lowQualScore : 11111111111111111111111111 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777
lowQualScore : 2222222222222222222222 11111111 2222222222222222222 111111111111111111 1111 11111 1111111111 111111111111 3333333333333333333333333333333333 111 22222 666666666666666666666666666666666666666666666666666666666 22222 111111 11 00000000000000000000000000 2222 1 111 11 11 22222 2222 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 2 33 2 2 2 666666 2 2 33 33 2 7777777777777777777777 44444444 444 2 1111111111111111111 444 555555555555555555 77 77 0000 3 3 44 555 3 55555 3 8888888888 55 4 888888888888 8888888888888888888888888888888888 5 99 5 000 55555 2 5 5 333333333333333333333333333333333333333333333333333333333 3 0 00000 3 888888 3 6 33 2 6 33333333333333333333333333 3 0000 0 777 33 33 33333 1111 3 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666
lowQualScore : . .. . . . ...... . . .. .. . ...................... ........ ... . ................... ... .................. .. .. .... . . .. ... . ..... . .......... .. . ............ .................................. . .. . ... ..... . . . ......................................................... . . ..... . ...... . . .. . . .......................... . .... . ... .. .. ..... .... . ........................................................................................................................................................................................................................................................................................................................................................................................................................
lowQualScore : 4 22 4 4 4 888888 4 7 77 77 7 1111111111111111111111 33333333 777 7 1111111111111111111 777 333333333333333333 99 99 4444 3 3 66 888 3 00000 3 7777777777 55 0 777777777777 7777777777777777777777777777777777 0 22 7 000 77777 1 4 0 666666666666666666666666666666666666666666666666666666666 0 8 00000 2 000000 5 0 88 5 0 88888888888888888888888888 2 8888 0 555 88 88 88888 2222 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
consensus : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCAAT--T--TT-CTC-------------------C--AAAA--------CA---GATG-AGGGAGGGAGGCA----T-TT--T--T----T---TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGGGA-AA---------------AA-G--TTCTC-TAA---GTGAATC---ANAAGCANTGAAGATTTTCCTTTATT-----------TG------AG--------TC------------AT------------TTGAGGCCTGGTCATCTG-----GACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTACATAATTGTCTTGAACTGATTCA--TTTTGAACACAGGCAA--------------------------TATTGATT-ATTACA-TGTAT---AT--TGAT--TAG---G-TTC----TGATGAACTA-------ATG-TTA--TATTTAAAAAGTAAAGGTATTG------A--TGTAG--GGTA-CCT-T-A--AGAA-AAGGGTAC--TAGTACTAANCTGTCANNCAACACGTACCATTA-ATTTAA-ACT-GTTGGA-GGTTTTTATGAAGATTANNAATAATAGNGCGTNGTTGTGTTT-------CGAATAATCG-CTGAGGATCTAAT-GATAGG--TCTCATAAAATCA--AGATTTACATTGAGAA-TTCAATCTATTAATTTCAG--TCAGATTAAATATTGCT---AGTGTAC-CT-TAGTTGTTAGGAA-TCATGTAATAACATA---ACAAA--CAAGCCAATCATTTTA-TTTCTTTA--CG---TTTGAAT------CAGAA---ACT--GGGTTC---GGATACTTA
Reference ( gi|1 ) : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCAAT--T--TT-CTC-------------------C--AAAA--------CA---GATG-AGGGAGGGAGGCA--A-T-TT--T--T----T---TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGGGA-AA---------------AA-G--TTCTC-TAA---GTGAATA---AAAAACAATGAAGATTTTCCTTTATT-----------TG------AG--------TC------------AT------------TTGAAGCCTGGTCATCTG-----GACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGCCTTGAACTGATTCA--TTTTGAACACAAGCAA--------------------------TATTGATT-TTTACA-TGTAT---AT--TGAT--TAG---G-TTC----TGATGAACTACT--TTTATGTTTATTTATTTAAATGTTAAAGGTATTG------ATTTGTAG--GGTA-TCTATAA--AGAATAAGGGCTCCATAATATTAAA---TTAGTCAATATCTACC-TTATGTTTAATGCTCATTAAAGAGTTTTTGTTAAGATC-TTAATAAT--TACGTGGTT-TGTTTGATTACCTGAACAATGGAATAAGGATCTCATAGATAGGAAT-TCAT--AATCAATAGA-TTAGATTGAGAATTTCAATCTATTGATTTCAGATTCAGATTAAATTTTGCTGAGAGT-TACACTATAGCATTTAGAAGTTCATGTTATATAATAATTACAAAATCTAGCATAT-ATTTTATTTTCTTTATCTGTTTTTTGAATATAAACCAGTATTGACTAAGGGTTCAGGAGATACTTAATTT
gi|5 : AGGTCA-CACAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCAAT--T--TT-CTC-------------------C--AAAA--------CA---GATG-AGGGAGGGAGGCA--T-T-TT--A--C----T---TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------TA--TC-CAGAATTT--------G---TTAA-----------AAGAA-AA---------------AA-
gi|10 : taAGGCCATCA-AAAATT--AA-T-TA-TCTG------GTT-CTCAGG-CCAAT--A--TT-TTC------------------------AATTT-----TT---GATG-AGGGAGGGAGGCA--T-T-TT--T--T----T---TTTCCTTTTTAT------T---------G-C--CAA--TG---AAAAT-GA-CGA-GG--GAGG---C-T-----TTTTT-T-T--------aaaaacaaaaaaaaactttcaacatatatgttttccaagtgaatcgtaagcactgaagattttcctttatttgagtcatctacaatagaatttgaggcctggtcatctgggctggagactgcagaacacttgtgtaacaaatgcataattgtcttgaactgattcattttgaacacaggcaatattgaatatcacatgtatctgattaactataatttctaccggtactgatccatgttatttttttaatat
gi|11 : cacattaaccaatacacagcatacagtggacatgaatattcagttAGGCCA-CATAAAATA--AA-T-TG-TCTG------GTT-CTCGGG--AAAT--TGATT-TT-----------------------GAAA--------AA---G-TG--GGTAGGTAGGTAGGG-T-TT--TTAT----T---TTTTGTTTTTAT------T---------ttgaacaaatgattta
gi|21 : taAGGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-Ctcccgaagagcgagggtagggattgctattgaaagctagtgtatccaaaactaagatttcaagtaagacgttttaaaaaaaaaaataaa
gi|20 : tAGGCCA-AATAAAATT--AA-T-CA-TCTG------GTT-CTCAG
gi|9 : GGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCAAT--T--TT-CTC-------------------C--AAAA--------CA---GATG-AGGGAGGGAGGCA--ATT-TT--T--T----T---TTTCATTTTTAT------T---------G-G--CAA--TAATAAAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TTGG-----------GGGGA-AA---------------AA-G--TTCTC-TAA---GTGAAAC---AAAAGTAATGAAGATTTTCCTTTATT-----------TG------
gi|13 : GGCCA-TATAGTATT--AA-T-TC-TCTG------GTT-CTCAGG-CCAGT--T--TT--TA-------------------A--AAAA--------CA---AATG-AGGGAGGGAGGC----------------------------TTTTTAT------T---------T-G--CAG--T----GAAGTAGA--AA-GG--GAGG---C-A-----TTTTTAT-TTA------AA--TC-CCGAACTC--------A---TCAG-----------G
gi|17 : GGCCA-TGAAAAATT--AA-T-TA-TCTG------GTT-CTTGGG-CCATT--T--TT-TTC------------------------AA--------TATTTGACG-AGGGAGGTGGGTA--T-T-TT--T--C----C---TCTTGTTTTaaa
gi|16 : GGCCA-CATAAAATA--AA-T-TTGTCTG------GTT-CTCGGG-GAAAT--T--GA-TTT-------------------G--AAAA---------A---G-T--AGGTAGGG------------T--T--T----T---TTTAATTTaa
gi|7 : GCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-GTAAGG-CCAAT--T--TT-CTC-------------------C--AAAT--------CA---GATG-AGGGAGGGAGGCA--T-T-TT--A--T----T---TTTCATTTTTAT------T---------G-G--CAA--T----AAAATGGA-TGA-GA--GTGG---T-A-----TTTTT-TAA--------AA--TC-CAGAA-TT--------G---TCAA-----------AAAAA-AA---------------AA-cccaaagagtgagggtagggatt
gi|12 : CCA-CAATAAATT--AAGTGTC-TCTG-------TT-CTCAGG-CCAAT--T--TC-TTC-------------------C--AAAA--------CA---GATGAAGGGAGGGAGGCA--A-TGTT--T--T----T---TTTCATTTTTAT------T---------GTGGTCAAT-T----AAAATAGA-TGA-GG----AG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------accaacaaaaaaactttcaacataaatgctttctaagtggatcataagcactaaagattttcatttatttcgccttataatgtaaattagaatttgcctcatcggaaacctggatctgaggaagactggatagtgctaa
gi|6 : CCA-CATAAAATT--AA-T-TG-TTTG-----------TC-GG-CCAATATT--TT-TTT-------------------C--AA----------CA---GATG-AGGAAGGAGGTCT--A-T-TTAGA--T----T---TTTCATTTATAT------TACCAAAAACA-G--CAA--T----AAAATACA-TGA-GGGTGAGT---TGA-----GTTTT-T-T--------
gi|18 : cCCA-CATAAAATT--------C-TCTC------GTT-CTTATG-CCAAT--T--TT-CTT-------------------C--AAAA--------TA---GATG-AGGGAGGCAGGgggaaagaaaactttttaaaggttctaagtaggacgatgccaattcataatcactttcccatatcttgtggggagatcacccacgattcatatcgcacccataagatttgagccttgtggatcatcctcgaaccgaggactgcaaggagtctctgtaccataaataa
gi|14 : CA-TGTAAAATT--AA-T-TT-TC-G------GTT-CTCAGT-CCAAT--T--TT-CTC-------------------C--AAAA--------CA---GAT-----AAGGGAGGC-----T-TA--T--T----T---AATCATTTTTAT------C---------A-G--CAA--T-----AAATGGA-TGA-GG--GAGA---C-A-----TTTTT-TAA--------AA--TC-CCAAACTC--------A---TTGG-----------
gi|8 : CA-TATAAAATT--AA-T-TC-TCCG------GTT-TTCAGG-CCAAT--T--TT-CTCAACAATAACAACAAATTATT--AAAAAAAAAAACCA---GATG-AGGGAGGAAGGC----------------------------TTTTTA-------------------G--TAA--T----GAAATAGA-TAA-GG--GAGGAACT-A-----TTTTT-T-TTTATTTTAAA--TC-CAGAACTT--------G---CCAGATAACAATTTCAGAGATTA---------------AA-G--TTCTG-TAA---CTGAATC---TTAAACATAGTAGACTTTCCATTATC-----------TG------GG--------TC------------AT------------a
gi|4 : -CATAAAATT--AA-T-TC-TCTG------ATTTCTCGGG-CAAAT--T--TT-CTC-------------------C--AAAA--------CA---GATG-AGGGAAGGAGACA-------T--T--T----TAAATTTCATTTTCAT------T---------G-G--CAA--T----AAAATAGA-CGA-GG--AAGG---T-A-----TCTCT-T-T--------AA--TC-CAGAACTT--------G---TCGA-----------AAAAA-AACAACTTTAAATATAAAA-G--TTATC-AAA---GTGAACT---AAAATCACTGAAGATTTTCTTTTATT-----------TG------AG--------TC------------ATCTAAGATATAATTTAAGGCCTGATCATCTT-----GACTGGAGACTGCAGAAC---TGTGCAAA--------ATACATAATTGTCTTGAACTGATTCA--TTTT-AACACAGGCAA--------------------------TATTGA-T-ATTACA-TGTAT---AT--TGAT--TAA---GTTTC----AGATGAACTA----------------TAATTAAAAAGTAAATGTATTGAAAAACAAATATAG--AGTA-CCT---A--AGAA-AAGGGcaacaacagaatttaatgcttgtggactgcataattctgaatac
gi|3 : -CATAAAACTTAAA-T-TC-TCTGCACCCTGTT-CTCAGGGCCAAT--T--TTTCTC-------------------CCAAAAA--------CA---GATG-AGGGAGGGAGGCA--A-T-TT--T--T----T---TTGCATTTTTAT------T---------G-GC-CAA--T----AAAATAGA-TGA-GG--GAGG---T-A------TTTT-T-T--------AA--TC-CAGAACTTA-------G---TCGG-----------GGGGtaccgtttttattcaaactacat
gi|2 : cacGGAGGAAG-CA--A-T-TT--T--TGAATT---TTTCATTTTGGTGATGGGT---------G-G--CAAATT----AAAATAGAATGATGG--GAGG---T-AATTTTTTCTT-T-T--------AAGGTCTCAGAACTTCGCTGCACGAACCCGGAAGGGGC----GGGGA-AA---------------AATGACTTCTCGTAACCGGTGAA-ATCCAAAAGCAATGAAGATTTTCCTATATT-----------TG------AG--------TC------------AT------------TTGAGGCCTGGTCATCTG-----GACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCACGTTTTGAACACAGGCAACNNNNNNNNNNNNNNNNNNNNNNNNNTAT-GATTGTCTACACTGTAT---ATCGTGAT--TAGCGTG-TTCTGCTTGATGAACTA-------ATG-------ATTTAAAAAGTAAAGGTATTA---------TGTAAGCGGTACTCT-T----AGAACAAGG-------AGTACTAAACTGTTATTCAA-ACGTACCATTA-ATTTAA-ACT-GTTGGA----TTTTATGAAGATTATTAATAATAGTGCGTTG---TGTT--------TGAATAATCG---AAGGATCTAAT-GATAGG--TCTCAT--AATCA--AGATTTACA-TGAGAA-TTCAATCTATT-ATTTCAG--TCAAATTAAA-ATTGCT---AGTGTAC-CT-TAGTTGTTAGGAA-TCATGTAATAACATA---ACAAA--CAAGCCAATCATTTTA-TTTCTTTA--CG---TTTGAAT------CAGAA---ACT--GGGTTC---GGATACTTAgggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatattaagtgaatcaaaagcaatgaagattttcctttatttgagtcatttaaggcctggtcatctggactggagactgcagaacacttgtgtaaattgtacatgtatataattgtcttgaactgattcattttgaacacaggcaatattgattgttacatgtatattgattaggttctgatgaactatgattaaaaagtaaaggtattgatgtagggtaccttaattagaaaagggtactaatttaattcaaacaacattaatttaactttggtttttaaagatgaaataataatggttgtgtttcgaaaatctgaggatctatgataggttcataaaatcaagattacattgagattcaatctataatttcagtcagataaatgc
gi|7 : a-AA---------------AT-G--CTTTC-TAA---GTGGATC---ATAAGCACTAAAGATTTTCATTTATTTCGCCTTATAATGTAAATTAGAATTTGCCTC------------AT------------CGGAAACCTGG--ATCTGAGGAAGACTGGATAGTGCgct
gi|5 : gccacgtaaaattaattctctggttgtaaggccaattttctccaaatcagatgagggagggaggcattttatttttcatttttattggcaataaaatggatgagagtggtattttttaaaatccagaattgtcaaaaaaaaaaaaccaacaaaaaaactttcaacat-G--TTTTC-CAA---GTGAATC---GTAAGCACTGAAGATTTTCCTTTATT-----------TG------AG--------TCATCTACAATAGAAT------------TTGAGGCCTGGTCATCTG-----GGCTGGAGACTGCAGAACACTTGTGTA------ACAAATGCATAATTGTCTTGAACTGATTCA--TTTTGAACACAGGCAA--------------------------TATTGAAT-ATCACA-TGTATCTGAT--TAACTATAA---T-TTC----TACCGG--TACTGATCCATG-TTATTTTTTTAAtaa
gi|3 : taaggtcacacaaaattaattctctggttctcaggccaattttctccaaaacagatgagggagggaggcattttacttttcatttttattggcaataaaatagatgagggaggtatttttttttatccagaatttgttaaaagaaaaaaaaaaacaaaaaaaaactttcaacatatat-TAA---GTGAATC---AAAAGCAATGAAGATTTTCCTTTATT-----------TG------AG--------TC------------AT------------TTAAGGCCTGGTCATCTG-----GACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTGAACACAGGCAA--------------------------TATTGATT-GTTACA-TGTAT---AT--TGAT--TAG---G-TTC----TGATGAACTA--------TGATTA-------AAAAGT-AAAGGTATTG------A--TGTAG--GGTA-CCT-TAATTAGAA-AAGGGTAC--TAAT-TTAAT---TCAAACAACAT-TA-------ATTTAA--CT--TT----GGTTTTTA--AAGAT--GAAATAAT--AA--TGGTTGTGTTT-------CGAA-AAT---CTGAGGATCT-AT-GATAGG--T-TCATAAAATCA--AGA-TTACATTGAGA--TTCAATCTA-TAATTTCAG--TCAGA-TAAATtat
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AGATAAAACAGAGAAAAATCACTGTAATCTTAAGAATACTAAGGACTTCTGATTGTTAGTATTATTATAAAAATTTAAGCTAGTGGACAGCGTCCATCTG
Unaligned ( gi|19 ): TTACCTTAAAATAATAGTTTACAAGCATAAGTAT
Alignments
lowQualScore : 2222222222222222222222222222 22222222222222222 1111111111111111 11111 1111111111 11111111 5555555555555555555555555555555555555555555555 1111 111111 11111 666666666666 11 333333333 5555555555555555 11 111 1 2222 7777777777777777 111 1 444444444444 11 1 22222222 1 111111 3333 3333 1 1 444444444 11 2222 33333333 55555555 1 4444 1 1 3333 111 11 2 1 11 11 333 1 2222 2 333 22 1 2 5555555 55555555555555 22 333
lowQualScore : 2 33 2 2 2 666666 2 2 33 33 2 77777 2 8888888888888888888888888888 444 2 00000000000000000 2 3333333333333333 3 77 77 9999 3 3 44 555 3 33333 3 6666666666 55 3 66666666 666 8888888888888888888888888888888888888888888888 5 77 5555 888 444444 99999 1 1 888888888888 0 888888 1 11 222222222 3333333333333333 6 2 8 8 0 11 777 0 1111 1111111111111111 777 0 333333333333 33 0 22222222 0 666666 0 88 8888 0 22 8888 7 3 7 3 222222222 44 9999 00000000 6 55555555 2 1111 0 5 3 2222 333 88 3 7 7 3 7 7 88 7 11 555 5 1111 66 0 4 66 555 77 4 66 5 0 0000000 88888888888888 77 555
lowQualScore : . .. . . . ...... . . .. .. . ..... . ............................ ... . ................. . ................ . .. .. .... . . .. ... . ..... . .......... .. . ........ ... .............................................. . .. .... ... ...... ..... . . ............ . ...... . .. ......... ................ . . . . . .. ... . .... ................ ... . ............ .. . ........ . ...... . .. .... . .. .... . . . . ......... .. .... ........ . ........ . .... . . . .... ... .. . . . . . . .. . .. ... . .... .. . . .. ... .. . .. . . ....... .............. .. ...
lowQualScore : 2 11 2 2 2 444444 2 5 44 44 5 88888 5 1111111111111111111111111111 444 5 11111111111111111 5 4444444444444444 1 33 33 6666 1 1 22 444 1 88888 1 5555555555 00 6 88888888 444 0000000000000000000000000000000000000000000000 0 99 6666 888 444444 44444 0 0 333333333333 8 222222 0 00 000000000 0000000000000000 0 2 0 0 8 00 555 0 2222 2222222222222222 555 0 555555555555 88 0 88888888 0 888888 7 00 0000 7 00 0000 3 3 3 3 000000000 00 7777 00000000 7 33333333 3 7777 7 3 3 7777 777 33 7 3 3 3 3 3 33 3 33 000 0 0000 55 0 0 55 000 55 0 55 0 0 5555555 55555555555555 55 000
consensus : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATG-TATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGGGTAC--TAATATTAAA---TTANTCAA-AC-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTAT-AAGATC-TTAATAATAGTGCGT-GTTGTGTTT-------CGAACAAT-G--TAAGGATCT-AT-GATAGG--T-TCATAAAATCA--AGA-TTACATTGAGAA-TTCAATCTATTAATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
Reference ( family-2 ) : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCANAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTACATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTAT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGGGTAC--TAGTACTAANCTGTCANNCAACACGTACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTATGAAGATTANNAATAATAGNGCGTNGTTGTGTTT-------CGAATAATCG-CTGAGGATCTAAT-GATAGG--TCTCATAAAATCA--AGATTTACATTGAGAA-TTCAATCTATTAATTTCAG--TCAGATTAAATATTGCT---AGTGTAC-CT-TAGTTGTTAGGAA-TCATGTAATAACATA---ACAAA--CAAGCCAATCATTTTA-TTTCTTTA--CG---TTTGAAT------CAGAA---ACT--GGGTTC---GGATACTTA
gi|1 : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AA-T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TAAAAAACAATGAAGATTTTCCTTTATTTGAGTCAT------------TTGAAGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGCCTTGAACTGATTCA--TTTTG---------AACACAAGCAATAT----------------TGATTTT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTACTTTTATGTT-TATTTATTTAAATGTTAAAGGTATTG--------ATTTGTAGG--GTAT-CTATAA---AGAATAAGGGCTCCATAATATTAAA---TTAGTCAATATCTACC-TTATGTTTAATGCTCATTAAAGAGTTTTTGTTAAGATC-TTAATAAT--TACGTGGTT-TGTTTGATTACCTGAACAATGGAATAAGGATCTCATAGATAGGAAT-TCAT--AATCAATAGA-TTAGATTGAGAATTTCAATCTATTGATTTCAGATTCAGATTAAATTTTGCTGAGAGT-TACACTATAGCATTTAGAAGTTCATGTTATATAATAATTACAAAATCTAGCATAT-ATTTTATTTTCTTTATCTGTTTTTTGAATATAAACCAGTATTGACTAAGGGTTCAGGAGATACTTA
gi|10 : AGGCCATCA-AAAATT--AA-T-TA-TCTG------GTT-CTCAGG-CCA--ATA--TT-TTC--------AATTTT------------------------T---GATG-AGGGAGGGAGGC-AT-T-TTT---T----T-TTTCCTTTTTAT------T---------G-C--CAA--TG---AAAAT-GA-CGA-GG--GAGG---C-T-----TTTTT-T-T--------attt
gi|11 : cacattaaccaatacacagcatacagtggacatgaatattcagttAGGCCA-CATAAAATA--AA-T-TG-TCTG------GTT-CTCGGG--AA--ATTGATT-TTG--A--AA-AAG--T------------------------G---GGT--AGGTAGGTAGGG-T--T-TTTA--T----T-TTTTGTTTTTAT------T---------ttgaacaaatgattta
gi|12 : taCCA-CAATAAATT--AAGTGTC-TCTG-------TT-CTCAGG-CCA--ATT--TC-TTC--C--AA-AA---C------------------------A---GATGAAGGGAGGGAGGCAA--TGTTT---T----T-TTTCATTTTTAT------T---------GTGGTCAAT-T----AAAATAGA-TGA-GG----AG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------tcccgaagagcgagggtagggattgctattgaaagctagtgtatccaaaactaagatttcaagtaagacgttttaaaaaaaaaaataaa
gi|13 : GGCCA-TATAGTATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--GTT--TT--TA--A--AA-AA---C------------------------A---AATG-AGGGAGGGAGGC------------------------TTTTTAT------T---------T-G--CAG--T----GAAGTAGA--AA-GG--GAGG---C-A-----TTTTTAT-TTA------AA--TC-CCGAACTC--------A---TCAG-----------G
gi|14 : CA-TGTAAAATT--AA-T-TT-TC-G------GTT-CTCAGT-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GAT-----AAGGGAGGC----T-TAT---T----T-AATCATTTTTAT------C---------A-G--CAA--T-----AAATGGA-TGA-GG--GAGA---C-A-----TTTTT-TAA--------AA--TC-CCAAACTC--------A---TTGG-----------aaa
gi|16 : GGCCA-CATAAAATA--AA-T-TTGTCTG------GTT-CTCGGG-GAA--ATT--GA-TTT--G--AA-AA----------------------------A---G-T--AGGTAGGG-----------TT---T----T-TTTAATTTa
gi|17 : GGCCA-TGAAAAATT--AA-T-TA-TCTG------GTT-CTTGGG-CCA--TTT--TT-TTC--------AA---T------------------------ATTTGACG-AGGGAGGTGGGT-A--T-TTT---TC---C-TCTTGTTTTcccaaagagtgagggtagggatt
gi|18 : CCA-CATAAAATT--------C-TCTC------GTT-CTTATG-CCA--ATT--TT-CTT--C--AA-AA---T------------------------A---GATG-AGGGAGGCAGGaa
gi|2 : GGAGGAAGCA-A--T-TTT---TGAATT-TTTCATTTTGGTGATGGGT---------G-G--CAAATT----AAAATAGAATGATGG--GAGG---T-AATTTTTTCTT-T-T--------AAGGTCTCAGAACTTCGCTGCACGAACCCGGAAGGGGC----GGG------------GA-AA---------------AATGACTTCTCG---TAACCGGTG------AAAT---CCAAAAGCAATGAAGATTTTCCTATATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCACGTTTTGAACACAGGCAACNNNNNNNNNNNNNNNNNNNNNNNNNTATGATTGTCTACACTGTATATCGTGATTAGCGTG-TTCTGCTTGATGAACTA-----ATG----ATTTA---AAAAG-TAAAGGTATT---------A--TGTAAGCGGTACTCT-T-A---GAAC-AAGG-------AGTACTAAACTGTTATTCAA-ACGTACCATTA-ATTTAA-ACT-GTTGGA----TTTTATGAAGATTATTAATAATAGTGCGT---TGTGTTT--------GAATAATCG---AAGGATCTAAT-GATAGG--TCTCATAA--TCA--AGATTTACAT-GAGAA-TTCAATCTATTA-TTTCAG--TCAAATTAAA-ATTGCT---AGTGTAC-CT-TAGTTGTTAGGAA-TCATGTAATAACATA---ACAAA--CAAGCCAATCATTTTA-TTTCTTTA--CG---TTTGAAT------CAGAA---ACT--GGGTTC---GGATACTTA
gi|20 : aAGGCCA-AATAAAATT--AA-T-CA-TCTG------GTT-CTCAGgct
gi|21 : AGGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-C
gi|3 : t-CATAAAACTTAAA-T-TC-TCTGCACCCTGTT-CTCAGGGCCA--ATT--TTTCTC--CCAAA-AA---C------------------------A---GATG-AGGGAGGGAGGCAA--T-TTT---T----T-TTGCATTTTTAT------T---------G-GC-CAA--T----AAAATAGA-TGA-GG--GAGG---T-A------TTTT-T-T--------AA--TC-CAGAACTTA-------G---TCGG-----------GGG------------G
gi|3 : cac----TAA---GTG------AA-----TCAAAAGCAATGAAGATTTTCCTTTATTTGAGTCAT------------TTAAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACT------ATG--A---TTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-AATTAGAA-AAGGGTAC--TAAT-TTAAT---TCAAACAA-------CATTA-ATTT-A-ACT--TT---G-GTTTTTA--AAGAT--GAAATAATAATG----GTTGTGTTT-------CGAA-AAT---CTGAGGATCT-AT-GATAGG--T-TCATAAAATCA--AGA-TTACATTGAG-A-TTCAATCTA-TAATTTCAG--TCAGA-TAAATgggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatattaagtgaatcaaaagcaatgaagattttcctttatttgagtcatttaaggcctggtcatctggactggagactgcagaacacttgtgtaaattgtacatgtatataattgtcttgaactgattcattttgaacacaggcaatattgattgttacatgtatattgattaggttctgatgaactatgattaaaaagtaaaggtattgatgtagggtaccttaattagaaaagggtactaatttaattcaaacaacattaatttaactttggtttttaaagatgaaataataatggttgtgtttcgaaaatctgaggatctatgataggttcataaaatcaagattacattgagattcaatctataatttcagtcagataaatgc
gi|4 : caccataaaacttaaattctctgcaccctgttctcagggccaatttttctcccaaaaacagatgagggagggaggcaattttttttgcatttttattggccaataaaatagatgagggaggtattttttaatccagaacttagtcgggggggggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatat-CATAAAATT--AA-T-TC-TCTG------ATTTCTCGGG-CAA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAAGGAGAC-A--T-TTT---A----AATTTCATTTTCAT------T---------G-G--CAA--T----AAAATAGA-CGA-GG--AAGG---T-A-----TCTCT-T-T--------AA--TC-CAGAACTT--------G---TCGA-----------AAA------------AA-AACAACTTTAAATATAAAA-G--TTATC----AAA---GTG------AA-----CTAAAATCACTGAAGATTTTCTTTTATTTGAGTCATCTAAGATATAATTTAAGGCCTGATCATCTTGACTGGAGACTGCAGAAC---TGTGCAAA--------ATACATAATTGTCTTGAACTGATTCA--TTTT----------AACACAGGCAATAT----------------TGA-TAT-TACA-TGTATAT--TGATTAA---GTTTCAG----ATGAAC-----------TATAATTA---AAAAG-TAAATGTATTGAAAAACAAA--TATAGA--GTAC-C--T-A---AGAA-AAGGGTAC--gc
gi|5 : AGGTCA-CACAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--C----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------TA--TC-CAGAATTT--------G---TTAA-----------AAG------------AA-AA---------------AA-cgtttttattcaaactacat
gi|5 : ta-G--TTTTC----CAA---GTG------AA-----TCGTAAGCACTGAAGATTTTCCTTTATTTGAGTCATCTACAATAGAATTTGAGGCCTGGTCATCTGGGCTGGAGACTGCAGAACACTTGTGTAA------CAAATGCATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGAATAT-CACA-TGTAT-C--TGATTAaaaaacaaaaaaaaactttcaacatatatgttttccaagtgaatcgtaagcactgaagattttcctttatttgagtcatctacaatagaatttgaggcctggtcatctgggctggagactgcagaacacttgtgtaacaaatgcataattgtcttgaactgattcattttgaacacaggcaatattgaatatcacatgtatctgattaactataatttctaccggtactgatccatgttatttttttaatat
gi|6 : taaggtcacacaaaattaattctctggttctcaggccaattttctccaaaacagatgagggagggaggcattttacttttcatttttattggcaataaaatagatgagggaggtatttttttttatccagaatttgttaaaagaaaaaaaaaaacaaaaaaaaactttcaacatatatCCA-CATAAAATT--AA-T-TG-TTTG--------T-C---GG-CCAATATT--TT-TTT--C-----AA---C------------------------A---GATG-A-GGAAGGAGGT-C--TATTTAGAT----T-TTTCATTTATAT------TACCAAAAACA-G--CAA--T----AAAATACA-TGA-GGGTGAGT---TGA-----GTTTT-T-T--------actataatttctaccggtactgatccatgttatttttttaatat
gi|7 : cGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-GTAAGG-CCA--ATT--TT-CTC--C--AA-AT---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATGGA-TGA-GA--GTGG---T-A-----TTTTT-TAA--------AA--TC-CAGAA-TT--------G---TCAA-----------AAAAAAAAAACCAACAA-AA---------------AA-A--CTTTCAACATAA---ATGCTTTCTAAGTGGATCATAAGCACTAAAGATTTTCATTTATTTgggaaagaaaactttttaaaggttctaagtaggacgatgccaattcataatcactttcccatatcttgtggggagatcacccacgattcatatcgcacccataagatttgagccttgtggatcatcctcgaaccgaggactgcaaggagtctctgtaccataaataa
gi|8 : CA-TATAAAATT--AA-T-TC-TCCG------GTT-TTCAGG-CCA--ATT--TT-CTCAAC--AATAA---CAACAAATTATTAAAAAAAAAAACCA---GATG-AGGGAGGAAGGC------------------------TTTTTA-------------------G--TAA--T----GAAATAGA-TAA-GG--GAGGAACT-A-----TTTTT-T-TTTATTTTAAA--TC-CAGAACTT--------G---CCAGATAACAATTTCAGA------------GATTA---------------AA-G--TTCTG----TAA---CTG------AA-----TCTTAAACATAGTAGACTTTCCATTATCTGGGTCAT------------cgccttataatgtaaattagaatttgcctcatcggaaacctggatctgaggaagactggatagtgctaa
gi|9 : GGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AATT-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--TAATAAAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TTGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----ACAAAAGTAATGAAGATTTTCCTTTATTTGcaacaacagaatttaatgcttgtggactgcataattctgaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGATAAAACAGAGAAAAATCACTGTAATCTTAAGAATACTAAGGACTTCTGATTGTTAGTATTATTATAAAAATTTAAGCTAGTGGACAGCGTCCATCTG
Unaligned ( gi|19 ): TTACCTTAAAATAATAGTTTACAAGCATAAGTAT
Alignments
lowQualScore : 2222222222222222222222222222 22222222222222222 1111111111111111 11111 1111111111 11111111 5555555555555555555555555555555555555555555555 1111 111111 11111 666666666666 11 333333333 5555555555555555 11 111 1 2222 555555555555555 111 1 444444444444 11 1 22222222 1 1 444444444444 111111 1 1 444444444 333 22 11 11111 55555555 1 3333 22222 2222 111 11 1 1 1 11 222 1 1 1 1 222 11 1 1 2222222 333333 222 11 222
lowQualScore : 2 33 2 2 2 666666 2 2 33 33 2 77777 2 8888888888888888888888888888 444 2 00000000000000000 2 3333333333333333 3 77 77 9999 3 3 44 555 3 33333 3 6666666666 55 3 66666666 666 8888888888888888888888888888888888888888888888 5 77 5555 888 444444 99999 0 1 888888888888 0 888888 1 11 222222222 3333333333333333 6 1 8 8 0 11 777 0 1111 666666666666666 777 0 333333333333 33 0 22222222 0 0 888888888888 1 444444 7 3 7 3 222222222 444 55 11 77777 55555555 2 0000 22222 2222 333 88 3 7 7 3 7 2 88 7 88 000 5 5 5 22 5 1 22 111 88 1 22 5 5 7777777 000000 1 111 88 000
lowQualScore : . .. . . . ...... . . .. .. . ..... . ............................ ... . ................. . ................ . .. .. .... . . .. ... . ..... . .......... .. . ........ ... .............................................. . .. .... ... ...... ..... . . ............ . ...... . .. ......... ................ . . . . . .. ... . .... ............... ... . ............ .. . ........ . . ............ . ...... . . . . ......... ... .. .. ..... ........ . .... ..... .... ... .. . . . . . . .. . .. ... . . . .. . . .. ... .. . .. . . ....... ...... . ... .. ...
lowQualScore : 2 11 2 2 2 444444 2 5 44 44 5 88888 5 1111111111111111111111111111 444 5 11111111111111111 5 4444444444444444 1 33 33 6666 1 1 22 444 1 88888 1 5555555555 00 6 88888888 444 0000000000000000000000000000000000000000000000 0 99 6666 888 444444 44444 8 0 333333333333 8 222222 0 00 000000000 0000000000000000 0 4 0 0 8 00 555 0 2222 555555555555555 555 0 555555555555 88 0 88888888 0 0 555555555555 0 222222 3 3 3 3 000000000 000 33 00 77777 33333333 0 0000 00000 7777 777 33 3 3 3 3 3 3 33 3 33 555 0 5 5 00 5 0 00 555 55 0 00 0 5 5555555 000000 0 000 55 555
consensus : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATTA--TTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTG-TGTGTTT-------CGAACAATC---TAAGGATCT-A-T-GATAGG--T-TCATAAAATCA--AGATT-ACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
Reference ( family-2 ) : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATTAAATTANTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTGTTGTGTTT-------CGAACAATG---TAAGGATCT-A-T-GATAGG--T-TCATAAAATCA--AGATT-ACATTGAGAA-TTCAATCTATTAATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
gi|1 : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AA-T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TAAAAAACAATGAAGATTTTCCTTTATTTGAGTCAT------------TTGAAGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGCCTTGAACTGATTCA--TTTTG---------AACACAAGCAATAT----------------TGATTTT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTACTTTTATGTTTATTTATTTAAATGTTAAAGGTATTG--------ATTTGTAGG--GTAT-CTATAA---AGAATAAGG-GCTCCATAATATTAAATTAGTCAATATC-TACC-TTATGTTTAATGCTCATTAAAGAGTTTTTGTT-AAGATC-TTAATAAT--TACGTGGTTTGTTTGATTACCTGAACAATGGAATAAGGATCTCA-TAGATAGGAAT-TCAT--AATCAATAGATT-AGATTGAGAATTTCAATCTATTGATTTCAGATTCAGATTAAATTTTGCTGAGAGT-TACACTATAGCATTTAGAAGTTCATGTTATATAATAATTACAAAATCTAGCATAT-ATTTTATTTTCTTTATCTGTTTTTTGAATATAAACCAGTATTGACTAAGGGTTCAGGAGATACTTA
gi|10 : AGGCCATCA-AAAATT--AA-T-TA-TCTG------GTT-CTCAGG-CCA--ATA--TT-TTC--------AATTTT------------------------T---GATG-AGGGAGGGAGGC-AT-T-TTT---T----T-TTTCCTTTTTAT------T---------G-C--CAA--TG---AAAAT-GA-CGA-GG--GAGG---C-T-----TTTTT-T-T--------attt
gi|11 : cacattaaccaatacacagcatacagtggacatgaatattcagttAGGCCA-CATAAAATA--AA-T-TG-TCTG------GTT-CTCGGG--AA--ATTGATT-TTG--A--AA-AAG--T------------------------G---GGT--AGGTAGGTAGGG-T--T-TTTA--T----T-TTTTGTTTTTAT------T---------ttgaacaaatgattta
gi|12 : taCCA-CAATAAATT--AAGTGTC-TCTG-------TT-CTCAGG-CCA--ATT--TC-TTC--C--AA-AA---C------------------------A---GATGAAGGGAGGGAGGCAA--TGTTT---T----T-TTTCATTTTTAT------T---------GTGGTCAAT-T----AAAATAGA-TGA-GG----AG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------tcccgaagagcgagggtagggattgctattgaaagctagtgtatccaaaactaagatttcaagtaagacgttttaaaaaaaaaaataaa
gi|13 : GGCCA-TATAGTATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--GTT--TT--TA--A--AA-AA---C------------------------A---AATG-AGGGAGGGAGGC------------------------TTTTTAT------T---------T-G--CAG--T----GAAGTAGA--AA-GG--GAGG---C-A-----TTTTTAT-TTA------AA--TC-CCGAACTC--------A---TCAG-----------G
gi|14 : CA-TGTAAAATT--AA-T-TT-TC-G------GTT-CTCAGT-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GAT-----AAGGGAGGC----T-TAT---T----T-AATCATTTTTAT------C---------A-G--CAA--T-----AAATGGA-TGA-GG--GAGA---C-A-----TTTTT-TAA--------AA--TC-CCAAACTC--------A---TTGG-----------aaa
gi|16 : GGCCA-CATAAAATA--AA-T-TTGTCTG------GTT-CTCGGG-GAA--ATT--GA-TTT--G--AA-AA----------------------------A---G-T--AGGTAGGG-----------TT---T----T-TTTAATTTa
gi|17 : GGCCA-TGAAAAATT--AA-T-TA-TCTG------GTT-CTTGGG-CCA--TTT--TT-TTC--------AA---T------------------------ATTTGACG-AGGGAGGTGGGT-A--T-TTT---TC---C-TCTTGTTTTcccaaagagtgagggtagggatt
gi|18 : CCA-CATAAAATT--------C-TCTC------GTT-CTTATG-CCA--ATT--TT-CTT--C--AA-AA---T------------------------A---GATG-AGGGAGGCAGGaa
gi|2 : GGAGGAAGCA-A--T-TTT---TGAATT-TTTCATTTTGGTGATGGGT---------G-G--CAAATT----AAAATAGAATGATGG--GAGG---T-AATTTTTTCTT-T-T--------AAGGTCTCAGAACTTCGCTGCACGAACCCGGAAGGGGC----GGG------------GA-AA---------------AATGACTTCTCG---TAACCGGTG------AAAT---CCAAAAGCAATGAAGATTTTCCTATATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCACGTTTTGAACACAGGCAACNNNNNNNNNNNNNNNNNNNNNNNNNTATGATTGTCTACACTGTATATCGTGATTAGCGTG-TTCTGCTTGATGAACTA-----ATG---ATTTA---AAAAG-TAAAGGTATT---------A--TGTAAGCGGTACTCT-T-A---GAAC-AAGGAGTAC--TAA-ACTG--TTATTCAA-A-CGTACCATTA-ATTTAA-ACT-GTTGGA----TTTTA-TGAAGATTATTAATAATAGTGCGT--TGTGTTT--------GAATAATC---GAAGGATCT-AAT-GATAGG--TCTCATAA--TCA--AGATTTACAT-GAGAA-TTCAATCTATT-ATTTCAG--TCAAATTAAA-ATTGCT---AGTGTAC-CT-TAGTTGTTAGGAA-TCATGTAATAACATA---ACAAA--CAAGCCAATCATTTTA-TTTCTTTA--CG---TTTGAAT------CAGAA---ACT--GGGTTC---GGATACTTA
gi|20 : aAGGCCA-AATAAAATT--AA-T-CA-TCTG------GTT-CTCAGgct
gi|21 : AGGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-C
gi|3 : t-CATAAAACTTAAA-T-TC-TCTGCACCCTGTT-CTCAGGGCCA--ATT--TTTCTC--CCAAA-AA---C------------------------A---GATG-AGGGAGGGAGGCAA--T-TTT---T----T-TTGCATTTTTAT------T---------G-GC-CAA--T----AAAATAGA-TGA-GG--GAGG---T-A------TTTT-T-T--------AA--TC-CAGAACTTA-------G---TCGG-----------GGG------------G
gi|3 : cac----TAA---GTG------AA-----TCAAAAGCAATGAAGATTTTCCTTTATTTGAGTCAT------------TTAAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACT------ATG-A---TTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-AATTAGAA-AAGG-GTAC--TAAT-TTA----ATTCAA-A-C--AACATTA-ATTT-A-ACT--TT---G-GTTTTTA---AAGAT--GAAATAATAATG---GTTGTGTTT-------CGAA-AATC---TGAGGATCT-A-T-GATAGG--T-TCATAAAATCA--AGATT-ACATTGAG-A-TTCAATCTA-TAATTTCAG--TCAGA-TAAATgggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatattaagtgaatcaaaagcaatgaagattttcctttatttgagtcatttaaggcctggtcatctggactggagactgcagaacacttgtgtaaattgtacatgtatataattgtcttgaactgattcattttgaacacaggcaatattgattgttacatgtatattgattaggttctgatgaactatgattaaaaagtaaaggtattgatgtagggtaccttaattagaaaagggtactaatttaattcaaacaacattaatttaactttggtttttaaagatgaaataataatggttgtgtttcgaaaatctgaggatctatgataggttcataaaatcaagattacattgagattcaatctataatttcagtcagataaatgc
gi|4 : caccataaaacttaaattctctgcaccctgttctcagggccaatttttctcccaaaaacagatgagggagggaggcaattttttttgcatttttattggccaataaaatagatgagggaggtattttttaatccagaacttagtcgggggggggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatat-CATAAAATT--AA-T-TC-TCTG------ATTTCTCGGG-CAA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAAGGAGAC-A--T-TTT---A----AATTTCATTTTCAT------T---------G-G--CAA--T----AAAATAGA-CGA-GG--AAGG---T-A-----TCTCT-T-T--------AA--TC-CAGAACTT--------G---TCGA-----------AAA------------AA-AACAACTTTAAATATAAAA-G--TTATC----AAA---GTG------AA-----CTAAAATCACTGAAGATTTTCTTTTATTTGAGTCATCTAAGATATAATTTAAGGCCTGATCATCTTGACTGGAGACTGCAGAAC---TGTGCAAA--------ATACATAATTGTCTTGAACTGATTCA--TTTT----------AACACAGGCAATAT----------------TGA-TAT-TACA-TGTATAT--TGATTAA---GTTTCAG----ATGAAC----------TATAATTA---AAAAG-TAAATGTATTGAAAAACAAA--TATAGA--GTAC-C--T-A---AGAA-AAGG-GTAC--C-GT-TT---TTATTCAA-A-C-TACgc
gi|5 : AGGTCA-CACAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--C----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------TA--TC-CAGAATTT--------G---TTAA-----------AAG------------AA-AA---------------AA-at
gi|5 : ta-G--TTTTC----CAA---GTG------AA-----TCGTAAGCACTGAAGATTTTCCTTTATTTGAGTCATCTACAATAGAATTTGAGGCCTGGTCATCTGGGCTGGAGACTGCAGAACACTTGTGTAA------CAAATGCATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGAATAT-CACA-TGTAT-C--TGATTAaaaaacaaaaaaaaactttcaacatatatgttttccaagtgaatcgtaagcactgaagattttcctttatttgagtcatctacaatagaatttgaggcctggtcatctgggctggagactgcagaacacttgtgtaacaaatgcataattgtcttgaactgattcattttgaacacaggcaatattgaatatcacatgtatctgattaactataatttctaccggtactgatccatgttatttttttaatat
gi|6 : taaggtcacacaaaattaattctctggttctcaggccaattttctccaaaacagatgagggagggaggcattttacttttcatttttattggcaataaaatagatgagggaggtatttttttttatccagaatttgttaaaagaaaaaaaaaaacaaaaaaaaactttcaacatatatCCA-CATAAAATT--AA-T-TG-TTTG--------T-C---GG-CCAATATT--TT-TTT--C-----AA---C------------------------A---GATG-A-GGAAGGAGGT-C--TATTTAGAT----T-TTTCATTTATAT------TACCAAAAACA-G--CAA--T----AAAATACA-TGA-GGGTGAGT---TGA-----GTTTT-T-T--------actataatttctaccggtactgatccatgttatttttttaatat
gi|7 : cGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-GTAAGG-CCA--ATT--TT-CTC--C--AA-AT---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATGGA-TGA-GA--GTGG---T-A-----TTTTT-TAA--------AA--TC-CAGAA-TT--------G---TCAA-----------AAAAAAAAAACCAACAA-AA---------------AA-A--CTTTCAACATAA---ATGCTTTCTAAGTGGATCATAAGCACTAAAGATTTTCATTTATTTgggaaagaaaactttttaaaggttctaagtaggacgatgccaattcataatcactttcccatatcttgtggggagatcacccacgattcatatcgcacccataagatttgagccttgtggatcatcctcgaaccgaggactgcaaggagtctctgtaccataaataa
gi|8 : CA-TATAAAATT--AA-T-TC-TCCG------GTT-TTCAGG-CCA--ATT--TT-CTCAAC--AATAA---CAACAAATTATTAAAAAAAAAAACCA---GATG-AGGGAGGAAGGC------------------------TTTTTA-------------------G--TAA--T----GAAATAGA-TAA-GG--GAGGAACT-A-----TTTTT-T-TTTATTTTAAA--TC-CAGAACTT--------G---CCAGATAACAATTTCAGA------------GATTA---------------AA-G--TTCTG----TAA---CTG------AA-----TCTTAAACATAGTAGACTTTCCATTATCTGGGTCAT------------cgccttataatgtaaattagaatttgcctcatcggaaacctggatctgaggaagactggatagtgctaa
gi|9 : GGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AATT-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--TAATAAAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TTGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----ACAAAAGTAATGAAGATTTTCCTTTATTTGcaacaacagaatttaatgcttgtggactgcataattctgaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGATAAAACAGAGAAAAATCACTGTAATCTTAAGAATACTAAGGACTTCTGATTGTTAGTATTATTATAAAAATTTAAGCTAGTGGACAGCGTCCATCTG
Unaligned ( gi|19 ): TTACCTTAAAATAATAGTTTACAAGCATAAGTAT
Alignments
lowQualScore : 2222222222222222222222222222 22222222222222222 1111111111111111 11111 1111111111 11111111 5555555555555555555555555555555555555555555555 1111 111111 11111 666666666666 11 333333333 5555555555555555 11 111 1 2222 555555555555555 111 1 444444444444 11 1 22222222 1 1 2222222222222 111111 1 1 444444444 333 22 11 33 55555555 1 222 2 1 2222 33 11 1 1 1 11 222 1 1 1 1 222 11 1 1 2222222 333333 222 11 222
lowQualScore : 2 33 2 2 2 666666 2 2 33 33 2 77777 2 8888888888888888888888888888 444 2 00000000000000000 2 3333333333333333 3 77 77 9999 3 3 44 555 3 33333 3 6666666666 55 3 66666666 666 8888888888888888888888888888888888888888888888 5 77 5555 888 444444 99999 0 1 888888888888 0 888888 1 11 222222222 3333333333333333 6 1 8 8 0 11 777 0 1111 666666666666666 777 0 333333333333 33 0 22222222 0 0 9999999999999 444444 7 3 7 3 222222222 444 55 11 6 66 55555555 2 333 6 3 2222 00 88 3 7 7 3 7 2 88 7 88 000 5 5 5 22 5 1 22 111 88 1 22 5 5 7777777 000000 1 111 88 000
lowQualScore : . .. . . . ...... . . .. .. . ..... . ............................ ... . ................. . ................ . .. .. .... . . .. ... . ..... . .......... .. . ........ ... .............................................. . .. .... ... ...... ..... . . ............ . ...... . .. ......... ................ . . . . . .. ... . .... ............... ... . ............ .. . ........ . . ............. ...... . . . . ......... ... .. .. . .. ........ . ... . . .... .. .. . . . . . . .. . .. ... . . . .. . . .. ... .. . .. . . ....... ...... . ... .. ...
lowQualScore : 2 11 2 2 2 444444 2 5 44 44 5 88888 5 1111111111111111111111111111 444 5 11111111111111111 5 4444444444444444 1 33 33 6666 1 1 22 444 1 88888 1 5555555555 00 6 88888888 444 0000000000000000000000000000000000000000000000 0 99 6666 888 444444 44444 8 0 333333333333 8 222222 0 00 000000000 0000000000000000 0 4 0 0 8 00 555 0 2222 555555555555555 555 0 555555555555 88 0 88888888 0 0 0000000000000 222222 3 3 3 3 000000000 000 33 00 7 77 33333333 0 333 7 3 7777 77 33 3 3 3 3 3 0 33 3 33 555 0 5 5 00 5 0 00 555 55 0 00 0 5 5555555 000000 0 000 55 555
consensus : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAG--GGTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGT--TGTGTTT-------CGAACAAT---CTAAGGATCT-AT-GATAGG--T-TCAT--AATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
Reference ( family-2 ) : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAG--GGTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGT-GTGTGTTT-------CGAACAAT---CTAAGGATCT-AT-GATAGG--T-TCATAAAATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
gi|1 : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AA-T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TAAAAAACAATGAAGATTTTCCTTTATTTGAGTCAT------------TTGAAGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGCCTTGAACTGATTCA--TTTTG---------AACACAAGCAATAT----------------TGATTTT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTACTTTTATGTTTATTTATTTAAATGTTAAAGGTATTG--------ATTTGTAG--GGTAT-CTATAA---AGAATAAGG-GCTCCATAATATTAAATTAGTCAATATC-TACC-TTATGTTTAATGCTCATTAAAGAGTTTTTGTT-AAGATC-TTAATAAT--TACGTGGTTTGTTTGATTACCTGAACAATGGAATAAGGATCTCATAGATAGGAAT-TCAT--AATCAATAGA-TTAGATTGAGAATTTCAATCTATTGATTTCAGATTCAGATTAAATTTTGCTGAGAGT-TACACTATAGCATTTAGAAGTTCATGTTATATAATAATTACAAAATCTAGCATAT-ATTTTATTTTCTTTATCTGTTTTTTGAATATAAACCAGTATTGACTAAGGGTTCAGGAGATACTTA
gi|10 : AGGCCATCA-AAAATT--AA-T-TA-TCTG------GTT-CTCAGG-CCA--ATA--TT-TTC--------AATTTT------------------------T---GATG-AGGGAGGGAGGC-AT-T-TTT---T----T-TTTCCTTTTTAT------T---------G-C--CAA--TG---AAAAT-GA-CGA-GG--GAGG---C-T-----TTTTT-T-T--------attt
gi|11 : cacattaaccaatacacagcatacagtggacatgaatattcagttAGGCCA-CATAAAATA--AA-T-TG-TCTG------GTT-CTCGGG--AA--ATTGATT-TTG--A--AA-AAG--T------------------------G---GGT--AGGTAGGTAGGG-T--T-TTTA--T----T-TTTTGTTTTTAT------T---------ttgaacaaatgattta
gi|12 : taCCA-CAATAAATT--AAGTGTC-TCTG-------TT-CTCAGG-CCA--ATT--TC-TTC--C--AA-AA---C------------------------A---GATGAAGGGAGGGAGGCAA--TGTTT---T----T-TTTCATTTTTAT------T---------GTGGTCAAT-T----AAAATAGA-TGA-GG----AG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------tcccgaagagcgagggtagggattgctattgaaagctagtgtatccaaaactaagatttcaagtaagacgttttaaaaaaaaaaataaa
gi|13 : GGCCA-TATAGTATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--GTT--TT--TA--A--AA-AA---C------------------------A---AATG-AGGGAGGGAGGC------------------------TTTTTAT------T---------T-G--CAG--T----GAAGTAGA--AA-GG--GAGG---C-A-----TTTTTAT-TTA------AA--TC-CCGAACTC--------A---TCAG-----------G
gi|14 : CA-TGTAAAATT--AA-T-TT-TC-G------GTT-CTCAGT-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GAT-----AAGGGAGGC----T-TAT---T----T-AATCATTTTTAT------C---------A-G--CAA--T-----AAATGGA-TGA-GG--GAGA---C-A-----TTTTT-TAA--------AA--TC-CCAAACTC--------A---TTGG-----------aaa
gi|16 : GGCCA-CATAAAATA--AA-T-TTGTCTG------GTT-CTCGGG-GAA--ATT--GA-TTT--G--AA-AA----------------------------A---G-T--AGGTAGGG-----------TT---T----T-TTTAATTTa
gi|17 : GGCCA-TGAAAAATT--AA-T-TA-TCTG------GTT-CTTGGG-CCA--TTT--TT-TTC--------AA---T------------------------ATTTGACG-AGGGAGGTGGGT-A--T-TTT---TC---C-TCTTGTTTTcccaaagagtgagggtagggatt
gi|18 : CCA-CATAAAATT--------C-TCTC------GTT-CTTATG-CCA--ATT--TT-CTT--C--AA-AA---T------------------------A---GATG-AGGGAGGCAGGaa
gi|2 : GGAGGAAGCA-A--T-TTT---TGAATT-TTTCATTTTGGTGATGGGT---------G-G--CAAATT----AAAATAGAATGATGG--GAGG---T-AATTTTTTCTT-T-T--------AAGGTCTCAGAACTTCGCTGCACGAACCCGGAAGGGGC----GGG------------GA-AA---------------AATGACTTCTCG---TAACCGGTG------AAAT---CCAAAAGCAATGAAGATTTTCCTATATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCACGTTTTGAACACAGGCAACNNNNNNNNNNNNNNNNNNNNNNNNNTATGATTGTCTACACTGTATATCGTGATTAGCGTG-TTCTGCTTGATGAACTA-----ATG---ATTTA---AAAAG-TAAAGGTATT---------A--TGTAAGCGGTACTCT-T-A---GAAC-AAGGAGTAC--TAA-ACT--GTTATTCAA-A-CGTACCATTA-ATTTAA-ACT-GTTGGA----TTTTA-TGAAGATTATTAATAATAGTGCGT--TGTGTTT--------GAATAAT---CGAAGGATCTAAT-GATAGG--TCTCAT--AATCA--AGATTTACA-TGAGAA-TTCAATCTATT-ATTTCAG--TCAAATTAAA-ATTGCT---AGTGTAC-CT-TAGTTGTTAGGAA-TCATGTAATAACATA---ACAAA--CAAGCCAATCATTTTA-TTTCTTTA--CG---TTTGAAT------CAGAA---ACT--GGGTTC---GGATACTTA
gi|20 : aAGGCCA-AATAAAATT--AA-T-CA-TCTG------GTT-CTCAGgct
gi|21 : AGGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-C
gi|3 : t-CATAAAACTTAAA-T-TC-TCTGCACCCTGTT-CTCAGGGCCA--ATT--TTTCTC--CCAAA-AA---C------------------------A---GATG-AGGGAGGGAGGCAA--T-TTT---T----T-TTGCATTTTTAT------T---------G-GC-CAA--T----AAAATAGA-TGA-GG--GAGG---T-A------TTTT-T-T--------AA--TC-CAGAACTTA-------G---TCGG-----------GGG------------G
gi|3 : cac----TAA---GTG------AA-----TCAAAAGCAATGAAGATTTTCCTTTATTTGAGTCAT------------TTAAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACT------ATG-A---TTA---AAAAG-TAAAGGTATTG--------A--TGTAG--GGTAC-CT-T-AATTAGAA-AAGG-GTAC--TAAT-TT--A--ATTCAA-A-C--AACATTA-ATTT-A-ACT--TT---G-GTTTTTA---AAGAT--GAAATAATAATG-GT--TGTGTTT-------CGAA-AAT---CTGAGGATCT-AT-GATAGG--T-TCATAAAATCA--AGA-TTACATTGAG-A-TTCAATCTA-TAATTTCAG--TCAGA-TAAATgggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatattaagtgaatcaaaagcaatgaagattttcctttatttgagtcatttaaggcctggtcatctggactggagactgcagaacacttgtgtaaattgtacatgtatataattgtcttgaactgattcattttgaacacaggcaatattgattgttacatgtatattgattaggttctgatgaactatgattaaaaagtaaaggtattgatgtagggtaccttaattagaaaagggtactaatttaattcaaacaacattaatttaactttggtttttaaagatgaaataataatggttgtgtttcgaaaatctgaggatctatgataggttcataaaatcaagattacattgagattcaatctataatttcagtcagataaatgc
gi|4 : caccataaaacttaaattctctgcaccctgttctcagggccaatttttctcccaaaaacagatgagggagggaggcaattttttttgcatttttattggccaataaaatagatgagggaggtattttttaatccagaacttagtcgggggggggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatat-CATAAAATT--AA-T-TC-TCTG------ATTTCTCGGG-CAA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAAGGAGAC-A--T-TTT---A----AATTTCATTTTCAT------T---------G-G--CAA--T----AAAATAGA-CGA-GG--AAGG---T-A-----TCTCT-T-T--------AA--TC-CAGAACTT--------G---TCGA-----------AAA------------AA-AACAACTTTAAATATAAAA-G--TTATC----AAA---GTG------AA-----CTAAAATCACTGAAGATTTTCTTTTATTTGAGTCATCTAAGATATAATTTAAGGCCTGATCATCTTGACTGGAGACTGCAGAAC---TGTGCAAA--------ATACATAATTGTCTTGAACTGATTCA--TTTT----------AACACAGGCAATAT----------------TGA-TAT-TACA-TGTATAT--TGATTAA---GTTTCAG----ATGAAC----------TATAATTA---AAAAG-TAAATGTATTGAAAAACAAA--TATAG--AGTAC-C--T-A---AGAA-AAGG-GTAC-----CGTT--TTTATTCAA-A-C-TACgc
gi|5 : AGGTCA-CACAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--C----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------TA--TC-CAGAATTT--------G---TTAA-----------AAG------------AA-AA---------------AA-at
gi|5 : ta-G--TTTTC----CAA---GTG------AA-----TCGTAAGCACTGAAGATTTTCCTTTATTTGAGTCATCTACAATAGAATTTGAGGCCTGGTCATCTGGGCTGGAGACTGCAGAACACTTGTGTAA------CAAATGCATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGAATAT-CACA-TGTAT-C--TGATTAaaaaacaaaaaaaaactttcaacatatatgttttccaagtgaatcgtaagcactgaagattttcctttatttgagtcatctacaatagaatttgaggcctggtcatctgggctggagactgcagaacacttgtgtaacaaatgcataattgtcttgaactgattcattttgaacacaggcaatattgaatatcacatgtatctgattaactataatttctaccggtactgatccatgttatttttttaatat
gi|6 : taaggtcacacaaaattaattctctggttctcaggccaattttctccaaaacagatgagggagggaggcattttacttttcatttttattggcaataaaatagatgagggaggtatttttttttatccagaatttgttaaaagaaaaaaaaaaacaaaaaaaaactttcaacatatatCCA-CATAAAATT--AA-T-TG-TTTG--------T-C---GG-CCAATATT--TT-TTT--C-----AA---C------------------------A---GATG-A-GGAAGGAGGT-C--TATTTAGAT----T-TTTCATTTATAT------TACCAAAAACA-G--CAA--T----AAAATACA-TGA-GGGTGAGT---TGA-----GTTTT-T-T--------actataatttctaccggtactgatccatgttatttttttaatat
gi|7 : cGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-GTAAGG-CCA--ATT--TT-CTC--C--AA-AT---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATGGA-TGA-GA--GTGG---T-A-----TTTTT-TAA--------AA--TC-CAGAA-TT--------G---TCAA-----------AAAAAAAAAACCAACAA-AA---------------AA-A--CTTTCAACATAA---ATGCTTTCTAAGTGGATCATAAGCACTAAAGATTTTCATTTATTTgggaaagaaaactttttaaaggttctaagtaggacgatgccaattcataatcactttcccatatcttgtggggagatcacccacgattcatatcgcacccataagatttgagccttgtggatcatcctcgaaccgaggactgcaaggagtctctgtaccataaataa
gi|8 : CA-TATAAAATT--AA-T-TC-TCCG------GTT-TTCAGG-CCA--ATT--TT-CTCAAC--AATAA---CAACAAATTATTAAAAAAAAAAACCA---GATG-AGGGAGGAAGGC------------------------TTTTTA-------------------G--TAA--T----GAAATAGA-TAA-GG--GAGGAACT-A-----TTTTT-T-TTTATTTTAAA--TC-CAGAACTT--------G---CCAGATAACAATTTCAGA------------GATTA---------------AA-G--TTCTG----TAA---CTG------AA-----TCTTAAACATAGTAGACTTTCCATTATCTGGGTCAT------------cgccttataatgtaaattagaatttgcctcatcggaaacctggatctgaggaagactggatagtgctaa
gi|9 : GGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AATT-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--TAATAAAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TTGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----ACAAAAGTAATGAAGATTTTCCTTTATTTGcaacaacagaatttaatgcttgtggactgcataattctgaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGATAAAACAGAGAAAAATCACTGTAATCTTAAGAATACTAAGGACTTCTGATTGTTAGTATTATTATAAAAATTTAAGCTAGTGGACAGCGTCCATCTG
Unaligned ( gi|19 ): TTACCTTAAAATAATAGTTTACAAGCATAAGTAT
Alignments
lowQualScore : 2222222222222222222222222222 22222222222222222 1111111111111111 11111 1111111111 11111111 5555555555555555555555555555555555555555555555 1111 111111 11111 666666666666 11 333333333 5555555555555555 11 111 1 2222 555555555555555 111 1 444444444444 11 1 22222222 1 1 2222222222222 111111 1 1 444444444 333 22 11 11 55555555 1 222 22222 2222 11 11 1 1 1 11 222 1 1 1 1 222 11 1 1 2222222 333333 222 11 222
lowQualScore : 2 33 2 2 2 666666 2 2 33 33 2 77777 2 8888888888888888888888888888 444 2 00000000000000000 2 3333333333333333 3 77 77 9999 3 3 44 555 3 33333 3 6666666666 55 3 66666666 666 8888888888888888888888888888888888888888888888 5 77 5555 888 444444 99999 0 1 888888888888 0 888888 1 11 222222222 3333333333333333 6 1 8 8 0 11 777 0 1111 666666666666666 777 0 333333333333 33 0 22222222 0 0 9999999999999 444444 7 3 7 3 222222222 444 55 11 6 88 55555555 2 333 22222 2222 88 88 3 7 7 3 7 2 88 7 88 000 5 5 5 22 5 1 22 111 88 1 22 5 5 7777777 000000 1 111 88 000
lowQualScore : . .. . . . ...... . . .. .. . ..... . ............................ ... . ................. . ................ . .. .. .... . . .. ... . ..... . .......... .. . ........ ... .............................................. . .. .... ... ...... ..... . . ............ . ...... . .. ......... ................ . . . . . .. ... . .... ............... ... . ............ .. . ........ . . ............. ...... . . . . ......... ... .. .. . .. ........ . ... ..... .... .. .. . . . . . . .. . .. ... . . . .. . . .. ... .. . .. . . ....... ...... . ... .. ...
lowQualScore : 2 11 2 2 2 444444 2 5 44 44 5 88888 5 1111111111111111111111111111 444 5 11111111111111111 5 4444444444444444 1 33 33 6666 1 1 22 444 1 88888 1 5555555555 00 6 88888888 444 0000000000000000000000000000000000000000000000 0 99 6666 888 444444 44444 8 0 333333333333 8 222222 0 00 000000000 0000000000000000 0 4 0 0 8 00 555 0 2222 555555555555555 555 0 555555555555 88 0 88888888 0 0 0000000000000 222222 3 3 3 3 000000000 000 33 00 7 33 33333333 0 333 00000 7777 33 33 3 3 3 3 3 0 33 3 33 555 0 5 5 00 5 0 00 555 55 0 00 0 5 5555555 000000 0 000 55 555
consensus : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTTG--TGTTT-------CGAACAAT---CTAAGGATCT-A-T-GATAGG--T-TCAT--AATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
Reference ( family-2 ) : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTTG--TGTTT-------CGAACAAT---CTAAGGATCT-A-T-GATAGG--T-TCAT--AATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
gi|1 : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AA-T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TAAAAAACAATGAAGATTTTCCTTTATTTGAGTCAT------------TTGAAGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGCCTTGAACTGATTCA--TTTTG---------AACACAAGCAATAT----------------TGATTTT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTACTTTTATGTTTATTTATTTAAATGTTAAAGGTATTG--------ATTTGTAGG--GTAT-CTATAA---AGAATAAGG-GCTCCATAATATTAAATTAGTCAATATC-TACC-TTATGTTTAATGCTCATTAAAGAGTTTTTGTT-AAGATC-TTAATAAT--TACGTGGTTTGTTTGATTACCTGAACAATGGAATAAGGATCTCA-TAGATAGGAAT-TCAT--AATCAATAGA-TTAGATTGAGAATTTCAATCTATTGATTTCAGATTCAGATTAAATTTTGCTGAGAGT-TACACTATAGCATTTAGAAGTTCATGTTATATAATAATTACAAAATCTAGCATAT-ATTTTATTTTCTTTATCTGTTTTTTGAATATAAACCAGTATTGACTAAGGGTTCAGGAGATACTTA
gi|10 : AGGCCATCA-AAAATT--AA-T-TA-TCTG------GTT-CTCAGG-CCA--ATA--TT-TTC--------AATTTT------------------------T---GATG-AGGGAGGGAGGC-AT-T-TTT---T----T-TTTCCTTTTTAT------T---------G-C--CAA--TG---AAAAT-GA-CGA-GG--GAGG---C-T-----TTTTT-T-T--------attt
gi|11 : cacattaaccaatacacagcatacagtggacatgaatattcagttAGGCCA-CATAAAATA--AA-T-TG-TCTG------GTT-CTCGGG--AA--ATTGATT-TTG--A--AA-AAG--T------------------------G---GGT--AGGTAGGTAGGG-T--T-TTTA--T----T-TTTTGTTTTTAT------T---------ttgaacaaatgattta
gi|12 : taCCA-CAATAAATT--AAGTGTC-TCTG-------TT-CTCAGG-CCA--ATT--TC-TTC--C--AA-AA---C------------------------A---GATGAAGGGAGGGAGGCAA--TGTTT---T----T-TTTCATTTTTAT------T---------GTGGTCAAT-T----AAAATAGA-TGA-GG----AG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------tcccgaagagcgagggtagggattgctattgaaagctagtgtatccaaaactaagatttcaagtaagacgttttaaaaaaaaaaataaa
gi|13 : GGCCA-TATAGTATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--GTT--TT--TA--A--AA-AA---C------------------------A---AATG-AGGGAGGGAGGC------------------------TTTTTAT------T---------T-G--CAG--T----GAAGTAGA--AA-GG--GAGG---C-A-----TTTTTAT-TTA------AA--TC-CCGAACTC--------A---TCAG-----------G
gi|14 : CA-TGTAAAATT--AA-T-TT-TC-G------GTT-CTCAGT-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GAT-----AAGGGAGGC----T-TAT---T----T-AATCATTTTTAT------C---------A-G--CAA--T-----AAATGGA-TGA-GG--GAGA---C-A-----TTTTT-TAA--------AA--TC-CCAAACTC--------A---TTGG-----------aaa
gi|16 : GGCCA-CATAAAATA--AA-T-TTGTCTG------GTT-CTCGGG-GAA--ATT--GA-TTT--G--AA-AA----------------------------A---G-T--AGGTAGGG-----------TT---T----T-TTTAATTTa
gi|17 : GGCCA-TGAAAAATT--AA-T-TA-TCTG------GTT-CTTGGG-CCA--TTT--TT-TTC--------AA---T------------------------ATTTGACG-AGGGAGGTGGGT-A--T-TTT---TC---C-TCTTGTTTTcccaaagagtgagggtagggatt
gi|18 : CCA-CATAAAATT--------C-TCTC------GTT-CTTATG-CCA--ATT--TT-CTT--C--AA-AA---T------------------------A---GATG-AGGGAGGCAGGaa
gi|2 : GGAGGAAGCA-A--T-TTT---TGAATT-TTTCATTTTGGTGATGGGT---------G-G--CAAATT----AAAATAGAATGATGG--GAGG---T-AATTTTTTCTT-T-T--------AAGGTCTCAGAACTTCGCTGCACGAACCCGGAAGGGGC----GGG------------GA-AA---------------AATGACTTCTCG---TAACCGGTG------AAAT---CCAAAAGCAATGAAGATTTTCCTATATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCACGTTTTGAACACAGGCAACNNNNNNNNNNNNNNNNNNNNNNNNNTATGATTGTCTACACTGTATATCGTGATTAGCGTG-TTCTGCTTGATGAACTA-----ATG---ATTTA---AAAAG-TAAAGGTATT---------A--TGTAAGCGGTACTCT-T-A---GAAC-AAGGAGTAC--TAA-ACT--GTTATTCAA-A-CGTACCATTA-ATTTAA-ACT-GTTGGA----TTTTA-TGAAGATTATTAATAATAGTGCGTTG--TGTTT--------GAATAAT---CGAAGGATCT-AAT-GATAGG--TCTCAT--AATCA--AGATTTACA-TGAGAA-TTCAATCTATT-ATTTCAG--TCAAATTAAA-ATTGCT---AGTGTAC-CT-TAGTTGTTAGGAA-TCATGTAATAACATA---ACAAA--CAAGCCAATCATTTTA-TTTCTTTA--CG---TTTGAAT------CAGAA---ACT--GGGTTC---GGATACTTA
gi|20 : aAGGCCA-AATAAAATT--AA-T-CA-TCTG------GTT-CTCAGgct
gi|21 : AGGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-C
gi|3 : t-CATAAAACTTAAA-T-TC-TCTGCACCCTGTT-CTCAGGGCCA--ATT--TTTCTC--CCAAA-AA---C------------------------A---GATG-AGGGAGGGAGGCAA--T-TTT---T----T-TTGCATTTTTAT------T---------G-GC-CAA--T----AAAATAGA-TGA-GG--GAGG---T-A------TTTT-T-T--------AA--TC-CAGAACTTA-------G---TCGG-----------GGG------------G
gi|3 : cac----TAA---GTG------AA-----TCAAAAGCAATGAAGATTTTCCTTTATTTGAGTCAT------------TTAAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACT------ATG-A---TTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-AATTAGAA-AAGG-GTAC--TAAT-TT--A--ATTCAA-A-C--AACATTA-ATTT-A-ACT--TT---G-GTTTTTA---AAGAT--GAAATAATAATG-GTTG--TGTTT-------CGAA-AAT---CTGAGGATCT-A-T-GATAGG--T-TCATAAAATCA--AGA-TTACATTGAG-A-TTCAATCTA-TAATTTCAG--TCAGA-TAAATgggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatattaagtgaatcaaaagcaatgaagattttcctttatttgagtcatttaaggcctggtcatctggactggagactgcagaacacttgtgtaaattgtacatgtatataattgtcttgaactgattcattttgaacacaggcaatattgattgttacatgtatattgattaggttctgatgaactatgattaaaaagtaaaggtattgatgtagggtaccttaattagaaaagggtactaatttaattcaaacaacattaatttaactttggtttttaaagatgaaataataatggttgtgtttcgaaaatctgaggatctatgataggttcataaaatcaagattacattgagattcaatctataatttcagtcagataaatgc
gi|4 : caccataaaacttaaattctctgcaccctgttctcagggccaatttttctcccaaaaacagatgagggagggaggcaattttttttgcatttttattggccaataaaatagatgagggaggtattttttaatccagaacttagtcgggggggggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatat-CATAAAATT--AA-T-TC-TCTG------ATTTCTCGGG-CAA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAAGGAGAC-A--T-TTT---A----AATTTCATTTTCAT------T---------G-G--CAA--T----AAAATAGA-CGA-GG--AAGG---T-A-----TCTCT-T-T--------AA--TC-CAGAACTT--------G---TCGA-----------AAA------------AA-AACAACTTTAAATATAAAA-G--TTATC----AAA---GTG------AA-----CTAAAATCACTGAAGATTTTCTTTTATTTGAGTCATCTAAGATATAATTTAAGGCCTGATCATCTTGACTGGAGACTGCAGAAC---TGTGCAAA--------ATACATAATTGTCTTGAACTGATTCA--TTTT----------AACACAGGCAATAT----------------TGA-TAT-TACA-TGTATAT--TGATTAA---GTTTCAG----ATGAAC----------TATAATTA---AAAAG-TAAATGTATTGAAAAACAAA--TATAGA--GTAC-C--T-A---AGAA-AAGG-GTAC-----CGTT--TTTATTCAA-A-C-TACgc
gi|5 : AGGTCA-CACAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--C----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------TA--TC-CAGAATTT--------G---TTAA-----------AAG------------AA-AA---------------AA-at
gi|5 : ta-G--TTTTC----CAA---GTG------AA-----TCGTAAGCACTGAAGATTTTCCTTTATTTGAGTCATCTACAATAGAATTTGAGGCCTGGTCATCTGGGCTGGAGACTGCAGAACACTTGTGTAA------CAAATGCATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGAATAT-CACA-TGTAT-C--TGATTAaaaaacaaaaaaaaactttcaacatatatgttttccaagtgaatcgtaagcactgaagattttcctttatttgagtcatctacaatagaatttgaggcctggtcatctgggctggagactgcagaacacttgtgtaacaaatgcataattgtcttgaactgattcattttgaacacaggcaatattgaatatcacatgtatctgattaactataatttctaccggtactgatccatgttatttttttaatat
gi|6 : taaggtcacacaaaattaattctctggttctcaggccaattttctccaaaacagatgagggagggaggcattttacttttcatttttattggcaataaaatagatgagggaggtatttttttttatccagaatttgttaaaagaaaaaaaaaaacaaaaaaaaactttcaacatatatCCA-CATAAAATT--AA-T-TG-TTTG--------T-C---GG-CCAATATT--TT-TTT--C-----AA---C------------------------A---GATG-A-GGAAGGAGGT-C--TATTTAGAT----T-TTTCATTTATAT------TACCAAAAACA-G--CAA--T----AAAATACA-TGA-GGGTGAGT---TGA-----GTTTT-T-T--------actataatttctaccggtactgatccatgttatttttttaatat
gi|7 : cGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-GTAAGG-CCA--ATT--TT-CTC--C--AA-AT---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATGGA-TGA-GA--GTGG---T-A-----TTTTT-TAA--------AA--TC-CAGAA-TT--------G---TCAA-----------AAAAAAAAAACCAACAA-AA---------------AA-A--CTTTCAACATAA---ATGCTTTCTAAGTGGATCATAAGCACTAAAGATTTTCATTTATTTgggaaagaaaactttttaaaggttctaagtaggacgatgccaattcataatcactttcccatatcttgtggggagatcacccacgattcatatcgcacccataagatttgagccttgtggatcatcctcgaaccgaggactgcaaggagtctctgtaccataaataa
gi|8 : CA-TATAAAATT--AA-T-TC-TCCG------GTT-TTCAGG-CCA--ATT--TT-CTCAAC--AATAA---CAACAAATTATTAAAAAAAAAAACCA---GATG-AGGGAGGAAGGC------------------------TTTTTA-------------------G--TAA--T----GAAATAGA-TAA-GG--GAGGAACT-A-----TTTTT-T-TTTATTTTAAA--TC-CAGAACTT--------G---CCAGATAACAATTTCAGA------------GATTA---------------AA-G--TTCTG----TAA---CTG------AA-----TCTTAAACATAGTAGACTTTCCATTATCTGGGTCAT------------cgccttataatgtaaattagaatttgcctcatcggaaacctggatctgaggaagactggatagtgctaa
gi|9 : GGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AATT-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--TAATAAAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TTGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----ACAAAAGTAATGAAGATTTTCCTTTATTTGcaacaacagaatttaatgcttgtggactgcataattctgaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGATAAAACAGAGAAAAATCACTGTAATCTTAAGAATACTAAGGACTTCTGATTGTTAGTATTATTATAAAAATTTAAGCTAGTGGACAGCGTCCATCTG
Unaligned ( gi|19 ): TTACCTTAAAATAATAGTTTACAAGCATAAGTAT
Alignments
lowQualScore : 2222222222222222222222222222 22222222222222222 1111111111111111 11111 1111111111 11111111 5555555555555555555555555555555555555555555555 1111 111111 11111 666666666666 11 333333333 5555555555555555 11 111 1 2222 555555555555555 111 1 444444444444 11 1 22222222 1 1 2222222222222 111111 1 1 444444444 333 22 11 11 55555555 1 222 22222 2222 11 11 1 1 1 11 222 1 1 1 1 222 11 1 1 2222222 333333 222 11 222
lowQualScore : 2 33 2 2 2 666666 2 2 33 33 2 77777 2 8888888888888888888888888888 444 2 00000000000000000 2 3333333333333333 3 77 77 9999 3 3 44 555 3 33333 3 6666666666 55 3 66666666 666 8888888888888888888888888888888888888888888888 5 77 5555 888 444444 99999 0 1 888888888888 0 888888 1 11 222222222 3333333333333333 6 1 8 8 0 11 777 0 1111 666666666666666 777 0 333333333333 33 0 22222222 0 0 9999999999999 444444 7 3 7 3 222222222 444 55 11 6 88 55555555 2 333 22222 2222 88 88 3 7 7 3 7 2 88 7 88 000 5 5 5 22 5 1 22 111 88 1 22 5 5 7777777 000000 1 111 88 000
lowQualScore : . .. . . . ...... . . .. .. . ..... . ............................ ... . ................. . ................ . .. .. .... . . .. ... . ..... . .......... .. . ........ ... .............................................. . .. .... ... ...... ..... . . ............ . ...... . .. ......... ................ . . . . . .. ... . .... ............... ... . ............ .. . ........ . . ............. ...... . . . . ......... ... .. .. . .. ........ . ... ..... .... .. .. . . . . . . .. . .. ... . . . .. . . .. ... .. . .. . . ....... ...... . ... .. ...
lowQualScore : 2 11 2 2 2 444444 2 5 44 44 5 88888 5 1111111111111111111111111111 444 5 11111111111111111 5 4444444444444444 1 33 33 6666 1 1 22 444 1 88888 1 5555555555 00 6 88888888 444 0000000000000000000000000000000000000000000000 0 99 6666 888 444444 44444 8 0 333333333333 8 222222 0 00 000000000 0000000000000000 0 4 0 0 8 00 555 0 2222 555555555555555 555 0 555555555555 88 0 88888888 0 0 0000000000000 222222 3 3 3 3 000000000 000 33 00 7 33 33333333 0 333 00000 7777 33 33 3 3 3 3 3 0 33 3 33 555 0 5 5 00 5 0 00 555 55 0 00 0 5 5555555 000000 0 000 55 555
consensus : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTTG--TGTTT-------CGAACAAT---CTAAGGATCT-A-T-GATAGG--T-TCAT--AATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
Reference ( family-2 ) : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTTG--TGTTT-------CGAACAAT---CTAAGGATCT-A-T-GATAGG--T-TCAT--AATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
gi|1 : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AA-T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TAAAAAACAATGAAGATTTTCCTTTATTTGAGTCAT------------TTGAAGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGCCTTGAACTGATTCA--TTTTG---------AACACAAGCAATAT----------------TGATTTT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTACTTTTATGTTTATTTATTTAAATGTTAAAGGTATTG--------ATTTGTAGG--GTAT-CTATAA---AGAATAAGG-GCTCCATAATATTAAATTAGTCAATATC-TACC-TTATGTTTAATGCTCATTAAAGAGTTTTTGTT-AAGATC-TTAATAAT--TACGTGGTTTGTTTGATTACCTGAACAATGGAATAAGGATCTCA-TAGATAGGAAT-TCAT--AATCAATAGA-TTAGATTGAGAATTTCAATCTATTGATTTCAGATTCAGATTAAATTTTGCTGAGAGT-TACACTATAGCATTTAGAAGTTCATGTTATATAATAATTACAAAATCTAGCATAT-ATTTTATTTTCTTTATCTGTTTTTTGAATATAAACCAGTATTGACTAAGGGTTCAGGAGATACTTA
gi|10 : AGGCCATCA-AAAATT--AA-T-TA-TCTG------GTT-CTCAGG-CCA--ATA--TT-TTC--------AATTTT------------------------T---GATG-AGGGAGGGAGGC-AT-T-TTT---T----T-TTTCCTTTTTAT------T---------G-C--CAA--TG---AAAAT-GA-CGA-GG--GAGG---C-T-----TTTTT-T-T--------attt
gi|11 : cacattaaccaatacacagcatacagtggacatgaatattcagttAGGCCA-CATAAAATA--AA-T-TG-TCTG------GTT-CTCGGG--AA--ATTGATT-TTG--A--AA-AAG--T------------------------G---GGT--AGGTAGGTAGGG-T--T-TTTA--T----T-TTTTGTTTTTAT------T---------ttgaacaaatgattta
gi|12 : taCCA-CAATAAATT--AAGTGTC-TCTG-------TT-CTCAGG-CCA--ATT--TC-TTC--C--AA-AA---C------------------------A---GATGAAGGGAGGGAGGCAA--TGTTT---T----T-TTTCATTTTTAT------T---------GTGGTCAAT-T----AAAATAGA-TGA-GG----AG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------tcccgaagagcgagggtagggattgctattgaaagctagtgtatccaaaactaagatttcaagtaagacgttttaaaaaaaaaaataaa
gi|13 : GGCCA-TATAGTATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--GTT--TT--TA--A--AA-AA---C------------------------A---AATG-AGGGAGGGAGGC------------------------TTTTTAT------T---------T-G--CAG--T----GAAGTAGA--AA-GG--GAGG---C-A-----TTTTTAT-TTA------AA--TC-CCGAACTC--------A---TCAG-----------G
gi|14 : CA-TGTAAAATT--AA-T-TT-TC-G------GTT-CTCAGT-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GAT-----AAGGGAGGC----T-TAT---T----T-AATCATTTTTAT------C---------A-G--CAA--T-----AAATGGA-TGA-GG--GAGA---C-A-----TTTTT-TAA--------AA--TC-CCAAACTC--------A---TTGG-----------aaa
gi|16 : GGCCA-CATAAAATA--AA-T-TTGTCTG------GTT-CTCGGG-GAA--ATT--GA-TTT--G--AA-AA----------------------------A---G-T--AGGTAGGG-----------TT---T----T-TTTAATTTa
gi|17 : GGCCA-TGAAAAATT--AA-T-TA-TCTG------GTT-CTTGGG-CCA--TTT--TT-TTC--------AA---T------------------------ATTTGACG-AGGGAGGTGGGT-A--T-TTT---TC---C-TCTTGTTTTcccaaagagtgagggtagggatt
gi|18 : CCA-CATAAAATT--------C-TCTC------GTT-CTTATG-CCA--ATT--TT-CTT--C--AA-AA---T------------------------A---GATG-AGGGAGGCAGGaa
gi|2 : GGAGGAAGCA-A--T-TTT---TGAATT-TTTCATTTTGGTGATGGGT---------G-G--CAAATT----AAAATAGAATGATGG--GAGG---T-AATTTTTTCTT-T-T--------AAGGTCTCAGAACTTCGCTGCACGAACCCGGAAGGGGC----GGG------------GA-AA---------------AATGACTTCTCG---TAACCGGTG------AAAT---CCAAAAGCAATGAAGATTTTCCTATATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCACGTTTTGAACACAGGCAACNNNNNNNNNNNNNNNNNNNNNNNNNTATGATTGTCTACACTGTATATCGTGATTAGCGTG-TTCTGCTTGATGAACTA-----ATG---ATTTA---AAAAG-TAAAGGTATT---------A--TGTAAGCGGTACTCT-T-A---GAAC-AAGGAGTAC--TAA-ACT--GTTATTCAA-A-CGTACCATTA-ATTTAA-ACT-GTTGGA----TTTTA-TGAAGATTATTAATAATAGTGCGTTG--TGTTT--------GAATAAT---CGAAGGATCT-AAT-GATAGG--TCTCAT--AATCA--AGATTTACA-TGAGAA-TTCAATCTATT-ATTTCAG--TCAAATTAAA-ATTGCT---AGTGTAC-CT-TAGTTGTTAGGAA-TCATGTAATAACATA---ACAAA--CAAGCCAATCATTTTA-TTTCTTTA--CG---TTTGAAT------CAGAA---ACT--GGGTTC---GGATACTTA
gi|20 : aAGGCCA-AATAAAATT--AA-T-CA-TCTG------GTT-CTCAGgct
gi|21 : AGGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-C
gi|3 : t-CATAAAACTTAAA-T-TC-TCTGCACCCTGTT-CTCAGGGCCA--ATT--TTTCTC--CCAAA-AA---C------------------------A---GATG-AGGGAGGGAGGCAA--T-TTT---T----T-TTGCATTTTTAT------T---------G-GC-CAA--T----AAAATAGA-TGA-GG--GAGG---T-A------TTTT-T-T--------AA--TC-CAGAACTTA-------G---TCGG-----------GGG------------G
gi|3 : cac----TAA---GTG------AA-----TCAAAAGCAATGAAGATTTTCCTTTATTTGAGTCAT------------TTAAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACT------ATG-A---TTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-AATTAGAA-AAGG-GTAC--TAAT-TT--A--ATTCAA-A-C--AACATTA-ATTT-A-ACT--TT---G-GTTTTTA---AAGAT--GAAATAATAATG-GTTG--TGTTT-------CGAA-AAT---CTGAGGATCT-A-T-GATAGG--T-TCATAAAATCA--AGA-TTACATTGAG-A-TTCAATCTA-TAATTTCAG--TCAGA-TAAATgggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatattaagtgaatcaaaagcaatgaagattttcctttatttgagtcatttaaggcctggtcatctggactggagactgcagaacacttgtgtaaattgtacatgtatataattgtcttgaactgattcattttgaacacaggcaatattgattgttacatgtatattgattaggttctgatgaactatgattaaaaagtaaaggtattgatgtagggtaccttaattagaaaagggtactaatttaattcaaacaacattaatttaactttggtttttaaagatgaaataataatggttgtgtttcgaaaatctgaggatctatgataggttcataaaatcaagattacattgagattcaatctataatttcagtcagataaatgc
gi|4 : caccataaaacttaaattctctgcaccctgttctcagggccaatttttctcccaaaaacagatgagggagggaggcaattttttttgcatttttattggccaataaaatagatgagggaggtattttttaatccagaacttagtcgggggggggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatat-CATAAAATT--AA-T-TC-TCTG------ATTTCTCGGG-CAA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAAGGAGAC-A--T-TTT---A----AATTTCATTTTCAT------T---------G-G--CAA--T----AAAATAGA-CGA-GG--AAGG---T-A-----TCTCT-T-T--------AA--TC-CAGAACTT--------G---TCGA-----------AAA------------AA-AACAACTTTAAATATAAAA-G--TTATC----AAA---GTG------AA-----CTAAAATCACTGAAGATTTTCTTTTATTTGAGTCATCTAAGATATAATTTAAGGCCTGATCATCTTGACTGGAGACTGCAGAAC---TGTGCAAA--------ATACATAATTGTCTTGAACTGATTCA--TTTT----------AACACAGGCAATAT----------------TGA-TAT-TACA-TGTATAT--TGATTAA---GTTTCAG----ATGAAC----------TATAATTA---AAAAG-TAAATGTATTGAAAAACAAA--TATAGA--GTAC-C--T-A---AGAA-AAGG-GTAC-----CGTT--TTTATTCAA-A-C-TACgc
gi|5 : AGGTCA-CACAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--C----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------TA--TC-CAGAATTT--------G---TTAA-----------AAG------------AA-AA---------------AA-at
gi|5 : ta-G--TTTTC----CAA---GTG------AA-----TCGTAAGCACTGAAGATTTTCCTTTATTTGAGTCATCTACAATAGAATTTGAGGCCTGGTCATCTGGGCTGGAGACTGCAGAACACTTGTGTAA------CAAATGCATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGAATAT-CACA-TGTAT-C--TGATTAaaaaacaaaaaaaaactttcaacatatatgttttccaagtgaatcgtaagcactgaagattttcctttatttgagtcatctacaatagaatttgaggcctggtcatctgggctggagactgcagaacacttgtgtaacaaatgcataattgtcttgaactgattcattttgaacacaggcaatattgaatatcacatgtatctgattaactataatttctaccggtactgatccatgttatttttttaatat
gi|6 : taaggtcacacaaaattaattctctggttctcaggccaattttctccaaaacagatgagggagggaggcattttacttttcatttttattggcaataaaatagatgagggaggtatttttttttatccagaatttgttaaaagaaaaaaaaaaacaaaaaaaaactttcaacatatatCCA-CATAAAATT--AA-T-TG-TTTG--------T-C---GG-CCAATATT--TT-TTT--C-----AA---C------------------------A---GATG-A-GGAAGGAGGT-C--TATTTAGAT----T-TTTCATTTATAT------TACCAAAAACA-G--CAA--T----AAAATACA-TGA-GGGTGAGT---TGA-----GTTTT-T-T--------actataatttctaccggtactgatccatgttatttttttaatat
gi|7 : cGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-GTAAGG-CCA--ATT--TT-CTC--C--AA-AT---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATGGA-TGA-GA--GTGG---T-A-----TTTTT-TAA--------AA--TC-CAGAA-TT--------G---TCAA-----------AAAAAAAAAACCAACAA-AA---------------AA-A--CTTTCAACATAA---ATGCTTTCTAAGTGGATCATAAGCACTAAAGATTTTCATTTATTTgggaaagaaaactttttaaaggttctaagtaggacgatgccaattcataatcactttcccatatcttgtggggagatcacccacgattcatatcgcacccataagatttgagccttgtggatcatcctcgaaccgaggactgcaaggagtctctgtaccataaataa
gi|8 : CA-TATAAAATT--AA-T-TC-TCCG------GTT-TTCAGG-CCA--ATT--TT-CTCAAC--AATAA---CAACAAATTATTAAAAAAAAAAACCA---GATG-AGGGAGGAAGGC------------------------TTTTTA-------------------G--TAA--T----GAAATAGA-TAA-GG--GAGGAACT-A-----TTTTT-T-TTTATTTTAAA--TC-CAGAACTT--------G---CCAGATAACAATTTCAGA------------GATTA---------------AA-G--TTCTG----TAA---CTG------AA-----TCTTAAACATAGTAGACTTTCCATTATCTGGGTCAT------------cgccttataatgtaaattagaatttgcctcatcggaaacctggatctgaggaagactggatagtgctaa
gi|9 : GGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AATT-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--TAATAAAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TTGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----ACAAAAGTAATGAAGATTTTCCTTTATTTGcaacaacagaatttaatgcttgtggactgcataattctgaatac
blockSeqs : T TA G G G CACCCT T G AT GA T CCA T CAACAAATTATTAAAAAAAAAAACC TTT A ATTTTTGAAT A TACCAAAAAC T GT AT AATA A T GT AAC G ATTTT A TTTATTTTA GG T CGCTGCAC AAC AAAAAAACAACTTTAAATATAA T AC AACA CCG CTTTCT GTGGA A CTAAGATATAAT ATTGTA T CG AACACAGGC NNNNNNNNNNNNNNTA T G C C CG CGT T CTTG TAATGAT . . GAAAAACAAA CG T TTAATT . A TAAACTGT ACGT A . A . GTTGGA TG TA AG C . C T . AAT TC AA . T T A . T A . T A . G . . TG . A AC . . A CA C . CG . A . . .
blockSeqs : . . . . . . . . . . . AAC . TTTT . . CTATTTAGAT . GATGGGT . C T G . . . . . T . TTA . . A . AAAAAAAAAACCAACAAAA . . G . . AT A CTACAATAGAAT ATTGTA T . . . T G . . . . . . TATGA . . GA . . TTA . . TAATTTA ACT A . . . TTG . . AA . . . . . AT T . . . . . . . . . .
blockSeqs : . . . . . . . . . . . A . GT . . AATGTTTT . T . . . . . . . . . T . AA . . . . ATAACAATTTCAGAGATTA . . . . . . C . A A . . . A A . . . . . . TATAA . . A . . TA . . CGTTTT AC
blockSeqs : . . . . . . . . . . . C . C . . AATTTTTT . T . . . . . . . . . . . AA . . . . AAGGGGCGGGGAAA . . . . . . C . . . . . . . A . . .
blockSeqs : . . . . . . . . . . . A . C . . ATTTTTT . T . . . . . . . . . . . T . . . . AAGAAAA . . . . . . C .
blockSeqs : . . . . . . . . . . . C . C . . TTTTTAT . T . . . . . . . . . . . T . . . . GGGGAAA . . . . . . T
blockSeqs : . . . . . . . . . . . G . T . . ATTTTTC . C . . . . . . . . . . . T . . . . . . . . . A
blockSeqs : . . . . . . . . . . . C . T . . AATTTTT . T . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . C . C . . ATTTTAC . T . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . C . C . . ATTTTAT . T . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . C . C . . ATTTTA . T . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . C . C . . TTATT . T . . . . . . . . . . . T
blockSeqs : . . . . . . . . . . . C . C . . TTT . .
blockSeqs : . . . . . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : AAGAAAAAACAAA*********************************
originalCons : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGG-----------GGG------------GA-AA---------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTTG--TGTTT-------CGAACAAT---CTAAGGATCT-A-T-GATAGG--T-TCAT--AATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
finalCons : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT--------G---TCGGAAGAAAAAACAAA---------------------------------AA-G--TTCTC----TAA---GTG------AA-----TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTCAT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTTG--TGTTT-------CGAACAAT---CTAAGGATCT-A-T-GATAGG--T-TCAT--AATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGATAAAACAGAGAAAAATCACTGTAATCTTAAGAATACTAAGGACTTCTGATTGTTAGTATTATTATAAAAATTTAAGCTAGTGGACAGCGTCCATCTG
Unaligned ( gi|19 ): TTACCTTAAAATAATAGTTTACAAGCATAAGTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222 22222222222222222 1111111111111111 11111 1111111111 4444444444444444444444444444444444444444444444444444444 55555555555555555555555555 11 333333333 5555555555555555 11 111 1 2222 555555555555555 111 1 444444444444 11 1 22222222 1 1 2222222222222 111111 1 1 444444444 333 22 11 11 55555555 1 222 22222 2222 11 11 1 1 1 11 222 1 1 1 1 222 11 1 1 2222222 333333 222 11 222
lowQualScore : 2 33 2 2 2 666666 2 2 33 33 2 77777 2 8888888888888888888888888888 444 2 00000000000000000 2 3333333333333333 3 77 77 9999 3 3 44 555 3 33333 3 6666666666 55 3 7 3 666 6666666666666666666666666666666666666666666666666666666 77 5 888 66 0 1 00000000000000000000000000 0 0 6666 1 11 222222222 3333333333333333 6 1 8 8 0 11 777 0 1111 666666666666666 777 0 333333333333 33 0 22222222 0 0 9999999999999 444444 7 3 7 3 222222222 444 55 11 6 88 55555555 2 333 22222 2222 88 88 3 7 7 3 7 2 88 7 88 000 5 5 5 22 5 1 22 111 88 1 22 5 5 7777777 000000 1 111 88 000
lowQualScore : . .. . . . ...... . . .. .. . ..... . ............................ ... . ................. . ................ . .. .. .... . . .. ... . ..... . .......... .. . . . ... ....................................................... .. . ... .. . . .......................... . . .... . .. ......... ................ . . . . . .. ... . .... ............... ... . ............ .. . ........ . . ............. ...... . . . . ......... ... .. .. . .. ........ . ... ..... .... .. .. . . . . . . .. . .. ... . . . .. . . .. ... .. . .. . . ....... ...... . ... .. ...
lowQualScore : 2 11 2 2 2 444444 2 5 44 44 5 88888 5 1111111111111111111111111111 444 5 11111111111111111 5 4444444444444444 1 33 33 6666 1 1 22 444 1 88888 1 5555555555 00 6 3 6 444 3333333333333333333333333333333333333333333333333333333 99 0 888 99 8 0 33333333333333333333333333 8 8 8888 0 00 000000000 0000000000000000 0 4 0 0 8 00 555 0 2222 555555555555555 555 0 555555555555 88 0 88888888 0 0 0000000000000 222222 3 3 3 3 000000000 000 33 00 7 33 33333333 0 333 00000 7777 33 33 3 3 3 3 3 0 33 3 33 555 0 5 5 00 5 0 00 555 55 0 00 0 5 5555555 000000 0 000 55 555
consensus : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT-GTC-G---GAA----G-----AAAA---C----AAC----A-A--AAA------------------G--TTCTC-TAA---GTGAA--TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTC------------AT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTTG--TGTTT-------CGAACAAT---CTAAGGATCT-A-T-GATAGG--T-TCAT--AATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
Reference ( family-2 ) : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT-GTC-G---GAA----G-----AAAA--------AAC----A-A--AAA------------------G--TTCTC-TAA---GTGAA--TCAAAAGCANTGAAGATTTTCCTTTATTTGAGTC------------AT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTA-----ATGTATATTTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-A---AGAA-AAGG-GTAC--TAATATT--ATTATTCAA-A-C-TACCATTA-ATTTAA-ACT-GTTGGAG-GTTTTTA-T-AAGATC-TTAATAATAGTGCGTTG--TGTTT-------CGAACAAT---CTAAGGATCT-A-T-GATAGG--T-TCAT--AATCA--AGA-TTACATTGAGAA-TTCAATCTATTGATTTCAG--TCAGATTAAATNTTGCTGAGAGTGTACACTATAGCNNTTAGGAGTTCATGTNATANNATAATTACAAAATCNAGCNNATCATTTTATTTTCTTTATCCGTTTTTTGAATATAAACCAGNATTGACTAAGGGTTCAGGGGATACTTA
gi|1 : AGGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AA-T-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT-GTC-G---GGG----G-----GAAA--------A-------------A------------------G--TTCTC-TAA---GTGAA--TAAAAAACAATGAAGATTTTCCTTTATTTGAGTC------------AT------------TTGAAGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGCCTTGAACTGATTCA--TTTTG---------AACACAAGCAATAT----------------TGATTTT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACTACTTTTATGTTTATTTATTTAAATGTTAAAGGTATTG--------ATTTGTAGG--GTAT-CTATAA---AGAATAAGG-GCTCCATAATATTAAATTAGTCAATATC-TACC-TTATGTTTAATGCTCATTAAAGAGTTTTTGTT-AAGATC-TTAATAAT--TACGTGGTTTGTTTGATTACCTGAACAATGGAATAAGGATCTCA-TAGATAGGAAT-TCAT--AATCAATAGA-TTAGATTGAGAATTTCAATCTATTGATTTCAGATTCAGATTAAATTTTGCTGAGAGT-TACACTATAGCATTTAGAAGTTCATGTTATATAATAATTACAAAATCTAGCATAT-ATTTTATTTTCTTTATCTGTTTTTTGAATATAAACCAGTATTGACTAAGGGTTCAGGAGATACTTA
gi|10 : AGGCCATCA-AAAATT--AA-T-TA-TCTG------GTT-CTCAGG-CCA--ATA--TT-TTC--------AATTTT------------------------T---GATG-AGGGAGGGAGGC-AT-T-TTT---T----T-TTTCCTTTTTAT------T---------G-C--CAA--TG---AAAAT-GA-CGA-GG--GAGG---C-T-----TTTTT-T-T--------attt
gi|11 : cacattaaccaatacacagcatacagtggacatgaatattcagttAGGCCA-CATAAAATA--AA-T-TG-TCTG------GTT-CTCGGG--AA--ATTGATT-TTG--A--AA-AAG--T------------------------G---GGT--AGGTAGGTAGGG-T--T-TTTA--T----T-TTTTGTTTTTAT------T---------ttgaacaaatgattta
gi|12 : taCCA-CAATAAATT--AAGTGTC-TCTG-------TT-CTCAGG-CCA--ATT--TC-TTC--C--AA-AA---C------------------------A---GATGAAGGGAGGGAGGCAA--TGTTT---T----T-TTTCATTTTTAT------T---------GTGGTCAAT-T----AAAATAGA-TGA-GG----AG---T-A-----TTTTT-T-T--------AA--TC-CAGAACTT-GTC-G---Gtcccgaagagcgagggtagggattgctattgaaagctagtgtatccaaaactaagatttcaagtaagacgttttaaaaaaaaaaataaa
gi|13 : GGCCA-TATAGTATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--GTT--TT--TA--A--AA-AA---C------------------------A---AATG-AGGGAGGGAGGC------------------------TTTTTAT------T---------T-G--CAG--T----GAAGTAGA--AA-GG--GAGG---C-A-----TTTTTAT-TTA------AA--TC-CCGAACTC-ATCAG---GAA----
gi|14 : CA-TGTAAAATT--AA-T-TT-TC-G------GTT-CTCAGT-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GAT-----AAGGGAGGC----T-TAT---T----T-AATCATTTTTAT------C---------A-G--CAA--T-----AAATGGA-TGA-GG--GAGA---C-A-----TTTTT-TAA--------AA--TC-CCAAACTC-ATT-G---GAa
gi|16 : GGCCA-CATAAAATA--AA-T-TTGTCTG------GTT-CTCGGG-GAA--ATT--GA-TTT--G--AA-AA----------------------------A---G-T--AGGTAGGG-----------TT---T----T-TTTAATTT
gi|17 : GGCCA-TGAAAAATT--AA-T-TA-TCTG------GTT-CTTGGG-CCA--TTT--TT-TTC--------AA---T------------------------ATTTGACG-AGGGAGGTGGGT-A--T-TTT---TC---C-TCTTGTTTTcccaaagagtgagggtagggatt
gi|18 : CCA-CATAAAATT--------C-TCTC------GTT-CTTATG-CCA--ATT--TT-CTT--C--AA-AA---T------------------------A---GATG-AGGGAGGCAGGaa
gi|2 : GGAGGAAGCA-A--T-TTT---TGAATT-TTTCATTTTGGTGATGGGT---------G-G--CAAATT----AAAATAGAATGATGG--GAGG---T-AATTTTTTCTT-T-T--------AAGGTCTCAGAACTTCGCT-GCACGAACCCGG-----AAGG--------GGCGGGGA-A--AAAT-----------------GACTTCTCGTAACCGGTGAAATCCAAAAGCAATGAAGATTTTCCTATATTTGAGTC------------AT------------TTGAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCACGTTTTGAACACAGGCAACNNNNNNNNNNNNNNNNNNNNNNNNNTATGATTGTCTACACTGTATATCGTGATTAGCGTG-TTCTGCTTGATGAACTA-----ATG---ATTTA---AAAAG-TAAAGGTATT---------A--TGTAAGCGGTACTCT-T-A---GAAC-AAGGAGTAC--TAA-ACT--GTTATTCAA-A-CGTACCATTA-ATTTAA-ACT-GTTGGA----TTTTA-TGAAGATTATTAATAATAGTGCGTTG--TGTTT--------GAATAAT---CGAAGGATCT-AAT-GATAGG--TCTCAT--AATCA--AGATTTACA-TGAGAA-TTCAATCTATT-ATTTCAG--TCAAATTAAA-ATTGCT---AGTGTAC-CT-TAGTTGTTAGGAA-TCATGTAATAACATA---ACAAA--CAAGCCAATCATTTTA-TTTCTTTA--CG---TTTGAAT------CAGAA---ACT--GGGTTC---GGATACTTA
gi|20 : aAGGCCA-AATAAAATT--AA-T-CA-TCTG------GTT-CTCAGgct
gi|21 : AGGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-C
gi|3 : t-CATAAAACTTAAA-T-TC-TCTGCACCCTGTT-CTCAGGGCCA--ATT--TTTCTC--CCAAA-AA---C------------------------A---GATG-AGGGAGGGAGGCAA--T-TTT---T----T-TTGCATTTTTAT------T---------G-GC-CAA--T----AAAATAGA-TGA-GG--GAGG---T-A------TTTT-T-T--------AA--TC-CAGAACTTAGTC-G---G
gi|3 : cac-TAA---GTGAA--TCAAAAGCAATGAAGATTTTCCTTTATTTGAGTC------------AT------------TTAAGGCCTGGTCATCTGGACTGGAGACTGCAGAACACTTGTGTAAATTGTACATGTATATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGATTGT-TACA-TGTATAT--TGATTAG---G-TTCTG----ATGAACT------ATG-A---TTA---AAAAG-TAAAGGTATTG--------A--TGTAGG--GTAC-CT-T-AATTAGAA-AAGG-GTAC--TAAT-TT--A--ATTCAA-A-C--AACATTA-ATTT-A-ACT--TT---G-GTTTTTA---AAGAT--GAAATAATAATG-GTTG--TGTTT-------CGAA-AAT---CTGAGGATCT-A-T-GATAGG--T-TCATAAAATCA--AGA-TTACATTGAG-A-TTCAATCTA-TAATTTCAG--TCAGA-TAAATgggggggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatattaagtgaatcaaaagcaatgaagattttcctttatttgagtcatttaaggcctggtcatctggactggagactgcagaacacttgtgtaaattgtacatgtatataattgtcttgaactgattcattttgaacacaggcaatattgattgttacatgtatattgattaggttctgatgaactatgattaaaaagtaaaggtattgatgtagggtaccttaattagaaaagggtactaatttaattcaaacaacattaatttaactttggtttttaaagatgaaataataatggttgtgtttcgaaaatctgaggatctatgataggttcataaaatcaagattacattgagattcaatctataatttcagtcagataaatgc
gi|4 : caccataaaacttaaattctctgcaccctgttctcagggccaatttttctcccaaaaacagatgagggagggaggcaattttttttgcatttttattggccaataaaatagatgagggaggtattttttaatccagaacttagtcgggggggggggggggagcaatgcgcgagcccagtgcgccgaacgggttggacaagtatat-CATAAAATT--AA-T-TC-TCTG------ATTTCTCGGG-CAA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAAGGAGAC-A--T-TTT---A----AATTTCATTTTCAT------T---------G-G--CAA--T----AAAATAGA-CGA-GG--AAGG---T-A-----TCTCT-T-T--------AA--TC-CAGAACTT-GTC-G---AAA----A-----AAAACAACTTTAAAT----ATA--AAA------------------G--TTATC-AAA---GTGAA--CTAAAATCACTGAAGATTTTCTTTTATTTGAGTC------------ATCTAAGATATAATTTAAGGCCTGATCATCTTGACTGGAGACTGCAGAAC---TGTGCAAA--------ATACATAATTGTCTTGAACTGATTCA--TTTT----------AACACAGGCAATAT----------------TGA-TAT-TACA-TGTATAT--TGATTAA---GTTTCAG----ATGAAC----------TATAATTA---AAAAG-TAAATGTATTGAAAAACAAA--TATAGA--GTAC-C--T-A---AGAA-AAGG-GTAC-----CGTT--TTTATTCAA-A-C-TACgc
gi|5 : AGGTCA-CACAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--C----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------TA--TC-CAGAATTT-GTT-A---AAA----GAAAAAAAAA--------AAC----A-A--AAAAAAACTTTCAACATATATG--TTTTC-CAA---GTGAA--TCGTAAGCACTGAAGATTTTCCTTTATTTGAGTCATCTACAATAGAAT------------TTGAGGCCTGGTCATCTGGGCTGGAGACTGCAGAACACTTGTGTA------ACAAATGCATAATTGTCTTGAACTGATTCA--TTTTG---------AACACAGGCAATAT----------------TGAATAT-CACA-TGTAT-C--TGATTAat
gi|6 : taCCA-CATAAAATT--AA-T-TG-TTTG--------T-C---GG-CCAATATT--TT-TTT--C-----AA---C------------------------A---GATG-A-GGAAGGAGGT-C--TATTTAGAT----T-TTTCATTTATAT------TACCAAAAACA-G--CAA--T----AAAATACA-TGA-GGGTGAGT---TGA-----GTTTT-T-T--------actataatttctaccggtactgatccatgttatttttttaatat
gi|7 : cGCCA-CGTAAAATT--AA-T-TC-TCTG------GTT-GTAAGG-CCA--ATT--TT-CTC--C--AA-AT---C------------------------A---GATG-AGGGAGGGAGGC-A--T-TTTA--T----T-TTTCATTTTTAT------T---------G-G--CAA--T----AAAATGGA-TGA-GA--GTGG---T-A-----TTTTT-TAA--------AA--TC-CAGAA-TT-GTC-A---AAA----A-----AAAAAAACC---AAC----A-A--AAAAACTTTCAACATAAAT--G--CTTTC-TAA---GTGGA--TCATAAGCACTAAAGATTTTCATTTATTTgggaaagaaaactttttaaaggttctaagtaggacgatgccaattcataatcactttcccatatcttgtggggagatcacccacgattcatatcgcacccataagatttgagccttgtggatcatcctcgaaccgaggactgcaaggagtctctgtaccataaataa
gi|8 : CA-TATAAAATT--AA-T-TC-TCCG------GTT-TTCAGG-CCA--ATT--TT-CTCAAC--AATAA---CAACAAATTATTAAAAAAAAAAACCA---GATG-AGGGAGGAAGGC------------------------TTTTTA-------------------G--TAA--T----GAAATAGA-TAA-GG--GAGGAACT-A-----TTTTT-T-TTTATTTTAAA--TC-CAGAACTT-GCC-A---GAT----A-----ACAATTTC----AGA----G-ATTAAA------------------G--TTCTG-TAA---CTGAA--TCTTAAACATAGTAGACTTTCCATTATCTGGGTC------------AT------------cgccttataatgtaaattagaatttgcctcatcggaaacctggatctgaggaagactggatagtgctaa
gi|9 : GGCCA-CATAAAATT--AA-T-TC-TCTG------GTT-CTCAGG-CCA--ATT--TT-CTC--C--AA-AA---C------------------------A---GATG-AGGGAGGGAGGC-AATT-TTT---T----T-TTTCATTTTTAT------T---------G-G--CAA--TAATAAAAATAGA-TGA-GG--GAGG---T-AT----TTTTT-T-T--------AA--TC-CAGAACTT-GTT-G---GGG----G-----G------------------A-A--AAA------------------G--TTCTC-TAA---GTGAA--ACAAAAGTAATGAAGATTTTCCTTTATTTGcaacaacagaatttaatgcttgtggactgcataattctgaatac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGATAAAACAGAGAAAAATCACTGTAATCTTAAGAATACTAAGGACTTCTGATTGTTAGTATTATTATAAAAATTTAAGCTAGTGGACAGCGTCCATCTG
Unaligned ( gi|19 ): TTACCTTAAAATAATAGTTTACAAGCATAAGTAT