lowQualScore : 1111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4 99999999999999999999999 2 11 2 1 1 55555555555 1 22222 1 1 1 1 1 1 3333333 55555555 333333333 222 33 4444 4444 1 11 2 1 444 1111111111 1 5555555555555555555555555555555555 1 1 66666666666666 1111 222222222 222 1111 222222 1 666 11 1 222222222 111111 11111 2 666666666666 33333 11 1111111111 111111 11111111111 111 11111111111 1111111 33333333 333333333333333333 11 1 444444444444444 11 111 111111 2222222222 222 111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 111 6666 444 3333333 11 333333333333 1 222222 1 11111
lowQualScore : 0 66666666666666666666666 7 66 0 0 0 3 44444444444 0 55555 0 0 0 5 0 2 0 3 3 6666666 1 0 22222222 333333333 222 55 4444 3333 0 33 8 6 9 99 0 3 6 111 6 3 3 9999999999 9 44 666 0 5 8 2 6 2 0 0000000000000000000000000000000000 3 0 5 0 0 5 44444444444444 1 5555 77 5 5 6 555555555 333 99 3 7777 3 5 111111 2 3 0 222 5 5 33 888 5 0 5 5 888 5 5 3 000000000 888888 0 33333 5 5 5 5 777 4 4 66 4 5 666666666666 4 3 55 3 11111 6666 00 6666666666 4 0 4 000000 0 4 33 4 8888 44444444444 4 4 77 4 4 99 111 88 4 4 9999 2 99999999999 777 0 1 3333333 11111111 0 9 6 222222222222222222 777 66 44 6 22 0 2 000000000000000 66 88 111 4 222222 5 0 2 3333333333 888 5 222 5 5 5 5 111111111111111111111111111111111111111111111111111111111111111111111111 5 5 0 66 0 0 7 888 3 999 4 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 8 2 8 777 0 3 3333 3 8 3 888 5 9999999 8 8 0 11 0 3 333333333333 3 99 7 6 444444 1 44444 6
lowQualScore : . ....................... . .. . . . . ........... . ..... . . . . . . . . . ....... . . ........ ......... ... .. .... .... . .. . . . .. . . . ... . . . .......... . .. ... . . . . . . . .................................. . . . . . . .............. . .... .. . . . ......... ... .. . .... . . ...... . . . ... . . .. ... . . . . ... . . . ......... ...... . ..... . . . . ... . . .. . . ............ . . .. . ..... .... .. .......... . . . ...... . . .. . .... ........... . . .. . . .. ... .. . . .... . ........... ... . . ....... ........ . . . .................. ... .. .. . .. . . ............... .. .. ... . ...... . . . .......... ... . ... . . . . ........................................................................ . . . .. . . . ... . ... . ........................................................................................... . . . ... . . .... . . . ... . ....... . . . .. . . ............ . .. . . ...... . ..... .
lowQualScore : 0 88888888888888888888888 8 55 0 0 0 2 55555555555 0 00000 0 0 0 5 0 5 0 5 0 5555555 2 2 00000000 888888888 555 33 7777 5555 0 88 0 7 0 22 0 3 7 333 7 5 5 3333333333 0 66 666 8 4 0 2 0 5 2 8888888888888888888888888888888888 2 8 0 8 6 6 66666666666666 0 9999 99 7 7 0 555555555 333 22 5 3333 2 0 222222 4 8 2 000 0 0 88 888 0 5 0 0 888 0 0 4 000000000 000000 8 66666 0 0 0 0 888 5 4 99 1 0 666666666666 0 6 00 6 55555 9999 00 5555555555 0 7 0 666666 7 0 22 0 5555 44444444444 0 0 00 0 0 55 000 11 0 0 6666 5 11111111111 000 8 6 0000000 66666666 9 8 9 888888888888888888 888 11 77 0 22 5 5 222222222222222 99 66 999 4 888888 0 4 0 2222222222 888 0 555 0 0 0 0 444444444444444444444444444444444444444444444444444444444444444444444444 7 7 1 99 1 4 4 888 4 222 4 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 8 2 222 8 2 2222 0 0 0 000 0 0000000 0 2 8 00 6 8 000000000000 2 22 0 7 333333 4 33333 7
consensus : NGGGGTTAACAATTTC-CAATACTGGGTC-TC---CA--TATAGC-ATTTACAATN-AAATA-TTTCATTATGCT-GTAATCTGCATCG---ATGATA-AATTGG-ACAAT--AAAGA-ACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-CGGCANGTANGT-G--T-TTTTTAAGGAA-CACATTGGTCTAGA----ATG--ATATAT-C-TCCCGTTTC-AATATGCAACGTATCGGCAC-TAATTCTTA--ATTTG-G--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAA-TG-TAAGTA-GTCTT-GCAATTTTTACTA------TAT-CATTATTATTAAATAGAGATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGT-TGT-TA--TGT---ATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACA-TACATTTT--GGAAA-ATAC-TTTTTAA-AAT-A---TGTTCT-AAAT--CAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACNTTCGTCTT--TT-TC-TGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ACTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--C--TCA----TTCTT-TTAGCTGAGCA-T--GG-AC-AT--TTG---GGTACC--CAA--------G-TTCAGCTAAT-CTGGATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TACC------ACAA-AT-CTTA-CT-ATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGA----------CAA---TAATGAA-------TCCATA--------TTTTTTGACGA------------------GCA---TTG--TC-TTTTGGNAAACC--AAAACATGACACAT-TTTTATCTACA-TTTGAAGAG--GTAGAACAATT-ATAAACCAC-ACA------GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GA--------------------------TT-------------------------ATT-GC-ATGGACTCTAAAACCATTAGTGCCAAT--TAACAAGATTTGTT---TGCTTTTG-A-TAATA--G-AT-------A----------CTCTGCA-----GCTGGC------A--TCACATCTG-------AC-GTCA---C-G--------CCGAA-GGTTTCCGATCTTAGAAGGCTTCAGATATGCAT--ATTGAGG-TCACGCGTCTTATCAGCTCA-TT-GANACA-GCAATAGCTTT--GAAACAGATGGAA--A---GT-A--TGGGGAAAANTGCGCAGGGATGTTATCACAT-ACATA------TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( gi|1 ) : AGGGGTTAA-AATTTCGCAATACTGGGTTTTCTTTCA--TATAGCTATTTACAATC-AA-TA-TTTCATTATGCT-GTAATCTGCATCG--TATAAT--AATTGG-ACAAT--AATGA-ACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGT-G--T-TTTTTAAGGAAGCACATTGGTCTAGA----ATA--ATATAT-C-TCCTGTTTCAAATATGCAACGTATCGG-ACTTAATTCTT---GTTTG-G--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGG-AAA-TG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTATATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAG----------TAT---ATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACA-AACATTTT--GGAAA-ATAC-TTTTCAA-AAT-A---TGTTCC-AAAT--CAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACATT-TC-TGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCAT-AC-GTCAG-TGTTCTT-TTAGCTGAGCA-T--GG-AC-AT-ATTG---GGTACC--CAA--------G-TTCAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TATC------ACAA-AT-CTTG-CT-ATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGA----------CAA---TAATGAA-------TCCATAT-------TTTTTTTATGA------------------GCA---TTG--TC-TTTTGGTAAACC--AAAATATGACACATATTTTATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAAATCTC-ACA------GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GA--------------------------TT-------------------------ATT-GC-ATGGACTCTAAAACCATTAGTGCCAAT--TAACAAGATCTGTT---TGCTTTTG-A-TAATA--G-AT-------A----------CTCTGCA-----GCTGGT------A--TCACATCTG-------AT-GTCA---CTG--------CCCAA-GGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTGAAG-TCACGTGT-TAATCACCTCA-T--GATACA-GCAATAGCTTT--GAAACAGATGGAA--A---G--A--TGGGGAAAACTATGCAGAGTTGTTATCACAT-ACATA------TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|3 : GGGGTTAACAATTTC-CAATAC-------------A--TATAGC-ATTTACAATA-AAATA-TTTTATTATGCT-GTAATCTGCATCG---ATGATA-AATTGG-ACAAT--TAAGA-ACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGG--TATTTTTAACGAA-CCCA-TGGTCTAGA----ATG--ATATAT-CTTCCTGTTTC-AATAGGCAAGGTATCGGCAC-TAATTCTT---AATTATG--TTAAGATT-GATCT-TTCTGA-CTTTTT--AATGGAAAA-TG-TAAGT-AGTCTT-GCAATTTATACTA------TAT-CATTATTATTAAACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGTGTTTA--TAT---ATTCACAGC----TGGC-AATTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACA-TACATTTT--ATAAA-ATACTTTTTTAA-AAT-A---TGTTCT-AAAT--CAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCT--TTT-TC-TGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCAT-AC-GCCAG-GGTTCTT-TTAGCTGAGCA-T--GG-AC-AT--TTG---GGTACC--CAA--------G-TTCAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TACC------ACAA-AT-CTTG-CT-ATG-CTT--GTCA---CAATA-CAA-T-TCT-T-----------------CAA---TA----------------------------TTTTTA--A------------------AAA---TTG--TC--TTTGGTAAACC--AAAACATGACACAAATTTTATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAAACCTC-ACA------GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GGT-------------------------TT-------------------------ATT-GC-ATGGACTCTAAAACCATTAGTGCCAAT--TACCAA
gi|2 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATAGC-ATTTACAATTAAA-TA-TTTCATTATGCT-GTAAACTGCATCG---GTAATA-AATTGG-ACAAT--AAAGA-ACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGT-T--T-TCTTTAGGAAAA------GGCCTAAG----A------ATAT-C-TCCCTTCTTCAATATGTAACGTATCGGCAC-TAATTCTTA--ATTTG-G--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAA-TG-TAAGT-AGTCTT-GCAATTTTTACCA----------CATTATTATTAGAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAG----------TGTGTCATTCA---CTTC-TGGC-AATTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACG-TACATTTT--GGAAA-ATAT-TTTTTAA-TAT-ATCTTGTTCT-ATAT--GAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCT--TTT-TC-TGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCAT-GC-ATCA---GCTCTT-TTATCTGAGCA-C--GG-TC-AT--TTG---TGTACC--CAA--------G-TTCAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C------------------T-CTTC-CT-ATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGA----------CAA---TAATGAA-------TCCATA---------TTTTTTATGA------------------GCA---TTT--TC-TTTTGGTAAACC--AAAGCATGACACAT-------------TTTGAAGAG--GTAGAGCAATT-ATAAACCTC-ACA------GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAGA--------------------------TT-------------------------ATT-GC-ATGGAATCTAAAACCA--------AA-------AAGATCTGTT---TGCTTTTG-A-TAATA--G-AT-------------------------------CTGAC------G--TCACATC-G-------------------------------AA-GATTTCAGATCTTA-AAGGCTTCAGATAT--GGATATTGAGG-TCATGCGTCTTATTACCTTATT--GATACA-GCGATAGCTTT--GACACAGATGGAACGA---G--A--TGGGGAAAACTacttaa
gi|11 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAACAATTTCATAA---------------CA--TATAGC-ATTTACAATC-AAATAGTTTCATTATGCTTGTAATC-GCATCG---ATGATTAAATTGGTACAATTTAAAGA-ACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGT-GGGT-TTTTTAAGGAA-CACAT-GGTCTAGA----ATACAATATATTC-ACCTGTTC--AATATGCAACGTATCGGCACTGAATTCTTA--ATTTG-GGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAA-TG-TAAGT-TGTCTTGGCAATTTTT-CTG------TATCCATTATTATTA
gi|10 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgGGATTAACAATTTTCCT-TATTGGGTCATCA--CAAGTATATGTGTTAACATTA-AA-TA-AATCATTATACT-GCCATCTGCATTGCTCATACT----TTGA-ACAAT---ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG-------TTTGTATGTA---ACATTATTGTAGACTTTATG--ATATGT---TCC
gi|16 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaTAATTCTCTCAATTTA-G--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGG-AAA-TG-TAAGTA-GTCTT-GCAATTTTTTCTA------TAT-CATTAT--TTGCA-AGTGGTCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|4 : ggcacATT-GATCT-TTCTGACTTTTTT--AATGG-AAAATG-TAAGTA-GTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTGAATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATACATGT---ATTCACAAC----TGGC-AATCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACA-TACATTTT--GGAAA-ATAC-ATTTTAA-AAT-ATGTTGTTGT-AAAT--CAAAATAACAT---GTATGTTT-AAAA------TAATTACCT-T--------------TT-TC-TGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---tgccatcacaatatattt
gi|8 : T-TTCTGAC-TTTTT--AATGG-AAAATGATAA-TA--TCTT-GCAATTT--ACTA------TAA-TTTTATTACTA-ATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC-----TGG----------GAT------CACA-CT--------AATTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAA-A-AACATTTT--GGTAA-ATGC-TTTTTAA-AAA-A---TGCT-----GTTGTAATATAAAA-----TATG--T-AAAACC----TTATTACTGTTAACATCGATCT---TT-TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGTTAGA-C----C-TTCA----TTCTT----ACTGA-CA-C--GG-AT-----TTG---GGTACC--CAA----------TTCAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|25 : AATTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA----ACATTTT--GGAAA-ATAC-Tacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : ctgac--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATAT-TTTTTAATAATTA---TGTTTCTAAAT--CAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCT---TTGTC-TGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTTC-CC--ATGAT-ATATCAGGTACAACATAACGGTCAG-TACTTTT-TTAACTGAGCATT--GG-AC-AT--TTGGCCGGTACCCTCAA--------GTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATACCTTTTAAACAAGAT-CTTG-CT-ATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGGTTGCACTTTTCAAATTTAATTAAGTGGTGTCCCATTTACACACCTTGTTTTATGA------------------GCACTCCTG--GT-TTTTGGTAAACC--
gi|7 : AACTATAGCA-TACATTTG--GGAAA-GTTT-TTTTTAA---T-C---TGTTCTTAAAT--CAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCTTAAAT-TC-TGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT-----TTA----TTCTT-TTAGTTAAGCA-C--GG-GC-AT-TTTG---GA-ATT--TGA--------G-TTCACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT-------------------------------ACAA-AC-CTGG-GTAATC-GTT--ATCA---CAACA-AAA-T-----------------------CAA---TA---AA-------TCCATA--------TTGTTTGACGA------------------GCA---TTG--TC-TTTTGATAAAAC--AAAA-ATAACA-----------------TTCAAAAG--GTAGAACAATT-ATAAACCAC-ACA------ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--GT--------------------------TT-------------------------ATT-GC-ATGGGCTTTAAGACT----------AC--TAACTAG----------TACTTTTG-A-TAGTA--G-ATGAGATTAA----------CTTAGCATCATTGTTGGTTGAAAGA--T-ACATCAGCTTTAAAATAGTCAAGTCCGATGTCATTCCGAACGGTTCC-GATCTT-GGGGGCTTCAGA-ATACAT--ATTGAGG-TCACATGTCTTATCACCTCA-------ACA-GTAAC-----------ACAGATGG-A--A---GTCG--TGGGGGAAATCA--CAAAGATTTTATCACAG-ACATA------TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|5 : T-AAGA------TAGTTACCTCTAACTTTCGTCTT--TT-TC-TGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTA-CC--ACGGG-ATGTCAGGCACAGCAT------C-----TTCGT-TTAGCTGAGTA-T--GG-GC-AT--TTG---G-TACC--CAA--------G-TTCAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TACC------ACAA-AT-CCTA-CT-AGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-----------AA---TAATGAA-------TCCATA--------TTTTTTGACAA------------------GCA---TTG--TC-TTTTGGAAAACTAAAAAAAATGACACAT-TATTATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAAACCAC-ACA------GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--GATTTCTAAGCTTATACTAAAATCATGTTT-------------------------ATT-CC-ATGGACTCTAAAACCATTAGTGCCAAT--TAAC-AGATTTGTT---T--TTTTG-A-TAAAA--G-AT-------
gi|6 : -AAGA------TAGTTACCTCTAACTTTCGTCTT--TT-TC-TGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTA-CC--ACGGG-ATGTCAGGCACAGCAT------C-----TTCTT-TTAGCTGAGTA-T--GG-GC-AT--TTG---GGTACC--CAA--------G-TTCAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TACC------ACAA-AT-CCTA-CT-ATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-----------AA---TAATGAA-------TCCATA--------TTTTTTGACAA------------------GCA---TTG--TCTTTTTGGAAAACTAAAAAAAATGACACAT-TATTATCTACATTTTGAAGGA--GTAGAACAATTAATAAACCAC-ACA------GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--GA--------------------------TTTCTAAGCTTATACTAAATCATGTTTATT-CC-ATGGACTCTAAAACCATTAGTGCCAAT--TAACAAGATTTGTT---TGTTTTTG-A-TAAAA--G-AT-------gaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT------CA------TTT-TTAACTGCGCA-T--GA-GC-AT--TAG---TATAAC--CTG--------A-TTCAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CCCC------ACAT-AT-TTTA-CT-GTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGA----------TAG---TAATCTA-------CTTGTGC-------TTTTTTGA-AA------------------AC----CTGCTTC-TTCTGGGAAACA--AAAAC-TAAAA---ATTTTGCCGCT--TTTGAAGAA--CTTGAACAATT-ATAAACAGC-ACA------ATAgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|3 : AT-AT-ATCAGACATCCAT-TCAGATTAGC--T--GA-AC-----TTG---GGTACC--CAAATGTCCATG-CTCAGCTAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttggggttaacaatttccaatacatatagcatttacaataaaatattttattatgctgtaatctgcatcgatgataaattggacaattaagaacaaagtgcatttcgttttcaatgaataatctgcatgtatggcacgtaagtggtatttttaacgaacccatggtctagaatgatatatcttcctgtttcaataggcaaggtatcggcactaattcttaattatgttaagattgatctttctgactttttaatggaaaatgtaagtagtcttgcaatttatactatatcattattattaaacagaaattatgatcttaattgaatttgaatttcagccatatttgtaaatatattttcagtgtagtgtgtttatatattcacagctggcaatttaagcaataaatcataccgaatttaatattttaaaaatgcaaactttaacatacattttataaaatacttttttaaaatatgttctaaatcaaaattacatgtatgtttaaaatagttacctataacatttgtctttttctgtatgttccacgcaatgacaatatttttattggtgtacttttgtactatcattgttggttacccatggtacatcaggtatagcatacgccagggttcttCAA-TATTCTTATTAGCAAAGTT-T--TGTACTATCATTG---AGCACGGGCA-----------TTCAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TACC------ACAA-AT-CTAC-CT-ATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGA----------CAA---TAATGAA-------TCCATAT-------TTCTTT-ATGATATNNNNNNNNNNNNNNNNNN---NNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNCATTTTTTATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAAACCAC-ACA------GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-------------------------TT-------------------------ATT-GC-ATGGACTCAAAAACCATTAGTGCCAAT--TAACACGATTTAATAGATACTTT---A-TA-CA--G-CC-------A----------CTCTGCA-----GCTGAC------G--TCACA---------------------CTG-----------AA-GATTTCCAATCTTAG-AGGCTTCAGATATGCAT--ATTGAGG-TCACGCGTCTTACCAGTTCA-TT-GATACA-GCAATAGCTTT--GAAACATATGGAA--A---G--AGATGGGAGAAACTGCGCAGAGATGTTATCACAT-ACATACGAGTATTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGtgacttggggaaaagtgcttaccacaaatcttgctatgcttgtcacaatacaattcttcaatatttttaaaaattgtctttggtaaaccaaaacatgacacaaattttatctacatttgaagaggtagagcaattttaaacctcacagtacaaccatttctgctattaactgtttagaaacagaatggggtttattgcatggactctaaaaccattagtgccaattaccaaacttaa
gi|15 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgaTGAGGA-TTAGG-AC-A--ATTT-----TAAC--CTA--------A-TTCAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TCCC------ACAT-AT-TTTA-CT-GTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGG----------CAG---TAATAAA-------
gi|12 : cattttactgcacaT-TACC------ACAA-ATTCTTAATT-ACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAA----------CAC---TTATGAA-------TCCATAT-------ATATTTGATGA------------------ACA---TCG--TT-GTTTGG-AAAAC--AAAATA--ACACAT-TTTTATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACAC-ACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--GA--------------------------TT-------------------------aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|8 : CAATA-ATAAA-CTCTACA------CCAA-ACCATTTTTGCGTCACG-TTAA-TA-CT---GATT---TAGACAGCC-G-AAT-G--------------G--AA--------------------------TT-------------------------ATTTGCTATGATAACTAAACCTATTAGTGCCAATACAAACAAGAT-TGTT---TGCTTT---A-TAATA----AT-------ACTTTAACGCGCTCTGCA-----GCT-GC------A--TCA-ATCTG-------AT-tctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|28 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttaAACCATTAGTGCCAAT--T-ACAAGATTTGTT---TGCAATAGTA-TAATA--G-AT-------cctgcttcgtctttccgaggtccc
gi|6 : ATCTTTC---TTCGTTGA-A-TAATACAG-CC-------G----------CTCTGCA-----GCTGGT------AA-GCATATCTG-------AC-GTCA---C-A--------CCGAA-GGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTGAGG-TCACGCGTCTTATCAGCTCA-TTGAAAACG-G-AATAGCTTT--GAAACAGATGGAA--A---GTGA--TGAGGAAAAATGTGCAGGGATGTTATCACAT-ACATA------TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTT
gi|5 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtTTG-AATAATACAGCAC-------G----------CTCTGCA-----GCTGGT------AAGCCATATCTG-------AC-GTCA---C-A--------CCGAA-GGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCA-TTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGA--AAGTG--A--TGAGGAAAAATGTGCAGGGATGTTATCACATTACATA------TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTT
gi|24 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcggGTGATCACAT-ACATAAT----TTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAA
gi|26 : agga-ACATA------TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTAg
gi|27 : ATA------TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|23 ): CAATCCTCGACTCATTTAAGCTAGATTTTTCGCTTGTTATTGATATCTGGGGGTTAAACATTTCCAATACTATA
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 6666666666666666666 11 2222222 11111 222222222 1111 1 1 11 11 222 111111 77777777777777 22222 44444444444444 33333 111 111111 11 111111111 111111 11111 66666666666 111 3333333333333333333 111 1 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 111111 22222222222 11111 11111111111 444444444444444444444444444444444444444444444 11 1 11 333 111111 1 11111
lowQualScore : 2 6 5555555555555555555 8 8 0 1 0 8 8 0 8 1 8 6 8 11 8 8 8 8 2 1 1 3333333 0 8 88888 111111111 8 9999 0 6 11 0 11 6 5 000 5 5 5 5 1 1 666666 77 77 88888 2 6 22222222222222 0 8 99999 6 9 3 33333333333333 3 5 66 5 5 77 00000 5 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 5 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 1 777 2 22222 4 3 44444444444 99 4 4 4 777 55 3 3 1 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 4 4 77 5 4444444444444444444 66 44 1 555 0 4 4 1 333333 55 55 3 3 3 3 7777 4 0 4444444 6 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 000000 5 33333333333 9999 777 22222 0 44444444444 0 4 8 55 1 777777777777777777777777777777777777777777777 11 2 99 6 2 44 3 6 1 99 6 99 333 1 6 444444 66 0 22222 4
lowQualScore : . . ................... . . . . . . . . . . . . . .. . . . . . . . ....... . . ..... ......... . .... . . .. . .. . . ... . . . . . . ...... .. .. ..... . . .............. . . ..... . . . .............. . . .. . . .. ..... . . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . . ... . ..... . . ........... .. . . . ... .. . . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . .. . ................... .. .. . ... . . . . ...... .. .. . . . . .... . . ....... . ... . ... . . . . ........................................................... ...... . ........... .... ... ..... . ........... . . . .. . ............................................. .. . .. . . .. . . . .. . .. ... . . ...... .. . ..... .
lowQualScore : 5 7 2222222222222222222 0 0 8 0 8 0 0 8 0 4 0 0 0 00 0 0 0 0 8 0 0 6666666 8 0 22222 222222222 0 5555 0 0 00 8 00 7 7 333 0 7 7 7 7 7 444444 11 99 55555 5 7 00000000000000 8 2 66666 7 3 2 00000000000000 4 0 99 0 7 44 11111 7 7 7 7 7 000 4 999999 9 6 11 11 22 888 4 3 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 7 000 9 99999 4 4 11111111111 55 5 0 0 000 55 6 6 0 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 4 4 33 4 1111111111111111111 11 77 0 333 2 0 0 0 222222 00 55 6 6 6 8 7777 0 8 7777777 1 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 888888 0 88888888888 4444 888 33333 4 99999999999 9 0 0 55 1 666666666666666666666666666666666666666666666 55 3 22 7 5 00 3 7 0 22 7 22 888 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CAATACTGGGTT-TT-CTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGC-TGTAATCTGCATCG-ATGA-TAAATTGG-ACAA--TAAAGAACAAAGTGC-ATTTCG-TTTTCAATG-AATAATCTGCATGT-ATGACAAGTAAGT--G-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----AT--GATATA-TCTCCC-GT-TTCAA-TATGCAACGTATCGGCACT-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAG-TGTGT-----ATGTATTCACAGCT---TGGCAA-TTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATACTTTT-TAA-AAT-AT--TGTT-CT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCTT--T--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCAG--TTCTTTTAGCTGAGCAC--GGGCA-T-TTGG---GTACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTG-ACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAANATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGC----AGCTGGTA--TC-ACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CAATACTGGGTC-TC-C----A--TATA-GC-ATTTACAATNAAATA-TTTCATTATGC-TGTAATCTGCATCG-ATGA-TAAATTGG-ACAA--TAAAGAACAAAGTGC-ATTTCG-TTTTCAATG-AATAATCTGCATGT-ACGGCANGTANGT--G-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----AT--GATATA-TCTCCC-GT-TTCAA-TATGCAACGTATCGGCACT-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAGATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAG-T-TGT---T-ATGTATTCACAGCT---TGGCAA-TTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATACTTTT-TAA-AAT-A---TGTT-CT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACNTTCGTCTT--T--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ACTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--C--TCA---TTCTTTTAGCTGAGCAT--GGACA-T-TTGG---GTACCC--AAGTT-CAGCTAAT-CTGGATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTG-ACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAACATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGC----AGCTGGCA--TC-ACATCTGACGTCAC-GCCGAAGGTTTCCGATCTTAGAAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGANACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAANTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCAATACTGGGTT-TT-CTTTCA--TATA-GCTATTTACAATCAA-TA-TTTCATTATGC-TGTAATCTGCATCGTATAA-TAA-TTGG-ACAA--TAATGAACAAAGTGC-ATTTCG-TTTTCAATT-AATAATCTGCATGT-ATGACAAGTAAGT--G-T-TTTTTAAGGAAGCA-CATTGGTCTAGA----AT--AATATA-TCTCCT-GT-TTCAAATATGCAACGTATCGG-ACTTAATTCTT--G-TTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGGAAA-TG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAG-T-----------ATATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATACTTTT-CAA-AAT-A---TGTT-CC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATA-CG-TCAGTGTTCTTTTAGCTGAGCAT--GGACA-TATTGG---GTACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGC----AGCTGGTA--TC-ACATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG---ATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCATCAC----AAGTATATGT-GTTAACA-TTAAATA-AATCATTATAC-TGCCATCTGCATTG-CTCA-TACTTTGA-ACAA--TATAATACAAAATGT-TTTTCA-TCTTCAATA-AACAATCTACATGA-ACAGCAAAGACG-------TTTGTATGTAA-CATTATTG---TAGACTTTAT--GATATG-T-TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC---ATA---------A-C----A--TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGG-T-TTTTTAAGGAA-CA-CA-TGGTCTAGA----ATACAATATATTCACCT-G--TTCAA-TATGCAACGTATCGGCACTGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGTT-GTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTG-ATGA------------------ACATCG--TT-GTTTGGAAAAC----AAA-ATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT--C----A---TT--TTTAACTGCGCAT--GAGCA-T-TAGT---ATAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTG-AAAA------------------CC--TGCTTC-TTCTGGGAAACA--AAAAC-TAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TGAGGATTAGGACAAT-TT------TAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : cattttactgcacaAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCACT-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGTA-GTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGT---GGTCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|2 : GGGGTTAACAATTTC-CAATACTGGGTT-TT-CTTTCA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGC-TGTAAACTGCATCG-GTAA-TAAATTGG-ACAA--TAAAGAACAATGTGT-ATTTCG-TTTTCAATG-AATAATCAGCATGT-ATGACAAGTACGT--T-T-TCTTT-AGGAA-AA-----GGCCTAAG----A------ATA-TCTCCC-TTCTTCAA-TATGTAACGTATCGGCACT-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAG-TGTGT--------CATTCACTTC----TGGCAA-TTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATATTTTT-TAA-TAT-ATCTTGTT-CT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCTT--T--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG-CA-TCAG--CTCTTTTATCTGAGCAC--GGTCA-T-TTGT---GTACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT--ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------ATT-G----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT--TTG-A-T--AATA--G------------------------------------------ATCTGACGTCAC-ATCGAAGATTTCAGATCTTA-AAGGCTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAG---ATGGGGAAAACTtgccatcacaatatattt
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CAATACT
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAAata
gi|25 : a---TGACAA-TTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATACTg
gi|26 : cACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA--TAGTA-T--AATA--G-AT
gi|3 : GGGGTTAACAATTTC-CAATAC---------------A--TATA-GC-ATTTACAATAAAATA-TTTTATTATGC-TGTAATCTGCATCG-ATGA-TAAATTGG-ACAA--TTAAGAACAAAGTGC-ATTTCG-TTTTCAATG-AATAATCTGCATGT-ATGGCACGTAAGT--GGTATTTTTAACGAA-CC-CAT-GGTCTAGA----AT--GATATA-TCTTCCTGT-TTCAA-TAGGCAAGGTATCGGCACT-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGTA-GTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAG-TGTGT---TTATATATTCACAGCT----GGCAA-TTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AAT-A---TGTT-CT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCTT--T--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATA-CG-CCAGGGTTCTTTTAGCTGAGCAT--GGACA-T-TTGG---GTACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTA-A-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTT-TATATAC-ATGTATTCACAAC----TGGCAA-TCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATACATTT-TAA-AAT-ATGTTGTT-GT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CTT--T--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTT-ATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------ATT-G----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT----------------------T--AATA--G-ATA----------C-TTTATAC----AGC---CAC-TCTGCAGCTGACGTCAC-ACTGAAGATTTCCAATCTTAG-AGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAA--AGAG-ATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcattgagcacgggcaT-AAGA------TAGTTACCTCTAACTTTCGTCTT--T--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--T------TCGTTTAGCTGAGTAT--GGGCA-T-TTGG----TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTG-ACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------ACT-AAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT--TTG-A-T--AAAA--G-AT
gi|5 : --TTG-AAT--AATACAGCACG----------C-TC--TGC----AGCTGGTAAGCC-ATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcgg-AAGA------TAGTTACCTCTAACTTTCGTCTT--T--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--T------TCTTTTAGCTGAGTAT--GGGCA-T-TTGG---GTACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTG-ACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTATT-C----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT--TTG-A-T--AAAA--G-AT
gi|6 : TT-TC----TTCGTTG-AAT--AATACAG-CCG----------C-TC--TGC----AGCTGGTAA-GC-ATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatcAACTATAGCATAC-ATTTG--GGAAA-GTTTTTTT-TAA---T-C---TGTT-CTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCTT--AAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT--T--T-A---TTCTTTTAGTTAAGCAC--GGGCA-T-TTTG---GAATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTG-ACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAA-ATAACA-----------------------TTCAAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------ATT-G----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTG-TTG-G-TTGAA-A--G-ATA----------CATC--AGCTTTAAAATAG----TC-AAGTCCGATGTCAT-TCCGAACGGTTCCGATCTT-GGGGGCTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GGAA--GT-C-GTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-TA--TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC-----------TG--------GGAT-CACA-CT-------AA-TTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAAAA-AC-ATTTT--GGTAA-ATGCTTTT-TAA-AAA-ATGCTGTT-GT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCTT--T--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGTTAGACC----T--TCA---TTCTT---ACTGA-CAC--GG--A-T-TTGG---GTACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-TA-CT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT--T---A-T--AATA----ATACTTTAACGCGC-TC--TGC----AGCT-GCA--TC-A-ATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATATTTTT-TAATAATTA---TGTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCTT--T--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCAGTACTTTTTTAACTGAGCATT-GGACA-T-TTGGCCGGTACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 333333333333 11 11 222222 11111 222222222 1 1 1 1 11 11 222 111111 5555555555 22222 44444444444444 22222222 111 111111 11 111111111 111111 11111 55555555555555 1111111111 111 3333333333333333333 111 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 1111 22222222222 11111 11111111111 33333333333333333333333333333333333333333333 11 11 333 111111 1 11111
lowQualScore : 2 6 999999999999 11 8 8 0 1 0 8 8 0 8 1 8 6 8 11 8 8 8 8 1 0 333333 0 8 88888 111111111 8 0 0 3 0 6 11 0 11 6 5 000 5 5 5 5 1 1 666666 77 77 1 777 1 6 3 9999999999 0 8 99999 6 9 3 33333333333333 3 5 66 5 5 77 88888888 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 8 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 777 2 22222 4 3 2 22222222222222 2 33 1 3 0 6666666666 55 3 3 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 4 4 77 5 4444444444444444444 66 44 1 222 4 4 4 1 333333 55 55 3 3 3 1 7777 4 0 4444444 22 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 5 0000 5 33333333333 9999 777 22222 0 44444444444 0 4 8 55 1 88888888888888888888888888888888888888888888 6 00 99 6 1 44 3 6 1 99 6 99 333 1 6 444444 66 0 22222 4
lowQualScore : . . ............ .. . . . . . . . . . . . . . .. . . . . . . ...... . . ..... ......... . . . . . . .. . .. . . ... . . . . . . ...... .. .. . ... . . . .......... . . ..... . . . .............. . . .. . . .. ........ . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . ... . ..... . . . .............. . .. . . . .......... .. . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . .. . ................... .. .. . ... . . . . ...... .. .. . . . . .... . . ....... .. ... . ... . . . . ........................................................... . .... . ........... .... ... ..... . ........... . . . .. . ............................................ . .. .. . . .. . . . .. . .. ... . . ...... .. . ..... .
lowQualScore : 5 7 555555555555 00 0 0 8 4 8 0 0 8 0 4 0 0 0 00 0 0 0 0 0 6 666666 8 0 22222 222222222 0 0 0 2 0 0 00 8 00 7 7 333 0 7 7 7 7 7 444444 11 99 7 888 0 7 2 4444444444 8 2 66666 7 3 2 00000000000000 4 0 99 0 0 44 99999999 7 7 7 7 000 4 999999 9 3 11 11 22 888 4 2 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 000 9 99999 4 4 7 77777777777777 3 88 2 6 2 5555555555 00 6 6 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 4 4 33 4 1111111111111111111 11 77 0 666 9 0 0 0 222222 00 55 6 6 6 0 7777 0 8 7777777 77 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 0 6666 0 88888888888 4444 888 33333 4 99999999999 9 0 0 55 1 77777777777777777777777777777777777777777777 7 33 22 7 0 00 7 7 0 22 7 22 888 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTCAA-TATGCAACGTATCGGCACT-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT-T--ATGTATTCACAGCT---TGGCAA-TTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCTT--T--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTG-ACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTG--T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTCAA-TATGCAACGTATCGGCACT-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT----ATGTATTCACAGCT---TGGCAA-TTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCTT--T--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTG-ACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAANATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCAATACTGGGTTTTCTTTCA--TATA-GCTATTTACAATCAA-TA-TTTCATTATGCT-GTAATCTGCATCGTATAAT-AA-TTGG-ACAAT--AATGAACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGTG--T-TTTTTAAGGAAGCA-CATTGGTCTAGA----ATA--ATATAT-CTCCT-GT-TTCAAATATGCAACGTATCGG-ACTTAATTCTT--G-TTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGGAAA-TG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAGTAT----------ATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATAC-TTTTCAA-AAT-A--T---GTTCC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATA-CG-TCA--GTGTTCTTTTAGCTGAGCAT-GGACATATTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG---ATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCATC--ACAAGTATATGT-GTTAAC-ATTAAATA-AATCATTATACT-GCCATCTGCATTG-CTCAT-ACTTTGA-ACAAT--ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG------TTTGTATGTAA-CATTATTG---TAGACTTTATG--ATATGT--TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC---ATAA------------CA--TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGGT-TTTTTAAGGAA-CA-CAT-GGTCTAGA----ATACAATATATTCACCT-GT-T-CAA-TATGCAACGTATCGGCACTGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGTT-GTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTG-ATGA------------------ACATCG--TT-GTTTGGAAAAC-----AAAATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT--CA-T----------TTTTAACTGCGCAT-GAGCAT-TAGT---A------TAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTG-AAAA------------------CC--TGCTTC-TTCTGGGAAA-C--AAAAACTAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TTTTA-CTGCACAT-GAGGAT-TAGG---ACAATTTTAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : caAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCACT-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGTA-GTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGTGG---TCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|2 : GGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAAACTGCATCG-GTAAT-AAATTGG-ACAAT--AAAGAACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGTT--T-TCTTT-AGGAA-AA-----GGCCTAAG----A------ATAT-CTCCC-TTCTTCAA-TATGTAACGTATCGGCACT-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAGTGTGT-------CATTCACTTC----TGGCAA-TTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATAT-TTTTTAA-TAT-ATCT--TGTTCT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCTT--T--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG-CA-TCA--GC--TCTTTTATCTGAGCAC-GGTCAT-TTGT---G------TACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT--ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------A-TTG----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-----------------------------------------ATCTGACGTCAC-ATCGAAGATTTCAGATCTTA-AAGGCTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAG---ATGGGGAAAACTtgccatcacaatatattt
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CAATACT
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAAata
gi|25 : a---TGACAA-TTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATAC-Tg
gi|26 : cACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA--TAGTA-T--AATA--G-AT
gi|3 : GGGGTTAACAATTTC-CAATAC-------------A--TATA-GC-ATTTACAATAAAATA-TTTTATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--TAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGG-TATTTTTAACGAA-CC-CAT-GGTCTAGA----ATG--ATATAT-CTTCCTGT-TTCAA-TAGGCAAGGTATCGGCACT-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGTA-GTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGTGTTT--ATATATTCACAGCT----GGCAA-TTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AAT-A-----TGTTCT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCTT--T--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATA-CG-CCAGGGT--TCTTTTAGCTGAGCAT-GGACAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTA-A-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATACATGTATTCACAAC----TGGCAA-TCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATAC-ATTTTAA-AAT-ATGT--TGTTGT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CTT--T--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TGAGCAC-GGGCAT-T--------------------------CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTT-ATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------A-TTG----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT----------------------T--AATA--G-ATA----------C-TTTATACAGCC----ACTC--T-GCAGCTGACGTCAC-ACTGAAGATTTCCAATCTTA-GAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAA--AGAG-ATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcatT-AAGA------TAGTTACCTCTAACTTTCGTCTT--T--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCGTTTAGCTGAGTAT-GGGCAT-TTGG----------TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTG-ACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------A-CTAAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT--TTG-A-T--AAAA--G-AT
gi|5 : --TTG-AAT--AATACAGCACG----------C-TC--TGCAGCT----GGTAAGCCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcgg-AAGA------TAGTTACCTCTAACTTTCGTCTT--T--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCTTTTAGCTGAGTAT-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTG-ACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTA-TTC----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT--TTG-A-T--AAAA--G-AT
gi|6 : TT-TC----TTCGTTG-AAT--AATACAG-CCG----------C-TC--TGCAGCT----GGTAA-GCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatcAACTATAGCATAC-ATTTG--GGAAA-GTTT-TTTTTAA---T----C--TGTTCTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCTT--AAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT-----TTA---T--TCTTTTAGTTAAGCAC-GGGCAT-TTTG---G------AATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTG-ACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAA-ATAACA-----------------------TTCAAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------A-TTG----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTG-TTG-G-TTGAA-A--G-ATA----------CAT-----CAGCTTTAAAATAG-TCAAGTCCGATGTCAT-TCCGAACGGTTCCGATCTT-GGGGGCTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GGAA--GT-C-GTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-TA--TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC----------TG-------GGAT-CACA-CT-------AA-TTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAAAA-AC-ATTTT--GGTAA-ATGC-TTTTTAA-AAA-A--TGCTGTTGT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCTT--T--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGT--TAG-AC--CT-TCA---T--TCTT---ACTGA-CAC-GG--AT-TTGG---G------TACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-T-ACT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT--T---A-T--AATA----ATACTTTAACGCGC-TC--TGCAGCT-----GCA--TCA-ATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATAT-TTTTTAATAATTA--T--GTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCTT--T--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCA--GTACTTTTTTAACTGAGCATTGGACAT-TTGGCCGG------TACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 333333333333 11 11 222222 11111 222222222 1 1 1 111 11 222 111111 5555555555555 22222 44444444444444 3333333 111 111111 11 111111111 111111 11111 55555555555555 1111111111 111 3333333333333333333 111 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 1111 22222222222 11111 11111111111 33333333333333333333333333333333333333333333 11 11 333 111111 1 11111
lowQualScore : 2 6 999999999999 11 8 8 0 22 8 8 0 8 1 88 8 11 8 8 8 8 1 0 777777 8 88888 111111111 8 0 0 3 0 8 8 111 11 6 5 000 5 5 5 1 1 666666 77 77 1 777 1 6 3333333333333 0 8 99999 6 9 3 33333333333333 3 5 66 5 5 77 4444444 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 8 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 777 2 22222 4 3 2 22222222222222 2 33 1 3 0 6666666666 55 3 3 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 8 4 2 5 4444444444444444444 66 44 1 222 4 4 1 000000 0 4 55 3 3 3 1 7777 4 0 4444444 22 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 5 0000 5 33333333333 9999 777 22222 0 44444444444 0 4 8 55 1 88888888888888888888888888888888888888888888 6 00 99 6 1 44 3 6 1 99 6 99 333 1 6 444444 66 0 22222 4
lowQualScore : . . ............ .. . . . .. . . . . . .. . .. . . . . . . ...... . ..... ......... . . . . . . . ... .. . . ... . . . . . ...... .. .. . ... . . ............. . . ..... . . . .............. . . .. . . .. ....... . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . ... . ..... . . . .............. . .. . . . .......... .. . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . . . ................... .. .. . ... . . . ...... . . .. . . . . .... . . ....... .. ... . ... . . . . ........................................................... . .... . ........... .... ... ..... . ........... . . . .. . ............................................ . .. .. . . .. . . . .. . .. ... . . ...... .. . ..... .
lowQualScore : 5 7 555555555555 00 0 0 8 22 0 0 8 0 4 88 0 00 0 0 0 0 0 6 666666 0 22222 222222222 0 0 0 2 0 0 0 888 00 7 7 333 7 7 7 7 7 444444 11 99 7 888 0 7 0000000000000 8 2 66666 7 3 2 00000000000000 4 0 99 0 0 44 4444444 7 7 7 7 000 4 999999 9 3 11 11 22 888 4 2 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 000 9 99999 4 4 7 77777777777777 3 88 2 6 2 5555555555 00 6 6 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 9 4 9 4 1111111111111111111 11 77 0 666 0 0 0 888888 7 0 55 6 6 6 0 7777 0 8 7777777 77 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 0 6666 0 88888888888 4444 888 33333 4 99999999999 9 0 0 55 1 77777777777777777777777777777777777777777777 7 33 22 7 0 00 7 7 0 22 7 22 888 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT-----ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT---T-ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCAATACTGGGTTTTCTTTCA--TATA-GCTATTTACAATC-AATA-TTTCATTATGCT-GTAATCTGCATCGTATAAT--AATTGG-ACAAT--AATGAACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGT-G-T-TTTTTAAGGAAGCA-CATTGGTCTAGA----ATA--ATATAT-CTCCT-GT-TTCAAATATGCAACGTATCGG-ACTT-AATTCTT---GTTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGG-AAATG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAG-----------TATATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATAC-TTTTCAA-AAT-A-----TGTTCC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATA-CG-TCAGTGT--TCTTTTAGCTGAGCAT-GGACATATTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATATTTT-TTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG---ATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCATC--ACAAGTATATGT-GTTAAC-ATTAAATA-AATCATTATACT-GCCATCTGCATTG-CTCAT-ACTTTGA-ACAAT--ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG------TTTGTATGTAA-CATTATTG---TAGACTTTATG--ATATGT--TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC---ATAA------------CA--TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGGT-TTTTTAAGGAA-CA-CAT-GGTCTAGA----ATACAATATATTCACCT-GT-T-C-AATATGCAACGTATCGGCAC-TGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGT-TGTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTGATGA------------------ACATCG--TT-GTTTGGAAAAC-----AAAATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT--CA-T----------TTTTAACTGCGCAT-GAGCAT-TAGT---A------TAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTGAAAA------------------CC--TGCTTC-TTCTGGGAAA-C--AAAAACTAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TTTTA-CTGCACAT-GAGGAT-TAGG---ACAATTTTAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : caAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCAC-T-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGT-AGTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGTGG---TCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|2 : GGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAAACTGCATCG-GTAAT-AAATTGG-ACAAT--AAAGAACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGT---T-TTCTTTAGGAA-AA-----GGCCTAAG----A------ATAT-CTCCC-TTCTTC-AATATGTAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAGTGTGT--------CATTCACTTC----TGGC-AATTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATAT-TTTTTAA-TAT-ATCT--TGTTCT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCT--TT--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG-CA-TCA--GC--TCTTTTATCTGAGCAC-GGTCAT-TTGT---G------TACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT-ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------A-TTG----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-----------------------------------------ATCTGACGTCAC-ATCGAAGATTTCAGATCTTA-AAGGCTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAG---ATGGGGAAAACTtgccatcacaatatattt
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CAATACT
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAAata
gi|25 : a---TGAC-AATTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATAC-Tg
gi|26 : cACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA--TAGTA-T--AATA--G-AT
gi|3 : GGGGTTAACAATTTC-CAATAC-------------A--TATA-GC-ATTTACAATAAAATA-TTTTATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--TAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGG-TATTTTTAACGAA-CC-CAT-GGTCTAGA----ATG--ATATAT-CTTCCTGT-TTC-AATAGGCAAGGTATCGGCAC-T-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGT-AGTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGTGT---TTATATATTCACAGCT----GGC-AATTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AAT-A-----TGTTCT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCT--TT--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATA-CG-CCAGGGT--TCTTTTAGCTGAGCAT-GGACAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTAA-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATAC-ATGTATTCACAAC----TGGC-AATCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATAC-ATTTTAA-AAT-ATGT--TGTTGT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TGAGCAC-GGGCAT-T--------------------------CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTTATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------A-TTG----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT----------------------T--AATA--G-ATA----------C-TTTATACAGCC----ACTC--T-GCAGCTGACGTCAC-ACTGAAGATTTCCAATCTTA-GAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAA--AGAG-ATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcatT-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCGTTTAGCTGAGTAT-GGGCAT-TTGG----------TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------A-CTAAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT--TTG-A-T--AAAA--G-AT
gi|5 : --TTG-AAT--AATACAGCACG----------C-TC--TGCAGCT----GGTAAGCCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcgg-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCTTTTAGCTGAGTAT-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTA-TTC----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT--TTG-A-T--AAAA--G-AT
gi|6 : TT-TC----TTCGTTG-AAT--AATACAG-CCG----------C-TC--TGCAGCT----GGTAA-GCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatcAACTATAGCATAC-ATTTG--GGAAA-GTTT-TTTTTAA---T----C--TGTTCTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCT--TAAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT-----TTA---T--TCTTTTAGTTAAGCAC-GGGCAT-TTTG---G------AATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTGACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAAA---------------T----A---ACA-TTC-AAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------A-TTG----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTG-TTG-G-TTGAA-A--G-ATA----------CAT-----CAGCTTTAAAATAG-TCAAGTCCGATGTCAT-TCCGAACGGTTCCGATCTT-GGGGGCTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GGAA--GT-C-GTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-T-A-TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC----------TG--------GGAT-CACA-CT--------AATTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAAAA-AC-ATTTT--GGTAA-ATGC-TTTTTAA-AAA-A--TGCTGTTGT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCT--TT--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGT--TAG-AC--CT-TCA---T--TCTT---ACTGA-CAC-GG--AT-TTGG---G------TACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-T-ACT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT--T---A-T--AATA----ATACTTTAACGCGC-TC--TGCAGCT-----GCA--TCA-ATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATAT-TTTTTAATAATTA--T--GTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCT--TT--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCA--GTACTTTTTTAACTGAGCATTGGACAT-TTGGCCGG------TACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 333333333333 11 11 222222 11111 222222222 1 1 1 111 11 222 111111 555555555555 22222 44444444444444 3333333 111 111111 11 111111111 111111 11111 55555555555555 1111111111 111 3333333333333333333 111 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 111111 22222222222 11111 11111111111 33333333333333333333333333333333333333333333 11 11 333 111111 1 11111
lowQualScore : 2 6 999999999999 11 8 8 0 22 8 8 0 8 1 88 8 11 8 8 8 8 1 0 777777 8 88888 111111111 8 0 0 3 0 8 8 111 11 6 5 000 5 5 5 1 1 666666 77 77 1 777 1 6 000000000000 0 8 99999 6 9 3 33333333333333 3 5 66 5 5 77 4444444 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 8 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 777 2 22222 4 3 2 22222222222222 2 33 1 3 0 6666666666 55 3 3 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 8 4 2 5 4444444444444444444 66 44 1 222 4 4 1 000000 0 4 55 3 3 3 1 7777 4 0 4444444 6 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 000000 5 33333333333 9999 777 22222 0 44444444444 0 4 8 55 1 88888888888888888888888888888888888888888888 6 00 99 6 1 44 3 6 1 99 6 99 333 1 6 444444 66 0 22222 4
lowQualScore : . . ............ .. . . . .. . . . . . .. . .. . . . . . . ...... . ..... ......... . . . . . . . ... .. . . ... . . . . . ...... .. .. . ... . . ............ . . ..... . . . .............. . . .. . . .. ....... . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . ... . ..... . . . .............. . .. . . . .......... .. . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . . . ................... .. .. . ... . . . ...... . . .. . . . . .... . . ....... . ... . ... . . . . ........................................................... ...... . ........... .... ... ..... . ........... . . . .. . ............................................ . .. .. . . .. . . . .. . .. ... . . ...... .. . ..... .
lowQualScore : 5 7 555555555555 00 0 0 8 22 0 0 8 0 4 88 0 00 0 0 0 0 0 6 666666 0 22222 222222222 0 0 0 2 0 0 0 888 00 7 7 333 7 7 7 7 7 444444 11 99 7 888 0 7 666666666666 8 2 66666 7 3 2 00000000000000 4 0 99 0 0 44 4444444 7 7 7 7 000 4 999999 9 3 11 11 22 888 4 2 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 000 9 99999 4 4 7 77777777777777 3 88 2 6 2 5555555555 00 6 6 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 9 4 9 4 1111111111111111111 11 77 0 666 0 0 0 888888 7 0 55 6 6 6 0 7777 0 8 7777777 1 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 888888 0 88888888888 4444 888 33333 4 99999999999 9 0 0 55 1 77777777777777777777777777777777777777777777 7 33 22 7 0 00 7 7 0 22 7 22 888 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT-T--ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT----ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCAATACTGGGTTTTCTTTCA--TATA-GCTATTTACAATC-AATA-TTTCATTATGCT-GTAATCTGCATCGTATAAT--AATTGG-ACAAT--AATGAACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGT-G-T-TTTTTAAGGAAGCA-CATTGGTCTAGA----ATA--ATATAT-CTCCT-GT-TTCAAATATGCAACGTATCGG-ACTT-AATTCTT---GTTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGG-AAATG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAG----------TATATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATAC-TTTTCAA-AAT-A-----TGTTCC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATA-CG-TCAGTGT--TCTTTTAGCTGAGCAT-GGACATATTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATATTTT-TTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG---ATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCATC--ACAAGTATATGT-GTTAAC-ATTAAATA-AATCATTATACT-GCCATCTGCATTG-CTCAT-ACTTTGA-ACAAT--ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG------TTTGTATGTAA-CATTATTG---TAGACTTTATG--ATATGT--TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC---ATAA------------CA--TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGGT-TTTTTAAGGAA-CA-CAT-GGTCTAGA----ATACAATATATTCACCT-GT-T-C-AATATGCAACGTATCGGCAC-TGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGT-TGTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTGATGA------------------ACATCG--TT-GTTTGGAAAAC-----AAAATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT--CA-T----------TTTTAACTGCGCAT-GAGCAT-TAGT---A------TAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTGAAAA------------------CC--TGCTTC-TTCTGGGAAA-C--AAAAACTAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TTTTA-CTGCACAT-GAGGAT-TAGG---ACAATTTTAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : caAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCAC-T-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGT-AGTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGTGG---TCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|2 : GGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAAACTGCATCG-GTAAT-AAATTGG-ACAAT--AAAGAACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGT---T-TTCTTTAGGAA-AA-----GGCCTAAG----A------ATAT-CTCCC-TTCTTC-AATATGTAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAGTGTGT-------CATTCACTTC----TGGC-AATTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATAT-TTTTTAA-TAT-ATCT--TGTTCT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCT--TT--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG-CA-TCA--GC--TCTTTTATCTGAGCAC-GGTCAT-TTGT---G------TACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT-ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------ATT-G----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-----------------------------------------ATCTGACGTCAC-ATCGAAGATTTCAGATCTTA-AAGGCTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAG---ATGGGGAAAACTtgccatcacaatatattt
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CAATACT
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAAata
gi|25 : a---TGAC-AATTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATAC-Tg
gi|26 : cACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA--TAGTA-T--AATA--G-AT
gi|3 : GGGGTTAACAATTTC-CAATAC-------------A--TATA-GC-ATTTACAATAAAATA-TTTTATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--TAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGG-TATTTTTAACGAA-CC-CAT-GGTCTAGA----ATG--ATATAT-CTTCCTGT-TTC-AATAGGCAAGGTATCGGCAC-T-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGT-AGTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGTGTTT--ATATATTCACAGCT----GGC-AATTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AAT-A-----TGTTCT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCT--TT--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATA-CG-CCAGGGT--TCTTTTAGCTGAGCAT-GGACAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTAA-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATACATGTATTCACAAC----TGGC-AATCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATAC-ATTTTAA-AAT-ATGT--TGTTGT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TGAGCAC-GGGCAT-T--------------------------CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTTATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------ATT-G----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT----------------------T--AATA--G-ATA----------C-TTTATACAGCC----ACTC--T-GCAGCTGACGTCAC-ACTGAAGATTTCCAATCTTA-GAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAA--AGAG-ATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcatT-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCGTTTAGCTGAGTAT-GGGCAT-TTGG----------TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------ACT-AAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT--TTG-A-T--AAAA--G-AT
gi|5 : --TTG-AAT--AATACAGCACG----------C-TC--TGCAGCT----GGTAAGCCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcgg-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCTTTTAGCTGAGTAT-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTATT-C----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT--TTG-A-T--AAAA--G-AT
gi|6 : TT-TC----TTCGTTG-AAT--AATACAG-CCG----------C-TC--TGCAGCT----GGTAA-GCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatcAACTATAGCATAC-ATTTG--GGAAA-GTTT-TTTTTAA---T----C--TGTTCTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCT--TAAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT-----TTA---T--TCTTTTAGTTAAGCAC-GGGCAT-TTTG---G------AATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTGACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAAA---------------T----A---ACA-TTC-AAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------ATT-G----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTG-TTG-G-TTGAA-A--G-ATA----------CAT-----CAGCTTTAAAATAG-TCAAGTCCGATGTCAT-TCCGAACGGTTCCGATCTT-GGGGGCTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GGAA--GT-C-GTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-T-A-TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC----------TG-------GGAT-CACA-CT--------AATTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAAAA-AC-ATTTT--GGTAA-ATGC-TTTTTAA-AAA-A--TGCTGTTGT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCT--TT--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGT--TAG-AC--CT-TCA---T--TCTT---ACTGA-CAC-GG--AT-TTGG---G------TACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-TA-CT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT--T---A-T--AATA----ATACTTTAACGCGC-TC--TGCAGCT-----GCA--TCA-ATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATAT-TTTTTAATAATTA--T--GTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCT--TT--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCA--GTACTTTTTTAACTGAGCATTGGACAT-TTGGCCGG------TACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 333333333333 11 11 222222 11111 222222222 1 1 1 111 11 222 111111 5555555555555 22222 44444444444444 3333333 111 111111 11 111111111 111111 11111 55555555555555 1111111111 111 3333333333333333333 111 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 1111 22222222222 11111 11111111111 33333333333333333333333333333333333333333333 11 11 333 111111 1 11111
lowQualScore : 2 6 999999999999 11 8 8 0 22 8 8 0 8 1 88 8 11 8 8 8 8 1 0 777777 8 88888 111111111 8 0 0 3 0 8 8 111 11 6 5 000 5 5 5 1 1 666666 77 77 1 777 1 6 3333333333333 0 8 99999 6 9 3 33333333333333 3 5 66 5 5 77 4444444 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 8 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 777 2 22222 4 3 2 22222222222222 2 33 1 3 0 6666666666 55 3 3 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 8 4 2 5 4444444444444444444 66 44 1 222 4 4 1 000000 0 4 55 3 3 3 1 7777 4 0 4444444 22 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 5 0000 5 33333333333 9999 777 22222 0 44444444444 0 4 8 55 1 88888888888888888888888888888888888888888888 6 00 99 6 1 44 3 6 1 99 6 99 333 1 6 444444 66 0 22222 4
lowQualScore : . . ............ .. . . . .. . . . . . .. . .. . . . . . . ...... . ..... ......... . . . . . . . ... .. . . ... . . . . . ...... .. .. . ... . . ............. . . ..... . . . .............. . . .. . . .. ....... . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . ... . ..... . . . .............. . .. . . . .......... .. . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . . . ................... .. .. . ... . . . ...... . . .. . . . . .... . . ....... .. ... . ... . . . . ........................................................... . .... . ........... .... ... ..... . ........... . . . .. . ............................................ . .. .. . . .. . . . .. . .. ... . . ...... .. . ..... .
lowQualScore : 5 7 555555555555 00 0 0 8 22 0 0 8 0 4 88 0 00 0 0 0 0 0 6 666666 0 22222 222222222 0 0 0 2 0 0 0 888 00 7 7 333 7 7 7 7 7 444444 11 99 7 888 0 7 0000000000000 8 2 66666 7 3 2 00000000000000 4 0 99 0 0 44 4444444 7 7 7 7 000 4 999999 9 3 11 11 22 888 4 2 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 000 9 99999 4 4 7 77777777777777 3 88 2 6 2 5555555555 00 6 6 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 9 4 9 4 1111111111111111111 11 77 0 666 0 0 0 888888 7 0 55 6 6 6 0 7777 0 8 7777777 77 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 0 6666 0 88888888888 4444 888 33333 4 99999999999 9 0 0 55 1 77777777777777777777777777777777777777777777 7 33 22 7 0 00 7 7 0 22 7 22 888 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT-----ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT---T-ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCAATACTGGGTTTTCTTTCA--TATA-GCTATTTACAATC-AATA-TTTCATTATGCT-GTAATCTGCATCGTATAAT--AATTGG-ACAAT--AATGAACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGT-G-T-TTTTTAAGGAAGCA-CATTGGTCTAGA----ATA--ATATAT-CTCCT-GT-TTCAAATATGCAACGTATCGG-ACTT-AATTCTT---GTTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGG-AAATG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAG-----------TATATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATAC-TTTTCAA-AAT-A-----TGTTCC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATA-CG-TCAGTGT--TCTTTTAGCTGAGCAT-GGACATATTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATATTTT-TTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG---ATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCATC--ACAAGTATATGT-GTTAAC-ATTAAATA-AATCATTATACT-GCCATCTGCATTG-CTCAT-ACTTTGA-ACAAT--ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG------TTTGTATGTAA-CATTATTG---TAGACTTTATG--ATATGT--TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC---ATAA------------CA--TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGGT-TTTTTAAGGAA-CA-CAT-GGTCTAGA----ATACAATATATTCACCT-GT-T-C-AATATGCAACGTATCGGCAC-TGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGT-TGTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTGATGA------------------ACATCG--TT-GTTTGGAAAAC-----AAAATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT--CA-T----------TTTTAACTGCGCAT-GAGCAT-TAGT---A------TAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTGAAAA------------------CC--TGCTTC-TTCTGGGAAA-C--AAAAACTAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TTTTA-CTGCACAT-GAGGAT-TAGG---ACAATTTTAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : caAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCAC-T-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGT-AGTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGTGG---TCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|2 : GGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAAACTGCATCG-GTAAT-AAATTGG-ACAAT--AAAGAACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGT---T-TTCTTTAGGAA-AA-----GGCCTAAG----A------ATAT-CTCCC-TTCTTC-AATATGTAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAGTGTGT--------CATTCACTTC----TGGC-AATTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATAT-TTTTTAA-TAT-ATCT--TGTTCT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCT--TT--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG-CA-TCA--GC--TCTTTTATCTGAGCAC-GGTCAT-TTGT---G------TACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT-ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------A-TTG----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-----------------------------------------ATCTGACGTCAC-ATCGAAGATTTCAGATCTTA-AAGGCTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAG---ATGGGGAAAACTtgccatcacaatatattt
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CAATACT
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAAata
gi|25 : a---TGAC-AATTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATAC-Tg
gi|26 : cACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA--TAGTA-T--AATA--G-AT
gi|3 : GGGGTTAACAATTTC-CAATAC-------------A--TATA-GC-ATTTACAATAAAATA-TTTTATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--TAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGG-TATTTTTAACGAA-CC-CAT-GGTCTAGA----ATG--ATATAT-CTTCCTGT-TTC-AATAGGCAAGGTATCGGCAC-T-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGT-AGTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGTGT---TTATATATTCACAGCT----GGC-AATTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AAT-A-----TGTTCT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCT--TT--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATA-CG-CCAGGGT--TCTTTTAGCTGAGCAT-GGACAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTAA-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATAC-ATGTATTCACAAC----TGGC-AATCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATAC-ATTTTAA-AAT-ATGT--TGTTGT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TGAGCAC-GGGCAT-T--------------------------CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTTATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------A-TTG----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT----------------------T--AATA--G-ATA----------C-TTTATACAGCC----ACTC--T-GCAGCTGACGTCAC-ACTGAAGATTTCCAATCTTA-GAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAA--AGAG-ATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcatT-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCGTTTAGCTGAGTAT-GGGCAT-TTGG----------TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------A-CTAAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT--TTG-A-T--AAAA--G-AT
gi|5 : --TTG-AAT--AATACAGCACG----------C-TC--TGCAGCT----GGTAAGCCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcgg-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCTTTTAGCTGAGTAT-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTA-TTC----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT--TTG-A-T--AAAA--G-AT
gi|6 : TT-TC----TTCGTTG-AAT--AATACAG-CCG----------C-TC--TGCAGCT----GGTAA-GCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatcAACTATAGCATAC-ATTTG--GGAAA-GTTT-TTTTTAA---T----C--TGTTCTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCT--TAAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT-----TTA---T--TCTTTTAGTTAAGCAC-GGGCAT-TTTG---G------AATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTGACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAAA---------------T----A---ACA-TTC-AAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------A-TTG----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTG-TTG-G-TTGAA-A--G-ATA----------CAT-----CAGCTTTAAAATAG-TCAAGTCCGATGTCAT-TCCGAACGGTTCCGATCTT-GGGGGCTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GGAA--GT-C-GTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-T-A-TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC----------TG--------GGAT-CACA-CT--------AATTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAAAA-AC-ATTTT--GGTAA-ATGC-TTTTTAA-AAA-A--TGCTGTTGT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCT--TT--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGT--TAG-AC--CT-TCA---T--TCTT---ACTGA-CAC-GG--AT-TTGG---G------TACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-T-ACT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT--T---A-T--AATA----ATACTTTAACGCGC-TC--TGCAGCT-----GCA--TCA-ATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATAT-TTTTTAATAATTA--T--GTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCT--TT--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCA--GTACTTTTTTAACTGAGCATTGGACAT-TTGGCCGG------TACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 333333333333 11 11 222222 11111 222222222 1 1 1 111 11 222 111111 555555555555 22222 44444444444444 3333333 111 111111 11 111111111 111111 11111 55555555555555 1111111111 111 3333333333333333333 111 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 111111 22222222222 11111 11111111111 33333333333333333333333333333333333333333333 11 11 333 111111 1 11111
lowQualScore : 2 6 999999999999 11 8 8 0 22 8 8 0 8 1 88 8 11 8 8 8 8 1 0 777777 8 88888 111111111 8 0 0 3 0 8 8 111 11 6 5 000 5 5 5 1 1 666666 77 77 1 777 1 6 000000000000 0 8 99999 6 9 3 33333333333333 3 5 66 5 5 77 4444444 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 8 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 777 2 22222 4 3 2 22222222222222 2 33 1 3 0 6666666666 55 3 3 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 8 4 2 5 4444444444444444444 66 44 1 222 4 4 1 000000 0 4 55 3 3 3 1 7777 4 0 4444444 6 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 000000 5 33333333333 9999 777 22222 0 44444444444 0 4 8 55 1 88888888888888888888888888888888888888888888 6 00 99 6 1 44 3 6 1 99 6 99 333 1 6 444444 66 0 22222 4
lowQualScore : . . ............ .. . . . .. . . . . . .. . .. . . . . . . ...... . ..... ......... . . . . . . . ... .. . . ... . . . . . ...... .. .. . ... . . ............ . . ..... . . . .............. . . .. . . .. ....... . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . ... . ..... . . . .............. . .. . . . .......... .. . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . . . ................... .. .. . ... . . . ...... . . .. . . . . .... . . ....... . ... . ... . . . . ........................................................... ...... . ........... .... ... ..... . ........... . . . .. . ............................................ . .. .. . . .. . . . .. . .. ... . . ...... .. . ..... .
lowQualScore : 5 7 555555555555 00 0 0 8 22 0 0 8 0 4 88 0 00 0 0 0 0 0 6 666666 0 22222 222222222 0 0 0 2 0 0 0 888 00 7 7 333 7 7 7 7 7 444444 11 99 7 888 0 7 666666666666 8 2 66666 7 3 2 00000000000000 4 0 99 0 0 44 4444444 7 7 7 7 000 4 999999 9 3 11 11 22 888 4 2 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 000 9 99999 4 4 7 77777777777777 3 88 2 6 2 5555555555 00 6 6 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 9 4 9 4 1111111111111111111 11 77 0 666 0 0 0 888888 7 0 55 6 6 6 0 7777 0 8 7777777 1 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 888888 0 88888888888 4444 888 33333 4 99999999999 9 0 0 55 1 77777777777777777777777777777777777777777777 7 33 22 7 0 00 7 7 0 22 7 22 888 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT-T--ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT----ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCAATACTGGGTTTTCTTTCA--TATA-GCTATTTACAATC-AATA-TTTCATTATGCT-GTAATCTGCATCGTATAAT--AATTGG-ACAAT--AATGAACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGT-G-T-TTTTTAAGGAAGCA-CATTGGTCTAGA----ATA--ATATAT-CTCCT-GT-TTCAAATATGCAACGTATCGG-ACTT-AATTCTT---GTTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGG-AAATG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAG----------TATATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATAC-TTTTCAA-AAT-A-----TGTTCC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATA-CG-TCAGTGT--TCTTTTAGCTGAGCAT-GGACATATTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATATTTT-TTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG---ATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCATC--ACAAGTATATGT-GTTAAC-ATTAAATA-AATCATTATACT-GCCATCTGCATTG-CTCAT-ACTTTGA-ACAAT--ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG------TTTGTATGTAA-CATTATTG---TAGACTTTATG--ATATGT--TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC---ATAA------------CA--TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGGT-TTTTTAAGGAA-CA-CAT-GGTCTAGA----ATACAATATATTCACCT-GT-T-C-AATATGCAACGTATCGGCAC-TGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGT-TGTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTGATGA------------------ACATCG--TT-GTTTGGAAAAC-----AAAATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT--CA-T----------TTTTAACTGCGCAT-GAGCAT-TAGT---A------TAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTGAAAA------------------CC--TGCTTC-TTCTGGGAAA-C--AAAAACTAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TTTTA-CTGCACAT-GAGGAT-TAGG---ACAATTTTAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : caAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCAC-T-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGT-AGTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGTGG---TCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|2 : GGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAAACTGCATCG-GTAAT-AAATTGG-ACAAT--AAAGAACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGT---T-TTCTTTAGGAA-AA-----GGCCTAAG----A------ATAT-CTCCC-TTCTTC-AATATGTAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAGTGTGT-------CATTCACTTC----TGGC-AATTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATAT-TTTTTAA-TAT-ATCT--TGTTCT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCT--TT--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG-CA-TCA--GC--TCTTTTATCTGAGCAC-GGTCAT-TTGT---G------TACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT-ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------ATT-G----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-----------------------------------------ATCTGACGTCAC-ATCGAAGATTTCAGATCTTA-AAGGCTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAG---ATGGGGAAAACTtgccatcacaatatattt
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CAATACT
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAAata
gi|25 : a---TGAC-AATTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATAC-Tg
gi|26 : cACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA--TAGTA-T--AATA--G-AT
gi|3 : GGGGTTAACAATTTC-CAATAC-------------A--TATA-GC-ATTTACAATAAAATA-TTTTATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--TAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGG-TATTTTTAACGAA-CC-CAT-GGTCTAGA----ATG--ATATAT-CTTCCTGT-TTC-AATAGGCAAGGTATCGGCAC-T-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGT-AGTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGTGTTT--ATATATTCACAGCT----GGC-AATTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AAT-A-----TGTTCT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCT--TT--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATA-CG-CCAGGGT--TCTTTTAGCTGAGCAT-GGACAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTAA-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATACATGTATTCACAAC----TGGC-AATCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATAC-ATTTTAA-AAT-ATGT--TGTTGT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TGAGCAC-GGGCAT-T--------------------------CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTTATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------ATT-G----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT----------------------T--AATA--G-ATA----------C-TTTATACAGCC----ACTC--T-GCAGCTGACGTCAC-ACTGAAGATTTCCAATCTTA-GAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAA--AGAG-ATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcatT-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCGTTTAGCTGAGTAT-GGGCAT-TTGG----------TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------ACT-AAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT--TTG-A-T--AAAA--G-AT
gi|5 : --TTG-AAT--AATACAGCACG----------C-TC--TGCAGCT----GGTAAGCCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcgg-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCTTTTAGCTGAGTAT-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTATT-C----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT--TTG-A-T--AAAA--G-AT
gi|6 : TT-TC----TTCGTTG-AAT--AATACAG-CCG----------C-TC--TGCAGCT----GGTAA-GCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatcAACTATAGCATAC-ATTTG--GGAAA-GTTT-TTTTTAA---T----C--TGTTCTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCT--TAAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT-----TTA---T--TCTTTTAGTTAAGCAC-GGGCAT-TTTG---G------AATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTGACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAAA---------------T----A---ACA-TTC-AAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------ATT-G----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTG-TTG-G-TTGAA-A--G-ATA----------CAT-----CAGCTTTAAAATAG-TCAAGTCCGATGTCAT-TCCGAACGGTTCCGATCTT-GGGGGCTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GGAA--GT-C-GTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-T-A-TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC----------TG-------GGAT-CACA-CT--------AATTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAAAA-AC-ATTTT--GGTAA-ATGC-TTTTTAA-AAA-A--TGCTGTTGT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCT--TT--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGT--TAG-AC--CT-TCA---T--TCTT---ACTGA-CAC-GG--AT-TTGG---G------TACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-TA-CT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT--T---A-T--AATA----ATACTTTAACGCGC-TC--TGCAGCT-----GCA--TCA-ATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATAT-TTTTTAATAATTA--T--GTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCT--TT--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCA--GTACTTTTTTAACTGAGCATTGGACAT-TTGGCCGG------TACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 333333333333 11 11 222222 11111 222222222 1 1 1 111 11 222 111111 5555555555555 22222 44444444444444 3333333 111 111111 11 111111111 111111 11111 55555555555555 1111111111 111 3333333333333333333 111 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 1111 22222222222 11111 11111111111 33333333333333333333333333333333333333333333 11 11 333 111111 1 11111
lowQualScore : 2 6 999999999999 11 8 8 0 22 8 8 0 8 1 88 8 11 8 8 8 8 1 0 777777 8 88888 111111111 8 0 0 3 0 8 8 111 11 6 5 000 5 5 5 1 1 666666 77 77 1 777 1 6 3333333333333 0 8 99999 6 9 3 33333333333333 3 5 66 5 5 77 4444444 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 8 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 777 2 22222 4 3 2 22222222222222 2 33 1 3 0 6666666666 55 3 3 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 8 4 2 5 4444444444444444444 66 44 1 222 4 4 1 000000 0 4 55 3 3 3 1 7777 4 0 4444444 22 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 5 0000 5 33333333333 9999 777 22222 0 44444444444 0 4 8 55 1 88888888888888888888888888888888888888888888 6 00 99 6 1 44 3 6 1 99 6 99 333 1 6 444444 66 0 22222 4
lowQualScore : . . ............ .. . . . .. . . . . . .. . .. . . . . . . ...... . ..... ......... . . . . . . . ... .. . . ... . . . . . ...... .. .. . ... . . ............. . . ..... . . . .............. . . .. . . .. ....... . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . ... . ..... . . . .............. . .. . . . .......... .. . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . . . ................... .. .. . ... . . . ...... . . .. . . . . .... . . ....... .. ... . ... . . . . ........................................................... . .... . ........... .... ... ..... . ........... . . . .. . ............................................ . .. .. . . .. . . . .. . .. ... . . ...... .. . ..... .
lowQualScore : 5 7 555555555555 00 0 0 8 22 0 0 8 0 4 88 0 00 0 0 0 0 0 6 666666 0 22222 222222222 0 0 0 2 0 0 0 888 00 7 7 333 7 7 7 7 7 444444 11 99 7 888 0 7 0000000000000 8 2 66666 7 3 2 00000000000000 4 0 99 0 0 44 4444444 7 7 7 7 000 4 999999 9 3 11 11 22 888 4 2 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 000 9 99999 4 4 7 77777777777777 3 88 2 6 2 5555555555 00 6 6 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 9 4 9 4 1111111111111111111 11 77 0 666 0 0 0 888888 7 0 55 6 6 6 0 7777 0 8 7777777 77 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 0 6666 0 88888888888 4444 888 33333 4 99999999999 9 0 0 55 1 77777777777777777777777777777777777777777777 7 33 22 7 0 00 7 7 0 22 7 22 888 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT-----ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT---T-ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCAATACTGGGTTTTCTTTCA--TATA-GCTATTTACAATC-AATA-TTTCATTATGCT-GTAATCTGCATCGTATAAT--AATTGG-ACAAT--AATGAACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGT-G-T-TTTTTAAGGAAGCA-CATTGGTCTAGA----ATA--ATATAT-CTCCT-GT-TTCAAATATGCAACGTATCGG-ACTT-AATTCTT---GTTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGG-AAATG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAG-----------TATATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATAC-TTTTCAA-AAT-A-----TGTTCC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATA-CG-TCAGTGT--TCTTTTAGCTGAGCAT-GGACATATTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATATTTT-TTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG---ATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCATC--ACAAGTATATGT-GTTAAC-ATTAAATA-AATCATTATACT-GCCATCTGCATTG-CTCAT-ACTTTGA-ACAAT--ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG------TTTGTATGTAA-CATTATTG---TAGACTTTATG--ATATGT--TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC---ATAA------------CA--TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGGT-TTTTTAAGGAA-CA-CAT-GGTCTAGA----ATACAATATATTCACCT-GT-T-C-AATATGCAACGTATCGGCAC-TGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGT-TGTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTGATGA------------------ACATCG--TT-GTTTGGAAAAC-----AAAATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT--CA-T----------TTTTAACTGCGCAT-GAGCAT-TAGT---A------TAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTGAAAA------------------CC--TGCTTC-TTCTGGGAAA-C--AAAAACTAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TTTTA-CTGCACAT-GAGGAT-TAGG---ACAATTTTAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : caAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCAC-T-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGT-AGTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGTGG---TCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|2 : GGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAAACTGCATCG-GTAAT-AAATTGG-ACAAT--AAAGAACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGT---T-TTCTTTAGGAA-AA-----GGCCTAAG----A------ATAT-CTCCC-TTCTTC-AATATGTAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAGTGTGT--------CATTCACTTC----TGGC-AATTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATAT-TTTTTAA-TAT-ATCT--TGTTCT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCT--TT--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG-CA-TCA--GC--TCTTTTATCTGAGCAC-GGTCAT-TTGT---G------TACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT-ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------A-TTG----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-----------------------------------------ATCTGACGTCAC-ATCGAAGATTTCAGATCTTA-AAGGCTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAG---ATGGGGAAAACTtgccatcacaatatattt
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CAATACT
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAAata
gi|25 : a---TGAC-AATTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATAC-Tg
gi|26 : cACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA--TAGTA-T--AATA--G-AT
gi|3 : GGGGTTAACAATTTC-CAATAC-------------A--TATA-GC-ATTTACAATAAAATA-TTTTATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--TAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGG-TATTTTTAACGAA-CC-CAT-GGTCTAGA----ATG--ATATAT-CTTCCTGT-TTC-AATAGGCAAGGTATCGGCAC-T-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGT-AGTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGTGT---TTATATATTCACAGCT----GGC-AATTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AAT-A-----TGTTCT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCT--TT--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATA-CG-CCAGGGT--TCTTTTAGCTGAGCAT-GGACAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTAA-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATAC-ATGTATTCACAAC----TGGC-AATCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATAC-ATTTTAA-AAT-ATGT--TGTTGT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TGAGCAC-GGGCAT-T--------------------------CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTTATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------A-TTG----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT----------------------T--AATA--G-ATA----------C-TTTATACAGCC----ACTC--T-GCAGCTGACGTCAC-ACTGAAGATTTCCAATCTTA-GAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAA--AGAG-ATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcatT-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCGTTTAGCTGAGTAT-GGGCAT-TTGG----------TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------A-CTAAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT--TTG-A-T--AAAA--G-AT
gi|5 : --TTG-AAT--AATACAGCACG----------C-TC--TGCAGCT----GGTAAGCCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcgg-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCTTTTAGCTGAGTAT-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTA-TTC----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT--TTG-A-T--AAAA--G-AT
gi|6 : TT-TC----TTCGTTG-AAT--AATACAG-CCG----------C-TC--TGCAGCT----GGTAA-GCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatcAACTATAGCATAC-ATTTG--GGAAA-GTTT-TTTTTAA---T----C--TGTTCTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCT--TAAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT-----TTA---T--TCTTTTAGTTAAGCAC-GGGCAT-TTTG---G------AATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTGACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAAA---------------T----A---ACA-TTC-AAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------A-TTG----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTG-TTG-G-TTGAA-A--G-ATA----------CAT-----CAGCTTTAAAATAG-TCAAGTCCGATGTCAT-TCCGAACGGTTCCGATCTT-GGGGGCTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GGAA--GT-C-GTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-T-A-TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC----------TG--------GGAT-CACA-CT--------AATTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAAAA-AC-ATTTT--GGTAA-ATGC-TTTTTAA-AAA-A--TGCTGTTGT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCT--TT--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGT--TAG-AC--CT-TCA---T--TCTT---ACTGA-CAC-GG--AT-TTGG---G------TACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-T-ACT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT--T---A-T--AATA----ATACTTTAACGCGC-TC--TGCAGCT-----GCA--TCA-ATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATAT-TTTTTAATAATTA--T--GTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCT--TT--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCA--GTACTTTTTTAACTGAGCATTGGACAT-TTGGCCGG------TACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 333333333333 11 11 222222 11111 222222222 1 1 1 111 11 222 111111 555555555555 22222 44444444444444 3333333 111 111111 11 111111111 111111 11111 55555555555555 1111111111 111 3333333333333333333 111 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 111111 22222222222 11111 11111111111 33333333333333333333333333333333333333333333 11 11 333 111111 1 11111
lowQualScore : 2 6 999999999999 11 8 8 0 22 8 8 0 8 1 88 8 11 8 8 8 8 1 0 777777 8 88888 111111111 8 0 0 3 0 8 8 111 11 6 5 000 5 5 5 1 1 666666 77 77 1 777 1 6 000000000000 0 8 99999 6 9 3 33333333333333 3 5 66 5 5 77 4444444 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 8 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 777 2 22222 4 3 2 22222222222222 2 33 1 3 0 6666666666 55 3 3 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 8 4 2 5 4444444444444444444 66 44 1 222 4 4 1 000000 0 4 55 3 3 3 1 7777 4 0 4444444 6 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 000000 5 33333333333 9999 777 22222 0 44444444444 0 4 8 55 1 88888888888888888888888888888888888888888888 6 00 99 6 1 44 3 6 1 99 6 99 333 1 6 444444 66 0 22222 4
lowQualScore : . . ............ .. . . . .. . . . . . .. . .. . . . . . . ...... . ..... ......... . . . . . . . ... .. . . ... . . . . . ...... .. .. . ... . . ............ . . ..... . . . .............. . . .. . . .. ....... . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . ... . ..... . . . .............. . .. . . . .......... .. . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . . . ................... .. .. . ... . . . ...... . . .. . . . . .... . . ....... . ... . ... . . . . ........................................................... ...... . ........... .... ... ..... . ........... . . . .. . ............................................ . .. .. . . .. . . . .. . .. ... . . ...... .. . ..... .
lowQualScore : 5 7 555555555555 00 0 0 8 22 0 0 8 0 4 88 0 00 0 0 0 0 0 6 666666 0 22222 222222222 0 0 0 2 0 0 0 888 00 7 7 333 7 7 7 7 7 444444 11 99 7 888 0 7 666666666666 8 2 66666 7 3 2 00000000000000 4 0 99 0 0 44 4444444 7 7 7 7 000 4 999999 9 3 11 11 22 888 4 2 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 000 9 99999 4 4 7 77777777777777 3 88 2 6 2 5555555555 00 6 6 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 9 4 9 4 1111111111111111111 11 77 0 666 0 0 0 888888 7 0 55 6 6 6 0 7777 0 8 7777777 1 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 888888 0 88888888888 4444 888 33333 4 99999999999 9 0 0 55 1 77777777777777777777777777777777777777777777 7 33 22 7 0 00 7 7 0 22 7 22 888 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT-T--ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT----ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCAATACTGGGTTTTCTTTCA--TATA-GCTATTTACAATC-AATA-TTTCATTATGCT-GTAATCTGCATCGTATAAT--AATTGG-ACAAT--AATGAACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGT-G-T-TTTTTAAGGAAGCA-CATTGGTCTAGA----ATA--ATATAT-CTCCT-GT-TTCAAATATGCAACGTATCGG-ACTT-AATTCTT---GTTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGG-AAATG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAG----------TATATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATAC-TTTTCAA-AAT-A-----TGTTCC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATA-CG-TCAGTGT--TCTTTTAGCTGAGCAT-GGACATATTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATATTTT-TTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG---ATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCATC--ACAAGTATATGT-GTTAAC-ATTAAATA-AATCATTATACT-GCCATCTGCATTG-CTCAT-ACTTTGA-ACAAT--ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG------TTTGTATGTAA-CATTATTG---TAGACTTTATG--ATATGT--TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC---ATAA------------CA--TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGGT-TTTTTAAGGAA-CA-CAT-GGTCTAGA----ATACAATATATTCACCT-GT-T-C-AATATGCAACGTATCGGCAC-TGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGT-TGTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTGATGA------------------ACATCG--TT-GTTTGGAAAAC-----AAAATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT--CA-T----------TTTTAACTGCGCAT-GAGCAT-TAGT---A------TAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTGAAAA------------------CC--TGCTTC-TTCTGGGAAA-C--AAAAACTAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TTTTA-CTGCACAT-GAGGAT-TAGG---ACAATTTTAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : caAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCAC-T-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGT-AGTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGTGG---TCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|2 : GGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAAACTGCATCG-GTAAT-AAATTGG-ACAAT--AAAGAACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGT---T-TTCTTTAGGAA-AA-----GGCCTAAG----A------ATAT-CTCCC-TTCTTC-AATATGTAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAGTGTGT-------CATTCACTTC----TGGC-AATTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATAT-TTTTTAA-TAT-ATCT--TGTTCT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCT--TT--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG-CA-TCA--GC--TCTTTTATCTGAGCAC-GGTCAT-TTGT---G------TACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT-ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------ATT-G----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-----------------------------------------ATCTGACGTCAC-ATCGAAGATTTCAGATCTTA-AAGGCTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAG---ATGGGGAAAACTtgccatcacaatatattt
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CAATACT
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAAata
gi|25 : a---TGAC-AATTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATAC-Tg
gi|26 : cACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA--TAGTA-T--AATA--G-AT
gi|3 : GGGGTTAACAATTTC-CAATAC-------------A--TATA-GC-ATTTACAATAAAATA-TTTTATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--TAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGG-TATTTTTAACGAA-CC-CAT-GGTCTAGA----ATG--ATATAT-CTTCCTGT-TTC-AATAGGCAAGGTATCGGCAC-T-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGT-AGTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGTGTTT--ATATATTCACAGCT----GGC-AATTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AAT-A-----TGTTCT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCT--TT--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATA-CG-CCAGGGT--TCTTTTAGCTGAGCAT-GGACAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTAA-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------ATT-G----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATACATGTATTCACAAC----TGGC-AATCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATAC-ATTTTAA-AAT-ATGT--TGTTGT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TGAGCAC-GGGCAT-T--------------------------CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTTATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------ATT-G----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT----------------------T--AATA--G-ATA----------C-TTTATACAGCC----ACTC--T-GCAGCTGACGTCAC-ACTGAAGATTTCCAATCTTA-GAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAA--AGAG-ATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcatT-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCGTTTAGCTGAGTAT-GGGCAT-TTGG----------TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------ACT-AAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT--TTG-A-T--AAAA--G-AT
gi|5 : --TTG-AAT--AATACAGCACG----------C-TC--TGCAGCT----GGTAAGCCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcgg-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCTTTTAGCTGAGTAT-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTATT-C----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT--TTG-A-T--AAAA--G-AT
gi|6 : TT-TC----TTCGTTG-AAT--AATACAG-CCG----------C-TC--TGCAGCT----GGTAA-GCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatcAACTATAGCATAC-ATTTG--GGAAA-GTTT-TTTTTAA---T----C--TGTTCTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCT--TAAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT-----TTA---T--TCTTTTAGTTAAGCAC-GGGCAT-TTTG---G------AATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTGACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAAA---------------T----A---ACA-TTC-AAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------ATT-G----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTG-TTG-G-TTGAA-A--G-ATA----------CAT-----CAGCTTTAAAATAG-TCAAGTCCGATGTCAT-TCCGAACGGTTCCGATCTT-GGGGGCTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GGAA--GT-C-GTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-T-A-TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC----------TG-------GGAT-CACA-CT--------AATTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAAAA-AC-ATTTT--GGTAA-ATGC-TTTTTAA-AAA-A--TGCTGTTGT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCT--TT--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGT--TAG-AC--CT-TCA---T--TCTT---ACTGA-CAC-GG--AT-TTGG---G------TACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-TA-CT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT--T---A-T--AATA----ATACTTTAACGCGC-TC--TGCAGCT-----GCA--TCA-ATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATAT-TTTTTAATAATTA--T--GTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCT--TT--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCA--GTACTTTTTTAACTGAGCATTGGACAT-TTGGCCGG------TACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 333333333333 11 11 222222 11111 222222222 1 1 1 111 11 222 111111 5555555555555 22222 44444444444444 3333333 111 111111 11 111111111 111111 11111 55555555555555 1111111111 111 3333333333333333333 111 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 1111 22222222222 11111 11111111111 33333333333333333333333333333333333333333333 11 11 333 111111 1 11111
lowQualScore : 2 6 999999999999 11 8 8 0 22 8 8 0 8 1 88 8 11 8 8 8 8 1 0 777777 8 88888 111111111 8 0 0 3 0 8 8 111 11 6 5 000 5 5 5 1 1 666666 77 77 1 777 1 6 3333333333333 0 8 99999 6 9 3 33333333333333 3 5 66 5 5 77 4444444 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 8 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 777 2 22222 4 3 2 22222222222222 2 33 1 3 0 6666666666 55 3 3 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 8 4 2 5 4444444444444444444 66 44 1 222 4 4 1 000000 0 4 55 3 3 3 1 7777 4 0 4444444 22 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 5 0000 5 33333333333 9999 777 22222 0 44444444444 0 4 8 55 1 88888888888888888888888888888888888888888888 6 00 99 6 1 44 3 6 1 99 6 99 333 1 6 444444 66 0 22222 4
lowQualScore : . . ............ .. . . . .. . . . . . .. . .. . . . . . . ...... . ..... ......... . . . . . . . ... .. . . ... . . . . . ...... .. .. . ... . . ............. . . ..... . . . .............. . . .. . . .. ....... . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . ... . ..... . . . .............. . .. . . . .......... .. . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . . . ................... .. .. . ... . . . ...... . . .. . . . . .... . . ....... .. ... . ... . . . . ........................................................... . .... . ........... .... ... ..... . ........... . . . .. . ............................................ . .. .. . . .. . . . .. . .. ... . . ...... .. . ..... .
lowQualScore : 5 7 555555555555 00 0 0 8 22 0 0 8 0 4 88 0 00 0 0 0 0 0 6 666666 0 22222 222222222 0 0 0 2 0 0 0 888 00 7 7 333 7 7 7 7 7 444444 11 99 7 888 0 7 0000000000000 8 2 66666 7 3 2 00000000000000 4 0 99 0 0 44 4444444 7 7 7 7 000 4 999999 9 3 11 11 22 888 4 2 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 000 9 99999 4 4 7 77777777777777 3 88 2 6 2 5555555555 00 6 6 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 9 4 9 4 1111111111111111111 11 77 0 666 0 0 0 888888 7 0 55 6 6 6 0 7777 0 8 7777777 77 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 0 6666 0 88888888888 4444 888 33333 4 99999999999 9 0 0 55 1 77777777777777777777777777777777777777777777 7 33 22 7 0 00 7 7 0 22 7 22 888 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT-----ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT---T-ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCAATACTGGGTTTTCTTTCA--TATA-GCTATTTACAATC-AATA-TTTCATTATGCT-GTAATCTGCATCGTATAAT--AATTGG-ACAAT--AATGAACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGT-G-T-TTTTTAAGGAAGCA-CATTGGTCTAGA----ATA--ATATAT-CTCCT-GT-TTCAAATATGCAACGTATCGG-ACTT-AATTCTT---GTTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGG-AAATG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAG-----------TATATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGAATT---CA-----TT--AAAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATAC-TTTTCAA-AAT-A-----TGTTCC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATA-CG-TCAGTGT--TCTTTTAGCTGAGCAT-GGACATATTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATATTTT-TTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGGCTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG---ATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCATC--ACAAGTATATGT-GTTAAC-ATTAAATA-AATCATTATACT-GCCATCTGCATTG-CTCAT-ACTTTGA-ACAAT--ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG------TTTGTATGTAA-CATTATTG---TAGACTTTATG--ATATGT--TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC---ATAA------------CA--TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGGT-TTTTTAAGGAA-CA-CAT-GGTCTAGA----ATACAATATATTCACCT-GT-T-C-AATATGCAACGTATCGGCAC-TGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGT-TGTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTGATGA------------------ACATCG--TT-GTTTGGAAAAC-----AAAATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT--CA-T----------TTTTAACTGCGCAT-GAGCAT-TAGT---A------TAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTGAAAA------------------CC--TGCTTC-TTCTGGGAAA-C--AAAAACTAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TTTTA-CTGCACAT-GAGGAT-TAGG---ACAATTTTAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : caAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCAC-T-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGT-AGTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGTGG---TCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|2 : GGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAAACTGCATCG-GTAAT-AAATTGG-ACAAT--AAAGAACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGT---T-TTCTTTAGGAA-AA-----GGCCTAAG----A------ATAT-CTCCC-TTCTTC-AATATGTAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAGTGTGT--------CATTCACTTC----TGGC-AATTTAAGCAATAAATCATACAGAATTAAATA-----TTTAAAAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATAT-TTTTTAA-TAT-ATCT--TGTTCT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCT--TT--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG-CA-TCA--GC--TCTTTTATCTGAGCAC-GGTCAT-TTGT---G------TACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT-ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------A-TTG----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT--TTG-A-T--AATA--G-----------------------------------------ATCTGACGTCAC-ATCGAAGATTTCAGATCTTA-AAGGCTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAG---ATGGGGAAAACTtgccatcacaatatattt
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CAATACT
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAAata
gi|25 : a---TGAC-AATTTAA-CAATAAATTATACAGAATT----------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATAC-Tg
gi|26 : cACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA--TAGTA-T--AATA--G-AT
gi|3 : GGGGTTAACAATTTC-CAATAC-------------A--TATA-GC-ATTTACAATAAAATA-TTTTATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--TAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGG-TATTTTTAACGAA-CC-CAT-GGTCTAGA----ATG--ATATAT-CTTCCTGT-TTC-AATAGGCAAGGTATCGGCAC-T-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGT-AGTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGTGT---TTATATATTCACAGCT----GGC-AATTTAAGCAATAAATCATACCGAATT---TAATATTTT--AAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AAT-A-----TGTTCT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCT--TT--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATA-CG-CCAGGGT--TCTTTTAGCTGAGCAT-GGACAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTAA-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATAC-ATGTATTCACAAC----TGGC-AATCTAAACAATAAATCAT------TT---TA---------AAAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATAC-ATTTTAA-AAT-ATGT--TGTTGT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TGAGCAC-GGGCAT-T--------------------------CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTTATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------A-TTG----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT----------------------T--AATA--G-ATA----------C-TTTATACAGCC----ACTC--T-GCAGCTGACGTCAC-ACTGAAGATTTCCAATCTTA-GAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAA--AGAG-ATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcatT-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCGTTTAGCTGAGTAT-GGGCAT-TTGG----------TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------A-CTAAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT--TTG-A-T--AAAA--G-AT
gi|5 : --TTG-AAT--AATACAGCACG----------C-TC--TGCAGCT----GGTAAGCCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcgg-AAGA------TAGTTACCTCTAACTTTCGTCT--TT--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT--C--------T--TCTTTTAGCTGAGTAT-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTGACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTA-TTC----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT--TTG-A-T--AAAA--G-AT
gi|6 : TT-TC----TTCGTTG-AAT--AATACAG-CCG----------C-TC--TGCAGCT----GGTAA-GCATATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAA--AG-TGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatcAACTATAGCATAC-ATTTG--GGAAA-GTTT-TTTTTAA---T----C--TGTTCTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCT--TAAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT-----TTA---T--TCTTTTAGTTAAGCAC-GGGCAT-TTTG---G------AATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTGACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAAA---------------T----A---ACA-TTC-AAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------A-TTG----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTG-TTG-G-TTGAA-A--G-ATA----------CAT-----CAGCTTTAAAATAG-TCAAGTCCGATGTCAT-TCCGAACGGTTCCGATCTT-GGGGGCTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GGAA--GT-C-GTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-T-A-TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC----------TG--------GGAT-CACA-CT--------AATTTAA--AA-ACATCATATAGA-------------TT--AAATAT-------TTAAAA-AC-ATTTT--GGTAA-ATGC-TTTTTAA-AAA-A--TGCTGTTGT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCT--TT--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGT--TAG-AC--CT-TCA---T--TCTT---ACTGA-CAC-GG--AT-TTGG---G------TACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-T-ACT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT--T---A-T--AATA----ATACTTTAACGCGC-TC--TGCAGCT-----GCA--TCA-ATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--AAAAATGCAAACTTCAACATACCATTTTTAGAAAATATAT-TTTTTAATAATTA--T--GTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCT--TT--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCA--GTACTTTTTTAACTGAGCATTGGACAT-TTGGCCGG------TACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
blockSeqs : C . TGGGTTTTCTTT AG T . TA G T . C TA T TT A T A A A TGGGT . TTATT CTTTATG T T C T . . G TCA GT C C TTT A . G T T CATGTA TC CT G AAA T T TTTATATACATG T T . G A AAATATTTA T C TA T T TA ATCT T T A TAG G TACATG C A . AA CT AGG T A T G ACT G A A GTCATCAAG TTGTG TAGTC G A T C CTT C CATAT A T T AACGGTCAGTAC A TT G . ACAATTT TC T C T GAT GA C T T TGAA A AC TTTTAA G T GGG A T TG ATT TC G C TA C T C C A G T TATNNNNNNNNNNNNNNNN CT TT A TAA A . T TGTCG T GA A T A A GTAC A TATAGA AC TGC A CTA C G A G GGATTTCTAAGCTTATACTAAATCATGTTT T AAAT T TTTATTCCATG ACTA TTT AGTAG AGCATCATTG T A TG T ATACTTTAACGCGCTCTGCAGCTGCATCA . GA . A C TT T C C TA G CG AG C T TACGAG AT C TCGTA G
blockSeqs : C . TGGGTCATCA . . . CA . . . G A . . . . . . T TGGTA . CAT ATACA . . . T . . . A . . . A . . . T A . T . A AAA G . TGTGTTTATA G T . G A TAATATTTT T . . . . T ATGT . . T . . CC A A . . GA . . G . . . . . A . GTG AACG . . . . . A CAT . A C ACGCCAGGGT T T G . CCGG . . . . G A . T . . . . . . . . . . T T C . . TG T A T . . G A A . G G TAA . . T TT . . . . . G . . TAAAT AA . . CTG . . . . CTTATATTAAATCTTGTTT . . . . . . ACAA TCTTCG . A . T CAGCACGCTCTGCAGCTGGTAAGCCAT . GG . . G T T . C . . . TG C . . . A . G
blockSeqs : C . . . . . TA . . . A A . . . . . . A TT . CAT ATG . . . . . . . A . . . A . . . T A . T . A AG T . TGTGT A T . A A TA T . . . . A ATGC . . A . . . C T . . . . . A . . . . . A . TA TACT . . . . . G AAA . A T GCATCAGC G T T . A . . . . A T . A . . . . . . . . . . . . T . . T C A C . . A T C . T T C . . T T . . . . . C . . GTTAA AA . . A . . . . GGATTTCTAAGCTTAT . . . . . . TA GCTT . . . T CAGCCGCTCTGCAGCTGGTAAGCAT . A . . G T A . G . . . TG A . . . . . G
blockSeqs : A . . . . . AA . . . G A . . . . . . C . . . A . . . A . . . T . . . A A . T . A A G . TGG . T . . . TT T . . . . A TAT . . A . . . C T . . . . . A . . . . . A . TA AAGT . . . . . T TTT . G C CTTCAT G C A . G . . . . G T . A . . . . . . . . . . . . C . . T C T C . . T T G . T T C . . T T . . . . . T . . GAAA TG . . . . . . . GGAGATT . . . . . . TA GCAA . . . A GATACATCAGCTTTAAAATAGTCAA . G . . G T A . G . . . C A . . . . . T
blockSeqs : C . . . . . . . T A . . . . . G . . . . . T . . . . A A . . . . . . C T . . . . . A . . . . . T . TA AACT . . . . . G CAT . G C TTAT G T G . G . . . . G A . A . . . . . . . . . . . . C . . G C T C . . G C G . N N C . . T T . . . . . T . . TAAA AA . . . . . . . GGGTTT . . . . . . TA GTTT . . . T GATACTTTATACAGCCACTCTGC . G . . C . . . T . . . . T . . . . . T
blockSeqs : . . . . . . . . . . . . . . . . C . . . . . . T A . . . . . T . . . . . C . AA CT . . . . . G CA . A C CAT G C G . G . . . . T A . A . . . . . . . . . . . . C . . T C T C . . G C G . T A N . . A T . . . . . A . . TAG AC . . . . . . . GGAATT . . . . . . TA GCTT . . . A G . . . . .
blockSeqs : . . . . . . . A A . . . . . C . . . . . A . T A . . . . . G AC . A T CT A T G . G . . . . T A . A . . . . . . . . . . . . A . . T T T C . . G C G . T A C . . A T . . . . . A . . . A . . . . . . . GGATT . . . . . . T TT . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . A . . . . . . AC . A . CT A T G . G . . . . T T . G . . . . . . . . . . . . A . . A . C . . . . . . . . T . . . . . . . . . . A . . . . . . . . . . . GAATT . . . . . . . T
blockSeqs : . . C A . . . . . . G . . . . . . . . . . . . . . . A . . A . . . . . . . . . . . . A . . . . . .
blockSeqs : C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C .
blockSeqs : . . .
blockSeqCons : ************ TA A* T***** CAT** ATG****** A** TGTGTG******* T**** TA************ ATC**** ** CAT*********** GATATCAGCCGCTCTGCAGCTGGTGCAT**************** G* ** T* TG*
originalCons : NGGGGTTAACAATTTC-CAATACTGGGTTTTCTTTCA--TATA-GC-ATTTACAATCAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG-T-TTTTTAAGGAA-CA-CATTGGTCTAGA----ATG--ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGT-----ATGTATTCACAGCT---TGGC-AATTTAAGCAATAAATCATACAGAATT---TA-----TT--AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AAT-A--T--TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT--CG-TCA--GT--TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATA--G-ATA----------C-TC--TGCAGCT----GGTA--TCACATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAGGAGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AG-T-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
finalCons : NGGGGTTAACAATTTC-CAATAC------------CA--TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGATA-AATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGT-----TTTTTAAGGAA-CACAT--GGTCTAGAATG------ATATAT-CTCCC-GT-TTC-AATATGCAACGTATCGGCAC-T-AATTCTTA--ATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGT-AGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGTGTG-------TATTCACAGCT----GGC-AATTTAAGCAATAAATCATACAGAATTTA------------AAAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATAC-TTTTTAA-AATATC----TGTTCT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCT--TT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCATCAT-----------TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTGACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT--TTG-A-T--AATAGATATCAGCCGCTCTGCAGCTGGTGCAT----------------ATCTGACGTCAC-ACCGAAGGTTTCCGATCTTAG-AGGCTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCAT-TGATACA-GCAATAGCTTT--GAAACAGAT-GGAA--AGTG-ATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|17 ): GACATTGTAATATTTGTAGGATTGACCTTTTCTTCTAATTGGATCATCACTAATTAGTATATATATGTGATCACATTAAATATATCTTTACACTGCCATCTACATTGATCATACTTTGAACAATATTAAACA
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA
Alignments
lowQualScore : 11111 88888888888888888888888888 44444 11 222222222 1 1 1 1 11 11 222 111111 66666666666666 1111 2222222222222222222222 222 111 111111 11 111111111 111111 11111 55555555555555555555 1111111111 111 3333333333333333333 111 111111 1111111 222 66666666666666666666666666666666666666666666666666666666666 1111 22222222222 11111 1111111 6666666666666666666666666666666666666666 11 111111 1 11111
lowQualScore : 2 33333 11111111111111111111111111 8 8 0 6 6 6 3 6 7 6 99 8 8 8 8 1 0 55555 8 8 11 8 3 111111111 8 0 0 3 0 6 11 0 11 6 5 000 5 5 5 5 1 1 666666 77 77 1 777 1 6 3 00000000000000 0 8 4444 6 9 8888888888888888888888 3 5 66 5 5 77 1 777 5 5 5 0 8 000 4 888888 2 2 66 66 22 777 4 8 4 4 777 4 4 2 777777777 444444 88888 4 4 4 4 777 2 22222 4 3 88888888888888888888 2 33 1 3 0 6666666666 55 3 3 3 555 88 3 1 3 7777 3 44 999999 3 3 666 3 3 88 000 66 3 3 77 4 1 1 0 4 4 77 5 4444444444444444444 66 44 1 222 4 4 1 000000 0 4 55 3 3 3 1 7777 4 0 4444444 22 777 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 5 0000 5 33333333333 9999 777 22222 0 3333333 5 3 5 55 1 5 2222222222222222222222222222222222222222 6 6 6 99 6 1 44 3 6 1 99 6 3 1 6 444444 66 0 22222 4
lowQualScore : . ..... .......................... . . . . . . . . . . .. . . . . . . ..... . . .. . . ......... . . . . . . .. . .. . . ... . . . . . . ...... .. .. . ... . . . .............. . . .... . . ...................... . . .. . . .. . ... . . . . . ... . ...... . . .. .. .. ... . . . . ... . . . ......... ...... ..... . . . . ... . ..... . . .................... . .. . . . .......... .. . . . ... .. . . . .... . .. ...... . . ... . . .. ... .. . . .. . . . . . . .. . ................... .. .. . ... . . . ...... . . .. . . . . .... . . ....... .. ... . ... . . . . ........................................................... . .... . ........... .... ... ..... . ....... . . . .. . . ........................................ . . . .. . . .. . . . .. . . . . ...... .. . ..... .
lowQualScore : 5 22222 55555555555555555555555555 0 0 3 7 7 7 7 7 8 7 22 0 0 0 0 0 6 88888 0 0 22 0 8 222222222 0 0 0 2 0 0 00 8 00 7 7 333 0 7 7 7 7 7 444444 11 99 7 888 0 7 2 66666666666666 8 2 2222 7 3 4444444444444444444444 4 0 99 0 7 44 4 333 7 7 7 7 7 000 4 999999 9 3 11 11 22 888 4 2 4 4 888 4 4 0 888888888 000000 00000 4 4 4 4 000 9 99999 4 4 77777777777777777777 3 88 2 6 2 5555555555 00 6 6 6 555 44 6 5 6 7777 3 66 666666 6 6 444 6 6 66 000 55 6 6 44 3 5 6 8 4 4 33 4 1111111111111111111 11 77 0 666 0 0 0 888888 7 0 55 6 6 6 0 7777 0 8 7777777 77 888 4 000 4 4 4 4 88888888888888888888888888888888888888888888888888888888888 0 6666 0 88888888888 4444 888 33333 4 2222222 0 4 0 55 1 0 3333333333333333333333333333333333333333 7 7 7 22 7 0 00 7 7 0 22 7 7 0 7 444444 99 0 55555 3
consensus : NGGGGTTAACAATTTC-CA--AT------AC------------CA----TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATNAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGTGG--TTT-TTAAGGAA-CA-CAT-GGTCTAGA----ATG--ATATAT-CTCCC-GT-TTCAA-TATGCAACGTATCGGCACT-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGT------GT----GTATTCACAGCTG----GCAA-TTTAAGCAATAAATCATACAGA-------ATTTA--A-------AAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATACTTTTT-AA-AATAT-C-TGTT-CT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCTT--T--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT---------C-A---T----TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTG-ACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT-TTG-AT--AATAGATA---------CAGC-CGCTCTGCAGCTGGT--G---CAT--ATCTGACGTCAC-ACCGAAGGTTTCCGATCTTA-GAGG-CTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAAAGTGATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
Reference ( family-199 ) : NGGGGTTAACAATTTC-CA--AT------AC------------CA----TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--AAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGACAAGTAAGT----TTT-TTAAGGAA-CA-CAT-GGTCTAGA----ATG--ATATAT-CTCCC-GT-TTCAA-TATGCAACGTATCGGCACT-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--AATAGAAATTATGATTTTAATTGAATNTGAATTTCAGCCA-TATTTGTAGATATATTTTCAGTGTAGTGT------GT----GTATTCACAGCTG----GCAA-TTTAAGCAATAAATCATACAGA-------ATTTA--A-------AAAATGCAAACTTTAACATAC-ATTTT--GGAAA-ATACTTTTT-AA-AATAT-C-TGTT-CT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTCTAACATTCGTCTT--T--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ACGGT-ACGTCAGGCACAGCAT---------C-A---T----TCTTTTAGCTGAGCAC-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TA-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTG-ACGA------------------GCATTG--TC-TTTTGGNAAACC--AAAAAATGACAC-AT-TTT-T----ATCTACA-TTTGAAGAG--GTAGAACAATT-ATAA-AC-CNCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GC----TT-TTG-AT--AATAGATA--T------CAGC-CGCTCTGCAGCTGGT--G---CAT--ATCTGACGTCAC-ACCGAAGGTTTCCGATCTTA-GAGG-CTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTATCANCTCA-TTGATACA-GCAATAGCTTT--GAAACAGAT-GGAAAGTGATGGGGAAAACTGCGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|1 : GGGGTTAA-AATTTCGCA--AT------ACTGGGTTTTCTTTCA----TATA-GCTATTTACAATCAA-TA-TTTCATTATGCT-GTAATCTGCATCGTATAAT-AA-TTGG-ACAAT--AATGAACAAAGTGCA-TTTCGTTTT-CAATTAA-TAATCTGCATGTA-TGACAAGTAAGTGT--TTT-TTAAGGAAGCA-CATTGGTCTAGA----ATA--ATATAT-CTCCT-GT-TTCAAATATGCAACGTATCGG-ACTTAATTCTT--G-TTTGG--TTAAGATT-GATCT-TTCTGACCTTTTT--AATGGAAA-TG-TAAGCAAGTCTT-GCAATTTTTACTA------TAT-CATTATTATTA--TATAGAAATTATGATTTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATGTTTTCAGTGTAGTAT--------------ATTCACAGCTGCATGGCAAATTTAAGCAATAAAGCATACAGA-------ATTCATTA-------AAAATGCAAACTTTAACAAAC-ATTTT--GGAAA-ATACTTTTC-AA-AATAT----GTT-CC-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTACCTATAACATTCGTCTACAT--TTCTGTATG--CTC---CA-CGT-GATG-A---CA-A-TAT---------TTT-T---ATTAGTA-AACTTTTGTA-CTA-T-C-ATTG---TTGGTTAACC--ATGGT-ACATCAGGTACAGCATACGT-----C-AGTGT----TCTTTTAGCTGAGCAT-GGACATATTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-AATATTGACTTG-GGGAAAAG-T----GCT-TA--TC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-TTTTTATGA------------------GCATTG--TC-TTTTGGTAAACC--AAAATATGACAC-ATATTT-T----ATCTTTA-TTTGAAGAG--GTAGAGCAATT-TTAA-AT-CTCACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-A-T-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATCTGTTT-GC----TT-TTG-AT--AATAGATA----------------CTCTGCAGCTGGT--AT--CAC--ATCTGATGTCACTGCCCAAGGTTCCGGATCTTAGGAGG-CTTCAGATATGCGGCAATTG-AAGTCACGTGT-TAATCACCTCA--TGATACA-GCAATAGCTTT--GAAACAGAT-GGAAA--GATGGGGAAAACTATGCAGAGTTGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGA-----AGTGTTTTTGTGATTGTGTCACATGTCCTTTAA
gi|10 : aGGATTAACAATTTT-CCTTATTGGGTCAT------------CACAAGTATATGT-GTTAACA-TTAAATA-AATCATTATACT-GCCATCTGCATTG-CTCAT-ACTTTGA-ACAAT--ATAATACAAAATGTT-TTTCATCTT-CAATAAA-CAATCTACATGAA-CAGCAAAGACG-----TTT-GTATGTAA-CATTAT-TG--TAGACTTTATG--ATATGT--TCC
gi|11 : atatactttatattgacaattaccatgttagcatacagtcatgaaaagtacaataacaaaattaaacagatcaatgtagatatataaaatcactgaagatgtacaaatagatcttttaacatttactcttgattttcttttcttaatttaaagcaagttttcaagtaacaacatgttcttcttgcatttgtaatatttgtaGGGGTTAACAATTTC-----AT------AA------------CA----TATA-GC-ATTTACAATCAAATAGTTTCATTATGCTTGTAATC-GCATCG-ATGATTAAATTGGTACAATTTAAAGAACAAAGTGCAATTTCGTTTTTCAATGAAATAATCTG-ATGTAATGACATGTAAGTGGGTTTT-TTAAGGAA-CA-CAT-GGTCTAGA----ATACAATATATTCACCT-GT-T-CAA-TATGCAACGTATCGGCACTGAATTCTT--AATTTGGGTTCAAGATT-GGACTCTTCTGACTTTTTA--AATGGAAAATG-TAAGTT-GTCTTGGCAATTTTT-CTG------TATCCATTATTATTA--
gi|12 : tcatttagctggcatattttcattcaagcaattgttgattatgtattctgT-TA--CC------ACAA-ATTCT---TAATTACA-CTTT-GTCA---CAACA-----T-TTT-CCTTTTAACACTTATGAATCCATA-TATATTTG-ATGA------------------ACATCG--TT-GTTTGGAAAAC-----AAAATAACAC-AT-TTT-T----ATCTACA--TTGAGAAG--GTAGAAGGATT-ATAATACACACACAGTACGTAC-ACCACGCCTGTCACGC--GAAA-TACCC---G-TTCTATAGA-AACA-GAAAG-G--------------G--G-A-T-----------T-------------------------
gi|13 : ---TTCGTTACCC--A-----ACTTTGGGTACAGCAT---------C-A---T----T--TTTAACTGCGCAT-GAGCAT-TAGT---A------TAACC--TGATT-CAGATAAC-CGGGGTGGATA--ATG--AGAATATTGATCTG-GCGTAAAT-T----TTT-CC--CC------ACAT-AT-TT---TA-CTGTA-TTT---CCT---TAATG-CAAGG-TCTATTCTATGATAGTAATCTACTTGTGCTTT-TTTG-AAAA------------------CC--TGCTTC-TTCTGGGAAA-C--AAAAACTAA-AA-AT-TTT-------GCCGCT-TTTGAAGAA--CTTGAACAATT-ATAA-AC-AGCACA----ATAtctaatcaagcttccaaatttcaataaatcattatattacatataggctttaaaacaatt
gi|15 : TTTTA-CTGCACAT-GAGGAT-TAGG---ACAATTTTAACC--TAATT-CAGCTAAC-CTGGGTGGATA-ACGA--A-AATATTGATCTG-GCATAAAG-T----GTT-TC--CC------ACAT-AT-TT---TA-CTGTATTTT--GTTAATTCAAGG-TA----TCT-T-CTACGGCAGTAATAAA
gi|15 : caAAAAAGGACAA-AC-TTT-TGTCGATCCACT-TTTGAAGAG--CTTGAACAATT-CTAA-AC-ACCACA----ATAC-aaggacaaacttttgtcgatccacttttgaagagcttgaacaattctaaacaccacaatac
gi|16 : cattttactgcacatgaggattaggacaattttaacctaattcagctaacctgggtggataacgaaaatattgatctggcataaagtgtttcccacatattttactgtattttgttaattcaaggtatcttctacggcagtaatGGCACT-AATTCTCTCAATTTAG--CTAAGATTCGATCT-T-CTGACTTTTTTTTAATGGAAA-TG-TAAGTA-GTCTT-GCAATTTTTTCTA------TAT-CATTATTTGCA--AGTGG---TCGCGCAATTAATTGAATTTAAATTTCAGCCATTATTT
gi|17 : ATTAAATA-TATCTTTACACT-GCCATCTACATTG-ATCAT-ACTTTGA-ACAAT--Atgccatcacaatatattt
gi|2 : gacattgtaatatttgtaggattgaccttttcttctaattggatcatcactaattagtatatatatgtgatcacGGGGTTAACAATTTC-CA--AT------ACTGGGTTTTCTTTCA----TATA-GC-ATTTACAATTAAATA-TTTCATTATGCT-GTAAACTGCATCG-GTAAT-AAATTGG-ACAAT--AAAGAACAATGTGTA-TTTCGTTTT-CAATGAA-TAATCAGCATGTA-TGACAAGTACGT----TTTCTTTAGGAA-AA-----GGCCTAAG----A------ATAT-CTCCC-TTCTTCAA-TATGTAACGTATCGGCACT-AATTCTT--AATTTGG--TTAAGATT-GATCT-TTGTGACTTTTTA--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACCA----------CATTATTATTA--GAT----ATTATGATTTTAATTGAATGATAATCTCAGCCA-TATTTGTAGATTTATTTTCAGTATAGTGT------GT-----CATTCACTTCTG----GCAA-TTTAAGCAATAAATCATACAGAATTAAATATTTA--A-------AAAATGCAAACTTTAACGTAC-ATTTT--GGAAA-ATATTTTTT-AA-TATAT-CTTGTT-CT-AT-ATGAAAATAACAT---GTATGTTT-AATATACATGTAATTACCTCTAACATTCGTCTT--T--TTCTGTATGCTCTC---CA-CAT-GATG-A---CA-A-TAT---------TTT-T---ATTGGTA-AACGTTTGTA-CTA-T-C-ATTG---TTAGTTACCCATATGGT-ACATTAGGCACAGCATG--------C-A---TCAGCTCTTTTATCTGAGCAC-GGTCAT-TTGT---G------TACCC--AAGTT-CAGATAAT-CTGAATGAATG-TC-----------TGACTTG-GGAAAA---------C--------------------T-CT---TC-CTATG-CTT--GTCA---CAACA-CAA-T-TCG-TCCTTTGACAATAATGAATCCATA-TTT-TTT--ATGA------------------GCATTT--TC-TTTTGGTAAACC--AAAGCATGACAC-AT------------------TTTGAAGAG--GTAGAGCAATT-ATAA-AC-CTCACA----GTAT-ACCATTTATGCT---------------T---G-TT---TAGA-AACA-G-AAT-G--------------GGAG-A-T-----------T-------------------------A-TTG----C-ATG-----------GAATCTAAAACC----A-----------AA--------AAGATCTGTTT-GC----TT-TTG-AT--AATAGA-------------------TCTG------------------------ACGTCAC-ATCGAAGATTTCAGATCTTA-AAGG-CTTCAGATATGGAT--ATTG-AGGTCATGCGTCTTATTACCTTA-TTGATACA-GCGATAGCTTT--GACACAGAT-GGAACGAGATGGGGAAAACTttaaaca
gi|23 : ttgagttacatatttttcaagcaattgttatattttgGGGGTTAAACATTTC-CA--AT------AC------------TA----TA
gi|24 : caatcctcgactcatttaagctagatttttcgcttgttattgatatctgGGA-GTGATCACA-TACA------TAATTTCTGCATTGTTGTGATCGTAAGTATTTTTGT--TGGTGTCACATGTCCTTTAA
gi|25 : aCTG----ACAA-TTTAA-CAATAAATTATACAGA-------ATT-------------GAATACTAAATGTAA---AC-ATTTT--GGAAA-ATACTg
gi|26 : ACA------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTTA
gi|27 : A------TA--TTGTG-ATTGTTGTGA-----AGTGCATTTGTGATTGTGTCACATGTCCTTT
gi|28 : AACC----ATTAGTGC---CAAT--T--ACAAGATTTGTTT-GC----AA-TAGTAT--AATAGAT
gi|3 : GGGGTTAACAATTTC-CA--AT------AC-------------A----TATA-GC-ATTTACAATAAAATA-TTTTATTATGCT-GTAATCTGCATCG-ATGAT-AAATTGG-ACAAT--TAAGAACAAAGTGCA-TTTCGTTTT-CAATGAA-TAATCTGCATGTA-TGGCACGTAAGTGGTATTT-TTAACGAA-CC-CAT-GGTCTAGA----ATG--ATATAT-CTTCCTGT-TTCAA-TAGGCAAGGTATCGGCACT-AATTCTT--AATTATG--TTAAGATT-GATCT-TTCTGACTTTTT---AATGGAAAATG-TAAGTA-GTCTT-GCAATTTATACTA------TAT-CATTATTATTA--AACAGAAATTATGATCTTAATTGAATTTGAATTTCAGCCA-TATTTGTAAATATATTTTCAGTGTAGTGT------GTTTATATATTCACAGCTG----GCAA-TTTAAGCAATAAATCATACCGA-------ATTTA--ATATTTTAAAAATGCAAACTTTAACATAC-ATTTT--ATAAA-ATACTTTTTTAA-AATAT----GTT-CT-AA-ATCAAAATTACAT---GTATGTTT-AAAA------TAGTTACCTATAACATTTGTCTT--T--TTCTGTATG--TTC---CA-CGC-AATG-A---CA-A-TAT---------TTT-T---ATTGGTG-TACTTTTGTA-CTA-T-C-ATTG---TTGGTTACCC--ATGGT-ACATCAGGTATAGCATACGC-----C-AGGGT----TCTTTTAGCTGAGCAT-GGACAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAG-T----GCT-TA--CC------ACAA-AT-CT---TG-CTATG-CTT--GTCA---CAATA-CAA-T-TCT-T-------CAATA-------------TT-TTTA-A-AA--------------------ATTG--TC--TTTGGTAAACC--AAAACATGACACAAA-TTT-T----ATCTACA-TTTGAAGAG--GTAGAGCAATT-TTAA-AC-CTCACA----GTACAACCATTTCTGCTAT---------TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--G-GTT-----------T-------------------------A-TTG----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-CCAA
gi|4 : tgctcatttaagctgcatatctttcaagcaattgttatcacattcttATT-GATCT-TTCTGACTTTTTT--AATGGAAAATG-TAAGTA-GTCTT-GCAATTTTTACTACATGTATAT-CATTATTATTG--AATAGAAATTATGATTTTAATTGAATGTGAATTTCAGCCA-TATTCGTAGATATATTTTCAGTGTAGTTTATATACAT----GTATTCACAACTG----GCAA-TCTAAACAATAAATCAT-------------TTTA--A-------AAAATGCAAACTTTCACATAC-ATTTT--GGAAA-ATACATTTT-AA-AATATGT-TGTT-GT-AA-ATCAAAATAACAT---GTATGTTT-AAAA------TAATTAC-------------CTT--T--TTCTGTATG--CTC---CA-CAT-GATG-A---CA-A-TAT---------TCT-T---ATTAGCA-AAGTTTTGTA-CTA-T-C-ATTG---acttaa
gi|4 : TGAGCAC-GGGCAT-T--------------------------CAGCTAAT-CTGAATGGATG-TCTG--A-TATATTGACTTG-GGGAAAAT-T----GCT-TA--CC------ACAA-AT-CT---AC-CTATG-CTT--CTCA---CAACA-CAA-T-TCT-TCCTTTGACAATAATGAATCCATA-TTT-CTTT-ATGATATNNNNNNNNNNNNNNNNNNNNN--NN-NNNNNNNNNNNN--NNNNNNNNNNNC-AT-TTTTT----ATCTACA-TTCGAAGAG--GTAGAGCAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAA-TAACT---G-TT---TAGA-AACA-G-AAT-G--------------G--GAA-T-----------T-------------------------A-TTG----C-ATG-----------GACTCAAAAACC----ATTAGTGC---CAAT--TA-ACACGATT--------------------T--AATAGATA--CTTTATACAGC-CACTCTGCAG------------------CTGACGTCAC-ACTGAAGATTTCCAATCTTA-GAGG-CTTCAGATATGCAT--ATTG-AGGTCACGCGTCTTACCAGTTCA-TTGATACA-GCAATAGCTTT--GAAACATAT-GGAAAGAGATGGGAGAAACTGCGCAGAGATGTTATCACA-TACATACGAGTA--TTCTG-ATTGTTATGA-----AGTGTTTTTGTGATTGTGTCACATGagcacgggcattcagctaatctgaatggatgtctgatatattgacttggggaaaattgcttaccacaaatctacctatgcttctcacaacacaattcttcctttgacaataatgaatccatatttctttatgatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattttttatctacattcgaagaggtagagcaattataaaccacacagtacaccatttctgctacactaaataactgtttagaaacagaatgggaattattgcatggactcaaaaaccattagtgccaattaacacgatttaatagatactttatacagccactctgcagctgacgtcacactgaagatttccaatcttagaggcttcagatatgcatattgaggtcacgcgtcttaccagttcattgatacagcaatagctttgaaacatatggaaagagatgggagaaactgcgcagagatgttatcacatacatacgagtattctgattgttatgaagtgtttttgtgattgtgtcacatg
gi|5 : attgatctttctgacttttttaatggaaaatgtaagtagtcttgcaatttttactacatgtatatcattattattgaatagaaattatgattttaattgaatgtgaatttcagccatattcgtagatatattttcagtgtagtttatatacatgtattcacaactggcaatctaaacaataaatcattttaaaaaatgcaaactttcacatacattttggaaaatacattttaaaatatgttgttgtaaatcaaaataacatgtatgtttaaaataattacctttttctgtatgctccacatgatgacaatattcttattagcaaagttttgtactatcatT-AAGA------TAGTTACCTCTAACTTTCGTCTT--T--TTCTGTATG--CTC---CA-CATTGATGGA---TG-A-TAT---------TTT-TTGTGTTAGTA-A----TTGTA-CTA-T-CCACAG---CTTGTTACC---ACGGG-ATGTCAGGCACAGCAT---------C-----T----TCGTTTAGCTGAGTAT-GGGCAT-TTGG----------TACCC--AAGTT-CAGCTAAT-ATGGATAGATG-TCTT--A-AGTATTGAATGT-GTGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTAGT-TTT--GTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTG-ACAA------------------GCATTG--TC-TTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACA-TTTGAAGAGGAGTAGAACAATT-ATAA-AC-CACACA----GTAC-ACCATTTCTGCTACAC--TAAATTTGCT---G-TT---TAGA-AACAGG-AAT-G--------------G--G-A-TTTCTAAGCTTAT-------------------------A-CTAAAATC-ATGTTTATTCCATGGACTCTAAAACC----ATTAGTGC---CAAT--TA-AC-AGATTTGTTT-------TT-TTG-AT--AAAAGAT
gi|5 : --AATA-ATA---------CAGCACGCTCTGCAGCTGGT--AAGCCAT--ATCTGACGTCAC-ACCGAAGGTTTCCGATCTTA-GAGGCCTTCAGGTATGCAT--ATTGAAGGTCACGCGTCTTATCAGCTCATTTGAAAAACGGAATAGCTTTTAGAAACAGATGGGAAAGTGATGAGGAAAAATGTGCAGGGATGTTATCACATTACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGT-TCACATGTCCTTTgaaaataatttagtattctttcttcggttgaataatacagcacgctctgcagctggtaagccatatctgacgtcacaccgaaggtttccgatcttagaggccttcaggtatgcatattgaaggtcacgcgtcttatcagctcatttgaaaaacggaatagcttttagaaacagatgggaaagtgatgaggaaaaatgtgcagggatgttatcacattacatattctgattgttgtgtagtgtttttggtattgttcacatgtccttt
gi|6 : taagatagttacctctaactttcgtctttttctgtatgctccacattgatggatgatattttttgtgttagtaattgtactatccacagcttgttaccacgggatgtcaggcacagcatcttcgtttagctgagtatgggcatttggtacccaagttcagctaatatggatagatgtcttaagtattgaatgtgtgaaaagtgcttaccacaaatcctactagttttgtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtcttttggaaaactaaaaaaaatgacacattattatctacatttgaagaggagtagaacaattataaaccacacagtacaccatttctgctacactaaatttgctgtttagaaacaggaatgggatttctaagcttatactaaaatcatgtttattccatggactctaaaaccattagtgccaattaacagatttgtttttttgataaaagatgaaaataatttagtattctttcttcggttg-AAGA------TAGTTACCTCTAACTTTCGTCTT--T--TTCTGTATG--CTC---CA-CAT-GATG-A---TAGA-TTT---------TTTGT---GTTAGTA-A----TTGTA-CTA-T-C-ACAG---CTGGTTACC---ACGGG-ATGTCAGGCACAGCAT---------C-----T----TCTTTTAGCTGAGTAT-GGGCAT-TTGG---G------TACCC--AAGTT-CAGCTAAT-CTGGATAGATG-TCTT--A-AGTATTGAATTGCGGGAAAAG-T----GCT-TA--CC------ACAA-AT-CC---TA-CTATG-TTTTGGTCA---CAACA-AAA-T-TCA-TCCTTTGA-AATAATGAATCCATA-TTT-TTTG-ACAA------------------GCATTG--TCTTTTTGGAAAACTAAAAAAAATGACAC-AT-TAT-T----ATCTACATTTTGAAGGA--GTAGAACAATTAATAA-AC-CACACA----GT-C-ACCATTTCTGCTACAC--TAG---AATTTGCG-TTA--TAGA-AACA-G-AATGG--------------G--G-A-T-----------TTCTAAGCTTATACTAAATCATGTTTA-TTC----C-ATG-----------GACTCTAAAACC----ATTAGTGC---CAAT--TA-ACAAGATTTGTTT-GT----TT-TTG-AT--AAAAGAT
gi|6 : --AATA-ATA---------CAGC-CGCTCTGCAGCTGGTAAG---CAT--ATCTGACGTCAC-ACCGAAGGTTTCCGATCTTA-GAGG-CCTCAGGTATGCAT--ATTG-AGGTCACGCGTCTTATCAGCTCA-TTGAAAAC-GGAATAGCTTT--GAAACAGAT-GGAAAGTGATGAGGAAAAATGTGCAGGGATGTTATCACA-TACA------TA--TTCTG-ATTGTTGTGT-----AGTGTTTTTGGTATTGTGTCACATGTCCTTTgaaaataatttagtatctttcttcgttgaataatacagccgctctgcagctggtaagcatatctgacgtcacaccgaaggtttccgatcttagaggcctcaggtatgcatattgaggtcacgcgtcttatcagctcattgaaaacggaatagctttgaaacagatggaaagtgatgaggaaaaatgtgcagggatgttatcacatacatattctgattgttgtgtagtgtttttggtattgtgtcacatgtccttt
gi|7 : aagatagttacctctaactttcgtctttttctgtatgctccacatgatgatagattttttgtgttagtaattgtactatcacagctggttaccacgggatgtcaggcacagcatcttcttttagctgagtatgggcatttgggtacccaagttcagctaatctggatagatgtcttaagtattgaattgcgggaaaagtgcttaccacaaatcctactatgttttggtcacaacaaaattcatcctttgaaataatgaatccatattttttgacaagcattgtctttttggaaaactaaaaaaaatgacacattattatctacattttgaaggagtagaacaattaataaaccacacagtcaccatttctgctacactagaatttgcgttatagaaacagaatggggatttctaagcttatactaaatcatgtttattccatggactctaaaaccattagtgccaattaacaagatttgtttgtttttgataaaagatgaaaataatttagtatctttcttcgttgAACTATAGCATAC-ATTTG--GGAAA-GTTTTTTTT-AA-----T-C-TGTT-CTTAA-ATCAAAAT---------TATATTT-AAA-------TAACTGTCACTAACTTTTGCCTT--AAATTCTGTATG--TTC---CA-CTT-GACG-A---TA-A-T-----------TTT-T-------------CTTTTTTAGTTA-TTC-AATT---TAGGCTACCA--AAGTT-ACATCAGGCACAGCAT---------TTA---T----TCTTTTAGTTAAGCAC-GGGCAT-TTTG---G------AATTT--GAGTT-CACCTAAA-CAGTATTGATG-TCTT--A----ATTAACT---------------------------------ACAA-AC-CTGGGTA---ATC-GTT--ATCA---CAACA-AAA-T-------------CAATA---AATCCATA-TTG-TTTG-ACGA------------------GCATTG--TC-TTTTGATAAAAC--AAAAA---------------T----A---ACA-TTC-AAAAG--GTAGAACAATT-ATAA-AC-CACACA----ATAC-ACAATTTTTGCTACACTATAGA-TACTT---G-TTCTGTAGA-AACA-G-AAC-GCTTATATTAAATCTT--G-T-T-----------T-------------------------A-TTG----C-ATG-----------GGCTTTAAGACTACTAACTAGTACTTTTGATAGTAGATGAGATTAACTTAGCATCATTGTTG-GTTGAA-AGATA---------CATC-AGCTTTA-AAATAGT------CAA--GTCCGATGTCAT-TCCGAACGGTTCCGATCTTG-GGGG-CTTCAGA-ATACAT--ATTG-AGGTCACATGTCTTATCACCTCA------ACA-GTAAC-----------ACAGAT-GG-AAGTCGTGGGGGAAAT--CACAAAGATTTTATCACA-GACA------TA--TTCTGAATGGTTGTGA-----AGTGTTTTTG
gi|8 : T-TTCTGACTTTTT---AATGGAAAATGATAA-TA--TCTT-GCAATTT--ACTA------TA---ATT-TTATTACTAATAGAG-TTATGATTTTA-TTGAATGTGAATTTCAGCCA-TATTGGTAGATATATTTC----------T------GG----G-AT-CACA-CT-------AA-TTTAA--AA-ACATCATATAGA---------TTA--A-------ATA--------TTTAAAA-AC-ATTTT--GGTAA-ATGCTTTTT-AA-AAAATGC-TGTT-GT-AATAT-AAAAT---AT---G------T-AAAACC----TTATTACTGTTAACATCGATCTT--T--TCATGT-TG--C-C---TA-C-T-GATG-AACTCA-A-TCT---------TTT------TTAGTA-AACTTTTGTA-CT--T-C-ACTT---TT--TTACCT--TTGGTAACATCAGTTAGACCTT---------C-A---T----TCTT---ACTGA-CAC-GG--AT-TTGG---G------TACCC--AA-TT-CAGCTGATCCTGAATGGAT--TATGATA-AAT-TTTATTTG-GG--AAAGTT----GCT-TAACCC------AC
gi|8 : ACAATA-ATAA-AC-TCTACA----CCAA-ACCATTTTTGCGTCACG-TTAA-T-ACT---GATT---TAGACAGCC-G-AAT-G--------------G--A-A-T-----------T-------------------------ATTTG----CTATG-----------ATAACTAAACCT----ATTAGTGC---CAATACAA-ACAAGA-TTGTTT-GC----TT-T---AT--AATA-ATACTT------TAACGCGCTCTGCAGC---T--G---CATCAATCTGAtctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctcttacaataataaactctacaccaaaccatttttgcgtcacgttaatactgatttagacagccgaatggaattatttgctatgataactaaacctattagtgccaatacaaacaagattgtttgctttataataatactttaacgcgctctgcagctgcatcaatctgatcctgcttcgtctttccgaggtccc
gi|9 : tttctgactttttaatggaaaatgataatatcttgcaatttactataattttattactaatagagttatgattttattgaatgtgaatttcagccatattggtagatatatttctgggatcacactaatttaaaaacatcatatagattaaatatttaaaaacattttggtaaatgctttttaaaaaatgctgttgtaatataaaatatgtaaaaccttattactgttaacatcgatcttttcatgttgcctactgatgaactcaatcttttttagtaaacttttgtacttcacttttttacctttggtaacatcagttagaccttcattcttactgacacggatttgggtacccaattcagctgatcctgaatggattatgataaattttatttgggaaagttgcttaacccactctctacgtagacacatatcattgaatacatttttcttaatctctgtttattgataacctcgcatcctctt--A-------AAAATGCAAACTTCAACATACCATTTTTAGAAAATATATTTTTT-AATAAT-T-A-TGTTTCT-AA-ATCAAA-TAACACTAGGTATGGTTGAAAA------TAATTACCTATAACATTCGTCTT--T--GTCTGTATGGACTCAGGCATCCT-AAT--A---CA-AATATGTCATCAAGTTT-A---ATTCGTTTAGTCTTTGTA-TTAAT-C-ATTGCTTTTGGTT-CCC--ATGAT-ATATCAGGTACAACATAACGGTCAGT-A---C----TTTTTTAACTGAGCATTGGACAT-TTGGCCGG------TACCCTCAAGTTTCAGCTAAT-CTGAAT-GATGTTCTG--A-TA-ATTGACTTT-AGGGAAAG-TTGAAGCTATA--CCTTTTAAACAAGAT-CT---TG-CTATG-C-T--GTCAT--CAACATCAA-TCTCTGTTCTCTGtcctgcttcgtctttccgaggtccc
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CAATATATGAAATGAGATTGAATAACTTTTATTTTGACAATTACAATGTTGGCATACAGTCATAAACAATTGATAGTACAATGATAACAAAATTAAACAGATCAATGCATACTAAACACAAAGTATATGCAGAATCCAAAAATAATGCAATGAACATGTATATATTCATGTACACATGTATATTCATTGCAGACTTTCTTTTCTTATATCAACGCAGGTTTTCAATAAACAACAGGGCCTTCTTGCAGTTAGGT
Unaligned ( gi|18 ): TCACTAGTATGTGTGTTCGCATTTAACATATCATATCTGTTTTGATCAAACTTGAACAATATAATACAAAATGTTTTTCATCCTCAGTAAACAATCTAGTATTCACAACACAA
Unaligned ( gi|19 ): CTGCACTATATATAGATAGCTTTATTGACAATTACCATGTTGGCATACAGTCATGAATAGTACAATAACAAAATTAAACAGATCAATGTAGATGTATAAAATCAAAAAAT
Unaligned ( gi|20 ): ATTACTATGTCGGCATATAGTCATGGACATTAATAACACAGATTAATGCGTACTAAATACGAGGTACATACAAAGTTAAAAAATACT
Unaligned ( gi|21 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|22 ): ATAATAGATGGGAATTTATTTAGTATCATTGTTGGTTGTAAGATGGAGCCACTTGAAGCGTTAGTCAAGTTCGAGTTTC
Unaligned ( gi|29 ): TTGGGTCATCACAAGTATATGTGTTAA