lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555                                   
lowQualScore                  :          2     222              11                   555555555555                         333333333333                                            22     3333333333333333                  1                   111    44444444444444444     333              2      1111                                             22222        3333333333333333333   11                             2222222222      222                   555555555555555                        1                       1111            44444444444444444444          11             222222    1111                         33333333       1111     33333333           33333333          11111111     8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888          1          222222                 22             222222                            22222222222                            11111111                    333333333333   11             22222222222222222222                333333333333                                   222222222222                  333333333333333                              3333333333333333            11            2222222222    0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000         222222222         2222222222         2222222                       3333333333333                               3333333333333333         222      555555555555555555555555555               2222                  22          222            11         11111111111111111                 111         222222   1    333333333333       5555555   2       1      3333333333     11       111    555555555               33                11111111111111111111111111111111111111111111111111111111111111111111111111111111111111                                   
lowQualScore                  :          6     555 55   4  4 55 11    0   4   4      888888888888   66  0 5    777        555555555555        3  44  55555   7777     3  55 3     11 3   5555555555555555             0  4 5    4          3   333    99999999999999999     555       666  3 3      1111   3 999999     3 88888      9  44   5       55555        1111111111111111111   11       3 6 555  8888  2 66   8888888888   4  111 4 33 88888888   2 333333333333333 222   2  666           3           999999   2  2222 55  2  2 2 33333333333333333333     1  2 11  444  55    666666    4444     5555  33  777       22222222  2  4 3333   2 11111111 2   2     66666666 5    5   33333333  2  8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5    9   1   5    2 888888     66666  2 33 33  2 2    2   666666 2  2  1   4444    2    2   22222222222  8888  2 2 4   33 66       22222222    5     2  2      888888888888   66 6  2 2   55 22222222222222222222  2 2    5 2  2 111111111111 2 88  2 4444 22  99999999   4     888888888888 66 2   2 2 2 77  000000000000000  2  666   33  2 2 2 88    2  4444444444444444 666        88   44    2  5555555555    6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666  2 333  000000000  2  22  0000000000 5       2222222  66 33  2 33  5   2   3333333333333    3 3 3 9     77   3  7      1111111111111111    44 3 000 3    000000000000000000000000000   4   55      0000 666   3  44      55     3    222  55 4 0    44  99     88888888888888888  4  5  66  77 5 000 5 1     333333   3    666666666666 7     5555555   4       3      7777777777     88    7  888    222222222   4           55  6          77 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666  6                  6        6    
lowQualScore                  :          .     ... ..   .  . .. ..    .   .   .      ............   ..  . .    ...        ............        .  ..  .....   ....     .  .. .     .. .   ................             .  . .    .          .   ...    .................     ...       ...  . .      ....   . ......     . .....      .  ..   .       .....        ...................   ..       . . ...  ....  . ..   ..........   .  ... . .. ........   . ............... ...   .  ...           .           ......   .  .... ..  .  . . ....................     .  . ..  ...  ..    ......    ....     ....  ..  ...       ........  .  . ....   . ........ .   .     ........ .    .   ........  .  ............................................................................................................. .    .   .   .    . ......     .....  . .. ..  . .    .   ...... .  .  .   ....    .    .   ...........  ....  . . .   .. ..       ........    .     .  .      ............   .. .  . .   .. ....................  . .    . .  . ............ . ..  . .... ..  ........   .     ............ .. .   . . . ..  ...............  .  ...   ..  . . . ..    .  ................ ...        ..   ..    .  ..........    ........................................................................................................................................  . ...  .........  .  ..  .......... .       .......  .. ..  . ..  .   .   .............    . . . .     ..   .  .      ................    .. . ... .    ...........................   .   ..      .... ...   .  ..      ..     .    ...  .. . .    ..  ..     .................  .  .  ..  .. . ... . .     ......   .    ............ .     .......   .       .      ..........     ..    .  ...    .........   .           ..  .          .. ......................................................................................  .                  .        .    
lowQualScore                  :          7     555 55   0  0 55 22    7   0   0      888888888888   88  8 4    000        111111111111        6  66  22222   7777     6  00 5     22 3   1111111111111111             5  8 5    3          6   222    66666666666666666     555       333  6 3      7777   3 666666     3 33333      2  22   2       77777        3333333333333333333   55       1 2 444  9999  9 66   5555555555   4  444 4 11 11111111   7 555555555555555 999   5  999           6           111111   5  2222 99  5  5 5 55555555555555555555     6  4 55  111  66    555555    7777     7777  77  333       11111111  5  3 3333   7 77777777 7   7     11111111 7    7   33333333  7  3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5    7   3   5    9 111111     88888  7 77 99  7 7    5   888888 7  5  1   7777    7    7   55555555555  3333  7 7 6   77 33       99999999    1     7  7      111111111111   88 0  4 3   66 77777777777777777777  4 4    0 5  7 888888888888 0 22  0 2222 88  22222222   4     999999999999 11 2   2 2 2 88  777777777777777  2  111   11  2 2 2 33    2  3333333333333333 111        11   55    7  8888888888    2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222  7 111  999999999  7  99  7777777777 7       2222222  88 99  9 99  7   4   8888888888888    1 1 1 2     33   1  8      0000000000000000    66 5 555 6    666666666666666666666666666   6   55      3333 000   6  44      99     2    222  55 0 3    00  55     44444444444444444  4  0  99  99 7 777 6 0     000000   3    333333333333 3     0000000   7       3      7777777777     33    3  000    000000000   0           00  0          00 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000  0                  0        0    
consensus                     :      GTCAATCTAG--GC--CAT-TT-T--TT-GGGCCTAA-CCT-CAAACT-AATTTGC----AACAGAAATGATTT---ATTGATTA-TTCAT-T-G--CAAGAAAA-TA--TA-TAC-AAA----CAACA-TA--ATAAAAAT-C-GGC--TGCTG--T--ATCCTCGATGGGAAAATGGGAAATTTTGGGGTTAAATG-ATG--TTTTT--TT----A-AT--A--AAAATC--GCCAAAAA--CTGG-AAATTG----AAG-A------AAAAA-T-----ATAATTTAT--GTANCCTACAATTG--AAAACCAA--T--CTCAAA-T-TTTT-AAA--TTTCAAC-C-T---TT----AA-A-CGAT-TA-A--G--CAT-AAT--A-A--A--------ATC-G---GCTGCT-G----T-A-TCT-CG---ATGGGAAAATGGGAATTTTGGGG--T--AAAA-TG-AT-G--TT-TT-T-T------A-N---T--AT-G-AAAATCGC-C-AAA---AAACTGGA-A----ATTG----AAGAA----AA--AA---TATAATTTA-A----TG-TANCC---TAC-A--N-T---A-AAACCAGTC-CGTC-A-A-TTTT-AAA--------TT-TC---------A----------A----------A-TC-----T------------A--CA-T--ANT-------AAAAA-------TCG----G-CTGC-TGTA--TCCTCGATGGGAAAATGGGAATTT-TGG-G--TTAAA--TGATGGT--T-TTT-T-TTAA-ATA-AN---A-AA-ATCGCC--A-AAAA-CTGG-AAA----------TTG----AA-G-AAAAA--A--TATAATT----TA--TGTANCCTAC-AA-TGAAAA--CAAGCC----TCAT-ATTT-TTAAA--TT--T----C-------A--NTC-T-TTAA-A-TG-A--AAACA--A--T-A--AT-A----A--AA--------ATC-GGCTG--C--T-GTA--T--C-TCG-A-T-GGGAAAATGGGAATTTTTNGGG-TT---AAA--TG-A-T-G--TTTT-TT-----AATNC-A----A---AAATCGCC-AAAAAACTGG-AA-ATT----G-AAGAAA-------AAATATA-AATT---TAGTT---GTAACCTTACAAT-----A----A---CA----AGC---C----TCA-----TAT---TT-TT-AA-A---T-T----C----A--CC-----T---T------AA-A-C-GATNA-AC--CAT-AA-TAA--------AAA-TCGGCTG--C-T-GTA--T--CT-C--GA-TGGGAAA--AT-GGG--A--TTTT-G-G-G-TTAAA--TGA-TGTTTTTTT---T--AA---T-TN-AAAA--TCG--CC-AAAA-CT----G--GAA-A---TTG-GA---AGAAAAA--ATATAA---TT--CATG-TANCCTACAATTGAAAACCAGTCC-TC--A-ATTTTTA-AA--TTTCA---A----CCTTT----AA-AT-GA--TC--A-A-T-TAATGTTTT-TAA-CCAG-CAGA----ATTT-CGTTTCCTGGGC-G---TAATTTTTGGG-GGGGGG---TC-TT--TTTTT--TAATAAAAGTTGTT-------G-AAANCCTAAGAAAAAGGCTCCACGATCTTTNNAATACNGTACATCTAAGANCNCCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAA
Reference ( gi|1 )            :      GTCA-TCTAG--GC--CAT-TT-T--TT-GGGCCTAA-CCT-CAAACTTAATTTGCC--AAACGAAAATTATTT---ATTGATTA-T-CAT-T-G--CAAGAAAA-TA--TA-TAC-AAA----CAACA-TA--ATAAAAA--C-GGC--GCCTG--T--ATTATCGATGGGAAAATGGGAAATTTTGGGGTTAAATG-ATG--GTTTT--T-----A-AT--A--AAAAT---GCCAAAAA--CTGGGAAATTG----AAG-A------AAAAA-T-----ATAATTCAT--GTACCCTACAATTG--AAAACCAA--T-GTTCAAA-T-GTTC-AAA--TTTCAAC-C-T---TT----AA-A-CGAT-TA-A--G--CAT-AA---A-A--A--------ATC-GA--GGT-CT-G----T-A-TCT-CG---ATGGGAAAATGTGAATTTTGGGG--T--AAAA-TG-AC-G--TT-TT-T-T------A-T---T--AC-G-AAAATCGC-C-AAA---AAATTGGAGA----ATTG----AAGAA----AA--AA---TATAATTTA-A----TG-TAACA---TAC-A--T-T---A-AAACCAGTC-CATC-A-A-TTTT-AAA--------TT-TC---------A----------A----------A-TC-----T------------A--CA-T--ATT-------AAAAT-------TCG----AACTCT-TGTT--TCCTTGGTGGGGAAAAGGGGATTT-TCT-G--TTAAA--TGGTGGT--TGTTT-T-TTAA-ATA-AT---A-AA-ATCGCC--A-AAAA-CTGG-AAA----------CTG----AA-G-AGAAA--A--TATAATT----TG--TGTAACCTAC-AA-TGAAAA--CAAGCCA---TCAT-ATTT-TTAAA--TG--T----C-------A--TTC-T-TTAA-A-TG-A--AGACA--A--T-A--AT-A----A--AA--------ATC-GGCTG--A--T-TCA--T--C-TCG-A-T-GAAAAGAAGGGAATTTTTTTGG-TT---AAA--TG-A-T-G--TTTT-TT-----AATTC-A----A---AAATCGCC-AAAAAACTGG-AAGATT----A-AAGATA-------AATTATA-AATT---TGGTT---GTAACCTTACAAT-----A-T-TA---CA----AGC---C----TCA-----TAT---TT-TTGAA-A---T-T----C----A--CC-----T---T------AA-A-T-GATAA-AC--CAT-AA-TAA--------ATA-TCGGCTG--A-T-TTA--T--CT-C--GA-TGGAAAA--A--GGG--A--TTTT-G-G-G-TTAAA--TGA-TGTTTTTTT---T--AA---T-TC-AAAA--TCG--GC-AAAA-CA----A--GGA-A---TTG-GG---AGAGAAA--ATATAA---AT--CATG-TATTCTACAATTGAAAACCAGTCC-TC--A-ATTTTTC-AA--TTTCA---A----TATTC----AA-AT-GA--TC--A-A-T-TAATGTTTT-TAA-CCAG-CAGA----ATTTTCGTTTCCTGG---G---TAAATTTTGGG-GGGGGG---TCTTTGCTTTTT--TAATAAAAAGTGTT-------G-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTA----T-TACA------ATCCCCCCCACAT--ATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAAA
gi|6                          :      GTCAATCTAG---C--CAT-TT-T--TT-GGGCCTAA-CCT-CAAACT-AATT-GC----AACAGAAATGATTT---ATTGATTA-TTCAT---G--CAAGAAAA-TA--TA-TAC-AAA----CAGCA-TA--ATAAAAAT-C-GGC--TGCGG--T--ATC-TCGATGGGAAAATGGGAA-TTTTAGGGTTAAATG-ATG--TTTTT--TTTA--A-AT--ATGAAAATA--GCCAAAAG--CTGG-AAATTG----AAG-A------AAAAA-T-----ATAATTAAT--GTACCCAACAAT-G--AAAACCAA--T-GTC--AA-T-TTTC-AAA--TTTCAAC-C-T---TT----AA-A-CGAT-T--G--G--CATAAA---A-A--A--------ATC-G---GCTGCT-G----T-A-TCT-CG---ATGGGAAAATGGAAATATTGGGA--T--AAAA-TG-ACGG--TT-TT-T-TAA----A-A---T--AC-A-AAAATCGC-C--CA---AAATTGGA-A----ATT
gi|5                          :    taGTCAATCTAG--GC--CAT-TT-TGTTT-GGTCCTAA-CCT-CAAACT-AATT-GC----AACAGAAATGATTT---ATTGATTA-TTCAT-TAG--CAAGAAAA-TA--TA-TAC-AAA----CAGCA-TA--ATAAAAATCC-GGC--TGCGG--T--ATC-TCGATGGGAAA-TGGGAA-TTTTAGGGTTAAATGTATG--TTTTT--TTA---A-AT--ATGAAAATA--GCCAAAG---CTGG-AAATTG----AAG-A------AAAAA-T-----ATAATTAAT--GTACCCAACAA-TGACAAAACCAA--T-GTC--AA-T-TTTC-AAATTTTTCAAC-C-T---TT----AA-ACCGAT-TG-T--G--CATAAA---A-A--A--------ATC-G---GCT-GT-G----T-A-TCT-CGA--ATGGGAAAATGGAAATATTGGGA--T--AAAATTG-AC-G--GT-TT-T-TAA----A-A---T--ACAA-AAAATCGC-C-GCA---AAATTGGGAA----ATTGT---AATAA----AAAGAA---TATAATTT--A----TG-TAACC---TAC-A--A-TGA-A-AAGGCAGTCTCA---A-A-TTTT-AAA--------TT-TC---------A----------A----------C-TT-----T------------A--
gi|3                          :    taGTAA-TCTGGTAGC--CAT-TT-T--TTTGGGCTTAA-CTT-CAAACTTA--TTG----GAACAAAAATGATTT---ATTGATTT-C-TAA-T-G--CAAGAAAA-TA--TA-TAT-AAA----CAACA-TA--AAAGAAAT-C-AACTGGC--G--T--A-TGTTGATGGGAAAATAGG-AATTTT-GGGTTAAATG-ATGTTTTTTT--T-----A-AT--A--TAAATATCGGCATATA--CT-GGAATTTC----AAG-A------AAAAC-T-----ATAATTCAA--GTACCCTACAATGA--AAAAC--A--T-TCTCAAATT-GT---AAA--TTTCAAC-T-T---TTTTAAAA-A-CAAT-T--A--G--CAT-AA---AGA--A--------ATC-GG--CTC-CT-G----T-A-TAT-CG---ATGGGAAAATTGGAATTTTTGGG--T--AAAA-TC-AT-G---T-TT-T-T------A-A---T--AT-G-AAAATTGC-C--CA---AAATT-GAAA----ATTG----AAG-A----AA--AA---TATTATTT--A----TG-TATCC---TAC-AG-T-G---A-AAACCAGTC---TC-A-ACTTTT-AAATATCAGCCTT-TT---------A----------ATG--------A-TC-----A------------A--CA-T--ATT-------AAAAA-------TCG-----GCTGT-TGTT--TCC--------GAA--------TG-TTT-GGATTAAA--TGGTTGT--TTTTT-T-TTCA-A
gi|11                         :      GTCAATCTAG---C--CAT-TT-T--TT-GGGCCTAA-CCT-CAAAGT-AATT-GC----AACAGAAATTATTT---ATTGATTA-TTCAT---G--CAAGAAAA-TA--TA----------------A-TA--A-AAAAT--C-GGC--TGCTG--T--ATC-TCGATGGGAAAATGGGAA-TTTTGGGGTTAAATG-ATG--GTTTT--TTTA--ATAT--A--AAAATC--GCCAAAAA--CTGG-AAATTG----AAG-A------AAAAA-T-----ATAATTCAT--GTACCCg
gi|7                          :    taGTCAATCTAG---C--CAT-AT-T--T---GACATAA-CCT-CAAAACTAATT-GC----AACAGAAATGATTT---ATTGATTA-TTCAT---G--CGAGAAAA-TACATA-TAC-AAA----CAACA-TA--ATAAAAAT-C-GGC---TATG--T--ATC-TCGATGGGAAAATTGG-AATTTTGGGGTT-TATG-ATG--GTTTTG-T-----ATATA-A--AAAAT---GCCCAAAA--CT-GGAAATTGAA--AAA-A------AAAAA-T-----GTAATTTAT--GTATCCTACAA-TG--AAAATCAATCT-GTT-AAA-T--TTT-AAATGTTTCAGT-C-T---TT----AAGA-TGAC-AACA--C--CAT-AA---ATA--A--------A
gi|8                          :    taGTCAATCTAG---C--CAT-AT-T--T----GACAAA-CCT-CAAACACA--TTGC-----ACAGAAATGATTTTATATTGATTA-TTCATGC-GATCGAGAAAACTA--TAATACCAAA----CAACAATATTATAATAAT-C-GGC--TACTG--TTAATTCTCGATGGGAAAATTGGAA-TTTTGGGGTTTA-TG-ATG--GTTTTGTT-----A-ATG-A--AAAATC--GCCAAAAA--CTGG-AAATTGTGAAAAA-A------AAAAA-T-----GTAATTTATCTGTATCCTACAATGA--AAAATCAA--T-CTT-AAA-T-TCTT-AAAT-TTTCAGT-C-T---TT----AA-A-TGAT-CA-AC-T--CAT-AA---A-A--A--------Aaaaaacagtctgctgtat
gi|14                         :      GTCA-CTCAA--GCTACAT-TG-T--TC-GTGCAAAA-CCT-CAAACTTAATGTAACAAAAACGAAA------T---ATTGAATATT-CA--T-A--CAAGACAA-TA--TA-TAG-AAA----GAAaa
gi|17                         : gtcaaGTCAATCTAG---C--CATATTGT--TT-GTGCTTAAACCT-CAA---CAA-TTG----AAACAAAA--TAAAT---ATTGGTTATT-CA--T-G--CA--GAAA-TA--Tagtttgttatatctcaatgggaa
gi|9                          :        aA-TCTAG---C--CAT-AT-T--TT-AGGCAACA-CCT-CAAACT-AATT-GC----AACAGAGATTATTC---A--------------T-G--CAAGAAA--------------------CAGTA-TA--A--AAAT--C-GGC--TGCTG--C--ATC-TCGATGGAAA-----------------TTATAT--ATA-----TA--T-----A-AA--A--TAAATC--GCCCCAAA--CTGAAAAA--A----AAA-ACACCCCAAAAA-CCAGAAATGATTTAT--GTAACCTACAA-TA--AAAACCAG--T--CTCATA-T-TTTT-AAA--TTTTAAC-C-T---TC----AA-----------------CAT-AA---A-A--A--------Attgttatatccaatgta
gi|15                         :      taatcaCTAA--GC--CAT-TT-T--T--GGGCCTCA-CTTTCAAGCT-AATT-GCA--AAA--GAAATTAAT----ATT---TA-T-TAT-T-----------------TA-TAC-AAA----CAACA-TA--AAAAATT--C-GGC--TGCTG--T--ATaaacc
gi|18                         :                                                                                                        caatgAA-T---TA-TGT-AAATGATCAACA-CA--ATAAAAA--C-GGC--TGCTG--T--AATCTCGATGGGAAAGTGGGAA
gi|13                         :                                                                                                      attttaaatttt--TA-AAT-AAT----CAACA-TA--ATAAAAA--CCGGC--TGCTG--T--ATC-TCGATGGAAAAATGG-AAATGTTGGAGTTAAATG-ATG--TTTTT--TTTTA-A-AT--AT-AAAAttg
gi|4                          :                                                                                       gtaacctacaatgaaaaccagtcgcaaattgtaatttcagtcttAACA-CA--ATAAAGA--T---C--GACTGATT--TTTCTCGATGGGAAGAAGGGGA-TTTGGGGGTTAAGTT-ATG--TTTTT--TTC---ATAT--C--AAAATC--GCCAAAAAAACTGG-AGATTG----AAG-A------GAAAA-T-----ATAATTCAT--GTATTCTAC------------CAG--T--CTCATA-T--TTT-AAA--TTTCAACAT-T---TT----AA-ATTGAT-TA-ATTGTTCTT-AA---A---------------C-CA--G----T-A----TAA-TTT-CGTTCCTGGG---ACGTAA---TTGGGG-------GG-GG-GG-G--TTCTT-T-T------ATT---T--AA-T-AAAGT-GT-T---A---GAATTTGAAA----TTTT----AAGAA----AA--AACTCCACGATTT--T----TG-TAATACTGTAC-A--TCT---A-AGACCA
gi|2                          :                                               atcgccaaaaactggaaattgaagagaaaatttaatctgtgtaatctacaataaaaacaagcctcatgttttaaatttcaacctttaaatgataTAAAGAT-C-GGC--TCTTG--T---TTCTTGGTGGGAAAA--GGGAATTTTCTG-TTAAATG-GTG--TTTTT--CTACTCA-AT--A--AAAATC--GCCAAAA---C--GGAAAT-G----AAG-A------AAA----------TAATT-----GTTAACTACAAATG--AAAAC-AA--G-CCTCATA-T--TTT-AAA--TTTCAAC-C-T---TTT---AA-A-TGAA--A-A--A--CAT-AATAAA-A--A--------ATC-GG------CT-GAATTC-A-TCTTCG---ATGGAAAAGAAGGAATTTTTTGG--TT-AAAA-TG-GT-G--TT-TT-C-TTAAAAAA-T---T---C-A-AAAATGGC-C-AAA---AAACTGGAAAG---ATTGA---AAGAG----AA--AA---TATAAGTCACA----TGTTATTA---TAC-A--A-T---A-AAA-TAGTCTCAT--A-A-TT--------------TT-TC---------A----------A----------T-TC-----T------------AATTA-T--ATT-------cccccacccccaacaacaaaaataaatcgaggttatgatataagtaccgcgtacgtgtgtttgtgtgtgtgtgtgtgaaaataacatctgaggtcgaaaaa
gi|10                         :                                                                                         tcgctcaaagagaaattagagacacgataagaagcagaaaactataactatgtaacatacaaatgaaaccagtctcaaattttaatttcaatctacaatATTT--GGGTTAAATG-TTG--GTTTT--T-----T-ATTTG--AAAATA--GCTAAATA--CTTT-AAATTG----AAG-A------AAAAA-T-----GTATTTTAT--ATAATATACAA-TG--TAAACCAG--C--CTCATA-T-G-TC-AAA--TTTCAAC-CATTAATT----AA-A-TGATGTC-A--G--AAT-TA---A-A--ACTTTTCACACCAGAT-GGT-AT-T----T---TTT-CC---TTG----ACTGT-AATTTTTGGG--TAAAAAA-TT-AT-T--TT-TT-T-T------A--------AT-G--AAATTGT-T-AAA---ctattatataatcacacttaatgttttaaaaccagacagaatttcgttcctgggtgtaatttttttgggggggtcttgctttttaaaaataaaagttgttgaaaaacctaagaaaaaggctccacaatcttttaaatacatctaaccccccca
gi|4                          :                                                                                                                                                                                                                                          act---GCCAAAAA--CTGG-AAATTG----AAG-A------GAAAA-T-----TTAATCTGT--GTAATCTACAAT----AAAAACAA--G-CCTCA---T-GTTTTAAA--TTTCAAC-C-T---TT----AA-A-TGAT--A-A--A--CAC-AATA-A-A--G--------ATC-GA------CT-GATT-T-T-TCT-CG---ATGGGAAGAAGGGGATTTGGGGG--T--TAAG-TT-AT-G--TT-TT-T-T--------TCA-T--AT-C-AAAATCGC-CAAAA---AAACTGGAG-----ATTG----AAGAG----AA--AA---TATAATT--------------CA---TGT-A--T-T-----CTACCAGTCTCAT----A-TTTT-AAA--------TT-TC---------A-------------------------------------------A--CA-T--TTT-------AAA
gi|2                          :                                                                                                                                                                                                                                                                 atcG----AAGCA------GAAAACT-----ATAACT-AT--GTAACATACAAATG--AAA-CCAG--T--CTCAAA-T-TTT---AA--TTTCAAT-C-T------------A-CAAT-TA-A----------------A--G--------ATC-G---GCT-CTTG----T-T-TCT-TG---GTGGGAAAAGG-GAATTTTCTGT--T--AAA--TG-GT-G--TT-TT-TCT------A-C---TCAAT-A-AAAATCGC-C-AAA---A---CGGAAA------TG----AAGAA----AA---------TAATT---G----T--TAAC----TAC-AAAT-G---A-AAACAAGCC---TC-ATA-TTTT-AAA--------TT-TC---------A----------A------------CC-----TTTTAAATGAAAAA--CA-T--AAT-------AAAAAA------TCGGCTGAATTCA-T------CTTCGATGGAAAAGAAGGAATTT-TTT-GG-TTAAA----ATGGT---GTTT-TCTTAA-AAA-ATTCAA-AA-ATGGCC--A-AAAAACTGG-AAAGA--------TTG----AAAG-AGAAA--A--TATAAGTCACATG--T-TATTATAC-AA-T-AAAA--T-AGTC----TCATAATTT-TTCAA--T---T----CTAATTATA--TTC-TATTAT-A-TA-A--TCACA--CT-T-A--AT-GTTTTA--AA--------ACCAGACAG--AATT-TCG--TTCC-TGG-G-T----------GTAATTTTTTTGG-GG---GGG--TC-T-T-G--CTTT-TTAAA--AAT---A----A---AAGTTGTT-GAAAAACttgattaattgttcttaaaccagtataatttcgttcctgggacgtaattgggggggggggttcttttatttaataaagtgttagaatttgaaattttaagaaaaaactccacgatttttgtaatactgtacatctaagaccacccccacccccaacaacaaaaataaatcgaggttatgatataagtaccgcgtacgtgtgtttgtgtgtgtgtgtgtgaaaataacatctgaggtcgaaaaa
gi|13                         :                                                                                                                                                                                                                                                                           tcgctcaaagagaaattagagacacgataa--GTAACCTACAAT-G--AAAACCAG--TCG--CAAA-TTGT----AA--TTTCAGT-C-T---TT----AA-A-TAAT-CA-A-----CAT-AATA-A-A--A--------ACC-G---GCTGCT-G----T-A-TCT-CG---ATGGAAAAATGGAAATGTTGGAG--T--TAAA-TG-AT-G--TT-TT-T-T------T-T---T--Actaagaaaaaggctccacaatcttttaaatacatctaaccccccca
gi|18                         :                                                                                                                                                                                                                                                                                                                                                  TTT-AAA--TTTTAAT-TAT---GT----AA-A-TGAT-CA-A-----CAC-AAT--A-A--A--------AAC-G---GCTGCT-G----T-AATCT-CG---ATGGGAAAGTGGGAATTaatataaaa
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                        atT----AA-A-CAA-----------CAT-AA---A-AGAA--------ATC-AACTGGC----G----T-A-TGT-TG---ATGGGAAAATAGGAATTTTGGGT--T--AAA--TG-AT-G--TT-TT-T-T------T-TAA-T--AT-A-AATATCGG-C-ATA---TA-CTGGA-A----TTTC----AAGAA----AA--AC---TATAATTCA-A-----G-TACCC---TAC-AA-T-G---A-AAAACATTC---TC-A-AATTGT-AAA--------TT-TC---------A----------A----------C-TT-----TTTTAAAA-----A--CA----ATT-------AGCATAAAGAAATCG----G-CTCC-TGTA--TA-TCGATGGGAAAATTGGAATTT-TTG-G--GTAAA-------ATCATGTTT-T-T--A-ATA-TG---A-AA-ATTGCC--C-AAAA-TTGA-AAA----------TTG----AA-G-A-AAA--A--TATTATT----TA--TGTATCCTAC-AG-TGAAAA--CCAGTC----TCA--ACTT-TTAAA--TA--T----C-------A--GCC-T-TTTA-A-TG-AT-CAAC---A--T-A--TT-A----A--AA--------ATC-GGCTG-------TTG--T--T-TC----C-GAA------------TGTTTGGATT---AAA--TG-GTT-G--TTTT-TT------TTTC-A----A---g
gi|6                          :                                                                                                                                                                                                                                                                                                    gtaatctggtagccatttttttgggcttaacttcaaacttattggaacaaaaatgatttattgatttctaatgcaagaaaatatata-A--G--CAT-AATA-A-A--A--------ATC-G---GCTGCG-G----T-A-TCT-CG---ATGGGAAAATGGGAATTTTAGGG--T--TAAA-TG-AT-G--TT-TT-T-T------T-TAAAT--AT-G-AAAATAGC-C-AAA---AG-CTGGA-A----ATTG----AAGAA----AA--AA---TATAATT-A-A----TG-TACCC---AAC-AA-T-G---A-AAACCAAT---GTC-A-A-TTTTCAAA--------TT-TC---------A----------A----------CCTT-----T------------A--AA-CG-ATTGGCATAAAAAAA-------TCG----G-CTGC-TGTA--TC-TCGATGGGAAAATGGAAATAT-TGG-G--ATAAAA-TGACGGT--T--TT-T-TAAA-ATA-CA---A-AA-ATCGCC--C-AAAA-TTGG-AAA----------TTg
gi|5                          :                                                                                                                                                                                                                                                                                                tagtcaatctagccattttttgggcctaacctcaaactaattgcaacagaaatgatttattgattattcatgcaagaaaatatatacaaac-A--G--CAT-AATA-A-A--A--------ATC-CG--GCTGCG-G----T-A-TCT-CG---ATGGGAAA-TGGGAATTTTAGGG--T--TAAA-TGTAT-G--TT-TT-T-TTA----A-A---T--AT-G-AAAATAGC-C-AAA---G--CTGGA-A----ATTG----AAGAA----AA--AA---TATAATT-A-A----TG-TACCC---AAC-A--A-TGACA-AAACCAAT---GTC-A-A-TTTTCAAA--------TT-TTTCAACCTTTA----------A----------A-CCGATTGT------------G--CA-T--AAA-------AAAAT--------CG----G---CTGTGTA--TCTCGAATGGGAAAATGGAAATAT-TGG-G--ATAAAATTGACGGT--T---T-T-TAAA-ATACAA---A-AA-ATCGCC--GCAAAA-TTGGGAAA----------TTGT---AA-T-AAAAAGAA--TATAATT----TA--TGTAACCTAC-AA-TGAAAAGGC-AGTC----TCA--AATT-TTAAA--TT--T----C-------A---AC-T-TTA
gi|7                          :                                                                                                                                                                                                                                                                                           tagtcaatctaggccattttgtttggtcctaacctcaaactaattgcaacagaaatgatttattgattattcattagcaagaaaatatatacaaac-A--A--CAT-AATA-A-A--A--------ATC-G---GCT-AT-G----T-A-TCT-CG---ATGGGAAAATTGGAATTTTGGGGTTT--ATGA-TG----G--TT-TT-G-T------A-----T--AT-A-AAAAATGC-C--CA---AAACTGGA-A----ATTGAA--AAAAA----AA--AA---TGTAATTT--A----TG-TATCC---TACAA--T-G---A-AAATCAATC-TGTTAA-A-TTTT-AAATG------TT-TC---------A----------
gi|11                         :                                                                                                                                                                                                                                                                                                       tagtcaatctagccatatttgacataacctcaaaactaattgcaacagaaatgatttattgattattcatgcgagaaaatacatatacaaacAT-AA---A-A--A--------ATC-G---GCTGCT-G----T-A-TCT-CG---ATGGGAAAATGGGAATTTTGGGG--T--TAAA-TG-AT-GGTTT-TT-T-T------A-A---T--AT-A-AAAATCGC-C--AA---AAACTGGA-A----ATTG----AAGAA----AA--AA---TATAATTC--A----TG-TAgtctttaagatgacaacaccataaataaaaaaaacagtctgctgtat
gi|8                          :                                                                                                                                                                                                                                                                                                                                                            tagtcaatctagccattttttgggcctaacctcaaagtaattgcaacagaaattatttattgattattcatgcaagaaaatata-TCT-CG---ATGGGAAAATTGGAATTTTGGGGTTT--ATGA-TG----G--TT-TTGT-T------A--------AT-GAAAAATCGC-C--AA---AAACTGGA-A----ATTGTGAAAAAAA----AA--AA---TGTAATTTATC----TG-TATCC---TAC-A--A-T---G-AAA--A-----ATC-A-A-TCTT-AAA--------TTCTT---------A----------A----------A-TT-----T------------T--CAGT--CTT-------TAAATGA-----TC-----AACTCccc
gi|10                         :                                                                                                                                                                                                                                                                                                                                          gtcaatctagccatatttgacaaacctcaaacacattgcacagaaatgattttatattgattattcatgcgatcgagaaaactataataccaaacaacaatattataataatcggctactgttaatATTT--GGG--T--TAAA-TG-TT-GG-TT-TT-T-T------A-T---T---T-G-AAAATAGC-T-AAA---TACTTTAA------ATTG----AAGAA----AA--AA---TGT-ATTTT-A----TA-TAATA---TAC-A--A-T---GTAAACCAGCCTCAT----A-TGTC-AAA--------TT-TC---------A----------A-------------C---------------------CA-TTAATT-------AAAataaaaaaaa
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 actATCGC-C-AAA---AA-CTGGA-A----ATTG----AAGAG----AA--AA---T-----TTA-ATCTGTG-TAATC---TAC-A--A-T---A-AAAACAAGC-C-TC-ATG-TTTT-AAA--------TT-TC---------A----------ACCTTTAAATGA-TA-----A------------A--CA-C--AAT-------AAAGA-------TCG-----ACTGA-T-TT--TTCTCGATGGGAAGAAGGGGATTTGGGG-G--TTAAG--T--TA----TGTTT-T-TTTC-ATA-TC---A-AA-ATCGCCAAA-AAAA-CTGG-AGA----------TTG----AA-G-AGAAA--A--TATAATT----CA--TGTATTCTAC------------C-AGTC----TCAT-A-TT-TTAAA--TT--T----CA------A--CAT-T-TTAA-A-Ttgatgtcagaattaaaacttttcacaccagatggtattttttccttgactgtaatttttgggtaaaaaattattttttttaatgaaattgttaaa
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCGCTC-AAAGAGAAATTAGAGACACGAT------AAGAAGCAGAA--AAC--TATAACT---A----TG-TAACA---TAC-A--AAT---G-AAACCAGTC---TC-A-A-ATTT-TAA--------TT-TC---------A----------A------------TC-----T------------A--CA----ATT-------AAAGA-------TCG----G-CTCT-TGTT--TC-TTGGTGGG-AAAAGGGAATTT-TCT-G--TTAAA--TGGTGTT--TTTCT-A-CTCA-ATA------A-AA-ATCGCC--A-AAA---CGG-AAA-----------TG----AA-G-AAA--------ATAA-T----TG--T-TAA-CTACAAA-TGAAAA--CAAGCC----TCAT-A-TT-TTAAA--TT--T----C-------A--ACCTT-TTAA-A-TG-A--AAAAC--A--T-A--ATAA----A--AA--------ATC-GGCTGA-A--T-TCA--T--CTTCG-A-TGGAAAAGAAGGAA--TTTTTTGG-TTA--AAA--TG-G-T-G--TTTT-CTTAAAAAATTC-A----A---AAATGGCC-AAAAAACTGGAAAGATTG---A-AAGAGA-------AAATATA-AGTCACAT-GTT---ATTA---TACAAT-----A----A---AAT---AGT---C----TCA-----TAA---TT-TTTCA-A---T-T----C----tgattaattgttcttaaaccagtataatttcgttcctgggacgtaattgggggggggggttcttttatttaataaagtgttagaatttgaaattttaagaaaaaactccacgatttttgtaatactgtacatctaagaccacccccacccccaacaacaaaaataaatcgaggttatgatataagtaccgcgtacgtgtgtttgtgtgtgtgtgtgtgaaaataacatctgaggtcgaaaaa
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          G-TAACC---TAC-AA-T-G---A-AAACCAGTCGCA---A-A-TTGT--AA--------TT-TC---------AGTCTTTAAATA----------A-TC-----A------------A--CA-T--AAT-------AAAAA-------CCG-----GCTGC-TGTA--T-CTCGATGGAAAAATGGAAATGT-TGGAG--TTAAA--TGAT-GT--TTTTT-T-TTAA-AT--AT---A-AA-Ataattatattctattatataatcacacttaatgttttaaaaccagacagaatttcgttcctgggtgtaatttttttgggggggtcttgctttttaaaaataaaagttgttgaaaaacctaagaaaaaggctccacaatcttttaaatacatctaaccccccca
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AA--------TA-CC---------A----------A----------A--C-----A------------A--CAAT--ATT-------ATAATAA-----TCG----G-CTAC-TGTTAATTCTCGATGGGAAAATTGGAATTT-TGG-G--GTTTA--TGATGGT--T--TT-G-TTAA--TG-A----A-AA-ATCGCC--A-AAAA-CTGG-AAA----------TTGTGAAAA-A-AAAAA--A--TGTAATT----TATCTGTATCCTAC-AA-TGAAAAATCAATC-----TTAA-ATTC-TTAAAT-TT--T----C-------A--GTC-T-TTAA-A-TG-A----TCA--AC-T-C--AT-A----A--AA--------A
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gtcaatctagccatatttgacaaacctcaaacacattgcacagaaatgattttatattgattattcatgcgatcgagaaaactatC---------A----------A----------A--C-----A------------A--CA-T--AAT-------AAAAA-------TCG----G---CTATGTA--TC-TCGATGGGAAAATTGGAATTT-TGG-G--GTTTA--TGATGGT--T---T-T-GTAT-ATA-A----A-AA-AT-GCC--C-AAAA-CTGG-AAA----------TTG----AA-A-AAAAA--AAATGTAATT----TA--TGTATCCTAC-AA-TGAAAAT-CAATCTG---TTA--AATT-TTAAA--TGTTT----C-------A--GTC-T-TTAAGA-TG-A--CAACACCA--TAA--AT-A----A--AA--------Aaaa
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tagtcaatctagccatatttgacataacctcaaaactaattgcaacagaaatgatttattgattattcatgcgagaaaatacatata---------A----------A----------A-TA-----T------------A---A-T--A---------AAAAA-------TCG----G-CTGC-TGTA--TC-TCGATGGGAAAATGGGAATTT-TGG-GG-TTAAA--TGATGGT--T--TT-T-TTAATATA-A------AA-ATCGCC--A-AAAA-CTGG-AAA----------TTG----AA-G-AAAAA--A--TATAATT----CA--TGTACCCaaacagtctgctgtat
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tagtcaatctagccattttttgggcctaacctcaaagtaattgcaacagaaattatttattgattattcatgcaaga--CA-T--AAT-------AAAAA-------TCG----G-CTGC-GGTA--TC-TCGATGGGAAAATGGGAATTT-TAG-GG-TTAAA--TGATG-T--T-TTT-T-TTAA-ATA-TG---A-AA-ATAGCC--A-AAAG-CTGG-AAA----------TTG----AA-G-AAAAA--A--TATAATT----AA--TGTACCCAAC-AA-TGAAAAC-CAA--TG---TCA--ATTT-TCAAA--TT--T----C-------A--ACC-T-TTAA-A-CG-AT-TGGC---A--T-A--A--A----A--AA--------ATC-GGCTG--C--T-GTA--T--C-TCG-A-T-GGGAA-AATGGAAATATTGGGA-TA---AAA--TG-A-CGG--TTTT-TTAA---AATAC-A----A---AAATCGCC--CAAAATTGG-AA-ATT----
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tagtcaatctagccattttttgggcctaacctcaaactaattgcaacagaaatgatttattgattattcatgcaagaaaatatatacaaacag--CA-T--AAT-------AAAAA-------TCC----GGCTGC-GGTA--TC-TCGATGGG-AAATGGGAATTT-TAG-GG-TTAAA--TGTATGT--T--TT-T-TTAA-ATA-TG---A-AA-ATAGCC--A-AAG--CTGG-AAA----------TTG----AA-G-AAAAA--A--TATAATT----AA--TGTACCCAAC-AA-TGACA----AAACCAATGTCA--ATTT-TCAAATTTT--T----C-------A--ACC-T-TTAA-ACCG-ATTGTGC---A--T-A--A--A----A--AA--------ATC-GGCTG-----T-GTA--T--C-TCGAA-T-GGGAAAATGGAAA--TATTGGG-AT---AAAATTG-A-C-G--GTTT-TTAA---AATACAA----A---AAATCGCC-GCAAAATTGG-GAAATT----GTAATAAA-------AAGAATATAATT---TA--T---GTAACC-TACAAT-----G----A---AAAGGCAGT---C----TCA-----AAT---TT-T--AA-AT--T-T----C----A--AC-----T---T------
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tagtcaatctaggccattttgtttggtcctaacctcaaactaattgcaacagaaatgatttattgattattcattagcaagaaaatatatacaaacagTTGATGGGAAAATAGGAATTT-TGG-G--TTAAA--TGATG-T--T-TTT-T-TTAA--TA--T---A-AATATCGGC--A-TATA-CTGG-AAT----------TTC----AA-G-AAAAA--C--TATAATT----CA--AGTACCCTAC-AA-TGAAAA--ACATTC----TCA--AATT-GTAAA--TT--T----C-------AACTTT-T-TTA-------A--AAACA--AT-T-AGCAT-A----AAGAA--------ATC-GGCTC--C--T-GTA--T--A-TCG-A-T-GGGAAAATTGGAA-TTTTTGGG-TA---AAA--TC-A-T-G---TTT-TT-----AATAT-G----A---AAATTGCC-CAAAA--TTG-AAAATT----G-AAGA-A-------AAATAT--TATT---TA--T---GTATCC-TACAGTG----A-A-AA---CC----AGT---C----TCA------AC---TT-TT-AA-A---TAT----C----AGCCT-----T---T------TA-A-T-GATCA-A---CAT-AT-TAA--------AAA-TCGGCTG------TTG--T--TT-CCGAA-TG-------------------TTT-G-G-A-TTAAA--TGGTTGTTTTTTT-----------T-TC-AAta
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gtaatctggtagccatttttttgggcttaacttcaaacttattggaacaaaaatgatttattgatttctaatgcaagaaaatatatataaacaacataaaagaaatcaactggcgtatg-G--TTAAA--TGTTGGT--TTTTTAT-TTGA-A-A-AT---A-------GCT--A-AATA-CTTT-AAA----------TTG----AA-G-AAAAA--A--TGTATTT----TA--TATAATATAC-AA-TGTAAA--CCAGCC----TCAT-A-TG-TCAAA--TT--TCAACC-------A--TTA-A-TTAA-A-TG-A--TGTCA--G--A-A--TT-A----A--AACTTTTCACACC-AGATGGTA--T-TTT--TTCC-TTG-ACT-GTAA-----------TTTTTGG-GTAAAAAA--TT-A-T-T--TTTT-TT-----AAT--------G---AAATTGTT-AAAg
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   actatttggTAT-ATA-AA---ATAA-ATCGCC--C-CAAA-CTGA-AAAAAAAAACACCCCA----AA-A-ACCAG--A--AATGATT----TA--TGTAACCTAC-AA-TAAAAA--CCAGTC----TCAT-ATTT-TTAAA--TT--T----T-------A--ACC-T-TCAACA-TA-A--AAAAA--A--
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               taatcaatctagccatattttaggcaacacctcaaactaattgcaacagagattattcatgcaagaaacagtataaaaatcggctgctgcatctcgatggaaattatata-ATCGCC--A-AAAA-CTGG-AAA----------TTG----AA-G-AGAAA--A--TTTAATC----TG--TGTAATCTAC-AA-TAAAAA--CAAGCC----TCAT-GTTT-T-AAA--TT--T----C-------A--ACC-T-TTAA-A-TG-AT-AAACA-----C-A--AT-A----A--AG--------ATC-GACTG--A--T-TTT--T--C-TCG-A-T-GGGAAGAAGGGGATTTGGG-GG-TT---AAG--TT-A-T-G--TTTT-TT--------TC-ATATCA---AAATCGCCAAAAAAACTGG--AGATT----G-AAGAGA-------AAATAT--AATT---CA--T---GTA---TT------------C-TA---CC----AGT---C----TCA-----TAT---TT-T--AA-A---T-TTCAAC----A--TT-----T---T------AA-ATT-GATTA-Aacc
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 G----AA-GCAGAAA--AC-TATAACT-----A--TGTAACATAC-AAATGAAAC--CA-GTC----TCAA-ATTT-T--AA--TT--T----C-------A--ATC-T----------------ACA--A--T-----T-A----A--AG--------ATC-GGCTC--T--T-GTT--T--C-TTG-G-T-GGGAA-AAGGGAATTTTCT--G-TT---AAA--TG-G-T-G--TTTT-TC-----TACTC-A----ATAAAAATCGCC-AAAA---CGG-AAA--T----G-AAGA-A-------AAT-----AATT-----GTT-----AAC--TACAA------A-T-GAAAACA----AGC---C----TCA-----TAT---TT-T--AA-A---T-T----TCA--A--CC-----T---TTT----AA-A-T-GA-AA-AA--CAT-AA-TAA--------AAAATCGGCTG--AAT-TCA--T--CTTC--GA-TGGAAAAGAA--GGA--A--TTTT-TTG-G-TTAAAA-TGG-TGTTTTCTT---A--AAAAAT-TC-AAAA--ATG--GC-CAAA-AA----ACTGGA-AAGATTG-AA---AGAGAAA--ATATAA---GTCACATGTTATTATACAAT--AAAA-TAGT-C-TCATA-ATTTTTC-AA--TTCTAATTA----TATTCTATTAT-AT-AA--TC--ACACT-TAATGTTTTAAAA-CCAGACAGA----A-TTTCG-TTCCTGGGT-G---TAATTTTTTTG-GGGGGG---TC-TTGCTTTTTAAAAATAAAAGTTGTT-------GAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAA----A-TACATCT---AACCCCCCCAttgttcttaaaccagtataatttcgttcctgggacgtaattgggggggggggttcttttatttaataaagtgttagaatttgaaattttaagaaaaaactccacgatttttgtaatactgtacatctaagaccacccccacccccaacaacaaaaataaatcgaggttatgatataagtaccgcgtacgtgtgtttgtgtgtgtgtgtgtgaaaataacatctgaggtcgaaaaa
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tcgctcaaagagaaattagagacacgataaGTAACCTAC-AA-TGAAAA--CCAGTCG----CAA-ATTG-T--AA--TT--T----C-------A--GTC-T-TTAA-A-TA-ATCA-ACA-----T-A--AT-A----A--AA--------ACC-GGCTG--C--T-GTA--T--C-TCG-A-T-GGAAA-AATGGAAATGTTGGAG-TT---AAA--TG-A-T-G--TTTT-TT-------TTT-A----A---ATAT
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       T-ATTTATTGA-------T----T-------A--TTC--------A-TGCA--AGAAA--A--T-ATAAT-A----A--AAA-------ATC-GGCTG--C--T-GTA--T--C-TCG-A-T-GGGAAAATGGGAA-TTTTGGGG-TT---AAA--TG-A-T-GGTTTTT-TT-----AATAT-A----A---AAATCGCC--AAAAACTGG-AA-ATT----G-AAGAAA-------AAATATA-Aaaaa
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tagtcaatctagccattttttgggcctaacctcaaagtaattgcaacagaaatTT-TTAAA--TT--T----T-------AA-TTA-T-GTAA-A-TG-ATCA-ACA-----C-A--AT-A----A--AA--------A-C-GGCTG--C--TGTAA--T--C-TCG-A-T-GGGAAAGTGGGAATTttcatgtaccc
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         a--AAACAGCA--T-A--AT-A----A--AA--------ATC-GGCTG--C--G-GTA--T--C-TCG-A-T-GGGAAAATGGGAA-TTTTAGGG-TT---AAA--TG-A-T-G--TTTT-TTTTA--AATAT-G----A---AAATAGCC--AAAAGCTGG-AA-ATT----G-AAGAAA-------AAATATA-A--T---TAA-T---GT-ACCCAACAAT-----G----A----A----AAC---CAATGTCA------AT---TT-TCAAA-T---T-T----C----AACCT-----T---T------AA-A-C-GATTG-G---CAT-AA--AA--------AAA-TCGGCTG--C-T-GTA--T--CT-C--GA-TGGGAAA--A--TGGAAA--TATT-G-G-GATAAAA--TGA-CGGTTTTTTA--A--AA---T-ACAAAAA--TCGC-CC-AAAA-TT----G--GAA-A---TTg
gi|5                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tagtcaatctagccattttttgggcctaacctcaaactaattgcaacagaaatgatttattgattattcatgcaagaaaatatatac--AAACAGCA--T-A--AT-A----A--AA--------ATCCGGCTG--C--G-GTA--T--C-TCG-A-T-GGGAA-ATGGGAATTTTAG-GG-TT---AAA--TGTA-T-G--TTTT-TTTA---AATAT-G----A---AAATAGCC-AAAG--CTGG-AA-ATT----G-AAGAAA-------AAATATA-A--T---TAAT----GTA-CCCAACAAT-----G----A---CA----AAA---C----CAA-----TGTCAATT-TTCAA-A---T-T----TTTCAA--CC-----T---TT-----AA-A-CCGATTG-TG--CAT-AA-AAA--------A-A-TCGGCTG----T-GTA--T--CT-C--GAATGGGAAA--A--TGG--AAATATT-G-G-G-ATAAAATTGA-CGGTTTTTA---A--AA---T-AC-AAAAAATCGCCGC-AAAA-TT----G--GGA-AA--TTG-TA---ATAAAAAGAATATAA---TT--TATG-TAACCTACAATGAAAAGGCAGT-C-TC--A-AATTTTA-AA--TTTCA---A----
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              tagtcaatctaggccattttgtttggtcctaacctcaaactaattgcaacagaaatgatttattgattattcattagcaagaaaatatatac--AAACA--ACAT-A--AA-A----G--AA--------ATC-AACTG--G--C-GTA--T--G-TTG-A-T-GGGAAAATAGGAATTTTG--GG-TT---AAA--TG-A-T-GTTTTTT-TT-----AATAT-A----A---ATATCGGC--ATATACTGG-AAT-TT----C-AAGAAA-------AACTATA-ATTC---AAGT-------ACCCTACAAT-----G----A---AA----AACATTC----TCA-----AAT---TG-T--AA-AT--T-T----C----A--AC-----T---TTTTTAAAA-A-C-AATTA-G---CAT-AA--AG--------AAA-TCGGCTC--C-T-GTA--T--AT-C--GA-TGGGAAA--ATTGGA--AT-TTTT-G-G-G-TAAAA--TCA-TG---TTTT---T--AA---TATG-AAAA--TTGC-CC-AAAA-TT----G--AAA-A---TT--GA---AGA-AAA--ATATTA---TT--TATG-TATCCTACAG-TGAAAACCAGT-C-TC--A-ACTTTTA-AA--TATCA---G----CCTTT----TA-AT-GA--TC--A-A-cttta
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gtaatctggtagccatttttttgggcttaacttcaaacttattggaacaaaaatgatttattgatttctaatgcaagaaaatatatat--AAACA--ACAT-A--AT-A----A--AA--------ATC-GGCT---A--T-GTA--T--C-TCG-A-T-GGGAAAATTGGAA-TTTTGGGG-TT----TA--TG-A-T-G--GTTT-TG-----TATAT-A----A---AAAATGCC--CAAAACTGG-AA-ATTGA--A-AAAAAA-------AAATGT--AATT---TA--T---GTATCC-TACAATGAAA-A-T------CA----ATC---TG---TTA-----AAT---TT-T--AA-ATGTT-T----C----AGTCT-----T---T------AAGA-T-GACAACAC--CATAAA-TAA--------Acatattaaaaatcggctgttgtttccgaatgtttggattaaatggttgtttttttttcaag
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  tagtcaatctagccatatttgacataacctcaaaactaattgcaacagaaatgatttattgattattcatgcgagaaaatacatatac--AAACA--G--T-A---T-A----A--AA--------ATC-GGCTG--C--T-GCA--T--C-TCG-A-T-GGAAA------------------TT---ATA--T--A-T-A--TAT---------AA----A----AT--AAATCGCC-CCAAA-CTGA-AAAA------A-AAAACACCCCAAAAACCAGA-AAT-----GATTTATGTAACCT-ACAAT-----A-A-AAA--CC----AGT---C----TCA-----TAT---TT-TT-AA-A---T-T----TTA--A--CC-----T---T------CA-A-C--ATAA-Aaaaaacagtctgctgtat
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             taatcaatctagccatattttaggcaacacctcaaactaattgcaacagagattattcatgcaagACA--A--T-ATTAT-A----A--TA--------ATC-GGCTA--C--TGTTAATT--C-TCG-A-T-GGGAAAATTGGAATTTTGG-GG-TT---TA---TG-A-T-GG-TTTTGTT-----AATG--A----A---AAATCGCC--AAAAACTGG-AA-ATTGTGAA-AAAAAA-------AAATGT--AATT---TATCT---GTATCC-TACAATGAAAAA-T------CA----A-T---C----TTA-----AAT---TC-TT-AA-ATT-T-T----C----AGTCT-----T---T------AA-A-T-GATCA-ACT-CAT-AA-AAA--------Aaaaaaacc
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gtcaatctagccatatttgacaaacctcaaacacattgcacagaaatgattttatattgattattcatgcgatcgagaaaactataataccaaacaTTTGGG-TT---AAA--TG-T-T-G--GTTT-TT-----TATTT-G----A---AAATAGCT--AAATACTTT-AA-ATT----G-AAGAAA-------AA--ATG-TATT---TTA-T---ATAATA-TACAAT-----G-TAAA---CC----AGC---C----TCA-----TAT---GT-C--AA-A---T-T----TCA--A--CCATTAAT---T------AA-A-T-GAT---GT--CAG-AATTAAAACTTTTCACA-CCAGATGGTA-T-TTT--TTCCT-T--GACTGTAA------------T--TTTT-G-G-G-TAAAA--AAT-TATTTTTTT---T--AA---T----GAAA--TTG--TT-AAAaa
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      actaATCGCC-AAAAA-CTGG-AA-ATT----G-AAGAGA-------AAATTTA-A-TC---TG--T---GTAATCT-ACAAT-----A-A-AAA--CA----AGC---C----TCA-----TGT---TT-T--AA-A---T-T----TCA--A--CC-----T---TT-----AA-A-T-GATAA-AC---AC-AA-TAA--------AGA-TCGACTG--A-T-TTT--T--CT-C--GA-TGGGAAG--AAGGGG--A--TTTG-G-G-GGTTAAG--TTA-TGTTTTTTT---C--AT---A-TC-AAAA--TCG--CC-AAAA-AA----ACTGGAGA---TTG-A----AGAGAAA--ATATAA---TT--CATG-TATTCTAC----------CAGTC--TC--A-TATTTTA-AA--TTTCA---A----CATTTT---AA-ATTGA--TT--A-A-T-T---GTTCT-TAAACCAG-TATA----ATTT-CGTT-CCTGG---GACGTAA---TTGGG-GGGGGGGGTTCTTT---TATT--TAATAAA--GTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAA
gi|11                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TT---TGGGC---CTAACCTCAAAGT-----AAT-TG---CA----A-----------CAGAAATTAT---TTATTGATTA---T-T----C----A-------------T------GC-A-A-GA-AA-AT---AT-AA-TAA--------AAAATCGGCTG--C-T-GTA--T--CT-C--GA-TGGGAAA--ATGGGA--A--TTTT-G-G-GGTTAAA--TGA-TGGTTTTTT---T--AA---TATA-AAAA--TCG--CC-AAAAACT----G--GAA-A---TTG-A----AGAAAAA--ATATAA---TT--CATG-TA
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tagtcaatctagccattt---GTAACCT-ACAATG----A-A-AA---CC----AGT---C----GCA-----AAT---TG-T--AA-T---T-T----C----AGTCT-----T---T------AA-A-T-AATCA-AC---AT-AA-TAA--------AAA-CCGGCTG--C-T-GTA--T--CT-C--GA-TGGAAAA--A--TGGAAA--TGTT-G-GAG-TTAAA--TGA-TGTTTTTTT---TTAAA---T-AT-AAAA--ccc
gi|18                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ---TT-TTAAA-T---T-T----T----A--AT-----TATGT------AA-A-T-GATCA-AC---AC-AA-TAA--------AAA--CGGCTG--C-T-GTAA-T--CT-C--GA-TGGGAAA--GT-GGG--A--ATT
gi|8                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             a------AA-A-C-AACAATAT--TAT-AA-TAA------------TCGGCTA--C-TGTTAATT--CT-C--GA-TGGGAAA--ATTGGA--A--TTTT-G-G-G-GTTTA--TGA-TGGTTTTGT---T--AA---T-GA-AAAA--TCG--CCAAAAA-CT----G--GAA-A---TTG-TGAAAAAAAAAA--ATGTAATTTAT--C-TG-TATCCTACAATGAAAAATCAATCT-TA--A-ATTCTTA-AAT-TTTCA---G----TCTTT----AA-AT-GA--TC--A-A-C-TCATg
gi|6                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gtcaatctagccatatttgacaaacctcaaacacattgcacagaaatgattttatattgattattcatgcgatcgagaaaactataataccACAA-ACAGCAT-AA-TAA--------AAA-TCGGCTG--C-G-GTA--T--CT-C--GA-TGGGAAA--ATGGGA--A--TTTTAG-G-G-TTAAA--TGA-TGTTTTTTT---TA-AA---TATG-AAAA--TAG--CC-AAAAGCT----G--GAA-A---TT--GA---AGAAAAA--ATATAA---TT--AATG-TACCCAACAA-TGAAAACCAAT-G-TC--A-ATTTTCA-AA--TTTCA---A----CCTTT----AA-AC-GA--Taaaaaaaa
gi|7                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       tagtcaatctagccattttttgggcctaacctcaaactaattgcaacagaaatgatttattgattattcatgcaagaaaatatatACAA-ACAACAT-AA-TAA--------AAA-TCGGCT---A-T-GTA--T--CT-C--GA-TGGGAAA--ATTGGA--A--TTTT-G-G-G-GTTTA--TGA-TGGTTTTGTATAT--AA--------AAAA--TGC--CC-AAAA-CT----G--GAA-A---TTGAAA---AAAAAAA--ATGTAA---TT--TATG-TATCCTACAA-TGAAAATCAATCTGTT--A-AATTTTA-AATGTTTCA---G----TCTTT----AAGAT-GA---C--A-A-tggcataaaaaaatcggctgctgtatctcgatgggaaaatggaaatattgggataaaatgacggttttttaaaatacaaaaatcgcccaaaattggaaatt
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    tagtcaatctagccatatttgacataacctcaaaactaattgcaacagaaatgatttattgattattcatgcgagaaaatacatatA-TAA--------AAA-TCGGCTG--C-T-GCA--T--CT-C--GA-TGGAAAcaccataaataaaaaaaacagtctgctgtat
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      taatcaatctagccatattttaggcaacacctcaaactaattgcaacagagattattcatgcaagaaacagtTTT-G-G-G-TTAAA--TGT-TG-GTTTTT---T--AT---T-TG-AAAA--T-A--GC-TAAA-TACTTTA----A-A---TT--GA---AGAAAAA--ATGTAT---TT--TATA-TAATATACAA-TGTAAACCAG-CC-TC----ATATGTCAAA--TTTCA---ACCATTAATT----AA-AT-GATGTCAGA-A-T-TAAAACTTT-TCA--CAC-CAGATGGTATTT---TTTCCTTGACTG---TAATTTTTGGGTAAAAAA---TTATT--TTTTT--TAAT-GAAATTGTT-------A-AAttatatatatataaaataaatcgccccaaactgaaaaaaaaaacaccccaaaaaccagaaatgatttatgtaacctacaataaaaaccagtctcatatttttaaattttaaccttcaacataaaaaaaaacc
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       actaAGAAA-----TGA---TT--TATG-TAACCTACAAT-AAAAACCAGT-C-TC--ATATTTTTA-AA--TTTTA---A----CCTTC----AA-
gi|13                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   taatcaatctagccatattttaggcaacacctcaaactaattgcaacagagattattcatgcaagaaacagtataaaaatcggctgctgcatctcgatggaaattatatatatataaaataaatcgccccaaactgaaaaaaaaaacaccccaaaaaccG-TAACCTACAAT-GAAAACCAGTCG-CA--A-ATTGT---AA--TTTCA---G----TCTTT----AA-AT-AA--TC--A-A-CATAATcataaaaaaaaacc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): ATCTAGTCAAACCAGCATCAAACGAATTGCATTAGAAATGAATTATTGATTATTCATGCAAGATAACATATTAAAAAATAGGTTGTTATATCTTAATGGAAAGATTTGCAACATGATAATTACCCCAAACTGGAAACTGAAGAA
Unaligned ( gi|16 ): TCTAGTCAAGCCAGCCTTATTGTTCGTACAAAACCTCAAACGGCAACAGTAACGCAATATTGATTATTCATTCAAGATAACATATTCCAAAAAGATG






Alignments
lowQualScore                  :                                       222                                         3                                 2222222                                                        22                                      111            22222222                          1111     1111111     11111                      22222         1111             11                         333333333333     1                                                                   2222     111          22      1   1     1       11          2              33          33  1  1       44444444      11                    2       1   6666666666666666666                   2                                        2      2       1             2        1   2         11           4444444444     11            11                  2          2222                       333            22      1           4444444444444    1   111    555555555555               22       33    11                      1       3333     1         2222    11       1     1            2222222               33333       11   1                  11   11111   222222         1   2222              666666666666      1  11  111111             22   1    222222       1     2222            11          222        111     11   2222      111          22                 33333333333333333        11              1   44444444444444444444    222    4444444444                                  
lowQualScore                  :                                  3    555  44  3  3 44 99    00  3   3    3  6    0  44           2 5555            2222222        4444   44444   333  3  9999       3         55  44             0  7 9    1     888   4  000       66 4 00000000   4  4            4      5555     4444444     22222      3 66    1       22222         0000     3   1   66        4   9999  4 5    111111111111     3    55  5 5  0     5     6                3           8    8 5     8888 1   444          88    6 0   0     3   7   88          3     1      1 11          55  3  3       88888888      88         1     4    0  88   7   8888888888888888888   55        6 2   0            1                     6     0 6    0       5     1 2     0     3  5   0   4     88   3   1   9999999999     88            33 555              8          1111                4  1   555            22      3  7     4  1111111111111    3   333    111111111111               11  8    11    88   6  88   6        4 3       4444     3      0  4444    88       0     0  1         9999999  1     2      22222  0    33   9    2         3   33   00000   444444   22  3 5   1111    3         777777777777      0  33  555555  333        22   0    222222   2   5     6666            33     2    777        777     66   1111      555          77      0      22  44444444444444444 1      77 2  4         5   66666666666666666666    111    0000000000                                  
lowQualScore                  :                                  .    ...  ..  .  . .. ..    ..  .   .    .  .    .  ..           . ....            .......        ....   .....   ...  .  ....       .         ..  ..             .  . .    .     ...   .  ...       .. . ........   .  .            .      ....     .......     .....      . ..    .       .....         ....     .   .   ..        .   ....  . .    ............     .    ..  . .  .     .     .                .           .    . .     .... .   ...          ..    . .   .     .   .   ..          .     .      . ..          ..  .  .       ........      ..         .     .    .  ..   .   ...................   ..        . .   .            .                     .     . .    .       .     . .     .     .  .   .   .     ..   .   .   ..........     ..            .. ...              .          ....                .  .   ...            ..      .  .     .  .............    .   ...    ............               ..  .    ..    ..   .  ..   .        . .       ....     .      .  ....    ..       .     .  .         .......  .     .      .....  .    ..   .    .         .   ..   .....   ......   ..  . .   ....    .         ............      .  ..  ......  ...        ..   .    ......   .   .     ....            ..     .    ...        ...     ..   ....      ...          ..      .      ..  ................. .      .. .  .         .   ....................    ...    ..........                                  
lowQualScore                  :                                  3    888  66  3  3 66 11    33  1   1    1  2    5  22           8 8888            6666666        3333   77777   000  3  3333       6         00  88             1  3 0    9     444   4  777       11 4 88888888   4  7            4      6666     4444444     55555      1 99    0       66666         1111     2   4   77        4   4444  4 0    000000000000     4    66  7 7  7     7     7                7           0    0 6     0000 0   000          22    0 0   0     3   3   33          7     0      0 77          33  3  3       33333333      33         0     0    0  55   0   5555555555555555555   00        0 5   0            0                     0     0 0    0       5     0 5     0     0  5   0   0     55   0   0   5555555555     55            00 000              5          0000                0  0   000            77      3  3     7  0000000000000    3   000    333333333333               77  3    77    33   0  33   7        7 3       3333     3      7  3333    33       0     0  2         8888888  0     5      22222  2    88   0    2         5   88   55555   888888   88  2 0   8888    0         555555555555      0  88  888888  888        55   0    222222   5   5     8888            88     5    555        555     55   2222      000          00      7      00  77777777777777777 0      55 5  0         5   00000000000000000000    000    5555555555                                  
consensus                     :                            GTCAAT-CTAG---CC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAATC-GGCTGCTGT--ATC-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-TTTTTTT--A-A---T-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTTAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAAAAAAA-TCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-GTTTTTT----AATAC---GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTT-ATGTAACCTACANTG-AAAACCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTNGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCCAAAAA-CCGGAA-ATTGAAGANAAA-T-TAA-TCTGGTTGT-AACCTTACAA-T---A--A---CAAGCCTCATATTTTA-AATTTCAA-CCTT--AAATGATAAACCATAATAAANA-TCGGCTGA-TTTATCT-CGATGGAAA-AAGGGGA--TTTTGGG-TTAAA-TGATGTTTTTTTNAN----TTNAAAATNGCCAAA-AAA-CTGGAAA--TTGGAAGAGAAAATATAANTCA--TGT-ATTNTACAATTGAAAACCAGTCCTCA--NNTTTTNAATTTCAAC------C-T---TTAAAT-GA--TC--A-A-TTAATGTTTTTAAACCAG-CAGA----A-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTTAA---TAAAA-GTTG----TTGAAAT-TCTAAGAAAAAG-CTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 )     :                            GTCAAT-CTAG--GCC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATTTGC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAATC-GGCTGCTGT--ATCCTCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-TTTTTTT--A-A---T-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTTA--TGTANCCTACAATTG--AAAACCAAT-C--TCAAATTTTTAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAATAAAA-TCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATTTTGGGGTAAAA-TGAT-GTTTTTT----ANTAT---GAAAATCGCCAAAAAACT-GGA-AATTG-AAGAAAA--AATATAATTTAATGTANCCTACANT--AAAACCAGTCCGTC-AA-TTTTAAA--------TTTCAA--ATCTACATANTAAAAATCGG-CTGCTGTATCCTCGATGGGAAAATGGGAATTTTGGGTTAAATGATGGTT-TTTTTTAAATAANAAAATCGCCAAAAACTGGAAATTGAAG-AAAAAA-TATAATTTATGTANCCTACAA-TGAAAACAAGCC-TCATATTTTTAAATTTCANTCTTTAAATGAAAACAATAATAAAAATCGGCTGCTGTATCTCGATGGGAAAATGGGAATTTTTNGGGTTAAATGATGTTTTTTAATNCAA---AAATCGCCAAAAAACTGGAA-ATTGAAGAAAAAATATAAATTTAGTTGT-AACCTTACAA-T---A--A---CAAGCCTCATATTTTT-AAATTCA--CCTT--AAACGATNAACCATAATAAAAA-TCGGCTGC-TGTATCT-CGATGGGAA-AATGGGA--TTTTGGG-TTAAA-TGATGTTTTTTTTAA----TTNAAAATCGCCAAA-A---CTGGAAA--TTGGAAGAAAAAATATAATTCA--TGT-ANCCTACAATTGAAAACCAGTCCTCA--ATTTTTAAATTTCAAC------C-T---TTAAAT-GA--TC--A-A-TTAATGTTTTTAA-CCAG-CAGA----A-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGGTCTT---TTTTTTAA---TAAAA-GTTG----TTGAAAN-CCTAAGAAAAAGGCTCCACGATCTTTNNAATACNGTACATCTAAGANCNCCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAA
gi|1                          :                            GTCA-T-CTAG--GCC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA-C-GGCGCCTGT--ATTATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-GTTTTT---A-A---T-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-GTTTTTT----ATTAC---GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT--AAAACCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTACAA-TGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTCAA---AAATCGCCAAAAAACTGGAAGATTAAAGATAAATTATAAATTTGGTTGT-AACCTTACAA-T---ATTA---CAAGCCTCATATTTTTGAAATTCA--CCTT--AAATGATAAACCATAATAAATA-TCGGCTGA-TTTATCT-CGATGGAAA-AA-GGGA--TTTTGGG-TTAAA-TGATGTTTTTTTTAA----TTCAAAATCGGCAAA-A---CAAGGAA--TTGGGAGAGAAAATATAAATCA--TGT-ATTCTACAATTGAAAACCAGTCCTCA--ATTTTTCAATTTCAAT------A-T---TCAAAT-GA--TC--A-A-TTAATGTTTTTAA-CCAG-CAGA----ATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTTAA---TAAAA-AGTG----TTGAAAT-TCTAAGAAAAA-CCTTCACAATCTTTTTATTACA-----------ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGTG----------TATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTTGGG-TTAAA-TGTTGGTTTTTT-AT----TTGAAAATAGCTAAATA---CTTTAAA--TTG-AAGAAAAAATGTATTTTA--TAT-AATATACAA-TGTAAACCAG-CCTCA--TATGTCAAATTTCAAC------CATTAATTAAAT-GATGTCAGA-A-TTAAAACTTTTCA--CAC-CAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTTAA---TGAAA--TTG----TTAAAa
gi|11                         :                        actaGTCAAT-CTAG---CC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCAT---G--CAAGAAAA-T--ATA------------A-TA--A--AAAATC-GGCTGCTGT--ATC-TCGATGGGAAAATGGGAA-TTTTGGGGTTAA-ATG-AT-GGTTTTTTT--A-A---T-ATAAAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12                         :                                                            taCCAG-CAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAATA-GGTTGTTAT--ATCTT---------AATGGAAAGATTTG----CAACATG-AT-------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13                         :                                                                                                                                                                                                                                                                                                       atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--AA--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT---AAAA
gi|14                         :                             TCAAG-CTA-----C--AT-TG-T--TC-GTGCAAAA-CCT-CAAA-CTTAAT--GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-CTCAATGGGAA
gi|15                         :                    gtcaagtcacCAATGCTAA--GCC--AT-TT-T--T--GGGCCTCA-CTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATTC-GGCTGCTGT--AT
gi|16                         :                            GTCAAG-CCAG---CCTTAT-TG-T--TC-GTACAAAA-CCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17                         :                        tctaGTCAAT-CTAG---CC--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAAAT----ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18                         :                                                                                                                                                                                                                                                                                                                                                    aTTTTAAA--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAATAAAA-ACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATTttgttatatccaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAAAA-GGGAATTTTCTG--TTAAATGGTGTTTTTCTACTCAATAAAAATCGCCAAAA---CGGAA-AT-GAAGAAAA----------TAATTGTTAAC--TACAAATGAAA--A---CAAGCCTCATATTTTA-AATTTCAA-CCTTTTAAATGA-AAAACATAATAAAAAATCGGCTGAATTCATCTTCGATGGAAA-AGAAGGAATTTTTTGG-TTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCCAAA-AAA-CTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAAT--AAAAT-AGTC-TCATAATTTTTCAATTCTAATTATATTC-TA--TTATAT-AA--TC--ACACTTAATGTTTTAAAACCAGACAGA----A-TTTCGTT-CCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA-----TACATCTAA---CCCCCCCAg
gi|3                          : tcgctcaaagagaaattagagacacgataaAAT-CTGGTAGCC--AT-TT-T--TTTGGGCTTAA-CTT-CAAA-CT-TATTGG---AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAATC-AACTGGCGT--AT-GTTGATGGGAAAATAGG-AATTTT-GGGTTAA-ATG-AT-GTTTTTTTT--A-A---T-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAA-TG--AAAAACATT-C--TCAAA-TTGTAAA--TTTCAACT-TTTTTAAAA-A-CAAT-------T-A-GCATAAAGAAA-TCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G-TTTTT----AATAT---GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTT-ATGTATCCTACAGTG-AAAACCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTT-TTTTTT
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            gtATCGCCAAAAA-CTGGAA-ATTGAAGAGAAAATTTAA-TCTG--TGT-AATCT-ACAA-T---A--AAAACAAGCCTCATGTTTTA-AATTTCAACCTTT--AAATGATAAAC-ACAATAAAGA-TCGACTGA-TTTTTCT-CGATGGGAAGAAGGGGA--TTTGGGGGTTAAG-TTATGTTTTTTTCAT----ATCAAAATCGCCAAA-AAAACTGGAGA--TTG-AAGAGAAAATATAATTCA--TGT-ATTCTAC----------CAGTC-TCA--TATTTTAAATTTCAACA-----T-T---TTAAATTGA--TT--A-A-TT---GTTCTTAAACCAG-TATA----A-TTTCGTT-CCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTTAA---TAAAGTGTTAGAATTTGAAAT-TTTAAGAAAAAA-CTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAtcaag
gi|5                          :                            GTCAAT-CTAG--GCC--AT-TT-TGTTT-GGTCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--ATC-TCGATGGGAAA-TGGGAA-TTTTAGGGTTAA-ATGTAT-G-TTTTTTT--A-AATAT-G--AAA-ATAGCCAAAG-CTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAAATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAAAAAAA-TCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-GGTTTTT----AAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTT-ATGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6                          :                          taGTCAAT-CTAG---CC--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT---G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATC-GGCTGCGGT--ATC-TCGATGGGAAAATGGGAA-TTTTAGGGTTAA-ATG-AT-G-TTTTTTTTAA-A---T-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAAT-G--AAAACCAAT-G--TCAA-TTTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------TG--GCATAAAAAAA-TCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGGTTTTTTAA--AATAC---AAAAATCGCC-CAAAATT-GGA-AATT
gi|7                          :                          taGTCAAT-CTAG---CC--AT-AT-T--T---GACATAA-CCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAATC-GGCTA-TGT--AT-CTCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-G-GTTTTGT--ATA---T-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAA-TTTTAAATGTTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAAAAAAA-ACA-GTCTGCTGTA-T
gi|8                          :                          taGTCAAT-CTAG---CC--AT-AT-T--T----GACAAA-CCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAATC-GGCTACTGTTAATTCTCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-ATGG-TTTTGTT--A-A---TGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAAAT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAAAAAAA-
gi|9                          :                             TCAAT-CTAG---CC--AT-AT-T--TT-AGGCAACA-CCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAATC-GGCTGCTGC--ATC-TCGATGG---------AAATT---------------AT-A-TATATAT--A-A---A-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAAA--TTTTAACC-TTC----AA-a





Alignments
lowQualScore                  :                                                                                                                         2222222                               1111                                        1                            222222222222222                          1111     1111111     11111                      22222         1111             11                         333333333333                                                                         3333                1       1   1     1       11           1                  1      11  1  1       44444444      11                    1           333333333     22222                                                            1      1       1           1          1   1         11           4444444444     11                              1             22                      222          1           1           33333333   111111     111  1   4444444444               11           33            1      1            1       1     1       1    11   1      1               33333              11           11   1                 11    1          2222       11   11                66666666666666     1   11  111111      1            2     1     1       2222            11          222      111       11   2222   1               11                 33333333333333333        11              1   44444444444444444444    222   4444444444                                   
lowQualScore                  :                                  3  555 3 6 44 44  3  3 44 99    333     3    3  33   3  44           555555            2222222        4444   44444   333  3  1111      3          55  3 4             2  5 4       1  2 4   4  4 1    555555555555555   4  4   4        4      5555     4444444     22222      2 66            22222         0000  3      6   66        4   9999  555    444444444444     4     0  5 5  0     5     6                1           8    8 5     9999     8          9       0   0     3   7   88           3           1 6    3      88  3  3       88888888      88               1    5  1        666666666   1 66666   22          1   2      3                                 5      5       5       1   5       1  5   5   1     88   1   1   1111111111     88            22 1 1            5             33                 1    111          3    7 0    3 7      1  99999999   999999     333  3   7777777777               88      6    11        7   5      3   1        3       3     3       2    88   0      0     1         22222 1  1     1   33   3 2 0   33   5               1 33    0    1 3   4444   2   88   33 22    1        55555555555555     0   33  555555 3    0    44      0     0   2 5       6666            33     1    777      777       66   1111   0               77      0          77777777777777777        77 1  1         5   66666666666666666666    111   0000000000                                   
lowQualScore                  :                                  .  ... . . .. ..  .  . .. ..    ...     .    .  ..   .  ..           ......            .......        ....   .....   ...  .  ....      .          ..  . .             .  . .       .  . .   .  . .    ...............   .  .   .        .      ....     .......     .....      . ..            .....         ....  .      .   ..        .   ....  ...    ............     .     .  . .  .     .     .                .           .    . .     ....     .          .       .   .     .   .   ..           .           . .    .      ..  .  .       ........      ..               .    .  .        .........   . .....   ..          .   .      .                                 .      .       .       .   .       .  .   .   .     ..   .   .   ..........     ..            .. . .            .             ..                 .    ...          .    . .    . .      .  ........   ......     ...  .   ..........               ..      .    ..        .   .      .   .        .       .     .       .    ..   .      .     .         ..... .  .     .   ..   . . .   ..   .               . ..    .    . .   ....   .   ..   .. ..    .        ..............     .   ..  ...... .    .    ..      .     .   . .       ....            ..     .    ...      ...       ..   ....   .               ..      .          .................        .. .  .         .   ....................    ...   ..........                                   
lowQualScore                  :                                  3  888 3 7 66 66  3  3 66 11    444     1    1  77   1  22           555555            6666666        3333   77777   000  3  5555      6          00  6 0             9  4 6       1  0 4   4  4 7    999999999999999   4  7   4        4      6666     4444444     55555      2 99            66666         1111  2      9   77        4   4444  333    222222222222     4     6  7 7  7     7     7                0           0    0 6     0000     0          0       0   0     3   3   33           3           0 7    3      33  3  3       33333333      33               0    5  0        555555555   0 00000   00          0   5      0                                 0      0       5       0   5       0  5   5   0     55   0   0   5555555555     55            00 0 0            0             00                 0    555          3    3 7    3 3      0  00000000   333333     000  3   0000000000               33      7    77        3   0      3   0        3       3     3       0    33   0      0     2         00000 0  0     0   22   5 5 2   88   0               0 88    0    0 2   5555   5   22   88 00    0        55555555555555     0   88  888888 2    0    55      0     0   5 5       8888            88     0    555      555       55   2222   0               00      7          33333333333333333        55 0  0         5   00000000000000000000    000   5555555555                                   
consensus                     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-GTTTTTTAA--AATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACCT-TTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGAT-GGAAAAAGGGGA--TTT-TGGGTT-AAATGATGTTTTTTT----NATTTNAAAATNGCC-AAAANACTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAATTGAAAACCAGTCCTC--ANNTTTTNAATTTCAA------C-C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 )     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTTAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-GTTTTTT----AATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTNGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATCTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC--TTAAATGATAAACCATAAT-AAANATCGGCTG-ATTTATC-TCGAT-GGAAAAAGGGGA--TTT-TGGGTT-AAATGATGTTTTTTT----NANTTNAAAATNGCC-AAAAAACTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAATTGAAAACCAGTCCTC--ANNTTTTNAATTTCAA------C-C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAG-CAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-GCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1                          :                            GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-GTTTTTT----ATTAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAATTC--ACC--TTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGAT-GGAAAAA-GGGA--TTT-TGGGTT-AAATGATGTTTTTTT----TAATTCAAAATCGGC-AAAACA--AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTC--AATTTTTCAATTTCAA------T-A-T---TCAAA-TGA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TT-TGGGTT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCT--AAATACTTTAA--ATT-GAAGAAAAAATGTATTT--TATA-TAATATACAA-TGTAAACCAG-CCTC--ATATGTCAAATTTCAA------C-CATTAATTAAA-TGATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11                         :                        actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12                         :                                                                taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13                         :                                                                                                                                                                                                                                                                                                           atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--AA--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14                         :                            GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15                         :                         gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16                         :                            GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17                         :                        tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18                         :                                                                                                                                                                                                                                                                                                                                                        aTTTTAAA--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGA-AAAACATAATAAAAAATCGGCTGAATTCATCTTCGAT-GGAAAAGAAGGAATTTT-TTGGTTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCC-AAAAAACTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAAT--AAAA-TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATA-TAA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA-----TACATCTAA---CCCCCCCAtg
gi|3                          : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AAA--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G-TTTTT----AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACCT-TTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATT-GAAGAGAAAATATAATT--CATG-TATTCT----------ACCAGT-CTC--ATATTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-T---TG-TTCTTAAACCAG-TATAA-TTTCG-TTCCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5                          :                            GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAAATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-GGTTTTTAA--AATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6                          :                          taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAAA--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGGTTTTTTAA--AATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAA-TTTTAAATGTTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAAAT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9                          :                             TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAAA--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa





Alignments
lowQualScore                  :                                                                                                                         2222222                               1111                                        1                            222222222222222                          1111     1111111     11111                      22222         1111              11                         333333333333                                                                   11                        1       1   1     1       11           1                  1      11  1  1       44444444      11                    1           333333333     22222                                                            1      1       1             1        1   1         11           4444444444     11                              1             11                        222            22      1           333333333   111       111    555555555555               11             22           1          1        1       1    1            11   1         1            222222             11            11  1                   11   1         2222             1111              666666666666     1   11  111111      1            1     1     1       2222            11          222      111       11   2222   1               11                 33333333333333333        11              1   44444444444444444444    222   4444444444                                   
lowQualScore                  :                                  3  555 3 6 44 44  3  3 44 99    333     3    3  33   3  44           555555            2222222        4444   44444   333  3  1111      3          55  3 4             2  5 4       1  2 4   4  4 1    555555555555555   4  4   4        4      5555     4444444     22222      2 66            22222         0000  3      9  4 00        4   9999  555    444444444444     4     0  5 5  0     5     6                1           8    8 11     3333    8          9       0   0     3   7   88           3           1 6    3      88  3  3       88888888      88               1    5  1        666666666   1 66666   22          1   1      1                                 5      5       5       1     5     1  5   5   1     88   1   1   1111111111     88            22 1 1            5             88                 1      111            00 0    3  7     1  000000000   222  6    333    111111111111               88      6      00           3        1 3        3       3    3          6 88   0         0  1         333333   1     1   33   1 2 0    33  5               1   33   0   1 3   4444    2  888   5555    1         777777777777     0   33  555555 3    0    44      5     0   2 5       6666            33     1    777      777       66   1111   0               44      0          77777777777777777        77 1  1         5   66666666666666666666    111   0000000000                                   
lowQualScore                  :                                  .  ... . . .. ..  .  . .. ..    ...     .    .  ..   .  ..           ......            .......        ....   .....   ...  .  ....      .          ..  . .             .  . .       .  . .   .  . .    ...............   .  .   .        .      ....     .......     .....      . ..            .....         ....  .      .  . ..        .   ....  ...    ............     .     .  . .  .     .     .                .           .    . ..     ....    .          .       .   .     .   .   ..           .           . .    .      ..  .  .       ........      ..               .    .  .        .........   . .....   ..          .   .      .                                 .      .       .       .     .     .  .   .   .     ..   .   .   ..........     ..            .. . .            .             ..                 .      ...            .. .    .  .     .  .........   ...  .    ...    ............               ..      .      ..           .        . .        .       .    .          . ..   .         .  .         ......   .     .   ..   . . .    ..  .               .   ..   .   . .   ....    .  ...   ....    .         ............     .   ..  ...... .    .    ..      .     .   . .       ....            ..     .    ...      ...       ..   ....   .               ..      .          .................        .. .  .         .   ....................    ...   ..........                                   
lowQualScore                  :                                  3  888 3 7 66 66  3  3 66 11    444     1    1  77   1  22           555555            6666666        3333   77777   000  3  5555      6          00  6 0             9  4 6       1  0 4   4  4 7    999999999999999   4  7   4        4      6666     4444444     55555      2 99            66666         1111  2      2  4 66        4   4444  333    222222222222     4     6  7 7  7     7     7                0           0    0 00     6666    0          0       0   0     3   3   33           3           0 7    3      33  3  3       33333333      33               0    5  0        555555555   0 00000   00          0   0      0                                 0      0       5       0     5     0  5   5   0     55   0   0   5555555555     55            00 0 0            0             00                 0      555            77 7    3  3     0  000000000   333  7    000    333333333333               33      7      77           3        0 3        3       3    3          7 33   0         0  2         000000   0     0   22   0 5 2    88  0               0   88   0   0 2   5555    5  222   8888    0         555555555555     0   88  888888 2    0    55      5     0   5 5       8888            88     0    555      555       55   2222   0               33      7          33333333333333333        55 0  0         5   00000000000000000000    000   5555555555                                   
consensus                     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCCAAAAA-CCGGAA-ATTGAAGANAAA--TTA---ATTTGGTTGTAACCTTACAA-T---A--A---CAAGCCTCATATTTT--AAATTTCAACCTTT-AAATGATAAAC-ATAATAAANA-TCGGCTGA-TTTATCT-CGAT-GGAAAAAGGGGA--TTT-TGGGTTAAA-TGATGTTTTTTTNA----TTTNAAAATNGCC-AAAANACTGGAAA--TTGGAAGAGAAAATATAANTCA--TGT-ATTNTACAATTGAAAACCAGTCCTCATA--TTTTNAATTTCAAC------C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 )     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCCAAAAA-CCGGAA-ATTGAAGANAAA--TTA---ATTTGGTTGTAACCTTACAA-T---A--A---CAAGCCTCATATTTT--AAATTTCAACCTTT-AAATGATAAAC-ATAATAAANA-TCGGCTGA-TTTATCT-CGAT-GGAAAAAGGGGA--TTT-TGGGTTAAA-TGATGTTTTTTTNA----TTTNAAAATNGCC-AAAANACTGGAAA--TTGGAAGAGAAAATATAANTCA--TGT-ATTNTACAATTGAAAACCAGTCCTCANN--TTTTNAATTTCAAC------C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1                          :                            GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTACAA-TGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTCAA---AAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTACAA-T---ATTA---CAAGCCTCATATTTTTGAAATTC--ACCTT--AAATGATAAACCATAATAAATA-TCGGCTGA-TTTATCT-CGAT-GGAAAAAGGG-A--TTT-TGGGTTAAA-TGATGTTTTTTTTA----ATTCAAAATCGGC-AAAACA--AGGAA--TTGGGAGAGAAAATATAAATCA--TGT-ATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAAT------A-T---TCAAA-TGA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TT-TGGGTTAAA-TGTTGGTTTTTT-A----TTTGAAAATAGCT--AAATACTTTAAA--TT-GAAGAAAAAATGTATTTTA--TAT-AATATACAA-TGTAAACCAG-CCTCATA--TGTCAAATTTCAAC------CATTAATTAAA-TGATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11                         :                        actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12                         :                                                                taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13                         :                                                                                                                                                                                                                                                                                                           atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14                         :                            GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15                         :                         gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16                         :                            GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17                         :                        tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18                         :                                                                                                                                                                                                                                                                                                                                                        aTTTTAA-A--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCCAAAA---CGGAA-AT-GAAGAAAA----TA---ATT--GTT--AAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAAC-ATAATAAAAAATCGGCTGAATTCATCTTCGAT-GGAAAAGAAGGAATTTT-TTGGTTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCC-AAAAAACTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAAT--AAAAT-AGTC-TCATAATTTTTCAATTCTAATTATATTC-TA--TTATA-TAA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA-----TACATCTAA---CCCCCCCAtg
gi|3                          : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gtATCGCCAAAAA-CTGGAA-ATTGAAGAGAAAATTTA---ATCTG--TGTAATCT-ACAA-T---A--AAAACAAGCCTCATGTTTT--AAATTTCAACCTTT-AAATGATAAAC-ACAATAAAGA-TCGACTGA-TTTTTCT-CGATGGGAAGAAGGGGA--TTTGGGGGTTAAG-TTATGTTTTTTTCA----TATCAAAATCGCCAAAAAAACTGGAGA--TT-GAAGAGAAAATATAATTCA--TGT-ATTCT----------ACCAGT-CTCATA--TTTTAAATTTCAACA-----T-T---TTAAATTGA--TT--A-A-T---TG-TTCTTAAACCAG-TATAA-TTTCG-TTCCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5                          :                            GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6                          :                          taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9                          :                             TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa





Alignments
lowQualScore                  :                                                                                                                         2222222                               1111                                        1                            222222222222222                          1111     1111111     11111                      22222         1111              11                         333333333333                                                                   11                        1       1   1     1       11           1                  1      11  1  1       44444444      11                    1           333333333     22222                                                            1      1       1           1          1   1         11           4444444444     11                              1             11                      222          1           1           33333333    11111     111  1   4444444444               11           1             1      1            1       1     1       1    11   1      1               33333              1            11                     11    1           222       11      11             66666666666666     1   11  111111      1            1     1     1       2222            11          222      111       11   2222   1               11                 33333333333333333        11              1   44444444444444444444    222   4444444444                                   
lowQualScore                  :                                  3  555 3 6 44 44  3  3 44 99    333     3    3  33   3  44           555555            2222222        4444   44444   333  3  1111      3          55  3 4             2  5 4       1  2 4   4  4 1    555555555555555   4  4   4        4      5555     4444444     22222      2 66            22222         0000  3      9  4 00        4   9999  555    444444444444     4     0  5 5  0     5     6                1           8    8 11     3333    8          9       0   0     3   7   88           3           1 6    3      88  3  3       88888888      88               1    5  1        666666666   1 66666   22          1   1      1                                 5      5       5       1   5       1  5   5   1     88   1   1   1111111111     88            22 1 1            5             88                 1    111          3    7 0    3 7      1  99999999    88888     333  3   7777777777               88   7    7  3             3      3   1        3       3     3       2    88   0      0     1         22222    1     1   0   44 2 0   33   99              1 33    0    1 3    777   2   88      33    1        55555555555555     0   33  555555 3    0    44      5     0   2 5       6666            33     1    777      777       66   1111   0               44      0          77777777777777777        77 1  1         5   66666666666666666666    111   0000000000                                   
lowQualScore                  :                                  .  ... . . .. ..  .  . .. ..    ...     .    .  ..   .  ..           ......            .......        ....   .....   ...  .  ....      .          ..  . .             .  . .       .  . .   .  . .    ...............   .  .   .        .      ....     .......     .....      . ..            .....         ....  .      .  . ..        .   ....  ...    ............     .     .  . .  .     .     .                .           .    . ..     ....    .          .       .   .     .   .   ..           .           . .    .      ..  .  .       ........      ..               .    .  .        .........   . .....   ..          .   .      .                                 .      .       .       .   .       .  .   .   .     ..   .   .   ..........     ..            .. . .            .             ..                 .    ...          .    . .    . .      .  ........    .....     ...  .   ..........               ..   .    .  .             .      .   .        .       .     .       .    ..   .      .     .         .....    .     .   .   .. . .   ..   ..              . ..    .    . .    ...   .   ..      ..    .        ..............     .   ..  ...... .    .    ..      .     .   . .       ....            ..     .    ...      ...       ..   ....   .               ..      .          .................        .. .  .         .   ....................    ...   ..........                                   
lowQualScore                  :                                  3  888 3 7 66 66  3  3 66 11    444     1    1  77   1  22           555555            6666666        3333   77777   000  3  5555      6          00  6 0             9  4 6       1  0 4   4  4 7    999999999999999   4  7   4        4      6666     4444444     55555      2 99            66666         1111  2      2  4 66        4   4444  333    222222222222     4     6  7 7  7     7     7                0           0    0 00     6666    0          0       0   0     3   3   33           3           0 7    3      33  3  3       33333333      33               0    5  0        555555555   0 00000   00          0   0      0                                 0      0       5       0   5       0  5   5   0     55   0   0   5555555555     55            00 0 0            0             00                 0    555          3    3 7    3 3      0  00000000    77777     000  3   0000000000               33   3    3  3             3      3   0        3       3     3       0    33   0      0     2         00000    0     0   0   22 5 2   88   00              0 88    0    0 2    555   5   22      88    0        55555555555555     0   88  888888 2    0    55      5     0   5 5       8888            88     0    555      555       55   2222   0               33      7          33333333333333333        55 0  0         5   00000000000000000000    000   5555555555                                   
consensus                     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGAT-GGAAAAAGGGGA--TTT-TGGGTT-AAATGATGTTTTTTT----NATTTNAAAATNGCC-AAAANACTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAAT-GAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 )     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGAT-GGAAAAAGGGGA--TTT-TGGGTT-AAATGATGTTTTTTT----NATTTNAAAATNGCC-AAAANACTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAATTGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAA-TGA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATAC--TACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1                          :                            GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAA-TTCA--C-CTTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGAT-GGAAAAA-GGGA--TTT-TGGGTT-AAATGATGTTTTTTT----TAATTCAAAATCGGC-AAAACA--AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAA------T-A-T---TCAAA-TGA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TT-TGGGTT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCT-AAA-TACTTTAA--ATTG-AAGAAAAAATGTATTT--TATA-TAATATACAAT-GTAAACCAG-CCTCATA--TGTCAAATTTCAA------C-CATTAATTAAA-TGATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11                         :                        actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12                         :                                                                taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13                         :                                                                                                                                                                                                                                                                                                           atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14                         :                            GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15                         :                         gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16                         :                            GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17                         :                        tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18                         :                                                                                                                                                                                                                                                                                                                                                        aTTTTAA-A--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAA-CATAATAAAAAATCGGCTGAATTCATCTTCGAT-GGAAAAGAAGGAATTTT-TTGGTTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCC-AAAAAACTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAAT--AAAA-TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATA-TAA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA-----TACATCTAA---CCCCCCCAtg
gi|3                          : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACC-TTTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATT-GAAGAGAAAATATAATT--CATG-TATTCT----------ACCAGT-CTCATA--TTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-T---TG-TTCTTAAACCAG-TATAA-TTTCG-TTCCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5                          :                            GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6                          :                          taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9                          :                             TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa





Alignments
lowQualScore                  :                                                                                                                         2222222                               1111                                        1                            222222222222222                          1111     1111111     11111                      22222         1111              11                         333333333333                                                                   11                        1       1   1     1       11           1                  1      11  1  1       44444444      11                    1           333333333     22222                                                            1      1       1           1          1   1         11           4444444444     11                              1             11                      222          1           1           33333333    11111     111  1   4444444444               11           1             1      1            1       1          1  1    11       1  1               33333                    11     11    1                11    1        1111111111           11             66666666666666      1  11  111111      1            1     1             2222            11          222      111       11   2222   1               11                 33333333333333333        11              1   44444444444444444444    222   4444444444                                   
lowQualScore                  :                                  3  555 3 6 44 44  3  3 44 99    333     3    3  33   3  44           555555            2222222        4444   44444   333  3  1111      3          55  3 4             2  5 4       1  2 4   4  4 1    555555555555555   4  4   4        4      5555     4444444     22222      2 66            22222         0000  3      9  4 00        4   9999  555    444444444444     4     0  5 5  0     5     6                1           8    8 11     3333    8          9       0   0     3   7   88           3           1 6    3      88  3  3       88888888      88               1    5  1        666666666   1 66666   22          1   1      1                                 5      5       5       1   5       1  5   5   1     88   1   1   1111111111     88            22 1 1            5             88                 1    111          3    7 0    3 7      1  99999999    88888     333  3   7777777777               88   7    7  3             3      3   1        3       3          3  2    88       0  0     1         22222    1     1      44 22 0   33    9              1 33    0    1   6666666666   888     33    1        55555555555555      0  33  555555  333 0    44      5     0   2 3 3     6666            33     1    777      777       66   1111   0               44      0          77777777777777777        77 1  1         5   66666666666666666666    111   0000000000                                   
lowQualScore                  :                                  .  ... . . .. ..  .  . .. ..    ...     .    .  ..   .  ..           ......            .......        ....   .....   ...  .  ....      .          ..  . .             .  . .       .  . .   .  . .    ...............   .  .   .        .      ....     .......     .....      . ..            .....         ....  .      .  . ..        .   ....  ...    ............     .     .  . .  .     .     .                .           .    . ..     ....    .          .       .   .     .   .   ..           .           . .    .      ..  .  .       ........      ..               .    .  .        .........   . .....   ..          .   .      .                                 .      .       .       .   .       .  .   .   .     ..   .   .   ..........     ..            .. . .            .             ..                 .    ...          .    . .    . .      .  ........    .....     ...  .   ..........               ..   .    .  .             .      .   .        .       .          .  .    ..       .  .     .         .....    .     .      .. .. .   ..    .              . ..    .    .   ..........   ...     ..    .        ..............      .  ..  ......  ... .    ..      .     .   . . .     ....            ..     .    ...      ...       ..   ....   .               ..      .          .................        .. .  .         .   ....................    ...   ..........                                   
lowQualScore                  :                                  3  888 3 7 66 66  3  3 66 11    444     1    1  77   1  22           555555            6666666        3333   77777   000  3  5555      6          00  6 0             9  4 6       1  0 4   4  4 7    999999999999999   4  7   4        4      6666     4444444     55555      2 99            66666         1111  2      2  4 66        4   4444  333    222222222222     4     6  7 7  7     7     7                0           0    0 00     6666    0          0       0   0     3   3   33           3           0 7    3      33  3  3       33333333      33               0    5  0        555555555   0 00000   00          0   0      0                                 0      0       5       0   5       0  5   5   0     55   0   0   5555555555     55            00 0 0            0             00                 0    555          3    3 7    3 3      0  00000000    77777     000  3   0000000000               33   3    3  3             3      3   0        3       3          3  0    33       0  0     2         00000    0     0      22 55 2   88    0              0 88    0    0   8888888888   222     88    0        55555555555555      0  88  888888  888 0    55      5     0   5 2 2     8888            88     0    555      555       55   2222   0               33      7          33333333333333333        55 0  0         5   00000000000000000000    000   5555555555                                   
consensus                     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 )     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1                          :                            GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAA-TTCA--C-CTTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGATGGAAA-AA-GGGA--TTTTGGG-TT-AAATGATGTTTTTTT----TAATTCAAAATCGGCAAAACA---AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAA------T-A-T---TCAAAT-GA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTGGG-TT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCTAAA-TA-CTTTAA--ATTG-AAGAAAAAATGTATTT--TATA-TAATATACAA-TGTAAACCAG-CCTCATA--TGTCAAATTTCAA------C-CATTAATTAAAT-GATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11                         :                        actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12                         :                                                                taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13                         :                                                                                                                                                                                                                                                                                                           atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14                         :                            GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15                         :                         gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16                         :                            GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17                         :                        tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18                         :                                                                                                                                                                                                                                                                                                                                                        aTTTTAA-A--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAA-CATAATAAAAAATCGGCTGAATTCATCTTCGATGGAAA-AGAAGGAATTTTTTGG-TTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCCAAAAAA-CTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAA-TAAAA--TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATAT-AA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA---T--ACATCTAA---CCCCCCCAtg
gi|3                          : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACC-TTTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATTG-AAGAGAAAATATAATT--CATG-TATTCTAC----------CAGTC-TCATA--TTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-TT---G-TTCTTAAACCAG-TATAA-TTTCGTT-CCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5                          :                            GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6                          :                          taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9                          :                             TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa





Alignments
lowQualScore                  :                                                                                                                         2222222                               1111                                        1                            222222222222222                          1111     1111111     11111                      22222         1111              11                         333333333333                                                                   11                        1       1   1     1       11           1                  1      11  1  1       44444444      11                    1           333333333     22222                                                            1      1       1           1          1   1         11           4444444444     11                              1             11                      222          1           1           33333333    11111     111  1   4444444444               11           1             1      1            1       1          1  1    11       1  1               33333                    11     11    1                11    1        1111111111           11             66666666666666      1  11  111111      1            1     1             2222            11          222      111       11   2222   1               11                 33333333333333333        11              1   44444444444444444444    222   4444444444                                   
lowQualScore                  :                                  3  555 3 6 44 44  3  3 44 99    333     3    3  33   3  44           555555            2222222        4444   44444   333  3  1111      3          55  3 4             2  5 4       1  2 4   4  4 1    555555555555555   4  4   4        4      5555     4444444     22222      2 66            22222         0000  3      9  4 00        4   9999  555    444444444444     4     0  5 5  0     5     6                1           8    8 11     3333    8          9       0   0     3   7   88           3           1 6    3      88  3  3       88888888      88               1    5  1        666666666   1 66666   22          1   1      1                                 5      5       5       1   5       1  5   5   1     88   1   1   1111111111     88            22 1 1            5             88                 1    111          3    7 0    3 7      1  99999999    88888     333  3   7777777777               88   7    7  3             3      3   1        3       3          3  2    88       0  0     1         22222    1     1      44 22 0   33    9              1 33    0    1   6666666666   888     33    1        55555555555555      0  33  555555  333 0    44      5     0   2 3 3     6666            33     1    777      777       66   1111   0               44      0          77777777777777777        77 1  1         5   66666666666666666666    111   0000000000                                   
lowQualScore                  :                                  .  ... . . .. ..  .  . .. ..    ...     .    .  ..   .  ..           ......            .......        ....   .....   ...  .  ....      .          ..  . .             .  . .       .  . .   .  . .    ...............   .  .   .        .      ....     .......     .....      . ..            .....         ....  .      .  . ..        .   ....  ...    ............     .     .  . .  .     .     .                .           .    . ..     ....    .          .       .   .     .   .   ..           .           . .    .      ..  .  .       ........      ..               .    .  .        .........   . .....   ..          .   .      .                                 .      .       .       .   .       .  .   .   .     ..   .   .   ..........     ..            .. . .            .             ..                 .    ...          .    . .    . .      .  ........    .....     ...  .   ..........               ..   .    .  .             .      .   .        .       .          .  .    ..       .  .     .         .....    .     .      .. .. .   ..    .              . ..    .    .   ..........   ...     ..    .        ..............      .  ..  ......  ... .    ..      .     .   . . .     ....            ..     .    ...      ...       ..   ....   .               ..      .          .................        .. .  .         .   ....................    ...   ..........                                   
lowQualScore                  :                                  3  888 3 7 66 66  3  3 66 11    444     1    1  77   1  22           555555            6666666        3333   77777   000  3  5555      6          00  6 0             9  4 6       1  0 4   4  4 7    999999999999999   4  7   4        4      6666     4444444     55555      2 99            66666         1111  2      2  4 66        4   4444  333    222222222222     4     6  7 7  7     7     7                0           0    0 00     6666    0          0       0   0     3   3   33           3           0 7    3      33  3  3       33333333      33               0    5  0        555555555   0 00000   00          0   0      0                                 0      0       5       0   5       0  5   5   0     55   0   0   5555555555     55            00 0 0            0             00                 0    555          3    3 7    3 3      0  00000000    77777     000  3   0000000000               33   3    3  3             3      3   0        3       3          3  0    33       0  0     2         00000    0     0      22 55 2   88    0              0 88    0    0   8888888888   222     88    0        55555555555555      0  88  888888  888 0    55      5     0   5 2 2     8888            88     0    555      555       55   2222   0               33      7          33333333333333333        55 0  0         5   00000000000000000000    000   5555555555                                   
consensus                     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 )     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1                          :                            GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GGTTTT-T---A---AT-A--AAA-AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAA-TCGAG-GT-CTGTA-TCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAA-TTCA--C-CTTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGATGGAAA-AA-GGGA--TTTTGGG-TT-AAATGATGTTTTTTT----TAATTCAAAATCGGCAAAACA---AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAA------T-A-T---TCAAAT-GA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTGGG-TT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCTAAA-TA-CTTTAA--ATTG-AAGAAAAAATGTATTT--TATA-TAATATACAA-TGTAAACCAG-CCTCATA--TGTCAAATTTCAA------C-CATTAATTAAAT-GATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11                         :                        actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA------------A-TA----AAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGGTTTTT-TT--AAT-AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12                         :                                                                taCC-AGCAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCA--T-G--CAAGATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT------------------------A-ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13                         :                                                                                                                                                                                                                                                                                                           atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAAT-------CAA--CATAATAAAAACCG-G-CTGCTGTA-TCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14                         :                            GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAA-AACCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCA--T-A--CAAGACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15                         :                         gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCT-CACTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16                         :                            GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAA-AACCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT-T----CAAGATAA-C--ATA-TTC-CAAAAAGA-T
gi|17                         :                        tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAA-AT---ATTGGTTATTCA--T-G--CA--GAAA-T--ATg
gi|18                         :                                                                                                                                                                                                                                                                                                                                                        aTTTTAA-A--TTTTAATTATGT----AA-A-TGAT-------CAA--CACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAA-CATAATAAAAAATCGGCTGAATTCATCTTCGATGGAAA-AGAAGGAATTTTTTGG-TTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCCAAAAAA-CTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAA-TAAAA--TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATAT-AA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA---T--ACATCTAA---CCCCCCCAtg
gi|3                          : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTT-AACTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATT-TCTAA-T-G--CAAGAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGGAA-TTTTGGG-TTAA-ATG-AT-GTTTTT-TTT-A---AT-AT-AAATATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAAT-------TA--GCATAA-AGAAATCG-G-CTCCTGTA-TATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACC-TTTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATTG-AAGAGAAAATATAATT--CATG-TATTCTAC----------CAGTC-TCATA--TTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-TT---G-TTCTTAAACCAG-TATAA-TTTCGTT-CCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5                          :                            GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-TAG--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-GTTTTT-TT--AAATAT-G--AAA-ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TGACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGAT-------TGT-GCATAA-AAAAATCG-G-CTG-TGTA-TCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6                          :                          taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CAAGAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-GTTTTT-TTTAA---AT-ATGAAA-ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAA-TG--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------T-G-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACAT-AACCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCA--T-G--CGAGAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-GGTTTT-GT--AT--AT-A--AAA-AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAA-TG--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGACAACACCATAA---ATAA-AAAAAACA-GTCTGCTGTA-T
gi|8                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACA-AACCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCATGC-GATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-GGTTTTGTT--A---ATGA--AAA-ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAATGA--AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGAT-------CAACTCATAA-AAAAA
gi|9                          :                             TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAA-CACCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT---G--CAAGAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT---------------AT-ATATAT-AT--A---AA-A--TAA-ATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------------CATAA-AAAAAa


blockSeqs                     :                                  G  GGT A G TA TT  A  G GT TT    TTA     T    A  A    .  .            TTTTAT            TGCGAT         TAC    ATACC   CAA  A  TTAT      C          TA  T .             G  A A       G  A C   T  G T    TTTAAATATG        T  C   A        .      TGAA     CACCCCA     CAGAA      C TC            TGAC          CTG   A      T  T TT        A   TTAA  AC     AACACCATAA       T        . T        A     A                G           T    G TT     TTAA    A          G       G   .     T   A   AG           .           G G    G      .   A  C       TATCAGCC      TG               A    .  G        .           T .       GG          T   T      C                                 C      C       .       A   A       C  .   .   A     .    T   A   .              .             CT G T            .             .                  T    AAT          .    A      . T      A  AATTT       TGT       CT   A   GAAAA                    .    T    A  T             .      A   A        A       T          G  A    AT       G  A     T         AAAAA    G     A      AA AC     AG    A              T CA    T    A   AATGTAAAC    CC      AT    A        TTATATTCTA          T  TG  AGAA    AAA C    CA      A     .   C T T     ACT             TA     T    G        AAA       TG   GAAT   A               GG                 TACTGTACATCTAAGAC        CC C  A         T   TCGAGGTTATGATATAAGTA    GTA   GTGTTTGTGT
blockSeqs                     :                                  .  .   . . .  .   .  . .  T     CT      .    .  A    .  .            TTT               TTAG           CT     TAG     AAA  .  AA        .          .   . .             A  A A       G  A .   .  . T    TTAAATATG         .  T   C        .      AA       .           .          C .             TGA           C     A      C  . T         .   .     GA     CAACT            .        . .        .     .                T           .    . .      TAAA    .          .       .   .     .   .   .            .           A G    .      .   .  .       .             .                                                                                                                                                                                                                                                                                   .    .      . .      G  T           GT        T    .   AAAAA                    .    T    A  .             .      .   G        .       .          .  G    .        .  .     G         C        A     G      AA C      .     .              G .     .    A   AATAAAA      TC      .     C        CCATTAA             .  .   ACAC    AAT .    AA      A     .   C T T     GAC             .      G    .        .         G    .      .               A                  TACATCTAA                                                                            
blockSeqs                     :                                  .  .   . . .  .   .  . .  C     CC      .    .  T    .  .            ATT               ATG            T      TAC     CAA  .  AT        .          .   . .             G  A A       G  A .   .  . T    TTAATATA          .  C   A        .      .        .           .          A .             TG            C     A      C  . .         .   .     A      TGTG             .        . .        .     .                A           .    . .      TAAA    .          .       .   .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        .  .     A         .        C     C      T  C      .     .              T .     .    C   .            TC      .     A        CATT                .  .   AA      .   .    TA      .     .   . . .     GT              .      T    .        .         .    .      .                                                                                                                       
blockSeqs                     :                                  .  .   . . .  .   .  . .  C     AA      .    .  A    .  .            AAT               TG             C      TTC     CAG  .  AT        .          .   . .             G  . A       G  A .   .  . T    TTTAATAT          .  A   A        .      .        .           .          A .             TG            G     A      A  . .         .   .     A      CAA              .        . .        .     .                A           .    . .      A       .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
blockSeqs                     :                                  .  .   . . .  .   .  . .  T     CT      .    .  A    .  .            AAT               TG             T      TAT     CAG  .  AT        .          .   . .             T  . A       G  A .   .  . G    GTTAATGA          .  A   C        .      .        .           .          T .             TG            G     A      T  . .         .   .     A      CAA              .        . .        .     .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
blockSeqs                     :                                  .  .   . . .  .   .  . .  T     AA      .    .  T    .  .            TTT               TA             C      TAC     CAA  .  AT        .          .   . .             T  . .       .  T .   .  . G    GTATATA           .  T   A        .      .        .           .          T .             TG            C     .      T  . .         .   .     A      TAG              .        . .        .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
blockSeqs                     :                                  .  .   . . .  .   .  . .  T     TT      .    .  A    .  .            TTT               TT             T      TAC     CAA  .  A         .          .   . .             .  . .       .  . .   .  . T    ATAAAA            .  C   C        .      .        .           .          T .             TA            C     .      .  . .         .   .     A      TGG              .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
blockSeqs                     :                                  .  .   . . .  .   .  . .  T     CT      .    .  A    .  .            TTT               TG             T      TAC     .    .  .         .          .   . .             .  . .       .  . .   .  . .    .                 .  C   .        .      .        .                                                                 .  . .         .   .     .      .                .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
blockSeqs                     :                                  .  .   . . .  .   .  . .  .     CT      .    .  A    .  .            TTT               TG             T      T       .    .  .         .          .   . .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
blockSeqs                     :                                  .  .   . . .  .   .  . .  .     AT      .    .  C    .  .            AT                TG             T      .       .    .  .         .          .   .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
blockSeqs                     :                                  .  .   . . .  .   .  . .  .     CA      .    .  A    .  .            AT                TG             .      .       .    .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
blockSeqs                     :                                                                  AA      .    .  .    .  .            .                 .              .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         


blockSeqCons                  :                                                                                  A*      **                             TG*****                                                                                                        TTAATATA*******                                                                          TG***         C***                                         TAG*********                                                                          TAAA
originalCons                  :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT-T-G--CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTT-TT--A---AT-A--AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGAT-------TAA-GCATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
finalCons                     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCT-AACCT-CAAA-CTA-ATT-GC--AACAGAAATGATTT---ATTGATTATTCATG-----CAAGAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-GTTTTTTTAATATA-------AAA-ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATG---AAAACCAATC---TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGATTAG---------CATAA-AAAAATCG-G-CTGCTGTA-TCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA





Alignments
lowQualScore                  :                                                                                                                                                                                                            2                             222222                                 1111     1111111     11111                         11         1111              11                           111111111111                                                                  11                        1       1   1     1       11           1                  1      11  1  1       44444444      11                    1           333333333     22222                                                            1      1       1           1          1   1         11           4444444444     11                              1             11                      222          1           1           33333333    11111     111  1   4444444444               11           1             1      1            1       1          1  1    11       1  1               33333                    11     11    1                11    1        1111111111           11             66666666666666      1  11  111111      1            1     1             2222            11          222      111       11   2222   1               11                 33333333333333333        11              1   44444444444444444444    222   4444444444                                   
lowQualScore                  :                                  3  555 3 6 44 44  3  3 44 99    00  3   3    3  33   3  44           2 5555             77    6666     4444   44444   333  3  9999      3          55  3 4             2  0      1     2 4   4  7777    000000        777  4   4        4      5555     4444444     22222      2 66             5 11         0000  3      9  4 00        4   9999  555    0 999999999999    4     0  5 5  0    5      6                1           8    8 11     3333    8          9       0   0     3   7   88           3           1 6    3      88  3  3       88888888      88               1    5  1        666666666   1 66666   22          1   1      1                                 5      5       5       1   5       1  5   5   1     88   1   1   1111111111     88            22 1 1            5             88                 1    111          3    7 0    3 7      1  99999999    88888     333  3   7777777777               88   7    7  3             3      3   1        3       3          3  2    88       0  0     1         22222    1     1      44 22 0   33    9              1 33    0    1   6666666666   888     33    1        55555555555555      0  33  555555  333 0    44      5     0   2 3 3     6666            33     1    777      777       66   1111   0               44      0          77777777777777777        77 1  1         5   66666666666666666666    111   0000000000                                   
lowQualScore                  :                                  .  ... . . .. ..  .  . .. ..    ..  .   .    .  ..   .  ..           . ....             ..    ....     ....   .....   ...  .  ....      .          ..  . .             .  .      .     . .   .  ....    ......        ...  .   .        .      ....     .......     .....      . ..             . ..         ....  .      .  . ..        .   ....  ...    . ............    .     .  . .  .    .      .                .           .    . ..     ....    .          .       .   .     .   .   ..           .           . .    .      ..  .  .       ........      ..               .    .  .        .........   . .....   ..          .   .      .                                 .      .       .       .   .       .  .   .   .     ..   .   .   ..........     ..            .. . .            .             ..                 .    ...          .    . .    . .      .  ........    .....     ...  .   ..........               ..   .    .  .             .      .   .        .       .          .  .    ..       .  .     .         .....    .     .      .. .. .   ..    .              . ..    .    .   ..........   ...     ..    .        ..............      .  ..  ......  ... .    ..      .     .   . . .     ....            ..     .    ...      ...       ..   ....   .               ..      .          .................        .. .  .         .   ....................    ...   ..........                                   
lowQualScore                  :                                  3  888 3 7 66 66  3  3 66 11    33  1   1    1  77   1  22           8 8888             33    5555     3333   77777   000  3  3333      6          00  6 0             9  9      9     0 4   4  9999    222222        888  7   4        4      6666     4444444     55555      2 99             0 99         1111  2      2  4 66        4   4444  333    3 333333333333    4     6  7 7  7    7      7                0           0    0 00     6666    0          0       0   0     3   3   33           3           0 7    3      33  3  3       33333333      33               0    5  0        555555555   0 00000   00          0   0      0                                 0      0       5       0   5       0  5   5   0     55   0   0   5555555555     55            00 0 0            0             00                 0    555          3    3 7    3 3      0  00000000    77777     000  3   0000000000               33   3    3  3             3      3   0        3       3          3  0    33       0  0     2         00000    0     0      22 55 2   88    0              0 88    0    0   8888888888   222     88    0        55555555555555      0  88  888888  888 0    55      5     0   5 2 2     8888            88     0    555      555       55   2222   0               33      7          33333333333333333        55 0  0         5   00000000000000000000    000   5555555555                                   
consensus                     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT--GCAA----GAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-AT-G-TTTTT-TT--AATATAAAA---ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAAT-G--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGATCA-G--C-------ATAA-AAAAATCG-G-CTGCTGT-ATCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
Reference ( family-2010 )     :                            GTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT--GCAA----GAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-TTTTT-TT--AATATAAAA---ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAAT-G--AAAACCAAT-C--TCAAATTTTCAA-A--TTTCAACC-TTT----AA-A-CGATTA-G--C-------ATAA-AAAAATCG-G-CTGCTGT-ATCTCG-ATGGGAAAATGGGAATNTTGGGGTAAAA-TGAC-G--TTTTTTAAAATAC-GAAAATCGCCGCAAAATT-GGA-AATTG-AAGAAAA--AATATAATTTA-TGTAACCTACANTGAAAA-CCAGTC--TC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAANTCGGACTNTTGTTTCCTTGGTGGGGGAANGGGGATTTTNNGTTAAATGGTNGTTNTTTTTTNAATAATAAAATCGCCAAAAACTGGAAACTGAAGCAGAAAACTATAACTTGTGTAACNTACAAATGAAANCAAGCCATCANATTTTTAAATNTCANTCTTTAAATGAAGACAATAATAAAGATCGGCTNNTNCNTCTCGGTGGGAAGAAGGGAATTTTCTTGGTTAAATGGTGTTTTTCNACTCAATAAAAATCGCC-AAAAACCGGAA-ATTGAAGANAAA--TT---AATTTGGTTGTAACCTTAC-AAT---A--A---CAAGCCTCATATTTT--AAATTTCAACC-TTTAAATGATAAA-CATAAT-AAANATCGGCTG-ATTTATC-TCGATGGAAA-AAGGGGA--TTTTGGG-TT-AAATGATGTTTTTTT----NATTTNAAAATNGCCAAAANA-CTGGAA--ATTGGAAGAGAAAATATAANT--CATG-TATTNTACAA-TGAAAACCAGTCCTCATA--TTTTNAATTTCAA------C-C-T---TTAAAT-GA--TC--A-A-TTAATG-TTTTTAAACCAGACAGAA-TTTCGTTTCCTGGG-C-GTAATTTTTGGG--GGGGGNTCTT---TTTTTT---AATAAAA-GTTG----TTG-AAATTCTAAGAAAAA-NCTCCACGATCTTTTTAATACT--ACATCTAA-ACCCCCCCCACCCNCANCAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGGAAAA
gi|1                          :                            GTCA-T-CT---A-GGC--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CTTAATTTGCCAAACGAAAATTATTT---ATTGATTAT-CATT-GCAA----GAAAA-T--ATA-TAC-AAACAACA-TA--ATAAAAA--CGGCGCCTGT--AT-TATCGATGGGAAAATGGGAAATTTTGGGGTTAA-ATG-AT-G-GTTTT-T----A-ATAAAA---AT-GCCAAAAACTGGGAAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCCTACAATTG--AAAACCAATGT--TCAAATGTTCAA-A--TTTCAACC-TTT----AA-A-CGATTAAG--C-------ATAA-AAAA-TCGAG-GT-CTGT-ATCTCG-ATGGGAAAATGTGAATTTTGGGGTAAAA-TGAC-G--TTTTTTAT--TAC-GAAAATCGCCAAAAAATT-GGAGAATTG-AAGAAAA--AATATAATTTAATGTAACATACATT-AAAA-CCAGTCCATC-AA-TTTTAAA--------TTTCAA--ATCTACATATTAAAATTCGAACTCTTGTTTCCTTGGTGGGGAAAAGGGGATTTTCTGTTAAATGGTGGTTGTTTTTTAAATAATAAAATCGCCAAAAACTGGAAACTGAAG-AGAAAA-TATAATTTGTGTAACCTAC-AATGAAAACAAGCCATCATATTTTTAAATGTCATTCTTTAAATGAAGACAATAATAAAAATCGGCTGATTCATCTCGATGAAAAGAAGGGAATTTTTTTGGTTAAATGATGTTTTTTAATTC---AAAAATCGCCAAAAAACTGGAAGATTAAAGATAAA--TTATAAATTTGGTTGTAACCTTAC-AAT---ATTA---CAAGCCTCATATTTTTGAAA-TTCA--C-CTTAAATGATAAACCATAAT-AAATATCGGCTG-ATTTATC-TCGATGGAAA-AA-GGGA--TTTTGGG-TT-AAATGATGTTTTTTT----TAATTCAAAATCGGCAAAACA---AGGA--ATTGGGAGAGAAAATATAAAT--CATG-TATTCTACAATTGAAAACCAGTCCTCAAT--TTTTCAATTTCAA------T-A-T---TCAAAT-GA--TC--A-A-TTAATG-TTTTT-AACCAG-CAGAATTTTCGTTTCCTGG----GTAAATTTTGGG--GGGGGGTCTTTGCTTTTTT---AATAAAA-AGTG----TTG-AAATTCTAAGAAAAA-CCTTCACAATCTTTTTATTAC----------A-ATCCCCCCCA--CATATCAACAAAAA-AAA-------TAT----------CCGC---CGT----------GTATGTGTGTGAAAATAACATTTGAGGTCGGAAAA
gi|10                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTGGG-TT-AAATGTTGGTTTTTT-----ATTTGAAAATAGCTAAA-TA-CTTTAA--ATTG-AAGAAAAAATGTATTT--TATA-TAATATACAA-TGTAAACCAG-CCTCATA--TGTCAAATTTCAA------C-CATTAATTAAAT-GATGTCAGA-A-TTAAAACTTTTCACACCAGATGGTA-TTT--TTTCCTTGA-CTGTAATTTTTGGGTAAAAAATTATT---TTTTTT---AATGAAA--TTG----TTA-AAa
gi|11                         :                        actaGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-GT-AATT-GC--AACAGAAATTATTT---ATTGATTATTCAT--GCAA----GAAAA-T--ATA------------A-TA--A--AAAAT-CGGCTGCTGT--AT-C-TCGATGGGAAAATGGG-AATTTTGGGGTTAA-ATG-ATGG-TTTTT-TT--AATATAAAA---ATCGCCAAAAACTGG-AAATTG----AAGAA-------AAAAT-----ATAATTCA--TGTACCC
gi|12                         :                                                                taCCAG-CAT-CAAA-CG-AATT-GC--ATTAGAAATGAATT---ATTGATTATTCAT--GCAA----GATAA-C--ATA-T------------TA----AAAAAT-AGGTTGTTAT--AT-C-TTAATGGAAAGA--------TTTG----CAACATG-AT---------------------A---ATTACCCCAAACTGG-AAACTG----AAGAA-------
gi|13                         :                                                                                                                                                                                                                                                                                                           atctagtcaaaGTAACCTACAAT-G--AAAACCAGT-C--GCAAATTGT--A-A--TTTCAGTC-TTT----AA-A-TAATCA-A--C-------ATAATAAAAACCG-G-CTGCTGT-ATCTCG-ATGGAAAAATGGAAATGTTGGAGTTAAA-TGAT-GTTTTTTTTTAAATAT-AAAA
gi|14                         :                            GTCACT-CA---A-G-CTAC--AT-TG-T--TC-GTGCAAAA-CCT-CAAA-CT-TAAT-GT--AACAAAAACGAAAT---ATTGAATATTCAT--ACAA----GACAA-T--ATA-TAG-AAA------------GAAAGT----TTGTTAT--AT-C-TCAATGGGAA
gi|15                         :                         gtcaaCAATGCT---AAG-C--C--AT-TT-T--T--GGGCCTCA-CTTTCAAG-CT-AATT-GC--AAAAGAAATTAAT----ATTTATTATT-----------------------TA-TAC-AAACAACA-TA--A-AAAATT-CGGCTGCTGT--AT-
gi|16                         :                            GTCAAG-CC---A-G-C--CTTAT-TG-T--TC-GTACAAAA-CCT-CAAA-CG------GC--AACAGTAACGCAAT---ATTGATTATTCAT--TCAA----GATAA-C--ATA-TTC-CAAAAAGA-T
gi|17                         :                        tctaGTCAAT-CT---A-G-C--C--ATATTGT--TT-GTGCTTAAACCT-CAA---C-AATT-GA--AACA-AAATAAAT----ATTGGTTATTCAT--GCA------GAAA-T--ATg
gi|18                         :                                                                                                                                                                                                                                                                                                                                                        aTTTTAA-A--TTTTAATTATGT----AA-A-TGATCA-A--C-------ACAA-TAAAAACG-G-CTGCTGTAATCTCG-ATGGGAAAGTGGGAATttgttatatccaatgta
gi|2                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                aGAAGCAGAAAACTATAACT-ATGTAACATACAAATGAAACCA-GTC-TCAAATTTT--AATTTCAATCT----------ACAAT--TAAAGATCGGCTCTTGTTTCTTGGTGGGAA-AAGGGAATTTTCT--GTTAAATGGTGTTTTTCTACTCAATAAAAATCGCC-AAAA--CGGAA-A-TGAAGAAAA----T---AATT--GT--TAAC--TACAAATGAAA--A---CAAGCCTCATATTTT--AAATTTCAACCTTTTAAATGAAAAA-CATAATAAAAAATCGGCTGAATTCATCTTCGATGGAAA-AGAAGGAATTTTTTGG-TTAAAATGGTGTTTTCTTAAAAAATTCAAAAATGGCCAAAAAA-CTGGAAAGATTGAAAGAGAAAATATAAGTCACATGTTATTATACAA-TAAAA--TAGT-CTCATAATTTTTCAATTCTAATTATATT-C-TA--TTATAT-AA--TC--ACACTTAATG-TTTTAAAACCAGACAGAA-TTTCG-TTCCTGGG-T-GTAATTTTTTTG--GGGGGGTCTTG--CTTTTTAAAAATAAAA-GTTG----TTGAAAAACCTAAGAAAAAGGCTCCACAATCTTTTAAA---T--ACATCTAA---CCCCCCCAtg
gi|3                          : tcgctcaaagagaaattagagacacgataaAAT-CTGGTA-G-C--C--AT-TT-T--TTTGGGCTTAA-CTT-CAAA-CT-TATT-GG--AACAAAAATGATTT---ATTGATTTCTAAT--GCAA----GAAAA-T--ATA-TAT-AAACAACA-TA--AAAGAAAT-CAACTGGCGT--AT-G-TTGATGGGAAAATAGG-AATTTT-GGGTTAA-ATG-AT-GTTTTTT-TT--AATATAAAT---ATCGGCATATACTGG-AATTTC----AAGAA-------AAACT-----ATAATTCA--AGTACCCTACAAT-G--AAAAACATT-C--TCAAATTGT-AA-A--TTTCAACT-TTTTTAAAA-A-CAATTA-G--C-------ATAA-AGAAATCG-G-CTCCTGT-ATATCG-ATGGGAAAATTGGAATTTTTGGGTAAAA-TCAT-G--TTTTT---AATAT-GAAAATTGCC-CAAAATT-GAA-AATTG-AAG-AAA--AATATTATTTA-TGTATCCTACAGTGAAAA-CCAGTC--TC-AACTTTTAAATATCAGCCTTTTAATGATCAACATATTAAAAATCGG-CTGTTGTTTCC---------GAATG-----TTTGGATTAAATGGTTGTTTTTTTTTCAA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                gtATCGCC-AAAAACTGGAA-ATTGAAGAGAAAATTT---AATCTG--TGTAATCT-AC-AAT---A--AAAACAAGCCTCATGTTTT--AAATTTCAACC-TTTAAATGATAAA-CACAAT-AAAGATCGACTG-ATTTTTC-TCGATGGGAAGAAGGGGA--TTTGGGGGTT-AAGTTATGTTTTTTT----CATATCAAAATCGCCAAAAAAACTGGAG--ATTG-AAGAGAAAATATAATT--CATG-TATTCTAC----------CAGTC-TCATA--TTTTAAATTTCAA------CAT-T---TTAAATTGA--TT--A-A-TT---G-TTCTTAAACCAG-TATAA-TTTCGTT-CCTGGGAC-GTAATTGGGGGG--GGGGGTTCTT---TTATTT---AATAAAGTGTTAGAATTTG-AAATTTTAAGAAAAA-ACTCCACGATTTTTGTAATACTGTACATCTAAGACCACCCCCACCCCCAACAACAAAAATAAATCGAGGTTATGATATAAGTACCGCGTACGTGTGTTTGTGTGTGTGTGTGTGAAAATAACATCTGAGGTCGAAAAAg
gi|5                          :                            GTCAAT-CT---A-GGC--C--AT-TT-TGTTT-GGTCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCATTAGCAA----GAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAATCCGGCTGCGGT--AT-C-TCGATGGG-AAATGGG-AATTTTAGGGTTAA-ATGTAT-G-TTTTT-TTA-AATATGAAA---ATAGCC-AAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAAT-GACAAAACCAAT-G--TC-AATTTTCAA-ATTTTTCAACC-TTT----AA-ACCGATTGTG--C-------ATAA-AAAAATCG-G-CTG-TGT-ATCTCGAATGGGAAAATGGAAATATTGGGATAAAATTGAC-G--GTTTTTAAAATACAAAAAATCGCCGCAAAATTGGGA-AATTGTAATAAAAAGAATATAATTTA-TGTAACCTACAATGAAAAGGCAGTC--TCAAA-TTTTAAA--------TTTCAA--CTTTA
gi|6                          :                          taGTCAAT-CT---A-G-C--C--AT-TT-T--TT-GGGCCTAA-CCT-CAAA-CT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT--GCAA----GAAAA-T--ATA-TAC-AAACAGCA-TA--ATAAAAAT-CGGCTGCGGT--AT-C-TCGATGGGAAAATGGG-AATTTTAGGGTTAA-ATG-AT-G-TTTTT-TTTAAATATGAAA---ATAGCCAAAAGCTGG-AAATTG----AAGAA-------AAAAT-----ATAATTAA--TGTACCCAACAAT-G--AAAACCAAT-G--TC-AATTTTCAA-A--TTTCAACC-TTT----AA-A-CGATTG-G--C-------ATAA-AAAAATCG-G-CTGCTGT-ATCTCG-ATGGGAAAATGGAAATATTGGGATAAAA-TGACGG--TTTTTTAAAATAC-AAAAATCGCC-CAAAATT-GGA-AATT
gi|7                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T---GACATAA-CCT-CAAAACT-AATT-GC--AACAGAAATGATTT---ATTGATTATTCAT--GCGA----GAAAA-TACATA-TAC-AAACAACA-TA--ATAAAAAT-CGGCTA-TGT--AT-C-TCGATGGGAAAATTGG-AATTTTGGGGTT-T-ATG-AT-G-GTTTT-GT---ATATAAAA---AATGCCCAAAACTGG-AAATTGAA--AAAAA-------AAAAT-----GTAATTTA--TGTATCCTACAAT-G--AAAATCAAT-CTGTTAAATTTTAAATG--TTTCAGTC-TTT----AAGA-TGA-CA-A--CACCATAAATAA-AAAAAACA-GTCTGCTGT-AT
gi|8                          :                          taGTCAAT-CT---A-G-C--C--AT-AT-T--T----GACAAA-CCT-CAAA-CA-CATT-GC--A-CAGAAATGATTTTATATTGATTATTCAT--GCGATCGAGAAAACT--ATAATACCAAACAACAATATTATAATAAT-CGGCTACTGTTAATTC-TCGATGGGAAAATTGGAA-TTTTGGGGTTTA--TG-AT-G-GTTTTGTT--AATG-AAAA---ATCGCCAAAAACTGG-AAATTGTGAAAAAAA-------AAAAT-----GTAATTTATCTGTATCCTACAAT-GA-AAAATCAAT-C--TTAAATTCTTAA-AT-TTTCAGTC-TTT----AA-A-TGATCA-ACTC-------ATAA-AAAAA
gi|9                          :                             TCAAT-CT---A-G-C--C--AT-AT-T--TT-AGGCAACA-CCT-CAAA-CT-AATT-GC--AACAGA--------------GATTATTCAT--GCAA----GAAA-------------------CA-GT--ATAAAAAT-CGGCTGCTGC--AT-C-TCGATGG---------AAATT-----------AT--AT-A-T----------ATATAAAATAAATCGCCCCAAACTGA-AAA--A----AAAAACACCCCAAAAACCAGAAATGATTTA--TGTAACCTACAAT-A--AAAACCAGT-C--TCATATTTTTAA-A--TTTTAACC-TTC----AA-------------C-------ATAA-AAAAAa