lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 22222222 11111 11111 11 2 4444 3333 1 1111 5555555555555555555555555555555555555555555555555555555555555555555 1 555555555555555555 1 1 11111 2 222 2 2 777777777777777777777777777777777777777777777777777777777777777777 1 4
lowQualScore : 77 77 777777 5 5 3 00000000 6 6 44444 88888 4 55 0 6666 444 3333 2 3 7777 6 5555555555555555555555555555555555555555555555555555555555555555555 3 777777777777777777 0 3 3 44444 7 555 0 0 2 6 888888888888888888888888888888888888888888888888888888888888888888 7 0
lowQualScore : .. .. ...... . . . ........ . . ..... ..... . .. . .... ... .... . . .... . ................................................................... . .................. . . . ..... . ... . . . . .................................................................. . .
lowQualScore : 99 11 222222 0 0 4 00000000 7 7 66666 55555 5 00 3 0000 555 0000 5 3 3333 7 3333333333333333333333333333333333333333333333333333333333333333333 3 000000000000000000 7 3 3 77777 5 000 0 0 5 0 000000000000000000000000000000000000000000000000000000000000000000 0 0
consensus : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCNAA---A-AGATTNACAAAAT-GAGAGCCTNGNGCANACTACGGA-CCTC-CG-ACAAA----ANCGAAG-----CGG-ATNAGGT--------GCC-GTGGA--------AGG----AGCA----TCCT-CTGCCGA---C-GGT-CANCA----CCCGCC-GTG-AGCCCTTAGT-CGA-GATCAGGTAGACCGGGCATTAACGCGTAGTTAAATC-AGTGTATGGGAAACG---GCTTAACAATTGCTATGAATCA---CTGCCG----ATGA---AGCAAATTATTTG-AATCGAAA
Reference ( gi|2 ) : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CAT-AA--TCCAA---A-AAATTTACAAAATCGAGTG--TAGGGCAA-C-ACGGA-CCTC-CG-ACAAA----AGCGAAG-----CAG-ATCAGGT--------GCC-ATGGG--------AG-----AGCA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGA-AATAAAGTAAA-CGGG-ATT-ACCCGTAGTCAAATCTAGTA---GGAAAACGACAGTCTAACAA-AGGTATGAAACAAATCAGTCAAAATATGACTTAGT--ATAATTTGTAATCGAAAACAGTTCTATAATACGGATCCCCATCTACAGGTT
gi|7 : ACAAAAGGG---GAAG-TTAAC---TG--T-G-TCAAA------G-TAAT-CAT-AA--TCAAA---A-ACGTTGACA
gi|18 : ctttatgatgtcacagcaatgtaaaataatgaacgcaatgatacgaattacttggattctgtaagctgtcgattcctactcacgtACAAAAAGG--CGAAG--TAACATCTG--T-G-TCCAA-----CGCTAAT-CAT-Atacga
gi|11 : cattACAAAAAGG--CGAAG-TTAACAT-T---T-G-TC-AA-----CG-TAAA-CGT-AA-----AATGTA-AGATTT-CAAAATGGA
gi|3 : gatgagtttcattttacaaatctttgattagttaaaACAAAAAGG--CGAAG-TTAAGAT-TG--T-G-TCAAA-----
gi|17 : tgatttaaactaaccgctttcaatccccctattatctcatttattacacaatttttcatgattaacggtgtcgaatgcattttgtaaatctaacataatcattcctgtgaaaagtcctttggatgtgttatctctaatataatctataACAAAAAGG--CGAAG-TTAACAT-CC--T-G-TCAAA-----
gi|13 : ctaataattatttataACAAAAAGGGCCGAAG-GTAACAT-TG--TCG-TCTAATATCGCG-TAATGCATCAA--TCCAA---A-AAA
gi|15 : tatAAAAAGG--CGAAGATTAACAT-TGGGT-G-TCAAA-----CT-TAAT-CAT-AG--T
gi|1 : atacaAACA---G--T-GATCAAT-----C-----T-CGT-AAGTTCTAA---ATAGAATAAAAAAAT-AAGAG--TTGGGCAAAC-ATGGA-CCCC-TGGACACA----CCAGAGG-----TGGGATTAGAT--------GCC--TAGG--------AGG----AGTAATAATCCC-CTGCCGA---CTGAT-CAA-A----CCCGCC-GTG-AACCCATTGT-CTT-GATCAGATAAA-C-GG-ATTAATGCGTAGTTAAATC-AGTGTATGGGAAACG---GCTTAACAATTGCTATGAATCA---CTGCCG----ATGA---AGCAAATTATTTG-AATCGAAA
gi|9 : caatatttacttcgtcgtcatgctccatggatattgttttgaacaagtaaattaaagacatctgtgcatgttagtcgtttttttaaattttcgatgatttttaaaagacatttacttgtaaatgcaaatataacgAAAATTGAG-GCCTAATGCAC-CTACTGAGCCTC-CA-ACAAA----ATCGAAA-----TAT-A-AAGGT--------GGC-AAGGA--------AGGATTAAG-A----TCCTGCTGCTGA---C-G---TACCA----CCCACC-GAA-AGCCATAAAT-CGA-ctgcaaaaagtttaactatatcgtatcacctaggtcaaaataagcttcatttcttataatctaatttttggaaaaaaaaatgcatttaacgttcatgtgatga
gi|5 : GA-CCTCTCG-A-AAATAACAGCGAAGGGATACGG-ATCAGGTCGGCGGGTGCCTGTGGAGGTAGATAAG-----ATCA----TCCT-CTGCTGAGATC-GGTCCATCATGACCCCACCTGTGAAGACCTTAGTCCGATAAT-AAGTAGACCGGGCATT-ACC
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): GACAATTTGTATTGAAAAAAATAACTGTAACAAAACAAACTGTGATAATCTTGAATAAATAGAATTAAAAAGAAGGAGTCGGGCAAATATGGTCCCCCGGATAAACCAAGGTGCGGACCATGGCATAGAAATAAAAATAAACATTCCTCTTCGACTGTCTCACCCCACT
Unaligned ( gi|6 ): TTTCATAATTTTTGTACAGATACTAAATTAACGAATATGAAAAACATAGTTTCCAGGTCACACTAGTTGCGAGATAAGATGCATTAAAGAAGTAAGTATTCCTTGCTGATCAGCCAAACCCACCGCAAGCACCATTCCTGGATCA
Unaligned ( gi|8 ): TAAACGAACAAATACCAACGGATGATCAATCTTTCCAAGTCTAATAACAGAATAAAAAAAAAAAAAGAGTTGCAACAGAACCAACCCCATATATACCAGATGTGGGACTGGTCCAGGAAG
Unaligned ( gi|10 ): AATCAATGCCATAACTTATATATGGAATACAACATTAAGACTTAGGCAAACATGGATCTCCTGCATGGTATTGTAGGTGTACATGCAAGTATTTCCTGTCGACGGAGTCAAA
Unaligned ( gi|12 ): GAAAATAGTGAAACAACGATGCAATACCGTAAATCCTAACGGGGATTAAGAGCTGAGCAAACATAGGCCCCTGGA
Unaligned ( gi|14 ): TGGGCAAACATGGACCCATGGAAATACCCGAGGTCGGAGATCAGGCCTGGAGG
Unaligned ( gi|16 ): GCATATATAACAAACACTGATAAATCTCGTAAGCTCCAAACAGAAT
Alignments
lowQualScore : 11111111 111 22222222 3333 1 1 11111 222222222 666666666666666666666666666666666666666 1 222222222222222222 1 1 1 11 2 2 222 333 11 4444444444444 333 11 2
lowQualScore : 66 55 4 66 4 4 2 44444444 5 1 5 99 3 444 8 1 44 11111111 1 1 5555 0 0 88888 1 777777777 44 000000000000000000000000000000000000000 0 2 111111111111111111 0 0 0 3 3 0 0 33 3 7 2 0 111 555 99 2 4 7777777777777 555 88 4 0
lowQualScore : .. .. . .. . . . ........ . . . .. . ... . . .. ........ . . .... . . ..... . ......... .. ....................................... . . .................. . . . . . . . .. . . . . ... ... .. . . ............. ... .. . .
lowQualScore : 99 11 4 11 4 4 0 77777777 7 4 7 22 8 000 0 4 22 55555555 0 0 0000 0 0 55555 0 222222222 22 000000000000000000000000000000000000000 0 0 888888888888888888 0 0 0 7 7 7 7 33 3 3 5 0 555 000 55 5 0 5555555555555 000 55 0 0
consensus : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCCAA---A-AGATTNACAAAAT-GAGAGC-TAGGGCA-AC-ACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATCAGGT--------GCC-GTGGGAGG----AG-------CA----TCCT-CTGCTGA---C-GGTC-ACCA----CCCGCC-GTGA-GCCCTTAGTC-GANATNAAGTAAACCGGG-ATTAACGCGTAGTCAAATCTAGTGTATGGGAAACGACAGCCTAACAATNGNTATGAANCAAATCNGCCGAAATATGACTTAGCAAATNATTTGTAATCGAAA
Reference ( family-20 ) : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCNAA---A-AGATTNACAAAAT-GAGAGCCTNGNGCANACTACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATNAGGT--------GCC-GTGGAAGG----AG-------CA----TCCT-CTGCCGA---C-GGTC-ANCA----CCCGCC-GTGA-GCCCTTAGTC-GAGATCAGGTAGACCGGGCATTAACGCGTAGTTAAATC-AGTGTATGGGAAACG---GCTTAACAATTGCTATGAATCA---CTGCCG----ATGA---AGCAAATTATTTG-AATCGAAA
gi|1 : AACA---G--T-GATCAAT-----C-----T-CGT-AAGTTCTAA---ATAGAATAAAAAAAT-AAGAG--TTGGGCAAAC-ATGGA-CCCC-TGGA---CACACCAGAGG-----TGGGATTAGAT--------GCC--TAGGAGG----AG-------TAATAATCCC-CTGCCGA---CTGATC-AA-A----CCCGCC-GTGA-ACCCATTGTC-TTGATCAGATAAAC--GG-ATTAATGCGTAGTTAAATC-AGTGTATGGGAAACG---GCTTAACAATTGCTATGAATCA---CTGCCG----ATGA---AGCAAATTATTTG-AATCGAAA
gi|11 : caatatttacttcgtcgtcatgctccatggatattgttttgaacaagtaaattaaagacatctgtgcatgttagtcgtttttttaaattttcgatgatttttaaaagacatttacttgtaaatgcaaatataacgACAAAAAGG--CGAAG-TTAACAT-T---T-G-TC-AA-----CG-TAAA-CGT-AA-----AATGTA-AGATTT-CAAAAT-Gctgcaaaaagtttaactatatcgtatcacctaggtcaaaataagcttcatttcttataatctaatttttggaaaaaaaaatgcatttaacgttcatgtgatga
gi|13 : gatgagtttcattttacaaatctttgattagttaaaACAAAAAGGGCCGAAG-GTAACAT-TG--TCG-TCTAATATCGCG-TAATGCATCAA--TCCAA---A-AAAga
gi|15 : tatAAAAAGG--CGAAGATTAACAT-TGGGT-G-TCAAA-----CT-TAAT-CAT-AG--T
gi|17 : atacaACAAAAAGG--CGAAG-TTAACAT-CC--T-G-TCAAA-----
gi|18 : ctaataattatttataACAAAAAGG--CGAAG--TAACATCTG--T-G-TCCAA-----CGCTAAT-CAT-A
gi|2 : cattACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CAT-AA--TCCAA---A-AAATTTACAAAAT--CGAGTGTAGGGCA-AC-ACGGA-CCTC-CG-A---CAAAAGCGAAG-----CAG-ATCAGGT--------GCC-ATGGGA-G----AG-------CA----TCCT-CTGCTGA---C-GGTC-ACCA----CCCGCC-GTGA-GCCCTTAGTC-GAAATAAAGTAAA-CGGG-ATT-ACCCGTAGTCAAATCTAGTA---GGAAAACGACAGTCTAACAA-AGGTATGAAACAAATCAGTCAAAATATGACTTAGT--ATAATTTGTAATCGAAA
gi|3 : ACAAAAAGG--CGAAG-TTAAGAT-TG--T-G-TCAAA-----acagttctataatacggatccccatctacaggtt
gi|5 : tgatttaaactaaccgctttcaatccccctattatctcatttattacacaatttttcatgattaacggtgtcgaatgcattttgtaaatctaacataatcattcctgtgaaaagtcctttggatgtgttatctctaatataatctataGA-CCTCTCG-AAAATAACAGCGAAGGGATACGG-ATCAGGTCGGCGGGTGCCTGTGGAGGT----AGATAAGATCA----TCCT-CTGCTGAGATC-GGTCCATCATGACCCCACCTGTGAAGACCTTAGTCCGATAATAAGTAGACCGGGCATTA
gi|7 : ACAAAAGGG---GAAG-TTAAC---TG--T-G-TCAAA------G-TAAT-CAT-AA--TCAAA---A-ACGTTGACAcc
gi|9 : ctttatgatgtcacagcaatgtaaaataatgaacgcaatgatacgaattacttggattctgtaagctgtcgattcctactcacgtAAAATTGAG-GCCTAATGCAC-CTACTGAGCCTC-CA-A---CAAAATCGAAA-----TAT-A-AAGGT--------GGC-AAGGAAGGATTAAG--------A----TCCTGCTGCTGA---C-G--T-ACCA----CCCACC-GAAA-GCCATAAATC-GAtacga
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GACAATTTGTATTGAAAAAAATAACTGTAACAAAACAAACTGTGATAATCTTGAATAAATAGAATTAAAAAGAAGGAGTCGGGCAAATATGGTCCCCCGGATAAACCAAGGTGCGGACCATGGCATAGAAATAAAAATAAACATTCCTCTTCGACTGTCTCACCCCACT
Unaligned ( gi|6 ): TTTCATAATTTTTGTACAGATACTAAATTAACGAATATGAAAAACATAGTTTCCAGGTCACACTAGTTGCGAGATAAGATGCATTAAAGAAGTAAGTATTCCTTGCTGATCAGCCAAACCCACCGCAAGCACCATTCCTGGATCA
Unaligned ( gi|8 ): TAAACGAACAAATACCAACGGATGATCAATCTTTCCAAGTCTAATAACAGAATAAAAAAAAAAAAAGAGTTGCAACAGAACCAACCCCATATATACCAGATGTGGGACTGGTCCAGGAAG
Unaligned ( gi|10 ): AATCAATGCCATAACTTATATATGGAATACAACATTAAGACTTAGGCAAACATGGATCTCCTGCATGGTATTGTAGGTGTACATGCAAGTATTTCCTGTCGACGGAGTCAAA
Unaligned ( gi|12 ): GAAAATAGTGAAACAACGATGCAATACCGTAAATCCTAACGGGGATTAAGAGCTGAGCAAACATAGGCCCCTGGA
Unaligned ( gi|14 ): TGGGCAAACATGGACCCATGGAAATACCCGAGGTCGGAGATCAGGCCTGGAGG
Unaligned ( gi|16 ): GCATATATAACAAACACTGATAAATCTCGTAAGCTCCAAACAGAAT
Alignments
lowQualScore : 11111111 111 2 111 111 1 1 11111 222222222 33333333 22 666666666666666666 1 222222222 2222 1 1 1 11 1 1 222 222 11 222 2222 222 11 1
lowQualScore : 66 55 4 66 4 4 2 44444444 5 1 5 99 3 444 8 1 44 0 555 7 666 0 0 88888 1 777777777 33 66666666 00 2 222222222222222222 0 111111111 22 1111 0 0 0 1 1 33 3 7 2 5 111 111 66 1 1 111 1 4444 111 88 1 5
lowQualScore : .. .. . .. . . . ........ . . . .. . ... . . .. . ... . ... . . ..... . ......... .. ........ .. . .................. . ......... .. .... . . . . . .. . . . . ... ... .. . . ... . .... ... .. . .
lowQualScore : 99 11 4 11 4 4 0 77777777 7 4 7 22 2 000 0 4 22 0 000 3 777 0 0 55555 0 222222222 55 22222222 55 5 555555555555555555 0 000000000 88 2222 0 0 0 0 0 33 3 3 5 5 555 000 55 0 0 555 0 5555 000 55 0 5
consensus : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCCAA---A-AGATTNACAAAATCGAGNGCTAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATCAGGT--------GCC-GTGGGAGGA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGANATNAAGTAAACCGGG-ATTAACGCGTAGTCAAATCTAGTGTATGGGAAACGACAGCCTAACAATNGNTATGAANCAAATCNGCCGAAATATGACTTAGCAAATNATTTGTAATCGAAA
Reference ( family-20 ) : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCCAA---A-AGATTNACAAAAT-GAGAGCTAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATCAGGT--------GCC-GTGGGAGGA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGANATNAAGTAAACCGGG-ATTAACGCGTAGTCAAATCTAGTGTATGGGAAACGACAGCCTAACAATNGNTATGAANCAAATCNGCCGAAATATGACTTAGCAAATNATTTGTAATCGAAA
gi|1 : AACA---G--T-GATCAAT-----C-----T-CGT-AAGTTCTAA---ATAGAATAAAAAAAT-AAGAGTT-GGGCAAAC-ATGGA-CCCC-TGGA---CACACCAGAGG-----TGGGATTAGAT--------GCC--TAGGAGGA----G-------TAATAATCCC-CTGCCGA---CTGAT-CAA-A----CCCGCC-GTG-AACCCATTGT-CTTGATCAGATAAAC--GG-ATTAATGCGTAGTTAAATC-AGTGTATGGGAAACG---GCTTAACAATTGCTATGAATCA---CTGCCG----ATGA---AGCAAATTATTTG-AATCGAAA
gi|11 : caatatttacttcgtcgtcatgctccatggatattgttttgaacaagtaaattaaagacatctgtgcatgttagtcgtttttttaaattttcgatgatttttaaaagacatttacttgtaaatgcaaatataacgACAAAAAGG--CGAAG-TTAACAT-T---T-G-TC-AA-----CG-TAAA-CGT-AA-----AATGTA-AGATTT-CAAAAT-Gctgcaaaaagtttaactatatcgtatcacctaggtcaaaataagcttcatttcttataatctaatttttggaaaaaaaaatgcatttaacgttcatgtgatga
gi|13 : gatgagtttcattttacaaatctttgattagttaaaACAAAAAGGGCCGAAG-GTAACAT-TG--TCG-TCTAATATCGCG-TAATGCATCAA--TCCAA---A-AAAga
gi|15 : tatAAAAAGG--CGAAGATTAACAT-TGGGT-G-TCAAA-----CT-TAAT-CAT-AG--T
gi|17 : atacaACAAAAAGG--CGAAG-TTAACAT-CC--T-G-TCAAA-----
gi|18 : ctaataattatttataACAAAAAGG--CGAAG--TAACATCTG--T-G-TCCAA-----CGCTAAT-CAT-A
gi|2 : cattACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CAT-AA--TCCAA---A-AAATTTACAAAATCGAGTG-TAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAAGCGAAG-----CAG-ATCAGGT--------GCC-ATGGGA-GA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGAAATAAAGTAAA-CGGG-ATT-ACCCGTAGTCAAATCTAGTA---GGAAAACGACAGTCTAACAA-AGGTATGAAACAAATCAGTCAAAATATGACTTAGT--ATAATTTGTAATCGAAA
gi|3 : ACAAAAAGG--CGAAG-TTAAGAT-TG--T-G-TCAAA-----acagttctataatacggatccccatctacaggtt
gi|5 : tgatttaaactaaccgctttcaatccccctattatctcatttattacacaatttttcatgattaacggtgtcgaatgcattttgtaaatctaacataatcattcctgtgaaaagtcctttggatgtgttatctctaatataatctataGA-CCTCTCG-AAAATAACAGCGAAGGGATACGG-ATCAGGTCGGCGGGTGCCTGTGGAGGTA----GATAAGATCA----TCCT-CTGCTGAGATC-GGTCCATCATGACCCCACCTGTGAAGACCTTAGTCCGATAATAAGTAGACCGGGCATTA
gi|7 : ACAAAAGGG---GAAG-TTAAC---TG--T-G-TCAAA------G-TAAT-CAT-AA--TCAAA---A-ACGTTGACAcc
gi|9 : ctttatgatgtcacagcaatgtaaaataatgaacgcaatgatacgaattacttggattctgtaagctgtcgattcctactcacgtAAAATTGAGGCCTAATGCAC-CTACTGAGCCTC-CA-A---CAAAATCGAAA-----TAT-A-AAGGT--------GGC-AAGGAAGGATTAAG--------A----TCCTGCTGCTGA---C-G---TACCA----CCCACC-GAA-AGCCATAAAT-CGAtacga
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GACAATTTGTATTGAAAAAAATAACTGTAACAAAACAAACTGTGATAATCTTGAATAAATAGAATTAAAAAGAAGGAGTCGGGCAAATATGGTCCCCCGGATAAACCAAGGTGCGGACCATGGCATAGAAATAAAAATAAACATTCCTCTTCGACTGTCTCACCCCACT
Unaligned ( gi|6 ): TTTCATAATTTTTGTACAGATACTAAATTAACGAATATGAAAAACATAGTTTCCAGGTCACACTAGTTGCGAGATAAGATGCATTAAAGAAGTAAGTATTCCTTGCTGATCAGCCAAACCCACCGCAAGCACCATTCCTGGATCA
Unaligned ( gi|8 ): TAAACGAACAAATACCAACGGATGATCAATCTTTCCAAGTCTAATAACAGAATAAAAAAAAAAAAAGAGTTGCAACAGAACCAACCCCATATATACCAGATGTGGGACTGGTCCAGGAAG
Unaligned ( gi|10 ): AATCAATGCCATAACTTATATATGGAATACAACATTAAGACTTAGGCAAACATGGATCTCCTGCATGGTATTGTAGGTGTACATGCAAGTATTTCCTGTCGACGGAGTCAAA
Unaligned ( gi|12 ): GAAAATAGTGAAACAACGATGCAATACCGTAAATCCTAACGGGGATTAAGAGCTGAGCAAACATAGGCCCCTGGA
Unaligned ( gi|14 ): TGGGCAAACATGGACCCATGGAAATACCCGAGGTCGGAGATCAGGCCTGGAGG
Unaligned ( gi|16 ): GCATATATAACAAACACTGATAAATCTCGTAAGCTCCAAACAGAAT
Alignments
lowQualScore : 11111111 111 1 1 111 1 1 11111 222222222 33333333 22 666666666666666666 1 222222222 2222 1 1 1 11 1 1 222 222 11 222 2222 222 11 1
lowQualScore : 66 55 4 66 4 4 2 44444444 5 1 5 99 3 444 8 1 44 2 1 2 7 666 0 0 88888 1 777777777 33 66666666 00 2 222222222222222222 0 111111111 22 1111 0 0 0 1 1 33 3 7 2 5 111 111 66 1 1 111 1 4444 111 88 1 5
lowQualScore : .. .. . .. . . . ........ . . . .. . ... . . .. . . . . ... . . ..... . ......... .. ........ .. . .................. . ......... .. .... . . . . . .. . . . . ... ... .. . . ... . .... ... .. . .
lowQualScore : 99 11 4 11 4 4 0 77777777 7 4 7 22 2 000 0 4 22 8 0 0 3 777 0 0 55555 0 222222222 55 22222222 55 5 555555555555555555 0 000000000 88 2222 0 0 0 0 0 33 3 3 5 5 555 000 55 0 0 555 0 5555 000 55 0 5
consensus : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCCAA---A-AGATTNACAAAATCGAGNGCTAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATCAGGT--------GCC-GTGGGAGGA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGANATNAAGTAAACCGGG-ATTAACGCGTAGTCAAATCTAGTGTATGGGAAACGACAGCCTAACAATNGNTATGAANCAAATCNGCCGAAATATGACTTAGCAAATNATTTGTAATCGAAA
Reference ( family-20 ) : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCCAA---A-AGATTNACAAAATCGAGNGCTAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATCAGGT--------GCC-GTGGGAGGA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGANATNAAGTAAACCGGG-ATTAACGCGTAGTCAAATCTAGTGTATGGGAAACGACAGCCTAACAATNGNTATGAANCAAATCNGCCGAAATATGACTTAGCAAATNATTTGTAATCGAAA
gi|1 : AACA---G--T-GATCAAT-----C-----T-CGT-AAGTTCTAA---ATAGAATAAAAAAAT-AAGAGTT-GGGCAAAC-ATGGA-CCCC-TGGA---CACACCAGAGG-----TGGGATTAGAT--------GCC--TAGGAGGA----G-------TAATAATCCC-CTGCCGA---CTGAT-CAA-A----CCCGCC-GTG-AACCCATTGT-CTTGATCAGATAAAC--GG-ATTAATGCGTAGTTAAATC-AGTGTATGGGAAACG---GCTTAACAATTGCTATGAATCA---CTGCCG----ATGA---AGCAAATTATTTG-AATCGAAA
gi|11 : caatatttacttcgtcgtcatgctccatggatattgttttgaacaagtaaattaaagacatctgtgcatgttagtcgtttttttaaattttcgatgatttttaaaagacatttacttgtaaatgcaaatataacgACAAAAAGG--CGAAG-TTAACAT-T---T-G-TC-AA-----CG-TAAA-CGT-AA-----AATGTA-AGATTT-CAAAATGGActgcaaaaagtttaactatatcgtatcacctaggtcaaaataagcttcatttcttataatctaatttttggaaaaaaaaatgcatttaacgttcatgtgatga
gi|13 : gatgagtttcattttacaaatctttgattagttaaaACAAAAAGGGCCGAAG-GTAACAT-TG--TCG-TCTAATATCGCG-TAATGCATCAA--TCCAA---A-AAA
gi|15 : tatAAAAAGG--CGAAGATTAACAT-TGGGT-G-TCAAA-----CT-TAAT-CAT-AG--T
gi|17 : atacaACAAAAAGG--CGAAG-TTAACAT-CC--T-G-TCAAA-----
gi|18 : ctaataattatttataACAAAAAGG--CGAAG--TAACATCTG--T-G-TCCAA-----CGCTAAT-CAT-A
gi|2 : cattACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CAT-AA--TCCAA---A-AAATTTACAAAATCGAGTG-TAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAAGCGAAG-----CAG-ATCAGGT--------GCC-ATGGGA-GA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGAAATAAAGTAAA-CGGG-ATT-ACCCGTAGTCAAATCTAGTA---GGAAAACGACAGTCTAACAA-AGGTATGAAACAAATCAGTCAAAATATGACTTAGT--ATAATTTGTAATCGAAA
gi|3 : ACAAAAAGG--CGAAG-TTAAGAT-TG--T-G-TCAAA-----acagttctataatacggatccccatctacaggtt
gi|5 : tgatttaaactaaccgctttcaatccccctattatctcatttattacacaatttttcatgattaacggtgtcgaatgcattttgtaaatctaacataatcattcctgtgaaaagtcctttggatgtgttatctctaatataatctataGA-CCTCTCG-AAAATAACAGCGAAGGGATACGG-ATCAGGTCGGCGGGTGCCTGTGGAGGTA----GATAAGATCA----TCCT-CTGCTGAGATC-GGTCCATCATGACCCCACCTGTGAAGACCTTAGTCCGATAATAAGTAGACCGGGCATTA
gi|7 : ACAAAAGGG---GAAG-TTAAC---TG--T-G-TCAAA------G-TAAT-CAT-AA--TCAAA---A-ACGTTGACAcc
gi|9 : ctttatgatgtcacagcaatgtaaaataatgaacgcaatgatacgaattacttggattctgtaagctgtcgattcctactcacgtAAAATTGAGGCCTAATGCAC-CTACTGAGCCTC-CA-A---CAAAATCGAAA-----TAT-A-AAGGT--------GGC-AAGGAAGGATTAAG--------A----TCCTGCTGCTGA---C-G---TACCA----CCCACC-GAA-AGCCATAAAT-CGAtacga
blockSeqs : GC AT C GG C . T TATCGCG G G C . C TGT . G TA G T C A CT G T AAAA G GGATACGG TC CGGCGGGT TG G GATAAGATCA G GATCGGTC CC TGAC T A C A A CC C A C T . ACA A G A AAT A AAAT CTT . A T
blockSeqs : . G . . . . A CGC . A . . C . . A GA C G . A C . . A G CAG TC . A G TTAAGA . CGGT TC . . . . T T C . .
blockSeqs : . T . . . . A CG . A . . A . . A T T . . A T TAT A . A . GCA . CG CC . . . .
blockSeqs : . T . . . . C CT . A . . . . . C
blockSeqs : . T . . . . A CG . A . .
blockSeqs : . T . . . . A G . A .
blockSeqs : . . . . . . A
blockSeqs : . . . . .
blockSeqCons : CG****** **
originalCons : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCCAA---A-AGATTNACAAAATCGAGNGCTAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATCAGGT--------GCC-GTGGGAGGA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGANATNAAGTAAACCGGG-ATTAACGCGTAGTCAAATCTAGTGTATGGGAAACGACAGCCTAACAATNGNTATGAANCAAATCNGCCGAAATATGACTTAGCAAATNATTTGTAATCGAAA
finalCons : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAACG------TAAT-CGT-AA--TCCAA---A-AGATTNACAAAATCGAGNGCTAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATCAGGT--------GCC-GTGGGAGGA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGANATNAAGTAAACCGGG-ATTAACGCGTAGTCAAATCTAGTGTATGGGAAACGACAGCCTAACAATNGNTATGAANCAAATCNGCCGAAATATGACTTAGCAAATNATTTGTAATCGAAA
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GACAATTTGTATTGAAAAAAATAACTGTAACAAAACAAACTGTGATAATCTTGAATAAATAGAATTAAAAAGAAGGAGTCGGGCAAATATGGTCCCCCGGATAAACCAAGGTGCGGACCATGGCATAGAAATAAAAATAAACATTCCTCTTCGACTGTCTCACCCCACT
Unaligned ( gi|6 ): TTTCATAATTTTTGTACAGATACTAAATTAACGAATATGAAAAACATAGTTTCCAGGTCACACTAGTTGCGAGATAAGATGCATTAAAGAAGTAAGTATTCCTTGCTGATCAGCCAAACCCACCGCAAGCACCATTCCTGGATCA
Unaligned ( gi|8 ): TAAACGAACAAATACCAACGGATGATCAATCTTTCCAAGTCTAATAACAGAATAAAAAAAAAAAAAGAGTTGCAACAGAACCAACCCCATATATACCAGATGTGGGACTGGTCCAGGAAG
Unaligned ( gi|10 ): AATCAATGCCATAACTTATATATGGAATACAACATTAAGACTTAGGCAAACATGGATCTCCTGCATGGTATTGTAGGTGTACATGCAAGTATTTCCTGTCGACGGAGTCAAA
Unaligned ( gi|12 ): GAAAATAGTGAAACAACGATGCAATACCGTAAATCCTAACGGGGATTAAGAGCTGAGCAAACATAGGCCCCTGGA
Unaligned ( gi|14 ): TGGGCAAACATGGACCCATGGAAATACCCGAGGTCGGAGATCAGGCCTGGAGG
Unaligned ( gi|16 ): GCATATATAACAAACACTGATAAATCTCGTAAGCTCCAAACAGAAT
Alignments
lowQualScore : 11111111 111 1 1 111 1 1 11111 222222222 33333333 22 666666666666666666 1 222222222 2222 1 1 1 11 1 1 222 222 11 222 2222 222 11 1
lowQualScore : 66 55 4 66 4 4 2 44444444 5 1 5 99 3 444 8 1 44 2 1 2 7 666 0 0 88888 1 777777777 33 66666666 00 2 222222222222222222 0 111111111 22 1111 0 0 0 1 1 33 3 7 2 5 111 111 66 1 1 111 1 4444 111 88 1 5
lowQualScore : .. .. . .. . . . ........ . . . .. . ... . . .. . . . . ... . . ..... . ......... .. ........ .. . .................. . ......... .. .... . . . . . .. . . . . ... ... .. . . ... . .... ... .. . .
lowQualScore : 99 11 4 11 4 4 0 77777777 7 4 7 22 2 000 0 4 22 8 0 0 3 777 0 0 55555 0 222222222 55 22222222 55 5 555555555555555555 0 000000000 88 2222 0 0 0 0 0 33 3 3 5 5 555 000 55 0 0 555 0 5555 000 55 0 5
consensus : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCCAA---A-AGATTNACAAAATCGAGNGCTAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATCAGGT--------GCC-GTGGGAGGA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGANATNAAGTAAACCGGG-ATTAACGCGTAGTCAAATCTAGTGTATGGGAAACGACAGCCTAACAATNGNTATGAANCAAATCNGCCGAAATATGACTTAGCAAATNATTTGTAATCGAAA
Reference ( family-20 ) : ACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CGT-AA--TCCAA---A-AGATTNACAAAATCGAGNGCTAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAANCGAAG-----CGG-ATCAGGT--------GCC-GTGGGAGGA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGANATNAAGTAAACCGGG-ATTAACGCGTAGTCAAATCTAGTGTATGGGAAACGACAGCCTAACAATNGNTATGAANCAAATCNGCCGAAATATGACTTAGCAAATNATTTGTAATCGAAA
gi|1 : AACA---G--T-GATCAAT-----C-----T-CGT-AAGTTCTAA---ATAGAATAAAAAAAT-AAGAGTT-GGGCAAAC-ATGGA-CCCC-TGGA---CACACCAGAGG-----TGGGATTAGAT--------GCC--TAGGAGGA----G-------TAATAATCCC-CTGCCGA---CTGAT-CAA-A----CCCGCC-GTG-AACCCATTGT-CTTGATCAGATAAAC--GG-ATTAATGCGTAGTTAAATC-AGTGTATGGGAAACG---GCTTAACAATTGCTATGAATCA---CTGCCG----ATGA---AGCAAATTATTTG-AATCGAAA
gi|11 : caatatttacttcgtcgtcatgctccatggatattgttttgaacaagtaaattaaagacatctgtgcatgttagtcgtttttttaaattttcgatgatttttaaaagacatttacttgtaaatgcaaatataacgACAAAAAGG--CGAAG-TTAACAT-T---T-G-TC-AA-----CG-TAAA-CGT-AA-----AATGTA-AGATTT-CAAAATGGActgcaaaaagtttaactatatcgtatcacctaggtcaaaataagcttcatttcttataatctaatttttggaaaaaaaaatgcatttaacgttcatgtgatga
gi|13 : gatgagtttcattttacaaatctttgattagttaaaACAAAAAGGGCCGAAG-GTAACAT-TG--TCG-TCTAATATCGCG-TAATGCATCAA--TCCAA---A-AAA
gi|15 : tatAAAAAGG--CGAAGATTAACAT-TGGGT-G-TCAAA-----CT-TAAT-CAT-AG--T
gi|17 : atacaACAAAAAGG--CGAAG-TTAACAT-CC--T-G-TCAAA-----
gi|18 : ctaataattatttataACAAAAAGG--CGAAG--TAACATCTG--T-G-TCCAA-----CGCTAAT-CAT-A
gi|2 : cattACAAAAAGG--CGAAG-TTAACAT-TG--T-G-TCAAA-----CG-TAAT-CAT-AA--TCCAA---A-AAATTTACAAAATCGAGTG-TAGGGCAA-C-ACGGA-CCTC-CG-A---CAAAAGCGAAG-----CAG-ATCAGGT--------GCC-ATGGGA-GA----G-------CA----TCCT-CTGCTGA---C-GGT-CACCA----CCCGCC-GTG-AGCCCTTAGT-CGAAATAAAGTAAA-CGGG-ATT-ACCCGTAGTCAAATCTAGTA---GGAAAACGACAGTCTAACAA-AGGTATGAAACAAATCAGTCAAAATATGACTTAGT--ATAATTTGTAATCGAAA
gi|3 : ACAAAAAGG--CGAAG-TTAAGAT-TG--T-G-TCAAA-----acagttctataatacggatccccatctacaggtt
gi|5 : tgatttaaactaaccgctttcaatccccctattatctcatttattacacaatttttcatgattaacggtgtcgaatgcattttgtaaatctaacataatcattcctgtgaaaagtcctttggatgtgttatctctaatataatctataGA-CCTCTCG-AAAATAACAGCGAAGGGATACGG-ATCAGGTCGGCGGGTGCCTGTGGAGGTA----GATAAGATCA----TCCT-CTGCTGAGATC-GGTCCATCATGACCCCACCTGTGAAGACCTTAGTCCGATAATAAGTAGACCGGGCATTA
gi|7 : ACAAAAGGG---GAAG-TTAAC---TG--T-G-TCAAA------G-TAAT-CAT-AA--TCAAA---A-ACGTTGACAcc
gi|9 : ctttatgatgtcacagcaatgtaaaataatgaacgcaatgatacgaattacttggattctgtaagctgtcgattcctactcacgtAAAATTGAGGCCTAATGCAC-CTACTGAGCCTC-CA-A---CAAAATCGAAA-----TAT-A-AAGGT--------GGC-AAGGAAGGATTAAG--------A----TCCTGCTGCTGA---C-G---TACCA----CCCACC-GAA-AGCCATAAAT-CGAtacga
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GACAATTTGTATTGAAAAAAATAACTGTAACAAAACAAACTGTGATAATCTTGAATAAATAGAATTAAAAAGAAGGAGTCGGGCAAATATGGTCCCCCGGATAAACCAAGGTGCGGACCATGGCATAGAAATAAAAATAAACATTCCTCTTCGACTGTCTCACCCCACT
Unaligned ( gi|6 ): TTTCATAATTTTTGTACAGATACTAAATTAACGAATATGAAAAACATAGTTTCCAGGTCACACTAGTTGCGAGATAAGATGCATTAAAGAAGTAAGTATTCCTTGCTGATCAGCCAAACCCACCGCAAGCACCATTCCTGGATCA
Unaligned ( gi|8 ): TAAACGAACAAATACCAACGGATGATCAATCTTTCCAAGTCTAATAACAGAATAAAAAAAAAAAAAGAGTTGCAACAGAACCAACCCCATATATACCAGATGTGGGACTGGTCCAGGAAG
Unaligned ( gi|10 ): AATCAATGCCATAACTTATATATGGAATACAACATTAAGACTTAGGCAAACATGGATCTCCTGCATGGTATTGTAGGTGTACATGCAAGTATTTCCTGTCGACGGAGTCAAA
Unaligned ( gi|12 ): GAAAATAGTGAAACAACGATGCAATACCGTAAATCCTAACGGGGATTAAGAGCTGAGCAAACATAGGCCCCTGGA
Unaligned ( gi|14 ): TGGGCAAACATGGACCCATGGAAATACCCGAGGTCGGAGATCAGGCCTGGAGG
Unaligned ( gi|16 ): GCATATATAACAAACACTGATAAATCTCGTAAGCTCCAAACAGAAT