAA----TA---ATT--GTT--AAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAAC-ATAATAAAAAATCGGCTGAATTCATCTTCGAT-GGAAAAGAAGGAATTTT-TTGGTTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCC-AAAAAACTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAAT--AAAAT-AGTC-TCATAATTTTTCAATTCTAATTATATTC-TA--TTATA-TAA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA-----TACATCTAA---CCCCCCCAtg
gi|3 : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4 : gtATCGCCAAAAA-CTGGAA-ATTGAAGAGAAAATTTA---ATCTG--TGTAATCT-ACAA-T---A--AAAACAAGCCTCATGTTTT--AAATTTCAACCTTT-AAATGATAAAC-ACAATAAAGA-TCGACTGA-TTTTTCT-CGATGGGAAGAAGGGGA--TTTGGGGGTTAAG-TTATGTTTTTTTCA----TATCAAAATCGCCAAAAAAACTGGAGA--TT-GAAGAGAAAATATAATTCA--TGT-ATTCT----------ACCAGT-CTCATA--TTTTAAATTTCAACA-----T-T---TTAAATTGA--TT--A-A-T---TG-TTCTTAAACCAG-TATAA-TTTCG-TTCCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5 : GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6 : taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9 : TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa
Alignments
lowQualScore : 2222222 1111 1 222222222222222 1111 1111111 11111 22222 1111 11 333333333333 11 1 1 1 1 11 1 1 11 1 1 44444444 11 1 333333333 22222 1 1 1 1 1 1 11 4444444444 11 1 11 222 1 1 33333333 11111 111 1 4444444444 11 1 1 1 1 1 1 1 11 1 1 33333 1 11 11 1 222 11 11 66666666666666 1 11 111111 1 1 1 1 2222 11 222 111 11 2222 1 11 33333333333333333 11 1 44444444444444444444 222 4444444444
lowQualScore : 3 555 3 6 44 44 3 3 44 99 333 3 3 33 3 44 555555 2222222 4444 44444 333 3 1111 3 55 3 4 2 5 4 1 2 4 4 4 1 555555555555555 4 4 4 4 5555 4444444 22222 2 66 22222 0000 3 9 4 00 4 9999 555 444444444444 4 0 5 5 0 5 6 1 8 8 11 3333 8 9 0 0 3 7 88 3 1 6 3 88 3 3 88888888 88 1 5 1 666666666 1 66666 22 1 1 1 5 5 5 1 5 1 5 5 1 88 1 1 1111111111 88 22 1 1 5 88 1 111 3 7 0 3 7 1 99999999 88888 333 3 7777777777 88 7 7 3 3 3 1 3 3 3 2 88 0 0 1 22222 1 1 0 44 2 0 33 99 1 33 0 1 3 777 2 88 33 1 55555555555555 0 33 555555 3 0 44 5 0 2 5 6666 33 1 777 777 66 1111 0 44 0 77777777777777777 77 1 1 5 66666666666666666666 111 0000000000
lowQualScore : . ... . . .. .. . . .. .. ... . . .. . .. ...... ....... .... ..... ... . .... . .. . . . . . . . . . . . ............... . . . . .... ....... ..... . .. ..... .... . . . .. . .... ... ............ . . . . . . . . . . .. .... . . . . . . .. . . . . .. . . ........ .. . . . ......... . ..... .. . . . . . . . . . . . . .. . . .......... .. .. . . . .. . ... . . . . . . ........ ..... ... . .......... .. . . . . . . . . . . .. . . . ..... . . . .. . . .. .. . .. . . . ... . .. .. . .............. . .. ...... . . .. . . . . .... .. . ... ... .. .... . .. . ................. .. . . . .................... ... ..........
lowQualScore : 3 888 3 7 66 66 3 3 66 11 444 1 1 77 1 22 555555 6666666 3333 77777 000 3 5555 6 00 6 0 9 4 6 1 0 4 4 4 7 999999999999999 4 7 4 4 6666 4444444 55555 2 99 66666 1111 2 2 4 66 4 4444 333 222222222222 4 6 7 7 7 7 7 0 0 0 00 6666 0 0 0 0 3 3 33 3 0 7 3 33 3 3 33333333 33 0 5 0 555555555 0 00000 00 0 0 0 0 0 5 0 5 0 5 5 0 55 0 0 5555555555 55 00 0 0 0 00 0 555 3 3 7 3 3 0 00000000 77777 000 3 0000000000 33 3 3 3 3 3 0 3 3 3 0 33 0 0 2 00000 0 0 0 22 5 2 88 00 0 88 0 0 2 555 5 22 88 0 55555555555555 0 88 888888 2 0 55 5 0 5 5 8888 88 0 555 555 55 2222 0 33 7 33333333333333333 55 0 0 5 00000000000000000000 000 5555555555
consensus : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGAT-GGAAAAAGGGGA--TTT-TGGGTT-AAATGATGTTTTTTT----NATTTNAAAATNGCC-AAAANACTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAAT-GAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 ) : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGAT-GGAAAAAGGGGA--TTT-TGGGTT-AAATGATGTTTTTTT----NATTTNAAAATNGCC-AAAANACTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAATTGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1 : GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAA-TTCA--C-CTTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGAT-GGAAAAA-GGGA--TTT-TGGGTT-AAATGATGTTTTTTT----TAATTCAAAATCGGC-AAAACA--AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAA------T-A-T---TCAAA-TGA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10 : TT-TGGGTT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCT-AAA-TACTTTAA--ATTG-AAGAAAAAATGTATTT--TATA-TAATATACAAT-GTAAACCAG-CCTCATA--TGTCAAATTTCAA------C-CATTAATTAAA-TGATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11 : actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12 : taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13 : atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14 : GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15 : gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16 : GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17 : tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18 : aTTTTAA-A--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2 : aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAA-CATAATAAAAAATCGGCTGAATTCATCTTCGAT-GGAAAAGAAGGAATTTT-TTGGTTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCC-AAAAAACTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAAT--AAAA-TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATA-TAA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA-----TACATCTAA---CCCCCCCAtg
gi|3 : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4 : gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACC-TTTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATT-GAAGAGAAAATATAATT--CATG-TATTCT----------ACCAGT-CTCATA--TTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-T---TG-TTCTTAAACCAG-TATAA-TTTCG-TTCCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5 : GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6 : taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9 : TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa
Alignments
lowQualScore : 2222222 1111 1 222222222222222 1111 1111111 11111 22222 1111 11 333333333333 11 1 1 1 1 11 1 1 11 1 1 44444444 11 1 333333333 22222 1 1 1 1 1 1 11 4444444444 11 1 11 222 1 1 33333333 11111 111 1 4444444444 11 1 1 1 1 1 1 1 11 1 1 33333 11 11 1 11 1 1111111111 11 66666666666666 1 11 111111 1 1 1 2222 11 222 111 11 2222 1 11 33333333333333333 11 1 44444444444444444444 222 4444444444
lowQualScore : 3 555 3 6 44 44 3 3 44 99 333 3 3 33 3 44 555555 2222222 4444 44444 333 3 1111 3 55 3 4 2 5 4 1 2 4 4 4 1 555555555555555 4 4 4 4 5555 4444444 22222 2 66 22222 0000 3 9 4 00 4 9999 555 444444444444 4 0 5 5 0 5 6 1 8 8 11 3333 8 9 0 0 3 7 88 3 1 6 3 88 3 3 88888888 88 1 5 1 666666666 1 66666 22 1 1 1 5 5 5 1 5 1 5 5 1 88 1 1 1111111111 88 22 1 1 5 88 1 111 3 7 0 3 7 1 99999999 88888 333 3 7777777777 88 7 7 3 3 3 1 3 3 3 2 88 0 0 1 22222 1 1 44 22 0 33 9 1 33 0 1 6666666666 888 33 1 55555555555555 0 33 555555 333 0 44 5 0 2 3 3 6666 33 1 777 777 66 1111 0 44 0 77777777777777777 77 1 1 5 66666666666666666666 111 0000000000
lowQualScore : . ... . . .. .. . . .. .. ... . . .. . .. ...... ....... .... ..... ... . .... . .. . . . . . . . . . . . ............... . . . . .... ....... ..... . .. ..... .... . . . .. . .... ... ............ . . . . . . . . . . .. .... . . . . . . .. . . . . .. . . ........ .. . . . ......... . ..... .. . . . . . . . . . . . . .. . . .......... .. .. . . . .. . ... . . . . . . ........ ..... ... . .......... .. . . . . . . . . . . .. . . . ..... . . .. .. . .. . . .. . . .......... ... .. . .............. . .. ...... ... . .. . . . . . .... .. . ... ... .. .... . .. . ................. .. . . . .................... ... ..........
lowQualScore : 3 888 3 7 66 66 3 3 66 11 444 1 1 77 1 22 555555 6666666 3333 77777 000 3 5555 6 00 6 0 9 4 6 1 0 4 4 4 7 999999999999999 4 7 4 4 6666 4444444 55555 2 99 66666 1111 2 2 4 66 4 4444 333 222222222222 4 6 7 7 7 7 7 0 0 0 00 6666 0 0 0 0 3 3 33 3 0 7 3 33 3 3 33333333 33 0 5 0 555555555 0 00000 00 0 0 0 0 0 5 0 5 0 5 5 0 55 0 0 5555555555 55 00 0 0 0 00 0 555 3 3 7 3 3 0 00000000 77777 000 3 0000000000 33 3 3 3 3 3 0 3 3 3 0 33 0 0 2 00000 0 0 22 55 2 88 0 0 88 0 0 8888888888 222 88 0 55555555555555 0 88 888888 888 0 55 5 0 5 2 2 8888 88 0 555 555 55 2222 0 33 7 33333333333333333 55 0 0 5 00000000000000000000 000 5555555555
consensus : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 ) : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1 : GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAA-TTCA--C-CTTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGATGGAAA-AA-GGGA--TTTTGGG-TT-AAATGATGTTTTTTT----TAATTCAAAATCGGCAAAACA---AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAA------T-A-T---TCAAAT-GA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10 : TTTGGG-TT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCTAAA-TA-CTTTAA--ATTG-AAGAAAAAATGTATTT--TATA-TAATATACAA-TGTAAACCAG-CCTCATA--TGTCAAATTTCAA------C-CATTAATTAAAT-GATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11 : actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12 : taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13 : atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14 : GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15 : gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16 : GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17 : tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18 : aTTTTAA-A--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2 : aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAA-CATAATAAAAAATCGGCTGAATTCATCTTCGATGGAAA-AGAAGGAATTTTTTGG-TTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCCAAAAAA-CTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAA-TAAAA--TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATAT-AA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA---T--ACATCTAA---CCCCCCCAtg
gi|3 : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4 : gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACC-TTTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATTG-AAGAGAAAATATAATT--CATG-TATTCTAC----------CAGTC-TCATA--TTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-TT---G-TTCTTAAACCAG-TATAA-TTTCGTT-CCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5 : GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6 : taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9 : TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa
Alignments
lowQualScore : 2222222 1111 1 222222222222222 1111 1111111 11111 22222 1111 11 333333333333 11 1 1 1 1 11 1 1 11 1 1 44444444 11 1 333333333 22222 1 1 1 1 1 1 11 4444444444 11 1 11 222 1 1 33333333 11111 111 1 4444444444 11 1 1 1 1 1 1 1 11 1 1 33333 11 11 1 11 1 1111111111 11 66666666666666 1 11 111111 1 1 1 2222 11 222 111 11 2222 1 11 33333333333333333 11 1 44444444444444444444 222 4444444444
lowQualScore : 3 555 3 6 44 44 3 3 44 99 333 3 3 33 3 44 555555 2222222 4444 44444 333 3 1111 3 55 3 4 2 5 4 1 2 4 4 4 1 555555555555555 4 4 4 4 5555 4444444 22222 2 66 22222 0000 3 9 4 00 4 9999 555 444444444444 4 0 5 5 0 5 6 1 8 8 11 3333 8 9 0 0 3 7 88 3 1 6 3 88 3 3 88888888 88 1 5 1 666666666 1 66666 22 1 1 1 5 5 5 1 5 1 5 5 1 88 1 1 1111111111 88 22 1 1 5 88 1 111 3 7 0 3 7 1 99999999 88888 333 3 7777777777 88 7 7 3 3 3 1 3 3 3 2 88 0 0 1 22222 1 1 44 22 0 33 9 1 33 0 1 6666666666 888 33 1 55555555555555 0 33 555555 333 0 44 5 0 2 3 3 6666 33 1 777 777 66 1111 0 44 0 77777777777777777 77 1 1 5 66666666666666666666 111 0000000000
lowQualScore : . ... . . .. .. . . .. .. ... . . .. . .. ...... ....... .... ..... ... . .... . .. . . . . . . . . . . . ............... . . . . .... ....... ..... . .. ..... .... . . . .. . .... ... ............ . . . . . . . . . . .. .... . . . . . . .. . . . . .. . . ........ .. . . . ......... . ..... .. . . . . . . . . . . . . .. . . .......... .. .. . . . .. . ... . . . . . . ........ ..... ... . .......... .. . . . . . . . . . . .. . . . ..... . . .. .. . .. . . .. . . .......... ... .. . .............. . .. ...... ... . .. . . . . . .... .. . ... ... .. .... . .. . ................. .. . . . .................... ... ..........
lowQualScore : 3 888 3 7 66 66 3 3 66 11 444 1 1 77 1 22 555555 6666666 3333 77777 000 3 5555 6 00 6 0 9 4 6 1 0 4 4 4 7 999999999999999 4 7 4 4 6666 4444444 55555 2 99 66666 1111 2 2 4 66 4 4444 333 222222222222 4 6 7 7 7 7 7 0 0 0 00 6666 0 0 0 0 3 3 33 3 0 7 3 33 3 3 33333333 33 0 5 0 555555555 0 00000 00 0 0 0 0 0 5 0 5 0 5 5 0 55 0 0 5555555555 55 00 0 0 0 00 0 555 3 3 7 3 3 0 00000000 77777 000 3 0000000000 33 3 3 3 3 3 0 3 3 3 0 33 0 0 2 00000 0 0 22 55 2 88 0 0 88 0 0 8888888888 222 88 0 55555555555555 0 88 888888 888 0 55 5 0 5 2 2 8888 88 0 555 555 55 2222 0 33 7 33333333333333333 55 0 0 5 00000000000000000000 000 5555555555
consensus : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 ) : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1 : GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAA-TTCA--C-CTTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGATGGAAA-AA-GGGA--TTTTGGG-TT-AAATGATGTTTTTTT----TAATTCAAAATCGGCAAAACA---AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAA------T-A-T---TCAAAT-GA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10 : TTTGGG-TT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCTAAA-TA-CTTTAA--ATTG-AAGAAAAAATGTATTT--TATA-TAATATACAA-TGTAAACCAG-CCTCATA--TGTCAAATTTCAA------C-CATTAATTAAAT-GATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11 : actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12 : taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13 : atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14 : GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15 : gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16 : GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17 : tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18 : aTTTTAA-A--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2 : aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAA-CATAATAAAAAATCGGCTGAATTCATCTTCGATGGAAA-AGAAGGAATTTTTTGG-TTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCCAAAAAA-CTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAA-TAAAA--TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATAT-AA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA---T--ACATCTAA---CCCCCCCAtg
gi|3 : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4 : gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACC-TTTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATTG-AAGAGAAAATATAATT--CATG-TATTCTAC----------CAGTC-TCATA--TTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-TT---G-TTCTTAAACCAG-TATAA-TTTCGTT-CCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5 : GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6 : taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9 : TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa
blockSeqs : G GGT A G TA TT A G GT TT TTA T A A . . TTTTAT TGCGAT TAC ATACC CAA A TTAT C TA T . G A A G A C T G T TTTAAATATG T C A . TGAA CACCCCA CAGAA C TC TGAC CTG A T T TT A TTAA AC AACACCATAA T . T A A G T G TT TTAA A G G . T A AG . G G G . A C TATCAGCC TG A . G . T . GG T T C C C . A A C . . A . T A . . CT G T . . T AAT . A . T A AATTT TGT CT A GAAAA . T A T . A A A T G A AT G A T AAAAA G A AA AC AG A T CA T A AATGTAAAC CC AT A TTATATTCTA T TG AGAA AAA C CA A . C T T ACT TA T G AAA TG GAAT A GG TACTGTACATCTAAGAC CC C A T TCGAGGTTATGATATAAGTA GTA GTGTTTGTGT
blockSeqs : . . . . . . . . . T CT . . A . . TTT TTAG CT TAG AAA . AA . . . . A A A G A . . . T TTAAATATG . T C . AA . . C . TGA C A C . T . . GA CAACT . . . . . T . . . TAAA . . . . . . . . A G . . . . . . . . . . G T GT T . AAAAA . T A . . . G . . . G . . . G C A G AA C . . G . . A AATAAAA TC . C CCATTAA . . ACAC AAT . AA A . C T T GAC . G . . G . . A TACATCTAA
blockSeqs : . . . . . . . . . C CC . . T . . ATT ATG T TAC CAA . AT . . . . G A A G A . . . T TTAATATA . C A . . . . A . TG C A C . . . . A TGTG . . . . . A . . . TAAA . . . . . . A . C C T C . . T . . C . TC . A CATT . . AA . . TA . . . . . GT . T . . . . .
blockSeqs : . . . . . . . . . C AA . . A . . AAT TG C TTC CAG . AT . . . . G . A G A . . . T TTTAATAT . A A . . . . A . TG G A A . . . . A CAA . . . . . A . . . A .
blockSeqs : . . . . . . . . . T CT . . A . . AAT TG T TAT CAG . AT . . . . T . A G A . . . G GTTAATGA . A C . . . . T . TG G A T . . . . A CAA . . . . .
blockSeqs : . . . . . . . . . T AA . . T . . TTT TA C TAC CAA . AT . . . . T . . . T . . . G GTATATA . T A . . . . T . TG C . T . . . . A TAG . . . .
blockSeqs : . . . . . . . . . T TT . . A . . TTT TT T TAC CAA . A . . . . . . . . . . . . T ATAAAA . C C . . . . T . TA C . . . . . . A TGG .
blockSeqs : . . . . . . . . . T CT . . A . . TTT TG T TAC . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . CT . . A . . TTT TG T T . . . . . . .
blockSeqs : . . . . . . . . . . AT . . C . . AT TG T . . . . . . .
blockSeqs : . . . . . . . . . . CA . . A . . AT TG . . . .
blockSeqs : AA . . . . . . . .
blockSeqCons : A* ** TG***** TTAATATA******* TG*** C*** TAG********* TAAA
originalCons : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
finalCons : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTA-ATT-GC--AACAGAAATGATTT---ATTGATTATTCATG-----CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTTTTAATATA-------AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATG---AAAACCAATC---TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGATTAG---------CATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Alignments
lowQualScore : 2 222222 1111 1111111 11111 11 1111 11 111111111111 11 1 1 1 1 11 1 1 11 1 1 44444444 11 1 333333333 22222 1 1 1 1 1 1 11 4444444444 11 1 11 222 1 1 33333333 11111 111 1 4444444444 11 1 1 1 1 1 1 1 11 1 1 33333 11 11 1 11 1 1111111111 11 66666666666666 1 11 111111 1 1 1 2222 11 222 111 11 2222 1 11 33333333333333333 11 1 44444444444444444444 222 4444444444
lowQualScore : 3 555 3 6 44 44 3 3 44 99 00 3 3 3 33 3 44 2 5555 77 6666 4444 44444 333 3 9999 3 55 3 4 2 0 1 2 4 4 7777 000000 777 4 4 4 5555 4444444 22222 2 66 5 11 0000 3 9 4 00 4 9999 555 0 999999999999 4 0 5 5 0 5 6 1 8 8 11 3333 8 9 0 0 3 7 88 3 1 6 3 88 3 3 88888888 88 1 5 1 666666666 1 66666 22 1 1 1 5 5 5 1 5 1 5 5 1 88 1 1 1111111111 88 22 1 1 5 88 1 111 3 7 0 3 7 1 99999999 88888 333 3 7777777777 88 7 7 3 3 3 1 3 3 3 2 88 0 0 1 22222 1 1 44 22 0 33 9 1 33 0 1 6666666666 888 33 1 55555555555555 0 33 555555 333 0 44 5 0 2 3 3 6666 33 1 777 777 66 1111 0 44 0 77777777777777777 77 1 1 5 66666666666666666666 111 0000000000
lowQualScore : . ... . . .. .. . . .. .. .. . . . .. . .. . .... .. .... .... ..... ... . .... . .. . . . . . . . . .... ...... ... . . . .... ....... ..... . .. . .. .... . . . .. . .... ... . ............ . . . . . . . . . . .. .... . . . . . . .. . . . . .. . . ........ .. . . . ......... . ..... .. . . . . . . . . . . . . .. . . .......... .. .. . . . .. . ... . . . . . . ........ ..... ... . .......... .. . . . . . . . . . . .. . . . ..... . . .. .. . .. . . .. . . .......... ... .. . .............. . .. ...... ... . .. . . . . . .... .. . ... ... .. .... . .. . ................. .. . . . .................... ... ..........
lowQualScore : 3 888 3 7 66 66 3 3 66 11 33 1 1 1 77 1 22 8 8888 33 5555 3333 77777 000 3 3333 6 00 6 0 9 9 9 0 4 4 9999 222222 888 7 4 4 6666 4444444 55555 2 99 0 99 1111 2 2 4 66 4 4444 333 3 333333333333 4 6 7 7 7 7 7 0 0 0 00 6666 0 0 0 0 3 3 33 3 0 7 3 33 3 3 33333333 33 0 5 0 555555555 0 00000 00 0 0 0 0 0 5 0 5 0 5 5 0 55 0 0 5555555555 55 00 0 0 0 00 0 555 3 3 7 3 3 0 00000000 77777 000 3 0000000000 33 3 3 3 3 3 0 3 3 3 0 33 0 0 2 00000 0 0 22 55 2 88 0 0 88 0 0 8888888888 222 88 0 55555555555555 0 88 888888 888 0 55 5 0 5 2 2 8888 88 0 555 555 55 2222 0 33 7 33333333333333333 55 0 0 5 00000000000000000000 000 5555555555
consensus : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT--GCAA----GAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-AT-G-TTTTT-TT--AATATAAAA---ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAAT-G--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGATCA-G--C-------ATAA-AAAAATCG-G-CTGCTGT-ATCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 ) : GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT--GCAA----GAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-TTTTT-TT--AATATAAAA---ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAAT-G--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGATTA-G--C-------ATAA-AAAAATCG-G-CTGCTGT-ATCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1 : GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CATT-GCAA----GAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-GTTTT-T----A-ATAAAA---AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGATTAAG--C-------ATAA-AAAA-TCGAG-GT-CTGT-ATCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAA-TTCA--C-CTTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGATGGAAA-AA-GGGA--TTTTGGG-TT-AAATGATGTTTTTTT----TAATTCAAAATCGGCAAAACA---AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAA------T-A-T---TCAAAT-GA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10 : TTTGGG-TT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCTAAA-TA-CTTTAA--ATTG-AAGAAAAAATGTATTT--TATA-TAATATACAA-TGTAAACCAG-CCTCATA--TGTCAAATTTCAA------C-CATTAATTAAAT-GATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11 : actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCAT--GCAA----GAAAA-T--ATA------------A-TA--A--AAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGG-TTTTT-TT--AATATAAAA---ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12 : taCCAG-CAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCAT--GCAA----GATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT---------------------A---ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13 : atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAATCA-A--C-------ATAATAAAAACCG-G-CTGCTGT-ATCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14 : GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAAAA-CCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCAT--ACAA----GACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15 : gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCTCA-CTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT-----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16 : GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAAAA-CCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT--TCAA----GATAA-C--ATA-TTC-CAAAAAGA-T
gi|17 : tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAAAT----ATTGGTTATTCAT--GCA------GAAA-T--ATg
gi|18 : aTTTTAA-A--TTTTAATTATGT----AA-A-TGATCA-A--C-------ACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2 : aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAA-CATAATAAAAAATCGGCTGAATTCATCTTCGATGGAAA-AGAAGGAATTTTTTGG-TTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCCAAAAAA-CTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAA-TAAAA--TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATAT-AA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA---T--ACATCTAA---CCCCCCCAtg
gi|3 : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTTAA-CTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATTTCTAAT--GCAA----GAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGG-AATTTT-GGGTTAA-ATG-AT-GTTTTTT-TT--AATATAAAT---ATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAATTA-G--C-------ATAA-AGAAATCG-G-CTCCTGT-ATATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4 : gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACC-TTTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATTG-AAGAGAAAATATAATT--CATG-TATTCTAC----------CAGTC-TCATA--TTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-TT---G-TTCTTAAACCAG-TATAA-TTTCGTT-CCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5 : GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCATTAGCAA----GAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-G-TTTTT-TTA-AATATGAAA---ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAAT-GACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGATTGTG--C-------ATAA-AAAAATCG-G-CTG-TGT-ATCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6 : taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT--GCAA----GAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-G-TTTTT-TTTAAATATGAAA---ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAAT-G--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGATTG-G--C-------ATAA-AAAAATCG-G-CTGCTGT-ATCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACATAA-CCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT--GCGA----GAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-G-GTTTT-GT---ATATAAAA---AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAAT-G--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGA-CA-A--CACCATAAATAA-AAAAAACA-GTCTGCTGT-AT
gi|8 : taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACAAA-CCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCAT--GCGATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-G-GTTTTGTT--AATG-AAAA---ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAAT-GA-AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGATCA-ACTC-------ATAA-AAAAA
gi|9 : TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAACA-CCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT--GCAA----GAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT-----------AT--AT-A-T----------ATATAAAATAAATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------C-------ATAA-AAAAAa