lowQualScore : 1 222 1 44444444 1 4444444444 1 4444444444444 1 22222222 5555 1 222222 1 1 1 11 11 555555555555555555 33333333333333 1 222222222222222222222222 444444444444444444444444 1 3333333 2 2222222
lowQualScore : 4 7 2 666 4 5 6 8 33333333 2 5 3 4444444444 5 7777777777777 6 5 00000000 0 1111 4 6 6 5 6 444444 5 6 7 5 00 11 000000000000000000 22222222222222 3 0 999999999999999999999999 4 77 66 4 66 66 111111111111111111111111 444 999999 2 6666666 4 4444444 4
lowQualScore : . . . ... . . . . ........ . . . .......... . ............. . . ........ . .... . . . . . ...... . . . . .. .. .................. .............. . . ........................ . .. .. . .. .. ........................ ... ...... . ....... . ....... .
lowQualScore : 0 0 5 000 0 5 0 3 77777777 5 0 0 3333333333 0 3333333333333 7 0 33333333 7 5555 0 0 0 0 0 000000 0 0 0 0 00 00 555555555555555555 00000000000000 6 1 777777777777777777777777 4 00 11 4 11 11 111111111111111111111111 222 666666 6 6666666 0 1111111 0
consensus : AAATNCGCGAAAAGATCCGNANCNAANACATTCAGTAATGGTACGATTTAGAAACACAA----GA--TCGATANTCAAGGCCGAAACGAAGCAACNTCAGT-A-AC-TTGAAG-ACTGTTTTAGAAG--T-TAAGA----GTGAAAGAATCCGGAACA--ATAC--AATAACGGTACGATTTGAAAACA-CCNAGGTTTAAATCAAGGCAAGCCAACCAAAAATTACGTACGAAACAACAAAGATGTCGGCACAAAAACTGTGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATAAATAATTATACAAGACAGCNCTAAAATCC-AACAACACCCG-------A--TACCTAGNAGTGTC-GGATCNACATAG-TAGATACGAGGTCA-----A--AN--------------A-TG-ACCA--ACGA-CACG--AA--CAA---TA---AGATAAATCCT--AAGGACGACCCGT-C----CCTTCTTCAGGACAA-AC----GAAAA-GGTTTA-CAGTNAAGATAGNGGGGCGGG
Reference ( gi|1 ) : AAATACGCGAAAAGTTCCAGAA-AAAAACATTCAGTAATGGTACAATATAGAAACACAA----AA--TCGATACTAAAGGCCGAAACGAAGTAACATCAGTTAAACGTTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGCAACAATCTGGAACA--ACAT--AATAACGGTACAATTTGAAAATATCCTAGATTTAAATTAAGGCGATCCAACCAAAAATTATGTACGAAACAACAAAGATGCAGACTCAAAAACTTTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATAATACAAAACAGTACTAAAATCT-AACAACACCCG-------A--TTTCTATAAGTGTC-G-ATCTACATA--TAGATACAAGGTCA-----A--AT--------------A-TG-GCCA--ACGA-CACG--AA--CAA---TA---AAATAAATCCT--AACGACGGCCCGT-C----CCTTCTTCAGTACAATAG----GAAAATGGTTTACCAGTTAAGATAAAGGGGCGGG
gi|6 : AAATTCGTGAAAAGATCCGGAC-CAATACATTCAATAATGGTACGATTTAGAAACACTA----GA--TCG
gi|5 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaactgttttaaaagacaaAATACGCGAAAAGATCCATAACAAAAACAT-CAGTAATGGCACGATTTAAAAACACAAGGTCAAGGTCGATAGTCAAGGTCAAAACAAAGTAACAC-----------TGTAG---TGTGTTAGAAGACT-TACG------TGAAAGAATCTGGAACA--ATAC--AATGATGGTACAATTTGAAA
gi|14 : aattagtTATGATATAGAAACAAAA----GG--TAGATACTCAAGACCGAAACGAAGCAACCTTAATTACACTTTGAAGAACTGTTTTAGAAG--TGTAA
gi|2 : gcTCAGT-AAATGTTGAAGCACTGTTTTAGAAG--T-TA-GA----GTACAAGAATCTGGAACA--ATAC--AGTAACGGTACAATTTGAAAAC--CCAAGGTTTAAATCAAGGCAAGCCAACCAAAAATTACGTACGAAACAACAAAGATGTCGGCACAAAAACTGTGAGAG
gi|6 : ccACTGTTTTAAAAG--A-CAAAAATTCGTGAAAAGATCCGGACCAATACATTCAATAATGGTACGATTTAGAAACA--CTAGATtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaggataaataattatacaaaacagctctaaaatccaacaacacccgatacctaacagtgtctacatatagatacaagtcaaatatggccaacgacatgaacaataagataaatcctgacgacggcccgtcccttcctcaggacaacagaacaaagttttag
gi|2 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaGGATAAATAATTATACAAAACAGCTCTAAAATCC-AACAACACCCG-------A--TACCTAACAGTGTC------TACATA--TAGATACAAG-TCA-----A--AT--------------A-TG-GCCA--ACGA-CATG--AA--CAA---TA---AGATAAATCCT--GACGACGGCCCGT-C----CCTTCCTCAGGACAACAG----AACAAAGTTTTAcg
gi|3 : cctcagtaaatgttgaagcactgttttagaagttagagtacaagaatctggaacaatacagtaacggtacaatttgaaaacccaaggtttaaatcaaggcaagccaaccaaaaattacgtacgaaacaacaaagatgtcggcacaaaaactgtgagagtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaTATAAGA-AGCACCAAAAATC-AACAACACTCA-------AACATTC-A-AAGTGTCGG-ATCGA-ATAG-TAGGTACTAAGTCA-----A--ATGAAAAATACTTAAAA-TG-ACCA--TCGA-CACGCAAA--CAA---T-------T---TGTT--TGGGATGACTTGT-C----CCTTCTTCAGGACGATAGAAATGAAAATGg
gi|8 : CTAAAACCC-AAATACACCCGTGCGGAAA--AGCCTAGACGTGTC-GGATTCATGTAC-TGGCTACAAGGTCA-----AGAAT--------------AATGTGTCACCATGAACACG--AA--CAA---TT---AAATAGATCAA--AAAGACGA--CGT-C----CCTTCTT-AGTcaataaaaatgcagactaacactataactaaactacaaacgaaacgtcttgcatatacattgaaattctctagtgtaatatgaggtagtagaaat
gi|4 : AAAGTTTCAACAACACACG-------A--TACCCATCAGTGTC-GGATCCACAAAGCTA-ATACAAGATCAGAAGAA--AA--------------A-TG-ACCA--ACGA-CACG--AA--CAA---T-----------TTC-----GGACGACCCGTGCAGTGCCTTCATCAGGACAA-AC----GTAAA-GGTTTA
gi|10 : aaAATTCC-AACAACACCTG-------G--TACCTAGTAGTGTT-GGATCTACATG--TAGATACAAGCACT-----A--AA--------------G-TG-ACCA--ATGG-CACA--AA--TAAAATTT---AGATAAATCCtatgtgatacatgtagctaaagatatatacggaatactacaacttgtaaacgaacttgagtgtacactgtaaagcacatg
gi|20 : AAGTGTC-GGATCGA-ATGG-TAGATACGAGGTCA-----A--AT--------------A-c
gi|15 : actcaacatccaA--TAG-TGCGAG--TA-----A--AA--------------A-TG-ACCA--ACGA-CACG--AAGCCAA---CAACTAGATAAATTCT--AAGTACTACTTGC-C----CCTTCCTCAGaataagga
gi|9 : -----A--AC--------------A-TG-ACCA--ACGA-CACG--AA--CAA---TA---AGA-----CCT--------GG-CCGT-T----TCTTTTTCATGACAA-AC----GAAAA-GGTTT-CCAaa
gi|18 : t--AC--------------A-TG-ACCA--ACGA-CACG--AA--CAA---TA---AGA-----CCT---------GCGCGT------TCTTTTTCATGACAA-AC----GAAAA--GTTTtacatttaaaaaccataaacattacgaaaagtaattaaacctataa
gi|12 : A--ACGA-CACG--AA--CAA---TG---AAAGAAATCAT--AAGTACGGCCCGT-C----CCTTTCTCAGGACAACA------AAAA-GTTTTAGCAGTAAAAATAATGGGGCGGG
gi|13 : ATAATTCCTGGAACGAC---TCGT-C----CCTTTCTTAGGATAAACG----GAAAAAAGTTTc
gi|11 : agtaagtgtcattaacgaaaactgacaattgcgGACGACTAGT-G----CCCTCTTCAGGAAAA-AC----GAAAA-GGTTTA-TA--TAAGATAGAtaatc
gi|16 : aaaattACGATCTGT-C----CCTTCTTCAGGACGATAGGAT-GAAAATGtaaagataaatatggacaaatcaactaaactaaattg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TGCCCCTTCTTATTTGCATTGAAATGAATACGAAATAAAAATATGAACATACGTCATCACTAAGTAATTAAAACCCGATAACAAATAACACCTGTACATGTACATATTGAAATTCTCGAGTGCAAAATGGGGTAATAGAA
Unaligned ( gi|17 ): TAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGTCCCTTCTTCAGGACG
Unaligned ( gi|19 ): TTTCAATAGATCCTAGGGACGACCCGTCTCTTTCTCAGGATAAATGAAAAAAGTTTTGA
Alignments
lowQualScore : 222 222222 333333333333333333333333 1111 22222 2222 22 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 1111111 33333333333333 1111111 111111111111 11 1111 1
lowQualScore : 1 11 111 1 7 4 888888 1 0 333333333333333333333333 5555 5 44444 3 0 2 1111 2 00 1 2 2 4 2 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 4 0 6 1 99 8888888 3 5 99 4 1 6 88 2 3 7 77777777777777 1 4444444 3 55 55 666 555555555555 11 0 2 6666 88888 1111 88 3 3 3 99 1 11
lowQualScore : . .. ... . . . ...... . . ........................ .... . ..... . . . .... . .. . . . . . .............................................................................................. . . . . .. ....... . . .. . . . .. . . . .............. . ....... . .. .. ... ............ .. . . .... ..... .... .. . . . .. . ..
lowQualScore : 0 77 777 0 3 0 888888 0 7 777777777777777777777777 2222 6 55555 0 2 0 2222 0 77 0 5 5 0 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 7 7 0 22 6666666 9 7 99 3 0 6 00 0 1 6 22222222222222 0 4444444 6 00 00 444 777777777777 11 1 9 1111 33333 4444 66 6 6 3 99 0 77
consensus : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AAC---T--TGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATACA----ATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
Reference ( family-2009 ) : AAATNCGCGAAAAGATCCGNANCNAANACATTCAGTAATGGTACGATTTAGAAACACAAGATC------GATANTCAAGGCCGAAACGAAGCAACNTCAGT--AAC---T--TGAAG-ACTGTTTTAGAAG--T-TAAGA----GTGAAAGAATCCGGAACAATACA----ATAACGGTACGATTTGAAAACA-CCNAGGTTTAAATCAAGGCAAGCCAACCAAAAATTACGTACGAAACAACAAAGATGTCGGCACAAAAACTGTGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATAAATAATTATACAAGACAGCNCTAAAA--TCCAACAACACCCG-------ATAC-CTAGNAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAGNGGGGCGGG
gi|1 : AAATACGCGAAAAGTTCCAGAA-AAAAACATTCAGTAATGGTACAATATAGAAACACAAAATC------GATACTAAAGGCCGAAACGAAGTAACATCAGTTAAACG--T--TGAAGCACTGTTTTAGAAG--T-TAAGA----GTGCAACAATCTGGAACAACATA----ATAACGGTACAATTTGAAAATATCCTAGATTTAAATTAAGGCGATCCAACCAAAAATTATGTACGAAACAACAAAGATGCAGACTCAAAAACTTTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATAATACAAAACAGTACTAAAA--TCTAACAACACCCG-------ATTT-CTATAAGTGTC-GATCTACATA-TAGATACAAGGTCA--------------AATATG-------GCCAACGACA-CG--AA--CAA---T-AA---AATAAATCCTAACGACGGCCCGT-C----CCTTCTTCAGTAC-----AAT---AGG--AA-AATGGTTTACCA-GTTAAGATAAAGGGGCGGG
gi|10 : AAT--TCCAACAACACCTG-------GTAC-CTAGTAGTGTTGGATCTACAT-GTAGATACAAGCACT--------------AAAGTG-------ACCAATGGCA-CA--AA--TAAAATT-TA---GATAAATCC
gi|11 : GACGACTAGT-G----CCCTCTTCAGGAA-----AA----ACG--AA-AA-GGTTTA-TA---TAAGATAGc
gi|12 : aaaattAACGACA-CG--AA--CAA---T-GA---AAGAAATCATAAGTACGGCCCGT-C----CCTTTCTCAGGAC------A----ACA--AA-AA-GTTTTAGCA-GTAAAAATAATGGGGCGGGataaagataaatatggacaaatcaactaaactaaattg
gi|13 : AACGAAAACT--GA--CAA---TTGC---GATAATTCCTG-GAACGACTCGT-C----CCTTTCTTAGGAT-----AA----ACGGAAA-AA-AGTTTc
gi|14 : agtaagtgtcattTATGATATAGAAACAAAAGGTA------GATACTCAAGACCGAAACGAAGCAACCTTAAT--TACACTT--TGAAGAACTGTTTTAGAAG--TGTAAtaatc
gi|15 : gcTAG-TGCGAG--TA--------------AAAATG-------ACCAACGACA-CG--AAGCCAA---C-AACTAGATAAATTCTAAGTACTACTTGC-C----CCTTCCTCAGAA
gi|16 : aGAACGATCTGT-C----CCTTCTTCAGGAC-----GATAGGATG--AA-AA-
gi|17 : CCGT-C----CCTTCTTCAGGAC-----tgaaataaaattgcaaactaacactacaactaaactac
gi|18 : taannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCTG----CG---CGT-T----CTTT-TTCATGAC-----AA----ACG--AA-AA-GTTTg
gi|19 : ATAGATCCTAGGGACGACCCGT-C----TCTTTCTCAGGAT-----AA----ATGA-AA-AA-AGTTT
gi|2 : tttcaCCTCAGT--AAA---TGTTGAAGCACTGTTTTAGAAG--T-TA-GA----GTACAAGAATCTGGAACAATACA----GTAACGGTACAATTTGAAAAC--CCAAGGTTTAAATCAAGGCAAGCCAACCAAAAATTACGTACGAAACAACAAAGATGTCGGCACAAAAACTGTGAGAGtga
gi|2 : GGATAAATAATTATACAAAACAGCTCTAAAA--TCCAACAACACCCG-------ATAC-CTAACAGTGTC-----TACATA-TAGATACAAG-TCA--------------AATATG-------GCCAACGACA-TG--AA--CAA---T-AA---GATAAATCCTGACGACGGCCCGT-C----CCTTCCTCAGGAC-----AA----CAG--AACAA-AGTTTtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaggataaataattatacaaaacagctctaaaatccaacaacacccgatacctaacagtgtctacatatagatacaagtcaaatatggccaacgacatgaacaataagataaatcctgacgacggcccgtcccttcctcaggacaacagaacaaagttttag
gi|20 : cctcagtaaatgttgaagcactgttttagaagttagagtacaagaatctggaacaatacagtaacggtacaatttgaaaacccaaggtttaaatcaaggcaagccaaccaaaaattacgtacgaaacaacaaagatgtcggcacaaaaactgtgagagtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaACTCA-------ACAT-CCA-AAGTGTCGGATCGA-ATGGTAGATACGAGGTCA--------------AATAtag
gi|3 : TATAAGA-AGCACCAAAA--ATCAACAACACTCA-------A-ACATTCAAAGTGTCGGATCGA-ATAGTAGGTACTAAGTCAAATGAAAAATACTTAAAATG-------ACCATCGACA-CGCAAA--CAA---T--------T---TGTTTGGGATGACTTGT-C----CCTTCTTCAGGACGATAGAA----ATG--AA-AA-----TG-CA-ATAAAAATaataagga
gi|4 : AAAAGTTTCAACAACACACG-------ATAC-CCATCAGTGTCGGATCCACAAAGCTAATACAAGATCAGAAGA---------AAAATG-------ACCAACGACA-CG--AA--CAA---T------------TTC---GGACGACCCGTGCAGTGCCTTCATCAGGAC-----AA----ACG--TA-AA-GGTTTA-TATGTGAgcagactaacactataactaaactacaaacgaaacgtcttgcatatacattgaaattctctagtgtaatatgaggtagtagaaat
gi|5 : aAATACGCGAAAAGATCCATAACAAAAACAT-CAGTAATGGCACGATTTAAAAACACAAGGTCAAGGTCGATAGTCAAGGTCAAAACAAAGTAAC---------AC---T---GTAG---TGTGTTAGAAGACT-TACG------TGAAAGAATCTGGAACAATACA----ATGATGGTACAATTTGAAAtacatgtagctaaagatatatacggaatactacaacttgtaaacgaacttgagtgtacactgtaaagcacatg
gi|6 : aattagtC---T--TGGTA-ACTGTTTTAAAAG--A-CAAAAATTCGTGAAAAGATCCGGACCAATACATTCAATAATGGTACGATTTAGAAACA-C
gi|6 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgAAATTCGTGAAAAGATCCGGACC-AATACATTCAATAATGGTACGATTTAGAAACACTAGATC------Gtagatcg
gi|8 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaactgttttaaaagacaaCTAAAA--CCCAAATACACCCGTGCGGAAAAGC-CTAGACGTGTCGGATTCATGTACTGGCTACAAGGTCA--------------AGAATAATGTGTCACCATGAACA-CG--AA--CAA---T-TA---AATAGATCAAAAAGACGA--CGT-C----CCTTCTT
gi|9 : --------------AACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCT--GG-----CCGT-T----TCTTTTTCATGAC-----AA----ACG--AA-AA-GGTTTC-CA-agt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCCCCTTCTTATTTGCATTGAAATGAATACGAAATAAAAATATGAACATACGTCATCACTAAGTAATTAAAACCCGATAACAAATAACACCTGTACATGTACATATTGAAATTCTCGAGTGCAAAATGGGGTAATAGAA
Alignments
lowQualScore : 222222 444444444444444444 1111 22222 2222 22 777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 33333333333333 1111111 111111111111 11 1111 1
lowQualScore : 0 6 7 7 1 888888 000000000000000000 0 5555 5 44444 1 0 1111 00 1 1 1 1 1 888888888888888888888888888888888888888888888888888888888888888888888888888888 1 6 99 8888888 3 5 88 4 1 6 88 2 3 7 77777777777777 1 4444444 3 55 55 666 555555555555 11 0 2 6666 88888 1111 88 3 3 3 99 1 1
lowQualScore : . . . . . ...... .................. . .... . ..... . . .... .. . . . . . .............................................................................. . . .. ....... . . .. . . . .. . . . .............. . ....... . .. .. ... ............ .. . . .... ..... .... .. . . . .. . .
lowQualScore : 7 7 3 3 0 888888 222222222222222222 2 2222 6 55555 0 2 2222 77 0 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 0 7 22 6666666 9 7 11 3 0 6 00 0 1 6 22222222222222 0 4444444 6 00 00 444 777777777777 11 1 9 1111 33333 4444 66 6 6 3 99 0 0
consensus : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AACG--T--TGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
Reference ( family-2009 ) : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AAC---T--TGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
gi|1 : AAATACGCGAAAAGTTCCAGAA-AAAAACATTCAGTAATGGTACAATATAGAAACACAAAATC------GATACTAAAGGCCGAAACGAAGTAACATCAGTTAAACG--T--TGAAGCACTGTTTTAGAAG--T-TAAGA----GTGCAACAATCTGGAACAACA----TAATAACGGTACAATTTGAAAATATCCTAGATTTAAATTAAGGCGATCCAACCAAAAATTATGTACGAAACAACAAAGATGCAGACTCAAAAACTTTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATAATACAAAACAGTACTAAAA--TCTAACAACACCCG-------ATTT-CTATAAGTGTC-GATCTACATA-TAGATACAAGGTCA--------------AATATG-------GCCAACGACA-CG--AA--CAA---T-AA---AATAAATCCTAACGACGGCCCGT-C----CCTTCTTCAGTAC-----AAT---AGG--AA-AATGGTTTACCA-GTTAAGATAAAGGGGCGGG
gi|10 : AAT--TCCAACAACACCTG-------GTAC-CTAGTAGTGTTGGATCTACAT-GTAGATACAAGCACT--------------AAAGTG-------ACCAATGGCA-CA--AA--TAAAATT-TA---GATAAATCC
gi|11 : GACGACTAGT-G----CCCTCTTCAGGAA-----AA----ACG--AA-AA-GGTTTA-TA---TAAGATAc
gi|12 : aaaattAACGACA-CG--AA--CAA---T-GA---AAGAAATCATAAGTACGGCCCGT-C----CCTTTCTCAGGAC------A----ACA--AA-AA-GTTTTAGCA-GTAAAAATAATGGGGCGGGgataaagataaatatggacaaatcaactaaactaaattg
gi|13 : AACGAAAACT--GA--CAA---TTGC---GATAATTCCTG-GAACGACTCGT-C----CCTTTCTTAGGAT-----AA----ACGGAAA-AA-AGTTTc
gi|14 : agtaagtgtcattTATGATATAGAAACAAAAGGTA------GATACTCAAGACCGAAACGAAGCAACCTTAAT--TACACTT--TGAAGAACTGTTTTAGAAG--TGTAAtaatc
gi|15 : gcTAG-TGCGAG--TA--------------AAAATG-------ACCAACGACA-CG--AAGCCAA---C-AACTAGATAAATTCTAAGTACTACTTGC-C----CCTTCCTCAGAA
gi|16 : aGAACGATCTGT-C----CCTTCTTCAGGAC-----GATAGGATG--AA-AA-
gi|17 : CCGT-C----CCTTCTTCAGGAC-----tgaaataaaattgcaaactaacactacaactaaactac
gi|18 : taannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCTG----CG---CGT-T----CTTT-TTCATGAC-----AA----ACG--AA-AA-GTTTg
gi|19 : ATAGATCCTAGGGACGACCCGT-C----TCTTTCTCAGGAT-----AA----ATGA-AA-AA-AGTTT
gi|2 : tttcaCCTCAGT--AAA---TGTTGAAGCACTGTTTTAGAAG--T-TA-GA----GTACAAGAATCTGGAACAATA----CAGTAACGGTACAATTTGAAAAC--CCAAGGTTTAAATCAAGGCAAGCCAACCAAAAATTACGTACGAAACAACAAAGATGTCGGCACAAAAACTGTGAGAGtga
gi|2 : GGATAAATAATTATACAAAACAGCTCTAAAA--TCCAACAACACCCG-------ATAC-CTAACAGTGTC-----TACATA-TAGATACAAG-TCA--------------AATATG-------GCCAACGACA-TG--AA--CAA---T-AA---GATAAATCCTGACGACGGCCCGT-C----CCTTCCTCAGGAC-----AA----CAG--AACAA-AGTTTtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaggataaataattatacaaaacagctctaaaatccaacaacacccgatacctaacagtgtctacatatagatacaagtcaaatatggccaacgacatgaacaataagataaatcctgacgacggcccgtcccttcctcaggacaacagaacaaagttttag
gi|20 : cctcagtaaatgttgaagcactgttttagaagttagagtacaagaatctggaacaatacagtaacggtacaatttgaaaacccaaggtttaaatcaaggcaagccaaccaaaaattacgtacgaaacaacaaagatgtcggcacaaaaactgtgagagtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaACTCA-------ACAT-CCA-AAGTGTCGGATCGA-ATGGTAGATACGAGGTCA--------------AATAtag
gi|3 : TATAAGA-AGCACCAAAA--ATCAACAACACTCA-------A-ACATTCAAAGTGTCGGATCGA-ATAGTAGGTACTAAGTCAAATGAAAAATACTTAAAATG-------ACCATCGACA-CGCAAA--CAA---T--------T---TGTTTGGGATGACTTGT-C----CCTTCTTCAGGACGATAGAA----ATG--AA-AA-----TG-CA-ATAAAAATaataagga
gi|4 : AAAAGTTTCAACAACACACG-------ATAC-CCATCAGTGTCGGATCCACAAAGCTAATACAAGATCAGAAGA---------AAAATG-------ACCAACGACA-CG--AA--CAA---T------------TTC---GGACGACCCGTGCAGTGCCTTCATCAGGAC-----AA----ACG--TA-AA-GGTTTA-TATGTGAgcagactaacactataactaaactacaaacgaaacgtcttgcatatacattgaaattctctagtgtaatatgaggtagtagaaat
gi|5 : aAATACGCGAAAAGATCCATAACAAAAACAT-CAGTAATGGCACGATTTAAAAACACAAGGTCAAGGTCGATAGTCAAGGTCAAAACAAAGTAAC---------AC---T------GTAGTGTGTTAGAAGACT-TACG------TGAAAGAATCTGGAACAATA----CAATGATGGTACAATTTGAAAtacatgtagctaaagatatatacggaatactacaacttgtaaacgaacttgagtgtacactgtaaagcacatg
gi|6 : aattagtACTGTTTTAAAAG--A-CAAAAATTCGTGAAAAGATCCGGACCAATACATTCAATAATGGTACGATTTAGAAACA-C
gi|6 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaAAATTCGTGAAAAGATCCGGACCAATA-CATTCAATAATGGTACGATTTAGAAACACTAGATC------Gtagatcg
gi|8 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaactgttttaaaagacaaCTAAAA--CCCAAATACACCCGTGCGGAAAAGC-CTAGACGTGTCGGATTCATGTACTGGCTACAAGGTCA--------------AGAATAATGTGTCACCATGAACA-CG--AA--CAA---T-TA---AATAGATCAAAAAGACGA--CGT-C----CCTTCTT
gi|9 : --------------AACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCT--GG-----CCGT-T----TCTTTTTCATGAC-----AA----ACG--AA-AA-GGTTTC-CA-agt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCCCCTTCTTATTTGCATTGAAATGAATACGAAATAAAAATATGAACATACGTCATCACTAAGTAATTAAAACCCGATAACAAATAACACCTGTACATGTACATATTGAAATTCTCGAGTGCAAAATGGGGTAATAGAA
Alignments
lowQualScore : 222222 333333333333333 1111 22222 2222 22 777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 33333333333333 1111111 111111111111 11 1111 1
lowQualScore : 0 6 7 7 1 888888 222222222222222 8 5555 5 44444 1 0 1111 00 1 1 1 1 1 888888888888888888888888888888888888888888888888888888888888888888888888888888 1 6 99 8888888 3 5 88 4 1 6 88 2 3 7 77777777777777 1 4444444 3 55 55 666 555555555555 11 0 2 6666 88888 1111 88 3 3 3 99 1 1
lowQualScore : . . . . . ...... ............... . .... . ..... . . .... .. . . . . . .............................................................................. . . .. ....... . . .. . . . .. . . . .............. . ....... . .. .. ... ............ .. . . .... ..... .... .. . . . .. . .
lowQualScore : 7 7 3 3 0 888888 888888888888888 8 2222 6 55555 0 2 2222 77 0 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 0 7 22 6666666 9 7 11 3 0 6 00 0 1 6 22222222222222 0 4444444 6 00 00 444 777777777777 11 1 9 1111 33333 4444 66 6 6 3 99 0 0
consensus : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
Reference ( family-2009 ) : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
gi|1 : AAATACGCGAAAAGTTCCAGAA-AAAAACATTCAGTAATGGTACAATATAGAAACACAAAATC------GATACTAAAGGCCGAAACGAAGTAACATCAGTTAAA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGCAACAATCTGGAACAACA----TAATAACGGTACAATTTGAAAATATCCTAGATTTAAATTAAGGCGATCCAACCAAAAATTATGTACGAAACAACAAAGATGCAGACTCAAAAACTTTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATAATACAAAACAGTACTAAAA--TCTAACAACACCCG-------ATTT-CTATAAGTGTC-GATCTACATA-TAGATACAAGGTCA--------------AATATG-------GCCAACGACA-CG--AA--CAA---T-AA---AATAAATCCTAACGACGGCCCGT-C----CCTTCTTCAGTAC-----AAT---AGG--AA-AATGGTTTACCA-GTTAAGATAAAGGGGCGGG
gi|10 : AAT--TCCAACAACACCTG-------GTAC-CTAGTAGTGTTGGATCTACAT-GTAGATACAAGCACT--------------AAAGTG-------ACCAATGGCA-CA--AA--TAAAATT-TA---GATAAATCC
gi|11 : GACGACTAGT-G----CCCTCTTCAGGAA-----AA----ACG--AA-AA-GGTTTA-TA---TAAGATAc
gi|12 : aaaattAACGACA-CG--AA--CAA---T-GA---AAGAAATCATAAGTACGGCCCGT-C----CCTTTCTCAGGAC------A----ACA--AA-AA-GTTTTAGCA-GTAAAAATAATGGGGCGGGgataaagataaatatggacaaatcaactaaactaaattg
gi|13 : AACGAAAACT--GA--CAA---TTGC---GATAATTCCTG-GAACGACTCGT-C----CCTTTCTTAGGAT-----AA----ACGGAAA-AA-AGTTTc
gi|14 : agtaagtgtcattTATGATATAGAAACAAAAGGTA------GATACTCAAGACCGAAACGAAGCAACCTTAAT--TA-CACTTTGAAGAACTGTTTTAGAAG--TGTAAtaatc
gi|15 : gcTAG-TGCGAG--TA--------------AAAATG-------ACCAACGACA-CG--AAGCCAA---C-AACTAGATAAATTCTAAGTACTACTTGC-C----CCTTCCTCAGAA
gi|16 : aGAACGATCTGT-C----CCTTCTTCAGGAC-----GATAGGATG--AA-AA-
gi|17 : CCGT-C----CCTTCTTCAGGAC-----tgaaataaaattgcaaactaacactacaactaaactac
gi|18 : taannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCTG----CG---CGT-T----CTTT-TTCATGAC-----AA----ACG--AA-AA-GTTTg
gi|19 : ATAGATCCTAGGGACGACCCGT-C----TCTTTCTCAGGAT-----AA----ATGA-AA-AA-AGTTT
gi|2 : tttcaCCTCAGT--AAATG--TTGAAGCACTGTTTTAGAAG--T-TA-GA----GTACAAGAATCTGGAACAATA----CAGTAACGGTACAATTTGAAAAC--CCAAGGTTTAAATCAAGGCAAGCCAACCAAAAATTACGTACGAAACAACAAAGATGTCGGCACAAAAACTGTGAGAGtga
gi|2 : GGATAAATAATTATACAAAACAGCTCTAAAA--TCCAACAACACCCG-------ATAC-CTAACAGTGTC-----TACATA-TAGATACAAG-TCA--------------AATATG-------GCCAACGACA-TG--AA--CAA---T-AA---GATAAATCCTGACGACGGCCCGT-C----CCTTCCTCAGGAC-----AA----CAG--AACAA-AGTTTtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaggataaataattatacaaaacagctctaaaatccaacaacacccgatacctaacagtgtctacatatagatacaagtcaaatatggccaacgacatgaacaataagataaatcctgacgacggcccgtcccttcctcaggacaacagaacaaagttttag
gi|20 : cctcagtaaatgttgaagcactgttttagaagttagagtacaagaatctggaacaatacagtaacggtacaatttgaaaacccaaggtttaaatcaaggcaagccaaccaaaaattacgtacgaaacaacaaagatgtcggcacaaaaactgtgagagtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaACTCA-------ACAT-CCA-AAGTGTCGGATCGA-ATGGTAGATACGAGGTCA--------------AATAtag
gi|3 : TATAAGA-AGCACCAAAA--ATCAACAACACTCA-------A-ACATTCAAAGTGTCGGATCGA-ATAGTAGGTACTAAGTCAAATGAAAAATACTTAAAATG-------ACCATCGACA-CGCAAA--CAA---T--------T---TGTTTGGGATGACTTGT-C----CCTTCTTCAGGACGATAGAA----ATG--AA-AA-----TG-CA-ATAAAAATaataagga
gi|4 : AAAAGTTTCAACAACACACG-------ATAC-CCATCAGTGTCGGATCCACAAAGCTAATACAAGATCAGAAGA---------AAAATG-------ACCAACGACA-CG--AA--CAA---T------------TTC---GGACGACCCGTGCAGTGCCTTCATCAGGAC-----AA----ACG--TA-AA-GGTTTA-TATGTGAgcagactaacactataactaaactacaaacgaaacgtcttgcatatacattgaaattctctagtgtaatatgaggtagtagaaat
gi|5 : aAATACGCGAAAAGATCCATAACAAAAACAT-CAGTAATGGCACGATTTAAAAACACAAGGTCAAGGTCGATAGTCAAGGTCAAAACAAAGTAAC---------A-C----TGTAG---TGTGTTAGAAGACT-TACG------TGAAAGAATCTGGAACAATA----CAATGATGGTACAATTTGAAAtacatgtagctaaagatatatacggaatactacaacttgtaaacgaacttgagtgtacactgtaaagcacatg
gi|6 : aattagtACTGTTTTAAAAG--A-CAAAAATTCGTGAAAAGATCCGGACCAATACATTCAATAATGGTACGATTTAGAAACA-C
gi|6 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaAAATTCGTGAAAAGATCCGGACCAATA-CATTCAATAATGGTACGATTTAGAAACACTAGATC------Gtagatcg
gi|8 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaactgttttaaaagacaaCTAAAA--CCCAAATACACCCGTGCGGAAAAGC-CTAGACGTGTCGGATTCATGTACTGGCTACAAGGTCA--------------AGAATAATGTGTCACCATGAACA-CG--AA--CAA---T-TA---AATAGATCAAAAAGACGA--CGT-C----CCTTCTT
gi|9 : --------------AACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCT--GG-----CCGT-T----TCTTTTTCATGAC-----AA----ACG--AA-AA-GGTTTC-CA-agt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCCCCTTCTTATTTGCATTGAAATGAATACGAAATAAAAATATGAACATACGTCATCACTAAGTAATTAAAACCCGATAACAAATAACACCTGTACATGTACATATTGAAATTCTCGAGTGCAAAATGGGGTAATAGAA
Alignments
lowQualScore : 222222 333333333333333 1111 22222 2222 22 777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 33333333333333 1111111 111111111111 11 1111 1
lowQualScore : 0 6 7 7 1 888888 222222222222222 8 5555 5 44444 1 0 1111 00 1 1 1 1 1 888888888888888888888888888888888888888888888888888888888888888888888888888888 1 6 99 8888888 3 5 88 4 1 6 88 2 3 7 77777777777777 1 4444444 3 55 55 666 555555555555 11 0 2 6666 88888 1111 88 3 3 3 99 1 1
lowQualScore : . . . . . ...... ............... . .... . ..... . . .... .. . . . . . .............................................................................. . . .. ....... . . .. . . . .. . . . .............. . ....... . .. .. ... ............ .. . . .... ..... .... .. . . . .. . .
lowQualScore : 7 7 3 3 0 888888 888888888888888 8 2222 6 55555 0 2 2222 77 0 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 0 7 22 6666666 9 7 11 3 0 6 00 0 1 6 22222222222222 0 4444444 6 00 00 444 777777777777 11 1 9 1111 33333 4444 66 6 6 3 99 0 0
consensus : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
Reference ( family-2009 ) : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
gi|1 : AAATACGCGAAAAGTTCCAGAA-AAAAACATTCAGTAATGGTACAATATAGAAACACAAAATC------GATACTAAAGGCCGAAACGAAGTAACATCAGTTAAA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGCAACAATCTGGAACAACA----TAATAACGGTACAATTTGAAAATATCCTAGATTTAAATTAAGGCGATCCAACCAAAAATTATGTACGAAACAACAAAGATGCAGACTCAAAAACTTTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATAATACAAAACAGTACTAAAA--TCTAACAACACCCG-------ATTT-CTATAAGTGTC-GATCTACATA-TAGATACAAGGTCA--------------AATATG-------GCCAACGACA-CG--AA--CAA---T-AA---AATAAATCCTAACGACGGCCCGT-C----CCTTCTTCAGTAC-----AAT---AGG--AA-AATGGTTTACCA-GTTAAGATAAAGGGGCGGG
gi|10 : AAT--TCCAACAACACCTG-------GTAC-CTAGTAGTGTTGGATCTACAT-GTAGATACAAGCACT--------------AAAGTG-------ACCAATGGCA-CA--AA--TAAAATT-TA---GATAAATCC
gi|11 : GACGACTAGT-G----CCCTCTTCAGGAA-----AA----ACG--AA-AA-GGTTTA-TA---TAAGATAc
gi|12 : aaaattAACGACA-CG--AA--CAA---T-GA---AAGAAATCATAAGTACGGCCCGT-C----CCTTTCTCAGGAC------A----ACA--AA-AA-GTTTTAGCA-GTAAAAATAATGGGGCGGGgataaagataaatatggacaaatcaactaaactaaattg
gi|13 : AACGAAAACT--GA--CAA---TTGC---GATAATTCCTG-GAACGACTCGT-C----CCTTTCTTAGGAT-----AA----ACGGAAA-AA-AGTTTc
gi|14 : agtaagtgtcattTATGATATAGAAACAAAAGGTA------GATACTCAAGACCGAAACGAAGCAACCTTAAT--TA-CACTTTGAAGAACTGTTTTAGAAG--TGTAAtaatc
gi|15 : gcTAG-TGCGAG--TA--------------AAAATG-------ACCAACGACA-CG--AAGCCAA---C-AACTAGATAAATTCTAAGTACTACTTGC-C----CCTTCCTCAGAA
gi|16 : aGAACGATCTGT-C----CCTTCTTCAGGAC-----GATAGGATG--AA-AA-
gi|17 : CCGT-C----CCTTCTTCAGGAC-----tgaaataaaattgcaaactaacactacaactaaactac
gi|18 : taannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCTG----CG---CGT-T----CTTT-TTCATGAC-----AA----ACG--AA-AA-GTTTg
gi|19 : ATAGATCCTAGGGACGACCCGT-C----TCTTTCTCAGGAT-----AA----ATGA-AA-AA-AGTTT
gi|2 : tttcaCCTCAGT--AAATG--TTGAAGCACTGTTTTAGAAG--T-TA-GA----GTACAAGAATCTGGAACAATA----CAGTAACGGTACAATTTGAAAAC--CCAAGGTTTAAATCAAGGCAAGCCAACCAAAAATTACGTACGAAACAACAAAGATGTCGGCACAAAAACTGTGAGAGtga
gi|2 : GGATAAATAATTATACAAAACAGCTCTAAAA--TCCAACAACACCCG-------ATAC-CTAACAGTGTC-----TACATA-TAGATACAAG-TCA--------------AATATG-------GCCAACGACA-TG--AA--CAA---T-AA---GATAAATCCTGACGACGGCCCGT-C----CCTTCCTCAGGAC-----AA----CAG--AACAA-AGTTTtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaggataaataattatacaaaacagctctaaaatccaacaacacccgatacctaacagtgtctacatatagatacaagtcaaatatggccaacgacatgaacaataagataaatcctgacgacggcccgtcccttcctcaggacaacagaacaaagttttag
gi|20 : cctcagtaaatgttgaagcactgttttagaagttagagtacaagaatctggaacaatacagtaacggtacaatttgaaaacccaaggtttaaatcaaggcaagccaaccaaaaattacgtacgaaacaacaaagatgtcggcacaaaaactgtgagagtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaACTCA-------ACAT-CCA-AAGTGTCGGATCGA-ATGGTAGATACGAGGTCA--------------AATAtag
gi|3 : TATAAGA-AGCACCAAAA--ATCAACAACACTCA-------A-ACATTCAAAGTGTCGGATCGA-ATAGTAGGTACTAAGTCAAATGAAAAATACTTAAAATG-------ACCATCGACA-CGCAAA--CAA---T--------T---TGTTTGGGATGACTTGT-C----CCTTCTTCAGGACGATAGAA----ATG--AA-AA-----TG-CA-ATAAAAATaataagga
gi|4 : AAAAGTTTCAACAACACACG-------ATAC-CCATCAGTGTCGGATCCACAAAGCTAATACAAGATCAGAAGA---------AAAATG-------ACCAACGACA-CG--AA--CAA---T------------TTC---GGACGACCCGTGCAGTGCCTTCATCAGGAC-----AA----ACG--TA-AA-GGTTTA-TATGTGAgcagactaacactataactaaactacaaacgaaacgtcttgcatatacattgaaattctctagtgtaatatgaggtagtagaaat
gi|5 : aAATACGCGAAAAGATCCATAACAAAAACAT-CAGTAATGGCACGATTTAAAAACACAAGGTCAAGGTCGATAGTCAAGGTCAAAACAAAGTAAC---------A-C----TGTAG---TGTGTTAGAAGACT-TACG------TGAAAGAATCTGGAACAATA----CAATGATGGTACAATTTGAAAtacatgtagctaaagatatatacggaatactacaacttgtaaacgaacttgagtgtacactgtaaagcacatg
gi|6 : aattagtACTGTTTTAAAAG--A-CAAAAATTCGTGAAAAGATCCGGACCAATACATTCAATAATGGTACGATTTAGAAACA-C
gi|6 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaAAATTCGTGAAAAGATCCGGACCAATA-CATTCAATAATGGTACGATTTAGAAACACTAGATC------Gtagatcg
gi|8 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaactgttttaaaagacaaCTAAAA--CCCAAATACACCCGTGCGGAAAAGC-CTAGACGTGTCGGATTCATGTACTGGCTACAAGGTCA--------------AGAATAATGTGTCACCATGAACA-CG--AA--CAA---T-TA---AATAGATCAAAAAGACGA--CGT-C----CCTTCTT
gi|9 : --------------AACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCT--GG-----CCGT-T----TCTTTTTCATGAC-----AA----ACG--AA-AA-GGTTTC-CA-agt
blockSeqs : C A T A AAGGTC CTTAATTACACT A ACT A AATTC C CATT A A G C A G T C GT TGCGGAA T A GT G T C GG A A C AATGAAAAATACTT A ATGTGTC A CA GC AAT AACTAGATAAA AA G AGTG GATAG TAGG GA C . G TG T T
blockSeqs : C . . T . CTCAGTAAATG C TG C A A . . . . . T . AC G T C AG A G G GAAGA A . . . . . TGCGATAAT AA . . . . A . . . G A
blockSeqs : T . AC . T A . A . . . C . AA G G C AG A A G . C . . . . . TAGATAAA AG . . . . . . . . A A
blockSeqs : A . . . T . TC G G T AC G G A . T . . . . . GAAAGAAA GA . . . . . . . . . G
blockSeqs : . . A . GA G C . G A T G . T . . . . . AAGATAAA TG . . . . . . . .
blockSeqs : . . . A . C . A C A . . A . . . . . TAAATAGA AA . . . . . . .
blockSeqs : . A . . A . . . . . AAGA G . . . . . . .
blockSeqs : . A . . . . . AAGA G . . . . . . .
blockSeqs : C . . . . T . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : AG ****
originalCons : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
finalCons : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCCCCTTCTTATTTGCATTGAAATGAATACGAAATAAAAATATGAACATACGTCATCACTAAGTAATTAAAACCCGATAACAAATAACACCTGTACATGTACATATTGAAATTCTCGAGTGCAAAATGGGGTAATAGAA
Alignments
lowQualScore : 222222 333333333333333 1111 22222 2222 22 777777777777777777777777777777777777777777777777777777777777777777777777777777 1111111 33333333333333 1111111 111111111111 11 1111 1
lowQualScore : 0 6 7 7 1 888888 222222222222222 8 5555 5 44444 1 0 1111 00 1 1 1 1 1 888888888888888888888888888888888888888888888888888888888888888888888888888888 1 6 99 8888888 3 5 88 4 1 6 88 2 3 7 77777777777777 1 4444444 3 55 55 666 555555555555 11 0 2 6666 88888 1111 88 3 3 3 99 1 1
lowQualScore : . . . . . ...... ............... . .... . ..... . . .... .. . . . . . .............................................................................. . . .. ....... . . .. . . . .. . . . .............. . ....... . .. .. ... ............ .. . . .... ..... .... .. . . . .. . .
lowQualScore : 7 7 3 3 0 888888 888888888888888 8 2222 6 55555 0 2 2222 77 0 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000 0 7 22 6666666 9 7 11 3 0 6 00 0 1 6 22222222222222 0 4444444 6 00 00 444 777777777777 11 1 9 1111 33333 4444 66 6 6 3 99 0 0
consensus : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
Reference ( family-2009 ) : AAATACGCGAAAAGATCCGGAACAAAAACATTCAGTAATGGTACGATNTAGAAACACAAGGTC------GATACTCAAGGCCGAAACGAAGTAACCTCAGT--AA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGNAAGAATCTGGAACAATA----CAATAACGGTACAATTTGAAAACA-CCNAGGTTTAAATCAAGGCGANCCAACCAAAAATTACGTACGAAACAACAAAGATGCNGGCNCAAAAACTNTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATNATACAAAACAGCACTAAAA--TCCAACAACACCCG-------ATAC-CTANAAGTGTCGGATCNACATAGTAGATACGAGGTCA--------------AANATG-------ACCAACGACA-CG--AA--CAA---T-AA---GATAAATCCTAAGGACGACCCGT-C----CCTTCTTCAGGAC-----AA----ACG--AA-AA-GGTTTA-CA-GTNAAGATAANGGGGCGGG
gi|1 : AAATACGCGAAAAGTTCCAGAA-AAAAACATTCAGTAATGGTACAATATAGAAACACAAAATC------GATACTAAAGGCCGAAACGAAGTAACATCAGTTAAA-CG--TTGAAGCACTGTTTTAGAAG--T-TAAGA----GTGCAACAATCTGGAACAACA----TAATAACGGTACAATTTGAAAATATCCTAGATTTAAATTAAGGCGATCCAACCAAAAATTATGTACGAAACAACAAAGATGCAGACTCAAAAACTTTGGGAGGGGGTGAGAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATAAATAATAATACAAAACAGTACTAAAA--TCTAACAACACCCG-------ATTT-CTATAAGTGTC-GATCTACATA-TAGATACAAGGTCA--------------AATATG-------GCCAACGACA-CG--AA--CAA---T-AA---AATAAATCCTAACGACGGCCCGT-C----CCTTCTTCAGTAC-----AAT---AGG--AA-AATGGTTTACCA-GTTAAGATAAAGGGGCGGG
gi|10 : AAT--TCCAACAACACCTG-------GTAC-CTAGTAGTGTTGGATCTACAT-GTAGATACAAGCACT--------------AAAGTG-------ACCAATGGCA-CA--AA--TAAAATT-TA---GATAAATCC
gi|11 : GACGACTAGT-G----CCCTCTTCAGGAA-----AA----ACG--AA-AA-GGTTTA-TA---TAAGATAc
gi|12 : aaaattAACGACA-CG--AA--CAA---T-GA---AAGAAATCATAAGTACGGCCCGT-C----CCTTTCTCAGGAC------A----ACA--AA-AA-GTTTTAGCA-GTAAAAATAATGGGGCGGGgataaagataaatatggacaaatcaactaaactaaattg
gi|13 : AACGAAAACT--GA--CAA---TTGC---GATAATTCCTG-GAACGACTCGT-C----CCTTTCTTAGGAT-----AA----ACGGAAA-AA-AGTTTc
gi|14 : agtaagtgtcattTATGATATAGAAACAAAAGGTA------GATACTCAAGACCGAAACGAAGCAACCTTAAT--TA-CACTTTGAAGAACTGTTTTAGAAG--TGTAAtaatc
gi|15 : gcTAG-TGCGAG--TA--------------AAAATG-------ACCAACGACA-CG--AAGCCAA---C-AACTAGATAAATTCTAAGTACTACTTGC-C----CCTTCCTCAGAA
gi|16 : aGAACGATCTGT-C----CCTTCTTCAGGAC-----GATAGGATG--AA-AA-
gi|17 : CCGT-C----CCTTCTTCAGGAC-----tgaaataaaattgcaaactaacactacaactaaactac
gi|18 : taannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCTG----CG---CGT-T----CTTT-TTCATGAC-----AA----ACG--AA-AA-GTTTg
gi|19 : ATAGATCCTAGGGACGACCCGT-C----TCTTTCTCAGGAT-----AA----ATGA-AA-AA-AGTTT
gi|2 : tttcaCCTCAGT--AAATG--TTGAAGCACTGTTTTAGAAG--T-TA-GA----GTACAAGAATCTGGAACAATA----CAGTAACGGTACAATTTGAAAAC--CCAAGGTTTAAATCAAGGCAAGCCAACCAAAAATTACGTACGAAACAACAAAGATGTCGGCACAAAAACTGTGAGAGtga
gi|2 : GGATAAATAATTATACAAAACAGCTCTAAAA--TCCAACAACACCCG-------ATAC-CTAACAGTGTC-----TACATA-TAGATACAAG-TCA--------------AATATG-------GCCAACGACA-TG--AA--CAA---T-AA---GATAAATCCTGACGACGGCCCGT-C----CCTTCCTCAGGAC-----AA----CAG--AACAA-AGTTTtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaggataaataattatacaaaacagctctaaaatccaacaacacccgatacctaacagtgtctacatatagatacaagtcaaatatggccaacgacatgaacaataagataaatcctgacgacggcccgtcccttcctcaggacaacagaacaaagttttag
gi|20 : cctcagtaaatgttgaagcactgttttagaagttagagtacaagaatctggaacaatacagtaacggtacaatttgaaaacccaaggtttaaatcaaggcaagccaaccaaaaattacgtacgaaacaacaaagatgtcggcacaaaaactgtgagagtaggcaaccataaatccaactggaaaataggtaaacatgggaatcaagttaatgcagaACTCA-------ACAT-CCA-AAGTGTCGGATCGA-ATGGTAGATACGAGGTCA--------------AATAtag
gi|3 : TATAAGA-AGCACCAAAA--ATCAACAACACTCA-------A-ACATTCAAAGTGTCGGATCGA-ATAGTAGGTACTAAGTCAAATGAAAAATACTTAAAATG-------ACCATCGACA-CGCAAA--CAA---T--------T---TGTTTGGGATGACTTGT-C----CCTTCTTCAGGACGATAGAA----ATG--AA-AA-----TG-CA-ATAAAAATaataagga
gi|4 : AAAAGTTTCAACAACACACG-------ATAC-CCATCAGTGTCGGATCCACAAAGCTAATACAAGATCAGAAGA---------AAAATG-------ACCAACGACA-CG--AA--CAA---T------------TTC---GGACGACCCGTGCAGTGCCTTCATCAGGAC-----AA----ACG--TA-AA-GGTTTA-TATGTGAgcagactaacactataactaaactacaaacgaaacgtcttgcatatacattgaaattctctagtgtaatatgaggtagtagaaat
gi|5 : aAATACGCGAAAAGATCCATAACAAAAACAT-CAGTAATGGCACGATTTAAAAACACAAGGTCAAGGTCGATAGTCAAGGTCAAAACAAAGTAAC---------A-C----TGTAG---TGTGTTAGAAGACT-TACG------TGAAAGAATCTGGAACAATA----CAATGATGGTACAATTTGAAAtacatgtagctaaagatatatacggaatactacaacttgtaaacgaacttgagtgtacactgtaaagcacatg
gi|6 : aattagtACTGTTTTAAAAG--A-CAAAAATTCGTGAAAAGATCCGGACCAATACATTCAATAATGGTACGATTTAGAAACA-C
gi|6 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaAAATTCGTGAAAAGATCCGGACCAATA-CATTCAATAATGGTACGATTTAGAAACACTAGATC------Gtagatcg
gi|8 : atttaccactaaataaattcaatttgaatgaatctgtgaacgaatagaaaacaagccgagatgagttgtgcttggtaactgttttaaaagacaaCTAAAA--CCCAAATACACCCGTGCGGAAAAGC-CTAGACGTGTCGGATTCATGTACTGGCTACAAGGTCA--------------AGAATAATGTGTCACCATGAACA-CG--AA--CAA---T-TA---AATAGATCAAAAAGACGA--CGT-C----CCTTCTT
gi|9 : --------------AACATG-------ACCAACGACA-CG--AA--CAA---T-AA---GA-----CCT--GG-----CCGT-T----TCTTTTTCATGAC-----AA----ACG--AA-AA-GGTTTC-CA-agt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TGCCCCTTCTTATTTGCATTGAAATGAATACGAAATAAAAATATGAACATACGTCATCACTAAGTAATTAAAACCCGATAACAAATAACACCTGTACATGTACATATTGAAATTCTCGAGTGCAAAATGGGGTAATAGAA