lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111111 11111111111111111111111111 11111111111111111111111111111111111111111111111111111 111111111111111111111111111111111 1111111111111111
lowQualScore : 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 2222222222222 11 555555555555555555555555555 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 1 111 33 11 2 55 111111 1111 1 1 111 3333333 11 111 6666666666666666666666 2 1 1111 111 3333333 1 55555555555 2222 44444 1 1 33 22 1 2 1 11 1 1 666 33333 4 777777777777777777777777 1 1 2 555555 4 4 4 4 4 55 222222222222 5555555 222 55555555555555555555 1 1 11 33 55555555555555555555555555 222 6666666 55555 22 4 2 111 88888888888888888888888888888888888888888888888888888 555555555555 4 2 2 4 1 1 1 1 4 1 33 999999999999999999999999999999 1 2 3333333 555 99999999999999999999999 111 1 4 1 222222222222222222222222222222222 1 33333 4 4 1 555555555555 777777777777777777777 1 4 2222222 3333333333333333 4444 1 555 4 1 1 4 2 55555 11 2222 1 44444444444 2222 33333 22 11 11 1
lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 8888888888888 66 44 6666 22 3 555 3 7777777 555555555555555555555555555 44 77 666 77777 3 666 44 6 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222 3 000 77 0 66 99 5 2 55 5 666666 6 3333 1 0 5 777 5 1 6 6666666 66 9 5 22 4 000 5 5 1111111111111111111111 4 6 3 4444 777 6 2 6 1 3 7777777 0 9 0 11111111111 11 1111 22222 0 0 66 7 3 77 5 0 5 88 5 5 111 33333 55 0 222222222222222222222222 5 5 0 777777 0 0 0 0 0 55 222222222222 9999999 333 1 0 6 77777777777777777777 0 5 6 0 33 4 55 22222222222222222222222222 0 777 6666666 55555 1 11 0 0 4 666 99999999999999999999999999999999999999999999999999999 666666666666 4 0 0 0 0 5 5 5 2 8 0 3 11 888888888888888888888888888888 5 2 55 1 1111111 0 7 333 3 77777777777777777777777 777 3 0 6 000000000000000000000000000000000 5 1 88888 0 7 0 3 8 111111111111 2 111111111111111111111 5 0 2 5555555 1111111111111111 2222 5 6 6 6 6 222 6 0 7 6 5 0 0 00000 1 88 1111 0 00000000000 8888 55555 77 0 6 66 4 99 5 2 6
lowQualScore : ..................................................................................................................................................... ............. .. .. .... .. . ... . ....... ........................... .. .. ... ..... . ... .. . ................................................................................................................................................................................................................................................................................................................................................... .... . ... .. . .. .. . . .. . ...... . .... . . . ... . . . ....... .. . . .. . ... . . ...................... . . . .... ... . . . . . ....... . . . ........... .. .... ..... . . .. . . .. . . . .. . . ... ..... .. . ........................ . . . ...... . . . . . .. ............ ....... ... . . . .................... . . . . .. . .. .......................... . ... ....... ..... . .. . . . ... ..................................................... ............ . . . . . . . . . . . . .. .............................. . . .. . ....... . . ... . ....................... ... . . . ................................. . . ..... . . . . . ............ . ..................... . . . ....... ................ .... . . . . . ... . . . . . . . ..... . .. .... . ........... .... ..... .. . . .. . .. . . .
lowQualScore : 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3333333333333 55 22 8888 55 1 444 3 8888888 555555555555555555555555555 66 99 444 33333 6 111 66 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7777 3 888 77 4 44 00 7 9 00 7 444444 6 0000 4 0 7 444 0 6 6 2222222 99 0 0 00 3 000 7 7 1111111111111111111111 0 7 3 4444 777 7 2 7 2 2 5555555 0 2 2 22222222222 00 2222 55555 0 8 00 3 0 55 0 0 5 00 0 0 000 00000 00 0 000000000000000000000000 0 0 0 000000 0 0 0 0 0 00 000000000000 3333333 333 0 7 7 00000000000000000000 7 0 7 0 22 0 33 77777777777777777777777777 7 777 5555555 00000 2 00 0 0 0 555 55555555555555555555555555555555555555555555555555555 000000000000 0 0 0 0 0 0 5 0 3 3 0 3 77 333333333333333333333333333333 0 5 88 5 8888888 2 0 777 7 77777777777777777777777 777 3 0 3 333333333333333333333333333333333 0 0 22222 0 3 0 3 3 333333333333 5 000000000000000000000 0 0 5 0000000 0000000000000000 5555 0 0 0 0 0 000 0 0 0 0 0 0 0 00000 0 33 2222 0 77777777777 3333 00000 33 7 7 77 0 55 5 5 0
consensus : NNNTTCAAAT-TG-TACAT---ATGTCAAATGTCGAATTCGGTGA-AA-AATAT-ATGG--C--TCCGAT---CA------GCCACGTACCT-CANNAATCACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTTCGGCG--GT--T----A-GTGAT--A----G--A--G-TT--ATGA---TATTGA-AA-TGAT---TGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTC--T--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C---TA---CA-AATTATCT-ATG-CA-GTTTC----ATTA-TT-T-CA---------C-A-TNGAGGATGT--GAG-CATATCCTCC----CAAA---TTTN-GTTGCG----T--NTATNACNCGACACGGTATTAGANCANAAGAAGATGACCCTGTTNTCCCTCTGCACTGCAGGATGTGCCAGTATTTCAAAAGCTTTTGC-TTTATATTTTCGAA--T--CCCGG--GGTTGTATTNTGATGA-CAAACA--CGAGGGG--TA-ACCCTG--TTTTTGTTATTTGTTTT-TAC----A-TTCGCATCTGA---TAACAGAAG--TGGCTCGA-TCGTA-GTTATCNAG-TACCAC-TTGTAT-G-TTTTGATTGATTTCATAATCACT-AT------AGCCCCTCTTTCGAAGGTTGG-TTT-GAAAT-CG-TTAAGAATTTCTTGAAAT------ACGTC--TGCATC-GCTTTGTNT---TT-CT-C-AN-ATG----TTGT-------ATGGCTTCNCCTTTGATAAAT-CCCT-T-AAAACTG-A-GG-ATTAT-GCGCACTTTTTC--A-TCC-AAATATTGGAAAG-GTA-T-GGTAGGTTT----GATGTACG-TTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAANCCTAACTTCCCTTGTACACCTGTGGTGTCTAAAAANTGCATTTCATTCACCGAAATTTCAGTATTGTGAATTTAANNAATTGATGAGCAGAATT-CGTT-A-AGTGAATA--C-CGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAAATTGGTTTATAATT-CCTCGGTTATC-TGATGTAGTC-TGATATCACA-TACAGATGGGGAGCATTTCG--ACCC-----ATAGCACA-TCCAA-TGATCT---GTTCGTAAATTTTTGAATTCAA-TT-AAAANT---------ATTATTTTCCAAAATTAATCTNA-G-AGANAGCTCAGAT-CTTTAATT-GATGGT----GT-TTAATTGCA-TAGACGGATTTGT-CCGATTTACTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTTTGTGTAGAGNGATGTNACACCATAG-CTGACCAGTC-AAGCNTTC-GCTGTTGGGTCTCAAGTACAATCAAACCCTCGATT-TTNGTGATAA-AATCNGAGCTATC-CCTGATGGAAAGTGCTTAATTTTTGCACTATAGGTGTCAGAAAAATAATCAGCATA-CTGACTGATCT-TTT-CCGTA-GGCGT--GCCTATC-GAGAA-TGG-G--TCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTNATGAAAAAAACGTCTAGGTC-AATT--GGGCAGAAGATAT-A-TCTGCCT-AGCC-TCGTATTATGGTGCT-T---T-GT-GTAA--GA-ATNATA--TGT-G-TATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGTCTT-GT-AATT-GGACAGNTGAGAATAGTACATGTATTCCAANGNANTTTAGCTGT-CNTTCTCCTTCNTTAATGTAATCATATTTGGCTGATTTTCGCATGATAACGCACAGTCATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTG-TGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGGTAATTCTGTACATCATCCGACAATTTATCT--GACGTGAGATTAAACACA----TGTTCTC-TACATACAAGG-AC------TTTAGCA----CTGTGTTTTCGTGCT-GGCGAGCT-TTTTGTTTAATGTTCCGCGTTTTNNACGCAANGATNTAGCGTCCCNATCGAAACGCCTGGCCATT
Reference ( gi|1 ) : AACTTCAAATCTGATACATTGCACATTAAATG--GAATTTAGTGA-AA-AATATTATGG--C--CC--ATG--CA------GCCACGCAC-T-CACAAACCACTT----GACTC---T-ACAGCTAAGTTTAAAAGTGTTTCGGCG-TGT-AT-CAGACGTGAT--A----G--A--G-TT--ATGA---TATTGG-AA-TGAT---TGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTC--T--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTGAC---TA---CA-AATTATCT-ATG-CACGTTTT----ATTA-TT---CA---------T-A-TAGAGGAAG---GAGACA-ATCCTCC----CAAA---TTTG-GTTGCG----T--ATATT-CA-GA-A-GATAT--GATTACA-GAAG----C---ATTTTATTTT----C-----AAT-TGC-AACATT--AAAA--TTATGCGTTTATGTTTTCGAA--T--CTCGC--GGTTGTATTATG-TGA-CAAA-A--CGAAAGG--TA-ACC-----TTTTTG--ACTT-CTTTATAC----AGTCAAGATCTAC---TAGCAGAAG--TGGCTCGA-TC-TA-GTTATTCAA-TACCA--TTGTAA-G-TTT-GATTG--TTCATAATCACT-AT------AGCCTCTCTTTCGAAAGTTGG-TTT-GAAAT-CG-TTAAGAATTTCTTGAAA-------ACGTC--TGAATT-GCTTTGTGT---TT-CT-CAAA-ATG----TCAT-------ATGGTTTCTCCTTTGA-AAAT-CCCT-T-AAAACTG-A-GG-ATTGT-GTGCACTTTTTC--A-TCC-AAATATTGGAAAG-GTA-T-GGTAGGTTT----GATGTAC--TTTTGAA-ATCTAGGATATCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAAAGTGCATTTCATTCAC--GAATTTCA-TATTGTGAATTTAAGCAATTG-TGAGCAGAAAT-CGCT-ATAGTGAAAATAC-CATGAATTTCTTTTTCTTCACCATTGAATATAATGAA-CCATCATCACGATAACGCCGCACG-TACGTTATGCGATGTT-ACTTGGAAATTGGTTTATAATTTCCTCGGTTATCCTGATGTAGTCCTGATATCACAATACAGATGG--AGCATTTCAGAACCCCATTAATAGCACAATC--A-TGATCT---GTTTATAAACTTTTGAATTCAAATTCAAAAAT---------ATTGTTTTCCAAAAGTAATCTGA-G-AGATAGCTCAGATGCTTTAATTTGATGGTATTTGTTTTAAG-GCAGTAGACGGATTT-T-CCGATTTACTGTAGTTATTTATTTGTACTGC-----GTAATTAATTCCCAAAACTGCGATGTTT-GTGTAGAGTGATTTGACATCATAGTCTGACCAATTAAAACATTCCGC-GTTAG-TCTCAAGC---------TTCTCGATTATGGGTGATAAGAATCAGAGCTATCGCCTGAT-GAA-GTGCT-AATTTTTGCACTATATGTGTCAGAAAAATAAGCAACTTAGCTGACTGATCT-TT--CCGTGTGGCGTC-GCCTATCTGAGAAATGATG--TCGCCCCGCCGGAAAATACTGCCGAAACGCAGCAACAATTAC--TTGATTTCATGAGAAAAACGTCTAGGTCCAATT--GGGCAGAAGATAT-A-TCTGCCT-AGCCATCGTTTTATGGTGCT-T---T-GT-GTAAAGAAGATAATA-CTGT-G-TATCATCCAACACACCCTGCCATTTTCAT-TTTGAGAGTTTTTCTTG-ATTAATTTT-ACAAGATTTTGTGACTTGGTAAATTGGGACAGCTGAGAATA-TA-ATGTATT----GGGAA-TTAGCGGTACGTTCTCCTTCTT-AATATAATCA-ATTTGGCTAA-----GCATAATAACGCA----CATGTTGTTTTTATCGGCGTTCTTGATTATGATATCTTTGCATTTTCTTGGATCTATCAAAGACTGCCGTTCAGAATTACTTAAATTGTCGTGAATTTTTAACGTTTGCATAGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAA-TCCGCTATTTGTACGGGATGGATGAATCTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTC-TACATACAATA-AC------TTTAGCA----CTGTGTTTTCGTGCTAGCCGAGCGTTTTTGTTTAATGCTCTGCGTTTTCTACGCAAAGATTTAGCGTTCCGATCGAAACGCCTAGCCATTG
gi|8 : TTCAAAT-TG-TACAT---ATGTCA---G--GAGTTCG-----AA-AATAT-ATGG--CTCCC--AC---CA------GCCATGTACCT-CAACAATCACTT----GATTC---T-ACA-CTAA--TTAA--GTGTATTAGCG--GT---------GTGAT--A----T--A--A-TT--ACGAGGTTATGGGTCA-TGA-----GA-TTTGA----TTTCTCA-ATA----GA-CTG-AT-T-TTTTTCTC--TCCGCATGCAAA---T-CT--GCCTCA-TCA-G-G--GTTTTA-T
gi|11 : ttttgttgtttttttttttagaaatcagctacacatcagctgttggaggctgccaatttgcaagaaaaagttatggctcttttttgtatttcccacaatgtcatctggtgatgacgcatcagaggcaactgcctctcagcggtgagcattaattattagctgcagcttcaactgaaaataccagtgatttgggatggattgatataaatgacagagaaaaataaaacttgatgcacttgtggacattgtgacattttAAATGTCGAAT---GTAAGAA-AATAT-ATGG--C--TCCGAT---CA------GCCACGTACCT-CACAA-TCACTT----GACTC---ag
gi|19 : acccagtaacgttttagacaatgcgtccaagattgttaacggACTTAGTAAGAA-AATAT-ATGC--T--TC--GTT--CA------GCCACGTAC-TTCAACAATCACTT----GATTG---T-ACA-------TTAG--GTGTTTTGGTG--GT---------GTGAT--AC---G--A--GGTT--GTGA---TATTGA-AC-TGAT---TCA-TTTGAGTTGTC----A-AT-----CA-----AT-TGTTTTTTTC--T--GCATGCAAA---T-AC--GCCTCA-TCA-G-A--AGTCTATTT--GCAgttgagaaaatatagggcttcgatcagccacgtacatcacaatcacttgactctacactaattaactctttcggcggtgtgatgcaaggttatgatattgaaatgattgatttgattaatcaatcgattgatgttgtttttctgcatgcaaatccgcccaatcaggagtctatttgaggtctacaattatcatgcaatttcattattttacaattgaggatgtgagcatatctcccaaatttt
gi|16 : cattaacccccatccccacaatcacgcattttaacgcataatctgtttcctcacaatcacgcAGAGA-AA-AAAA----GG--C--TCCGAT---CA------GCCACGTACCT-CACAATTCACTT----GACTC---T-ACA-CTAA--TTA---GTGTTTCG-CG--GT-GT-GATACGTGAT----------------T--ATGA---TATTGA-AA-TGAT---TGA-TT-GA----TT----A-ATT----GA-T----T-T-TGTTTTTC--T--GCATGCAAA---T--C--GCCTCA-TCA-G-G--AGTCTATTT--GCAGT--C---TA---C--AATTAT-T-ATG-CA-GTTTT----ATTATTT---CA---------CAA-TTGAGGATGT--GAG-CA-AATCTCC----CAAAT--TTTG-GTTGCG----T--TTATctttac
gi|3 : cctgaacagtttcaaaccggctaaagtcttagtagagtgaaTGA-AG-AATAT-ATGG--C--TCCGATT--CA------GCCACGTAC-C-TACAA-TCACTT----GACCC---G-A--GCTAA--TTAA--GTGTTTCGGTG--GT---------GTGAT--AT---G--A--G-TT--ATGA---TTTTGA-AAATGAT---TGAATTTGA----TT----C-ATT----GA-T------T-TGTTTTTC--T--GCATGCAAA---TTCC--GCCTCA-TCA-G-G--AGTCTA-TTTGGCAGT--C---TA---CA-A-TTAT-T-ATGGCA-GTTTT----ATTA-TTGTTCA---------C-AGTGGAGGAAGT--GAG-CATATC-TCC----CAAT---TTTC-GTTGAG----T---TAAT-CT-GACACGATATTAGAT-ACAAGAAG----TCCTATTTTTCTTT----CTGCAGGATGTGCCAATATTTCAAAG--CTTTAATTTTAT--TTTCGAAATT--CCCAG--GGTTGTATT-TG-TGA-CAAA-AAACGAAGGG--TATACCCTGTTTTTTTG---CTT-TTT----------GTTAACATC-ACAGATAACAGA-G--TGGCTCGA-TC-TAAGTTAT-CAG-TACAC--TTGTAATG-TTT-GATTGATTTC-TAATCACTTAT------AGCCCCTCTTTCGAAGGTTGGTTTT-GAAATGCGATTAAGAAATTTCTGAAAT------ACGTC--TGCATT-GC-TTGTGTTTCTT-CT-C-AT-ATG----TTGT-------ATGGTTCCTCCTTTGATAAAT-CCCT-TAAAAACTG-AGGG-ATTGTAATGCACTTTTTTCGA-TCCAAAATA-TGGAAA--GTATT-GGTAGGTTT----GATGTAC---GTTGAA-ATC-AGGAT-TCG-TTTGCTTCAAAGTCTAACTTCCCTTGTACACCTGTGGTGTCT-AAAATTG-ATTTCATTCACCGAAATTTCAGTA-TGTGAATTTAACAAATTGATGAGCAGAATTCCGCTAAAAGTGAATAT-T-CGTGGATTTCTTTTTCTTCA-CATGGAATATAATGAA-atgacacgataggtagaacaaa
gi|11 : TGAGAA-AATAT-AGGG--CTTCG--AT---CA------GCCACGTACAT-CACAA-TCACTT----GACTC---T-ACA-CTAA--TTAAC--TCTTTCGGCG--GT---------GTGATGCA----A--G--G-TT--ATGA---TATTGA-AA-TGAT---TGA-TTTGA----TT----A-ATCAATCGA-TTG-ATGT-TGTTTTTC--T--GCATGCAAA---T-CC--GCCCAA-TCA-G-G--AGTCTA-TT--TGAG-GTC---TA---C--AATTATC--ATG-CA-ATTTC----ATTA-TTTTACA-----------A-TTGAGGATGT--GAG-CATAT-CTCC----CAAA---TTTg
gi|6 : acccagtaacgttttagacaatgcgtccaagattgttaacggaaatgtcgaatgtaagaaaatatatggctccgatcagccacgtacctcacaatcacttgactcgtTGA-AA-AATAT-ATGGTTC--CC--AC---CA------GCCATGTACCT-CAACAATCACTTAATTGACTGATGT-ACA-CTAA-TTTA---GTGTTTCAGCG--GT---------GTGAT--AT---G--AG-G-TT--ATGA---------------------------GA----TT----A--------GACT---AT-T-T-TTTCTCTAT--GCATGCAAA---T-CT--GCCTCA-TCG-G-G--TGTCTA-CT-------------TA---CA-ATTTATAT-TTG------TTC----ATTA-TT---Ct
gi|10 : taaggtgaatgtaaggtcaaatatgataattgcgtgtttcaaatacttaattgttagcaattaatgcaactagttatgtccatctaattgttatcagttatgtagaaattcagttattaaatataactacacatcagctgctggagactgccattttgcaagaaaaaagtttctttgatatttcccacaataccatctggtgatgacgcatgggggggggggcatttggctctgtgtgacgagctttaattactagctgaagcttcaactggaaataccagtgatttacgattgattgaaaatgactgagggaatgataaaacttcatgcacttgtgacatttttgtcaaattgtatatgttgtcaggagtGA-AC-AATTATATGG--C--TC-------CAATCTTTGCCATGTAC-TACACAA-TTACTT----GACTC---TGACA-CTA---TTAA--GTGTTTC--CG--G-----CAGTCGTGAT--ATTGAG--G--G-TT--ATG----TATCTG-AA-TGATCATTAA-TTTG--------------------GA-T----------TTTTTC--T--GCAAGCGAAATTT-CT--ACCTCA-TCAGG-G--ATTCTA-TT------TGAC---TAT--TACAATTATCttga
gi|7 : A-AATAATAT-ATGG--C--TC---TGATCA------GTGACATAC-TTCAATAATCACTC----AACTC---T-A-AACTA---CTGAA-GTGTGTTGGCGATGTGATACA-AGGTGGT--A----G--A--G-------------ATTA--AG-TAAT---TGA-TT--A----CT----ATATA----GA-A---AT-T-T----TGC--T--GCATGCAAA---T-AT--GTCGTA-TCA---G--AGTCTC-TT------TGCCCTTTA---C--AATCATC--ATG-CAaggggcaatttcatattactttttacaatcaaggaattgaactatcccccatatgttctttaattttgctctttgatgtaggtaggaactgggggaaataatctgtctctctacaggatgtggccagtattttaaagcttcaggttatgtaatttgttgacaaaaacaaggggatatacagctgtgttattgttcttt
gi|5 : A-AT-AATAT-ATGG--C--TC---TGATCA------GTGACATAC-TTCAATAATCACTC----AACTC---T-A-AACTA---CTGAA-GTGTGTTGGCGATGTGATACA-AGGTGGT--A----G--A--G-------------ATTA--AG-TAAT---TGA-TT--A----CT----ATATA----GA-A---AT-T-T----TGC--T--GCATGCAAA---T-AT--GTCGTA-TCA---G--AGTCTC-TT------TGCCCTTTA---C--AATCATC--ATG-CAttaatgatgatttgagcttattcttaaaaattattgcattttgataggagatccgaaaaaaattgtctttctctctggaggatgtgcctgtattttaaaagcttttgttttatattttgattccagggtgtatatgataacaaacacaagaggtatttcctgttatttgcttttatttgcatctaaaaagcttggctcaactgtaattatcaagtgctacttgtatgttttgattgattttattatcttcaaaatcttttttttttttaaatcttgaagttagtacatctccatcgtttgcttttctctaatatggcacttatttctctcatggcttcacttttaataattcccacaaaactgaaggattat
gi|4 : -AA-AATAT-ATGA--C--TCCGAT---CA------GCCATGTACCT-CATAA-TCACTT-------------------------TAA--GTGTTTTGGCG--GT-TT---GATATGA-----------G--G-TT--ATGA---TATTGA-AA-TCAT---TGA-TTTCA----TT----A-ATCAATGGA-TTGGCT-T-TGTTTTTC--T--GCattaatgatgatttgagcttattcttaaaaaaattattgcattttgataggaagatccgaaaaaaattgtcttttctctctggaggatgtgcctgtattttaaaagcttttgttttatattttgaattccaggggtgtatatgataacaaacacaagaggtatttcctgttatttgcttttatttgcatctgataaaagcttggctcaactgtaattatcaagtgctacttgtatgttttgattgattttattatcttcaaaatcttttttttttttaaatcttgaagttagtacatctccatcgtttgcttttctctaatatggcacttatttctctcatggcttcacttttaataattcccacaaaactgaaggattata
gi|18 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaag-AA-AAT-CTATGG--C--TCCGAT---CA------GCCACGTACCT-CAACAATAACTT----TATTC---T-GCA------CTTAA--GTGTTTCGGC--TG--AT-------TGAT--A----C--AAGG-TT--ATGG---TATTGA-AT-TGAT---TGA-TTT-A----TC----A-ATC----GA-TTGGAT-T-TTTTTTTC--T--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TTG-GCACT--T---TA---C--AATT-TTT-ATG-CA-GTTTC----ATTA-TTTTACA-----------A-TCGAAGATG---TAAGCATATCCCCTAGGATAAAATTTTTT-GTTGCG----T--TTATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgctttagttttcaattaccagctgggttgtattttgcgaccaaaacgaggggtacaccctgttttttttttttttgcttttattaacatcagataacagagtgggtcgatcgtagttatcaataccacttctatgttttgattgatttcataatcactatagcccctctttcgaaggttggttttgaaatcgataataatttcttgaaatacgtctgcattgcttgtgtttttcatatgtcgtatggcttcttctttgataaatacaa
gi|20 : ag-AA-GATAT-ATGA--CT-CC--AGT--TA------GCCACATACCT-CAACAATCACTT----TACTC---T-ACA-CTAA--TTAA--GTGTTTCGGCG--GT---------GTGAT--AT---G--A--GGTT--ATGC---TATTGA-AA-TGAT---TGatgacacaataggtagaatag
gi|9 : atgtcatatttttcatgtattgtccacatgccatattgcgggattgctTTCAGCG-AGT-GT---GAC-TAAT--C----GCGA--G-TTTCATAA---TGT-GA-GA-TGAT---TGG-TTTGA----TT----A-TT-----GA-T---TT-T-GGTTTTTC--TG-GCATGC-AA---T-CCCAGCATCATTCA-GTGACAGTCTA-TT--GC-GT--C---TAAACCA-AATTACTTAATG-CCCAGTTTGCTAATTA-TT---CACAAAATTTTT-G-TAGAGGATGTGTGAGCCA-ATACTTC----TTAA---TTTG-GTTGCGGGTTT--ATATgcagtgcttaaatcggcgattgatttctt
gi|15 : -G--AGTCGA-TTT-GCACTG-----TA---CA-A-TTATC--ATG-CA-GTTTC----ATTA-TT----------------------GCGAG---CAGA----TCC-CC----CAAA---TTTTTGTTGCG----TTTATATGACACGATA-GGTA---GAACAAA-GAAAATGAC---GTTGTCTCTCTGCAC-----GATGTACCAGTATTTCAAAAGCTCTTGC-TTTAT-TTTTCGAA--T--TCCAG--GGTTGTATTTTG-TGA-CAAA-AC-CGAGGGGCATA-CCC-----TGTTT-----TT-TGTTA-AC----A--CCAGA--------TAAC---AG--TGGCTCGA-TCATATACTACTCAATTACTAGGTTATAT-G-TGT-Ggaacagatcggtcagaacagagaaaagtctctttttcctgttcttttctgcggatgtgccaatagttttttcagccttttttttgctttaaatgtttttcgaattccagggttgtaattgtgtgtgaacaaaaaacaaactgagcggtatacctcttgttttttgcttttgagctcactaac
gi|7 : TT--AAAAGCTTTTGT-TTTATATTTT-GAT--T--CCAG---GGT-GTAT-ATGATAA-CAAACA--CAAGAGG--TA---T-----TTCCTGTTATTTGCTTT-TA-------TTTGCATCTA--------AAAAGCTTGGCTCAACTG-TA-ATTATCAAG-TGCTAC-TTGTAT-G-TTTTGATTGATTTTATTATCTTC-AA------AATCTTTTTTTT----------TTT-TAAAT-C--TT--GAAGTT----AGT-------ACATC--TCCATC-G-TTTGCTT---TT-CT-CTAATATGGCACTTATTTCTCTCATGGCTTCACTTTTAA-TAATTCCCA-C-AAAACTGAA-GG-ATTAT-taatttaccagatcatagatctttttctgtttgaa
gi|5 : aaataatatatggctctgatcagtgacatacttcaataatcactcaactctaaactactgaagtgtgttggcgatgtgatacaaggtggtagagattaagtaattgattactatatagaaattttgctgcatgcaaatatgtcgtatcagagtctctttgccctttacaatcatcatgcattaatgatgatttgagcttattcttaaaaattattgcattttgataggagatccgaaaaaaattgtctttctctctggaggatgtgcctgtattTT--AAAAGCTTTTGT-TTTATATTTT-GAA--T--TCCAG--GGGTGTAT-ATGATAA-CAAACA--CAAGAGG--TA---T-----TTCCTGTTATTTGCTTT-TA-------TTTGCATCTGA---TAA---AAGCTTGGCTCAACTG-TA-ATTATCAAG-TGCTAC-TTGTAT-G-TTTTGATTGATTTTATTATCTTC-AA------AATCTTTTTTTT----------TTT-TAAAT-C--TT--GAAGTT----AGT-------ACATC--TCCATC-G-TTTGCTT---TT-CT-CTAATATGGCACTTATTTCTCTCATGGCTTCACTTTTAA-TAATTCCCA-C-AAAACTGAA-GG-ATTAT-
gi|4 : aataatatatggctctgatcagtgacatacttcaataatcactcaactctaaactactgaagtgtgttggcgatgtgatacaaggtggtagagattaagtaattgattactatatagaaattttgctgcatgcaaatatgtcgtatcagagtctctttgccctttacaatcatcatgcaattaatgatgatttgagcttattcttaaaaaaattattgcattttgataggaagatccgaaaaaaattgtcttttctctctggaggatgtgcctgtatt--TTTTGC-TTTA-GTTTTC-AA--TTACCAGCTGGGTTGTATTTTG-CGACCAAA-A--CGAGGGG--TACACCCTG--TTTTT----TTT-TTTTTTGCTTTTA-TTAACATCAGA---TAACAG-AG--TGGGTCGA-TCGTA-GTTA-TCAA-TACCAC-TTCTAT-GTTTT-GATTGATTTCATAATCACT-AT------AGCCCCTCTTTCGAAGGTTGGTTTT-GAAAT-CG-ATAATAATTTCTTGAAAT------ACGTC--TGCATT-GC-TTGTGT---TT-TT-C-AT-ATG----TCGT-------ATGGCTTCTTCTTTGATAAAT-a
gi|24 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaagaaaatatatgactccgatcagccatgtacctcataatcactttaagtgttttggcggtttgatatgaggttatgatattgaaatcattgatttcattaatcaatggattggctttgtttttctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnt---TAACAGA-G--TAACTCGA-TCGTA-GTTATCAAG-TACCAC-TTGTAT-G-TTTTGATTGATTTCATAATCACT-ATTAGTATAGCCCCTCTTTCGAGGGTTGG-TTTTGAAAT-CG-CTAAGAATTTCTTGAAAT------ACGTC--TGCATT-GCTacaa
gi|35 : aCCAC-TTGTAT-G-TTTTGATTGATTTCATAACCACT-AT------AGGCCCTCTTTCAAAGGTTGG-TTT-
gi|2 : ATCACT-AT------AGCC-CTCTTTCGAAGGTTGG-TTTTGAAAT-CG-TTAAGAATTTCTTGAAAT------ACGTC--TGCATT-GCTT-GTGT---TTTCT-CATA--TG----TCGT-------ATGGTTTCTCCTTTGATAAAT-CCCTAT-AAAACTG-A-GGGACTGT-GTGCACTTTTTCG-A-TCC-AAATATTGGAAAG--TA-TTGGTAGGTTT----GATGTACG-TTTTGAA-ATCTAGGAT-TCGATTTGCTTCAAATCT--ACTTCC-TTGTACA-TTGTAGTGTCTAAAA-GTGCATTT-ATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CTTT-----TCAAA--------GAATTTCTTTCTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAAATTGGTTTATAATT-CCTCGGTTATC-TGATGTAGTC-TGATATCACA-TACAGATGGGGAGCATTTCG--ACCC-----ATAGCACA-TCCAA-TGATCT---GTTCATAAACTTTTGAATT-AAATTCAAAAATTCAAAAAATATTGTTTTCCAATATTAATCTGA-GGAGATAGCTCAGAT-CTTTAATT-GATGGT----GTATTAATTGCA-TAGACAGATTTGT-CCGATTTACTGTAGT-AT--GTTTGTACTGCAGTACGTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTAACA-----------CCAAT--AAACATTC-GCTGTTAGGTCTCAAG----------TTCTCGATT-TTGGTG-TAA-AATCAAAGCTATC-CCTGAT-GAAAGTGCTTAATTTTTGCACTATAGGTGTCAGAAAA-TAATCA-CATA-CTGACTGATCT-TTT-CCGTG-GGCGT--GCCTG----------G--G--TCGCCC-GCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTTGATTTCATGA--AAAACGTCTAGGTC-AATTTTGGGCAGAAGATAT-AACCTGCCT-AGCC-TCGTATTATGGTGCT-T---TTGTTGTAA-GAA-ATAATA--TGT-GGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGACT-GGTAA-TTAG-ACAGCTGAGAATA------GTATTCCAAGGCAT-TTAGCTGT-CGTTCTTCTTCTTTAATATAATCATATTTG-C--------GCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTG-TGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTC-TACATGCAAGA-AC------TTTAGCA----CTGTGTTTTCGTGCTAGGTGAGCTTTTTTGTTTAATGCTCTGCGTTTTATACGCAATGA-TTAGCG-TCCGATCGAAACGCCTGGCCATT
gi|22 : T-GAATT-C---TAAGAATTTCTTGAAATTAGTACATGTCCATCATTTGGGTTTTTTT---TT-CT-C-AT-ATG----GTAT-------ATGGTTTTATTTTCAATAAAT-CCCT-T-AAAATTG-ATGG-ATTAT-GCGT------------TCC-AAATAGTGTAA----TG-T------GTTTGCAAGATGGA-----TTAAATATCCAGGATG-CGAGCTGCCTCAAA
gi|23 : GAAA-------ACGTC--TGAA----ATTTGTCT---CT-CTGCAAG-ATG----T
gi|28 : gcagtttcattatattaattacaatcaatttgttgcagttatatgacatgataggtagaacagaG-A-GG-ATTTT-GAGCACTTTAGC--AATCC-AAATATTGAAATGAGT--T-GTTGAGTTT----AATGTATAGTTTTAAA-GTCCAgcaagtatattaaaagcttttgtttcatttttcaaattccagtgtcattattaatgaca
gi|39 : acagaattgcaAATTGATGAGCAGAATT-CGTG-ATAGTGAATA-ACTCATGAATTTCTTTTTCTtaaagttaacggtgtaaaatatatttcctt
gi|13 : ATAGCACATCC--AGTGATCT---GTATGTAAATTTTTAAATTCAA-TTGAAATGT---------ATTATATTCCAAAGTTAATCTCA-G--GAAAAATCATATA--TTAA---------AT-----------GCA-TACATATATCTGT-CCGATTTACTATAGT-AT--ATTTCTACTGCA----GTAAATGATTCTTCAAATTGT-ATGTTTTGTGTAAAAAGATGTTACACCATAG-CTGA-CAGTC---GCTTT------TTGG-TCTCAAGTACAATCAAACCCTCGATT-TTTGTAATAA-AATCTGAGCTATC-TCTAATGGAA-GT
gi|21 : tactcgtaagtatttttgtacaatatccttgtcctctgatgcagtcggttatcgtttagactccGCACA-TCCAA-TAATCTACAGTTCATAAATTTCTGAATTCA------AAATT---------GTTATTTCCCAAAATTAATCTTAGG-AGAAAGCT
gi|31 : -G-AGATAGCTCAGAT-CTTTAATT-GATGGT----GTTTTAATTGCA-TAGACGGATTT-TTCCGATTTACTGTAG-TATT--TTTGTACTGCA----GTAATTAATTCCtgaccgtcatgttagcgaatggtgtgttagaactgttaattgaatggacagatagtatgctattctaacgctgtatttatttgcatgagtccaaaatcaaat
gi|40 : -CCGAATTACTGTAG-TA--TGTTTGTACTGCT----ATAACTAATTCTTCAAACTG
gi|12 : ATAATCAGCATA-CTGACTGGTCTCTT--CCGTA-GGCGT--G--TATCTGAAAAATGG-G--TCGCCC---CGG-------TG----------GTAGAAATTAGG-TCAATTTTATGAAA------------TC----T--GAGCAGAGGATCA-A-TCTGCTT-AGCC-TCGTATTATGGTGCT-T---T-----TAAA-----TGGTA--TGTAG-TATCATCAAGCACACT-----ATTTTCACATTTGAGAATTTTTCTTGTCTTAATTTTCACAAGATTGTGTGTCTT-GT-AATT-AGACAAATGAGAATAGTACATGTATT----TGGAATTTAACTGT-CTTTCTC---CGT-AATGTAATCA------GCTGATTTTCGCATGATAACACACAGTCATATTGTTTTTATCGACTTT
gi|29 : gatcACTTA-CTGGCTGATTT-TTTTCCGTA-GGC--CAGCTTATCGGAGAATTTATACATCACCCCGATG-AAAATACGGGAGTATTGTAGCAACCACTGTGTTTGATTTAATGAAAataaattccga
gi|42 : CCGCCGGAAA-TACTGCCGAACTGCAGCAAC
gi|32 : TT--GGGAAGAAGATATAA-TCTGCCCGAGCC-TCATGCAATGTTGCTATAGAT-GT-GTA---GACATTATATCTA--A-TATTATCAAACAAACCCT
gi|36 : aagtTCATATCTAAGAGTTTT-CTTGCATTAATTTT-ACACAAATTTGTGTCTT-GT-GATT-GGACAGcta
gi|26 : CCTTTAGTTAGTAAAAGGTAATTCTGTACATGATTGTACAATGTATATACGACGTGAGATTAAACACAACTGTGTTTTCGTAC
gi|25 : TCACCCGACAATTGATCT--GATTTGAGATTAAGCACA----TGTTCCC-TATATACAATGTACAATCAATTTAGCA----CAGTGTTTTCGTG---G-CGAGCTGTTTTGTGTAATGTTCTGCGTTTTGCAAGCAAtttgcaagctttgttttgttagtttgttttttgtt
gi|27 : TTAAATACG----TACTCTC-TGTATACAAGG-AC------GTCAGCAATATTTATGTTTTTGTACTTTACAAGCA-TTTTGTTTAATGTTCCAC-TTTTTAACACAAAGATATAACATCCCCATCAAA
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): ATTGTTATCATTTTTATGGAAATCAGCTATCAAATATAGCTACACATCAGTTGCTGGAGTCTGCCATATTGCAAGATAAAGTTATCGCTCTTTTTGATATTTCCCACAATATCATCTGGTGATGACGTATACAGGGCAATTATCTCTGAGTGATGCATGATGAGCTTTAATTATTAGCTCCAGCGTCAACCAGTGATTTGGGATGGATTGATGAAAATAGGGAAAATGATGAATCTTTATGCACTTAAGGACAAAGTGACTTTCTTTCAAAGTTTGCATGTTGTTGTCATAATATAAATTTCGGGAAATATAGC
Unaligned ( gi|17 ): GAATATCACATTTGATTTAAAGGGAGCGCAAGGTCAAAAATGATAATTGGTCAATTCAAATACTGCGTTGGTAGCAATTAATTCCACTGGTTATTTTCATCTGATTGTTATCAGTTGTGTAGAAATCAGCTATTAAATACCGCTACACATCAGCTGCTGGAGGCTGCCATTTTGAAAGATGAGAGTTATCGCTCTTTTTGATATTTCCCACAATCCAATCTGTTGATGATGTACAAGAGTCAATTGCCTCTGAGTGAAAGCAGCTGATCATGTCTGACTGCAA
Unaligned ( gi|30 ): GTTGTCTCCTTGGCGATGTGCCAGTATTAATCATTTTACTTTTGCTAGAATTCAAGAATTGTATATGGTGACGAAAGCAAAGAGTATATCCATTTT
Unaligned ( gi|33 ): ATATGGCTACACATCAGCTGCTGGAGGCTGCCATTTTGCAAGATAAAGTTATCTCTCTTTTTGATATTTCCCATGATACCA
Unaligned ( gi|34 ): TAAACCCATCTGCTGATGATATACAAGGGGCAACTGCTTTCGAGTGAAAGCAGCTGGTCACGCCTGATGGCACCGCAAAG
Unaligned ( gi|37 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Unaligned ( gi|38 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Unaligned ( gi|41 ): TCTTTGCAGCATGTGCCGGTATCTTAAAAACTTTTACTTTATTTTTCGA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 111 33333333333 2222222 11 55555555 3333333333333333 4444444444444444444444 11 55555555555555 1 2222 1111 44444444444444444444444 111 11 3333333333333333333333333333333333333333333333333333333333333333333333333333 11111111 22222 222222222222 111 11111 44444444 1111 33333333 1111 111111 1 11 1111 11111 1 22 444444444444444 1 1 11 2222 22222222 1111 111 1 33 11 2 11 1 4444444444444444444 2 1 1 11 111 1 1 333333333333 11 1 33333 1 111 666666666666666 11 22222222 4444444444 1111 111 111111 1111 1 88888888888888888888888 2 88888888888 1 1 1 2 1 1 1 1 1 1 55555555555555555 2222 1 11 111 1 1 333333333333333333333 1 222 1 1 1 1 1 2 4444444444 1 22 666666666666666 2222 2 1 2 2 55555 11 1111 222222 2222 1111 222 1 1
lowQualScore : 0 0 2 777 11111111111 3333333 2 2 2 5 33 33 6666 555 3 3 888 44 2 2 2 11111111 2 3333333333333333 33 5 555 2 2 5555 3 0 6666 5555555555555555555555 3 3 9 11 555 55555 3 3 6666 6 11111111111111 666 8 1 2222 77 66 0000 44444444444444444444444 0 777 3 99 999999999 000 3 00 1111111111111111111111111111111111111111111111111111111111111111111111111111 4 8888 55 0 11111111 3 66666 3 55 4 77777 666 4 3 88 000000000000 444 11111 44444444 33 0000 44444444 999 55 7777 3 5 5 6 3 2 5 5 444444 5 0 4 0 8 5 33 3 0 4 0000 22222 5 1 6 5 11 1 333333333333333 1 6 6 1 5 1 1 22 0 11 2222 8 0 55555555 5 7777 666 0 8 6 0 3 11 00 6 88 0 7 88 6 6 6 3 44 22 3 0 2222222222222222222 6 7 0 5 5 88 777 6 3 3 222222222222 88 3 33333 0 2 777 2 222222222222222 11 1 8 88 1 0 88888888 8 0 3333333333 8 7777 8 8 8 6 111 888888 6 7777 3 7 7 1 1 11111111111111111111111 7 0 33333333333 3 1 7 3 1 3 3 5 2 7 2 0 3 0 0 0 22 3 77777777777777777 88 0 8 2 22 55 1 8888 3 7 33 111 0 0 1 666666666666666666666 1 0 444 2 0 0 3 3 7 0 4 0 0 0 1 6 3 8888888888 3 1 55 0 111111111111111 0 7777 0 5 4 3 0 3 11111 33 2 7777 0 1 999 333333 0 8888 0 0 8 0000 000 2 2 22 1 4 2 1
lowQualScore : . . . ... ........... ....... . . . . .. .. .... ... . . ... .. . . . ........ . ................ .. . ... . . .... . . .... ...................... . . . .. ... ..... . . .... . .............. ... . . .... .. .. .... ....................... . ... . .. ......... ... . .. ............................................................................ . .... .. . ........ . ..... . .. . ..... ... . . .. ............ ... ..... ........ .. .... ........ ... .. .... . . . . . . . . ...... . . . . . . .. . . . .... ..... . . . . .. . ............... . . . . . . . .. . .. .... . . ........ . .... ... . . . . . .. .. . .. . . .. . . . . .. .. . . ................... . . . . . .. ... . . . ............ .. . ..... . . ... . ............... .. . . .. . . ........ . . .......... . .... . . . . ... ...... . .... . . . . . ....................... . . ........... . . . . . . . . . . . . . . . . .. . ................. .. . . . .. .. . .... . . .. ... . . . ..................... . . ... . . . . . . . . . . . . . . .......... . . .. . ............... . .... . . . . . . ..... .. . .... . . ... ...... . .... . . . .... ... . . .. . . . .
lowQualScore : 0 0 5 555 00000000000 3333333 9 9 9 7 99 11 1111 000 1 1 222 22 9 9 9 55555555 9 3333333333333333 99 7 000 9 9 2222 1 4 5555 8888888888888888888888 1 1 2 55 888 00000 3 3 2222 2 44444444444444 444 8 2 5555 99 44 7777 99999999999999999999999 5 555 6 22 555555555 000 6 33 8888888888888888888888888888888888888888888888888888888888888888888888888888 0 5555 55 5 44444444 6 77777 6 55 6 33333 333 0 4 99 444444444444 777 11111 66666666 22 6666 22222222 000 66 7777 0 7 7 6 0 2 0 0 444444 0 2 5 0 9 0 88 2 2 5 6666 55555 6 4 6 7 44 0 444444444444444 0 7 7 4 7 4 1 66 8 66 8888 0 8 88888888 0 0000 222 8 0 4 0 2 77 77 7 77 7 3 33 7 7 7 3 77 00 2 0 2222222222222222222 7 3 0 0 5 33 777 7 3 3 333333333333 33 3 33333 0 5 555 0 222222222222222 00 0 0 88 0 8 88888888 0 6 0000000000 0 0000 0 0 2 7 777 555555 0 0000 3 3 3 0 0 00000000000000000000000 3 3 33333333333 3 0 3 3 0 3 3 5 5 3 0 0 2 0 0 0 88 2 88888888888888888 88 6 2 5 88 22 0 7777 3 3 88 000 0 0 2 222222222222222222222 0 0 000 5 0 2 2 2 0 0 0 0 0 0 0 7 3 3333333333 3 0 33 7 000000000000000 7 7777 0 5 0 0 0 7 00000 88 0 0000 8 4 444 000000 8 0000 8 8 0 6666 222 0 5 00 0 0 0 0
consensus : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAATCACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGC-G-GT--------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-A-T-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCAC-A---------TCGAGGA--TGTGAG-CATATCCTCC----CAAA---T-TTN-GTTGCG----TNTA-TGANATGATAC-GGTA---TAGAACAGAAGAAAATG-CTCTG----T-TTTCT--CTCTG--CTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTAT----TTTTCGAA--TTCCAG---GGT--TGT-ATT-NTG--TG--------ACAAAAA-CGAGGGG-----TATACCCTG-TTTTTGTTNTTT--GCTTTTA-CATTC--GCATCTGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGTA-TGTTTTGATTGATTTCATAATCAC------T-ATAGCCCCTCTTTCGAAGGTTGG-TTT-GAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGTTT-TTCTC--ATATG----TCGT-------ATGGCTTCNCCTTTGATAAATCCCT-TAAAA-CTG-A-GG-ATTGTG-TGCACTTTTTC--A-TCCAAA-TATTGGAAAG-GTATTGGTAGGTTTG----ATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACACCTGTAGTGTCTAAAAAGTGCATTTCATTCACCGAAATTTCA-TATTGTGAATTTAAGCAATTGATGAGCAGAATT-CGCT--ATAGTG--AATA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAA-T-TCCTCGGTTAT-CTGATGTAGT-CTGATATCGC-ATACAGAT--GGAGCATTTC--GAC-CC-----ATAGCAC-ATCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNA-G-AGATAGCTCAGAT-C-T----TTAA-TTGATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTA--TGTTTGTACTGCAGTA----ATTAATTCCTCAAACTGC-ATGTTTTGTGTAGAGTGATGTNACACCATAG-CTGAC--AT--AAACATT-CGCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATG-AAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCT-G-AG-AAT----GG-GTCGCCCCGCCGG-AAATACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGAAAAA--CGTCTAGGT-CAATT--GGGCAGAAGATAT-A-TCTGCCT-AGCC-TCGTATTATGGTGCT-T---T-GT-GT-AAGA--A-TAATA-TGTAG-TATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTT-GT-AATT-GGACAGCTGAGAATAGTA-ATGTATT----GGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCACA--CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTNTACGCAAAGAT-TAGCGTCCCGATCGAAACGCCTGGCCATT
Reference ( family-1976 ) : NNNTTCAAAT-TG-TACAT---ATGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCANNAATCACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGC-G-GTTA------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-A-T-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCAC-A---------TNGAGGA--TGTGAG-CATATCCTCC----CAAA---T-TTN-GTTGCG----TNTA-TNACNCGACAC-GGTA-T-TAGANCANAAGAAGATGACCCTG----T-TNTCC--CTCTGCACTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTATA---TTTTCGAA--TCCCGG---GGT--TGT-ATT-NTG-ATG--------ACAAACA-CGAGGGG-----TA-ACCCTG-TTTTTGTTATTT--GTTTTTA-CATTC--GCATCTGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCNAGTACCA-CTTGTA-TGTTTTGATTGATTTCATAATCAC------T-ATAGCCCCTCTTTCGAAGGTTGG-TTT-GAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGTNT-TTCTC--ANATG----TTGT-------ATGGCTTCNCCTTTGATAAATCCCT-TAAAA-CTG-A-GG-ATTATG-CGCACTTTTTC--A-TCCAAA-TATTGGAAAG-GTAT-GGTAGGTTTG----ATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAANCCTAACTTCCCTTGTACACCTGTGGTGTCTAAAAANTGCATTTCATTCACCGAAATTTCAGTATTGTGAATTTAANNAATTGATGAGCAGAATT-CGTT--A-AGTG--AATA--CCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAA--ATTGGTTTATAA-T-TCCTCGGTTAT-CTGATGTAGT-CTGATATCAC-ATACAGATGGGGAGCATTTC--GAC-CC-----ATAGCAC-ATCCAATGATCT---GTTCGTAAATTTTTGAATTCAA--TT----------AAAAN-TATTATTTTCCAAAATTAATCTNA-G-AGANAGCTCAGAT-C-T----TTAA-TTGATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTA--TGTTTGTACTGCAGTA----ATTAATTCCTCAAACTGC-ATGTTTTGTGTAGAGNGATGTNACACCATAG-CTGACCAGTC-AAGCNTT-CGCTGTTGGGTCTCAAGTACAATCAAACCCTCGATT-TTNGTGATAA-AATCNGAGCTATC-CCTGATGGAAAGTGCTTAATTTTTGCACTATAGGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTA-GGCGT-GCCTATC--G-AG-AAT----GG-GTCGCCCCGCCGG-AAATACTGCCGAACTGCAGCAACCATTACGTTCGATTTNATGAAAAAAACGTCTAGGT-CAATT--GGGCAGAAGATAT-A-TCTGCCT-AGCC-TCGTATTATGGTGCT-T---T-GT-GT-AAGA--A-TNATA-TGT-G-TATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGTCTT-GT-AATT-GGACAGNTGAGAATAGTACATGTATTCCAANGNANTTTAGCTGT-CNTTCTCCTTCNTTAATGTAATCATATTTGGCTGATTTTCGCATGATAACGCACAGTCATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTT-GTGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGGTAATTCTGTACATCATCCGACAATTTATCT--GACGTGAGATTAAACACA----TGTTCTCTACATACAA-GGAC------TTTAGCA----CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGTTCCGCGTTTTNNACGCAANGATNTAGCGTCCCNATCGAAACGCCTGGCCATT
gi|1 : TTCAAATCTGATACATTGCACATTAAAT-G----GAATTTAGTGA-AA-AAT-ATTATGGCCC--ATGCA--GCCACGCAC-TCACAAACCACTT----GACTC---T-ACAGCTAAGTTTAAAAGTGTTT-CGGC-G-TGTATCAGACGTGA-T----A-----GA--G-TT--AT-GA---TAT-TGG-A--A-TGATTGA-TTTGA----TT----A-A-T-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTGAC----TA---CAAATTATC-T-ATG--CACGTTT-T--ATTA---T--TCAT-A---------TAGAGGA--AG-GAGACA-ATCCTCC----CAAA---T-TTG-GTTGCG----TATATTCAGAAGATAT-G--A-T-TA---CAGAAG-----CATTTTA----T-TTTC----------------AAT-T-G-CAACA----TT----AAAA-------TTATGCGTTTATG---TTTTCGAA--TCTCGC---GGT--TGT-ATT-ATG--TG--------ACAAA-A-CGAAAGG-----TA-ACC----TTTTTG--ACTT--CTTTATA-CAGTCAAG-ATCTACTAGCAGAAG--TGGCTCGATC-TA-GTTA-TTCAATACCA--TTGTA-AG-TTTGATTG--TTCATAATCAC------T-ATAGCCTCTCTTTCGAAAGTTGG-TTT-GAAAT-CG-TTAAGAATTTCTTGAAA-----ACGTCTGAATT-----GCTT-TGTGT-TTCTCA-AAATG----TCAT-------ATGGTTTCTCCTTTGA-AAATCCCT-TAAAA-CTG-A-GG-ATTGTG-TGCACTTTTTC--A-TCCAAA-TATTGGAAAG-GTAT-GGTAGGTTTG----ATGTAC--TTTTGAA-ATCTAGGATATCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAAAGTGCATTTCATTCAC--GAATTTCA-TATTGTGAATTTAAGCAATTG-TGAGCAGAAAT-CGCT--ATAGTGAAAATA--CCATGAATTTCTTTTTCTTCACCATTGAATATAATG-AACCATCATCACGATAACGCCGCAC-GTACGTTATGCGATG-TTACTTGGAA--ATTGGTTTATAATT-TCCTCGGTTATCCTGATGTAGTCCTGATATCACAATACAGAT--GGAGCATTTCAGAAC-CCCATTAATAGCACAATC--ATGATCT---GTTTATAAACTTTTGAATTCAAATTC----------AAAAA-TATTGTTTTCCAAAAGTAATCTGA-G-AGATAGCTCAGATGC-T----TTAATTTGATGGTAT----------TT-GTTTTAAGGCAGTAGACGGAT-TT-TCCGATT-TA---CTGTAGTTATTTATTTGTACTGC-GTA----ATTAATTCCCAAAACTGCGATG-TTTGTGTAGAGTGATTTGACATCATAGTCTGACCAATTAAAACATTCCGC-GTT-AGTCTCAAGC---------TTCTCGATTATGGGTGATAAGAATCAGAGCTATCGCCTGATG--AAGTGC-TAATTTTTGCACTATATGTGTCAGAAAAATAAGCAACTTAGCTGACTGATC-TTT-CCGTGTGGCGTCGCCTATCT-G-AGAAAT----GATGTCGCCCCGCCGGAAAATACTGCCGAAACGCAGCAACAATTAC--TTGATTTCATGAGAAAAACGTCTAGGTCCAATT--GGGCAGAAGATAT-A-TCTGCCT-AGCCATCGTTTTATGGTGCT-T---T-GT-GTAAAGAAGA-TAATACTGT-G-TATCATCCAACACACCCTGCCATTTTCAT-TTTGAGAGTTTTTCTTG-ATTAATTTT-ACAAGATTTTGTGACTTGGTAAATTGGGACAGCTGAGAATA-TA-ATGTATT----GGGAA-TTAGCGGTACGTTCTCCTTC-TTAATATAATCA-ATTTGGCTAA-----GCATAATAACGCA----CATGTTGTTTTTATCGGCGTTCTTGATTATGATATCTTTGCATTTTCTTGGATCTATCAAAGACTGCCGTTCAGAATTACTTAAATTGTCGTGAATTTTTAACGTTTGCATAGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTC-AAATCCGCTATTTGTACGGGATGGATGAATCTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-TAAC------TTTAGCA----CTGTGTTTTCGTGC-T-AGCCGAGCGT-TTTTGTTTAATGCTCTGCGTTTTCTACGCAAAGATTTAGCGTTCCGATCGAAACGCCTAGCCATT
gi|10 : aacGA-AC-AATTAT-ATGGCTCCAAT-CTTTGCCATGTACTACAC-AATTACTT----GACTC---TGACA-CTA---TTAA--GTGTTTCCGGC-A-GTC-------GTGA-TATTGA-----GG--G-TT--AT-G----TATCTGA-ATGA-TCATTAA-TTTG---------------------GA-T----------TTTTTCT--GCAAGCGAAATTT-CT--ACCTCA-TCAGG-G--ATTCTA-TT--TGACTA-T----TA---C-AATTATCAG-GGG--CA-ATTT-CATATTACTTT--TTACAA---------TCAAGGA--ATTGAA-C-TATCC-CC----CATA---TGTTC-TTTAAT----TTTG-CTCTTTGATGTAGGTA----GGAACTGGGGGAAATAA-TCTG----T--------CTCT---CTACAGGATGTGGCCAGTA----TT--TTAAA------------GC-TTCA------------------------GGTTATGT-AAT-TTG-TTG--------ACAAAAA-CAAGGGGATATACA-GCTGTG-TTATTGTTCTTT--g
gi|11 : AAAT-GTC--GAAT---GTAAGAA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCA-CAATCACTT----GACTC---
gi|11 : acccagtaacgttttagacaatgcgtccaagattgttaacggACTCGTTGAGAA-AAT-AT-AGGGCTTCGAT-CA--GCCACGTACATCAC-AATCACTT----GACTC---T-ACA-CTAA--TTAA--CTCTTT-CGGC-G-GT--------GTGA-TGC--A-----AG--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-A-TCAATCGA-TTG-ATGT-TGTTTTTCT--GCATGCAAA---T-CC--GCCCAA-TCA-G-G--AGTCTA-TT--TGAGGT-C----TA---C-AATTATC---ATG--CA-ATTT-C--ATTA--TT--TTACAA---------TTGAGGA--TGTGAG-CATAT-CTCC----CAAA---T-TTgttgagaaaatatagggcttcgatcagccacgtacatcacaatcacttgactctacactaattaactctttcggcggtgtgatgcaaggttatgatattgaaatgattgatttgattaatcaatcgattgatgttgtttttctgcatgcaaatccgcccaatcaggagtctatttgaggtctacaattatcatgcaatttcattattttacaattgaggatgtgagcatatctcccaaatttt
gi|12 : acccagtaacgttttagacaatgcgtccaagattgttaacggaaatgtcgaatgtaagaaaatatatggctccgatcagccacgtacctcacaatcacttgATAATCAGCATA-CTGACTGGTCTCTT-CCGTA-GGCGT-G--TATCTGA-AA-AAT----GG-GTCGCCCCGGTGG----TA-----GAA-----------ATTAGGT-CAATTTTATGAAA------------T-C---T--GAGCAGAGGATCA-A-TCTGCTT-AGCC-TCGTATTATGGTGCT-T---T-----T-AA----A-TGGTA-TGTAG-TATCATCAAGCACACT-----ATTTTCACATTTGAGAATTTTTCTTGTCTTAATTTTCACAAGATTGTGTGTCTT-GT-AATT-AGACAAATGAGAATAGTACATGTATT----TGGAATTTAACTGT-CTTTCTCCGT----AATGTAATCA------GCTGATTTTCGCATGATAACACACAGTCATATTGTTTTTATCGACTTTt
gi|13 : gatcTACTCGTAAGTATTTTTGTACAA-TATCCTTG-TCCT-CTGATGCAGT-CGGTTATCG------------------TTTA--GACTCC-----ATAGCAC-ATCCAGTGATCT---GTATGTAAATTTTTAAATTCAA--TT----------GAAATGTATTATATTCCAAAGTTAATCTCA-G--GAAAAATCATAT----------------AT----------------T-AAAT----GCA-TACATATAT-CTGTCCGATT-TA---CTATAGT-A--TATTTCTACTGCAGTA----AATGATTCTTCAAATTGT-ATGTTTTGTGTAAAAAGATGTTACACCATAG-CTGAC-------AG---T-CGCTTTTTGGTCTCAAGTACAATCAAACCCTCGATT-TTTGTAATAA-AATCTGAGCTATC-TCTAATGGAAataaattccga
gi|15 : -G--AGTCGA-TTT-GCACTG------TA---CAA-TTATC---ATG--CA-GTTT-C--ATTA--TT---------------------------GCGAG-CAGATCC-CC----CAAA---T-TTTTGTTGCG----TTTA-TA---TGACAC-GATA-GGTAGAACA-AAGAAAATGAC---G----T-TGTCT--CTCTGCAC-----GATGT-ACCAGTA----TT--TCAAAAGC-----TCTTGC-TTTAT----TTTTCGAA--TTCCAG---GGT--TGT-ATT-TTG--TG--------ACAAAAC-CGAGGGG-----CATACCCTGTTTTTTGTTA-----------A-CAC-----CA---GATAAC---AG--TGGCTCGATCATATACTACTCAATTACTAGGTTATA-TGTgt
gi|16 : GA-AA-AAA-A----GGCTCCGAT-CA--GCCACGTACCTCACAATTCACTT----GACTC---T-ACA-CTAA--TT-A--GTGTTT-C-GC-G-GT--------GTGA-T----ACGT--GA----TT--AT-GA---TAT-TGA-A--A-TGATTGA--TTGA----TT----A-ATT-----GA-T----T-T-TGTTTTTCT--GCATGCAAA---T--C--GCCTCA-TCA-G-G--AGTCTATTT--GCAGT--C----TA---C-AATTAT--T-ATG--CA-GTTT-T--ATTA--TT--TCACAA---------TTGAGGA--TGTGAG-CAAAT-CTCC----CAAAT--T-TTG-GTTGCG----TTTA-T---ATGACAC-GATAGG-TAGAACAAAgtgtaatttaccagatcatagatctttttctgtttgaa
gi|18 : cctgaacagtttcaaaccggctaaagtcttagtagagtgaaaga-AA-AAT-CT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAATAACTT----TATTC---T-GCA-C-----TTAA--GTGTTT-CGGCTG-ATTG------AT-A-C----A-----AG--G-TT--AT-GG---TAT-TGA-A--T-TGATTGA-TTT-A----TC----A-A-TC----GA-TTGGAT-T-TTTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TTG-GCACT--T----TA---C-AATT-TT-T-ATG--CA-GTTT-C--ATTA--TT--TTACAA---------TCGAAGA--TGTAAG-CATATCCCCTAGGATAAAATTT-TTT-GTTGCGTT--TATA-TGACACAATA--GGTA-
gi|19 : agC--GCACTTAGTAAGAA-AAT-AT-ATG-CTTCGTT-CA--GCCACGTACTTCAACAATCACTT----GATTG---T-ACA-------TTAG--GTGTTT-TGGT-G-GT--------GTGA-T----AC----GA--GGTT--GT-GA---TAT-TGA-A--C-TGATTCA-TTTGAGTTGTC----A-A-T-----CA-----AT-TGTTTTTTTCT--GCATGCAAA---T-AC--GCCTCA-TCA-G-A--AGTCTATTT--GCAgaatag
gi|2 : cattaacccccatccccacaatcacgcattttaacgcataatctgtttcctcacaatcaATCAC------T-ATAGCCC-TCTTTCGAAGGTTGG-TTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GCTTGTGT-T-TTCTC--ATATG----TCGT-------ATGGTTTCTCCTTTGATAAATCCCTATAAAA-CTG-A-GGGACTGTG-TGCACTTTTTCG-A-TCCAAA-TATTGGAAAG--TATTGGTAGGTTTG----ATGTAC-GTTTTGAA-ATCTAGGAT-TCGATTTGCTTCAAATCT--ACTTCC-TTGTACAT-TGTAGTGTCTAAAA-GTGCATTT-ATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CTTT------TC--AA-A------GAATTTCTTTCTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAA--ATTGGTTTATAA-T-TCCTCGGTTAT-CTGATGTAGT-CTGATATCAC-ATACAGATGGGGAGCATTTC--GAC-CC-----ATAGCAC-ATCCAATGATCT---GTTCATAAACTTTTGAATTAAA--TTCAAAAATTCAAAAAA-TATTGTTTTCCAATATTAATCTGA-GGAGATAGCTCAGAT-C-T----TTAA-TTGATGGTGTA---------TT-AATT----GCA-TAGACAGAT-TTGTCCGATT-TA---CTGTAGT-A--TGTTTGTACTGCAGTACGTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTAACACCA-----------AT--AAACATT-CGCTGTTAGGTCTCAAGT----------TCTCGATT-TTGGTG-TAA-AATCAAAGCTATC-CCTGATG-AAAGTGCTTAATTTTTGCACTATAGGTGTCAGAAAA-TAATCA-CATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCT-----------------GG-GTCGCCC-GCCGG-AAATACTGCCGAACTGCAGCAACCATTACGTTTGATTTCATGAAAAA--CGTCTAGGT-CAATTTTGGGCAGAAGATAT-AACCTGCCT-AGCC-TCGTATTATGGTGCT-T---TTGTTGT-AAGA--AATAATA-TGT-GGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGACTG-GT-AATT-AGACAGCTGAGAATAGTA------TTCCAAGGCA-TTTAGCTGT-CGTTCTTCTTCTTTAATATAATCATATTTG---------CGCATAATAACGCACA----TGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTT-GTGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATGCAA-GAAC------TTTAGCA----CTGTGTTTTCGTGC-TAGG-TGAGCTT-TTTTGTTTAATGCTCTGCGTTTTATACGCAATGAT-TAGCGT-CCGATCGAAACGCCTGGCCATTctttac
gi|20 : AT-TG-TCCAC---ATGCCATATTGCG--GGATT-GCT---AA-GAT-AT-ATGACTCCAGT-TA--GCCACATACCTCAACAATCACTT----TACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGC-G-GT--------GTGA-T----AT----GAG-G-TT--AT-GC---TAT-TGA-A--A-TGATTG
gi|21 : atgtcatatttttcatgtGCAC-ATCCAATAATCTACAGTTCATAAATTTCTGAATTCAA----------------AAT-TGTTATTTCCCAAAATTAATCTTAGG-AGAAAGCTT-GAC-CGTCATGTTAG-CGAATGGTGTGTTAGAACTGTT-AATT----GAA-TGGACAGATAGTATGCTATTCTAACGCTGTATTTA----TTTGCAgcagtgcttaaatcggcgattgatttctt
gi|22 : T-GAATT-C---TAAGAATTTCTTGAAATTAGTACATGTCCATCATTTGGGTT-TTTTT-TTCTC--ATATG----GTAT-------ATGGTTTTATTTTCAATAAATCCCT-TAAAA-TTG-ATGG-ATTATG-CGT------------TCCAAA-TAGTGTAA----TGT-G-----TTTGCAAGATGGA-----TTAAATATCCAGGAT-GCGAGCTGCCTCAAAtgagtccaaaatcaaat
gi|23 : G--CA-GTTT-C--ATTA--TA--TTA--A---------TTA-------------CA-ATC----------AA---T-TT--GTTGCAGT--TATA-TGACATGATA--GGTA-----GAACAGA-GAAAACG--TCTGAAATT-TGTCT--CTCTGCA-----AGATGT-GCAAGTA----TA--TTAAAAGC-----TTTTGT-TTCAT----TTTTCAAA--TTCCAG---TGT----C-ATTATTA-ATG--------ACA
gi|24 : ATAACAGA-G--TAACTCGATCGTA-GTTA-TCAAGTACCA-CTTGTA-TGTTTTGATTGATTTCATAATCACTATTAGT-ATAGCCCCTCTTTCGAGGGTTGGTTTT-GAAAT-CG-CTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GCT
gi|25 : TCACCCGACAATTGATCT--GATTTGAGATTAAGCACA----TGTTCCCTATATACAATGTACAATCAATTTAGCA----CAGTGTTTTCG----T-GG-CGAGC-TGTTTTGTGTAATGTTCTGCGTTTTGCAAGCAA
gi|26 : CCTTTAGTTAGTAAAAGGTAATTCTGTACATGATTGTACAATGTATATACGACGTGAGATTAAACACAACTGTGTTTTC----------GTAC------TTT-GCAAG--CTTTGTTT---TGT-T-AG-TTTGT-T-TTTTGTT
gi|27 : TTAAATACG----TACTCTCTGTATACAA-GGAC------GTCAGCAATATTTATGTTTTTGTACTT-TA-CAAGC-A-TTTTGTTTAATGTTCCAC-TTTTTAACACAAAGATATAACATCCCCATCAAA
gi|28 : G-A-GG-ATTTTG-AGCACTTTAGC--AATCCAAA-TATTGAAATGAGT-T-GTTGAGTTTA----ATGTATAGTTTTAAA-GTCCA
gi|29 : acagaattgcaTA-CTGGCTGATTTTTTTCCGTA-GGCCA-GCTTATC--GGAG-AATTTATAC-ATCACCCCGATGA-AAATACGGGAGTATTGTAGCAACCACTGTGTTTGATTTAATGAAAtaaagttaacggtgtaaaatatatttcctt
gi|3 : actTGA-AG-AAT-AT-ATGGCTCCGATTCA--GCCACGTACCT--ACAATCACTT----GACCC---G-A-G-CTAA--TTAA--GTGTTT-CGGT-G-GT--------GTGA-T----AT----GA--G-TT--AT-GA---TTT-TGA-A--AATGATTGAATTTGA----TT----C-A-TT----GA-T------T-TGTTTTTCT--GCATGCAAA---TTCC--GCCTCA-TCA-G-G--AGTCTA-TTTGGCAGT--C----TA---CAA-TTAT--T-ATGG-CA-GTTT-T--ATTA--TTGTTCAC-AG--------TGGAGGA--AGTGAG-CATATC-TCC----CAAT---T-TTC-GTTGAG----T----TAATCTGACAC-GATA-T-TAGAT-ACAAGAAG----TCCTA----T-TTTTC--TTT----CTGCAGGATGT-GCCAATA----TT--TCAAA-GC-----TTTAAT-TTTAT-----TTTCGAAATTCCCAG---GGT--TGT-ATT--TG--TG--------ACAAAAAACGAAGGG-----TATACCCTG-TTTTT-TTGCTT--TTTGTTAACAT-C--ACA---GATAACAGA-G--TGGCTCGATCTAA-GTTA-TC-AGTAC-A-CTTGTAATGTTT-GATTGATTTC-TAATCAC------TTATAGCCCCTCTTTCGAAGGTTGG-TTTTGAAATGCGATTAAGAAATTTCTGAAAT----ACGTCTGCATT-----GCTTGTGTTTCTTCTC--ATATG----TTGT-------ATGGTTCCTCCTTTGATAAATCCCT-TAAAAACTG-A-GGGATTGTAATGCACTTTTTTCGA-TCCAAAATAT-GGAAAG--TATTGGTAGGTTTG----ATGTAC-GTT--GAA-ATC-AGGAT-TCG-TTTGCTTCAAAGTCTAACTTCCCTTGTACACCTGTGGTGTCT-AAAATTG-ATTTCATTCACCGAAATTTCAGTA-TGTGAATTTAACAAATTGATGAGCAGAATTCCGCTAAA-AGTG--AATAT-TCGTGGATTTCTTTTTCTTCA-CATGGAATATAATGAA
gi|30 : G----T-TGTCT--CCTTG----GC--GATGT-GCCAGTA----TTAATCA----------TTTTAC-TTT------TGCTAGAA--TTCAAG---AAT--TGT-A-T-ATG-GTG--------ACGAAAG-CAAAGAG-----TATATCC-A-TTTTg
gi|31 : -G-AGATAGCTCAGAT-C-T----TTAA-TTGATGGTGT----------TTTAATT----GCA-TAGACGGAT-TTTTCCGATT-TA---CTGTAG-TA--TTTTTGTACTGCAGTA----ATTAATTCC
gi|32 : TT--GGGAAGAAGATATAA-TCTGCCCGAGCC-TCATGCAATGTTGCTATAGAT-GT-GT-AGAC--A-TTATA-TCTAA-TATTATCAAACAAACCCT-CTA
gi|35 : aagtCCA-CTTGTA-TGTTTTGATTGATTTCATAACCAC------T-ATAGGCCCTCTTTCAAAGGTTGG-TTT-
gi|36 : TCATATCTAAGAGTTTT-CTTGCATTAATTTT-ACACAAATTTGTGTCTT-GT-GATT-GGACAG
gi|39 : AATTGATGAGCAGAATT-CGTG--ATAGTG--AATAACTCATGAATTTCTTTTTCT
gi|4 : -AA-AAT-AT-ATGACTCCGAT-CA--GCCATGTACCTCAT-AATCACTT-------------------------TAA--GTGTTT-TGGC-G-GTT--------TGA-T----AT----GA--GGTT--AT-GA---TAT-TGA-A--A-TCATTGA-TTTCA----TT----A-A-TCAATGGA-TTGGCT-T-TGTTTTTCT--GC
gi|4 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaag-----TTTTGC-TTTA-G---TTTTCAAT--TACCAGCTGGGT--TGT-ATT-TTG--CG--------ACCAAAA-CGAGGGG-----TACACCCTG-TTTTTTTTTTTTTTGCTTTTA---TTA--ACATCAGATAACAGA-G--TGGGTCGATCGTA-GTTA-TCAA-TACCA-CTTCTA-TGTTTTGATTGATTTCATAATCAC------T-ATAGCCCCTCTTTCGAAGGTTGGTTTT-GAAAT-CG-ATAATAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGTGT-TTTTC--ATATG----TCGT-------ATGGCTTCTTCTTTGATAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgctttagttttcaattaccagctgggttgtattttgcgaccaaaacgaggggtacaccctgttttttttttttttgcttttattaacatcagataacagagtgggtcgatcgtagttatcaataccacttctatgttttgattgatttcataatcactatagcccctctttcgaaggttggttttgaaatcgataataatttcttgaaatacgtctgcattgcttgtgtttttcatatgtcgtatggcttcttctttgataaatacaa
gi|40 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaagaaaatatatgactccgatcagccatgtacctcataatcactttaagtgttttggcggtttgatatgaggttatgatattgaaatcattgatttcattaatcaatggattggctttgtttttctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCGAAT-TA---CTGTAGT-A--TGTTTGTACTGCTATA----ACTAATTCTTCAAACTGacaa
gi|41 : TGCAGCATGT-GCCGGTA----TC--TTAAAAAC-----TTTTAC-TTTAT----TTTTCGA
gi|42 : tcttCCGCCGG-AAATACTGCCGAACTGCAGCAAC
gi|5 : A-AT-AAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAATCACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGC-G-AT--------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATA-TA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA---------ATTA-----------A---------T-GATGA--TTTGAG-CTTATTCTTA----AAAA---A-ATT-ATTGCA----TTT--TGATAGGA------------AGATCCGAAAAAAAT-----TG----T-CTTTT--CTCT---CTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTATA---TTTT-GAA--TTCCAG---GGG--TGT-A-T-ATG-ATA--------ACAAACA-CAAGAGG-----TA-----T--TTCCTGTTATTT--GCTTTT---ATTT--GCATCTGATAA---AAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGTA-TGTTTTGATTGATTTTATTATCTT------C-AAAATCTTTTTTTT----------TTT-TAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGCTT-TTCTCTAATATGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-CAAAA-CTGAA-GG-ATTAT
gi|6 : TCAAAT-TG-TA--T---ATGT----T-GTCAGGAGTT----GA-AA-AAT-AT-ATGGTTCCCAC-CA--GCCATGTACCTCAACAATCACTTAATTGACTGATGT-ACA-CTAA--TTTA--GTGTTT-CAGC-G-GT--------GTGA-T----AT----GA--GGTT--AT-GA---------------------------GA----TT----A---------GACT---AT-T-T-TTTCTCTATGCATGCAAA---T-CT--GCCTCA-TCG-G-G--TGTCTA-CT--------------TA---CAATTTATA-T-TTG-------TT-C--ATTA--TT--a
gi|7 : taaggtgaatgtaaggtcaaatatgataattgcgtgtttcaaatacttaattgttagcaattaatgcaactagttatgtccatctaattgttatcagttatgtagaaattcagttattaaatataactacacatcagctgctggagactgccattttgcaagaaaaaagtttctttgatatttcccacaataccatctggtgatgacgcatgggggggggggcatttggctctgtgtgacgagctttaattactagctgaagcttcaactggaaataccagtgatttacgattgattgaaaatgactgagggaatgataaaacttcatgcacttgtgacatttttgA-AATAAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAATCACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGC-G-AT--------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATA-TA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA----------TTA-----------A---------T-GATGA--TTTGAG-CTTATTCTTA----AAAA---T-T---ATTGCA----TTT-------TGATA--GG------AGATCCGAAAAAAAT-----TG----TCTTTCT--CTCTG----G-AGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTATA---TTTT--GA--TTCCAG---GGT---GT-AT--ATG-ATA--------ACAAACA-CAAGAGG-----TA-----T--TTCCTGTTATTT--GCTTTTA---TTT--GCATCTAA-----AAAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGTA-TGTTTTGATTGATTTTATTATCTT------C-AAAATCTTTTTTTT----------TTT-TAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGCTT-TTCTCTAATATGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-CAAAA-CTGAA-GG-ATTATcttga
gi|8 : TTCAAAT-TG-TACAT---ATGTCAG--------GAGTTCG-----AA-AAT-AT-ATGGCTCCCAC-CA--GCCATGTACCTCAACAATCACTT----GATTC---T-ACA-CTAA--TTAA--GTGTAT-TAGC-G-GT--------GTGA-T----A-----TA--A-TT--AC-GAGGTTAT-GGGTC--A-TGA--GA-TTTGA----TTTCTCA-A-TA----GA-CTG-AT-T-TTTTTCTCTCCGCATGCAAA---T-CT--GCCTCA-TCA-G-G--GTTTTA-T
gi|9 : ttttgttgtttttttttttagaaatcagctacacatcagctgttggaggctgccaatttgcaagaaaaagttatggctcttttttgtatttcccacaatgtcatctggtgatgacgcatcagaggcaactgcctctcagcggtgagcattaattattagctgcagcttcaactgaaaataccagtgatttgggatggattgatataaatgacagagaaaaataaaacttgatgcacttgtggacattgtgacattttTT-CAGC-GAGT--------GTGACT----AATCGCGA--G-TTTCAT-AA---TGT--GA-G--A-TGATTGG-TTTGA----TT----A-T-T-----GA-T---TT-T-GGTTTTTCTG-GCATGC-AA---T-CCCAGCATCATTCA-GTGACAGTCTA-TT--GC-GT--C----TAAACCAAATTACT-TAATGCCCA-GTTTGCTAATTA---T--TCAC-AAAATTTTTGTAGAGGATGTGTGAG-CCAATACTTC----TTAA---T-TTG-GTTGCGGGTTTATA-TGAACAGAT-C-GG---T-CAGAACAG-AGAAAA-GTCTCT-----T-TTTCCTGTTCTTTTCTGC-GGATGT-GCCAATAGTTTTT--TC---AGCCTTTTTTTTGC-TTTAAATGTTTTTCGAA--TTCCAG---GGT--TGTAATT-GTGTGTGAACAAAAAACAAAC--TGAGCGG-----TATACC-----TCTTGTTTTTT--GCTTTTag
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTATCATTTTTATGGAAATCAGCTATCAAATATAGCTACACATCAGTTGCTGGAGTCTGCCATATTGCAAGATAAAGTTATCGCTCTTTTTGATATTTCCCACAATATCATCTGGTGATGACGTATACAGGGCAATTATCTCTGAGTGATGCATGATGAGCTTTAATTATTAGCTCCAGCGTCAACCAGTGATTTGGGATGGATTGATGAAAATAGGGAAAATGATGAATCTTTATGCACTTAAGGACAAAGTGACTTTCTTTCAAAGTTTGCATGTTGTTGTCATAATATAAATTTCGGGAAATATAGC
Unaligned ( gi|17 ): GAATATCACATTTGATTTAAAGGGAGCGCAAGGTCAAAAATGATAATTGGTCAATTCAAATACTGCGTTGGTAGCAATTAATTCCACTGGTTATTTTCATCTGATTGTTATCAGTTGTGTAGAAATCAGCTATTAAATACCGCTACACATCAGCTGCTGGAGGCTGCCATTTTGAAAGATGAGAGTTATCGCTCTTTTTGATATTTCCCACAATCCAATCTGTTGATGATGTACAAGAGTCAATTGCCTCTGAGTGAAAGCAGCTGATCATGTCTGACTGCAA
Unaligned ( gi|33 ): ATATGGCTACACATCAGCTGCTGGAGGCTGCCATTTTGCAAGATAAAGTTATCTCTCTTTTTGATATTTCCCATGATACCA
Unaligned ( gi|34 ): TAAACCCATCTGCTGATGATATACAAGGGGCAACTGCTTTCGAGTGAAAGCAGCTGGTCACGCCTGATGGCACCGCAAAG
Unaligned ( gi|37 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Unaligned ( gi|38 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Alignments
lowQualScore : 1 1 444444444444444444 2222222 1111111 3333333333333333 4444444444444444444444 11 55555555555555 1 2222 1111 55555555555555555555555 11111111 111111 4444444444444444444444444444 44444444444444444444444444444444 1 111111 2222222 3333333 2222 111111 1 11 1111 11111 22 55555555555 111 22 2 22222 1 11 2 2 1 2 1 1 11 2222222 1 1 1 11 111 1 1 2222222222222 11 1 33333 1 111 666666666666666 11 1 222222 4444444444 1111 111 1111111 22222 1 2 777777777777777 1 22 1 6666666666 1 1 1 1 1 1 1 1 1 1 1 3333333333333 11 222222 2 1 1 333333333333333333333 1 1 1 1 1 1 1 111 1 1 5555555555555555 33 11 1 1 1 1 33333 11 1111 222222 33333 1111 222 111 1
lowQualScore : 0 0 444444444444444444 3333333 2 2 2 5 33 3 2 6666 555 3 3 888 44 2 5 2222222 2 6666666666666666 33 5 555 2 2 5555 3 0 6666 5555555555555555555555 3 3 9 11 555 55555 3 3 6666 6 11111111111111 666 8 1 2222 88 77 2222 00000000000000000000000 666 4 77 5 2 8888 11111111 222222 8888888888888888888888888888 0 22222222222222222222222222222222 4 8888 55 11 99999 3 7777 3 55 4 777 4 4 4 4 2 777 777777 4 1 4444444 8888 2 8888 5 7777777 1 3 0 4444 3 5 5 3 2 5 5 444444 5 3 4 5 4 5 33 3 0 4 0000 22222 88 5 5 5 11 44444444444 1 1 999 999 0 5 0 11 77 0 8 0 0 0 22222 8 0 3 88 6 3 3 6 6 6 3 3 3 0 0 1 2 33 5555555 6 7 5 5 5 0 88 777 6 3 3 9999999999999 88 3 33333 0 2 777 222222222222222 11 1 6 6 0 8 555555 8 5 3333333333 8 7777 8 8 8 6 111 7777777 33333 3 3 1 000000000000000 3 00 3 5555555555 3 7 3 3 2 5 1 5 2 0 3 0 0 0 666 3 0000000000000 2 88 0 8 2 22 55 0 33 7 333333 0 0 0 1 666666666666666666666 1 0 7 2 0 3 3 7 0 1 0 0 0 6 3 000 7 3 6 3 7777777777777777 00 88 5 5 1 1 5 3 33333 33 7777 0 1 8 1 333333 0 33333 0 0 8 0000 000 2 88 777 2
lowQualScore : . . .................. ....... . . . . .. . . .... ... . . ... .. . . ....... . ................ .. . ... . . .... . . .... ...................... . . . .. ... ..... . . .... . .............. ... . . .... .. .. .... ....................... ... . .. . . .... ........ ...... ............................ . ................................ . .... .. .. ..... . .... . .. . ... . . . . . ... ...... . . ....... .... . .... . ....... . . . .... . . . . . . . ...... . . . . . . .. . . . .... ..... .. . . . .. ........... . . ... ... . . . .. .. . . . . . ..... . . . .. . . . . . . . . . . . . . .. ....... . . . . . . .. ... . . . ............. .. . ..... . . ... ............... .. . . . . . ...... . . .......... . .... . . . . ... ....... ..... . . . ............... . .. . .......... . . . . . . . . . . . . . . ... . ............. . .. . . . .. .. . .. . ...... . . . . ..................... . . . . . . . . . . . . . . . ... . . . . ................ .. .. . . . . . . ..... .. .... . . . . ...... . ..... . . . .... ... . .. ... .
lowQualScore : 0 0 777777777777777777 3333333 9 9 9 7 99 2 9 1111 000 1 1 222 22 9 7 1111111 9 8888888888888888 99 7 000 9 9 2222 1 4 5555 8888888888888888888888 1 1 2 55 888 00000 3 3 2222 2 44444444444444 444 8 2 5555 66 99 5555 55555555555555555555555 777 0 00 7 3 5555 11111111 111111 1111111111111111111111111111 9 66666666666666666666666666666666 0 5555 55 33 11111 6 7777 6 55 0 000 0 0 0 9 0 000 222222 4 9 6666666 2222 8 3333 7 2222222 7 7 7 7777 0 7 7 0 2 0 0 444444 0 4 5 0 4 0 88 2 2 5 6666 55555 99 7 7 7 44 33333333333 7 0 333 666 4 7 8 66 00 8 0 8 0 8 44444 0 0 2 33 7 3 7 7 7 7 3 7 2 0 0 2 5 88 2222222 7 3 0 0 5 7 33 777 7 3 3 7777777777777 33 3 33333 0 5 555 222222222222222 00 0 0 0 8 0 888888 0 6 0000000000 0 0000 0 0 2 7 777 7777777 00000 3 7 0 333333333333333 3 77 3 3333333333 3 3 3 3 3 5 0 5 0 0 2 0 0 0 000 0 8888888888888 5 88 6 2 5 88 22 2 88 3 444444 0 0 0 2 222222222222222222222 2 0 0 5 0 2 2 0 0 0 0 0 0 7 3 000 3 3 7 3 7777777777777777 33 33 5 5 0 0 5 3 33333 88 0000 8 4 0 0 000000 8 44444 8 8 0 6666 222 0 00 777 0
consensus : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAA-TCACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-A-T-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCACAA---------TNGAGGA--TGTGAG-CATATCCTCC----CAAA---T----TTN-G---TTGCG----TTTA-TGA-ATGACACGGTA--TAGAACAGAAGAAAATG-CTCTGT--TTTC----TCTCT-CTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---ACAAAAA------CGAGGGG-TATAC--CC-TGTTTTT--GTTNTTT--GCTTT-TA-ATTC--GCATCTGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGTA-TGTTTTGATTGATTTCATAATCAC------T-ATAGCCCCTCTTTCGAAGGTTGGTTTT-GAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATATG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCT-AAAAGTGCATTTCATTCACCGAAATTTCA-TA-TGTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTG--AATA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAA-T-TCCTCGGTTAT-CTGATGTAGT-CTGATATCGC-ATACAGAT--GGAGCATTTC--GAC-CC-----ATAGCAC-ATCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAA-TTGATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTA--TGTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATG-TTTGTGTAGAGTGATGTNACACCATAG-CTG----AT--AAACATT-CGC-TGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAG-AA-T----GG-GTCGCCCCGCCGG-AAATACTGCCGAACTGCAGCAACCATTACGTTCGATTTCAT--GAAAAACGTCTAGGT-CAA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGT-AAG-A--ATAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTT-GT-AATT-GGACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACG--CA--CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
Reference ( family-1976 ) : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAA-TCACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-A-T-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCAC-A---------TCGAGGA--TGTGAG-CATATCCTCC----CAAA---T----TTN-G---TTGCG----TNTA-TGANATGATACGGTA--TAGAACAGAAGAAAATG-CTCTGT--TTTC----TCTCTGCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---ACAAAAA------CGAGGGG-TATAC--CC-TGTTTTT--GTTNTTT--GCTTT-TACATTC--GCATCTGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGTA-TGTTTTGATTGATTTCATAATCAC------T-ATAGCCCCTCTTTCGAAGGTTGG-TTT-GAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATATG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAAGGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACACCTGTAGTGTCTAAAAAGTGCATTTCATTCACCGAAATTTCA-TATTGTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTG--AATA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAA-T-TCCTCGGTTAT-CTGATGTAGT-CTGATATCGC-ATACAGAT--GGAGCATTTC--GAC-CC-----ATAGCAC-ATCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNA-GAGATAGCTCAGAT-C-T----TTAA-TTGATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTA--TGTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTTTGTGTAGAGTGATGTNACACCATAG-CTGAC--AT--AAACATT-CGC-TGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGAAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAG-AA-T----GG-GTCGCCCCGCCGG-AAATACTGCCGAACTGCAGCAACCATTACGTTCGATTTCAT--GAAAAACGTCTAGGT-CAA--TTGGGCAGAAGATAT-ATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGT-AAG-A--ATAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTT-GT-AATT-GGACAGCTGAGAATAGTA-ATGTATTGGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCACA--CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTNTACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
gi|1 : TTCAAATCTGATACATTGCACATTAAAT-G----GAATTTAGTGA-AA-AAT-ATTATGGCCC--ATGCA--GCCACGCAC-TCACAAA-CCACTT----GACTC---T-ACAGCTAAGTTTAAAAGTGTTT-CGGCGTGTATCAGACGTGA-T----A-----GA--G-TT--AT-GA---TAT-TGG-A--A-TGATTGA-TTTGA----TT----A-A-T-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTGAC----TA---CAAATTATC-T-ATG--CACGTTT-T--ATTA---T--TCAT-A---------TAGAGGA--AG-GAGACA-ATCCTCC----CAAA---T----TTG-G---TTGCG----TATATTCAGAAGATATGAT---T---ACAGAAGCA-----TTTTAT--TTTC----------------AAT-T-G-CAACA----TT----AAAA-------TTATGCGTTTA----TGTTTTCGAA--TC-TCGC---GGT-TG-T-ATTATG-TG---AC-AAAA------CGAAAGG-TA-AC--C----TTTTT--G--ACTT---CTTTATACAGTCAAG-ATCTACTAGCAGAAG--TGGCTCGATC-TA-GTTA-TTCAATACCA--TTGTA-AG-TTTGATTG--TTCATAATCAC------T-ATAGCCTCTCTTTCGAAAGTTGG-TTT-GAAAT-CG-TTAAGAATTTCTTGAAA-----ACGTCTGAATT-----GCTT-TGT-GT-TTCTCA-AAATG-----------TCATATGGTTTCTCCTTTGA-AAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAAGGTA-TGGTAGGTTTGATGTAC--TTTTGAA-ATCTAGGATATCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAAAGTGCATTTCATTCAC--GAATTTCA-TATTGTGAATTTAAGCAATTG-TGAGCAGAAAT-CGCT-ATAGTGAAAATA--CCATGAATTTCTTTTTCTTCACCATTGAATATAATG-AACCATCATCACGATAACGCCGCAC-GTACGTTATGCGATG-TTACTTGGAA--ATTGGTTTATAATT-TCCTCGGTTATCCTGATGTAGTCCTGATATCACAATACAGAT--GGAGCATTTCAGAAC-CCCATTAATAGCACAATC--ATGATCT---GTTTATAAACTTTTGAATTCAAATTC----------AAAAA-TATTGTTTTCCAAAAGTAATCTGA-GAGATAGCTCAGATGC-T----TTAATTTGATGGTAT----------TT-GTTTTAAGGCAGTAGACGGAT-TT-TCCGATT-TA---CTGTAGTTATTTATTTGTACTGC-----GTAATTAATTCCCAAAACTGCGATG-TTTGTGTAGAGTGATTTGACATCATAGTCTGACCAATTAAAACATTCCGC--GTT-AGTCTCAAGC---------TTCTCGATTATGGGTGATAAGAATCAGAGCTATCGCCTGATG-AAGTGC-TAATTTTTGCACTATATGTGTCAGAAAAATAAGCAACTTAGCTGACTGATC-TTT-CCGTGTGGCGTCGCCTATCTGAGAAA-T----GATGTCGCCCCGCCGGAAAATACTGCCGAAACGCAGCAACAATTAC--TTGATTTCATGAGAAAAACGTCTAGGTCCAA--TTGGGCAGAAGATAT-ATCTGCCT-AGCCATCGTTTTATGGTGC-T-T---TG-TGTAAAG-AAGATAATACTGT-GTATCATCCAACACACCCTGCCATTTTCAT-TTTGAGAGTTTTTCTTG-ATTAATTTT-ACAAGATTTTGTGACTTGGTAAATTGGGACAGCTGAGAATA-TA-ATGTATTGGGAA-TTAGCGGTACGTTCTCCTTC-TTAATATAATCA-ATTTGGCTAA-----GCATAATAACG--CA--CATGTTGTTTTTATCGGCGTTCTTGATTATGATATCTTTGCATTTTCTTGGATCTATCAAAGACTGCCGTTCAGAATTACTTAAATTGTCGTGAATTTTTAACGTTTGCATAGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTC-AAATCCGCTATTTGTACGGGATGGATGAATCTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-TAAC------TTTAGC-A---CTGTGTTTTCGTGC-T-AGCCGAGCGT-TTTTGTTTAATGCTCTGCGTTTTCTACGCAAAGATT-TAGCGTTCCGATCGAAACGCCTAGCCATT
gi|10 : aacGA-AC-AATTAT-ATGGCTCCAAT-CTTTGCCATGTACTACA-CAA-TTACTT----GACTC---TGACA-CTA---TTAA--GTGTTTCCGGCA-GTC------GTGA-TATTGA-----GG--G-TT--AT-G----TATCTGA-ATGA-TCATTAA-TTTG---------------------GA-T----------TTTTTCT--GCAAGCGAAATTT-CT--ACCTCA-TCAGG-G--ATTCTA-TT--TGACTA-T----TA---C-AATTATCAG-GGG--CA-ATTT-CATATTACTTT--TTACAA---------TCAAGGA--ATTGAA-C-TATCC-CC----CATA---TGTTCTTT-AATTTTGC-----TCTT-TG--ATG-TA-GGTA---GGAACTGGGGGAAATA-ATCTG-----TC----TCT---CTACAGGATGTGGCCAGTA----TT--TT-AAAGC-----TT-----------------------------CAG---GTTATG-T-AATTTGTTG---ACAAAAA------CAAGGGGATATACAGCTGTGTTATT--GTTCTTT--g
gi|11 : AAAT-GTC--GAAT---GTAAGAA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTC-ACAA-TCACTT----GACTC---
gi|11 : acccagtaacgttttagacaatgcgtccaagattgttaacggACTCGTTGAGAA-AAT-AT-AGGGCTTCGAT-CA--GCCACGTACATCA-CAA-TCACTT----GACTC---T-ACA-CTAA--TTAA--CTCTTT-CGGCG-GT-------GTGA-TGC--A-----AG--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-A-TCAATCGA-TTG-ATGT-TGTTTTTCT--GCATGCAAA---T-CC--GCCCAA-TCA-G-G--AGTCTA-TT--TGAGGT-C----TA---C-AATTATC---ATG--CA-ATTT-C--ATTA--TT--TTACAA---------TTGAGGA--TGTGAG-CATAT-CTCC----CAAA---T----TTgttgagaaaatatagggcttcgatcagccacgtacatcacaatcacttgactctacactaattaactctttcggcggtgtgatgcaaggttatgatattgaaatgattgatttgattaatcaatcgattgatgttgtttttctgcatgcaaatccgcccaatcaggagtctatttgaggtctacaattatcatgcaatttcattattttacaattgaggatgtgagcatatctcccaaatttt
gi|12 : acccagtaacgttttagacaatgcgtccaagattgttaacggaaatgtcgaatgtaagaaaatatatggctccgatcagccacgtacctcacaatcacttgATAATCAGCATA-CTGACTGGTCTCTT-CCGTA-GGCGT-G--TATCTGAA-AAAT----GG-GTCGCCCCGGTGG----TA-----GAA-----------ATTAGGT-CAATTTTAT--GAAA----------T-C-----TGAGCAGAGGATCA-ATCTGCTT-AGCC-TCGTATTATGGTGC-T-T---T----T-A---A--ATGGTA-TGTAGTATCATCAAGCACA-----CTATTTTCACATTTGAGAATTTTTCTTGTCTTAATTTTCACAAGATTGTGTGTCTT-GT-AATT-AGACAAATGAGAATAGTACATGTATTTGGAATTTAACTGT-CTTTCTC---C-GTAATGTAATCA------GCTGATTTTCGCATGATAACACACAGTCATATTGTTTTTATCGACTTTt
gi|13 : gatcTACTCGTAAGTATTTTTGTACAA-TATCCTTG-TCCT-CTGATGCAGT-CGGTTATCG------------------TTTA--GACTCC-----ATAGCAC-ATCCAGTGATCT---GTATGTAAATTTTTAAATTCAA--TT----------GAAATGTATTATATTCCAAAGTTAATCTCA-GGAA------AAAT-C---------A-T--ATA--------------TT-AAAT----GCA-TACATATAT-CTGTCCGATT-TA---CTATAGT-A--TATTTCTACTGCA----GTAAATGATTCTTCAAATTGT-ATGTTTTGTGTAAAAAGATGTTACACCATAG-CTG----------ACAGT-CGCTTTTT-GGTCTCAAGTACAATCAAACCCTCGATT-TTTGTAATAA-AATCTGAGCTATC-TCTAATGGAAGTataaattccga
gi|15 : -G--AGTCGA-TTT-GCACTG------TA---CAA-TTATC---ATG--CA-GTTT-C--ATTA--TT---------------------------GCGAG-CAGATCC-CC----CAAA---T----TTTTG---TTGCG----TTTA-T---ATGACACGATAGGTAGAACA-AAGAAAATGAC---GT--TGTC----TCTCTGC---ACGATGT-ACCAGTA----TT--TCAAAAGC-----TCTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTTTG-TG---ACAAAAC------CGAGGGG-CATAC--CC-TGTTTTT--------T--G---T-TA-------ACACCAGATAACAG-----TGGCTCGATCATATACTACTCAATTACTAGGTTATA-TGT
gi|16 : GA-AA-AAA-A----GGCTCCGAT-CA--GCCACGTACCTC-ACAATTCACTT----GACTC---T-ACA-CTAA--TT-A--GTGTTT-C-GCG-GT-------GTGA-T----ACGT--GA----TT--AT-GA---TAT-TGA-A--A-TGATTGA--TTGA----TT----A-ATT-----GA-T----T-T-TGTTTTTCT--GCATGCAAA---T--C--GCCTCA-TCA-G-G--AGTCTATTT--GCAGT--C----TA---C-AATTAT--T-ATG--CA-GTTT-T--ATTA--TT--TCACAA---------TTGAGGA--TGTGAG-CAAAT-CTCC----CAAAT--T----TTG-G---TTGCG----TTTA-T---ATGACACGATAGGTAGAACAAAgtgtaatttaccagatcatagatctttttctgtttgaa
gi|18 : cctgaacagtttcaaaccggctaaagtcttagtagagtgaaaga-AA-AAT-CT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAA-TAACTT----TATTC---T-GCA-C-----TTAA--GTGTTT-CGGCT-GA-------TTGA-T----A-----CAAGG-TT--AT-GG---TAT-TGA-A--T-TGATTGA-TTT-A----TC----A-A-TC----GA-TTGGAT-T-TTTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TTG-GCACT--T----TA---C-AATT-TT-T-ATG--CA-GTTT-C--ATTA--TT--TTACAA---------TCGAAGA--TGTAAG-CATATCCCCTAGGATAAAATTT----TTT-G---TTGCG----TTTA-T---ATGACACAATAGGTAGAATAG
gi|19 : agC--GCACTTAGTAAGAA-AAT-AT-ATG-CTTCGTT-CA--GCCACGTACTTCAACAA-TCACTT----GATTG---T-ACA-------TTAG--GTGTTT-TGGTG-GT-------GTGA-T----AC----GA--GGTT--GT-GA---TAT-TGA-A--C-TGATTCA-TTTGAGTTGTC----A-A-T-----CA-----AT-TGTTTTTTTCT--GCATGCAAA---T-AC--GCCTCA-TCA-G-A--AGTCTATTT--GCA
gi|2 : cattaacccccatccccacaatcacgcattttaacgcataatctgtttcctcacaatcaATCAC------T-ATAG-CCCTCTTTCGAAGGTTGGTTTT-GAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGTGTT-TTCTC--ATATG-----------TCGTATGGTTTCTCCTTTGATAAATCCCTAT-AAAACTG-AGGGACTGT-GTGCACTTTTTCG-ATCCAAATAT-TGGAAA-GTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCTAGGAT-TCGATTTGCTTCAAATCT--ACTT-CCTTGTACA-TTGTAGTGTCT-AAAAGTGCATTT-ATTCACCGAAATTTCA-TA-TGTGAATTTAAGCAATTGATGAGCAGAATT-CTTT-TCA-----AA--------GAATTTCTTTCTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAA--ATTGGTTTATAA-T-TCCTCGGTTAT-CTGATGTAGT-CTGATATCAC-ATACAGATGGGGAGCATTTC--GAC-CC-----ATAGCAC-ATCCAATGATCT---GTTCATAAACTTTTGAATTAAA--TTCAAAAATTCAAAAAA-TATTGTTTTCCAATATTAATCTGAGGAGATAGCTCAGAT-C-T----TTAA-TTGATGGTGTA---------TT-AATT----GCA-TAGACAGAT-TTGTCCGATT-TA---CTGTAG-TA--TGTTTGTACTGCAGTACGTAATTAATTCCTCAAACTGC-ATG-TTTGTGTAGAGTGATGTAACACCA-----------AT--AAACATT-CGC-TGTTAGGTCTCAAGT----------TCTCGATT-TTGGTG-TAA-AATCAAAGCTATC-CCTGATGAAAGTGCTTAATTTTTGCACTATAGGTGTCAG-AAAATAATCA-CATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCC------------T----GG-GTCG-CCCGCCGG-AAATACTGCCGAACTGCAGCAACCATTACGTTTGATTTCAT--GAAAAACGTCTAGGT-CAATTTTGGGCAGAAGATATAACCTGCCT-AGCC-TCGTATTATGGTGCTT-T---TGTTGT-AAGAA--ATAATA-TGTGGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGACTG-GT-AATT-AGACAGCTGAGAATAGTA-TTCCA--AGGCATTTAGCTGT-CGTTCTTCTTCTTTAATATAATCATATTTG---------CGCATAATAACG--CA--CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTT-GTGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATGCAA-GAAC------TTTAGC-A---CTGTGTTTTCGTGC-TAGG-TGAGCTT-TTTTGTTTAATGCTCTGCGTTTTATACGCAATGA-T-TAGCGT-CCGATCGAAACGCCTGGCCATTctttac
gi|20 : AT-TG-TCCAC---ATGCCATATTGCG--GGATT-GCT---AA-GAT-AT-ATGACTCCAGT-TA--GCCACATACCTCAACAA-TCACTT----TACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----AT----GAG-G-TT--AT-GC---TAT-TGA-A--A-TGATTG
gi|21 : atgtcatatttttcatgtGCAC-ATCCAATAATCTACAGTTCATAAATTTCTGAATTCAA----------------AAT-TGTTATTTCCCAAAATTAATCTTAGGAGAAAGCTT-GAC-CGTCATGTTAG-CGAATGGTGTGTTAGAACTGTT-AATT----GAA-TGGACAGATAGTATGCTATTCTAACGCTGTATTTA----TTTGCAgcagtgcttaaatcggcgattgatttctt
gi|22 : T-GAATT-C---TAAGAATTTCTTGAAATTAGTACATGTCCATCATTTGGGTT-TTT-TT-TTCTC--ATATG-----------GTATATGGTTTTATTTTCAATAAATCCCT-T-AAAATTG-ATGGATTAT-GCGT-----------TCCAAATAG-TGT-AATGTGTTTGCAA----GATGGA-----TTAAATATCCAGGAT-GCGAGCTGCCTCAAAtgagtccaaaatcaaat
gi|23 : AA---T----TT--G---TTGCAGT--TATA-TGACATGATA-GGTA----GAACAGA-GAAAACG--TCTGAAATTTG----TCTCT-CTGCAAGATGT-GCAAGTA----TA--TTAAAAGC-----TTTTGT-TTCA----T-TTTTCAAA--TT-CCAG---TGT-CATT-ATTA-A-TG---ACA
gi|24 : gcagtttcattatattaattacaatcATAACAGA-G--TAACTCGATCGTA-GTTA-TCAAGTACCA-CTTGTA-TGTTTTGATTGATTTCATAATCACTATTAGT-ATAGCCCCTCTTTCGAGGGTTGGTTTT-GAAAT-CG-CTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GCT
gi|25 : TCACCCGACAATTGATCT--GATTTGAGATTAAGCACA----TGTTCCCTATATACAATGTACAATCAATTTAGC-A---CAGTGTTTTCG----T-GG-CGAGC-TGTTTTGTGTAATGTTCTGCGTTTTGCAAGCAA
gi|26 : CCTTTAGTTAGTAAAAGGTAATTCTGTACATGATTGTACAATGTATATACGACGTGAGATTAAACACAACTGTGTTTTC----------GTAC------TTT-GCAAG--CTTTGTTT---TGT-T-AG-TTTGT-T-TTTTGTT
gi|27 : TTAAATACG----TACTCTCTGTATACAA-GGAC------GTCAGCAATATTTATGTTTTTGTACTT-TA-CAAGC-A-TTTTGTTTAATGTTCCACTTTTTA-ACACAAAGA-TATAACATCCCCATCAAA
gi|28 : G-A-GGATTTT-GAGCACTTTAGCA-ATCCAAATAT-T-GAAATGAGTTGTTGAGTTTAATGTATAGTTTTAAA-GTCCA
gi|29 : acagaattgcaTA-CTGGCTGATTTTTTTCCGTA-GGCCA-GCTTATCGGAG-AA-TTTATAC-ATCACCCCGATGA-AAATACGGGAGTATTGTAGCAACCACTGTGTTTGATTTAAT--GAAAtaaagttaacggtgtaaaatatatttcctt
gi|3 : actTGA-AG-AAT-AT-ATGGCTCCGATTCA--GCCACGTACCT--ACAA-TCACTT----GACCC---G-A-G-CTAA--TTAA--GTGTTT-CGGTG-GT-------GTGA-T----AT----GA--G-TT--AT-GA---TTT-TGA-A--AATGATTGAATTTGA----TT----C-A-TT----GA-T------T-TGTTTTTCT--GCATGCAAA---TTCC--GCCTCA-TCA-G-G--AGTCTA-TTTGGCAGT--C----TA---CAA-TTAT--T-ATGG-CA-GTTT-T--ATTA--TTGTTCAC-AG--------TGGAGGA--AGTGAG-CATATC-TCC----CAAT---T----TTC-G---TTGAG----T----TAATCTGACACGATA--TTAGATACAAGAA---G-TCCTAT--TTT-----TCTTT-CTGCAGGATGT-GCCAATA----TT--TCAAA-GC-----TTTAAT-TTTA----T-TTT-CGAAATTC-CCAG---GGT-TG-T-ATT-TG-TG---ACAAAAAA-----CGAAGGG-TATAC--CC-TGTTTTTTTGCTTTTT--G--TT-AACAT-C--ACA---GATAACAGA-G--TGGCTCGATCTAA-GTTA-TCA-GTAC-A-CTTGTAATGTTT-GATTGATTTC-TAATCAC------TTATAGCCCCTCTTTCGAAGGTTGG-TTTTGAAATGCGATTAAGAAATTTCTGAAAT----ACGTCTGCATT-----GCTTGTGT-TTCTTCTC--ATATG-----------TTGTATGGTTCCTCCTTTGATAAATCCCT-TAAAAACTG-AGGGATTGTAATGCACTTTTTTCGATCCAAA-ATATGGAAA-GTATTGGTAGGTTTGATGTAC-G--TTGAA-AT-CAGGAT-TCG-TTTGCTTCAAAGTCTAACTTCCCTTGTACACCTGTGGTGTCT-AAAATTG-ATTTCATTCACCGAAATTTCAGTA-TGTGAATTTAACAAATTGATGAGCAGAATTCCGCTAAAAGTG--AATAT-TCGTGGATTTCTTTTTCTTCA-CATGGAATATAATGAA
gi|30 : GT--TGTC----TCCTTG--GC--GATGT-GCCAGTA----TTAATCA----------TTTTAC-TT------T-TGCTAGAA--TT-CAAG---AAT-TG-T-ATATGG-TG---ACGAAAG------CAAAGAG-TATAT--CC--ATTTTg
gi|31 : -GAGATAGCTCAGAT-C-T----TTAA-TTGATGGTGT----------TTTAATT----GCA-TAGACGGAT-TTTTCCGATT-TA---CTGTAG-TA--TTTTTGTACTGCA----GTAATTAATTCC
gi|32 : --TTGGGAAGAAGATATAATCTGCCCGAGCC-TCATGCAATGTTGC-TATAGATG-TGT-AGA-C--ATTATA-TCTAATATTATCAAACAAACCCT-CTA
gi|35 : aagtCCA-CTTGTA-TGTTTTGATTGATTTCATAACCAC------T-ATAGGCCCTCTTTCAAAGGTTGG-TTT-
gi|36 : TCATATCTAAGAGTTTT-CTTGCATTAATTTT-ACACAAATTTGTGTCTT-GT-GATT-GGACAG
gi|39 : AATTGATGAGCAGAATT-CGTG-ATAGTG--AATAACTCATGAATTTCTTTTTCT
gi|4 : -AA-AAT-AT-ATGACTCCGAT-CA--GCCATGTACCTCA-TAA-TCACTT-------------------------TAA--GTGTTT-TGGCG-GT-------TTGA-T----AT----GA--GGTT--AT-GA---TAT-TGA-A--A-TCATTGA-TTTCA----TT----A-A-TCAATGGA-TTGGCT-T-TGTTTTTCT--GC
gi|4 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaag-----TTTTGC-TTTA----G-TTTTC-AA--TTACCAGCTGGGT-TG-T-ATTTTG-CG---ACCAAAA------CGAGGGG-TACAC--CC-TGTTTTT--TTTTTTTTTGCTTT-TA--TTA--ACATCAGATAACAGA-G--TGGGTCGATCGTA-GTTA-TCAA-TACCA-CTTCTA-TGTTTTGATTGATTTCATAATCAC------T-ATAGCCCCTCTTTCGAAGGTTGGTTTT-GAAAT-CG-ATAATAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGT-GT-TTTTC--ATATG-----------TCGTATGGCTTCTTCTTTGATAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgctttagttttcaattaccagctgggttgtattttgcgaccaaaacgaggggtacaccctgttttttttttttttgcttttattaacatcagataacagagtgggtcgatcgtagttatcaataccacttctatgttttgattgatttcataatcactatagcccctctttcgaaggttggttttgaaatcgataataatttcttgaaatacgtctgcattgcttgtgtttttcatatgtcgtatggcttcttctttgataaatacaa
gi|40 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaagaaaatatatgactccgatcagccatgtacctcataatcactttaagtgttttggcggtttgatatgaggttatgatattgaaatcattgatttcattaatcaatggattggctttgtttttctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCGAAT-TA---CTGTAGT-A--TGTTTGTACTGCT----ATAACTAATTCTTCAAACTGacaa
gi|41 : TGCAGCATGT-GCCGGTA----TC--TTAAAAAC-----TTTTAC-TTTA----T-TTTTCGA
gi|42 : tcttCCGCCGG-AAATACTGCCGAACTGCAGCAAC
gi|5 : A-AT-AAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAA-TCACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATA-TA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA---------ATTA-----------A---------T-GATGA--TTTGAG-CTTATTCTTA----AAAA---A----ATT-A---TTGCA----TTT--TGATAGGA----------AGATCCGAAAAAAAT-----TGT--CTTT----TCTCT-CTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGAA--TT-CCAG---GGG-TG-T-A-TATGATA---ACAAACA------CAAGAGG-TAT---------TTCCT--GTTATTT--GCTTT-T--ATTT--GCATCTGATAA---AAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGTA-TGTTTTGATTGATTTTATTATCTT------C-AAAATCTTTTTTTT----------TTT-TAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATATGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-
gi|6 : TCAAAT-TG-TATAT-----GT----T-GTCAGGAGTT----GA-AA-AAT-AT-ATGGTTCCCAC-CA--GCCATGTACCTCAACAA-TCACTTAATTGACTGATGT-ACA-CTAA--TTTA--GTGTTT-CAGCG-GT-------GTGA-T----AT----GA--GGTT--AT-GA---------------------------GA----TT----A---------GACT---AT-T-T-TTTCTCTATGCATGCAAA---T-CT--GCCTCA-TCG-G-G--TGTCTA-CT--------------TA---CAATTTATA-T-TTG-------TT-C--ATTA--TT--a
gi|7 : taaggtgaatgtaaggtcaaatatgataattgcgtgtttcaaatacttaattgttagcaattaatgcaactagttatgtccatctaattgttatcagttatgtagaaattcagttattaaatataactacacatcagctgctggagactgccattttgcaagaaaaaagtttctttgatatttcccacaataccatctggtgatgacgcatgggggggggggcatttggctctgtgtgacgagctttaattactagctgaagcttcaactggaaataccagtgatttacgattgattgaaaatgactgagggaatgataaaacttcatgcacttgtgacatttttgA-AATAAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAA-TCACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATA-TA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA----------TTA-----------A---------T-GATGA--TTTGAG-CTTATTCTTA----AAAA---T----T---A---TTGCA----TTT-------TGATA-GG-----AGATCCGAAAAAAAT-----TGTC-TTTC----TCTCTG--G-AGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGA---TT-CCAG---GGT--G-T-AT-ATGATA---ACAAACA------CAAGAGG-TAT---------TTCCT--GTTATTT--GCTTT-TA--TTT--GCATCTAA-----AAAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGTA-TGTTTTGATTGATTTTATTATCTT------C-AAAATCTTTTTTTT----------TTT-TAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATATGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-cttga
gi|8 : TTCAAAT-TG-TACAT---ATGTCAG--------GAGTTCG-----AA-AAT-AT-ATGGCTCCCAC-CA--GCCATGTACCTCAACAA-TCACTT----GATTC---T-ACA-CTAA--TTAA--GTGTAT-TAGCG-GT-------GTGA-T----A-----TA--A-TT--AC-GAGGTTAT-GGGTC--A-TGA--GA-TTTGA----TTTCTCA-A-TA----GA-CTG-AT-T-TTTTTCTCTCCGCATGCAAA---T-CT--GCCTCA-TCA-G-G--GTTTTA-T
gi|9 : ttttgttgtttttttttttagaaatcagctacacatcagctgttggaggctgccaatttgcaagaaaaagttatggctcttttttgtatttcccacaatgtcatctggtgatgacgcatcagaggcaactgcctctcagcggtgagcattaattattagctgcagcttcaactgaaaataccagtgatttgggatggattgatataaatgacagagaaaaataaaacttgatgcacttgtggacattgtgacattttTT-CAGCGAGT-------GTGACT----AATCGCGA--G-TTTCAT-AA---TGT--GA-G--A-TGATTGG-TTTGA----TT----A-T-T-----GA-T---TT-T-GGTTTTTCTG-GCATGC-AA---T-CCCAGCATCATTCA-GTGACAGTCTA-TT--GC-GT--C----TAAACCAAATTACT-TAATGCCCA-GTTTGCTAATTA---T--TCAC-AAAATTTTTGTAGAGGATGTGTGAG-CCAATACTTC----TTAA---T----TTG-G---TTGCGGGTTTATA-TGAACAGAT-CGGT---CAGAACAGAGAAAAGT--CTCT-T--TTTCCTGTTCTTTTCTGC-GGATGT-GCCAATAGTTTTT--TC---AGCCTTTTTTTTGC-TTTAAATGT-TTTTCGAA--TT-CCAG---GGT-TG-TAATTGTG-TGTGAACAAAAAACAAACTGAGCGG-TATAC--C-----TCTT--GTTTTTT--GCTTT-Tag
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTATCATTTTTATGGAAATCAGCTATCAAATATAGCTACACATCAGTTGCTGGAGTCTGCCATATTGCAAGATAAAGTTATCGCTCTTTTTGATATTTCCCACAATATCATCTGGTGATGACGTATACAGGGCAATTATCTCTGAGTGATGCATGATGAGCTTTAATTATTAGCTCCAGCGTCAACCAGTGATTTGGGATGGATTGATGAAAATAGGGAAAATGATGAATCTTTATGCACTTAAGGACAAAGTGACTTTCTTTCAAAGTTTGCATGTTGTTGTCATAATATAAATTTCGGGAAATATAGC
Unaligned ( gi|17 ): GAATATCACATTTGATTTAAAGGGAGCGCAAGGTCAAAAATGATAATTGGTCAATTCAAATACTGCGTTGGTAGCAATTAATTCCACTGGTTATTTTCATCTGATTGTTATCAGTTGTGTAGAAATCAGCTATTAAATACCGCTACACATCAGCTGCTGGAGGCTGCCATTTTGAAAGATGAGAGTTATCGCTCTTTTTGATATTTCCCACAATCCAATCTGTTGATGATGTACAAGAGTCAATTGCCTCTGAGTGAAAGCAGCTGATCATGTCTGACTGCAA
Unaligned ( gi|33 ): ATATGGCTACACATCAGCTGCTGGAGGCTGCCATTTTGCAAGATAAAGTTATCTCTCTTTTTGATATTTCCCATGATACCA
Unaligned ( gi|34 ): TAAACCCATCTGCTGATGATATACAAGGGGCAACTGCTTTCGAGTGAAAGCAGCTGGTCACGCCTGATGGCACCGCAAAG
Unaligned ( gi|37 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Unaligned ( gi|38 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Alignments
lowQualScore : 1 1 444444444444444444 2222222 1111111 3333333333333333 4444444444444444444444 11 55555555555555 1 2222 1111 22222222222222222222222 222222222222222222222 111 11 55555555555555555555555 4444444444444444444444 111111 1 1111111 2222222 222222 22222 111111 11 1111 11111 11 55555555555 111 22 1 22222 1 11 1 1 1 1 1 1 333333333 1 1 1 11 111 1 1 2222222222222 11 1 33333 1 111 666666666666666 11 22222222 4444444444 1111 111 1111111 22222 1 1 555555555555555 1 2 6666666666 1 1 1 1 1 1 1 1 11 1 1 333333333 11 33333 1 1 2222222222 3333333 1 1 1 1 1 1 1 1 1 5555555555555555 2222 1 1 1 1 33333 11 1111 222222 33333 1111 222 111 1
lowQualScore : 0 0 444444444444444444 3333333 2 2 2 5 33 3 2 6666 555 3 3 888 44 2 5 2222222 2 6666666666666666 33 5 555 2 2 5555 3 0 6666 5555555555555555555555 3 3 9 11 555 55555 3 3 6666 6 11111111111111 666 8 1 2222 77 33 0000 22222222222222222222222 0 777 3 99 000000000000000000000 000 00 55 0 88888888888888888888888 0 3333333333333333333333 3 4 8888 77777 99999 3 111111 55 4 777 4 4 4 4 2 777 4 3333333 4 1 4444444 999 4 66 4 444444 99 4 0 22222 3 5 5 1 3 5 5 5 444444 0 2 5 33 3 0 4 0000 22222 88 5 5 5 55 5 44444444444 1 1 999 999 0 5 0 11 77 0 8 0 5 0 22222 8 0 3 88 6 3 3 6 6 6 3 3 3 0 0 1 2 999999999 6 5 5 5 7 0 88 777 6 3 3 9999999999999 88 3 33333 0 2 777 222222222222222 11 1 1 0 88888888 88 3333333333 8 7777 8 8 8 6 111 7777777 33333 3 3 1 555555555555555 3 7 6 5555555555 3 7 3 3 2 5 1 5 2 0 33 0 0 666 3 0 666666666 2 0 8 0 8 2 22 55 0 33 7 33333 3 3 0 0 1 3333333333 4444444 1 0 7 2 0 0 3 3 7 0 1 0 0 0 6 3 7 1 7 3 6 3 7777777777777777 8888 5 5 1 1 5 3 33333 33 7777 0 1 8 1 333333 0 33333 0 0 8 0000 000 2 77 777 2
lowQualScore : . . .................. ....... . . . . .. . . .... ... . . ... .. . . ....... . ................ .. . ... . . .... . . .... ...................... . . . .. ... ..... . . .... . .............. ... . . .... .. .. .... ....................... . ... . .. ..................... ... .. .. . ....................... . ...................... . . .... ..... ..... . ...... .. . ... . . . . . ... . ....... . . ....... ... . .. . ...... .. . . ..... . . . . . . . . ...... . . . .. . . . .... ..... .. . . . .. . ........... . . ... ... . . . .. .. . . . . . ..... . . . .. . . . . . . . . . . . . . ......... . . . . . . .. ... . . . ............. .. . ..... . . ... ............... .. . . . ........ .. .......... . .... . . . . ... ....... ..... . . . ............... . . . .......... . . . . . . . . . . .. . . ... . . ......... . . . . . . .. .. . .. . ..... . . . . . .......... ....... . . . . . . . . . . . . . . . . . . . . . . ................ .... . . . . . . ..... .. .... . . . . ...... . ..... . . . .... ... . .. ... .
lowQualScore : 0 0 777777777777777777 3333333 9 9 9 7 99 2 9 1111 000 1 1 222 22 9 7 1111111 9 8888888888888888 99 7 000 9 9 2222 1 4 5555 8888888888888888888888 1 1 2 55 888 00000 3 3 2222 2 44444444444444 444 8 2 5555 99 66 7777 99999999999999999999999 5 555 6 22 666666666666666666666 000 33 55 8 00000000000000000000000 9 6666666666666666666666 2 0 5555 66666 11111 6 222222 55 0 000 0 0 0 9 0 000 0 6666666 4 9 6666666 444 5 99 3 000000 22 0 7 77777 0 7 7 4 0 0 0 0 444444 2 5 0 88 2 2 5 6666 55555 99 7 7 7 77 7 33333333333 7 0 333 666 4 7 8 66 00 8 0 8 4 8 44444 0 0 2 33 7 3 3 7 7 7 3 3 2 0 0 2 5 000000000 7 5 0 0 3 7 33 777 7 3 3 7777777777777 33 3 33333 0 5 555 222222222222222 00 0 4 8 88888888 66 0000000000 0 0000 0 0 2 7 777 7777777 00000 3 3 0 333333333333333 3 3 7 3333333333 3 3 3 3 0 5 0 5 0 0 22 0 0 000 0 2 555555555 5 8 0 6 2 5 88 22 2 88 3 44444 2 2 0 0 2 0000000000 2222222 2 0 0 5 0 2 2 2 0 0 0 0 0 0 7 3 3 0 3 3 7 3 7777777777777777 3333 5 5 0 0 5 3 33333 88 0000 8 4 0 0 000000 8 44444 8 8 0 6666 222 0 88 777 0
consensus : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAA-TCACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-A-T-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--T-T--TCACAA--------TCGAGGA--TGTGAG-CATATCCTCC----CA----------AA---TTTN-GTTGC--GTTTAT-----ATG-ACA---CGATAGGTAGAACAGAAGAAAATG-CTCTGT--TTTCT----CTCTCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTTAATTAACAT--CNGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAAAT----GG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
Reference ( family-1976 ) : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAA-TCACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-A-T-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--T-T--TCACAA--------TNGAGGA--TGTGAG-CATATCCTCC----CA----------AA---TTTN-GTTGC--GTTTAT---GAATG-ACA---CGGTA--TAGAACAGAAGAAAATG-CTCTGT--TTTCT----CTCTCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTTAATTCGCAT--CTGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAT------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA-T----GG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
gi|1 : TTCAAATCTGATACATTGCACATTAAAT-G----GAATTTAGTGA-AA-AAT-ATTATGGCCC--ATGCA--GCCACGCAC-TCACAAA-CCACTT----GACTC---T-ACAGCTAAGTTTAAAAGTGTTT-CGGCGTGTATCAGACGTGA-T----A-----GA--G-TT--AT-GA---TAT-TGG-A--A-TGATTGA-TTTGA----TT----A-A-T-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTGAC----TA---CAAATTATC-T-ATG--CACGTTT-T--ATTA--T-T---CATA---------TAGAGGA--AG-GAGACA-ATCCTCC----CA----------AA---TTTG-GTTGC--GTATATTCAGAA-G-ATA---TGAT---TA---CAGAAGCA-----TTTTAT--TTTC---------------AAT-T-GC-AACA----TT----AAAA-------TTATGCGTTTA----TGTTTTCGAA--TC-TCGC---GGT-TG-T-ATTATG-TG---AC-AAAA-------CGAAAGG-TA-AC--C----TTTTTGACTTCTTT--A--TACAGTCAAGAT--CTACTAGCAGAAG--TGGCTCGATC-TA-GTTA-TTCAATACCA--TTGT-AAGTTT-GATTG--TTCATAATCAC-TAT------AGCCTCTCTTTCGAAAGTTGGTTT-GAAAT-CG-TTAAGAATTTCTTGAAA-----ACGTCTGAATT-----GCTT-TGT-GT-TTCTC--AAAATG-----------TCATATGGTTTCTCCTTTGA-AAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAAGGTAT-GGTAGGTTTGATGTAC--TTTTGAA-ATCTAGGATATCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAAAGTGCATTTCATTCAC--GAATTTCA-TATTGTGAATTTAAGCAATTG-TGAGCAGAAAT-CGCT-ATAGTGAAAATA--CCATGAATTTCTTTTTCTTCACCATTGAATATAATGAA-CCATCATCACGATAACGCCGCACG-TACGTTATGCGATGTT-ACTTGGAA--ATTGGTTTATAAT-TTCCTCGGTTATCCTGATGTAGTCCTGATATCACAATACAGAT--GGAGCATTTCAGAAC-CCCATTAATAGCACAATC--ATGATCT---GTTTATAAACTTTTGAATTCAAATTC----------AAAAA-TATTGTTTTCCAAAAGTAATCTGAG-AGATAGCTCAGATGC-T----TTAATTTGATGGTAT----------TT-GTTTTAAGGCAGTAGACGGAT-TT-TCCGATT-TA---CTGTAGTTATTTATTTGTACTGC-----GTAATTAATTCCCAAAACTGCGATGTTT-GTGTAGAGTGATTTGACATCATAGTCTGACCAATTAAAACATTCCGC-GTT-AGTCTCAAGC---------TTCTCGATTATGGGTGATAAGAATCAGAGCTATCGCCTGATG-AAGTGCT-AATTTTTGCACTATATGTGTCAGAAAAATAAGCAACTTAGCTGACTGATCTTT--CCGTGTGGCGTCGCCTATCTGAGAAAT----GATGTCGCCCCGCCGGAAAATACTGCCGAAACGCAGCAACAATTAC--TTGATTTCATGAGAAAAACGTCTAGGTCCAA--TTGGGCAGAAGATATA-TCTGCCT-AGCCATCGTTTTATGGTGC-T-T---TG-TGTAAAG-AAGATAATACTGT-GTATCATCCAACACACCCTGCCATTTTCAT-TTTGAGAGTTTTTCTTG-ATTAATTTT-ACAAGATTTTGTGACTTGGTAAATTGGGACAGCTGAGAATA-TA-ATGTATTGGGAATT-AGCGGTACGTTCTCCTTC-TTAATATAATCA-ATTTGGCTAA-----GCATAATAACGCA----CATGTTGTTTTTATCGGCGTTCTTGATTATGATATCTTTGCATTTTCTTGGATCTATCAAAGACTGCCGTTCAGAATTACTTAAATTGTCGTGAATTTTTAACGTTTGCATAGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAA-TCCGCTATTTGTACGGGATGGATGAATCTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-TAAC------TTTAGC-A---CTGTGTTTTCGTGC-T-AGCCGAGCGT-TTTTGTTTAATGCTCTGCGTTTTCTACGCAAAGATT-TAGCGTTCCGATCGAAACGCCTAGCCATT
gi|10 : aacGA-AC-AATTAT-ATGGCTCCAAT-CTTTGCCATGTACTACA-CAA-TTACTT----GACTC---TGACA-CTA---TTAA--GTGTTTCCGGCA-GTC------GTGA-TATTGA-----GG--G-TT--AT-G----TATCTGA-ATGA-TCATTAA-TTTG---------------------GA-T----------TTTTTCT--GCAAGCGAAATTT-CT--ACCTCA-TCAGG-G--ATTCTA-TT--TGACTA-T----TA---C-AATTATCAG-GGG--CA-ATTT-CATATTACTT-T--TTACAA--------TCAAGGA--ATTGAA-C-TATCC-CC----CATATGTTCTTTAA---TTTT-GCT-C--TTTGAT---GTA----------GGTA---GGAACTGGGGGAAATA-ATCTG-------T----CTCTCTACAGGATGTGGCCAGTA----TT--TT-AAAGC-----TT-----------------------------CAG---GTTATG-T-AATTTGTTG---AC-AAAAA------CAAGGGGATATACAGCTGTGTTATTG--TTCTTT--g
gi|11 : AAAT-GTC--GAAT---GTAAGAA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTC-ACAA-TCACTT----GACTC---
gi|11 : acccagtaacgttttagacaatgcgtccaagattgttaacggACTCGTTGAGAA-AAT-AT-AGGGCTTCGAT-CA--GCCACGTACATCA-CAA-TCACTT----GACTC---T-ACA-CTAA--TTAA--CTCTTT-CGGCG-GT-------GTGA-TGC--A-----AG--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-A-TCAATCGA-TTG-ATGT-TGTTTTTCT--GCATGCAAA---T-CC--GCCCAA-TCA-G-G--AGTCTA-TT--TGAGGT-C----TA---C-AATTATC---ATG--CA-ATTT-C--ATTA--T-T--TTACAA--------TTGAGGA--TGTGAG-CATAT-CTCC----CA----------AA---TTTgttgagaaaatatagggcttcgatcagccacgtacatcacaatcacttgactctacactaattaactctttcggcggtgtgatgcaaggttatgatattgaaatgattgatttgattaatcaatcgattgatgttgtttttctgcatgcaaatccgcccaatcaggagtctatttgaggtctacaattatcatgcaatttcattattttacaattgaggatgtgagcatatctcccaaatttt
gi|12 : acccagtaacgttttagacaatgcgtccaagattgttaacggaaatgtcgaatgtaagaaaatatatggctccgatcagccacgtacctcacaatcacttgATAATCAGCATA-CTGACTGGTCTCTT-CCGTA-GGCGT-G--TATCTGAAAAAT----GG-GTCGCCCCGGTGG----TA-----GAA-----------ATTAGGT-CAATTTTATGA--AA----------TC------TGAGCAGAGGAT-CAATCTGCTT-AGCC-TCGTATTATGGTGC-T-T---T----TAA----A--TGGTA-TGTAGTATCATCAAGCACACT-----ATTTTCACATTTGAGAATTTTTCTTGTCTTAATTTTCACAAGATTGTGTGTCTTG-TAA-TTAG-ACAAATGAGAATAGTACATGTATTTGGAATTTAACTGT-CTTTCTC---C-GTAATGTAATCA------GCTGATTTTCGCATGATAACACACAGTCATATTGTTTTTATCGACTTTt
gi|13 : gatcTACTCGTAAGTATTTTTGTACAATAT-CCTTG-TCCTC-TGATGCAGTC-GGTTATCG------------------TTTAG--ACTCC-----ATAGCACA-TCCAGTGATCT---GTATGTAAATTTTTAAATTCAA--TT----------GAAATGTATTATATTCCAAAGTTAATCTCAGGAAAAA--TCATAT----------------AT----------------T-AAAT----GCA-TACATATAT-CTGTCCGATT-TA---CTATAGT-AT--ATTTCTACTGCA----GTAAATGATTCTTCAAATTGT-ATGTTTTGTGTAAAAAGATGTTACACCATAG-CTGA----------CAGTC-GCTTTTTGGTCTCAAGTACAATCAAACCCTCGATT-TTTGTAATAA-AATCTGAGCTATC-TCTAATGGAAGTataaattccga
gi|15 : -G--AGTCGA-TTT-GCACTG------TA---CAA-TTATC---ATG--CA-GTTT-C--ATTA--T-T--------------------------GCGAG-CAGATCC-CC----CA----------AA---TTTTTGTTGC--GTTTAT-----ATG-ACA---CGATAGGTAGAACA-AAGAAAATGACGTTGT-----------CTCTCTGCACGATGT-ACCAGTA----TT--TCAAAAGC-----TCTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTTTG-TG---AC-AAAAC------CGAGGGG-CATAC--CC-TGTTTTT--------T--G---TTAA----CAC--CAGATAACAG-----TGGCTCGATCATATACTACTCAATTACTAGGTTAT-ATGT
gi|16 : GA-AA-AAA-A----GGCTCCGAT-CA--GCCACGTACCTC-ACAATTCACTT----GACTC---T-ACA-CTAA--TT-A--GTGTTT-C-GCG-GT-------GTGA-T----ACGT--GA----TT--AT-GA---TAT-TGA-A--A-TGATTGA--TTGA----TT----A-ATT-----GA-T----T-T-TGTTTTTCT--GCATGCAAA---T--C--GCCTCA-TCA-G-G--AGTCTATTT--GCAGT--C----TA---C-AATTAT--T-ATG--CA-GTTT-T--ATTA--T-T--TCACAA--------TTGAGGA--TGTGAG-CAAAT-CTCC----CA----------AAT--TTTG-GTTGC--GTTTAT-----ATG-ACA---CGATAGGTAGAACAAAgtgtaatttaccagatcatagatctttttctgtttgaa
gi|18 : cctgaacagtttcaaaccggctaaagtcttagtagagtgaaaga-AA-AAT-CT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAA-TAACTT----TATTC---T-GCA-C-----TTAA--GTGTTT-CGGCT-GA-------TTGA-T----A-----CAAGG-TT--AT-GG---TAT-TGA-A--T-TGATTGA-TTT-A----TC----A-A-TC----GA-TTGGAT-T-TTTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TTG-GCACT--T----TA---C-AATT-TT-T-ATG--CA-GTTT-C--ATTA--T-T--TTACAA--------TCGAAGA--TGTAAG-CATATCCCCTAGGATA----------AAATTTTTT-GTTGC--GTTTAT-----ATG-ACA---CAATAGGTAGAATAG
gi|19 : agC--GCACTTAGTAAGAA-AAT-AT-ATG-CTTCGTT-CA--GCCACGTACTTCAACAA-TCACTT----GATTG---T-ACA-------TTAG--GTGTTT-TGGTG-GT-------GTGA-T----AC----GA--GGTT--GT-GA---TAT-TGA-A--C-TGATTCA-TTTGAGTTGTC----A-A-T-----CA-----AT-TGTTTTTTTCT--GCATGCAAA---T-AC--GCCTCA-TCA-G-A--AGTCTATTT--GCA
gi|2 : cattaacccccatccccacaatcacgcattttaacgcataatctgtttcctcacaatcaATCAC-TAT------AGCCC-TCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGTGTT-TTCTC--ATA-TG-----------TCGTATGGTTTCTCCTTTGATAAATCCCTAT-AAAACTG-AGGGACTGT-GTGCACTTTTTCG-ATCCAAATAT-TGGAAA-GTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCTAGGAT-TCGATTTGCTTCAAATCT--ACTT-CCTTGTACA-TTGTAGTGTCTAAAA-GTGCATTT-ATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CTTT-TCA---AA----------GAATTTCTTTCTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCACA-TACAGATGGGGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTAAA--TTCAAAAATTCAAAAAA-TATTGTTTTCCAATATTAATCTGAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGTA---------TT-AATT----GCA-TAGACAGAT-TTGTCCGATT-TA---CTGTAG-TAT--GTTTGTACTGCAGTACGTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTAACACCA-------AT------AAACATTC-GCTGTTAGGTCTCAAGT----------TCTCGATT-TTGGTG-TAA-AATCAAAGCTATC-CCTGATGAAAGTGCTTAATTTTTGCACTATAGGTGTCAG-AAAATAATCA-CATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCC-----------T----GG-GTCG-CCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTTGATTTCATGA--AAAACGTCTAGGTC-AATTTTGGGCAGAAGATATAACCTGCCT-AGCC-TCGTATTATGGTGCTT-T---TGTTGTAA-GAAA--TAATA-TGTGGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGACTGG-TAA-TTAG-ACAGCTGAGAATAGTA-TTCCA--AGGCATTTAGCTGT-CGTTCTTCTTCTTTAATATAATCATATTTG---------CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTT-GTGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATGCAA-GAAC------TTTAGC-A---CTGTGTTTTCGTGC-TAGG-TGAGCTT-TTTTGTTTAATGCTCTGCGTTTTATACGCAATGA-T-TAGCGT-CCGATCGAAACGCCTGGCCATTctttac
gi|20 : AT-TG-TCCAC---ATGCCATATTGCG--GGATT-GCT---AA-GAT-AT-ATGACTCCAGT-TA--GCCACATACCTCAACAA-TCACTT----TACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----AT----GAG-G-TT--AT-GC---TAT-TGA-A--A-TGATTG
gi|21 : atgtcatatttttcatgtGCACA-TCCAATAATCTACAGTTCATAAATTTCTGAATTCAA----------------AAT-TGTTATTTCCCAAAATTAATCTTAGGAGAAAGCTT-GAC-CGTCATGTTAGCG-AATGGTGTGTTAGAACTGTT-AATT----GAA-TGGACAGATAGTATGCTATTCTAACGCTGTATTTA----TTTGCAgcagtgcttaaatcggcgattgatttctt
gi|22 : TGAATT-C---TAAGAATTTCTTGAAATTAGTACATGTCCATCATTTGGGTT-TTT-TT-TTCTC--ATA-TG-----------GTATATGGTTTTATTTTCAATAAATCCCT-T-AAAATTG-ATGGATTAT-GCGT-----------TCCAAATAG-TGT-AATGTGTTTGCAA----GATGGA-----TTAAATATCCAGGAT-GCGAGCTGCCTCAAAtgagtccaaaatcaaat
gi|23 : G--CA-GTTT-C--ATTA--TAT--T---AA--------TTA-------------CA-ATC--------------------AA---TTT--GTTGC--AGTTAT-----ATG-ACA---TGATAGGTAGAACAGA-GAAAACG--TCTGAAATTTGT----CTCTCTGCAAGATGT-GCAAGTA----TA--TTAAAAGC-----TTTTGT-TTCA----T-TTTTCAAA--TT-CCAG---TGT-CATT-ATTA-A-TG---AC-A
gi|24 : ATAACAGA-G--TAACTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TATTAGTATAGCCCCTCTTTCGAGGGTTGGTTTTGAAAT-CG-CTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GCT
gi|25 : TCACCCGACAATTGATCT--GATTTGAGATTAAGCACA----TGTTCCCTATATACAATGTACAATCAATTTAGC-A---CAGTGTTTTCG----T-GG-CGAGC-TGTTTTGTGTAATGTTCTGCGTTTTGCAAGCAA
gi|26 : CCTTTAGTTAGTAAAAGGTAATTCTGTACATGATTGTACAATGTATATACGACGTGAGATTAAACACAACTGTGTTTTC----------GTAC------TTT-GCAAG--CTTTGTTT---TGT-T-AG-TTTGT-T-TTTTGTT
gi|27 : TTAAATACG----TACTCTCTGTATACAA-GGAC------GTCAGCAATATTTATGTTTTTGTACTT-TA-CAAGC-A-TTTTGTTTAATGTTCCACTTTTTA-ACACAAAGA-TATAACATCCCCATCAAA
gi|28 : G-A-GGATTTT-GAGCACTTTAGCA-ATCCAAATAT-T-GAAATGAGTTGTTGAGTTTAATGTATAGTTTTAAA-GTCCA
gi|29 : acagaattgcaTA-CTGGCTGATTTTTTTCCGTA-GGCCA-GCTTATCGGAGAA-TTTATAC-ATCACCCCGATGAAAA-TACGGGAGTATTGTAGCAACCACTGTGTTTGATTTAATGA--AAtaaagttaacggtgtaaaatatatttcctt
gi|3 : actTGA-AG-AAT-AT-ATGGCTCCGATTCA--GCCACGTACCT--ACAA-TCACTT----GACCC---G-A-G-CTAA--TTAA--GTGTTT-CGGTG-GT-------GTGA-T----AT----GA--G-TT--AT-GA---TTT-TGA-A--AATGATTGAATTTGA----TT----C-A-TT----GA-T------T-TGTTTTTCT--GCATGCAAA---TTCC--GCCTCA-TCA-G-G--AGTCTA-TTTGGCAGT--C----TA---CAA-TTAT--T-ATGG-CA-GTTT-T--ATTA--T-TGTTCACAG--------TGGAGGA--AGTGAG-CATATC-TCC----CA----------AT---TTTC-GTTGA--GTTAAT---C--TG-ACA---CGATA--TTAGATACAAGAA---G-TCCTAT--TTT-T----CTTTCTGCAGGATGT-GCCAATA----TT--TC-AAAGC-----TTTAAT-TTTA------TTTTCGAAATTC-CCAG---GGT-TG-T-ATT-TG-TG---ACAAAAAA------CGAAGGG-TATAC--CC-TGTTTT-------TTT--GCTTTTTGTTAACATCACAGATAACAG-AG--TGGCTCGATCTAA-GTTA-TC-AGTA-CA-CTTGTAATG-TTTGATTGATTTC-TAATCACTTAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAATGCGATTAAGAAATTTCTGAAAT----ACGTCTGCATT-----GCTTGTGT-TTCTTCTC--ATA-TG-----------TTGTATGGTTCCTCCTTTGATAAATCCCT-TAAAAACTG-AGGGATTGTAATGCACTTTTTTCGATCCAAA-ATATGGAAA-GTATTGGTAGGTTTGATGTAC-G--TTGAA-AT-CAGGAT-TCG-TTTGCTTCAAAGTCTAACTTCCCTTGTACACCTGTGGTGTCTAAAA-TTG-ATTTCATTCACCGAAATTTCAGTAT-GTGAATTTAACAAATTGATGAGCAGAATTCCGCTAAAAGTGAA--TAT-TCGTGGATTTCTTTTTCTTCA-CATGGAATATAATGAA
gi|30 : GT--TGTCT----C-CTTGGC--GATGT-GCCAGTA----TTAATCA----------TTTTAC-TT------T-TGCTAGAA--TT-CAAG---AAT-TG-T-ATATGG-TG---AC-GAAAG------CAAAGAG-TATAT--CC--ATTTTg
gi|31 : GAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TTTAATT----GCA-TAGACGGAT-TTTTCCGATT-TA---CTGTAG-TAT--TTTTGTACTGCA----GTAATTAATTCC
gi|32 : --TTGGGAAGAAGATATAATCTGCCCGAGCC-TCATGCAATGTTGC-TATAGATG-TGTAG-A-CA--TTATA-TCTAATATTATCAAACAAACCCT-CTA
gi|35 : aagtCCA-CTTGT-ATGTTTTGATTGATTTCATAACCAC-TAT------AGGCCCTCTTTCAAAGGTTGGTTT
gi|36 : TCATATCTAAGAGTTTT-CTTGCATTAATTTT-ACACAAATTTGTGTCTTG-TGA-TTGG-ACAG
gi|39 : AATTGATGAGCAGAATT-CGTG-ATAGTGAA--TAACTCATGAATTTCTTTTTCT
gi|4 : -AA-AAT-AT-ATGACTCCGAT-CA--GCCATGTACCTCA-TAA-TCACTT-------------------------TAA--GTGTTT-TGGCG-GT-------TTGA-T----AT----GA--GGTT--AT-GA---TAT-TGA-A--A-TCATTGA-TTTCA----TT----A-A-TCAATGGA-TTGGCT-T-TGTTTTTCT--GC
gi|4 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaag-----TTTTGC-TTTA----G-TTTTC-AA--TTACCAGCTGGGT-TG-T-ATTTTG-CG---AC-CAAAA------CGAGGGG-TACAC--CC-TGTTTTTT--TTTTTTTTGCTTTTA-TTAACAT--CAGATAACAGA-G--TGGGTCGATCGTA-GTTA-TCAA-TACCA-CTTCT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-ATAATAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGT-GT-TTTTC--ATA-TG-----------TCGTATGGCTTCTTCTTTGATAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgctttagttttcaattaccagctgggttgtattttgcgaccaaaacgaggggtacaccctgttttttttttttttgcttttattaacatcagataacagagtgggtcgatcgtagttatcaataccacttctatgttttgattgatttcataatcactatagcccctctttcgaaggttggttttgaaatcgataataatttcttgaaatacgtctgcattgcttgtgtttttcatatgtcgtatggcttcttctttgataaatacaa
gi|40 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaagaaaatatatgactccgatcagccatgtacctcataatcactttaagtgttttggcggtttgatatgaggttatgatattgaaatcattgatttcattaatcaatggattggctttgtttttctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCGAAT-TA---CTGTAGT-AT--GTTTGTACTGCT----ATAACTAATTCTTCAAACTGacaa
gi|41 : TCTTTGCAGCATGT-GCCGGTA----TC--TTAAAAAC-----TTTTAC-TTTA----T-TTTTCGA
gi|42 : CCGCCGGAAA-TACTGCCGAACTGCAGCAAC
gi|5 : A-AT-AAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAA-TCACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATA-TA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA-ATT--------------------AA--------T-GATGA--TTTGAG-CTTATTCTTA----AA----------AA---AATT-ATTGC--ATTT--------TG-ATA---GGA-----AGATCCGAAAAAAAT-----TGT--CTTTT----CTCTCTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGAA--TT-CCAG---GGG-TG-T-A-TATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTT-ATTTGCAT--CTGATAA---AAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT-CAA------AATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-
gi|6 : TCAAAT-TG-TATAT-----GT----T-GTCAGGAGTT----GA-AA-AAT-AT-ATGGTTCCCAC-CA--GCCATGTACCTCAACAA-TCACTTAATTGACTGATGT-ACA-CTAA--TTTA--GTGTTT-CAGCG-GT-------GTGA-T----AT----GA--GGTT--AT-GA---------------------------GA----TT----A---------GACT---AT-T-T-TTTCTCTATGCATGCAAA---T-CT--GCCTCA-TCG-G-G--TGTCTA-CT--------------TA---CAATTTATA-T-TTG-------TT-C--ATTA--T-T--a
gi|7 : taaggtgaatgtaaggtcaaatatgataattgcgtgtttcaaatacttaattgttagcaattaatgcaactagttatgtccatctaattgttatcagttatgtagaaattcagttattaaatataactacacatcagctgctggagactgccattttgcaagaaaaaagtttctttgatatttcccacaataccatctggtgatgacgcatgggggggggggcatttggctctgtgtgacgagctttaattactagctgaagcttcaactggaaataccagtgatttacgattgattgaaaatgactgagggaatgataaaacttcatgcacttgtgacatttttgA-AATAAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAA-TCACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATA-TA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA-----------------T--T---AA--------T-GATGA--TTTGAG-CTTATTCTTA----AA----------AA---TT---ATTGC--ATTT--------TG-ATA----GG-----AGATCCGAAAAAAAT-----TGT--CTT-T----CTCTCTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGA---TT-CCAG---GGT--G-T-AT-ATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTTA-TTTGCAT--CTAA-----AAAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT-CAA------AATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-cttga
gi|8 : TTCAAAT-TG-TACAT---ATGTCAG--------GAGTTCG-----AA-AAT-AT-ATGGCTCCCAC-CA--GCCATGTACCTCAACAA-TCACTT----GATTC---T-ACA-CTAA--TTAA--GTGTAT-TAGCG-GT-------GTGA-T----A-----TA--A-TT--AC-GAGGTTAT-GGGTC--A-TGA--GA-TTTGA----TTTCTCA-A-TA----GA-CTG-AT-T-TTTTTCTCTCCGCATGCAAA---T-CT--GCCTCA-TCA-G-G--GTTTTA-T
gi|9 : ttttgttgtttttttttttagaaatcagctacacatcagctgttggaggctgccaatttgcaagaaaaagttatggctcttttttgtatttcccacaatgtcatctggtgatgacgcatcagaggcaactgcctctcagcggtgagcattaattattagctgcagcttcaactgaaaataccagtgatttgggatggattgatataaatgacagagaaaaataaaacttgatgcacttgtggacattgtgacattttTT-CAGCGAGT-------GTGACT----AATCGCGA--G-TTTCAT-AA---TGT--GA-G--A-TGATTGG-TTTGA----TT----A-T-T-----GA-T---TT-T-GGTTTTTCTG-GCATGC-AA---T-CCCAGCATCATTCA-GTGACAGTCTA-TT--GC-GT--C----TAAACCAAATTACT-TAATGCCCA-GTTTGCTAATTA----T--TCACAAAATTTTTGTAGAGGATGTGTGAG-CCAATACTTC----TT----------AA---TTTG-GTTGCGGGTTTAT-----ATGAACAGATCGGT---CAGAACAGAGAAAAGT--CTCTTT--TTCCTGTTCTTTTCTGC-GGATGT-GCCAATAGTTTTT--TC---AGCCTTTTTTTTGC-TTTAAATGT-TTTTCGAA--TT-CCAG---GGT-TG-TAATTGTG-TGTGAAC-AAAAAACAAACTGAGCGG-TATAC--C-----TCTTG--TTTTTT--GCTTTTGAag
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTATCATTTTTATGGAAATCAGCTATCAAATATAGCTACACATCAGTTGCTGGAGTCTGCCATATTGCAAGATAAAGTTATCGCTCTTTTTGATATTTCCCACAATATCATCTGGTGATGACGTATACAGGGCAATTATCTCTGAGTGATGCATGATGAGCTTTAATTATTAGCTCCAGCGTCAACCAGTGATTTGGGATGGATTGATGAAAATAGGGAAAATGATGAATCTTTATGCACTTAAGGACAAAGTGACTTTCTTTCAAAGTTTGCATGTTGTTGTCATAATATAAATTTCGGGAAATATAGC
Unaligned ( gi|17 ): GAATATCACATTTGATTTAAAGGGAGCGCAAGGTCAAAAATGATAATTGGTCAATTCAAATACTGCGTTGGTAGCAATTAATTCCACTGGTTATTTTCATCTGATTGTTATCAGTTGTGTAGAAATCAGCTATTAAATACCGCTACACATCAGCTGCTGGAGGCTGCCATTTTGAAAGATGAGAGTTATCGCTCTTTTTGATATTTCCCACAATCCAATCTGTTGATGATGTACAAGAGTCAATTGCCTCTGAGTGAAAGCAGCTGATCATGTCTGACTGCAA
Unaligned ( gi|33 ): ATATGGCTACACATCAGCTGCTGGAGGCTGCCATTTTGCAAGATAAAGTTATCTCTCTTTTTGATATTTCCCATGATACCA
Unaligned ( gi|34 ): TAAACCCATCTGCTGATGATATACAAGGGGCAACTGCTTTCGAGTGAAAGCAGCTGGTCACGCCTGATGGCACCGCAAAG
Unaligned ( gi|37 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Unaligned ( gi|38 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Alignments
lowQualScore : 1 1 444444444444444444 2222222 1111111 3333333333333333 444444444444444444444 11 55555555555555 1 2222 1111 222222222222222222 1111111111111111 11 4444444444444444444444 111111 1 1111111 2222222 11 22222222 111111 11 1111 11111 11 55555555555 111 22 1 22222 1 11 1 1 1 1 1 1 333333333 1 1 1 11 111 1 1 2222222222222 11 1 33333 1 111 666666666666666 11 22222222 4444444444 1111 111 1111111 22222 1 1 1111 333333 1 2 6666666666 1 1 1 1 1 1 1 1 11 1 1 111 11 11 33333 1 1 2222222222 3333333 1 1 1 1 1 1 1 1 1 5555555555555555 2222 1 1 1 1 33333 11 1111 222222 33333 1111 222 111 1
lowQualScore : 0 0 444444444444444444 3333333 2 2 2 5 33 6 2 6666 555 3 3 888 44 2 5 2222222 2 6666666666666666 33 5 555 2 2 5555 3 4 6666 555555555555555555555 3 3 9 11 555 3 555 3 3 6666 3 44444444444444 666 4 5 2222 88 44 2222 55 444444444444444444 666 4 77 333 6666666666666666 666 00 4 55 666 77777 77 4 4 22 3333333333333333333333 3 4 8888 77777 99999 3 111111 55 4 777 4 4 4 4 2 777 4 3333333 4 1 4444444 0 66 4 66 4 66 1 99 7 00000000 3 5 5 1 3 5 5 5 444444 0 2 5 33 3 0 4 0000 22222 88 5 5 5 55 5 44444444444 1 1 999 999 0 5 0 11 77 0 8 0 5 0 22222 8 0 3 88 6 3 3 6 6 6 3 3 3 0 0 1 2 999999999 6 5 5 5 7 0 88 777 6 3 3 9999999999999 88 3 33333 0 2 777 222222222222222 11 1 1 0 88888888 88 3333333333 8 7777 8 8 8 6 111 7777777 33333 3 3 1 8888 888888 7 3 7 6 5555555555 3 7 3 3 2 5 1 5 2 0 33 0 0 666 3 0 777 00 2 0 8 0 8 2 22 55 0 33 7 33333 3 3 0 0 1 3333333333 4444444 1 0 7 2 0 0 3 3 7 0 1 0 0 0 6 3 7 1 7 3 6 3 7777777777777777 8888 5 5 1 1 5 3 33333 33 7777 0 1 8 1 333333 0 33333 0 0 8 0000 000 2 77 777 2
lowQualScore : . . .................. ....... . . . . .. . . .... ... . . ... .. . . ....... . ................ .. . ... . . .... . . .... ..................... . . . .. ... . ... . . .... . .............. ... . . .... .. .. .... .. .................. ... . .. ... ................ ... .. . .. ... ..... .. . . .. ...................... . . .... ..... ..... . ...... .. . ... . . . . . ... . ....... . . ....... . .. . .. . .. . .. . ........ . . . . . . . . ...... . . . .. . . . .... ..... .. . . . .. . ........... . . ... ... . . . .. .. . . . . . ..... . . . .. . . . . . . . . . . . . . ......... . . . . . . .. ... . . . ............. .. . ..... . . ... ............... .. . . . ........ .. .......... . .... . . . . ... ....... ..... . . . .... ...... . . . . .......... . . . . . . . . . . .. . . ... . . ... .. . . . . . . .. .. . .. . ..... . . . . . .......... ....... . . . . . . . . . . . . . . . . . . . . . . ................ .... . . . . . . ..... .. .... . . . . ...... . ..... . . . .... ... . .. ... .
lowQualScore : 0 0 777777777777777777 3333333 9 9 9 7 99 7 9 1111 000 1 1 222 22 9 7 1111111 9 8888888888888888 99 7 000 9 9 2222 1 2 5555 888888888888888888888 1 1 2 55 888 3 444 3 3 2222 1 88888888888888 444 4 6 5555 66 88 5555 00 666666666666666666 777 0 00 000 2222222222222222 444 33 0 55 111 77777 44 0 0 44 6666666666666666666666 2 0 5555 66666 11111 6 222222 55 0 000 0 0 0 9 0 000 0 6666666 4 9 6666666 1 99 5 99 3 77 7 22 5 77777777 0 7 7 4 0 0 0 0 444444 2 5 0 88 2 2 5 6666 55555 99 7 7 7 77 7 33333333333 7 0 333 666 4 7 8 66 00 8 0 8 4 8 44444 0 0 2 33 7 3 3 7 7 7 3 3 2 0 0 2 5 000000000 7 5 0 0 3 7 33 777 7 3 3 7777777777777 33 3 33333 0 5 555 222222222222222 00 0 4 8 88888888 66 0000000000 0 0000 0 0 2 7 777 7777777 00000 3 3 0 0000 333333 3 3 3 7 3333333333 3 3 3 3 0 5 0 5 0 0 22 0 0 000 0 2 555 22 5 8 0 6 2 5 88 22 2 88 3 44444 2 2 0 0 2 0000000000 2222222 2 0 0 5 0 2 2 2 0 0 0 0 0 0 7 3 3 0 3 3 7 3 7777777777777777 3333 5 5 0 0 5 3 33333 88 0000 8 4 0 0 000000 8 44444 8 8 0 6666 222 0 88 777 0
consensus : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCACAA--------TNGAGGA--TGTGAG-CATATCCTCC----CA----------AA---TTTT-G-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAATG-CTCTG--TTTTCT----CTCTCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTTAGTTAACAT--CAGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
Reference ( family-1976 ) : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCACAA--------TCGAGGA--TGTGAG-CATATCCTCC----CA----------AA---TTTN-G-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAATG-CTCTG--TTTTCT----CTCTCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTTAATTAACAT--CNGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
gi|1 : TTCAAATCTGATACATTGCACATTAAAT-G----GAATTTAGTGA-AA-AAT-ATTATGGCCC--ATGCA--GCCACGCAC-TCACAAAC-CACTT----GACTC---T-ACAGCTAAGTTTAAAAGTGTTT-CGGCGTGTATCAGACGTGA-T----A-----GA--G-TT--AT-GA---TAT-TGG-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTGAC----TA---CAAATTATC-T-ATG--CACGTTT-T--ATTA--TT---CATA---------TAGAGGA--AG-GAGACA-ATCCTCC----CA----------AA---TTTG-G-TTGC--GTATAT-TCAGAA-GATATG--A-TT-ACAGAAGCA-----TTTTA--TTTTC---------------AAT-T-GC-AACA----TT----AAAA-------TTATGCGTTTA----TGTTTTCGAA--TC-TCGC---GGT-TG-T-ATTATG-TG---AC-AAAA-------CGAAAGG-TA-AC--C----TTTTTGACTTCTTT--A--TACAGTCAAGAT--CTACTAGCAGAAG--TGGCTCGATC-TA-GTTA-TTCAATACCA--TTGT-AAGTTT-GATTG--TTCATAATCAC-TAT------AGCCTCTCTTTCGAAAGTTGGTTT-GAAAT-CG-TTAAGAATTTCTTGAAA-----ACGTCTGAATT-----GCTT-TGT-GT-TTCTC--AAAATG-----------TCATATGGTTTCTCCTTTGA-AAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAAGGTAT-GGTAGGTTTGATGTAC--TTTTGAA-ATCTAGGATATCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAAAGTGCATTTCATTCAC--GAATTTCA-TATTGTGAATTTAAGCAATTG-TGAGCAGAAAT-CGCT-ATAGTGAAAATA--CCATGAATTTCTTTTTCTTCACCATTGAATATAATGAA-CCATCATCACGATAACGCCGCACG-TACGTTATGCGATGTT-ACTTGGAA--ATTGGTTTATAAT-TTCCTCGGTTATCCTGATGTAGTCCTGATATCACAATACAGAT--GGAGCATTTCAGAAC-CCCATTAATAGCACAATC--ATGATCT---GTTTATAAACTTTTGAATTCAAATTC----------AAAAA-TATTGTTTTCCAAAAGTAATCTGAG-AGATAGCTCAGATGC-T----TTAATTTGATGGTAT----------TT-GTTTTAAGGCAGTAGACGGAT-TT-TCCGATT-TA---CTGTAGTTATTTATTTGTACTGC-----GTAATTAATTCCCAAAACTGCGATGTTT-GTGTAGAGTGATTTGACATCATAGTCTGACCAATTAAAACATTCCGC-GTT-AGTCTCAAGC---------TTCTCGATTATGGGTGATAAGAATCAGAGCTATCGCCTGATG-AAGTGCT-AATTTTTGCACTATATGTGTCAGAAAAATAAGCAACTTAGCTGACTGATCTTT--CCGTGTGGCGTCGCCTATCTGAGAA---ATGATGTCGCCCCGCCGGAAAATACTGCCGAAACGCAGCAACAATTAC--TTGATTTCATGAGAAAAACGTCTAGGTCCAA--TTGGGCAGAAGATATA-TCTGCCT-AGCCATCGTTTTATGGTGC-T-T---TG-TGTAAAG-AAGATAATACTGT-GTATCATCCAACACACCCTGCCATTTTCAT-TTTGAGAGTTTTTCTTG-ATTAATTTT-ACAAGATTTTGTGACTTGGTAAATTGGGACAGCTGAGAATA-TA-ATGTATTGGGAATT-AGCGGTACGTTCTCCTTC-TTAATATAATCA-ATTTGGCTAA-----GCATAATAACGCA----CATGTTGTTTTTATCGGCGTTCTTGATTATGATATCTTTGCATTTTCTTGGATCTATCAAAGACTGCCGTTCAGAATTACTTAAATTGTCGTGAATTTTTAACGTTTGCATAGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAA-TCCGCTATTTGTACGGGATGGATGAATCTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-TAAC------TTTAGC-A---CTGTGTTTTCGTGC-T-AGCCGAGCGT-TTTTGTTTAATGCTCTGCGTTTTCTACGCAAAGATT-TAGCGTTCCGATCGAAACGCCTAGCCATT
gi|10 : aacGA-AC-AATTAT-ATGGCTCCAAT-CTTTGCCATGTACTACA-CAAT-TACTT----GACTC---TGACA-CTA---TTAA--GTGTTTCCGGCA-GTC------GTGA-TATTGA-----GG--G-TT--AT-G----TATCTGA-ATGA-TCATTAA-TTTG--------------------GA-T----------TTTTTCT--GCAAGCGAAATTT-CT--ACCTCA-TCAGG-G--ATTCTA-TT--TGACTA-T----TA---C-AATTATCAG-GGG--CA-ATTT-CATATTACTTT--TTACAA--------TCAAGGA--ATTGAA-C-TATCC-CC----CATATGTTCTTTAA---TTTT-G-CT-C---TTTG-ATG-------TAGGT-AGGA-ACTGGGGGAAATA-ATCTG-------T----CTCTCTACAGGATGTGGCCAGTA----TT--TT-AAAGC-----TT-----------------------------CAG---GTTATG-T-AATTTGTTG---AC-AAAAA------CAAGGGGATATACAGCTGTGTTATTG--TTCTTT--g
gi|11 : AAAT-GTC--GAAT---GTAAGAA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTC-ACAAT-CACTT----GACTC---
gi|11 : acccagtaacgttttagacaatgcgtccaagattgttaacggACTCGTTGAGAA-AAT-AT-AGGGCTTCGAT-CA--GCCACGTACATCA-CAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--CTCTTT-CGGCG-GT-------GTGA-TGC--A-----AG--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-ATCAATCGA-TTG-ATGT-TGTTTTTCT--GCATGCAAA---T-CC--GCCCAA-TCA-G-G--AGTCTA-TT--TGAGGT-C----TA---C-AATTATC---ATG--CA-ATTT-C--ATTA--TT--TTACAA--------TTGAGGA--TGTGAG-CATAT-CTCC----CA----------AA---TTTgttgagaaaatatagggcttcgatcagccacgtacatcacaatcacttgactctacactaattaactctttcggcggtgtgatgcaaggttatgatattgaaatgattgatttgattaatcaatcgattgatgttgtttttctgcatgcaaatccgcccaatcaggagtctatttgaggtctacaattatcatgcaatttcattattttacaattgaggatgtgagcatatctcccaaatttt
gi|12 : acccagtaacgttttagacaatgcgtccaagattgttaacggaaatgtcgaatgtaagaaaatatatggctccgatcagccacgtacctcacaatcacttgATAATCAGCATA-CTGACTGGTCTCTT-CCGTA-GGCGT-G--TATCTGAAAA---ATGG-GTCGCCCCGGTGG----TA-----GAA-----------ATTAGGT-CAATTTTATGA--AA----------TC------TGAGCAGAGGAT-CAATCTGCTT-AGCC-TCGTATTATGGTGC-T-T---T----TAA----A--TGGTA-TGTAGTATCATCAAGCACACT-----ATTTTCACATTTGAGAATTTTTCTTGTCTTAATTTTCACAAGATTGTGTGTCTTG-TAA-TTAG-ACAAATGAGAATAGTACATGTATTTGGAATTTAACTGT-CTTTCTC---C-GTAATGTAATCA------GCTGATTTTCGCATGATAACACACAGTCATATTGTTTTTATCGACTTTt
gi|13 : gatcTACTCGTAAGTATTTTTGTACAATAT-CCTTG-TCCTC-TGATGCAGTC-GGTTATCG------------------TTTAG--ACTCC-----ATAGCACA-TCCAGTGATCT---GTATGTAAATTTTTAAATTCAA--TT----------GAAATGTATTATATTCCAAAGTTAATCTCAGGAAAAA--TCATAT----------------AT----------------T-AAAT----GCA-TACATATAT-CTGTCCGATT-TA---CTATAGT-AT--ATTTCTACTGCA----GTAAATGATTCTTCAAATTGT-ATGTTTTGTGTAAAAAGATGTTACACCATAG-CTGAC------AG----TC-GCTTTTTGGTCTCAAGTACAATCAAACCCTCGATT-TTTGTAATAA-AATCTGAGCTATC-TCTAATGGAAGTataaattccga
gi|15 : -G--AGTCGA-TTT-GCACTG------TA---CAA-TTATC---ATG--CA-GTTT-C--ATTA--TT--------------------------GCGAG-CAGATCC-CC----CA----------AA---TTTTTG-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACA-AAGAAAATGACGTTG--T---------CTCTCTGCACGATGT-ACCAGTA----TT--TCAAAAGC-----TCTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTTTG-TG---AC-AAAAC------CGAGGGG-CATAC--CC-TGTTT--------TTT--G-------TTAACAC--CAGATAAC---AG--TGGCTCGATCATATACTACTCAATTACTAGGTTAT-ATGT
gi|16 : GA-AA-AAA-A----GGCTCCGAT-CA--GCCACGTACCTCA-CAATTCACTT----GACTC---T-ACA-CTAA--TTA---GTGTTT-CG-CG-GT-------GTGA-T----ACGT--GA----TT--AT-GA---TAT-TGA-A--A-TGATTGA-TT-GA----TT----A-ATT----GA-T----T-T-TGTTTTTCT--GCATGCAAA---T-C---GCCTCA-TCA-G-G--AGTCTA-TTT-GCAGT--C----TA---CAA-TTAT--T-ATG--CA-GTTT-T--ATTA--TT--TCACAA--------TTGAGGA--TGTGAG-CAAATC-TCC----CA----------AA---TTTT-GGTTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAAAgtgtaatttaccagatcatagatctttttctgtttgaa
gi|18 : cctgaacagtttcaaaccggctaaagtcttagtagagtgaaaga-AA-AAT-CT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-AACTT----TATTC---T-GCA-C-----TTAA--GTGTTT-CGGCT-GA-------TTGA-T----A-----CAAGG-TT--AT-GG---TAT-TGA-A--T-TGATTGA-TTT-A----TC----A-ATC----GA-TTGGAT-T-TTTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TTG-GCACT--T----TA---C-AATT-TT-T-ATG--CA-GTTT-C--ATTA--TT--TTACAA--------TCGAAGA--TGTAAG-CATATCCCCTAGGATA----------AAATTTTTT-G-TTGC--GTTTATATGACAC-AATAGGT-A-GA-ATAG
gi|19 : agC--GCACTTAGTAAGAA-AAT-AT-ATG-CTTCGTT-CA--GCCACGTACTTCAACAAT-CACTT----GATTG---T-ACA-------TTAG--GTGTTT-TGGTG-GT-------GTGA-T----AC----GA--GGTT--GT-GA---TAT-TGA-A--C-TGATTCA-TTTGAGTTGTC----A-AT-----CA-----AT-TGTTTTTTTCT--GCATGCAAA---T-AC--GCCTCA-TCA-G-A--AGTCTATTT--GCA
gi|2 : cattaacccccatccccacaatcacgcattttaacgcataatctgtttcctcacaatcaATCAC-TAT------AGCCC-TCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGTGTT-TTCTC--ATA-TG-----------TCGTATGGTTTCTCCTTTGATAAATCCCTAT-AAAACTG-AGGGACTGT-GTGCACTTTTTCG-ATCCAAATAT-TGGAAA-GTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCTAGGAT-TCGATTTGCTTCAAATCT--ACTT-CCTTGTACA-TTGTAGTGTCTAAAA-GTGCATTT-ATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CTTT-TCA---AA----------GAATTTCTTTCTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCACA-TACAGATGGGGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTAAA--TTCAAAAATTCAAAAAA-TATTGTTTTCCAATATTAATCTGAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGTA---------TT-AATT----GCA-TAGACAGAT-TTGTCCGATT-TA---CTGTAG-TAT--GTTTGTACTGCAGTACGTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTAACACCA-------AT------AAACATTC-GCTGTTAGGTCTCAAGT----------TCTCGATT-TTGGTG-TAA-AATCAAAGCTATC-CCTGATGAAAGTGCTTAATTTTTGCACTATAGGTGTCAG-AAAATAATCA-CATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCC--------------TGG-GTCG-CCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTTGATTTCATGA--AAAACGTCTAGGTC-AATTTTGGGCAGAAGATATAACCTGCCT-AGCC-TCGTATTATGGTGCTT-T---TGTTGTAA-GAAA--TAATA-TGTGGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGACTGG-TAA-TTAG-ACAGCTGAGAATAGTA-TTCCA--AGGCATTTAGCTGT-CGTTCTTCTTCTTTAATATAATCATATTTG---------CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTT-GTGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATGCAA-GAAC------TTTAGC-A---CTGTGTTTTCGTGC-TAGG-TGAGCTT-TTTTGTTTAATGCTCTGCGTTTTATACGCAATGA-T-TAGCGT-CCGATCGAAACGCCTGGCCATTctttac
gi|20 : AT-TG-TCCAC---ATGCCATATTGCG--GGATT-GCT---AA-GAT-AT-ATGACTCCAGT-TA--GCCACATACCTCAACAAT-CACTT----TACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----AT----GAG-G-TT--AT-GC---TAT-TGA-A--A-TGATTG
gi|21 : atgtcatatttttcatgtGCACA-TCCAATAATCTACAGTTCATAAATTTCTGAATTCAA----------------AAT-TGTTATTTCCCAAAATTAATCTTAGGAGAAAGCTT-GAC-CGTCATGTTAGCG-AATGGTGTGTTAGAACTGTT-AATT----GAA-TGGACAGATAGTATGCTATTCTAACGCTGTATTTA----TTTGCAgcagtgcttaaatcggcgattgatttctt
gi|22 : TGAATT-C---TAAGAATTTCTTGAAATTAGTACATGTCCATCATTTGGGTT-TTT-TT-TTCTC--ATA-TG-----------GTATATGGTTTTATTTTCAATAAATCCCT-T-AAAATTG-ATGGATTAT-GCGT-----------TCCAAATAG-TGT-AATGTGTTTGCAA----GATGGA-----TTAAATATCCAGGAT-GCGAGCTGCCTCAAAtgagtccaaaatcaaat
gi|23 : ----------AA---TTT--G-TTGC--AGTTATATGACAT-GATAGGT-A-GA-ACAG-AGAAAACG--TCTGAAATTTGT----CTCTCTGCAAGATGT-GCAAGTA----TA--TTAAAAGC-----TTTTGT-TTCA----T-TTTTCAAA--TT-CCAG---TGT-CATT-ATTA-A-TG---AC-A
gi|24 : gcagtttcattatattaattacaatcATAACAGA-G--TAACTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TATTAGTATAGCCCCTCTTTCGAGGGTTGGTTTTGAAAT-CG-CTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GCT
gi|25 : TCACCCGACAATTGATCT--GATTTGAGATTAAGCACA----TGTTCCCTATATACAATGTACAATCAATTTAGC-A---CAGTGTTTTCG----T-GG-CGAGC-TGTTTTGTGTAATGTTCTGCGTTTTGCAAGCAA
gi|26 : CCTTTAGTTAGTAAAAGGTAATTCTGTACATGATTGTACAATGTATATACGACGTGAGATTAAACACAACTGTGTTTTC----------GTAC------TTT-GCAAG--CTTTGTTT---TGT-T-AG-TTTGT-T-TTTTGTT
gi|27 : TTAAATACG----TACTCTCTGTATACAA-GGAC------GTCAGCAATATTTATGTTTTTGTACTT-TA-CAAGC-A-TTTTGTTTAATGTTCCACTTTTTA-ACACAAAGA-TATAACATCCCCATCAAA
gi|28 : G-A-GGATTTT-GAGCACTTTAGCA-ATCCAAATAT-T-GAAATGAGTTGTTGAGTTTAATGTATAGTTTTAAA-GTCCA
gi|29 : acagaattgcaTA-CTGGCTGATTTTTTTCCGTA-GGCCA-GCTTATCGGAGAATTTATAC-ATCACCCCGATGAAAA-TACGGGAGTATTGTAGCAACCACTGTGTTTGATTTAATGA--AAtaaagttaacggtgtaaaatatatttcctt
gi|3 : actTGA-AG-AAT-AT-ATGGCTCCGATTCA--GCCACGTACCT--ACAAT-CACTT----GACCC---G-A-G-CTAA--TTAA--GTGTTT-CGGTG-GT-------GTGA-T----AT----GA--G-TT--AT-GA---TTT-TGA-A--AATGATTGAATTTGA----TT----C-ATT----GA-T------T-TGTTTTTCT--GCATGCAAA---TTCC--GCCTCA-TCA-G-G--AGTCTA-TTTGGCAGT--C----TA---CAA-TTAT--T-ATGG-CA-GTTT-T--ATTA--TTGTTCACAG--------TGGAGGA--AGTGAG-CATATC-TCC----CA----------AT---TTTC-G-TTGA--GTTAATCTGACAC-GATAT-T-A-GATACA--AGAA---G-TCCTA--TTTT-T----CTTTCTGCAGGATGT-GCCAATA----TT--TC-AAAGC-----TTTAAT-TTTA------TTTTCGAAATTC-CCAG---GGT-TG-T-ATT-TG-TG---ACAAAAAA------CGAAGGG-TATAC--CC-TGTTTT-------TTT--GCTTTTTGTTAACATCACAGATAACAG-AG--TGGCTCGATCTAA-GTTA-TC-AGTA-CA-CTTGTAATG-TTTGATTGATTTC-TAATCACTTAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAATGCGATTAAGAAATTTCTGAAAT----ACGTCTGCATT-----GCTTGTGT-TTCTTCTC--ATA-TG-----------TTGTATGGTTCCTCCTTTGATAAATCCCT-TAAAAACTG-AGGGATTGTAATGCACTTTTTTCGATCCAAA-ATATGGAAA-GTATTGGTAGGTTTGATGTAC-G--TTGAA-AT-CAGGAT-TCG-TTTGCTTCAAAGTCTAACTTCCCTTGTACACCTGTGGTGTCTAAAA-TTG-ATTTCATTCACCGAAATTTCAGTAT-GTGAATTTAACAAATTGATGAGCAGAATTCCGCTAAAAGTGAA--TAT-TCGTGGATTTCTTTTTCTTCA-CATGGAATATAATGAA
gi|30 : G--TTGTCT----C-CTTGGC--GATGT-GCCAGTA----TTAATCA----------TTTTAC-TT------T-TGCTAGAA--TT-CAAG---AAT-TG-T-ATATGG-TG---AC-GAAAG------CAAAGAG-TATAT--CC--ATTTTg
gi|31 : GAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TTTAATT----GCA-TAGACGGAT-TTTTCCGATT-TA---CTGTAG-TAT--TTTTGTACTGCA----GTAATTAATTCC
gi|32 : --TTGGGAAGAAGATATAATCTGCCCGAGCC-TCATGCAATGTTGC-TATAGATG-TGTAG-A-CA--TTATA-TCTAATATTATCAAACAAACCCT-CTA
gi|35 : aagtCCA-CTTGT-ATGTTTTGATTGATTTCATAACCAC-TAT------AGGCCCTCTTTCAAAGGTTGGTTT
gi|36 : TCATATCTAAGAGTTTT-CTTGCATTAATTTT-ACACAAATTTGTGTCTTG-TGA-TTGG-ACAG
gi|39 : AATTGATGAGCAGAATT-CGTG-ATAGTGAA--TAACTCATGAATTTCTTTTTCT
gi|4 : -AA-AAT-AT-ATGACTCCGAT-CA--GCCATGTACCTCA-TAAT-CACTT-------------------------TAA--GTGTTT-TGGCG-GT-------TTGA-T----AT----GA--GGTT--AT-GA---TAT-TGA-A--A-TCATTGA-TTTCA----TT----A-ATCAATGGA-TTGGCT-T-TGTTTTTCT--GC
gi|4 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaag-----TTTTGC-TTTA----G-TTTTC-AA--TTACCAGCTGGGT-TG-T-ATTTTG-CG---AC-CAAAA------CGAGGGG-TACAC--CC-TGTTTTTT--TTTTTTTTGCTTTTA-TTAACAT--CAGATAACAGA-G--TGGGTCGATCGTA-GTTA-TCAA-TACCA-CTTCT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-ATAATAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGT-GT-TTTTC--ATA-TG-----------TCGTATGGCTTCTTCTTTGATAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgctttagttttcaattaccagctgggttgtattttgcgaccaaaacgaggggtacaccctgttttttttttttttgcttttattaacatcagataacagagtgggtcgatcgtagttatcaataccacttctatgttttgattgatttcataatcactatagcccctctttcgaaggttggttttgaaatcgataataatttcttgaaatacgtctgcattgcttgtgtttttcatatgtcgtatggcttcttctttgataaatacaa
gi|40 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaagaaaatatatgactccgatcagccatgtacctcataatcactttaagtgttttggcggtttgatatgaggttatgatattgaaatcattgatttcattaatcaatggattggctttgtttttctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCGAAT-TA---CTGTAGT-AT--GTTTGTACTGCT----ATAACTAATTCTTCAAACTGacaa
gi|41 : TCTTTGCAGCATGT-GCCGGTA----TC--TTAAAAAC-----TTTTAC-TTTA----T-TTTTCGA
gi|42 : CCGCCGGAAA-TACTGCCGAACTGCAGCAAC
gi|5 : A-AT-AAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAAT-CACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATATA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA-ATT-------------------AA--------T-GATGA--TTTGAG-CTTATTCTTA----AA----------AA---AATT-A-TTGC--ATTT--------T-GATAGGA-A-GA-TCCGAAAAAAAT-----TG--TCTTTT----CTCTCTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGAA--TT-CCAG---GGG-TG-T-A-TATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTT-ATTTGCAT--CTGATAA---AAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT-CAA------AATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-
gi|6 : TCAAAT-TG-TATAT-----GT----T-GTCAGGAGTT----GA-AA-AAT-AT-ATGGTTCCCAC-CA--GCCATGTACCTCAACAAT-CACTTAATTGACTGATGT-ACA-CTAA--TTTA--GTGTTT-CAGCG-GT-------GTGA-T----AT----GA--GGTT--AT-GA---------------------------GA----TT----A--------GACT---AT-T-T-TTTCTCTATGCATGCAAA---T-CT--GCCTCA-TCG-G-G--TGTCTA-CT--------------TA---CAATTTATA-T-TTG-------TT-C--ATTA--TT--a
gi|7 : taaggtgaatgtaaggtcaaatatgataattgcgtgtttcaaatacttaattgttagcaattaatgcaactagttatgtccatctaattgttatcagttatgtagaaattcagttattaaatataactacacatcagctgctggagactgccattttgcaagaaaaaagtttctttgatatttcccacaataccatctggtgatgacgcatgggggggggggcatttggctctgtgtgacgagctttaattactagctgaagcttcaactggaaataccagtgatttacgattgattgaaaatgactgagggaatgataaaacttcatgcacttgtgacatttttgA-AATAAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAAT-CACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATATA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA----------------T--T---AA--------T-GATGA--TTTGAG-CTTATTCTTA----AA----------AA---TT---A-TTGC--ATTT--------T-GATAGG--A-GA-TCCGAAAAAAAT-----TG--TCTT-T----CTCTCTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGA---TT-CCAG---GGT--G-T-AT-ATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTTATTTG-CAT--C---TAA--AAAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT-CAA------AATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-cttga
gi|8 : TTCAAAT-TG-TACAT---ATGTCAG--------GAGTTCG-----AA-AAT-AT-ATGGCTCCCAC-CA--GCCATGTACCTCAACAAT-CACTT----GATTC---T-ACA-CTAA--TTAA--GTGTAT-TAGCG-GT-------GTGA-T----A-----TA--A-TT--AC-GAGGTTAT-GGGTC--A-TGA--GA-TTTGA----TTTCTCA-ATA----GA-CTG-AT-T-TTTTTCTCTCCGCATGCAAA---T-CT--GCCTCA-TCA-G-G--GTTTTA-T
gi|9 : ttttgttgtttttttttttagaaatcagctacacatcagctgttggaggctgccaatttgcaagaaaaagttatggctcttttttgtatttcccacaatgtcatctggtgatgacgcatcagaggcaactgcctctcagcggtgagcattaattattagctgcagcttcaactgaaaataccagtgatttgggatggattgatataaatgacagagaaaaataaaacttgatgcacttgtggacattgtgacattttTT-CAGCGAGT-------GTGACT----AATCGCGA--G-TTTCAT-AA---TGT--GA-G--A-TGATTGG-TTTGA----TT----A-TT-----GA-T---TT-T-GGTTTTTCTG-GCATGC-AA---T-CCCAGCATCATTCA-GTGACAGTCTA-TT--GC-GT--C----TAAACCAAATTACT-TAATGCCCA-GTTTGCTAATTA---T--TCACAAAATTTTTGTAGAGGATGTGTGAG-CCAATACTTC----TT----------AA---TTTG-G-TTGCGGGTTTATATGA-ACAGATCGGTCA-GA-ACAGAGAAAAGT--CTCTT--TTTCCTGTTCTTTTCTGC-GGATGT-GCCAATAGTTTTT--TC---AGCCTTTTTTTTGC-TTTAAATGT-TTTTCGAA--TT-CCAG---GGT-TG-TAATTGTG-TGTGAAC-AAAAAACAAACTGAGCGG-TATAC--C-----TCTTG--TTTTTT--GCTTTTGAag
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTATCATTTTTATGGAAATCAGCTATCAAATATAGCTACACATCAGTTGCTGGAGTCTGCCATATTGCAAGATAAAGTTATCGCTCTTTTTGATATTTCCCACAATATCATCTGGTGATGACGTATACAGGGCAATTATCTCTGAGTGATGCATGATGAGCTTTAATTATTAGCTCCAGCGTCAACCAGTGATTTGGGATGGATTGATGAAAATAGGGAAAATGATGAATCTTTATGCACTTAAGGACAAAGTGACTTTCTTTCAAAGTTTGCATGTTGTTGTCATAATATAAATTTCGGGAAATATAGC
Unaligned ( gi|17 ): GAATATCACATTTGATTTAAAGGGAGCGCAAGGTCAAAAATGATAATTGGTCAATTCAAATACTGCGTTGGTAGCAATTAATTCCACTGGTTATTTTCATCTGATTGTTATCAGTTGTGTAGAAATCAGCTATTAAATACCGCTACACATCAGCTGCTGGAGGCTGCCATTTTGAAAGATGAGAGTTATCGCTCTTTTTGATATTTCCCACAATCCAATCTGTTGATGATGTACAAGAGTCAATTGCCTCTGAGTGAAAGCAGCTGATCATGTCTGACTGCAA
Unaligned ( gi|33 ): ATATGGCTACACATCAGCTGCTGGAGGCTGCCATTTTGCAAGATAAAGTTATCTCTCTTTTTGATATTTCCCATGATACCA
Unaligned ( gi|34 ): TAAACCCATCTGCTGATGATATACAAGGGGCAACTGCTTTCGAGTGAAAGCAGCTGGTCACGCCTGATGGCACCGCAAAG
Unaligned ( gi|37 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Unaligned ( gi|38 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Alignments
lowQualScore : 1 1 444444444444444444 2222222 1111111 3333333333333333 444444444444444444444 11 55555555555555 1 2222 1111 222222222222222222 1111111111111111 4444444444444444444444 111111 1 1111111 2222222 22222222 111111 11 1111 11111 11 55555555555 111 22 1 22222 1 11 1 1 1 1 1 1 333333333 1 1 1 11 111 1 1 2222222222222 11 1 33333 1 111 666666666666666 11 22222222 4444444444 1111 111 1111111 22222 1 1 1111 333333 1 2 6666666666 1 1 1 1 1 1 1 1 11 1 1 111 11 11 33333 1 1 2222222222 3333333 1 1 1 1 1 1 1 1 1 5555555555555555 2222 1 1 1 1 33333 11 1111 222222 33333 1111 222 111 1
lowQualScore : 0 0 444444444444444444 3333333 2 2 2 5 33 6 2 6666 555 3 3 888 44 2 5 2222222 2 6666666666666666 33 5 555 2 2 5555 3 4 6666 555555555555555555555 3 3 9 11 555 3 555 3 3 6666 3 44444444444444 666 4 5 2222 88 44 2222 55 111111111111111111 666 4 77 333 7777777777777777 777 3 4 55 666 77777 77 4 4 22 3333333333333333333333 3 4 8888 77777 99999 3 111111 55 4 777 4 4 4 4 2 777 4 3333333 4 1 4444444 999 44 66 0 888 33 99 7 00000000 3 5 5 1 3 5 5 5 444444 0 2 5 33 3 0 4 0000 22222 88 5 5 5 55 5 44444444444 1 1 999 999 0 5 0 11 77 0 8 0 5 0 22222 8 0 3 88 6 3 3 6 6 6 3 3 3 0 0 1 2 999999999 6 5 5 5 7 0 88 777 6 3 3 9999999999999 88 3 33333 0 2 777 222222222222222 11 1 1 0 88888888 88 3333333333 8 7777 8 8 8 6 111 7777777 33333 3 3 1 8888 888888 7 3 7 6 5555555555 3 7 3 3 2 5 1 5 2 0 33 0 0 666 3 0 777 00 2 0 8 0 8 2 22 55 0 33 7 33333 3 3 0 0 1 3333333333 4444444 1 0 7 2 0 0 3 3 7 0 1 0 0 0 6 3 7 1 7 3 6 3 7777777777777777 8888 5 5 1 1 5 3 33333 33 7777 0 1 8 1 333333 0 33333 0 0 8 0000 000 2 77 777 2
lowQualScore : . . .................. ....... . . . . .. . . .... ... . . ... .. . . ....... . ................ .. . ... . . .... . . .... ..................... . . . .. ... . ... . . .... . .............. ... . . .... .. .. .... .. .................. ... . .. ... ................ ... . . .. ... ..... .. . . .. ...................... . . .... ..... ..... . ...... .. . ... . . . . . ... . ....... . . ....... ... .. .. . ... .. .. . ........ . . . . . . . . ...... . . . .. . . . .... ..... .. . . . .. . ........... . . ... ... . . . .. .. . . . . . ..... . . . .. . . . . . . . . . . . . . ......... . . . . . . .. ... . . . ............. .. . ..... . . ... ............... .. . . . ........ .. .......... . .... . . . . ... ....... ..... . . . .... ...... . . . . .......... . . . . . . . . . . .. . . ... . . ... .. . . . . . . .. .. . .. . ..... . . . . . .......... ....... . . . . . . . . . . . . . . . . . . . . . . ................ .... . . . . . . ..... .. .... . . . . ...... . ..... . . . .... ... . .. ... .
lowQualScore : 0 0 777777777777777777 3333333 9 9 9 7 99 7 9 1111 000 1 1 222 22 9 7 1111111 9 8888888888888888 99 7 000 9 9 2222 1 2 5555 888888888888888888888 1 1 2 55 888 3 444 3 3 2222 1 88888888888888 444 4 6 5555 66 88 5555 00 666666666666666666 777 0 00 000 8888888888888888 000 6 0 55 111 77777 44 0 0 44 6666666666666666666666 2 0 5555 66666 11111 6 222222 55 0 000 0 0 0 9 0 000 0 6666666 4 9 6666666 444 66 99 7 111 77 22 8 77777777 0 7 7 4 0 0 0 0 444444 2 5 0 88 2 2 5 6666 55555 99 7 7 7 77 7 33333333333 7 0 333 666 4 7 8 66 00 8 0 8 4 8 44444 0 0 2 33 7 3 3 7 7 7 3 3 2 0 0 2 5 000000000 7 5 0 0 3 7 33 777 7 3 3 7777777777777 33 3 33333 0 5 555 222222222222222 00 0 4 8 88888888 66 0000000000 0 0000 0 0 2 7 777 7777777 00000 3 3 0 0000 333333 3 3 3 7 3333333333 3 3 3 3 0 5 0 5 0 0 22 0 0 000 0 2 555 22 5 8 0 6 2 5 88 22 2 88 3 44444 2 2 0 0 2 0000000000 2222222 2 0 0 5 0 2 2 2 0 0 0 0 0 0 7 3 3 0 3 3 7 3 7777777777777777 3333 5 5 0 0 5 3 33333 88 0000 8 4 0 0 000000 8 44444 8 8 0 6666 222 0 88 777 0
consensus : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCACAA--------TNGAGGA--TGTGAG-CATATCCTCC----CA----------AA---TTTT-G-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAATG-CTCTG--TTTTCT----CTCTCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTT-AGTTAACAT--CAGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
Reference ( family-1976 ) : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCACAA--------TNGAGGA--TGTGAG-CATATCCTCC----CA----------AA---TTTT-G-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAATG-CTCTG--TTTTCT----CTCTCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTT-AGTTAACAT--CAGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
gi|1 : TTCAAATCTGATACATTGCACATTAAAT-G----GAATTTAGTGA-AA-AAT-ATTATGGCCC--ATGCA--GCCACGCAC-TCACAAAC-CACTT----GACTC---T-ACAGCTAAGTTTAAAAGTGTTT-CGGCGTGTATCAGACGTGA-T----A-----GA--G-TT--AT-GA---TAT-TGG-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTGAC----TA---CAAATTATC-T-ATG--CACGTTT-T--ATTA--TT---CATA---------TAGAGGA--AG-GAGACA-ATCCTCC----CA----------AA---TTTG-G-TTGC--GTATAT-TCAGAA-GATATG--A-TT-ACAGAAGCA-----TTTTA--TTTTC---------------AAT-T-GC-AACA----TT----AAAA-------TTATGCGTTTA----TGTTTTCGAA--TC-TCGC---GGT-TG-T-ATTATG-TG---AC-AAAA-------CGAAAGG-TA-AC--C----TTTTTGACTTCTTT--A--TAC-AGTCAAGAT--CTACTAGCAGAAG--TGGCTCGATC-TA-GTTA-TTCAATACCA--TTGT-AAGTTT-GATTG--TTCATAATCAC-TAT------AGCCTCTCTTTCGAAAGTTGGTTT-GAAAT-CG-TTAAGAATTTCTTGAAA-----ACGTCTGAATT-----GCTT-TGT-GT-TTCTC--AAAATG-----------TCATATGGTTTCTCCTTTGA-AAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAAGGTAT-GGTAGGTTTGATGTAC--TTTTGAA-ATCTAGGATATCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAAAGTGCATTTCATTCAC--GAATTTCA-TATTGTGAATTTAAGCAATTG-TGAGCAGAAAT-CGCT-ATAGTGAAAATA--CCATGAATTTCTTTTTCTTCACCATTGAATATAATGAA-CCATCATCACGATAACGCCGCACG-TACGTTATGCGATGTT-ACTTGGAA--ATTGGTTTATAAT-TTCCTCGGTTATCCTGATGTAGTCCTGATATCACAATACAGAT--GGAGCATTTCAGAAC-CCCATTAATAGCACAATC--ATGATCT---GTTTATAAACTTTTGAATTCAAATTC----------AAAAA-TATTGTTTTCCAAAAGTAATCTGAG-AGATAGCTCAGATGC-T----TTAATTTGATGGTAT----------TT-GTTTTAAGGCAGTAGACGGAT-TT-TCCGATT-TA---CTGTAGTTATTTATTTGTACTGC-----GTAATTAATTCCCAAAACTGCGATGTTT-GTGTAGAGTGATTTGACATCATAGTCTGACCAATTAAAACATTCCGC-GTT-AGTCTCAAGC---------TTCTCGATTATGGGTGATAAGAATCAGAGCTATCGCCTGATG-AAGTGCT-AATTTTTGCACTATATGTGTCAGAAAAATAAGCAACTTAGCTGACTGATCTTT--CCGTGTGGCGTCGCCTATCTGAGAA---ATGATGTCGCCCCGCCGGAAAATACTGCCGAAACGCAGCAACAATTAC--TTGATTTCATGAGAAAAACGTCTAGGTCCAA--TTGGGCAGAAGATATA-TCTGCCT-AGCCATCGTTTTATGGTGC-T-T---TG-TGTAAAG-AAGATAATACTGT-GTATCATCCAACACACCCTGCCATTTTCAT-TTTGAGAGTTTTTCTTG-ATTAATTTT-ACAAGATTTTGTGACTTGGTAAATTGGGACAGCTGAGAATA-TA-ATGTATTGGGAATT-AGCGGTACGTTCTCCTTC-TTAATATAATCA-ATTTGGCTAA-----GCATAATAACGCA----CATGTTGTTTTTATCGGCGTTCTTGATTATGATATCTTTGCATTTTCTTGGATCTATCAAAGACTGCCGTTCAGAATTACTTAAATTGTCGTGAATTTTTAACGTTTGCATAGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAA-TCCGCTATTTGTACGGGATGGATGAATCTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-TAAC------TTTAGC-A---CTGTGTTTTCGTGC-T-AGCCGAGCGT-TTTTGTTTAATGCTCTGCGTTTTCTACGCAAAGATT-TAGCGTTCCGATCGAAACGCCTAGCCATT
gi|10 : aacGA-AC-AATTAT-ATGGCTCCAAT-CTTTGCCATGTACTACA-CAAT-TACTT----GACTC---TGACA-CTA---TTAA--GTGTTTCCGGCA-GTC------GTGA-TATTGA-----GG--G-TT--AT-G----TATCTGA-ATGA-TCATTAA-TTTG--------------------GA-T----------TTTTTCT--GCAAGCGAAATTT-CT--ACCTCA-TCAGG-G--ATTCTA-TT--TGACTA-T----TA---C-AATTATCAG-GGG--CA-ATTT-CATATTACTTT--TTACAA--------TCAAGGA--ATTGAA-C-TATCC-CC----CATATGTTCTTTAA---TTTT-G-CT-C---TTTG-ATG-------TAGGT-AGGA-ACTGGGGGAAATA-ATCTG-------T----CTCTCTACAGGATGTGGCCAGTA----TT--TT-AAAGC-----TT-----------------------------CAG---GTTATG-T-AATTTGTTG---AC-AAAAA------CAAGGGGATATACAGCTGTGTTATTG--TTCTTT--g
gi|11 : AAAT-GTC--GAAT---GTAAGAA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTC-ACAAT-CACTT----GACTC---
gi|11 : acccagtaacgttttagacaatgcgtccaagattgttaacggACTCGTTGAGAA-AAT-AT-AGGGCTTCGAT-CA--GCCACGTACATCA-CAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--CTCTTT-CGGCG-GT-------GTGA-TGC--A-----AG--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-ATCAATCGA-TTG-ATGT-TGTTTTTCT--GCATGCAAA---T-CC--GCCCAA-TCA-G-G--AGTCTA-TT--TGAGGT-C----TA---C-AATTATC---ATG--CA-ATTT-C--ATTA--TT--TTACAA--------TTGAGGA--TGTGAG-CATAT-CTCC----CA----------AA---TTTT-gttgagaaaatatagggcttcgatcagccacgtacatcacaatcacttgactctacactaattaactctttcggcggtgtgatgcaaggttatgatattgaaatgattgatttgattaatcaatcgattgatgttgtttttctgcatgcaaatccgcccaatcaggagtctatttgaggtctacaattatcatgcaatttcattattttacaattgaggatgtgagcatatctcccaaatttt
gi|12 : acccagtaacgttttagacaatgcgtccaagattgttaacggaaatgtcgaatgtaagaaaatatatggctccgatcagccacgtacctcacaatcacttgATAATCAGCATA-CTGACTGGTCTCTT-CCGTA-GGCGT-G--TATCTGAAAA---ATGG-GTCGCCCCGGTGG----TA-----GAA-----------ATTAGGT-CAATTTTATGA--AA----------TC------TGAGCAGAGGAT-CAATCTGCTT-AGCC-TCGTATTATGGTGC-T-T---T----TAA----A--TGGTA-TGTAGTATCATCAAGCACACT-----ATTTTCACATTTGAGAATTTTTCTTGTCTTAATTTTCACAAGATTGTGTGTCTTG-TAA-TTAG-ACAAATGAGAATAGTACATGTATTTGGAATTTAACTGT-CTTTCTC---C-GTAATGTAATCA------GCTGATTTTCGCATGATAACACACAGTCATATTGTTTTTATCGACTTT
gi|13 : gatcTACTCGTAAGTATTTTTGTACAATAT-CCTTG-TCCTC-TGATGCAGTC-GGTTATCG------------------TTTAG--ACTCC-----ATAGCACA-TCCAGTGATCT---GTATGTAAATTTTTAAATTCAA--TT----------GAAATGTATTATATTCCAAAGTTAATCTCAGGAAAAA--TCATAT----------------AT----------------T-AAAT----GCA-TACATATAT-CTGTCCGATT-TA---CTATAGT-AT--ATTTCTACTGCA----GTAAATGATTCTTCAAATTGT-ATGTTTTGTGTAAAAAGATGTTACACCATAG-CTGAC------AG----TC-GCTTTTTGGTCTCAAGTACAATCAAACCCTCGATT-TTTGTAATAA-AATCTGAGCTATC-TCTAATGGAAGTataaattccga
gi|15 : -G--AGTCGA-TTT-GCACTG------TA---CAA-TTATC---ATG--CA-GTTT-C--ATTA--TT--------------------------GCGAG-CAGATCC-CC----CA----------AA---TTTTTG-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACA-AAGAAAATGACGTTG--T---------CTCTCTGCACGATGT-ACCAGTA----TT--TCAAAAGC-----TCTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTTTG-TG---AC-AAAAC------CGAGGGG-CATAC--CC-TGTTTTT---T---------------GTTAACAC--CAGATAAC---AG--TGGCTCGATCATATACTACTCAATTACTAGGTTAT-ATGT
gi|16 : GA-AA-AAA-A----GGCTCCGAT-CA--GCCACGTACCTCA-CAATTCACTT----GACTC---T-ACA-CTAA--TTA---GTGTTT-CG-CG-GT-------GTGA-T----ACGT--GA----TT--AT-GA---TAT-TGA-A--A-TGATTGA-TT-GA----TT----A-ATT----GA-T----T-T-TGTTTTTCT--GCATGCAAA---T-C---GCCTCA-TCA-G-G--AGTCTA-TTT-GCAGT--C----TA---CAA-TTAT--T-ATG--CA-GTTT-T--ATTA--TT--TCACAA--------TTGAGGA--TGTGAG-CAAATC-TCC----CA----------AA---TTTT-GGTTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAAAgtgtaatttaccagatcatagatctttttctgtttgaa
gi|18 : cctgaacagtttcaaaccggctaaagtcttagtagagtgaaaga-AA-AAT-CT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-AACTT----TATTC---T-GCA-C-----TTAA--GTGTTT-CGGCT-GA-------TTGA-T----A-----CAAGG-TT--AT-GG---TAT-TGA-A--T-TGATTGA-TTT-A----TC----A-ATC----GA-TTGGAT-T-TTTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TTG-GCACT--T----TA---C-AATT-TT-T-ATG--CA-GTTT-C--ATTA--TT--TTACAA--------TCGAAGA--TGTAAG-CATATCCCCTAGGATA----------AAATTTTTT-G-TTGC--GTTTATATGACAC-AATAGGT-A-GA-ATAG
gi|19 : agC--GCACTTAGTAAGAA-AAT-AT-ATG-CTTCGTT-CA--GCCACGTACTTCAACAAT-CACTT----GATTG---T-ACA-------TTAG--GTGTTT-TGGTG-GT-------GTGA-T----AC----GA--GGTT--GT-GA---TAT-TGA-A--C-TGATTCA-TTTGAGTTGTC----A-AT-----CA-----AT-TGTTTTTTTCT--GCATGCAAA---T-AC--GCCTCA-TCA-G-A--AGTCTATTT--GCA
gi|2 : cattaacccccatccccacaatcacgcattttaacgcataatctgtttcctcacaatcaATCAC-TAT------AGCCC-TCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGTGTT-TTCTC--ATA-TG-----------TCGTATGGTTTCTCCTTTGATAAATCCCTAT-AAAACTG-AGGGACTGT-GTGCACTTTTTCG-ATCCAAATAT-TGGAAA-GTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCTAGGAT-TCGATTTGCTTCAAATCT--ACTT-CCTTGTACA-TTGTAGTGTCTAAAA-GTGCATTT-ATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CTTT-TCA---AA----------GAATTTCTTTCTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCACA-TACAGATGGGGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTAAA--TTCAAAAATTCAAAAAA-TATTGTTTTCCAATATTAATCTGAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGTA---------TT-AATT----GCA-TAGACAGAT-TTGTCCGATT-TA---CTGTAG-TAT--GTTTGTACTGCAGTACGTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTAACACCA-------AT------AAACATTC-GCTGTTAGGTCTCAAGT----------TCTCGATT-TTGGTG-TAA-AATCAAAGCTATC-CCTGATGAAAGTGCTTAATTTTTGCACTATAGGTGTCAG-AAAATAATCA-CATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCC--------------TGG-GTCG-CCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTTGATTTCATGA--AAAACGTCTAGGTC-AATTTTGGGCAGAAGATATAACCTGCCT-AGCC-TCGTATTATGGTGCTT-T---TGTTGTAA-GAAA--TAATA-TGTGGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGACTGG-TAA-TTAG-ACAGCTGAGAATAGTA-TTCCA--AGGCATTTAGCTGT-CGTTCTTCTTCTTTAATATAATCATATTTG---------CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTT-GTGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATGCAA-GAAC------TTTAGC-A---CTGTGTTTTCGTGC-TAGG-TGAGCTT-TTTTGTTTAATGCTCTGCGTTTTATACGCAATGA-T-TAGCGT-CCGATCGAAACGCCTGGCCATTctttac
gi|20 : AT-TG-TCCAC---ATGCCATATTGCG--GGATT-GCT---AA-GAT-AT-ATGACTCCAGT-TA--GCCACATACCTCAACAAT-CACTT----TACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----AT----GAG-G-TT--AT-GC---TAT-TGA-A--A-TGATTG
gi|21 : atgtcatatttttcatgtGCACA-TCCAATAATCTACAGTTCATAAATTTCTGAATTCAA----------------AAT-TGTTATTTCCCAAAATTAATCTTAGGAGAAAGCTT-GAC-CGTCATGTTAGCG-AATGGTGTGTTAGAACTGTT-AATT----GAA-TGGACAGATAGTATGCTATTCTAACGCTGTATTTA----TTTGCAgcagtgcttaaatcggcgattgatttctt
gi|22 : TGAATT-C---TAAGAATTTCTTGAAATTAGTACATGTCCATCATTTGGGTT-TTT-TT-TTCTC--ATA-TG-----------GTATATGGTTTTATTTTCAATAAATCCCT-T-AAAATTG-ATGGATTAT-GCGT-----------TCCAAATAG-TGT-AATGTGTTTGCAA----GATGGA-----TTAAATATCCAGGAT-GCGAGCTGCCTCAAAtgagtccaaaatcaaat
gi|23 : TTT-G-TTGC--AGTTATATGACAT-GATAGGT-A-GA-ACAG-AGAAAACG--TCTGAAATTTGT----CTCTCTGCAAGATGT-GCAAGTA----TA--TTAAAAGC-----TTTTGT-TTCA----T-TTTTCAAA--TT-CCAG---TGT-CATT-ATTA-A-TG---AC-A
gi|24 : gcagtttcattatattaattacaatcaaATAACAGA-G--TAACTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TATTAGTATAGCCCCTCTTTCGAGGGTTGGTTTTGAAAT-CG-CTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GCT
gi|25 : TCACCCGACAATTGATCT--GATTTGAGATTAAGCACA----TGTTCCCTATATACAATGTACAATCAATTTAGC-A---CAGTGTTTTCG----T-GG-CGAGC-TGTTTTGTGTAATGTTCTGCGTTTTGCAAGCAA
gi|26 : CCTTTAGTTAGTAAAAGGTAATTCTGTACATGATTGTACAATGTATATACGACGTGAGATTAAACACAACTGTGTTTTC----------GTAC------TTT-GCAAG--CTTTGTTT---TGT-T-AG-TTTGT-T-TTTTGTT
gi|27 : TTAAATACG----TACTCTCTGTATACAA-GGAC------GTCAGCAATATTTATGTTTTTGTACTT-TA-CAAGC-A-TTTTGTTTAATGTTCCACTTTTTA-ACACAAAGA-TATAACATCCCCATCAAA
gi|28 : G-A-GGATTTT-GAGCACTTTAGCA-ATCCAAATAT-T-GAAATGAGTTGTTGAGTTTAATGTATAGTTTTAAA-GTCCA
gi|29 : acagaattgcaTA-CTGGCTGATTTTTTTCCGTA-GGCCA-GCTTATCGGAGAATTTATAC-ATCACCCCGATGAAAA-TACGGGAGTATTGTAGCAACCACTGTGTTTGATTTAATGA--AAtaaagttaacggtgtaaaatatatttcctt
gi|3 : actTGA-AG-AAT-AT-ATGGCTCCGATTCA--GCCACGTACCT--ACAAT-CACTT----GACCC---G-A-G-CTAA--TTAA--GTGTTT-CGGTG-GT-------GTGA-T----AT----GA--G-TT--AT-GA---TTT-TGA-A--AATGATTGAATTTGA----TT----C-ATT----GA-T------T-TGTTTTTCT--GCATGCAAA---TTCC--GCCTCA-TCA-G-G--AGTCTA-TTTGGCAGT--C----TA---CAA-TTAT--T-ATGG-CA-GTTT-T--ATTA--TTGTTCACAG--------TGGAGGA--AGTGAG-CATATC-TCC----CA----------AT---TTTC-G-TTGA--GTTAATCTGACAC-GATAT-T-A-GATACA--AGAA---G-TCCTA--TTTT-T----CTTTCTGCAGGATGT-GCCAATA----TT--TC-AAAGC-----TTTAAT-TTTA------TTTTCGAAATTC-CCAG---GGT-TG-T-ATT-TG-TG---ACAAAAAA------CGAAGGG-TATAC--CC-TGTTTT-------TTT--GCTTTT-TGTTAACATCACAGATAACAG-AG--TGGCTCGATCTAA-GTTA-TC-AGTA-CA-CTTGTAATG-TTTGATTGATTTC-TAATCACTTAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAATGCGATTAAGAAATTTCTGAAAT----ACGTCTGCATT-----GCTTGTGT-TTCTTCTC--ATA-TG-----------TTGTATGGTTCCTCCTTTGATAAATCCCT-TAAAAACTG-AGGGATTGTAATGCACTTTTTTCGATCCAAA-ATATGGAAA-GTATTGGTAGGTTTGATGTAC-G--TTGAA-AT-CAGGAT-TCG-TTTGCTTCAAAGTCTAACTTCCCTTGTACACCTGTGGTGTCTAAAA-TTG-ATTTCATTCACCGAAATTTCAGTAT-GTGAATTTAACAAATTGATGAGCAGAATTCCGCTAAAAGTGAA--TAT-TCGTGGATTTCTTTTTCTTCA-CATGGAATATAATGAA
gi|30 : G--TTGTCT----C-CTTGGC--GATGT-GCCAGTA----TTAATCA----------TTTTAC-TT------T-TGCTAGAA--TT-CAAG---AAT-TG-T-ATATGG-TG---AC-GAAAG------CAAAGAG-TATAT--CC--ATTTTg
gi|31 : GAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TTTAATT----GCA-TAGACGGAT-TTTTCCGATT-TA---CTGTAG-TAT--TTTTGTACTGCA----GTAATTAATTCC
gi|32 : --TTGGGAAGAAGATATAATCTGCCCGAGCC-TCATGCAATGTTGC-TATAGATG-TGTAG-A-CA--TTATA-TCTAATATTATCAAACAAACCCT-CTA
gi|35 : aagtCCA-CTTGT-ATGTTTTGATTGATTTCATAACCAC-TAT------AGGCCCTCTTTCAAAGGTTGGTTT
gi|36 : TCATATCTAAGAGTTTT-CTTGCATTAATTTT-ACACAAATTTGTGTCTTG-TGA-TTGG-ACAG
gi|39 : AATTGATGAGCAGAATT-CGTG-ATAGTGAA--TAACTCATGAATTTCTTTTTCT
gi|4 : -AA-AAT-AT-ATGACTCCGAT-CA--GCCATGTACCTCA-TAAT-CACTT-------------------------TAA--GTGTTT-TGGCG-GT-------TTGA-T----AT----GA--GGTT--AT-GA---TAT-TGA-A--A-TCATTGA-TTTCA----TT----A-ATCAATGGA-TTGGCT-T-TGTTTTTCT--GC
gi|4 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaag-----TTTTGC-TTTA----G-TTTTC-AA--TTACCAGCTGGGT-TG-T-ATTTTG-CG---AC-CAAAA------CGAGGGG-TACAC--CC-TGTTTTTT--TTTTTTTTGCTTTT-A-TTAACAT--CAGATAACAGA-G--TGGGTCGATCGTA-GTTA-TCAA-TACCA-CTTCT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-ATAATAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGT-GT-TTTTC--ATA-TG-----------TCGTATGGCTTCTTCTTTGATAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgctttagttttcaattaccagctgggttgtattttgcgaccaaaacgaggggtacaccctgttttttttttttttgcttttattaacatcagataacagagtgggtcgatcgtagttatcaataccacttctatgttttgattgatttcataatcactatagcccctctttcgaaggttggttttgaaatcgataataatttcttgaaatacgtctgcattgcttgtgtttttcatatgtcgtatggcttcttctttgataaatacaa
gi|40 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaagaaaatatatgactccgatcagccatgtacctcataatcactttaagtgttttggcggtttgatatgaggttatgatattgaaatcattgatttcattaatcaatggattggctttgtttttctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCGAAT-TA---CTGTAGT-AT--GTTTGTACTGCT----ATAACTAATTCTTCAAACTGacaa
gi|41 : TCTTTGCAGCATGT-GCCGGTA----TC--TTAAAAAC-----TTTTAC-TTTA----T-TTTTCGA
gi|42 : CCGCCGGAAA-TACTGCCGAACTGCAGCAAC
gi|5 : A-AT-AAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAAT-CACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATATA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA-ATT-------------------AA--------T-GATGA--TTTGAG-CTTATTCTTA----AA----------AA---AATT-A-TTGC--ATTT--------T-GATAGGA-A-GA-TCCGAAAAAAAT-----TG--TCTTTT----CTCTCTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGAA--TT-CCAG---GGG-TG-T-A-TATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTT-ATTT-GCAT--CTGATAA---AAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT-CAA------AATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-
gi|6 : TCAAAT-TG-TATAT-----GT----T-GTCAGGAGTT----GA-AA-AAT-AT-ATGGTTCCCAC-CA--GCCATGTACCTCAACAAT-CACTTAATTGACTGATGT-ACA-CTAA--TTTA--GTGTTT-CAGCG-GT-------GTGA-T----AT----GA--GGTT--AT-GA---------------------------GA----TT----A--------GACT---AT-T-T-TTTCTCTATGCATGCAAA---T-CT--GCCTCA-TCG-G-G--TGTCTA-CT--------------TA---CAATTTATA-T-TTG-------TT-C--ATTA--TT--a
gi|7 : taaggtgaatgtaaggtcaaatatgataattgcgtgtttcaaatacttaattgttagcaattaatgcaactagttatgtccatctaattgttatcagttatgtagaaattcagttattaaatataactacacatcagctgctggagactgccattttgcaagaaaaaagtttctttgatatttcccacaataccatctggtgatgacgcatgggggggggggcatttggctctgtgtgacgagctttaattactagctgaagcttcaactggaaataccagtgatttacgattgattgaaaatgactgagggaatgataaaacttcatgcacttgtgacatttttgA-AATAAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAAT-CACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATATA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA----------------T--T---AA--------T-GATGA--TTTGAG-CTTATTCTTA----AA----------AA---TT---A-TTGC--ATTT--------T-GATAGG--A-GA-TCCGAAAAAAAT-----TG--TCTT-T----CTCTCTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGA---TT-CCAG---GGT--G-T-AT-ATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTT-ATTTG-CAT--C---TAA--AAAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT-CAA------AATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-cttga
gi|8 : TTCAAAT-TG-TACAT---ATGTCAG--------GAGTTCG-----AA-AAT-AT-ATGGCTCCCAC-CA--GCCATGTACCTCAACAAT-CACTT----GATTC---T-ACA-CTAA--TTAA--GTGTAT-TAGCG-GT-------GTGA-T----A-----TA--A-TT--AC-GAGGTTAT-GGGTC--A-TGA--GA-TTTGA----TTTCTCA-ATA----GA-CTG-AT-T-TTTTTCTCTCCGCATGCAAA---T-CT--GCCTCA-TCA-G-G--GTTTTA-T
gi|9 : ttttgttgtttttttttttagaaatcagctacacatcagctgttggaggctgccaatttgcaagaaaaagttatggctcttttttgtatttcccacaatgtcatctggtgatgacgcatcagaggcaactgcctctcagcggtgagcattaattattagctgcagcttcaactgaaaataccagtgatttgggatggattgatataaatgacagagaaaaataaaacttgatgcacttgtggacattgtgacattttTT-CAGCGAGT-------GTGACT----AATCGCGA--G-TTTCAT-AA---TGT--GA-G--A-TGATTGG-TTTGA----TT----A-TT-----GA-T---TT-T-GGTTTTTCTG-GCATGC-AA---T-CCCAGCATCATTCA-GTGACAGTCTA-TT--GC-GT--C----TAAACCAAATTACT-TAATGCCCA-GTTTGCTAATTA---T--TCACAAAATTTTTGTAGAGGATGTGTGAG-CCAATACTTC----TT----------AA---TTTG-G-TTGCGGGTTTATATGA-ACAGATCGGTCA-GA-ACAGAGAAAAGT--CTCTT--TTTCCTGTTCTTTTCTGC-GGATGT-GCCAATAGTTTTT--TC---AGCCTTTTTTTTGC-TTTAAATGT-TTTTCGAA--TT-CCAG---GGT-TG-TAATTGTG-TGTGAAC-AAAAAACAAACTGAGCGG-TATAC--C-----TCTTG--TTTTTT--GCTTTTGAGCTCACag
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTATCATTTTTATGGAAATCAGCTATCAAATATAGCTACACATCAGTTGCTGGAGTCTGCCATATTGCAAGATAAAGTTATCGCTCTTTTTGATATTTCCCACAATATCATCTGGTGATGACGTATACAGGGCAATTATCTCTGAGTGATGCATGATGAGCTTTAATTATTAGCTCCAGCGTCAACCAGTGATTTGGGATGGATTGATGAAAATAGGGAAAATGATGAATCTTTATGCACTTAAGGACAAAGTGACTTTCTTTCAAAGTTTGCATGTTGTTGTCATAATATAAATTTCGGGAAATATAGC
Unaligned ( gi|17 ): GAATATCACATTTGATTTAAAGGGAGCGCAAGGTCAAAAATGATAATTGGTCAATTCAAATACTGCGTTGGTAGCAATTAATTCCACTGGTTATTTTCATCTGATTGTTATCAGTTGTGTAGAAATCAGCTATTAAATACCGCTACACATCAGCTGCTGGAGGCTGCCATTTTGAAAGATGAGAGTTATCGCTCTTTTTGATATTTCCCACAATCCAATCTGTTGATGATGTACAAGAGTCAATTGCCTCTGAGTGAAAGCAGCTGATCATGTCTGACTGCAA
Unaligned ( gi|33 ): ATATGGCTACACATCAGCTGCTGGAGGCTGCCATTTTGCAAGATAAAGTTATCTCTCTTTTTGATATTTCCCATGATACCA
Unaligned ( gi|34 ): TAAACCCATCTGCTGATGATATACAAGGGGCAACTGCTTTCGAGTGAAAGCAGCTGGTCACGCCTGATGGCACCGCAAAG
Unaligned ( gi|37 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Unaligned ( gi|38 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Alignments
lowQualScore : 1 1 444444444444444444 2222222 1111111 3333333333333333 444444444444444444444 11 55555555555555 1 2222 1111 222222222222222222 1111111111111111 4444444444444444444444 111111 1 1111111 2222222 22222222 111111 11 1111 11111 11 55555555555 111 22 1 22222 1 11 1 1 1 1 1 1 333333333 1 1 1 11 111 1 1 2222222222222 11 1 33333 1 111 666666666666666 11 22222222 4444444444 1111 111 1111111 22222 1 1 1111 333333 1 2 6666666666 1 1 1 1 1 1 1 1 11 1 1 111 11 11 33333 1 1 2222222222 3333333 1 1 1 1 1 1 1 1 1 5555555555555555 2222 1 1 1 1 33333 11 1111 222222 33333 1111 222 111 1
lowQualScore : 0 0 444444444444444444 3333333 2 2 2 5 33 6 2 6666 555 3 3 888 44 2 5 2222222 2 6666666666666666 33 5 555 2 2 5555 3 4 6666 555555555555555555555 3 3 9 11 555 3 555 3 3 6666 3 44444444444444 666 4 5 2222 88 44 2222 55 111111111111111111 666 4 77 333 7777777777777777 777 3 4 55 666 77777 77 4 4 22 3333333333333333333333 3 4 8888 77777 99999 3 111111 55 4 777 4 4 4 4 2 777 4 3333333 4 1 4444444 999 44 66 0 888 33 99 7 00000000 3 5 5 1 3 5 5 5 444444 0 2 5 33 3 0 4 0000 22222 88 5 5 5 55 5 44444444444 1 1 999 999 0 5 0 11 77 0 8 0 5 0 22222 8 0 3 88 6 3 3 6 6 6 3 3 3 0 0 1 2 999999999 6 5 5 5 7 0 88 777 6 3 3 9999999999999 88 3 33333 0 2 777 222222222222222 11 1 1 0 88888888 88 3333333333 8 7777 8 8 8 6 111 7777777 33333 3 3 1 8888 888888 7 3 7 6 5555555555 3 7 3 3 2 5 1 5 2 0 33 0 0 666 3 0 777 00 2 0 8 0 8 2 22 55 0 33 7 33333 3 3 0 0 1 3333333333 4444444 1 0 7 2 0 0 3 3 7 0 1 0 0 0 6 3 7 1 7 3 6 3 7777777777777777 8888 5 5 1 1 5 3 33333 33 7777 0 1 8 1 333333 0 33333 0 0 8 0000 000 2 77 777 2
lowQualScore : . . .................. ....... . . . . .. . . .... ... . . ... .. . . ....... . ................ .. . ... . . .... . . .... ..................... . . . .. ... . ... . . .... . .............. ... . . .... .. .. .... .. .................. ... . .. ... ................ ... . . .. ... ..... .. . . .. ...................... . . .... ..... ..... . ...... .. . ... . . . . . ... . ....... . . ....... ... .. .. . ... .. .. . ........ . . . . . . . . ...... . . . .. . . . .... ..... .. . . . .. . ........... . . ... ... . . . .. .. . . . . . ..... . . . .. . . . . . . . . . . . . . ......... . . . . . . .. ... . . . ............. .. . ..... . . ... ............... .. . . . ........ .. .......... . .... . . . . ... ....... ..... . . . .... ...... . . . . .......... . . . . . . . . . . .. . . ... . . ... .. . . . . . . .. .. . .. . ..... . . . . . .......... ....... . . . . . . . . . . . . . . . . . . . . . . ................ .... . . . . . . ..... .. .... . . . . ...... . ..... . . . .... ... . .. ... .
lowQualScore : 0 0 777777777777777777 3333333 9 9 9 7 99 7 9 1111 000 1 1 222 22 9 7 1111111 9 8888888888888888 99 7 000 9 9 2222 1 2 5555 888888888888888888888 1 1 2 55 888 3 444 3 3 2222 1 88888888888888 444 4 6 5555 66 88 5555 00 666666666666666666 777 0 00 000 8888888888888888 000 6 0 55 111 77777 44 0 0 44 6666666666666666666666 2 0 5555 66666 11111 6 222222 55 0 000 0 0 0 9 0 000 0 6666666 4 9 6666666 444 66 99 7 111 77 22 8 77777777 0 7 7 4 0 0 0 0 444444 2 5 0 88 2 2 5 6666 55555 99 7 7 7 77 7 33333333333 7 0 333 666 4 7 8 66 00 8 0 8 4 8 44444 0 0 2 33 7 3 3 7 7 7 3 3 2 0 0 2 5 000000000 7 5 0 0 3 7 33 777 7 3 3 7777777777777 33 3 33333 0 5 555 222222222222222 00 0 4 8 88888888 66 0000000000 0 0000 0 0 2 7 777 7777777 00000 3 3 0 0000 333333 3 3 3 7 3333333333 3 3 3 3 0 5 0 5 0 0 22 0 0 000 0 2 555 22 5 8 0 6 2 5 88 22 2 88 3 44444 2 2 0 0 2 0000000000 2222222 2 0 0 5 0 2 2 2 0 0 0 0 0 0 7 3 3 0 3 3 7 3 7777777777777777 3333 5 5 0 0 5 3 33333 88 0000 8 4 0 0 000000 8 44444 8 8 0 6666 222 0 88 777 0
consensus : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCACAA--------TNGAGGA--TGTGAG-CATATCCTCC----CA----------AA---TTTT-G-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAATG-CTCTG--TTTTCT----CTCTCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTT-AGTTAACAT--CAGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
Reference ( family-1976 ) : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCACAA--------TNGAGGA--TGTGAG-CATATCCTCC----CA----------AA---TTTT-G-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAATG-CTCTG--TTTTCT----CTCTCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTT-AGTTAACAT--CAGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
gi|1 : TTCAAATCTGATACATTGCACATTAAAT-G----GAATTTAGTGA-AA-AAT-ATTATGGCCC--ATGCA--GCCACGCAC-TCACAAAC-CACTT----GACTC---T-ACAGCTAAGTTTAAAAGTGTTT-CGGCGTGTATCAGACGTGA-T----A-----GA--G-TT--AT-GA---TAT-TGG-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTGAC----TA---CAAATTATC-T-ATG--CACGTTT-T--ATTA--TT---CATA---------TAGAGGA--AG-GAGACA-ATCCTCC----CA----------AA---TTTG-G-TTGC--GTATAT-TCAGAA-GATATG--A-TT-ACAGAAGCA-----TTTTA--TTTTC---------------AAT-T-GC-AACA----TT----AAAA-------TTATGCGTTTA----TGTTTTCGAA--TC-TCGC---GGT-TG-T-ATTATG-TG---AC-AAAA-------CGAAAGG-TA-AC--C----TTTTTGACTTCTTT--A--TAC-AGTCAAGAT--CTACTAGCAGAAG--TGGCTCGATC-TA-GTTA-TTCAATACCA--TTGT-AAGTTT-GATTG--TTCATAATCAC-TAT------AGCCTCTCTTTCGAAAGTTGGTTT-GAAAT-CG-TTAAGAATTTCTTGAAA-----ACGTCTGAATT-----GCTT-TGT-GT-TTCTC--AAAATG-----------TCATATGGTTTCTCCTTTGA-AAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAAGGTAT-GGTAGGTTTGATGTAC--TTTTGAA-ATCTAGGATATCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAAAGTGCATTTCATTCAC--GAATTTCA-TATTGTGAATTTAAGCAATTG-TGAGCAGAAAT-CGCT-ATAGTGAAAATA--CCATGAATTTCTTTTTCTTCACCATTGAATATAATGAA-CCATCATCACGATAACGCCGCACG-TACGTTATGCGATGTT-ACTTGGAA--ATTGGTTTATAAT-TTCCTCGGTTATCCTGATGTAGTCCTGATATCACAATACAGAT--GGAGCATTTCAGAAC-CCCATTAATAGCACAATC--ATGATCT---GTTTATAAACTTTTGAATTCAAATTC----------AAAAA-TATTGTTTTCCAAAAGTAATCTGAG-AGATAGCTCAGATGC-T----TTAATTTGATGGTAT----------TT-GTTTTAAGGCAGTAGACGGAT-TT-TCCGATT-TA---CTGTAGTTATTTATTTGTACTGC-----GTAATTAATTCCCAAAACTGCGATGTTT-GTGTAGAGTGATTTGACATCATAGTCTGACCAATTAAAACATTCCGC-GTT-AGTCTCAAGC---------TTCTCGATTATGGGTGATAAGAATCAGAGCTATCGCCTGATG-AAGTGCT-AATTTTTGCACTATATGTGTCAGAAAAATAAGCAACTTAGCTGACTGATCTTT--CCGTGTGGCGTCGCCTATCTGAGAA---ATGATGTCGCCCCGCCGGAAAATACTGCCGAAACGCAGCAACAATTAC--TTGATTTCATGAGAAAAACGTCTAGGTCCAA--TTGGGCAGAAGATATA-TCTGCCT-AGCCATCGTTTTATGGTGC-T-T---TG-TGTAAAG-AAGATAATACTGT-GTATCATCCAACACACCCTGCCATTTTCAT-TTTGAGAGTTTTTCTTG-ATTAATTTT-ACAAGATTTTGTGACTTGGTAAATTGGGACAGCTGAGAATA-TA-ATGTATTGGGAATT-AGCGGTACGTTCTCCTTC-TTAATATAATCA-ATTTGGCTAA-----GCATAATAACGCA----CATGTTGTTTTTATCGGCGTTCTTGATTATGATATCTTTGCATTTTCTTGGATCTATCAAAGACTGCCGTTCAGAATTACTTAAATTGTCGTGAATTTTTAACGTTTGCATAGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAA-TCCGCTATTTGTACGGGATGGATGAATCTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-TAAC------TTTAGC-A---CTGTGTTTTCGTGC-T-AGCCGAGCGT-TTTTGTTTAATGCTCTGCGTTTTCTACGCAAAGATT-TAGCGTTCCGATCGAAACGCCTAGCCATT
gi|10 : aacGA-AC-AATTAT-ATGGCTCCAAT-CTTTGCCATGTACTACA-CAAT-TACTT----GACTC---TGACA-CTA---TTAA--GTGTTTCCGGCA-GTC------GTGA-TATTGA-----GG--G-TT--AT-G----TATCTGA-ATGA-TCATTAA-TTTG--------------------GA-T----------TTTTTCT--GCAAGCGAAATTT-CT--ACCTCA-TCAGG-G--ATTCTA-TT--TGACTA-T----TA---C-AATTATCAG-GGG--CA-ATTT-CATATTACTTT--TTACAA--------TCAAGGA--ATTGAA-C-TATCC-CC----CATATGTTCTTTAA---TTTT-G-CT-C---TTTG-ATG-------TAGGT-AGGA-ACTGGGGGAAATA-ATCTG-------T----CTCTCTACAGGATGTGGCCAGTA----TT--TT-AAAGC-----TT-----------------------------CAG---GTTATG-T-AATTTGTTG---AC-AAAAA------CAAGGGGATATACAGCTGTGTTATTG--TTCTTT--g
gi|11 : AAAT-GTC--GAAT---GTAAGAA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTC-ACAAT-CACTT----GACTC---
gi|11 : acccagtaacgttttagacaatgcgtccaagattgttaacggACTCGTTGAGAA-AAT-AT-AGGGCTTCGAT-CA--GCCACGTACATCA-CAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--CTCTTT-CGGCG-GT-------GTGA-TGC--A-----AG--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-ATCAATCGA-TTG-ATGT-TGTTTTTCT--GCATGCAAA---T-CC--GCCCAA-TCA-G-G--AGTCTA-TT--TGAGGT-C----TA---C-AATTATC---ATG--CA-ATTT-C--ATTA--TT--TTACAA--------TTGAGGA--TGTGAG-CATAT-CTCC----CA----------AA---TTTT-gttgagaaaatatagggcttcgatcagccacgtacatcacaatcacttgactctacactaattaactctttcggcggtgtgatgcaaggttatgatattgaaatgattgatttgattaatcaatcgattgatgttgtttttctgcatgcaaatccgcccaatcaggagtctatttgaggtctacaattatcatgcaatttcattattttacaattgaggatgtgagcatatctcccaaatttt
gi|12 : acccagtaacgttttagacaatgcgtccaagattgttaacggaaatgtcgaatgtaagaaaatatatggctccgatcagccacgtacctcacaatcacttgATAATCAGCATA-CTGACTGGTCTCTT-CCGTA-GGCGT-G--TATCTGAAAA---ATGG-GTCGCCCCGGTGG----TA-----GAA-----------ATTAGGT-CAATTTTATGA--AA----------TC------TGAGCAGAGGAT-CAATCTGCTT-AGCC-TCGTATTATGGTGC-T-T---T----TAA----A--TGGTA-TGTAGTATCATCAAGCACACT-----ATTTTCACATTTGAGAATTTTTCTTGTCTTAATTTTCACAAGATTGTGTGTCTTG-TAA-TTAG-ACAAATGAGAATAGTACATGTATTTGGAATTTAACTGT-CTTTCTC---C-GTAATGTAATCA------GCTGATTTTCGCATGATAACACACAGTCATATTGTTTTTATCGACTTT
gi|13 : gatcTACTCGTAAGTATTTTTGTACAATAT-CCTTG-TCCTC-TGATGCAGTC-GGTTATCG------------------TTTAG--ACTCC-----ATAGCACA-TCCAGTGATCT---GTATGTAAATTTTTAAATTCAA--TT----------GAAATGTATTATATTCCAAAGTTAATCTCAGGAAAAA--TCATAT----------------AT----------------T-AAAT----GCA-TACATATAT-CTGTCCGATT-TA---CTATAGT-AT--ATTTCTACTGCA----GTAAATGATTCTTCAAATTGT-ATGTTTTGTGTAAAAAGATGTTACACCATAG-CTGAC------AG----TC-GCTTTTTGGTCTCAAGTACAATCAAACCCTCGATT-TTTGTAATAA-AATCTGAGCTATC-TCTAATGGAAGTataaattccga
gi|15 : -G--AGTCGA-TTT-GCACTG------TA---CAA-TTATC---ATG--CA-GTTT-C--ATTA--TT--------------------------GCGAG-CAGATCC-CC----CA----------AA---TTTTTG-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACA-AAGAAAATGACGTTG--T---------CTCTCTGCACGATGT-ACCAGTA----TT--TCAAAAGC-----TCTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTTTG-TG---AC-AAAAC------CGAGGGG-CATAC--CC-TGTTTTT---T---------------GTTAACAC--CAGATAAC---AG--TGGCTCGATCATATACTACTCAATTACTAGGTTAT-ATGT
gi|16 : GA-AA-AAA-A----GGCTCCGAT-CA--GCCACGTACCTCA-CAATTCACTT----GACTC---T-ACA-CTAA--TTA---GTGTTT-CG-CG-GT-------GTGA-T----ACGT--GA----TT--AT-GA---TAT-TGA-A--A-TGATTGA-TT-GA----TT----A-ATT----GA-T----T-T-TGTTTTTCT--GCATGCAAA---T-C---GCCTCA-TCA-G-G--AGTCTA-TTT-GCAGT--C----TA---CAA-TTAT--T-ATG--CA-GTTT-T--ATTA--TT--TCACAA--------TTGAGGA--TGTGAG-CAAATC-TCC----CA----------AA---TTTT-GGTTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAAAgtgtaatttaccagatcatagatctttttctgtttgaa
gi|18 : cctgaacagtttcaaaccggctaaagtcttagtagagtgaaaga-AA-AAT-CT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-AACTT----TATTC---T-GCA-C-----TTAA--GTGTTT-CGGCT-GA-------TTGA-T----A-----CAAGG-TT--AT-GG---TAT-TGA-A--T-TGATTGA-TTT-A----TC----A-ATC----GA-TTGGAT-T-TTTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TTG-GCACT--T----TA---C-AATT-TT-T-ATG--CA-GTTT-C--ATTA--TT--TTACAA--------TCGAAGA--TGTAAG-CATATCCCCTAGGATA----------AAATTTTTT-G-TTGC--GTTTATATGACAC-AATAGGT-A-GA-ATAG
gi|19 : agC--GCACTTAGTAAGAA-AAT-AT-ATG-CTTCGTT-CA--GCCACGTACTTCAACAAT-CACTT----GATTG---T-ACA-------TTAG--GTGTTT-TGGTG-GT-------GTGA-T----AC----GA--GGTT--GT-GA---TAT-TGA-A--C-TGATTCA-TTTGAGTTGTC----A-AT-----CA-----AT-TGTTTTTTTCT--GCATGCAAA---T-AC--GCCTCA-TCA-G-A--AGTCTATTT--GCA
gi|2 : cattaacccccatccccacaatcacgcattttaacgcataatctgtttcctcacaatcaATCAC-TAT------AGCCC-TCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGTGTT-TTCTC--ATA-TG-----------TCGTATGGTTTCTCCTTTGATAAATCCCTAT-AAAACTG-AGGGACTGT-GTGCACTTTTTCG-ATCCAAATAT-TGGAAA-GTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCTAGGAT-TCGATTTGCTTCAAATCT--ACTT-CCTTGTACA-TTGTAGTGTCTAAAA-GTGCATTT-ATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CTTT-TCA---AA----------GAATTTCTTTCTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCACA-TACAGATGGGGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTAAA--TTCAAAAATTCAAAAAA-TATTGTTTTCCAATATTAATCTGAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGTA---------TT-AATT----GCA-TAGACAGAT-TTGTCCGATT-TA---CTGTAG-TAT--GTTTGTACTGCAGTACGTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTAACACCA-------AT------AAACATTC-GCTGTTAGGTCTCAAGT----------TCTCGATT-TTGGTG-TAA-AATCAAAGCTATC-CCTGATGAAAGTGCTTAATTTTTGCACTATAGGTGTCAG-AAAATAATCA-CATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCC--------------TGG-GTCG-CCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTTGATTTCATGA--AAAACGTCTAGGTC-AATTTTGGGCAGAAGATATAACCTGCCT-AGCC-TCGTATTATGGTGCTT-T---TGTTGTAA-GAAA--TAATA-TGTGGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGACTGG-TAA-TTAG-ACAGCTGAGAATAGTA-TTCCA--AGGCATTTAGCTGT-CGTTCTTCTTCTTTAATATAATCATATTTG---------CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTT-GTGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATGCAA-GAAC------TTTAGC-A---CTGTGTTTTCGTGC-TAGG-TGAGCTT-TTTTGTTTAATGCTCTGCGTTTTATACGCAATGA-T-TAGCGT-CCGATCGAAACGCCTGGCCATTctttac
gi|20 : AT-TG-TCCAC---ATGCCATATTGCG--GGATT-GCT---AA-GAT-AT-ATGACTCCAGT-TA--GCCACATACCTCAACAAT-CACTT----TACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----AT----GAG-G-TT--AT-GC---TAT-TGA-A--A-TGATTG
gi|21 : atgtcatatttttcatgtGCACA-TCCAATAATCTACAGTTCATAAATTTCTGAATTCAA----------------AAT-TGTTATTTCCCAAAATTAATCTTAGGAGAAAGCTT-GAC-CGTCATGTTAGCG-AATGGTGTGTTAGAACTGTT-AATT----GAA-TGGACAGATAGTATGCTATTCTAACGCTGTATTTA----TTTGCAgcagtgcttaaatcggcgattgatttctt
gi|22 : TGAATT-C---TAAGAATTTCTTGAAATTAGTACATGTCCATCATTTGGGTT-TTT-TT-TTCTC--ATA-TG-----------GTATATGGTTTTATTTTCAATAAATCCCT-T-AAAATTG-ATGGATTAT-GCGT-----------TCCAAATAG-TGT-AATGTGTTTGCAA----GATGGA-----TTAAATATCCAGGAT-GCGAGCTGCCTCAAAtgagtccaaaatcaaat
gi|23 : TTT-G-TTGC--AGTTATATGACAT-GATAGGT-A-GA-ACAG-AGAAAACG--TCTGAAATTTGT----CTCTCTGCAAGATGT-GCAAGTA----TA--TTAAAAGC-----TTTTGT-TTCA----T-TTTTCAAA--TT-CCAG---TGT-CATT-ATTA-A-TG---AC-A
gi|24 : gcagtttcattatattaattacaatcaaATAACAGA-G--TAACTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TATTAGTATAGCCCCTCTTTCGAGGGTTGGTTTTGAAAT-CG-CTAAGAATTTCTTGAAAT----ACGTCTGCATT-----GCT
gi|25 : TCACCCGACAATTGATCT--GATTTGAGATTAAGCACA----TGTTCCCTATATACAATGTACAATCAATTTAGC-A---CAGTGTTTTCG----T-GG-CGAGC-TGTTTTGTGTAATGTTCTGCGTTTTGCAAGCAA
gi|26 : CCTTTAGTTAGTAAAAGGTAATTCTGTACATGATTGTACAATGTATATACGACGTGAGATTAAACACAACTGTGTTTTC----------GTAC------TTT-GCAAG--CTTTGTTT---TGT-T-AG-TTTGT-T-TTTTGTT
gi|27 : TTAAATACG----TACTCTCTGTATACAA-GGAC------GTCAGCAATATTTATGTTTTTGTACTT-TA-CAAGC-A-TTTTGTTTAATGTTCCACTTTTTA-ACACAAAGA-TATAACATCCCCATCAAA
gi|28 : G-A-GGATTTT-GAGCACTTTAGCA-ATCCAAATAT-T-GAAATGAGTTGTTGAGTTTAATGTATAGTTTTAAA-GTCCA
gi|29 : acagaattgcaTA-CTGGCTGATTTTTTTCCGTA-GGCCA-GCTTATCGGAGAATTTATAC-ATCACCCCGATGAAAA-TACGGGAGTATTGTAGCAACCACTGTGTTTGATTTAATGA--AAtaaagttaacggtgtaaaatatatttcctt
gi|3 : actTGA-AG-AAT-AT-ATGGCTCCGATTCA--GCCACGTACCT--ACAAT-CACTT----GACCC---G-A-G-CTAA--TTAA--GTGTTT-CGGTG-GT-------GTGA-T----AT----GA--G-TT--AT-GA---TTT-TGA-A--AATGATTGAATTTGA----TT----C-ATT----GA-T------T-TGTTTTTCT--GCATGCAAA---TTCC--GCCTCA-TCA-G-G--AGTCTA-TTTGGCAGT--C----TA---CAA-TTAT--T-ATGG-CA-GTTT-T--ATTA--TTGTTCACAG--------TGGAGGA--AGTGAG-CATATC-TCC----CA----------AT---TTTC-G-TTGA--GTTAATCTGACAC-GATAT-T-A-GATACA--AGAA---G-TCCTA--TTTT-T----CTTTCTGCAGGATGT-GCCAATA----TT--TC-AAAGC-----TTTAAT-TTTA------TTTTCGAAATTC-CCAG---GGT-TG-T-ATT-TG-TG---ACAAAAAA------CGAAGGG-TATAC--CC-TGTTTT-------TTT--GCTTTT-TGTTAACATCACAGATAACAG-AG--TGGCTCGATCTAA-GTTA-TC-AGTA-CA-CTTGTAATG-TTTGATTGATTTC-TAATCACTTAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAATGCGATTAAGAAATTTCTGAAAT----ACGTCTGCATT-----GCTTGTGT-TTCTTCTC--ATA-TG-----------TTGTATGGTTCCTCCTTTGATAAATCCCT-TAAAAACTG-AGGGATTGTAATGCACTTTTTTCGATCCAAA-ATATGGAAA-GTATTGGTAGGTTTGATGTAC-G--TTGAA-AT-CAGGAT-TCG-TTTGCTTCAAAGTCTAACTTCCCTTGTACACCTGTGGTGTCTAAAA-TTG-ATTTCATTCACCGAAATTTCAGTAT-GTGAATTTAACAAATTGATGAGCAGAATTCCGCTAAAAGTGAA--TAT-TCGTGGATTTCTTTTTCTTCA-CATGGAATATAATGAA
gi|30 : G--TTGTCT----C-CTTGGC--GATGT-GCCAGTA----TTAATCA----------TTTTAC-TT------T-TGCTAGAA--TT-CAAG---AAT-TG-T-ATATGG-TG---AC-GAAAG------CAAAGAG-TATAT--CC--ATTTTg
gi|31 : GAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TTTAATT----GCA-TAGACGGAT-TTTTCCGATT-TA---CTGTAG-TAT--TTTTGTACTGCA----GTAATTAATTCC
gi|32 : --TTGGGAAGAAGATATAATCTGCCCGAGCC-TCATGCAATGTTGC-TATAGATG-TGTAG-A-CA--TTATA-TCTAATATTATCAAACAAACCCT-CTA
gi|35 : aagtCCA-CTTGT-ATGTTTTGATTGATTTCATAACCAC-TAT------AGGCCCTCTTTCAAAGGTTGGTTT
gi|36 : TCATATCTAAGAGTTTT-CTTGCATTAATTTT-ACACAAATTTGTGTCTTG-TGA-TTGG-ACAG
gi|39 : AATTGATGAGCAGAATT-CGTG-ATAGTGAA--TAACTCATGAATTTCTTTTTCT
gi|4 : -AA-AAT-AT-ATGACTCCGAT-CA--GCCATGTACCTCA-TAAT-CACTT-------------------------TAA--GTGTTT-TGGCG-GT-------TTGA-T----AT----GA--GGTT--AT-GA---TAT-TGA-A--A-TCATTGA-TTTCA----TT----A-ATCAATGGA-TTGGCT-T-TGTTTTTCT--GC
gi|4 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaag-----TTTTGC-TTTA----G-TTTTC-AA--TTACCAGCTGGGT-TG-T-ATTTTG-CG---AC-CAAAA------CGAGGGG-TACAC--CC-TGTTTTTT--TTTTTTTTGCTTTT-A-TTAACAT--CAGATAACAGA-G--TGGGTCGATCGTA-GTTA-TCAA-TACCA-CTTCT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-ATAATAATTTCTTGAAAT----ACGTCTGCATT-----GC-T-TGT-GT-TTTTC--ATA-TG-----------TCGTATGGCTTCTTCTTTGATAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgctttagttttcaattaccagctgggttgtattttgcgaccaaaacgaggggtacaccctgttttttttttttttgcttttattaacatcagataacagagtgggtcgatcgtagttatcaataccacttctatgttttgattgatttcataatcactatagcccctctttcgaaggttggttttgaaatcgataataatttcttgaaatacgtctgcattgcttgtgtttttcatatgtcgtatggcttcttctttgataaatacaa
gi|40 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaagaaaatatatgactccgatcagccatgtacctcataatcactttaagtgttttggcggtttgatatgaggttatgatattgaaatcattgatttcattaatcaatggattggctttgtttttctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCGAAT-TA---CTGTAGT-AT--GTTTGTACTGCT----ATAACTAATTCTTCAAACTGacaa
gi|41 : TCTTTGCAGCATGT-GCCGGTA----TC--TTAAAAAC-----TTTTAC-TTTA----T-TTTTCGA
gi|42 : CCGCCGGAAA-TACTGCCGAACTGCAGCAAC
gi|5 : A-AT-AAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAAT-CACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATATA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA-ATT-------------------AA--------T-GATGA--TTTGAG-CTTATTCTTA----AA----------AA---AATT-A-TTGC--ATTT--------T-GATAGGA-A-GA-TCCGAAAAAAAT-----TG--TCTTTT----CTCTCTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGAA--TT-CCAG---GGG-TG-T-A-TATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTT-ATTT-GCAT--CTGATAA---AAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT-CAA------AATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-
gi|6 : TCAAAT-TG-TATAT-----GT----T-GTCAGGAGTT----GA-AA-AAT-AT-ATGGTTCCCAC-CA--GCCATGTACCTCAACAAT-CACTTAATTGACTGATGT-ACA-CTAA--TTTA--GTGTTT-CAGCG-GT-------GTGA-T----AT----GA--GGTT--AT-GA---------------------------GA----TT----A--------GACT---AT-T-T-TTTCTCTATGCATGCAAA---T-CT--GCCTCA-TCG-G-G--TGTCTA-CT--------------TA---CAATTTATA-T-TTG-------TT-C--ATTA--TT--a
gi|7 : taaggtgaatgtaaggtcaaatatgataattgcgtgtttcaaatacttaattgttagcaattaatgcaactagttatgtccatctaattgttatcagttatgtagaaattcagttattaaatataactacacatcagctgctggagactgccattttgcaagaaaaaagtttctttgatatttcccacaataccatctggtgatgacgcatgggggggggggcatttggctctgtgtgacgagctttaattactagctgaagcttcaactggaaataccagtgatttacgattgattgaaaatgactgagggaatgataaaacttcatgcacttgtgacatttttgA-AATAAT-AT-ATGGCTCTGAT-CA--GTGACATACTTCAATAAT-CACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA-T----A-----CAAGG-TG--GTAGA---GAT-T-A-A--G-TAATTGA-TT--A----CT----ATATA----GA-A---AT-T-T----TGCT--GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTC-TT------TG-CCCTTTA---CAA-TCATC---ATG--CA----------------T--T---AA--------T-GATGA--TTTGAG-CTTATTCTTA----AA----------AA---TT---A-TTGC--ATTT--------T-GATAGG--A-GA-TCCGAAAAAAAT-----TG--TCTT-T----CTCTCTGGAGGATGT-GCCTGTA----TT--TTAAAAGC-----TTTTGT-TTTA----T-ATTTTGA---TT-CCAG---GGT--G-T-AT-ATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTT-ATTTG-CAT--C---TAA--AAAGCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT-CAA------AATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATC-----G-TT-TGC-TT-TTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTGAA-GGATTAT-cttga
gi|8 : TTCAAAT-TG-TACAT---ATGTCAG--------GAGTTCG-----AA-AAT-AT-ATGGCTCCCAC-CA--GCCATGTACCTCAACAAT-CACTT----GATTC---T-ACA-CTAA--TTAA--GTGTAT-TAGCG-GT-------GTGA-T----A-----TA--A-TT--AC-GAGGTTAT-GGGTC--A-TGA--GA-TTTGA----TTTCTCA-ATA----GA-CTG-AT-T-TTTTTCTCTCCGCATGCAAA---T-CT--GCCTCA-TCA-G-G--GTTTTA-T
gi|9 : ttttgttgtttttttttttagaaatcagctacacatcagctgttggaggctgccaatttgcaagaaaaagttatggctcttttttgtatttcccacaatgtcatctggtgatgacgcatcagaggcaactgcctctcagcggtgagcattaattattagctgcagcttcaactgaaaataccagtgatttgggatggattgatataaatgacagagaaaaataaaacttgatgcacttgtggacattgtgacattttTT-CAGCGAGT-------GTGACT----AATCGCGA--G-TTTCAT-AA---TGT--GA-G--A-TGATTGG-TTTGA----TT----A-TT-----GA-T---TT-T-GGTTTTTCTG-GCATGC-AA---T-CCCAGCATCATTCA-GTGACAGTCTA-TT--GC-GT--C----TAAACCAAATTACT-TAATGCCCA-GTTTGCTAATTA---T--TCACAAAATTTTTGTAGAGGATGTGTGAG-CCAATACTTC----TT----------AA---TTTG-G-TTGCGGGTTTATATGA-ACAGATCGGTCA-GA-ACAGAGAAAAGT--CTCTT--TTTCCTGTTCTTTTCTGC-GGATGT-GCCAATAGTTTTT--TC---AGCCTTTTTTTTGC-TTTAAATGT-TTTTCGAA--TT-CCAG---GGT-TG-TAATTGTG-TGTGAAC-AAAAAACAAACTGAGCGG-TATAC--C-----TCTTG--TTTTTT--GCTTTTGAGCTCACag
blockSeqs : . . ATGCCATATTGCG CGTTGAG T T . T TT A T AATT ATG G . A . C A C C AATCGCGAG TC A GGT C T TGA A T GTTG AATCAATGGATTGGC G G G AT ATT T CCA T G TGAC T TGGCAGTC AAC A A CAG CC A GCTA CT TCACAAAATTTTTGTA TGT . AT CCC CATATGTTCTTT ATT T G GG ATA ACAC TC G T GG AGTCTCTTTTTCCTGTTC A G GTTT AATCA CTTTT . AATGT AT A CTG A T A T T TGA A AACAAAC A A AGCTGTG G TC TT GAG AA CA A AAAGCT A T C A T G A T TAGTAT C G GA A C TAGT ATTTG GT G G C TA . GCACTTATTTC G T AT AG A TT CG A T TAGTT T . A TA C C . C C C G . A C A C G TAACTCA C A . G T GT AT G . . ACATACAGATGG . T . . C ACA TTCAAAAATTCAA TG C A CGTCATG T GTTAGAACTG T . . A G C ACG TATA AGTAC . T T TAG . A . T T ACAATCAAAC . A . . G T G . G . TT . . CTT T TTT G C . C C GG TT . A AATT A A G . A TATAGATG GAAA G . A C . A T T C T . . . G C T T T . C T GCTGATTTTC CAGT . A A A . T CTGTA AC ACTG C T A AATCAA AATAT T AGG TT T AT TA C
blockSeqs : . . GTTGTCAG TAGTAAG . . . . . A . . . . . A . . . . . ATTGAGGG . A . . . AA . T . AATCAATCGATTGA . . G CC . . T . . G . TGACTAT . A A TTA G A CAT . GTTCACAGTG A . AG TCT AGGATA . . . . ATA ACAC T . . AA AACGTCTGAAATTTGT A . . TCA . . T . . . . . . T A . . A . A CCTG T TT . TG AA . A CAGAG G . . A G . . . . C . G A C . . CT . . . TA . GCACTTATTTC A A TA AT . AG G . T CGTT . . A . . . . . . C . . A . . A G TATTCG . T . T . . . G . . . . C . TTG A G T CT G A . . . . G . . TATG A . . A . . . . T A . . . . . A . . T . . CC G . G C . T C CG TT . . . A A . . A TTTTGT ACA A . G C . A T T . A . . . G . . A T . . . TATTTGC . . . . . T . T . AAG . GG TG T GC T .
blockSeqs : . . ATGTCAG GTAAG . . . . . A . . . . . A . . . . . GCAAGG . . . . . A . T . TCTCAATAGACTGA . . T G . . C . . G . TGAGGTC . A A TT . G C . TTACAATC T . AA TCT CA . . . . ATA ACAC T . . GA AATGACGTTGT A . . TTA . . T . . . . . . A A . . C . A CCTG G TA . AT AA . A CAGAG T . . A G . . . . C . G A C . . CT . . . . . . G T T AG . TT A . . CG . . . A . . T . . . C . . T T A CT T . . . . . A . . TATT A . T . . T . . C . . C . TG C . . A . . G TTT A T . A . . A . C . T . . . . . T . T . A . AG T C A
blockSeqs : GCT . . . . . A . . . . . A . . . . . ACGTGA . . . . . A . T . AATCGATTGGA . . T . . . C . . G . TGCACTG . A T AT . G C . TTACAATT T . AT ACT CA . . . . ATA ACAT T . . GA GTCCTATTTTT A . . TTA . . T . . . . . . T . . . A . A CCTG G TA . AT CA . T CAGAG G . . A G . . . . C . G A T . . C . . . . . . G T C AA . . . . . . . T . . . . . . . T . . TATG T . . . . . G . A . TA A
blockSeqs : GA . . . . . A . . . . . C . . . . . ACAAGG . . . . . T . T . ATATAGAAA . . G . . . C . . G . TGCAGTC . A A C . G T . TCACAATT T . AT CC CA . . . . ATC ACAC T . . GA AATTGTCTTTT A . . TTA . . G . . . . . . T . . . G . A CCA G TT . G G . . AAGCT G . . A G . . . . C . . A C . . C . . . . . . T A C AA . . . TTA
blockSeqs : CG . . . . . A . . . . . A . . . . . ACGAGG . . . . . C . T . ATATAGAAA . . G . . . C . . G . GGCACTT . A . C . G C . TTACAATC A . TT CT CA . . . . ATA AACA T . . A AATAATCTGT A . . TTA . . T . . . . . . A . . . A . A C . . . A G CAG G . . . . . . . . . . . . . . . T . . . . . . T A A .
blockSeqs : . . . . . A . . . . . C . . . . . ATGAGG . . . . . A . T . AATTGAT . . T . . . T . . A . TGCCCTT . A . T . A T . TAAT T . TT CC AA . . . . GA T T . . G AATTGTCTTT A . . TT . . T . . . . . . A . . . A . . . . . . . . . . . . . . . . . T
blockSeqs : . . . . . A . . . . . A . . . . . ATGAGG . . . . . A . T . CATTGAT . . G . . . T . . G . TGCCCTT . . . T . G C . AAT T . CA CT AA . . . . . T A . . . . . . TC . . T . . . . . . G . . . A . . .
blockSeqs : . . . . . A . . . . . . . . . . . ACAAGG . . . . . G . . . ATTGATT . . . . . . T . . G . GCGTC . . . C . . . . . . . T CT TT . . . . . . . . . . . . TC . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . ATGAGG . . . . . G . . . AATCAA . . . . . . T . . G . . . . . C . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . ACAAGG . . . . . A . . . AGACTA . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . ATGAG . . . . . A . . . GAT . . . . . .
blockSeqs : . . . . . . . . . . . . . ATAA . . . . . .
blockSeqCons : GTAG*** A** ** ******* ACGAGG********** TGCNCTT******* C*** G* TCACAATT********** AT CT* ATA T* AATGTCTTTT************ TTA** T***** A****** CCTG*** G** CAGAG*** C* AG* G* CG*** CT****** T* **** TATG*** A**** NG** T**
originalCons : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTCGGTGA-AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-T----A-----GA--G-TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TT--GCAGTG-C----TA---CAAATTATC-T-ATG--CA-GTTT-C--ATTA--TT--TCACAA--------TNGAGGA--TGTGAG-CATATCCTCC----CA----------AA---TTTT-G-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAATG-CTCTG--TTTTCT----CTCTCTGCAGGATGT-GCCAGTA----TT--TCAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTT-AGTTAACAT--CAGATAACAGAAG--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GCTT-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-A-GGATTGT-GTGCACTTTTTC--ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTAC-GTTTTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTTAT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-GG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
finalCons : NNNTTCAAAT-TG-TACAT---ACGTCAAAT-GTC--GAATTGTAG---AA-AAT-AT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA-TACGAGG----------TT--AT-GA---TAT-TGA-A--A-TGATTGA-TTTGA----TT----A-AT-----GA-T---AT-T-TGTTTTTCT--GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTA-TTTGCNCTT-------TA---CAAATTATC---ATG--CAG-TTT-C--ATTA--TTTCACAATT----------GAGGA--TGTGAG-CATATCT-CC----CA----------AA---TTTT-G-TTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAATGTCTTTT------------CTCTCTGCAGGATGT-GCCAGTA----TTTTA--AAAGC-----TTTTGC-TTTAT-----TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATACCCTG---TTTTTG--TTNTTT--GCTTTT-AGTTAACAT--CAGATAACAGAG---TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC-TAT------AGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATC-----GC-T-TGT-TT-TTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTGAG-GGATTGT-GTGCACTTTTTCG-ATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTACG---TTGAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGATCT------TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGAT-TTGTCCGATT-TA---CTGTAGTATG---TTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATGTTT-GTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GCTGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-TNG--CGAGCT--TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTATCATTTTTATGGAAATCAGCTATCAAATATAGCTACACATCAGTTGCTGGAGTCTGCCATATTGCAAGATAAAGTTATCGCTCTTTTTGATATTTCCCACAATATCATCTGGTGATGACGTATACAGGGCAATTATCTCTGAGTGATGCATGATGAGCTTTAATTATTAGCTCCAGCGTCAACCAGTGATTTGGGATGGATTGATGAAAATAGGGAAAATGATGAATCTTTATGCACTTAAGGACAAAGTGACTTTCTTTCAAAGTTTGCATGTTGTTGTCATAATATAAATTTCGGGAAATATAGC
Unaligned ( gi|17 ): GAATATCACATTTGATTTAAAGGGAGCGCAAGGTCAAAAATGATAATTGGTCAATTCAAATACTGCGTTGGTAGCAATTAATTCCACTGGTTATTTTCATCTGATTGTTATCAGTTGTGTAGAAATCAGCTATTAAATACCGCTACACATCAGCTGCTGGAGGCTGCCATTTTGAAAGATGAGAGTTATCGCTCTTTTTGATATTTCCCACAATCCAATCTGTTGATGATGTACAAGAGTCAATTGCCTCTGAGTGAAAGCAGCTGATCATGTCTGACTGCAA
Unaligned ( gi|33 ): ATATGGCTACACATCAGCTGCTGGAGGCTGCCATTTTGCAAGATAAAGTTATCTCTCTTTTTGATATTTCCCATGATACCA
Unaligned ( gi|34 ): TAAACCCATCTGCTGATGATATACAAGGGGCAACTGCTTTCGAGTGAAAGCAGCTGGTCACGCCTGATGGCACCGCAAAG
Unaligned ( gi|37 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Unaligned ( gi|38 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Alignments
lowQualScore : 1 1 444444444444444444444 22222222 1111111 111111 1111111111 44444444444444444 111 1111 22222222222222222222222 2222222222 22222222222222222 11111111 11111 111111 1 1111111 2222222 111111 11 1111 22222222 11 55555555555 1 33333 1 11 1 1 1 1 1 1 333333333 1 1 1 11 111 1 1 2222222222222 11 1 33333 1 111 666666666666666 11 22222222 4444444444 1111 111 22222 1 1 1111 333333 1 22 1 6666666666 1 1 1 1 1 1 1 1 11 1 1 111 11 11 33333 1 1 2222222222 3333333 1 1 1 1 1 1 1 1 1 5555555555555555 2222 1 1 1 1 33333 11 1111 222222 33333 2222222 222 111 1
lowQualScore : 0 0 777777777777777777777 44444444 2 5 33 6 2 6666 555 3 3 888 44 2 5 2222222 111111 8888 2 0 2 8 2 5555 1 3 1111111111 11111111111111111 3 3 9 44 3 555 3 555 3 3 6666 3 55 77 555 555 55 3 55 77 33 0000 55555555555555555555555 0 777 3 9999 3 3 3333333333 7777 88 55 666 77777 77 4 4 1 0 22222222222222222 4 44444444 4 22 4 4 0 5 22222 3 111111 55 4 777 4 4 4 3 4 2 777 4 3333333 4 1 4444444 999 44 66 0 888 8 99 7 0 5 77 3 5 5 1 3 5 5 999999 0 2 5 33 3 0 4 0000 5 77777777 55 5 44444444444 1 1 888 5 5 0 5 6 8 11 3 0 8 0 5 0 11111 8 8 0 3 88 6 3 3 6 6 6 3 3 3 0 0 1 2 999999999 6 5 5 5 7 0 88 777 6 3 3 9999999999999 88 3 33333 0 2 777 222222222222222 11 1 1 0 88888888 88 3333333333 8 7777 8 8 8 222 33333 3 3 1 8888 888888 7 3 00 3 5555555555 3 7 3 3 2 5 1 5 2 0 33 0 0 666 3 0 777 00 2 0 8 0 8 2 22 55 0 33 7 33333 3 3 0 0 1 3333333333 4444444 1 0 7 2 0 0 3 3 7 0 1 0 0 0 6 3 7 1 7 3 6 3 7777777777777777 8888 5 5 1 1 5 3 33333 33 7777 0 1 8 1 333333 0 33333 0 0000000 000 2 77 777 2
lowQualScore : . . ..................... ........ . . .. . . .... ... . . ... .. . . ....... ...... .... . . . . . .... . . .......... ................. . . . .. . ... . ... . . .... . .. .. ... ... .. . .. .. .. .... ....................... . ... . .... . . .......... .... .. .. ... ..... .. . . . . ................. . ........ . .. . . . . ..... . ...... .. . ... . . . . . . ... . ....... . . ....... ... .. .. . ... . .. . . . .. . . . . . . . ...... . . . .. . . . .... . ........ .. . ........... . . ... . . . . . . .. . . . . . . ..... . . . . .. . . . . . . . . . . . . . ......... . . . . . . .. ... . . . ............. .. . ..... . . ... ............... .. . . . ........ .. .......... . .... . . . ... ..... . . . .... ...... . . .. . .......... . . . . . . . . . . .. . . ... . . ... .. . . . . . . .. .. . .. . ..... . . . . . .......... ....... . . . . . . . . . . . . . . . . . . . . . . ................ .... . . . . . . ..... .. .... . . . . ...... . ..... . ....... ... . .. ... .
lowQualScore : 0 0 444444444444444444444 33333333 9 7 99 7 9 1111 000 1 1 222 22 9 7 1111111 111111 9999 9 1 9 6 9 2222 2 1 7777777777 22222222222222222 1 1 2 22 1 888 3 444 3 3 2222 3 66 99 888 333 00 6 00 99 66 7777 11111111111111111111111 5 555 6 6666 6 6 6666666666 7777 55 55 111 77777 44 0 0 6 9 55555555555555555 4 55555555 0 44 0 0 8 8 77777 6 222222 55 0 000 0 0 0 4 9 0 000 0 6666666 4 9 6666666 444 66 99 7 111 4 22 8 7 7 99 0 7 7 4 0 0 0 444444 2 5 0 88 2 2 5 6666 7 44444444 77 7 33333333333 7 0 444 7 7 4 7 0 0 66 2 8 0 8 4 8 44444 0 0 0 2 33 7 3 3 7 7 7 3 3 2 0 0 2 5 000000000 7 5 0 0 3 7 33 777 7 3 3 7777777777777 33 3 33333 0 5 555 222222222222222 00 0 4 8 88888888 66 0000000000 0 0000 0 8 0 444 00000 3 3 0 0000 333333 3 3 77 3 3333333333 3 3 3 3 0 5 0 5 0 0 22 0 0 000 0 2 555 22 5 8 0 6 2 5 88 22 2 88 3 44444 2 2 0 0 2 0000000000 2222222 2 0 0 5 0 2 2 2 0 0 0 0 0 0 7 3 3 0 3 3 7 3 7777777777777777 3333 5 5 0 0 5 3 33333 88 0000 8 4 0 0 000000 8 44444 8 0000000 222 0 88 777 0
consensus : NNNTTCAAAT-TG-TACAT---ACGTCA-AAT-G--TC--GAATT--GT--A-GAAAATAT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA------TA----CGA-GGTT-AT-GATAT-TGAA--A-TGATTGA-TTT---GA----TTA-A-T-----GA-T---AT-T-TGTTTTTC--T-GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTATTTG-CACT--CTA---CAAATTA--TC-A--TG--CA-GTTT-C--ATTA--T-T--TCAC--AATC------GAGGA--TGTGAG-C--ATAT-C-TCCCA----------AA----TTTT-GTTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAAT-GTC----T-----TT-TCTC--------TCTG-CAGGATGT-GCCAGTA-TTTTAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTT-AGTTAACAT--CAGATAACAGA-G--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC------TATAGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATCGCTT-G------T-TTTTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-AG-GGATTGT-GTGCAC-TTTTTCGATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTACG-T-TT-GAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGATTTGTCCGATTTACTGTAGT-AT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATG-TTTGTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GC-TGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-AG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
Reference ( family-1976 ) : NNNTTCAAAT-TG-TACAT---ACGTCA-AAT-G--TC--GAATT--GT--A-GAAAATAT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA------TA----CGA-GGTT-AT-GATAT-TGAA--A-TGATTGA-TTT---GA----TTA-A-T-----GA-T---AT-T-TGTTTTTC--T-GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTATTTG-CNCT--TTA---CAAATTA--TC-A--TG--CA-GTTT-C--ATTA--T-T--TCAC--AATT------GAGGA--TGTGAG-C--ATAT-C-TCCCA----------AA----TTTT-GTTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAGAAGAAAAT-GTC----T-----TT-TCTC--------TCTG-CAGGATGT-GCCAGTA-TTTTAAAAGC-----TTTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTNTG-TG---AC-AAAAA------CGAGGGG-TATAC--CC-TGTTTTTG--TTNTTT--GCTTTT-AGTTAACAT--CAGATAACAGA-G--TGGCTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCAC------TATAGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATCGCTT-G------T-TTTTCTC--ATA-TG-----------TCGTATGGCTTCNCCTTTGATAAATCCCT-T-AAAACTG-AG-GGATTGT-GTGCAC-TTTTTCGATCCAAATAT-TGGAAATGTATTGGTAGGTTTGATGTACG---TT-GAA-ATCCAGGAT-TCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAA-GTGCATTTCATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CGCT-ATAGTGAA--TA--TCGTGAATTTCTTTTTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCCGCACGGTACGTTATGCGATGTTTACTCGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCGCA-TACAGAT--GGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTCAA--TT----------AAAAN-TATTGTTTTCCAAAATTAATCTNAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TT-AATT----GCA-TAGACGGATTTGTCCGATTTACTGTAGT-AT--GTTTGTACTGCA----GTAATTAATTCCTCAAACTGC-ATG-TTTGTGTAGAGTGATGTNACACCATAG-CTGAC------AAACATTC-GC-TGTT-GGTCTCAAGT---------CTCTCGATT-TTGGTGATAA-AATCAGAGCTATC-CCTGATGGAAGTGCTTAATTTTTGCACTATANGTGTCAGAAAAATAATCAGCATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCCTATCTGAGAA---ATGG-GTCGCCCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTCGATTTCATGA--AAAACGTCTAGGTC-AA--TTGGGCAGAAGATATAATCTGCCT-AGCC-TCGTATTATGGTGC-T-T---TG-TGTAA-G-AA--TAATA-TGTAGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGNCTTG-TAA-TTGG-ACAGCTGAGAATAGTA-ATGTATTNGGAATTTAGCTGT-CGTTCTCCTTC-TTAATATAATCA-ATTTGGCTGA----CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTGGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTTAGCGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTNGTACGGGATGGATGAATNTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGACAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-GNAC------TTTAGCAA---CTGTGTTTTCGTGC-T-NG-CGAGC-T-TTTTGTTTAATGCTCCGCGTTTTATACGCAAAGA-T-TAGCGTCCCGATCGAAACGCCTGGCCATT
gi|1 : TTCAAATCTGATACATTGCACATTA-AAT-G------GAATTTAGT--G-AAAAATATTATGGCCC--ATGCA--GCCACGCAC-TCACAAAC-CACTT----GACTC---T-ACAGCTAAGTTTAAAAGTGTTT-CGGCGTGTATCAGACGTGA------TA-----GA-G-TT-AT-GATAT-TGGA--A-TGATTGA-TTT---GA----TTA-A-T-----GA-T---AT-T-TGTTTTTC--T-GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTATT-G-CAGTGACTA---CAAATTA--TCTA--TG--CACGTTT-T--ATTA--T-T---CAT--A-TA------GAGGA--AG-GAGAC--A-AT-CCTCCCA----------AA----TTTG-GTTGC--GTATAT-TCAGAA-GATATG--A-TT-ACAGAAGCA-----------T-----TT-TATT--------TT---CA--AT-T-GC-AACA-TT--AAAA-------TTATGCGTTTA----TGTTTTCGAA--TC-TCGC---GGT-TG-T-ATTATG-TG---AC-AAAA-------CGAAAGG-TA-AC--C----TTTTTGACTTCTTT--A--TAC-AGTCAAGAT--CTACTAGCAGAAG--TGGCTCGATC-TA-GTTA-TTCAATACCA--TTGT-AAGTTT-GATTG--TTCATAATCAC------TATAGCCTCTCTTTCGAAAGTTGGTTT-GAAAT-CG-TTAAGAATTTCTTGAAA-----ACGTCTGAATTGCTTTG------T-GTTTCTC--AAAATG-----------TCATATGGTTTCTCCTTTGA-AAATCCCT-T-AAAACTG-AG-G-ATTGT-GTGCAC-TTTTTC-ATCCAAATAT-TGGAAAGGTAT-GGTAGGTTTGATGTACT---TTTGAA-ATCTAGGATATCGATTTGCTTCAAATTC--ACTTCCCTTGTACA-CTGTAGTGTCTAAAAAGTGCATTTCATTCAC--GAATTTCA-TATTGTGAATTTAAGCAATTG-TGAGCAGAAAT-CGCT-ATAGTGAAAATA--CCATGAATTTCTTTTTCTTCACCATTGAATATAATGAA-CCATCATCACGATAACGCCGCACG-TACGTTATGCGATGTT-ACTTGGAA--ATTGGTTTATAAT-TTCCTCGGTTATCCTGATGTAGTCCTGATATCACAATACAGAT--GGAGCATTTCAGAAC-CCCATTAATAGCACAATC--ATGATCT---GTTTATAAACTTTTGAATTCAAATTC----------AAAAA-TATTGTTTTCCAAAAGTAATCTGAG-AGATAGCTCAGATGC-T----TTAATTTGATGGTAT----------TT-GTTTTAAGGCAGTAGACGGATTT-TCCGATTTACTGTAGTTATTTATTTGTACTGC-----GTAATTAATTCCCAAAACTGCGATG-TTTGTGTAGAGTGATTTGACATCATAGTCTGACCAATTAAAACATTCCGC--GTT-AGTCTCAAGC---------TTCTCGATTATGGGTGATAAGAATCAGAGCTATCGCCTGATG-AAGTGCT-AATTTTTGCACTATATGTGTCAGAAAAATAAGCAACTTAGCTGACTGATCTTT--CCGTGTGGCGTCGCCTATCTGAGAA---ATGATGTCGCCCCGCCGGAAAATACTGCCGAAACGCAGCAACAATTAC--TTGATTTCATGAGAAAAACGTCTAGGTCCAA--TTGGGCAGAAGATATA-TCTGCCT-AGCCATCGTTTTATGGTGC-T-T---TG-TGTAAAG-AAGATAATACTGT-GTATCATCCAACACACCCTGCCATTTTCAT-TTTGAGAGTTTTTCTTG-ATTAATTTT-ACAAGATTTTGTGACTTGGTAAATTGGGACAGCTGAGAATA-TA-ATGTATTGGGAATT-AGCGGTACGTTCTCCTTC-TTAATATAATCA-ATTTGGCTAA-----GCATAATAACGCA----CATGTTGTTTTTATCGGCGTTCTTGATTATGATATCTTTGCATTTTCTTGGATCTATCAAAGACTGCCGTTCAGAATTACTTAAATTGTCGTGAATTTTTAACGTTTGCATAGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAA-TCCGCTATTTGTACGGGATGGATGAATCTTGTTGTCTTCAGTAGTATCTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATACAA-TAAC------TTTAGC-A---CTGTGTTTTCGTGC-T-AGCCGAGCGT-TTTTGTTTAATGCTCTGCGTTTTCTACGCAAAGATT-TAGCGTTCCGATCGAAACGCCTAGCCATT
gi|10 : aacAATTAT-ATGGCTCCAAT-CTTTGCCATGTACTACA-CAAT-TACTT----GACTC---TGACA-CTA---TTAA--GTGTTTCCGGCA-GTC------GTGA------TAT---TGAGGGTT-AT-G-TATCTGAATGA-TCATTAA-TTT---G-----------------GA-T----------TTTTTC--T-GCAAGCGAAATTT-CT--ACCTCA-TCAGG-G--ATTCTATTTG--ACTA-TTA---C-AATTA--TC-AGGGG--CA-ATTT-CATATTACTT-T--TTAC--AATC------AAGGA--ATTGAA-C---TAT-C-CCCCATATGTTCTTTAA----TTTT-GCT-C---TTTG-ATG-------TAGGT-AGGA-ACTGGGGGAAAT-AAT----C-----TG-TCTC--------TCTA-CAGGATGTGGCCAGTA-TTTT-AAAGC-----TT-----------------------------CAG---GTTATG-T-AATTTGTTG---AC-AAAAA------CAAGGGGATATACAGCTGTGTTATTG--TTCTTT--g
gi|11 : gaacA-AAT-G--TC--GAA-T--GTA-A-GAAAATAT-ATGGCTCCGAT-CA--GCCACGTACCTC-ACAAT-CACTT----GACTC---
gi|11 : acccagtaacgttttagacaatgcgtccaagattgttaacggACGT---ACCTCACAAT-CACTT--GACTC--GTTGA-GAAAATAT-AGGGCTTCGAT-CA--GCCACGTACATCA-CAAT-CACTT----GACTC---T-ACA-CTAA--TTAA--CTCTTT-CGGCG-GT-------GTGA------TG----CAA-GGTT-AT-GATAT-TGAA--A-TGATTGA-TTT---GA----TTA-A-TCAATCGA-TTG-ATGT-TGTTTTTC--T-GCATGCAAA---T-CC--GCCCAA-TCA-G-G--AGTCTATTTG-AGGT--CTA---C-AATTA--TC-A--TG--CA-ATTT-C--ATTA--T-T--TTAC--AATT------GAGGA--TGTGAG-C--ATAT-C-TCCCA----------AA----TTTT-gttgagaaaatatagggcttcgatcagccacgtacatcacaatcacttgactctacactaattaactctttcggcggtgtgatgcaaggttatgatattgaaatgattgatttgattaatcaatcgattgatgttgtttttctgcatgcaaatccgcccaatcaggagtctatttgaggtctacaattatcatgcaatttcattattttacaattgaggatgtgagcatatctcccaaatttt
gi|12 : acccagtaacgttttagacaatgcgtccaagattgttaacggaaatgtcgaatgtaagaaaatatatggctccgatcagccATAATCAGCATA-CTGACTGGTCTCTT-CCGTA-GGCGT-G--TATCTGAAAA---ATGG-GTCGCCCCGGTGG----TA-----GAA-----------ATTAGGT-CAATTTTATGA--AA----------TC------TGAGCAGAGGAT-CAATCTGCTT-AGCC-TCGTATTATGGTGC-T-T---T----TAA----A--TGGTA-TGTAGTATCATCAAGCACACT-----ATTTTCACATTTGAGAATTTTTCTTGTCTTAATTTTCACAAGATTGTGTGTCTTG-TAA-TTAG-ACAAATGAGAATAGTACATGTATTTGGAATTTAACTGT-CTTTCTC---C-GTAATGTAATCA------GCTGATTTTCGCATGATAACACACAGTCATATTGTTTTTATCGACTTT
gi|13 : gatcTACTCGTAAGTATTTTTGTACAATAT-CCTTG-TCCTC-TGATGCAGTC-GGTTATCG------------------TTTAG--ACTCC-----ATAGCACA-TCCAGTGATCT---GTATGTAAATTTTTAAATTCAA--TT----------GAAATGTATTATATTCCAAAGTTAATCTCAGGAAAAA--TCATAT----------------AT----------------T-AAAT----GCA-TACATATATCTGTCCGATTTACTATAGT-AT--ATTTCTACTGCA----GTAAATGATTCTTCAAATTGT-ATGTTTTGTGTAAAAAGATGTTACACCATAG-CTGAC------AG----TC-GCTTTTT-GGTCTCAAGTACAATCAAACCCTCGATT-TTTGTAATAA-AATCTGAGCTATC-TCTAATGGAAGTataaattccga
gi|15 : -G--AGTCGATTTG-CACT--GTA---CAA-TTA--TC-A--TG--CA-GTTT-C--ATTA--T-T--------------------------GCGAG-C--AGAT-C-CCCCA----------AA----TTTTTGTTGC--GTTTATATGACAC-GATAGGT-A-GA-ACA-AAGAAAAT-GACG---T-----TG-TCTC--------TCTG-CACGATGT-ACCAGTA-TTTCAAAAGC-----TCTTGC-TTTA----T-TTTTCGAA--TT-CCAG---GGT-TG-T-ATTTTG-TG---AC-AAAAC------CGAGGGG-CATAC--CC-TGTTTTT---T---------------GTTAACAC--CAGATAAC--A-G--TGGCTCGATCATATACTACTCAATTACTAGGTTAT-ATGT
gi|16 : --A-GAGAAAAA-AAGGCTCCGAT-CA--GCCACGTACCTCA-CAATTCACTT----GACTC---T-ACA-CTAA--TTA---GTGTTT-CG-CG-GT-------GTGA------TA----CGT-GATT-AT-GATAT-TGAA--A-TGATTGA-TT----GA----TTA-A-TT----GA-T----T-T-TGTTTTTC--T-GCATGCAAA---T-C---GCCTCA-TCA-G-G--AGTCTATTTG-CAGT--CTA---CAA-TTA--TT-A--TG--CA-GTTT-T--ATTA--T-T--TCAC--AATT------GAGGA--TGTGAG-C--AAAT-C-TCCCA----------AA----TTTTGGTTGC--GTTTATATGACAC-GATAGGT-A-GA-ACAAAgtgtaatttaccagatcatagatctttttctgtttgaa
gi|18 : cctgaacagtttcaaaccggctaaagtcttagtagagtgaa--A-GAAAATCT-ATGGCTCCGAT-CA--GCCACGTACCTCAACAAT-AACTT----TATTC---T-GCA-CT-----TAA--GTGTTT-CGGCT-GA-------TTGA------TA----CAA-GGTT-AT-GGTAT-TGAA--T-TGATTGA-TTT----A----TCA-A-TC----GA-TTGGAT-T-TTTTTTTC--T-GCATGCAAA---T-CC--GCCTCA-TCA-G-G--AGTCTATTGG-CACT--TTA---C-AATTT--TT-A--TG--CA-GTTT-C--ATTA--T-T--TTAC--AATC------GAAGA--TGTAAG-C--ATAT-C-CCCTAGGAT------AAAATTTTTT-GTTGC--GTTTATATGACAC-AATAGGT-A-GA-ATAG
gi|19 : --A-GAAAATAT-ATG-CTTCGTT-CA--GCCACGTACTTCAACAAT-CACTT----GATTG---T-ACA-------TTAG--GTGTTT-TGGTG-GT-------GTGA------TA----CGA-GGTT-GT-GATAT-TGAA--C-TGATTCA-TTT---GAGTTGTCA-A-T-----CA-----AT-TGTTTTTTTC--T-GCATGCAAA---T-AC--GCCTCA-TCA-G-A--AGTCTATTTG-CACT--TTA---C
gi|2 : cattaacccccatccccacaatcacgcattttaacgcataatctgtttcctcacaatcacgcacttagtaATCAC------TATAGCCC-TCTTTCGAAGGTTGGTTTTGAAAT-CG-TTAAGAATTTCTTGAAAT----ACGTCTGCATTGCTT-G------TGTTTTCTC--ATA-TG-----------TCGTATGGTTTCTCCTTTGATAAATCCCTAT-AAAACTG-AG-GGACTGT-GTGCAC-TTTTTCGATCCAAATAT-TGGAAA-GTATTGGTAGGTTTGATGTACGTT-TT-GAA-ATCTAGGAT-TCGATTTGCTTCAAATCT--ACTT-CCTTGTACA-TTGTAGTGTCTAAAA-GTGCATTT-ATTCACCGAAATTTCA-TAT-GTGAATTTAAGCAATTGATGAGCAGAATT-CTTT-TCA---AA----------GAATTTCTTTCTCTTCACCATGGAATATAATGAAACCATCATCACGATAACGCC-CATGGTACGTTATGCGATGTTTACTTGGAA--ATTGGTTTATAAT-T-CCTCGGTTATC-TGATGTAGTC-TGATATCACA-TACAGATGGGGAGCATTTCG--AC-CC-----ATAGCACA-TCCAATGATCT---GTTCATAAACTTTTGAATTAAA--TTCAAAAATTCAAAAAA-TATTGTTTTCCAATATTAATCTGAGGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGTA---------TT-AATT----GCA-TAGACAGATTTGTCCGATTTACTGTAGT-AT--GTTTGTACTGCAGTACGTAATTAATTCCTCAAACTGC-ATG-TTTGTGTAGAGTGATGTAACACCA-------AT------AAACATTC-GC-TGTTAGGTCTCAAGT----------TCTCGATT-TTGGTG-TAA-AATCAAAGCTATC-CCTGATGAAAGTGCTTAATTTTTGCACTATAGGTGTCAG-AAAATAATCA-CATA-CTGACTGATCTTTT-CCGTG-GGCGT-GCC--------------TGG-GTCG-CCCGCCGGAAA-TACTGCCGAACTGCAGCAACCATTACGTTTGATTTCATGA--AAAACGTCTAGGTC-AATTTTGGGCAGAAGATATAACCTGCCT-AGCC-TCGTATTATGGTGCTT-T---TGTTGTAA-GAAA--TAATA-TGTGGTATCATCAAGCACACCCT-CCATTTTCATATTTGAGAGTTTTTCTTGTATTAATTTT-ACAAGATTTTGTGACTGG-TAA-TTAG-ACAGCTGAGAATAGTA-TTCCA--AGGCATTTAGCTGT-CGTTCTTCTTCTTTAATATAATCATATTTG---------CGCATAATAACGCA----CATGTTGTTTTTATCGGCTTTCTTGATTATGATATCTTTGCGTTTTCTTAGATCTATCAAAGACTGCCGTTCGGAATTACCTAAATTGTCGTGAATTTTT-GTGTTTGCATGGACGACAATTCAAGTTTGGTTTTGTCAATGTACGTTTGAATTGGTTCTATATGAGTCTCTGGCTCAAAATCCGCTATTAGTACGGAATGGATGAATATTGTTGTCTTCAGTAGTA-CTATGAAATAAAAATCTGCATTTCAGTTTTCTGGCAAATTCATTAAAATCTCGCATCAGAAGAGTTTTTGAATTTCTGATGAATGGAGTAGGTATGAATTTCAGTCCTTTAGTTAGTAAAAGG-AATT-----CATCATCCGATAATTTATCT--GATGTGAGATTAAATACA----TGTTCTCTACATGCAA-GAAC------TTTAGC-A---CTGTGTTTTCGTGC-TAGG-TGAGCTT-TTTTGTTTAATGCTCTGCGTTTTATACGCAATGA-T-TAGCGT-CCGATCGAAACGCCTGGCCATT
gi|20 : AT-TG-TCCAC---ATGCCA-TATTG--CG--GGATT--GC----TAAGATAT-ATGACTCCAGT-TA--GCCACATACCTCAACAAT-CACTT----TACTC---T-ACA-CTAA--TTAA--GTGTTT-CGGCG-GT-------GTGA------TA----TGA-GGTT-AT-GCTAT-TGAA--A-TGATTG
gi|21 : atgtcatatttttcatgtGCACA-TCCAATAATCTACAGTTCATAAATTTCTGAATTCAA----------------AAT-TGTTATTTCCCAAAATTAATCTTAGGAGAAAGCTT-GAC-CGTCATGTTAGCG-AATGGTGTGTTAGAACTGTT-AATT----GAA-TGGACAGATgcagtgcttaaatcggcgattgatttctt
gi|22 : TGAATT-C---TAAGAATTTCTTGAAATTAGTACATGTCCATCATTT-GGGTTTTT-TTTTCTC--ATA-TG-----------GTATATGGTTTTATTTTCAATAAATCCCT-T-AAAATTG-AT-GGATTAT-G-----------CGTTCCAAATAG-TGT-AATGTGTTTGCAA----GATGGA-----TT-AAATATCCAGGAT-GCGAGCTGCCTCAAAagtatgctattctaacgctgtatttatttgcatgagtccaaaatcaaat
gi|23 : G--CA-GTTT-C--ATTA--TAT--T-----AATT------A-------------C--A-AT-C----------------AA----TTT--GTTGC--AGTTATATGACAT-GATAGGT-A-GA-ACAGA-GAAAAC-GTC----TGAAATTTGTCTC--------TCTG-CAAGATGT-GCAAGTA-TATTAAAAGC-----TTTTGT-TTCA----T-TTTTCAAA--TT-CCAG---TGT-CATT-ATTA-A-TG---AC-A
gi|24 : ATAACAGA-G--TAACTCGATCGTA-GTTA-TCAAGTACCA-CTTGT-ATGTTTTGATTGATTTCATAATCACTATTAGTATAGCCCCTCTTTCGAGGGTTGGTTTTGAAAT-CG-CTAAGAATTTCTTGAAAT----ACGTCTGCATTGCT
gi|25 : TCACCCGACAATTGATCT--GATTTGAGATTAAGCACA----TGTTCCCTATATACAATGTACAATCAATTTAGC-A---CAGTGTTTTCGTG-----G-CGAGC-TGTTTTGTGTAATGTTCTGCGTTTTGCAAGCAA
gi|26 : CCTTTAGTTAGTAAAAGGTAATTCTGTACATGATTGTACAATGTATATACGACGTGAGATTAAACACAACTGTGTTTTC----------GTAC------TTT-GCAAG--CTTTGTTT---TGT-T-AG-TTTGT-T-TTTTGTT
gi|27 : TTAAATACG----TACTCTCTGTATACAA-GGAC------GTCAGCAATATTTATGTTTTTGTACTT-TA-CAAGC-A-TTTTGTTTAATGTTCCACTTTTTA-ACACAAAGA-TATAACATCCCCATCAAA
gi|28 : -AGAATTGCAGAGGATTTT-GAGCAC-TTTAGCAATCCAAATAT-T-GAAATGAGTTGTTGAGTTTAATGTATAGTTTT-AAA-GTCCA
gi|29 : acTA-CTGGCTGATTTTTTTCCGTA-GGCCA-GCTTATCGGAGAATTTATAC-ATCACCCCGATGAAAA-TACGGGAGTATTGTAGCAACCACTGTGTTTGATTTAATGA--AAtaaagttaacggtgtaaaatatatttcctt
gi|3 : actAGAATAT-ATGGCTCCGATTCA--GCCACGTACCT--ACAAT-CACTT----GACCC---G-A-G-CTAA--TTAA--GTGTTT-CGGTG-GT-------GTGA------TA----TGA-G-TT-AT-GATTT-TGAA--AATGATTGAATTT---GA----TTC-A-TT----GA-T------T-TGTTTTTC--T-GCATGCAAA---TTCC--GCCTCA-TCA-G-G--AGTCTATTTGGCAGT--CTA---CAA-TTA--TT-A--TGG-CA-GTTT-T--ATTA--T-TGTTCAC--AGTG------GAGGA--AGTGAG-C--ATAT-C-TCCCA----------AT----TTTC-GTTGA--GTTAATCTGACAC-GATAT-T-A-GATACA--AGAA----GTCCTATT-----TT-TCTT--------TCTG-CAGGATGT-GCCAATA-TTTC-AAAGC-----TTTAAT-TTTA------TTTTCGAAATTC-CCAG---GGT-TG-T-ATT-TG-TG---ACAAAAAA------CGAAGGG-TATAC--CC-TGTTTT-------TTT--GCTTTT-TGTTAACATCACAGATAACAGA-G--TGGCTCGATCTAA-GTTA-TC-AGTA-CA-CTTGTAATG-TTTGATTGATTTC-TAATCACT-----TATAGCCCCTCTTTCGAAGGTTGGTTTTGAAATGCGATTAAGAAATTTCTGAAAT----ACGTCTGCATTGCTT-GTGT---T-TCTTCTC--ATA-TG-----------TTGTATGGTTCCTCCTTTGATAAATCCCT-TAAAAACTG-AG-GGATTGTAATGCACTTTTTTCGATCCAAA-ATATGGAAA-GTATTGGTAGGTTTGATGTACG---TT-GAA-AT-CAGGAT-TCG-TTTGCTTCAAAGTCTAACTTCCCTTGTACACCTGTGGTGTCTAAAA-TTG-ATTTCATTCACCGAAATTTCAGTAT-GTGAATTTAACAAATTGATGAGCAGAATTCCGCTAAAAGTGAA--TAT-TCGTGGATTTCTTTTTCTTCA-CATGGAATATAATGAA
gi|30 : tga----T-----TG-TCTC--------CTTGGC--GATGT-GCCAGTA-TT----AATCA----TTTTAC-TT------T-TGCTAGAA--TT-CAAG---AAT-TG-T-ATATGG-TG---AC-GAAAG------CAAAGAG-TATAT--CC--ATTTTg
gi|31 : gGAGATAGCTCAGAT-C-T----TTAATT-GATGGTGT----------TTTAATT----GCA-TAGACGGATTTTTCCGATTTACTGTAGT-AT--TTTTGTACTGCA----GTAATTAATTCC
gi|32 : --TTGGGAAGAAGATATAATCTGCCCGAGCC-TCATGCAATGTTGC-TATAGATG-TGTAG-A-CA--TTATA-TCTAATATTATCAAACAAACCCT-CTA
gi|35 : aagtCCA-CTTGT-ATGTTTTGATTGATTTCATAACCAC------TATAGGCCCTCTTTCAAAGGTTGGTTT
gi|36 : TCATATCTAAGAGTTTT-CTTGCATTAATTTT-ACACAAATTTGTGTCTTG-TGA-TTGG-ACAG
gi|39 : AATTGATGAGCAGAATT-CGTG-ATAGTGAA--TAACTCATGAATTTCTTTTTCT
gi|4 : ATT--GT--AAGAAAATAT-ATGACTCCGAT-CA--GCCATGTACCTCA-TAAT-CACTT-------------------------TAA--GTGTTT-TGGCG-GT-------TTGA------TA----TGA-GGTT-AT-GATAT-TGAA--A-TCATTGA-TTT---CA----TTA-A-TCAATGGA-TTGGCT-T-TGTTTTTC--T-GC
gi|4 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatg-----TTTTGC-TTTA----G-TTTTC-AA--TTACCAGCTGGGT-TG-T-ATTTTG-CG---AC-CAAAA------CGAGGGG-TACAC--CC-TGTTTTTT--TTTTTTTTGCTTTT-A-TTAACAT--CAGATAACAGA-G--TGGGTCGATCGTA-GTTA-TCAA-TACCA-CTTCT-ATGTTTTGATTGATTTCATAATCAC------TATAGCCCCTCTTTCGAAGGTTGGTTTTGAAAT-CG-ATAATAATTTCTTGAAAT----ACGTCTGCATTGCTT-G------T-GTTTTTC--ATA-TG-----------TCGTATGGCTTCTTCTTTGATAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttttgctttagttttcaattaccagctgggttgtattttgcgaccaaaacgaggggtacaccctgttttttttttttttgcttttattaacatcagataacagagtgggtcgatcgtagttatcaataccacttctatgttttgattgatttcataatcactatagcccctctttcgaaggttggttttgaaatcgataataatttcttgaaatacgtctgcattgcttgtgtttttcatatgtcgtatggcttcttctttgataaatacaa
gi|40 : ctatcagtgtctttatttgttagatgtgttgtccatttttttcaatgaaaatttgctatgattgtaagaaaatatatgactccgatcagccatgtacctcataatcactttaagtgttttggcggtttgatatgaggttatgatattgaaatcattgatttcattaatcaatggattggctttgtttttctgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntCCGAATTACTGTAGT-AT--GTTTGTACTGCT----ATAACTAATTCTTCAAACTGacaa
gi|41 : TC--------TTTG-CAGCATGT-GCCGGTA-TCTTAAAAAC-----TTTTAC-TTTA----T-TTTTCGA
gi|42 : CCGCCGGAAA-TACTGCCGAACTGCAGCAAC
gi|5 : AATAT-ATGGCTCTGAT-CA--GTGACATACTTCAATAAT-CACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA------TA----CAA-GGTG-GTAGAGAT-T-AA--G-TAATTGA-TT-----A----CTATA-TA----GA-A---AT-T-T----TGC--T-GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTCTTTG-CCCT--TTA---CAA-TCA--TC-A--TG--CA-ATT----------------------AAT-------GATGA--TTTGAG-C--TTATTC-TTAAA----------AA----AATT-ATTGC--ATTT--------T-GATAGGA-A-GA-TCCGAAAAAAATTGTC----T-----TT-TCTC--------TCTG-GAGGATGT-GCCTGTA-TTTTAAAAGC-----TTTTGT-TTTA----T-ATTTTGAA--TT-CCAG---GGG-TG-T-A-TATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTT-ATTT-GCAT--CTGATAAAAGC-T--TGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT------CAAAATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATCGTTT-G------C-TTTTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTG-AA-GGATTAT-
gi|6 : aatTCAAAT-TG-TATAT-----GT-----T-G--TCAGGAGTT--G-----AAAAATAT-ATGGTTCCCAC-CA--GCCATGTACCTCAACAAT-CACTTAATTGACTGATGT-ACA-CTAA--TTTA--GTGTTT-CAGCG-GT-------GTGA------TA----TGA-GGTT-AT-GA--------------------------GA----TTA---------GACT---AT-T-T-TTTCTCTAT-GCATGCAAA---T-CT--GCCTCA-TCG-G-G--TGTCTACTTA-CAAT--TTA---T--ATT---------TG-------TT-C--ATTA--T-T--a
gi|7 : taaggtgaatgtaaggtcaaatatgataattgcgtgtttcaaatacttaattgttagcaattaatgcaactagttatgtccatctaattgttatcagttatgtagaaattcagttattaaatataactacacatcagctgctggagactgccattttgcaagaaaaaagtttctttgatatttcccacaataccatctggtgatgacgcatgggggggggggcatttggctctgtgtgacgagctttaattactagctgaagcttcaactggaaataccagtgatttacgattgattgaaaatgactgagggaatgataaaacttcatgcacttgtgacatttttgAATAT-ATGGCTCTGAT-CA--GTGACATACTTCAATAAT-CACTC----AACTC---T-AAA-CTAC--TGAA--GTGTGT-TGGCG-AT-------GTGA------TA----CAA-GGTG-GTAGAGAT-T-AA--G-TAATTGA-TT-----A----CTATA-TA----GA-A---AT-T-T----TGC--T-GCATGCAAA---T-AT--GTCGTA-TCA-G----AGTCTCTTTG-CCCT--TTA---CAA-TCA--TC-A--TG--CA-----------------T--T-----AAT-------GATGA--TTTGAG-C--TTAT---TCTTA----------AA----AATT-ATTGC--ATTT--------T-GATAGG--A-GA-TCCGAAAAAAATTGTC----T-----TT--CTC--------TCTG-GAGGATGT-GCCTGTA-TTTTAAAAGC-----TTTTGT-TTTA----T-ATTTTG-A--TT-CCAG---GG--TG-T-A-TATGATA---AC-AAACA------CAAGAGG-TAT---------TTCCTG--TTATTT--GCTTTT-ATTT-GCAT--C---TAA-AAA-GCTTGGCTCAACTGTA-ATTA-TCAAGTGCTA-CTTGT-ATGTTTTGATTGATTTTATTATCTT------CAAAATCTTTTTTT----------TTTTTAAAT-C--TT--GAAGTT-----AGT----ACATCTCCATCGTTT-G------C-TTTTCTCTAATA-TGGCACTTATTTCTCTCATGGCTTCACTTTTAATAATTCCCA-C-AAAACTG-AA-GGATTAT-cttga
gi|8 : aaatTTCAAAT-TG-TACAT---ATGTCA-G----------GAGTT--C-----GAAAATAT-ATGGCTCCCAC-CA--GCCATGTACCTCAACAAT-CACTT----GATTC---T-ACA-CTAA--TTAA--GTGTAT-TAGCG-GT-------GTGATATAATTA----CGA-GGTT-ATGGGTCA-TGAG--A-T--TTGA-TTTCTCAA----TAG-ACT-----GA-T---TT-T-TTTCTCTC--C-GCATGCAAA---T-CT--GCCTCA-TCA-G-G--GTTTTAT
gi|9 : ttttgttgtttttttttttagaaatcagctacacatcagctgttggaggctgccaatttgcaagaaaaagttatggctcttttttgtatttcccacaatgtcatctggtgatgacgcatcagaggcaactgcctctcagcggtgagcattaattattagctgcagcttcaactgaaaataccagtgatttgggatggattgatataaatgacagagaaaaataaaacttgatgcacttgtggacattgtgacattttTT-CAGCGAGT-------GTGAC-----TAATCGCGA-GTTTCAT-AATGT--GAG--A-TGATTGG-TTT---GA----TTA-T-T-----GA-T---TT-T-GGTTTTTC--TGGCATGC-AA---T-CCCAGCATCATTCA-GTGACAGTCTA-TTG-CG-T--CTAAACCAAATTACTTA-A--TGCCCA-GTTTGCTAATTA----T--TCACAAAATTTTTGTAGAGGATGTGTGAG-CCAATA--C-TTCTT----------AA----TTTG-GTTGCGGGTTTATATGA-ACAGATCGGTCA-GA-ACAGAGAAAAGT-CTC----T-----TT-TTCCTGTTCTTTTCTG-C-GGATGT-GCCAATAGTTTTTTCAGCCTTTTTTTTGC-TTTAAATGT-TTTTCGAA--TT-CCAG---GGT-TG-TAATTGTG-TGTGAAC-AAAAAACAAACTGAGCGG-TATAC--C-----TCTTG--TTTTTT--GCTTTTGAGCTCACag
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTATCATTTTTATGGAAATCAGCTATCAAATATAGCTACACATCAGTTGCTGGAGTCTGCCATATTGCAAGATAAAGTTATCGCTCTTTTTGATATTTCCCACAATATCATCTGGTGATGACGTATACAGGGCAATTATCTCTGAGTGATGCATGATGAGCTTTAATTATTAGCTCCAGCGTCAACCAGTGATTTGGGATGGATTGATGAAAATAGGGAAAATGATGAATCTTTATGCACTTAAGGACAAAGTGACTTTCTTTCAAAGTTTGCATGTTGTTGTCATAATATAAATTTCGGGAAATATAGC
Unaligned ( gi|17 ): GAATATCACATTTGATTTAAAGGGAGCGCAAGGTCAAAAATGATAATTGGTCAATTCAAATACTGCGTTGGTAGCAATTAATTCCACTGGTTATTTTCATCTGATTGTTATCAGTTGTGTAGAAATCAGCTATTAAATACCGCTACACATCAGCTGCTGGAGGCTGCCATTTTGAAAGATGAGAGTTATCGCTCTTTTTGATATTTCCCACAATCCAATCTGTTGATGATGTACAAGAGTCAATTGCCTCTGAGTGAAAGCAGCTGATCATGTCTGACTGCAA
Unaligned ( gi|33 ): ATATGGCTACACATCAGCTGCTGGAGGCTGCCATTTTGCAAGATAAAGTTATCTCTCTTTTTGATATTTCCCATGATACCA
Unaligned ( gi|34 ): TAAACCCATCTGCTGATGATATACAAGGGGCAACTGCTTTCGAGTGAAAGCAGCTGGTCACGCCTGATGGCACCGCAAAG
Unaligned ( gi|37 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA
Unaligned ( gi|38 ): CTGCTAGTGCTCATTCAATAGCTGGTATGTATTGCAATATTTTCAATAAAAATAAA