lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111111 11111111111 4444444444444444444 1111111 11111 1 22222222222222 22222222222222 11111 22222222222222222222222222222222222222222222222222222222222222222 11 11111111 222222222 111111 1 111111 111111 2222 111 11111111111111 111 3333333333333333333 1111111 1 4444444 1 6666666666666666 11111
lowQualScore : 3 4 6 3 3 888888 999999 3 99999999 2 4444444444 2 6 2 2 44444444444 8888888888888888888 8888 5 2 9 77777 2222222 0 2 0 5 99999 44 3 3 6 3 555 3 77777777777777 3 3 3 3 44 77777777777777 44 88888 66 6 00000 5 4 4 55555555555555555555555555555555555555555555555555555555555555555 99 77 3 4 44444444 999999999 000000 55 6 88 6 9 777 000000 3 3 99999 7 999999 66 6 5 0 777 4444 44 3 3 3 3 6 8888888 2 777 22 88 2 333 4444 6 3 1 44444444444444 66 777 0 2 0000000000000000000 5555555 5 0 8 6666666 5 3 4444444444444444 8888 77777 44 44
lowQualScore : . . . . . ...... ...... . ........ . .......... . . . . ........... ................... .... . . . ..... ....... . . . . ..... .. . . . . ... . .............. . . . . .. .............. .. ..... .. . ..... . . . ................................................................. .. .. . . ........ ......... ...... .. . .. . . ... ...... . . ..... . ...... .. . . . ... .... .. . . . . . ....... . ... .. .. . ... .... . . . .............. .. ... . . ................... ....... . . . ....... . . ................ .... ..... .. ..
lowQualScore : 9 0 0 1 1 888888 666666 3 77777777 7 7777777777 5 2 5 5 22222222222 6666666666666666666 1111 7 9 9 11111 6666666 7 9 1 5 00000 22 1 1 2 2 444 1 33333333333333 3 3 1 5 22 11111111111111 66 33333 33 0 00000 4 0 0 11111111111111111111111111111111111111111111111111111111111111111 66 88 6 0 55555555 222222222 555555 00 8 22 8 5 000 555555 6 6 11111 6 333333 99 0 0 3 000 1111 88 3 3 3 1 3 1111111 5 222 77 00 0 555 1111 2 8 9 00000000000000 33 777 5 7 4444444444444444444 9999999 3 3 0 2222222 0 6 2222222222222222 3333 55555 66 66
consensus : CCGGTCCCACTGGCCGATGGACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC---GG-----ACGAGCAAAA-TTTCGGG-GTTGGCTCCATCCGTTTTCAT-CCGCTCCA----------GAAATGGA---CAANAATT---T-GC---GAAAACAGAAC-GGAA-AAGAACGGA-----CGAGGGTAGTA------TGTAGCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGAT--G-AC-AG-CTCCGAC---AT-A--------------CTCCAG-AC-ATCCTAAA-TATA--CGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATAT-----ACG-AGA-TGCAT----A----------------C---------------T----------T--------TC------TATTTCCG-TG-CT-ACTAACGATGTATAGACGTT-CCA--------TGTA--------CCT------T--ATCTTTCCTCCCT-CTTTCCGTTTTTCAGC---TGC------AGCGGAT-GTGAG-TTGCG--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGAC-GTTTAACGGATGATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC-TAACGGACATAGAACGTTTG---TTGCTCGT-ATA-T-GT-CGCGGATT-G-ACATCGTA-------CA-CGGCGGAAAGTTCATCCGTT-C-NAAAA-GTTTT---G---TGCNGCNCAAAAC-TTTTN-G-NAC-------GGATGAA-AT---CGCAGT-GGAC-GGATGC------------TCGATGGATAGANCGTATGAAATACGTATGC-AATGAGTACACA--AC-G-ATGCATAGC-GTTTTCCAACGGATGGCAAG--------TN-----TTN---TTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( gi|1 ) : CCAGCCCCATTGGCCGATGGACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC---AA-----ACGAGCAAAA-TTTCGAG-GTTGGCTCCATCCGTTTTCAT-CCGCTCCA----------AAAATTGG---CGACACTT---T-GC---AAAAACAGAAC-GGAA-AAGAAAGGA-----CGAGGGTAGTG------TGTAGCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAAT--G-AC-AG-CTCCTAC---AT-A--------------CTCCAG-AC-ATCCTAAA-TACA--CGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATAT-----ATG-AGA-TGCAT----A----------------C---------------T----------T--------TC------TATTTCCA-TG-AT-ACTAACGATGTATAGACGTT-CCA--------TGTG--------CCT------T--ATCTTTTCTCCCC-CTTCCCGTTTGTCAGC---TGC------AGCGGAT-GTGAG-TTGCG--AGAATGTCCAGAGAATGCAGAGAGGATACAGCGGAC-ATTTAACGGATGATATATATTAATTAATATCTACATGTATATTAATTAATATC-TAACGGACATAGAACGTTTG---TTGCTCTT-TTG-T-GT-CGCGGATT-G-ATATCGTA-------CA-CGGCGGACAGTTCATCCGTT-C-TAAAA-GTTTT---G---TGCAGCTCAAAAC-TTTTA-G-AAT-------GGATGAA-GT---CGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACA-CAT-G-ATGCAGAGC-GTTTTCCAACGGATGGCAA---------TG-----TTG---TTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|6 : CCGGTCCCACTGGTCGATGGACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC---GG-----ACAAGCAAA--TTTCG-G-GCT---TCCATCCGTTTTTAT-CCGCTCCA----------AATATGGA---C-ATAATT---T-GC---GAAAATAGAAC-GGAA-GAGAACGGA-----CGAGAGTAGAA------TGTAGCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGT--G-AC-AG-CTCCGAC---AT-T--------------CTCCAG-AC-ATCCTAAA-TATA--CGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATAT-----ACG-AGA-TGCAT----ATG--------------C---------------TTGTACATCACT--------TC------TACTTCCG-TG-CT-ACTAACGATATATAGACGTT-CCA--------TGTA--------CCT------T--ATCTTTGCCCCCT-CTTTCCGTTTTTCCGC---TAG------AGCGGAT-GTGAG-TTGCG---------C----GGATGCAGAGAGGATACAGCGGAA-GTTTAACGGATGATA
gi|10 : gtCCGATCCCACGGACCGATGGACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC---AG-----ACGAGCAAAA-TTTCGGG-GCTGGCTCCTTCCGTTTTCAT-CCGCTCCA----------AAAGTGGA---CAAAA-TT---G-GC---AAAAACAGAAC-AGAA-AAGAACGGA-----CAAGGGTAG------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAAT--G-AC-AG-CTCCGAC---AT-A--------------CTCCAG-AC-ATATGAAA-TATA--CGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGATGCATA-TGCATGTACA----------------CATCT-----------T----------T--------TT------TATTTCCG-TG-CT-ACTAACGATGTATAGACGTT-CCA--------TGTA--------CCT------TAAATCTTTCCTCCCT-CTTTCCGTTTTTTAGC---AGC------AGCAGAT-AGGTG-TAGCA--AGGATGCCCA-------C--AGAGGATACAGCAGAC-GATTAACGGATGATAacggacaaagaacgtttgaaattgctcgtataatgtcgcggattgaccgaaaagttcatccgttctacaagtgttgtgcagctcaaaactttttgcacgaatgaaatcacagtggacggatgctcgatggacagagcgtacgaaatacgtacaaaacacaacggatgcgtagcgttttccaacgaatgacaagttagatttttttgttttacgttttacatcccctttgcatccgcatgtgcagtgaaaccggg
gi|9 : CCGGTCCCACTCGCCGATGGACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC---AG-----ACGATCAAAA-TTTCG-G-GTTGGCTCCATCCGTTTTCAT-CCGCTCTA----------GAAA-TGG---TG-----------GG---AAA-----AAT-GCAA-ATAGAACGA-----CGAGGATAGTA------TGTAGT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGT--GAAC-AGACTCCGACCAAATAA--------------AAACAG-AC-CGCCTAAA-TATA---GA-------GGATAATGT--ACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACacggacacagaacgcatgctgctcgtatatgtcgccaattgacatcgtaaac
gi|18 : cCCAGTCCCACTGACTAATGGACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA---AG-----ACAAGCAAAA-TGTTGGT-GTTGGCTTCACCCGTTTTCAT-CCGCTCTA----------GAAA-TGGAAAAAAAAC-T---T-GC---AGAAACAGAAC-GGAA-AA-AACTGG-----CGAGGGTAGTA------TGTAGCGGGTA-TGTTAAACGGCTGTTCATCGGAggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
gi|32 : cCCGATCCAACTGGTCGATTGACA-CAAA-ACGTA------TGg
gi|4 : ttaatgtCGGTCCCACTAGCTGATGGACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC---AG-----AAGAGCAAAA-TTTCGGG-GTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGAAACAAAATTGT---AGACAATT---T-GC---GAAAACAAAAAAGGAA-AAAGAAGGA-----CGAGGATAGTACATGTATGTAGCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAAT--G-AC-AG-CTTCGAC---AT-A--------------CTCCAA-AC-ATCCTAAATTATA--CGA-------G------AT--GCAT-CCAG-----ATACAAACACTTTATTCATTTTGAATACTTTATAT-----ACG-AGA-TGCAT----A----------------CGCTTATATCCTTTAAT----------T--------TC------TATTTCCG-TG-CT-ACTAAAGATGTATAGATGCT-CCA--------TGTA--------GCT------G--ATCTTTCCTCCCT-CTTTCCGTTTGTCAGC---TGC------AGCGGAT-GGGAG-TTGGG--AGGATTCTCAAAGGATGCAGAGAGGATAAAGGGAAC-ATTTAACGGAGGATACA
gi|22 : CGGTCCCACTGGCTGATGGACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC---CA-----ACAAGCAAAA-TTTCAGT-GTTGACTCCATCTGTTTTCAT-ggaaatagaacgtttgttgctcgtatatgtcgcggattgacggcggaaagttcatcagttctgaaagctttgtgctgcccacagctttttgcgccgatgaaatcgcagcggacgaaagctcgaaatatagaacgtatgaaatacgtacgcaatgagtaaacaacgaaaacatagcgttcaccaacgaaagacaagattgtttttacatcctcttgcatccgtaagtgcattgggg
gi|2 : CCCCACTGTCCGATGGACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC---GG-----ACGTGCAAAA-TGTTGGG-GTTGGCTCCATCCGTTTTCAT-CCTCTCCA----------AAAATGGA---CAAAA-TT---T-GC---GAAAACAGAAC-GGAA-AGAAAAGGAACGGACGAGGGTAGTA------TGTAGCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGAT--T-AC-AG-CTTCGAC---AG-A--------------CTCCAG-AC-ATCCTAAA-TAC----GA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTAT-----ACG-AGA-TGCAT----ATATGCTTACATGTATCC---------------T----------T--------TC------TATTTCAG-TG-CT-ACTAACGATGTATAGACGTT-CCA--------TGGA--------CAT------T--ATCTTTCCTCCCT-CTTTCCGTTTTTCAGC---TGC------AGCGGAT-GTGAG-TTGCG--AGTATGCCCAGAGGGTGCAGAAAGGATACAACGGAC-GTTTAACGGATGATA
gi|16 : ctaCCCACTGGCCAATGGACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC---GG-----ACGAGCAAAA-TTTTAAG-GTTGGCTCCATCCGTTTTCAT-TCGCTCCA----------GAAATTGA---CAAAA-TT---G-GG---GAAGACAGAAA-GGAA-AAGAACGGA-----CGAAGGTAGTA------TGTAGCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGAT--G-GC-AG-CTCCGAC---AT-A--------------ATCCAG-AC-ATCCTAAA-TATA--CGA-------A------AT--GCATCCCAG-----Aacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgttttacatccgctttgcttccagtagtgcagtgggaccggg
gi|19 : cgttCCCACGGGCTGATGGAC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC---AG-----ACGAGCAAAA-TTTCTGG-ATTGACTCCATCCGTTTTCAT-CCGCTTCA----------GAAAGGGG---CAA-AATT---G-GC---TAAATTAAAAC-AG-A-AAGAACAGA-----AGAATTTAGTA------TTTAGCCGGGA-AGTTAAACGGTTGTTCATCGGA
gi|7 : tTGGCCAATGGACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC---GG-----ACGAGCAAAA-TTTTAGG-GTTGGCTCCATCCGTTTTCAT-CCGCTCCG----------GGAAT-GG-------------------------ACAAAATTGGGG-AAGAACGAA-----CGAGGGTAGTG------TGTAGTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGAC--G-AC-AG-CTCCGAC---AC-A--------------CTCCAG-AC-ATCCTAAA-TATA--TGA-------A------AT--ACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATAT-----ACG-AGA-TACAT----ATACG------------C---------------T----------TACATCTTATC------TATTTCCG-TG-CC-ACTAACGATGCATAGACGTT-ACA--------TGTA--------CCT------C--ATCTTTCCTCCCT-CT--CCGTTTTTCAGC---TGC------AGCGGAT-GTGAG-TTGCG--AGGATGCCC-----------AGAGGACACAGCGGAC-GTTTAACGGATGATA
gi|17 : GGCCGATGGACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC---GG-----ACGAGTGAAA-TTTCGGG-GTTAGCTCCCTCCGTTTTCGT-CCGCTCCA----------GAAATGGA---CAA-AATT---G-GC---GAAAACAGAGC-GGAA-AAGAACGAA-----CGAGAGTAGTA------TGTAGCGG-------------------------AAGCCAAGCGGATGGAAGTGCAC--G-AC-TG-CTCCGAC---AT-G--------------CTCacggacttgaaaagtttgttgcttgtatatgtcgcggattgacatcgtacacggtgggaagtccatccgttctaaaagttttgtgcggcttgaaactttttacacaaatgaaatcacagtggacggggtgctcgatggatagagcgtatgaaatacttttgcaatgagtacacaatggatgcatagcattttccaatggatggcaagttttttttaacattttacatcctctttgcatccgtaagtgcagtaggaccg
gi|13 : GGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG---TCGCTCCATT-GTATTCATTCCGTTCTA----------GAGATAGA---CAAAACTG-----GCGGGAACAACAGAAA-GGAACAAGAACAGA-----CGAGGG--ATG------TTT-GCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCG-ACTAGTTTTCTAC---AT-AATTCTGAAACATATTTCAAG-ACAATCCTAAA-TCTA--CTA-------G------Atcga
gi|8 : ggtccggttcccaccctgccactgAATG--------GACAC-AGC---GG-----ACGAGCAAAA-TGTCGTG-GGTGGCTCCATCCG-----------CTCCA----------GAAATGTA---CAACA-TT---T-GC---GAAAACAGAGC-AGAA-AAGTACGGA-----CGAGTGTAGTA------TGTAGCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGAT--G-AC-AG-CTCCGAC---AT-AC-------------CTCTCG-AC-ATACTACA-GACATCC-----------------T--ACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATAT-----ACG-AGA-TACAT----A----------------C---------------C----------C--------TC------TTATCCTG-TG-CT-ACTAACGATGTATAGACGTT-CCATGTAGAACTGTA--------CCT------T--ATCTTTCCTCCCT-CTTTCCGTTTTTCAGC---TGC------AGCGGAT--TGAG-TTGCA--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGAC-GTTTAGCGGATGATA
gi|3 : ggcctggtcccactggctG--------GGCAC-AGC---AC-----ACAAGCAAAA-TTTCGAG-GTTGAATCCATCTTGTTTCAT-CCGCTCCA----------GAAATGGA---CAACAATTGCATAGC---GAAAACAGAAC-GAAA-GAGAACGGA-----CGAGGGAAATA------TGTAGCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGAT--G-AC-AG-TTCCGAC----T-AG-------------CTCTAGAAC-ATCCTGAA-TATA--CGAAATACATG------AT--ACATCCCAG-----ACACAAA--CTTTGTACGTATTGAATTTTTTATAA-----ACG-AGA-TGCAT----AACGCTTGCATC-----C---------------T----------T--------TCTAATG-TATTTCCG-TACCT-ACTAAGAGTGTAATGAGGTT-CCA--------TATGCATGTATACCT------T--ATCCCCCCCCCCCTCTTTTCGTTT-TCAGC---TGT------AGCGGAT-GTGAGTTTGCG--AGGATGCCCAAAGGATACAGATAGGATACAGAGGACGGTTTAACGGATGATacggacatggaacgtttgatgcggattggcatcgtacacggcggaacgttcatccgttctaaacgttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcaaaggatagagcgcatgaaatacgaatgcaatgagtatacagcagatgcatagcgtttttaaacggatggcaagatttgatttttttttttacgttttacaacctctttgcatccgtaagtgcagtg
gi|5 : --------GGCAC-AGC---AC-----ACAAGCAAAA-TTTCGAG-GTTGAATCCATCTGTTTTCAT-CCGCTCCA----------GAAATGGA---CAACAATTGCATAGC---GAAAACAGAAC-GAAA-GAGAACGGA-----CGAGGGAAATA------TGTAGCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGAT--G-AC-AG-TTCCGAC----T-AG-------------CTCTAG-AC-ATCCTAGA-TATA--CGAAATACATG------AT--ACATCCCAG-----ACACAAA--CTTTGTACGTATTGAATTTTTTATAA-----ACG-AGA-TGCAT----AACGCTTGCATC-----C---------------T----------T--------TCTACATGTATTTCCG-TC-CT-ACTAACGATGTATAGAGGTT-CCA--------TATGCATGTATACCT------T--ATCCCCCCCCCCT-CTTTTCGTTT-TCAGC---TGT------AGCGGAT-GTGAG-TTGCG--AGGATGCCCAAAGGATACAGATAGGATACAGAGGAC-GTTTAACGGATGATgacgaacatctagcttttgttgctcgtatattgttgcgtattgacatcgtacacggcggaaagttcatccgttctaaacgttttgtgcagctcaaatctttttgcggcggatgaaatcacagtgggacatatgctcgatggatagatcatgtgaaatacctatgcaaatgagtatacaacgaatgcatagcggttttccaatggatggcaggatttttttgttttacgtattgtatcttctttgcatccgtaattaaagtgcagtgggatcggag
gi|6 : -----ACGAGCAA---TTTCAAACGTT--CTTTGTCCGTTATCAT-CCGTTgacgaacatctagcttttgttgctcgtatatgttgcgtattgacatcgtacacggcggaaagttcatccgttctaaacgttttgtgcagctcaaatctttttgcgcggatgaaatcacagtggacatatgctcgatggatagatcatgtgaaatacctatgcaaatgagtatacaacgaatgcatagcgttttccaatggatggcaggatttttttgttttacgtattgtatcttctttgcatccgtaatttaagtgcagtgggatcgg
gi|15 : gtccggtcccactggtcgatggacacaaaacgtatgcaagaaggacacagcggacaagcaaatttcgggcttccatccgtttttatccgctccaaatatggacataatttgcgaaaatagaacggaagagaacggacgagagtagaatgtagcgtggatgttaaacggctgttcatctgacgccaagcggatggaagtgagtgacagctccgacattctccagacatcctaaatatacgagatacatcccagatacaaacgctttgtccgttttgaatactttatatacgagatgcatatgcttgtacatcacttctacttccgtgctactaacgatatatagacgttccatgtaccttatctttgccccctctttccgtttttccgctagagcggatgtgagttgcgcggatgcagagaggatacagcggaagtttAGCGGATGGAAGTGGAT--G-AC-AG-CACCGAC---AT-A--------------CCCCAG-GC-ATCCCAAA-CATA--CGA-------G------AT--ACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATAT-----AGA-AGCTTACAC----C----------------C---------------T----------T--------TT------TAGTTCTG-TG-CT-ACAAACGATATATAGACATTCCCA--------TGTA--------CCT------T--ATCGTTCTAACCT-CTTTCCGCTTTTCAGataatgtcgcggattgaccgaaaagttcatccgttctacaagtgttgtgcagctcaaaactttttgcacgaatgaaatcacagtggacggatgctcgatggacagagcgtacgaaatacgtacaaaacacaacggatgcgtagcgttttccaacgaatgacaagttagatttttttgttttacgttttacatcccctttgcatccgcatgtgcagtgaaaccggg
gi|21 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCCTAAA-TATG--CGA-------G------AT--TTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATAT-----ACG-AGA-TACAT----C----------------C---------------T----------T--------TC------TTTTTCCG-TG-CT-ACTAACG
gi|9 : ----------T--------CC------TATTTCCGGTG-GCCACTAAC-ATGTATAGACGTC-CCA--------TGTA--------CCTTACATGT--ATCTTTCCCCCCT-CTTTCCAATT-TCAGCCTGTGCACAGCTAGCGGATAGTGAG-GTGCGTTA-AATGCCC-----------AGAGGATACAGCGGAC-GTTGAACGGATGATA
gi|11 : cccggtcccactcgccgatggacacaaaacgtttgcgagaaggacacaagcagacgatcaaaatttcgggttggctccatccgttttcatccgctctagaaatggtgggaaaaatgcaaatagaacgacgaggatagtatgtagtgggatgtttaaaggccgttcatcgggaggctagtggatggaagtgggtgaacagactccgaccaaataaaaacagaccgcctaaatatagaggataatgtacatcccagattaaagtccgtcttgaacacggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctg--------CTT------T--ATCTTTCCTCTGT-CTTTCCGTTTTTCAGA---TGC------AG---------GG-TTGCG--AGGATGCCCATAGGATGCAGTGAGGATACAGCGAAT-GTTTAACGAATCATAaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
gi|12 : C------AGCGAAT-GTGAG-TTGCG--A--------AGAG---GCAGAGAGAATACAGTGGAC-ATTTAACGGATGATAacggacgtggaacgttttttgctcgtatgtgtcgtgggttgacatcgtacacgatgggaagttcatccgttcaaaaagttatgtgtacttcaaaactgtttgcgcggatgaaatcatagtggatagatgctcgatgggtagaaaatatgaaaaacgtatgcaatgagtacatatcgtgtccatagcgttttctaacgaatgacaagattttttaaagttataattctttgcatccgtaattgcagtgggatcggg
gi|11 : ATCATAACGGACGTGGAACGTTTT---TTGCTCGT-ATG-T-GT-CGTGGGTT-G-ACATCGTA-------CA-CGATGGGAAGTTCATCCGTT-C-AAAAA-GTTAT---G---TGTACTTCAAAAC-TGTTT-G-CGC-------GGATGAA-AT---CATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGT-G--TCCATAGC-GTTTTCTAACGAATGACAA---------GA-----TTT---TTTA-----AA--GTTA--TA-AT--TCTTTGCATCCgcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|2 : ctttatctttcctctgtctttccgtttttcagatgcagggttgcgaggatgcccataggatgcagtgaggatacagcgaatgtttaacga-TAACGGACATAGAACGTTTG---TTGCTCGT-ATA-T-GT-CGCGGATT-G-ACATCGTA-------CC-CGGCGGAAAGTTCATCCGTT-C-TACTA-GTTTC---G---TGCAGCTCAAACA-TTTT--G-CGC-------GGATGCA-GT---CGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACA-TTG-G-ATGCACAGC-GTTTTCCAACGGATGGCAAGC-------TT-----TTG----TTA-----AC--GTTT--TACATCCGCTTTGCTTCCAgtaattgcagtgggatcggg
gi|6 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatga-TAACGGACAAAGAACGTTTGAAATTGCTCGT-ATAAT-GT-CGCGGATT-G-AC-------------------CGAAAAGTTCATCCGTT-C-TACAA-GTGTT---G---TGCAGCTCAAAAC-TTTTT-G-CAC-------GAATGAA-AT---CACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACG--TAC-AA--AACACA-A-CG--G-ATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTT-----TTG---TTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtagtgcagtgggaccggg
gi|7 : gtccggtcccactggtcgatggacacaaaacgtatgcaagaaggacacagcggacaagcaaatttcgggcttccatccgtttttatccgctccaaatatggacataatttgcgaaaatagaacggaagagaacggacgagagtagaatgtagcgtggatgttaaacggctgttcatctgacgccaagcggatggaagtgagtgacagctccgacattctccagacatcctaaatatacgagatacatcccagatacaaacgctttgtccgttttgaatactttatatacgagatgcatatgcttgtacatcacttctacttccgtgctactaacgatatatagacgttccatgtaccttatctttgccccctctttccgtttttccgctagagcggatgtgagttgcgcggatgcagagaggatacagcggaagtttaacggatga-TAACGGACTTGAAAAGTTTG---TTGCTTGT-ATA-T-GT-CGCGGATT-G-ACATCGTA-------CA-CGGTGGGAAGTCCATCCGTT-C-TAAAA-GTTTT---G---TGCGGCTTGAAAC-TTTTT-A-CAC-------AAATGAA-AT---CACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACA--ATGG-ATGCATAGC-ATTTTCCAATGGATGGCAA----------G-----TTT---TTTTTA---AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|5 : tggccaatggacgcaaaacgtacgcgtatgcaaaaaggacacagcggacgagcaaaattttagggttggctccatccgttttcatccgctccgggaatggacaaaattggggaagaacgaacgagggtagtgtgtagtggggatgttaaacagctgttcatcggaagcctagcggatggaagtggacgacagctccgacacactccagacatcctaaatatatgaaatacatccctaaacactttgtccattttgaatactttatatacgagatacatatacgcttacatcttatctatttccgtgccactaacgatgcatagacgttacatgtacctcatctttcctccctctccgtttttcagctgcagcggatgtgagttgcgaggatgcccagaggacacagcggacgtttaacggatga-TGACGAACATCTAGCTTTTG---TTGCTCGT-ATA-T-GT-TGCGTATT-G-ACATCGTA-------CA-CGGCGGAAAGTTCATCCGTT-C-TAAAC-GTTTT---G---TGCAGCTCAAATC-TTTTT-G-CGC-------GGATGAA-AT---CACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACA--AC-GAATGCATAGC-GTTTTCCAATGGATGGCAGGATTT----TT-----TTG---TTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcagtaggaccg
gi|10 : ggcacagcacacaagcaaaatttcgaggttgaatccatctgttttcatccgctccagaaatggacaacaattgcatagcgaaaacagaacgaaagagaacggacgagggaaatatgtagcggggatgttaaacggatgttcgtcggaagcctagcggatgaaagtggatgacagttccgactagctctagacatcctagatatacgaaatacatgatacatcccagacacaaactttgtacgtattgaattttttataaacgagatgcataacgcttgcatcctttctacatgtatttccgtcctactaacgatgtatagaggttccatatgcatgtataccttatcccccccccctcttttcgttttcagctgtagcggatgtgagttgcgaggatgcccaaaggatacagataggatacagaggacgtttaacggatga-TAACGGACACAGAACGCATG---CTGCTCGT-ATA-T-GT-CGCCAATT-G-ACATCGTA-------AA-Cgtaatttaagtgcagtgggatcgg
gi|8 : ccgatcccacggaccgatggacacacaacgtatgccaaaaggaaacagcagacgagcaaaatttcggggctggctccttccgttttcatccgctccaaaagtggacaaaattggcaaaaacagaacagaaaagaacggacaagggtagagttaaacgactgttcattggaagctgtgaatgacagctccgacatactccagacatatgaaatatacgaatttacatccaagatacaaacgctttgtccgttttaaatactttatattctcgatgcatatgcatgtacacatcttttttatttccgtgctactaacgatgtatagacgttccatgtaccttaaatctttcctccctctttccgttttttagcagcagcagataggtgtagcaaggatgcccacagaggatacagcagacgattaacggatga-TAACGGACATGGAACGTTTG---ATGC-----------------GGATT-G-GCATCGTA-------CA-CGGCGGAACGTTCATCCGTT-C-TAAAC-GTTNN---N---NNNNNNNNNNNNN-NNNNN-N-NNN-------NNNNNNN-NN---NNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCA--G-ATGCATAGC-GTTTTTAAACGGATGGCAAGATT-----TGATTTTTTT---TTTT-----AC--GTTT--TACAACCTCTTTGCATCC
gi|3 : ggcctggtcccactggctaatggacacagcggacgagcaaaatgtcgtgggtggctccatccgctccagaaatgtacaacatttgcgaaaacagagcagaaaagtacggacgagtgtagtatgtagctgagatgtcaaacgtctgctcatcggaagcctagcggatgaaggcggatgacagctccgacatacctctcgacatactacagacatcctacatcctagataaaacacgttgtccgttttaattactttatatacgagatacataccctcttatcctgtgctactaacgatgtatagacgttccatgtagaactgtaccttatctttcctccctctttccgtttttcagctgcagcggattgagttgcaaggatgcccagaggatgcagagaggatacagcggacgtttagcggatga-TGACGAACATCTAGCTTTTG---TTGCTCGT-ATA-TTGT-TGCGTATT-G-ACATCGTA-------CA-CGGCGGAAAGTTCATCCGTT-C-TAAAC-GTTTT---G---TGCAGCTCAAATC-TTTTT-GCGGC-------GGATGAA-AT---CACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACA--AC-GAATGCATAGCGGTTTTCCAATGGATGGCAGGATTT----TT-----TTG---TTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcagtg
gi|9 : gggcacagcacacaagcaaaatttcgaggttgaatccatcttgtttcatccgctccagaaatggacaacaattgcatagcgaaaacagaacgaaagagaacggacgagggaaatatgtagcggggagtgttaaacggattttcgtcggaagcctagcggatgaaagtggatgacagttccgactagctctagaacatcctgaatatacgaaatacatgatacatcccagacacaaactttgtacgtattgaattttttataaacgagatgcataacgcttgcatcctttctaatgtatttccgtacctactaagagtgtaatgaggttccatatgcatgtataccttatccccccccccctcttttcgttttcagctgtagcggatgtgagtttgcgaggatgcccaaaggatacagataggatacagaggacggtttaacggatgaAACG-ACAGAGAACGTTT-------CTCGTATTG-T--T-AGCGGATTTG-ACATCGTA-------CAACGGCGGAAAATTCATCCGTT-C-TAAAA-GTGTT---G---TGC-GTTC-AAAC-TTT---G-TGTTTGCGCGGGATGAA-AT---C----T-GGAC--GATGT------------TCGgtaattaaagtgcagtgggatcggag
gi|4 : cccggtcccactcgccgatggacacaaaacgtttgcgagaaggacacaagcagacgatcaaaatttcgggttggctccatccgttttcatccgctctagaaatggtgggaaaaatgcaaatagaacgacgaggatagtatgtagtgggatgtttaaaggccgttcatcgggaggctagtggatggaagtgggtgaacagactccgaccaaataaaaacagaccgcctaaatatagaggataatgtacatcccagattaaagtccgtcttgaacacggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataGGAAATAGAACGTTTG---TTGCTCGT-ATA-T-GT-CGCGGATT-G-A-----------------CGGCGGAAAGTTCATCAGTT-C-TGAAA-GCTTT---G---TGCTGCCCACAGC-TTTTT-G-CGC-------CGATGAA-AT---CGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACA--AC-GAAAACATAGC-GTTCACCAACGAAAGACAA---------GA-----TTG---T-------------TTT--TACATCCTC-TTGCATCC
gi|14 : cggtcccactagctgatggacactaaacgtatgttaaaagcacgcagcagaagagcaaaatttcggggttggctccattcgttttcatcggctccagaaatgaaacaaaattgtagacaatttgcgaaaacaaaaaaggaaaaagaaggacgaggatagtacatgtatgtagcctggatattaaactgttcattagaagcctaacggatggaggtgaatgacagcttcgacatactccaaacatcctaaattatacgagatgcatccagatacaaacactttattcattttgaatactttatatacgagatgcatacgcttatatcctttaatttctatttccgtgctactaaagatgtatagatgctccatgtagctgatctttcctccctctttccgtttgtcagctgcagcggatgggagttgggaggattctcaaaggatgcagagaggataaagggaacatttaacggaggataca-TTG-T-GTACCC--ATT-GCATA-CGTATTCCTTCCA-CTGCG-AC--TTCATCCG---CGTAAAATGTTTT---GATCTGCA---CAAAAC-GTTTT-G-AAG-------GGATGAA-CTTTCCGCCGT-GTAC--GATG-------------TCGATgtaagtgcattgggg
gi|14 : cttgatcatcaaaacgcttcgactcgttcgtatgataagacaaacgtctggatgatcgagactatcgtatgtgtcgcggTG-T-GT-CGCGGATC-G-ACATCGTA-------CA-CGGCGGAAAGTTCATCCCTT-C-AAAAC-GTTTT---G---TGCAGATCAAAACATTTTACG---C-------GGATGAA-GT---CGCAGT-GGA--AG-----------------------------------GAATACGTATGC-AATGGGTACACA--ATGG-ATGCATAGC-GTTTTCAGACGGATGGCTA---------GA-----TTT---TTTTAAAAAAC--TTTT--AACATCCTCTTTACtggatgcatagcgttttcagacggatggctagatttttttaaaaaacttttaacatcctctttacggcgactggaattt
gi|5 : cttgatcatcaaaacgcttcgactcgttcgtatgataagacaaacgtctggatgatcgagactatcgta-ATAT-GTC-------CA-CTGTG---ATTTCATCCGCG-C-AAAAA-GATTT---G---AGCTGCACAAAAC-GTTTA-G-AAC-------GGATGAA-CTTTCCGCCGT-GTAC--GATG-------------TCAAT--ACGCAACATATggcgactggaattt
gi|2 : ggcacagcacacaagcaaaatttcgaggttgaatccatctgttttcatccgctccagaaatggacaacaattgcatagcgaaaacagaacgaaagagaacggacgagggaaatatgtagcggggatgttaaacggatgttcgtcggaagcctagcggatgaaagtggatgacagttccgactagctctagacatcctagatatacgaaatacatgatacatcccagacacaaactttgtacgtattgaattttttataaacgagatgcataacgcttgcatcctttctacatgtatttccgtcctactaacgatgtatagaggttccatatgcatgtataccttatcccccccccctcttttcgttttcagctgtagcggatgtgagttgcgaggatgcccaaaggatacagataggatacagaggacgtttaacggatgatgacgaacatctagcttttgttgctcgtTCGTC-------CA-CTGCG-AC--TGCATCCGCG-C--AAAA-TGTTT---G---AGCTGCACGAAAC-TAGTA-G-AAC-------GGATGAA-gctcgatggatagatcatgtgaaatacctatgcaaatgagtatacaacgaatgcatagcgttttccaatggatggcaggatttttttgttttacgtattgtatcttctttgcatccgtaatttaagtgcagtgggatcgg
gi|6 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagCGTC-------CA-CTGTG---ATTTCATTCGTG-C-AAAAA-GTTTT---G---AGCTGCACAACAC-TTGTA-G-AAC-------GGATGAA-atgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgttttacatccgctttgcttccagtagtgcagtgggaccggg
gi|7 : gtccggtcccactggtcgatggacacaaaacgtatgcaagaaggacacagcggacaagcaaatttcgggcttccatccgtttttatccgctccaaatatggacataatttgcgaaaatagaacggaagagaacggacgagagtagaatgtagcgtggatgttaaacggctgttcatctgacgccaagcggatggaagtgagtgacagctccgacattctccagacatcctaaatatacgagatacatcccagatacaaacgctttgtccgttttgaatactttatatacgagatgcatatgcttgtacatcacttctacttccgtgctactaacgatatatagacgttccatgtaccttatctttgccccctctttccgtttttccgctagagcggatgtgagttgcgcggatgcagagaggatacagcggaagtttaacggatgataacggacaaagaacgtttgaaattgctcgtataatgtcgcggattgaccgaaaagCGTC-------CA-CTGTG---ATTTCATTTGTG-T-AAAAA-GTTTC---A---AGCCGCACAAAAC-TTTTA-G-AAC-------GGATGGA-gatgctcgatggacagagcgtacgaaatacgtacaaaacacaacggatgcgtagcgttttccaacgaatgacaagttagatttttttgttttacgttttacatcccctttgcatccgcatgtgcagtgaaaccggg
gi|3 : tggccaatggacgcaaaacgtacgcgtatgcaaaaaggacacagcggacgagcaaaattttagggttggctccatccgttttcatccgctccgggaatggacaaaattggggaagaacgaacgagggtagtgtgtagtggggatgttaaacagctgttcatcggaagcctagcggatggaagtggacgacagctccgacacactccagacatcctaaatatatgaaatacatccctaaacactttgtccattttgaatactttatatacgagatacatatacgcttacatcttatctatttccgtgccactaacgatgcatagacgttacatgtacctcatctttcctccctctccgtttttcagctgcagcggatgtgagttgcgaggatgcccagaggacacagcggacgtttaacggatgataacggacttgaaaagtttgttgcttgtatatgtcgcggattgacatcgtacacggtgggaagTTCATCCGCCGC-AAAAA-GATTT---G---AGCTGCACAAAAC-GTTTA-G-AAC-------GGATGAA-CTTTCCGCCGT-GTAC--GATG-------------TCAATgggtgctcgatggatagagcgtatgaaatacttttgcaatgagtacacaatggatgcatagcattttccaatggatggcaagttttttttaacattttacatcctctttgcatccgtaagtgcagtaggaccg
gi|11 : gggcacagcacacaagcaaaatttcgaggttgaatccatcttgtttcatccgctccagaaatggacaacaattgcatagcgaaaacagaacgaaagagaacggacgagggaaatatgtagcggggagtgttaaacggattttcgtcggaagcctagcggatgaaagtggatgacagttccgactagctctagaacatcctgaatatacgaaatacatgatacatcccagacacaaactttgtacgtattgaattttttataaacgagatgcataacgcttgcatcctttctaatgtatttccgtacctactaagagtgtaatgaggttccatatgcatgtataccttatccccccccccctcttttcgttttcagctgtagcggatgtgagtttgcgaggatgcccaaaggatacagataggatacagaggacggtttaacggatgatgacgaacatctagcttttgttgctcgtatattgttgcgtTTCATCCGCG-C-AAACA-GTTTTGAAG---TACA---CATAAC-TTTTT-G-AAC-------GGATGAA-atcacagtgggacatatgctcgatggatagatcatgtgaaatacctatgcaaatgagtatacaacgaatgcatagcggttttccaatggatggcaggatttttttgttttacgtattgtatcttctttgcatccgtaattaaagtgcagtgggatcggag
gi|20 : ctttatctttcctctgtctttccgtttttcagatgcagggttgcgaggatgcccataggatgcagtgaggatacagcgaatgtttaacgaatcataacggacgtggaacgttttttgctcgtatgtgtcgtgggttgacatcgtacacgatgggaagTTCATCCACG-C-AAAAA-GTTTT---G---AACTGTACAAAAC-CTTTT-G-AAT-------GGATGatcatagtggatagatgctcgatgggtagaaaatatgaaaaacgtatgcaatgagtacatatcgtgtccatagcgttttctaacgaatgacaagattttttaaagttataattctttgcatccgtaattgcagtgggatcggg
gi|20 : CATCCATT-C-AAAAG-GTTTT---G---TACAGTTCAAAAC-TTTTT-G-CGT-------GGATGAA-AT---CACAGT----C-AG--------------------TGGACGAA--------AATGCGTATGC-AATGAGTACACA-GCG-G-ATGCATAGC-GTTTTACAACGGAATGCAA---------T------TTG---TTTT-----AC--GTTT--TACATCCTCTTTGCATCatcacagtcagtggacgaaaatgcgtatgcaatgagtacacagcggatgcatagcgttttacaacggaatgcaatttgttttacgttttacatcctctttgcatcagtaagtgctgtgagaccgggac
gi|9 : AAA-GTTT----G---AAC-GCACAACAC-TTTTA-G-AAC-------GGATGAA-agtaagtgctgtgagaccgggac
gi|8 : cccggtcccactcgccgatggacacaaaacgtttgcgagaaggacacaagcagacgatcaaaatttcgggttggctccatccgttttcatccgctctagaaatggtgggaaaaatgcaaatagaacgacgaggatagtatgtagtgggatgtttaaaggccgttcatcgggaggctagtggatggaagtgggtgaacagactccgaccaaataaaaacagaccgcctaaatatagaggataatgtacatcccagattaaagtccgtcttgaacacggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaaAAC-GTTTA-G-AAC-------GGATGAACGTTC-CGCCGT-GTAC--GATGC------------gtgtttgcgcgggatgaaatctggacgatgttcg
gi|12 : ggcctggtcccactggctaatggacacagcggacgagcaaaatgtcgtgggtggctccatccgctccagaaatgtacaacatttgcgaaaacagagcagaaaagtacggacgagtgtagtatgtagctgagatgtcaaacgtctgctcatcggaagcctagcggatgaaggcggatgacagctccgacatacctctcgacatactacagacatcctacatcctagataaaacacgttgtccgttttaattactttatatacgagatacataccctcttatcctgtgctactaacgatgtatagacgttccatgtagaactgtaccttatctttcctccctctttccgtttttcagctgcagcggattgagttgcaaggatgcccagaggatgcagagaggatacagcggacgtttagcggatgataacggacatggaacgtttgatgcggattgGT-GCTTTCCAACGGATGGCAA---------GA-----TTT---TTTTAA---ACAAATTTAATACATCCTCTTTGCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtcaaaggatagagcgcatgaaatacgaatgcaatgagtatacagcagatgcatagcgtttttaaacggatggcaagatttgatttttttttttacgttttacaacctctttgcatccgtaagtgcagtg
gi|23 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngGATGGCAA---------GA-----TTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCCacgtaagtgcagtgggacca
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 2222222222222222222 222222222222222 22222222222222 1111111111111111111111111111111111111111111111111111 111111 33333333333333333 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111 222 4444444444 11111
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 2 2 5555555555555555555 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 5 2 3 3 3 33 2 44444444444444 33 77777 4 3 1111111111111111111111111111111111111111111111111111 777777 3 3 3 3 00000000000000000 999999 44 3 666 999999 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 666 3 3 3 3 3 1 0 4 1 1 7777 1 666 3 3 3 55 777777777777 3 7 3 222 55 3 9999999999 1 11111 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . . . ................... .. . .. . . ..... ...... . . . ............... . .. ... . . . . . . .. . .............. .. ..... . . .................................................... ...... . . . . ................. ...... .. . ... ...... . ................................................................................................ ... . . . . . . . . . . .... . ... . . . .. ............ . . . ... .. . .......... . ..... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 7 7 0000000000000000000 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 7 9 1 1 1 99 9 44444444444444 99 77777 4 3 7777777777777777777777777777777777777777777777777777 999999 3 3 3 6 88888888888888888 666666 66 3 444 666666 3 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 444 3 3 3 3 3 0 2 2 0 2 1111 0 222 3 1 3 88 111111111111 5 3 6 777 00 3 7777777777 0 99999 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG-A-CAA-A---------ATT---T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-C-TCC-AGA-C-ATCCTA--AAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCATGT--------A--------CCT------T--ATCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGC------AGCGGAT-GTGAGTTGC-G--AGGATGCCC---GGATGCC-AGAGGATACAGCGGACGTTTAACGGAT--GATACAGAGGACGTTTAACGGACGN--------------A---TAACGGACATAGAACGTTTG---TTGCTCGTATA-T-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTG-CGC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACA-ACGG-ATG--CATAGC-GTTTTCCAACGGATGGCAAG-T------TTTTNTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG-A-CAANA---------ATT---T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-C-TCC-AGA-C-ATCCTA--AAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCATGT--------A--------CCT------T--ATCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGC------AGCGGAT-GTGAGTTGC-G--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACGTTTAACGGAT--GATACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATC-TAACGGACATAGAACGTTTG---TTGCTCGTATA-T-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCNAAAAGTTTTGTGCNGCNCAAAACTT----TTNG-NAC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGANCGTATGAAATACGTATGC-AATGAGTACACA-AC-G-ATG--CATAGC-GTTTTCCAACGGATGGCAAG--------TNTTNTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG-G-CGACA---------CTT---T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-C-TCC-AGA-C-ATCCTA--AAT-ACACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCA-TG-A-TACTAACGATGTATAGACGTT-CCATGT--------G--------CCT------T--ATCTTTTCTCCC-CCTTCCCGTTTGTCAGC---TGC------AGCGGAT-GTGAGTTGC-G--AGAATGTCCAGAGAATGCAGAGAGGATACAGCGGACATTTAACGGAT--GATATATATTAATTAATATCTACATGTATATTAATTAATATC-TAACGGACATAGAACGTTTG---TTGCTCTTTTG-T-GTC-GCGGATT-GATATCGTACA-CGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAG-AAT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACAT-G-ATG--CAGAGC-GTTTTCCAACGGATGGCAA---------TGTTGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|10 : CCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG-A-CAA-A---------ATT---G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-C-TCC-AGA-C-ATATGA--AAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATATGCATGTACACATC--T---------------T----------T--------TTTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCATGT--------A--------CCT------TAAATCTTTCCTCCC-TCTTTCCGTTTTTTAGC---AGC------AGCAGAT-AGGTGTAGC-A--AGGATGCCCA-------C--AGAGGATACAGCAGACGATTAACGGAT--GATA
gi|10 : -TAACGGACACAGAACGCATG---CTGCTCGTATA-T-GTC-GCCAATT-GACATCGTAAA-Cacggacacagaacgcatgctgctcgtatatgtcgccaattgacatcgtaaac
gi|11 : ccgatcccacggaccgatggacacacaacgtatgccaaaaggaaacagcagacgagcaaaatttcggggctggctccttccgttttcatccgctccaaaagtggacaaaattggcaaaaacagaacagaaaagaacggacaagggtagagttaaacgactgttcattggaagctgtgaatgacagctccgacatactccagacatatgaaatatacgaatttacatccaagatacaaacgctttgtccgttttaaatactttatattctcgatgcatatgcatgtacacatcttttttatttccgtgctactaacgatgtatagacgttccatgtaccttaaatctttcctccctctttccgttttttagcagcagcagataggtgtagcaaggatgcccacagaggatacagcagacgattaacggatga--------CTT------T--ATCTTTCCTCTG-TCTTTCCGTTTTTCAGA---TGC------AG---------GGTTGC-G--AG-----------GATGCCCATAGGATGCA------GT------GAG--GATACAGCGAATGTTTAACGA------------------ATCATAACGGACGTGGAACGTTTT---TTGCTCGTATG-T-GTC-GTGGGTT-GACATCGTACA-CGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTG-CGC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATA-TC-G--TGTCCATAGC-GTTTTCTAACGAATGACAAG---------ATTTTTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : C------AGCGAAT-GTGAGTTGC-G--A--------AGAGG---CAGAGAGAATACAGTGGACATTTAACGGAT--GATAgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG---------ATTTTTTTAA---ACAAATTTAATACATCCTCTTTGCATgcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG-A-CAA-A---------ACT---G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-T-TTCAAGA-CAATCCTA--AAT-CTACTA-------G------A--acgtaagtgcagtgggacca
gi|14 : ggtTCGTATG-T-GTC-GCGGATC-GACATCGTACA-CGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTA-CGC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACA-ATGG-ATG--CATAGC-GTTTTCAGACGGATGGCTAG---------ATTTTTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactcgttcgtatgataagacaaacgtctggatgatcgagactaAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-C-CCC-AGG-C-ATCCCA--AAC-ATACGA-------G------A--TACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T----------T--------TTTA------GTTCTG-TG-C-TACAAACGATATATAGACATTCCCATGT--------A--------CCT------T--ATCGTTCTAACC-TCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG-A-CAA-A---------ATT---G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-A-TCC-AGA-C-ATCCTA--AAT-ATACGA-------A------A--TGCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG-A-CAA-A---------ATT---G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-C-TC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAA-AAAAA---------ACT---T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG-G-CAA-A---------ATT---G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG-A-CAA-A---------ATT---T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-C-TCC-AGA-C-ATCCTA--AAT-A--CGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T----------T--------TCTA------TTTCAG-TG-C-TACTAACGATGTATAGACGTT-CCATGG--------A--------CAT------T--ATCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGC------AGCGGAT-GTGAGTTGC--------------GAGTATGCCCAGAGGGT---GCAGA---------AAG--GATACAACGGACGTTTAACGGATGA------------------TAACGGACATAGAACGTTTG---TTGCTCGTATA-T-GTC-GCGGATT-GACATCGTACC-CGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTG-CGC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACA-TTGG-ATG--CACAGC-GTTTTCCAACGGATGGCAAG--------CTTTTGTTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTG-CGT-GGATGAAATCACAGT-------------------------CAGTGGA-----CG---AAAATGCGTATGC-AATGAGTACACA-GC-GGATG--CATAGC-GTTTTACAACGGAATGCAA----------TTTGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCTA--AAT-ATGCGA-------G------A--TTTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T----------T--------TCTT------TTTCCG-TG-C-TACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAGAT------TTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG-A-CAACA---------ATTGCATAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGC-TCT-AGAAC-ATCCTG--AAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTAATGTA-TTTCCG-TA-CCTACTAAGAGTGTAATGAGGTT-CCATATGCATGTATA--------CCT------T--ATCCCCCCCCCCCTCTTTTCGTTTT-CAGC---TGT------AGCGGAT-GTGAGTT----------TGC---GAGGATGCCCAAAGGATA---CAGA----TAG-------GATACAGAGGACGGTTTAACGGATGA-----------------TGACGAACATCTAGCTTTTG---TTGCTCGTATA-TTGTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACA-AC-GAATG--CATAGCGGTTTTCCAATGGATGGCAGGATTT----TTTTGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA-AACAAAATTGTAGACAATT---T-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-C-TCC-AAA-C-ATCCTA--AATTATACGA-------G------A--TGCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT----------T--------TCTA------TTTCCG-TG-C-TACTAAAGATGTATAGATGCT-CCATGT--------A--------GCT------G--ATCTTTCCTCCC-TCTTTCCGTTTGTC--------------------------AGCTGCAG--CGGATG------GGA-GTTGGGAGGATTC---------TCAAAGGAT--G---CAGAGAGGATAAAGGGAACATTTAACGGAGGATACA-------GGAAATAGAACGTTTG---TTGCTCGTATA-T-GTC-GCGGATT-GAC----------GGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTG-CGC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACA-AC-GAAAA--CATAGC-GTTCACCAACGAAAGACAAG---------ATTGT-------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG-A-CAACA---------ATTGCATAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGC-TCT-AGA-C-ATCCTA--GAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTACATGTATTTCCG-TC-C-TACTAACGATGTATAGAGGTT-CCATATGCATGTATA--------CCT------T--ATCCCCCCCCCC-TCTTTTCGTTTT-CAGC---TGT------AGCGGAT-GTGAGTTGC-G--A-----------GGATGCCCAAAGGAT--------------ACAGATAGGATACAGAGGACGTTTAACGGATGA------------------TGACGAACATCTAGCTTTTG---TTGCTCGTATA-T-GTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTG-CGC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACA-AC-GAATG--CATAGC-GTTTTCCAATGGATGGCAGGATTT----TTTTGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG-A-CA-TA---------ATT---T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-C-TCC-AGA-C-ATCCTA--AAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------TTGTACATCACT--------TCTA------CTTCCG-TG-C-TACTAACGATATATAGACGTT-CCATGT--------A--------CCT------T--ATCTTTGCCCCC-TCTTTCCGTTTTTCCGC---TAG------AGCGGAT-GTGAGTTGC---------GC-----GGATGCAGAGAGGATACAGCGGAAGTTTAACGGAT--GATAgtaatttaagtgcagtgggatcgg
gi|6 : gt-TAACGGACAAAGAACGTTTGAAATTGCTCGTATAAT-GTC-GCGGATT-GAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTG-CAC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACA-ACGG-ATG--CGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTTTTGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCacggacaaagaacgtttgaaattgctcgtataatgtcgcggattgaccgaaaagttcatccgttctacaagtgttgtgcagctcaaaactttttgcacgaatgaaatcacagtggacggatgctcgatggacagagcgtacgaaatacgtacaaaacacaacggatgcgtagcgttttccaacgaatgacaagttagatttttttgttttacgttttacatcccctttgcatccgcatgtgcagtgaaaccggg
gi|7 : gtccggtcccactggtcgatggacacaaaacgtatgcaagaaggacacagcggacaagcaaatttcgggcttccatccgtttttatccgctccaaatatggacataatttgcgaaaatagaacggaagagaacggacgagagtagaatgtagcgtggatgttaaacggctgttcatctgacgccaagcggatggaagtgagtgacagctccgacattctccagacatcctaaatatacgagatacatcccagatacaaacgctttgtccgttttgaatactttatatacgagatgcatatgcttgtacatcacttctacttccgtgctactaacgatatatagacgttccatgtaccttatctttgccccctctttccgtttttccgctagagcggatgtgagttgcgcggatgcagagaggatacagcggaagtttaacggatgaTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG-A-CAA-A---------ATT---------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-C-TCC-AGA-C-ATCCTA--AAT-ATATGA-------A------A--TACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACG------------C---------------T----------TACATCTTATCTA------TTTCCG-TG-C-CACTAACGATGCATAGACGTT-ACATGT--------A--------CCT------C--ATCTTTCCTCCC-TC--TCCGTTTTTCAGC---TGC------AGCGGAT-GTGAGTTGC-G--AGGATGCCC-----------AGAGGACACAGCGGACGTTTAACGGAT--GATAgcatgtgcagtgaaaccggg
gi|7 : -TAACGGACTTGAAAAGTTTG---TTGCTTGTATA-T-GTC-GCGGATT-GACATCGTACA-CGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTA-CAC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACA-ATGG-ATG--CATAGC-ATTTTCCAATGGATGGCAAG--------TTTTTTTTA-----AC--ATTT--TACATCCTCTTTGCATCCacggacttgaaaagtttgttgcttgtatatgtcgcggattgacatcgtacacggtgggaagtccatccgttctaaaagttttgtgcggcttgaaactttttacacaaatgaaatcacagtggacggggtgctcgatggatagagcgtatgaaatacttttgcaatgagtacacaatggatgcatagcattttccaatggatggcaagttttttttaacattttacatcctctttgcatccgtaagtgcagtaggaccg
gi|8 : tggccaatggacgcaaaacgtacgcgtatgcaaaaaggacacagcggacgagcaaaattttagggttggctccatccgttttcatccgctccgggaatggacaaaattggggaagaacgaacgagggtagtgtgtagtggggatgttaaacagctgttcatcggaagcctagcggatggaagtggacgacagctccgacacactccagacatcctaaatatatgaaatacatccctaaacactttgtccattttgaatactttatatacgagatacatatacgcttacatcttatctatttccgtgccactaacgatgcatagacgttacatgtacctcatctttcctccctctccgtttttcagctgcagcggatgtgagttgcgaggatgcccagaggacacagcggacgtttaacggatgaAATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATCCG-----------CTCCAGAAATGT-A-CAACA----------TT---T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-A-CCTCT-CGA-C-ATACTACAGAC-ATCC-------------------TACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C----------C--------TCTT------ATCCTG-TG-C-TACTAACGATGTATAGACGTT-CCATGT--------AGAACTGTACCT------T--ATCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGC------AGCGGAT--TGAGTTGC-A--AGGATGCCCA-----------GAGGATGCAG------------AGAG--GATACAGCGGACGTTTAGCGGATGA------------------TAACGGACATGGAACGTTTG-------------A-T-G----CGGATT-GGCATCGTACA-CGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNN-NNN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACA-GCAG-ATG--CATAGC-GTTTTTAAACGGATGGCAAGATTTGATTTTTTTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-A-AAC-AGA-C-CGCCTA--AAT-ATA-GA-------GGATAATG--TACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TG---------T--------CCTA------TTTCCGGTGGC-CACTAAC-ATGTATAGACGTC-CCATGT--------A--------CCTTACATGT--ATCTTTCCCCCC-TCTTTCCA-ATTTCAGCCTGTGCACAGCTAGCGGATAGTGAGGTGC-GTTA-AATGCCC-----------AGAGGATACAGCGGACGTTGAACGGAT--GATAggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
gi|9 : cccggtcccactcgccgatggacacaaaacgtttgcgagaaggacacaagcagacgatcaaaatttcgggttggctccatccgttttcatccgctctagaaatggtgggaaaaatgcaaatagaacgacgaggatagtatgtagtgggatgtttaaaggccgttcatcgggaggctagtggatggaagtgggtgaacagactccgaccaaataaaaacagaccgcctaaatatagaggataatgtacatcccagattaaagtccgtcttgaacacggggggggtgggggggggggggggggggggggggggAACG-ACAGAGAACGTTT-------CTCGTAT--T-GTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTG-CGCGGGATGAAATC----T-GGAC--GATGT------------TCGaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222 222222222222222 22222222222222 1111111111111111111111111111111111111111111111111111 22222222 11111111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111111111 33333333
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 33 2 5 2 888888888888 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 8 3 3 3 33 2 44444444444444 33 77777 2 3 1111111111111111111111111111111111111111111111111111 88888 999999 3 6 3 66666666 33333333 44 999999 3 666 999999 3 3 44 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 666 999 3 3 3 0 1 7777 3 3 3 3 33 1 777777777777 2 2 7 0 3 77777777 9 888888 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . .. . . . ............ .. . .. . . ..... ...... . . . ............... . .. ... . . . . . .. . .............. .. ..... . . .................................................... ..... ...... . . . ........ ........ .. ...... . ... ...... . . .. ........................................................................................ ... ... . . . . . .... . . . . .. . ............ . . . . . ........ . ...... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 77 7 3 7 666666666666 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 6 1 1 1 99 9 44444444444444 99 77777 3 3 7777777777777777777777777777777777777777777777777777 33333 666666 3 7 6 44444444 22222222 66 666666 3 444 666666 3 3 66 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 444 666 3 3 3 2 2 1111 3 3 1 3 88 3 111111111111 4 0 3 6 3 77777777 2 555555 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AG-AC-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TC-----TA------TTTCCG-TG-CTACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------T-CTTTCCTCCCTCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAG-TTGCG--AGGATGCCC--------C-CA-GAGGATACAGCGGACGTTTAACGGATGATA-CAG------------------GGAC-GT---TTAACGGATG-ATAACGGACATAGAACGTTTG---TTGCTCGTAT-A-TGTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTTTGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AG-AC-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TC-----TA------TTTCCG-TG-CTACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------T-CTTTCCTCCCTCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAG-TTGCG--AGGATGCCC---GGATGC-CA-GAGGATACAGCGGACGTTTAACGGATGATA-CAG----A-------------GGAC-GT---TTAACGGACGNATAACGGACATAGAACGTTTG---TTGCTCGTAT-A-TGTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------TTTTTNTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG--G-CGA-CACTT----------T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-CTCC-AG-AC-ATCCT--AAAT-ACACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T----------T--------TC-----TA------TTTCCA-TG-ATACTAACGATGTATAGACGTT-CCA--------TGT--------GCCTT--A------T-CTTTTCTCCCCCTTCCCGTTTGTCAGC---TGCA------GCGGAT-GTGAG-TTGCG--AGAATGTCCAGAGAATGCAGA-GAGGATACAGCGGACATTTAACGGATGATA-TAT----ATTAATTAATATCTACAT-GTATATTAATTAATATCTAACGGACATAGAACGTTTG---TTGCTCTTTT-G-TGTC-GCGGATT-GATATCGTACA-CGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAGA-AT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACATGATGCAGAGC-GTTTTCCAACGGATGGCAA---------TGTTGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|10 : CCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG--A-CAA-AA-TT----------G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AG-AC-ATATG--AAAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATATGCATGTACACATC--T---------------T----------T--------TT-----TA------TTTCCG-TG-CTACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTAAA------T-CTTTCCTCCCTCTTTCCGTTTTTTAGC---AGCA------GCAGAT-AGGTG-TAGCA--AGGATGCCC---A------CA-GAGGATACAGCAGACGATTAACGGATG----------------------------------------------ATAACGGACACAGAACGCATG---CTGCTCGTAT-A-TGTC-GCCAATT-GACATCGTAAA-C
gi|11 : CTTT--A------T-CTTTCCTCTGTCTTTCCGTTTTTCAGA---TGCA------G---------GG-TTGCG--AGGATGCCCATAGGATGC-AGTGAGGATACAGCGAATGTTTAACGAAT----------------------------------------------CATAACGGACGTGGAACGTTTT---TTGCTCGTAT-G-TGTC-GTGGGTT-GACATCGTACA-CGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTGC-GC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGTGTCCATAGC-GTTTTCTAACGAATGACAAG-------ATTT--TTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : CA------GCGAAT-GTGAG-TTGCG--AAGAGGC-----AGA-------GAGAATACAGTGGACATTTAACGGATGATAGCAGACATA-------------GAAC-G----TTAACgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG-------ATTTTTTTAA-----ACAAATTTAATACATCCTCTTTGCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG--A-CAA-AA-CT----------G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-TTTCAAG-ACAATCCT--AAAT-CTACTA-------G------A--acgtaagtgcagtgggacca
gi|14 : ggtTCGTAT-G-TGTC-GCGGATC-GACATCGTACA-CGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTAC-GC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACAATGGATGCATAGC-GTTTTCAGACGGATGGCTAG-------ATTT--TTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactcgttcgtatgataagacaaacgtctggatgatcgagactaAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-CCCC-AG-GC-ATCCC--AAAC-ATACGA-------G------A--TACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T----------T--------TT-----TA------GTTCTG-TG-CTACAAACGATATATAGACATTCCCA--------TGT--------ACCTT--A------T-CGTTCTAACCTCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG--A-CAA-AA-TT----------G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-ATCC-AG-AC-ATCCT--AAAT-ATACGA-------A------A--TGCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-CTC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAAA-AAA-AA-CT----------T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG--G-CAA-AA-TT----------G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-CTCC-AG-AC-ATCCT--AAAT-A--CGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T----------T--------TC-----TA------TTTCAG-TG-CTACTAACGATGTATAGACGTT-CCA--------TGG--------ACATT--A------T-CTTTCCTCCCTCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAG-TTGCG--AGTATGC----------C-CA-GAGGGTGCAG---------AAAG---GATA-CAA----C-------------GGAC-GT---TTAACGGATG-ATAACGGACATAGAACGTTTG---TTGCTCGTAT-A-TGTC-GCGGATT-GACATCGTACC-CGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTGC-GC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACATTGGATGCACAGC-GTTTTCCAACGGATGGCAAG-------CTTTTG-TTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTGC-GT-GGATGAAATCACAGT-CAGT-GGA----------------CGA-AAAT---GCGTA-----------TGC-AATGAGTACACAGCGGATGCATAGC-GTTTTACAACGGAATGCAA----------TTTGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCT--AAAT-ATGCGA-------G------A--TTTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T----------T--------TC-----TT------TTTCCG-TG-CTACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAGA------TTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGAAC-ATCCT--GAAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAA--CTTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTAATGTA------TTTCCG-TACCTACTAAGAGTGTAATGAGGTT-CCATATGCATGTAT--------ACCTT--A------TCCCCCCCCCCCTCTTTTCG-TTTTCAGC---TGTA------GCGGAT-GTGAGTTTGCG--AGGATGC----------C-CA-AAGGATACAG----------ATAG--GATA-CAG----A-------------GGACGGT---TTAACGGATG-ATGACGAACATCTAGCTTTTG---TTGCTCGTAT-ATTGTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGCGGTTTTCCAATGGATGGCAGGATT----TTTTTGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA--AACAA-AA-TTGTAGACAATTT-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-CTCC-AA-AC-ATCCT--AAATTATACGA-------G------A--TGCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT----------T--------TC-----TA------TTTCCG-TG-CTACTAAAGATGTATAGATGCT-CCA--------TGT--------AGCTG--A------T-CTTTCCTCCCTCTTTCCGTTTGTCAGC---TGCA------GCGGAT-GGGAG-TTGGG--AGGATTCTC-----------A-AAGGATGCAG------------AGAGGATA-AAG----G-------------GAAC-AT---TTAACGGA-GGATACAGGAAATAGAACGTTTG---TTGCTCGTAT-A-TGTC-GCGGATT-GAC----------GGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTGC-GC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACAACGAAAACATAGC-GTTCACCAACGAAAGACAAG-------ATTGT---------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AG-AC-ATCCT--AGAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TC-----TACATGTATTTCCG-TC-CTACTAACGATGTATAGAGGTT-CCA--------TATGCATGTATACCTT--A------T-CCCCCCCCCCTCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAG-TTGCG--AGGATGCCC-----------A-AAGGATACAG----------ATAG--GATA-CAG----A-------------GGAC-GT---TTAACGGATG-ATGACGAACATCTAGCTTTTG---TTGCTCGTAT-A-TGTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGC-GC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGC-GTTTTCCAATGGATGGCAGGATT----TTTTTGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG--A-CAT-AA-TT----------T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-CTCC-AG-AC-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------TTGTACATCACT--------TC-----TA------CTTCCG-TG-CTACTAACGATATATAGACGTT-CCA--------TGT--------ACCTT--A------T-CTTTGCCCCCTCTTTCCGTTTTTCCGC---TAGA------GCGGAT-GTGAG-TTGCG--CGGATG--C---AG------A-GAGGATACAGCGGAAGTTTAACGGATG----------------------------------------------ATAACGGACAAAGAACGTTTGAAATTGCTCGTATAA-TGTC-GCGGATT-GAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTGC-AC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACAACGGATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTTTTGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtaatttaagtgcagtgggatcgg
gi|7 : gtTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG--A-CAA-AA-TT----------------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-CTCC-AG-AC-ATCCT--AAAT-ATATGA-------A------A--TACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACG------------C---------------T----------TACATCTTATC-----TA------TTTCCG-TG-CCACTAACGATGCATAGACGTT-ACA--------TGT--------ACCTC--A------T-CTTTCCTCCCTC--TCCGTTTTTCAGC---TGCA------GCGGAT-GTGAG-TTGCG--AGGATGC----------C-CA-GAGGACACAGCGGACGTTTAACGGATG----------------------------------------------ATAACGGACTTGAAAAGTTTG---TTGCTTGTAT-A-TGTC-GCGGATT-GACATCGTACA-CGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTAC-AC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACAATGGATGCATAGC-ATTTTCCAATGGATGGCAAG-------TTTTT-TTTA-----AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|8 : AATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATC-----------CGCTCCAGAAATGT--A-CAA-CA-TT----------T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-ACCTCT-CG-AC-ATACTACAGAC-ATCC-------------------TACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C----------C--------TC-----TT------ATCCTG-TG-CTACTAACGATGTATAGACGTT-CCATGTAGAACTGT--------ACCTT--A------T-CTTTCCTCCCTCTTTCCGTTTTTCAGC---TGCA------GCGGAT--TGAG-TTGCA--AGGATGC----------C-CA-GAGGATGCAG------------AGAGGATA-CAG----C-------------GGAC-GT---TTAGCGGATG-ATAACGGACATGGAACGTTTG-----------AT--------GCGGATT-GGCATCGTACA-CGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNNN-NN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCAGATGCATAGC-GTTTTTAAACGGATGGCAAGATTTGATTTTTTTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-AAAC-AG-AC-CGCCT--AAAT-ATA-GA-------GGATAATG--TACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TG---------T--------CC-----TA------TTTCCGGTGGCCACTAAC-ATGTATAGACGTC-CCA--------TGT--------ACCTT--ACATGTAT-CTTTCCCCCCTCTTTCCAATTT-CAGCCTGTGCACAGCTAGCGGATAGTGAG-GTGCGTTAA-ATGCCC-----------A-GAGGATACAGCGGACGTTGAACGGATGATA---------------------------------------------AACG-ACAGAGAACGTTT-------CTCGTAT---TGTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTGC-GCGGGATGAAATC----T-GGAC--GATGT------------TCGggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222 222222222222222 22222222222222 1111111111111111111111111111111111111111111111111111 111111 33333333333333333 44444444444 555555555555555555555555555555555555555555555555555555 11111 111111111111 33333333
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 33 2 5 2 888888888888 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 5 2 3 3 3 33 2 44444444444444 33 77777 4 3 1111111111111111111111111111111111111111111111111111 777777 3 3 3 3 00000000000000000 44 999999 3 3 666 999999 3 3 44 5 22222222222 888888888888888888888888888888888888888888888888888888 44 11 44444 555 44 66 3 3 3 3 0 1 7777 3 3 3 3 33 1 777777777777 2 2 7 0 3 33333333 555 888888 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . .. . . . ............ .. . .. . . ..... ...... . . . ............... . .. ... . . . . . . .. . .............. .. ..... . . .................................................... ...... . . . . ................. .. ...... . . ... ...... . . .. . ........... ...................................................... .. .. ..... ... .. .. . . . . . . .... . . . . .. . ............ . . . . . ........ ... ...... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 77 7 3 7 666666666666 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 7 9 1 1 1 99 9 44444444444444 99 77777 4 3 7777777777777777777777777777777777777777777777777777 999999 3 3 3 6 88888888888888888 66 666666 3 2 444 666666 3 3 66 9 66666666666 444444444444444444444444444444444444444444444444444444 66 22 22222 888 66 22 3 3 3 3 2 2 1111 3 3 1 3 88 3 111111111111 4 0 3 6 3 99999999 111 555555 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-C-TCC-AGA-C-ATCCTA--AAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCATGT--------A--------CCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCC-----------AGAGGATACAGCGGA-----AA-GGA-GATA-CAG-----G------------GA-CG-T-----TTAACGGATGAT--AACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-C-TCC-AGA-C-ATCCTA--AAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCATGT--------A--------CCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCC--------C-CAGAGGATACAGCGGACGTTTAACGGATGATA-CAG-----G------------GA-CG-T-----TTAACGGATGAT--AACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG--G-CGA-CACTT----------T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-C-TCC-AGA-C-ATCCTA--AAT-ACACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCA-TG-A-TACTAACGATGTATAGACGTT-CCATGT--------G--------CCTT--A------TCTTTTCTCCC-CCTTCCCGTTTGTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGAATGTCCAGAGAATGCAGAGAGGATACAGCGGACATTTAACGGATGATA-TAT-----ATTAATTAATATCTA-CA-TGTATATTAATTAAT-ATCTAACGGACATAGAACGTTTG-----TTG---CT--CTTTT-GT-GTC-GCGGATT-GATATCGTACA-CGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAGA-AT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACATGATGCAGAGC-GTTTTCCAACGGATGGCAA---------TGT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|10 : CCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG--A-CAA-AA-TT----------G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-C-TCC-AGA-C-ATATGA--AAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATATGCATGTACACATC--T---------------T----------T--------TTTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCATGT--------A--------CCTTAAA------TCTTTCCTCCC-TCTTTCCGTTTTTTAGC---AGCA------GCAGAT-AGGTGTA-GCA--AGGATGCCC--------A-CAGAGGATACAGCAGACG---A--------------------------------------------TTAACGGATGAT--AACGGACACAGAACGCATG-----CTG---CT--CGTAT-AT-GTC-GCCAATT-GACATCGTAAA-C
gi|11 : --------CTTT--A------TCTTTCCTCTG-TCTTTCCGTTTTTCAGA---TGCA------G---------GGTT-GCG--AGGATGCCC-----------ATAGGATGCAGTG------------AGGATA-CAGC----G------------AA-TG-T-----TTAACGAATCAT--AACGGACGTGGAACGTTTT-----TTG---CT--CGTAT-GT-GTC-GTGGGTT-GACATCGTACA-CGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTGC-GC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGTGTCCATAGC-GTTTTCTAACGAATGACAAG-------ATTT---TTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : CA------GCGAAT-GTGAGTT-GCG--AAGAGGCAG-----------AGAGAATACAGTGGACATTTAACGGATGATAGCAGACATAG------------AA-CG-------TTAACgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG-------ATTT-TTTTAA-----ACAAATTTAATACATCCTCTTTGCATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG--A-CAA-AA-CT----------G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-T-TTCAAGA-CAATCCTA--AAT-CTACTA-------G------A--acgtaagtgcagtgggacca
gi|14 : ggt-CG-T-----T---CGTATGAT--AA--GACA---AACGTCTGGATGATCGAGACTATCGTAT-GT-GTC-GCGGATC-GACATCGTACA-CGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTAC-GC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACAATGGATGCATAGC-GTTTTCAGACGGATGGCTAG-------ATTT---TTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-C-CCC-AGG-C-ATCCCA--AAC-ATACGA-------G------A--TACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T----------T--------TTTA------GTTCTG-TG-C-TACAAACGATATATAGACATTCCCATGT--------A--------CCTT--A------TCGTTCTAACC-TCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG--A-CAA-AA-TT----------G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-A-TCC-AGA-C-ATCCTA--AAT-ATACGA-------A------A--TGCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-C-TC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAAA-AAA-AA-CT----------T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG--G-CAA-AA-TT----------G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-C-TCC-AGA-C-ATCCTA--AAT-A--CGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T----------T--------TCTA------TTTCAG-TG-C-TACTAACGATGTATAGACGTT-CCATGG--------A--------CATT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGTATG--C--------C-CAGAGGGTGCAG---------AAAG---GATA-CAAC----G------------GA-CG-T-----TTAACGGATGAT--AACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACC-CGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTGC-GC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACATTGGATGCACAGC-GTTTTCCAACGGATGGCAAG-------CTTT-TG-TTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTGC-GT-GGATGAAATCACAGT-CAGT-GGA----------------CGA-AAAT---GCGTA-----------TGC-AATGAGTACACAGCGGATGCATAGC-GTTTTACAACGGAATGCAA----------TT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCTA--AAT-ATGCGA-------G------A--TTTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T----------T--------TCTT------TTTCCG-TG-C-TACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAG-------ATTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGC-TCT-AGAAC-ATCCTG--AAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTAATGTA-TTTCCG-TA-CCTACTAAGAGTGTAATGAGGTT-CCATATGCATGTATA--------CCTT--A------TCCCCCCCCCCCTCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTTTGCG--AGGATGCCC-----------AAAGGATACAG----------ATAG--GATA-CAGA----G------------GA-CGGT-----TTAACGGATGAT--GACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-ATTGTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGCGGTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA--AACAA-AA-TTGTAGACAATTT-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-C-TCC-AAA-C-ATCCTA--AATTATACGA-------G------A--TGCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT----------T--------TCTA------TTTCCG-TG-C-TACTAAAGATGTATAGATGCT-CCATGT--------A--------GCTG--A------TCTTTCCTCCC-TCTTTCCGTTTGTCAGC---TGCA------GCGGAT-GGGAGTT-GGG--AGGAT--TC--------T-CAAAGGATGCAG------------AGAGGATA-AAG-----G------------GAACA-T-----TTAACGGAGGAT--ACAGGAAATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GAC----------GGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTGC-GC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACAACGAAAACATAGC-GTTCACCAACGAAAGACAAG-------A--T-TGT-------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGC-TCT-AGA-C-ATCCTA--GAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTACATGTATTTCCG-TC-C-TACTAACGATGTATAGAGGTT-CCATATGCATGTATA--------CCTT--A------TCCCCCCCCCC-TCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTT-GCG--AGGATGCCC-----------AAAGGATACAG----------ATAG--GATA-CAGA----G------------GA-CG-T-----TTAACGGATGAT--GACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-AT-GTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGC-GC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGC-GTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG--A-CAT-AA-TT----------T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-C-TCC-AGA-C-ATCCTA--AAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------TTGTACATCACT--------TCTA------CTTCCG-TG-C-TACTAACGATATATAGACGTT-CCATGT--------A--------CCTT--A------TCTTTGCCCCC-TCTTTCCGTTTTTCCGC---TAGA------GCGGAT-GTGAGTT-GCG--CGGATG--C--------A-GAGAGGATACAGCGGA-----A------------------------------------G-T-----TTAACGGATGAT--AACGGACAAAGAACGTTTGAAA--TTG---CT--CGTATAAT-GTC-GCGGATT-GAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTGC-AC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACAACGGATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTTT-TGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtaatttaagtgcagtgggatcgg
gi|7 : gtTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG--A-CAA-AA-TT----------------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-C-TCC-AGA-C-ATCCTA--AAT-ATATGA-------A------A--TACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACG------------C---------------T----------TACATCTTATCTA------TTTCCG-TG-C-CACTAACGATGCATAGACGTT-ACATGT--------A--------CCTC--A------TCTTTCCTCCC-TC--TCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATG--C--------C-CAGAGGACACAGC----------------------------G------------GA-CG-T-----TTAACGGATGAT--AACGGACTTGAAAAGTTTG-----TTG---CT--TGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTAC-AC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACAATGGATGCATAGC-ATTTTCCAATGGATGGCAAG-------TTTT-T-TTTA-----AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|8 : AATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATCCG-----------CTCCAGAAATGT--A-CAA-CA-TT----------T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-A-CCTCT-CGA-C-ATACTACAGAC-ATCC-------------------TACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C----------C--------TCTT------ATCCTG-TG-C-TACTAACGATGTATAGACGTT-CCATGT--------AGAACTGTACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT--TGAGTT-GCA--AGGATGCCC-----------AGAGGATGCAG------------AGAGGATA-CAGC----G------------GA-CG-T-----TTAGCGGATGAT--AACGGACATGGAACGTTTG------------------AT--------GCGGATT-GGCATCGTACA-CGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNNN-NN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCAGATGCATAGC-GTTTTTAAACGGATGGCAAGATTTGATTTTT-TTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-A-AAC-AGA-C-CGCCTA--AAT-ATA-GA-------GGATAATG--TACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TG---------T--------CCTA------TTTCCGGTGGC-CACTAAC-ATGTATAGACGTC-CCATGT--------A--------CCTT--ACATGTATCTTTCCCCCC-TCTTTCCAATTT-CAGCCTGTGCACAGCTAGCGGATAGTGAGGT-GCGTTAA-ATGCCC-----------AGAGGATACAGCGGACGTTGAACGGATGATA------------------------------------------------AACG-ACAGAGAACGTTT------------CT--CGTAT--T-GTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTGC-GCGGGATGAAATC----T-GGAC--GATGT------------TCGggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111 111111111111111111111
lowQualScore : 222222222222 222222222222222 22222222222222 111111111111111111111111111111111111111111111 111111 11111111 22222222 111111111111111111111 11111 111111111111 33333333
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 33 2 5 2 888888888888 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 8 3 3 3 33 2 44444444444444 33 77777 4 3 111111111111111111111111111111111111111111111 777777 3 3 3 3 33333333 66666666 44 999999 3 3 666 999999 3 3 44 44 0 222222222222222222222 3 44444 555 44 66 3 3 3 3 0 1 7777 3 3 3 3 33 1 777777777777 2 2 7 0 3 33333333 555 888888 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . .. . . . ............ .. . .. . . ..... ...... . . . ............... . .. ... . . . . . .. . .............. .. ..... . . ............................................. ...... . . . . ........ ........ .. ...... . . ... ...... . . .. .. . ..................... . ..... ... .. .. . . . . . . .... . . . . .. . ............ . . . . . ........ ... ...... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 77 7 3 7 666666666666 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 6 1 1 1 99 9 44444444444444 99 77777 4 3 777777777777777777777777777777777777777777777 999999 3 3 3 6 22222222 44444444 66 666666 3 2 444 666666 3 3 66 66 1 111111111111111111111 1 22222 888 66 22 3 3 3 3 2 2 1111 3 3 1 3 88 3 111111111111 4 0 3 6 3 99999999 111 555555 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T-T----------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCC--CAGAGGATACAGCGGA-AGGG--TACAG-GGA-CG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTATA-T-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T-T----------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCC--CAGAGGATACAGCGGAAAGGAGATACAG-GGA-CG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTATA-T-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG--G-CGA-CACTT----------T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ACACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T-T----------TCTA------TTTCCA-TG-A-TACTAACGATGTATAGACGTT-CCA--------TGT--------GCCTT--A------TCTTTTCTCCC-CCTTCCCGTTTGTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGAATGTC--CAGAGAATGCAG-----AGAGGATACAGCGGA-CA-TTTAACGGATGATA
gi|1 : TAACGGACATAGAACGTTTG-----TTG---CT--CTTTTG-T-GTC-GCGGATT-GATATCGTACA-CGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAGA-AT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACATGATGCAGAGC-GTTTTCCAACGGATGGCAA---------TGT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCAtatattaattaatatctacatgtatattaattaatatctaacggacatagaacgtttgttgctcttttgtgtcgcggattgatatcgtacacggcggacagttcatccgttctaaaagttttgtgcagctcaaaacttttagaatggatgaagtcgcagtggacagacgctcgatggatacagcatgtggaatacgcatgcaatgagtacacacatgatgcagagcgttttccaacggatggcaatgttgttttacgttttacatcctctttgcatcca
gi|10 : ccagccccattggccgatggacacaaaacgtatgcaaaaaggacacagcaaacgagcaaaatttcgaggttggctccatccgttttcatccgctccaaaaattggcgacactttgcaaaaacagaacggaaaagaaaggacgagggtagtgtgtagcggggatgttaaacggctgttcatcggaagcctaacggatggacgcaaatgacagctcctacatactccagacatcctaaatacacgagatacatcccagatacaaacgctttgtccgctttgaatactttatatatgagatgcatactttctatttccatgatactaacgatgtatagacgttccatgtgccttatcttttctcccccttcccgtttgtcagctgcagcggatgtgagttgcgagaatgtccagagaatgcagagaggatacagcggacatttaacggatgatatatattaattaatatctacatgtatattaattaatatcCCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG--A-CAA-AA-TT----------G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATATG--AAAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATATGCATGTACACATC--T---------------T-T----------TTTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTAAA------TCTTTCCTCCC-TCTTTCCGTTTTTTAGC---AGCA------GCAGAT-AGGTGTA-GCA--AGGATGCCCACAGAGGATACAGC----------------AGA-CG-ATTAACGGATGATAACGGACACAGAACGCATG-----CTG---CT--CGTATA-T-GTC-GCCAATT-GACATCGTAAA-C
gi|11 : CTTT--A------TCTTTCCTCTG-TCTTTCCGTTTTTCAGA---TGCA------G---------GGTT-GCG--AGGATGCC--CATAGGATGCAGTG---AGGA--TACAGCGAA-TG-TTTAACGAATCATAACGGACGTGGAACGTTTT-----TTG---CT--CGTATG-T-GTC-GTGGGTT-GACATCGTACA-CGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTGC-GC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGTGTCCATAGC-GTTTTCTAACGAATGACAAG-------ATTT---TTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : CA------GCGAAT-GTGAGTT-GCG--AAGAGGCA--GAGAGAATACAGTGGA-----------------CA-TTTAACGGATGATAGCAGACATAGAACGTTgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG-------ATTT-TTTTAA-----ACAAATTTAATACATCCTCTTTGCATaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG--A-CAA-AA-CT----------G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-TTTCAAGA-CAATCCT--AAAT-CTACTA-------G------A--acgtaagtgcagtgggacca
gi|14 : ggt-CG-TT---CGTATGATAA--GACA---AACGTCTGGATGATCGAGACTATCGTATG-T-GTC-GCGGATC-GACATCGTACA-CGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTAC-GC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACAATGGATGCATAGC-GTTTTCAGACGGATGGCTAG-------ATTT---TTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-CCCC-AGG-C-ATCCC--AAAC-ATACGA-------G------A--TACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T-T----------TTTA------GTTCTG-TG-C-TACAAACGATATATAGACATTCCCA--------TGT--------ACCTT--A------TCGTTCTAACC-TCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG--A-CAA-AA-TT----------G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-ATCC-AGA-C-ATCCT--AAAT-ATACGA-------A------A--TGCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-CTC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAAA-AAA-AA-CT----------T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG--G-CAA-AA-TT----------G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-CTCC-AGA-C-ATCCT--AAAT-A--CGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T-T----------TCTA------TTTCAG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGG--------ACATT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGTATGCC--CAGAGGGT---GCAGAAAG--GATACAACGGA-CG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTATA-T-GTC-GCGGATT-GACATCGTACC-CGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTGC-GC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACATTGGATGCACAGC-GTTTTCCAACGGATGGCAAG-------CTTT-TG-TTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTGC-GT-GGATGAAATCACAGT-CAGT-GGA----------------CGA-AAAT---GCGTA-----------TGC-AATGAGTACACAGCGGATGCATAGC-GTTTTACAACGGAATGCAA----------TT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCT--AAAT-ATGCGA-------G------A--TTTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T-T----------TCTT------TTTCCG-TG-C-TACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAG-------ATTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGAAC-ATCCT--GAAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T-T----------TCTAATGTA-TTTCCG-TA-CCTACTAAGAGTGTAATGAGGTT-CCA--------TATGCATGTATACCTT--A------TCCCCCCCCCCCTCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTTTGCG--AGGATGCC--CAAAGGATACAG---ATAGGA--TACAGAGGA-CGGTTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTATA-TTGTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGCGGTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA--AACAA-AA-TTGTAGACAATTT-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-CTCC-AAA-C-ATCCT--AAATTATACGA-------G------A--TGCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT-T----------TCTA------TTTCCG-TG-C-TACTAAAGATGTATAGATGCT-CCA--------TGT--------AGCTG--A------TCTTTCCTCCC-TCTTTCCGTTTGTCAGC---TGCA------GCGGAT-GGGAGTT-GGG--AGGATTCT--CAAAGGATGCAG-----AGAGGATAAAG-GGAACA-TTTAACGGAGGATACAGGAAATAGAACGTTTG-----TTG---CT--CGTATA-T-GTC-GCGGATT-GAC----------GGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTGC-GC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACAACGAAAACATAGC-GTTCACCAACGAAAGACAAG-------A--T-TGT-------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGA-C-ATCCT--AGAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T-T----------TCTACATGTATTTCCG-TC-C-TACTAACGATGTATAGAGGTT-CCA--------TATGCATGTATACCTT--A------TCCCCCCCCCC-TCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTT-GCG--AGGATGCC--CAAAGGATACAG---ATAGGA--TACAGAGGA-CG-TTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTATA-T-GTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGC-GC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGC-GTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG--A-CAT-AA-TT----------T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------T-TGTACATCACTTCTA------CTTCCG-TG-C-TACTAACGATATATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTGCCCCC-TCTTTCCGTTTTTCCGC---TAGA------GCGGAT-GTGAGTT-GCG--CGGATGCA--GAGAGGATACAGCGGAA-----------------G-TTTAACGGATGATAACGGACAAAGAACGTTTGAAA--TTG---CT--CGTATAAT-GTC-GCGGATT-GAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTGC-AC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACAACGGATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTTT-TGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtaatttaagtgcagtgggatcgg
gi|7 : gtTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG--A-CAA-AA-TT----------------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-CTCC-AGA-C-ATCCT--AAAT-ATATGA-------A------A--TACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACGCTTACAT-----C---------------T-TA---------TCTA------TTTCCG-TG-C-CACTAACGATGCATAGACGTT-ACA--------TGT--------ACCTC--A------TCTTTCCTCCC-TCT--CCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCC--CAGAGGACACAGCGGA-----------------CG-TTTAACGGATGATAACGGACTTGAAAAGTTTG-----TTG---CT--TGTATA-T-GTC-GCGGATT-GACATCGTACA-CGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTAC-AC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACAATGGATGCATAGC-ATTTTCCAATGGATGGCAAG-------TTTT-T-TTTA-----AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|8 : AATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATC-----------CGCTCCAGAAATGT--A-CAA-CA-TT----------T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-ACCTCT-CGA-C-ATACTACAGAC-ATCC-------------------TACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C-C----------TCTT------ATCCTG-TG-C-TACTAACGATGTATAGACGTT-CCATGTAGAACTGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT--TGAGTT-GCA--AGGATGCC--CAGAGGATGCAG-----AGAGGATACAGCGGA-CG-TTTAGCGGATGATAACGGACATGGAACGTTTG------------------AT--------GCGGATT-GGCATCGTACA-CGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNNN-NN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCAGATGCATAGC-GTTTTTAAACGGATGGCAAGATTTGATTTTT-TTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-AAAC-AGA-C-CGCCT--AAAT-ATA-GA-------GGATAATG--TACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TGT----------CCTA------TTTCCGGTGGC-CACTAAC-ATGTATAGACGTC-CCA--------TGT--------ACCTT--ACATGTATCTTTCCCCCC-TCTTTCCAATTT-CAGCCTGTGCACAGCTAGCGGATAGTGAGGT-GCGTTAA-ATGCC--CAGAGGATACAGCGGA-----------------CG-TTGAACGGATGATAAACGACAGAGAACGTTT------------CT--CGTAT--T-GTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTGC-GCGGGATGAAATC----T-GGAC--GATGT------------TCGggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 222222222222 222222222222222 22222222222222 1111111111111111111111111111111111111111111 111111 11111111 22222222 111111 7777777777777777777 11111 111111111111 33333333
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 33 2 5 2 888888888888 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 8 3 3 3 33 2 44444444444444 44 77777 4 3 6666666666666666666666666666666666666666666 3 777777 3 3 3 3 33333333 66666666 444444 3 3 666 999999 3 3 44 44 6666666666666666666 3 44444 555 44 66 3 3 3 3 0 1 7777 3 3 3 3 33 1 777777777777 2 2 7 0 3 33333333 555 888888 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . .. . . . ............ .. . .. . . ..... ...... . . . ............... . .. ... . . . . . .. . .............. .. ..... . . ........................................... . ...... . . . . ........ ........ ...... . . ... ...... . . .. .. ................... . ..... ... .. .. . . . . . . .... . . . . .. . ............ . . . . . ........ ... ...... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 77 7 3 7 666666666666 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 6 1 1 1 99 9 44444444444444 22 77777 4 3 1111111111111111111111111111111111111111111 3 999999 3 3 3 6 22222222 44444444 222222 3 2 444 666666 3 3 66 66 2222222222222222222 1 22222 888 66 22 3 3 3 3 2 2 1111 3 3 1 3 88 3 111111111111 4 0 3 6 3 99999999 111 555555 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T-TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTA------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCA--GAGGATACAGCGGA-AGGATACAG-GGA-CG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T-TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTA------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCA--GAGGATACAGCGGA-AGGGTACAG-GGA-CG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG--G-CGA-CACTT----------T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ACACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T----------T-TCTA------TTTCCA-TG-A-TACTAACGATGTATAGACGTT-CCA--------TGT--------GCCTTA------TCTTTTCTCCC-CCTTCCCGTTTGTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGAATGTCCA--GAGAATGCAGAG---AGGATACAGCGGA-CA-TTTAACGGATGATA
gi|1 : TAACGGACATAGAACGTTTG-----TTG---CT--CTTTT-GT-GTC-GCGGATT-GATATCGTACA-CGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAGA-AT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACATGATGCAGAGC-GTTTTCCAACGGATGGCAA---------TGT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCAtatattaattaatatctacatgtatattaattaatatctaacggacatagaacgtttgttgctcttttgtgtcgcggattgatatcgtacacggcggacagttcatccgttctaaaagttttgtgcagctcaaaacttttagaatggatgaagtcgcagtggacagacgctcgatggatacagcatgtggaatacgcatgcaatgagtacacacatgatgcagagcgttttccaacggatggcaatgttgttttacgttttacatcctctttgcatcca
gi|10 : ccagccccattggccgatggacacaaaacgtatgcaaaaaggacacagcaaacgagcaaaatttcgaggttggctccatccgttttcatccgctccaaaaattggcgacactttgcaaaaacagaacggaaaagaaaggacgagggtagtgtgtagcggggatgttaaacggctgttcatcggaagcctaacggatggacgcaaatgacagctcctacatactccagacatcctaaatacacgagatacatcccagatacaaacgctttgtccgctttgaatactttatatatgagatgcatactttctatttccatgatactaacgatgtatagacgttccatgtgccttatcttttctcccccttcccgtttgtcagctgcagcggatgtgagttgcgagaatgtccagagaatgcagagaggatacagcggacatttaacggatgatatatattaattaatatctacatgtatattaattaatatcCCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG--A-CAA-AA-TT----------G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATATG--AAAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATA----------------TGCATGTACACATCT-T----------T-TTTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTAAA----TCTTTCCTCCC-TCTTTCCGTTTTTTAGC---AGCA------GCAGAT-AGGTGTA-GCA--AGGATGCCCACAGAGGATACAGCAGA---------------CG-ATTAACGGATGATAACGGACACAGAACGCATG-----CTG---CT--CGTAT-AT-GTC-GCCAATT-GACATCGTAAA-C
gi|11 : CTTTA------TCTTTCCTCTG-TCTTTCCGTTTTTCAGA---TGCA------G---------GGTT-GCG--AGGATGCCCA--TAGGATGCAGTG---AGGATACAGCGAA-TG-TTTAACGAATCATAACGGACGTGGAACGTTTT-----TTG---CT--CGTAT-GT-GTC-GTGGGTT-GACATCGTACA-CGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTGC-GC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGTGTCCATAGC-GTTTTCTAACGAATGACAAG-------ATTT---TTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : CA------GCGAAT-GTGAGTT-GCG--AAGAGGCAGA--GAGAATACAGTGGA---------------CA-TTTAACGGATGATAGCAGACATAGAACGTTgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG-------ATTT-TTTTAA-----ACAAATTTAATACATCCTCTTTGCATaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG--A-CAA-AA-CT----------G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-TTTCAAGA-CAATCCT--AAAT-CTACTA-------G------Aacgtaagtgcagtgggacca
gi|14 : ggt-CG-TT---CGTATGATAA--GACA---AACGTCTGGATGATCGAGACTATCGTAT-GT-GTC-GCGGATC-GACATCGTACA-CGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTAC-GC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACAATGGATGCATAGC-GTTTTCAGACGGATGGCTAG-------ATTT---TTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-CCCC-AGG-C-ATCCC--AAAC-ATACGA-------G------AT--ACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T----------T-TTTA------GTTCTG-TG-C-TACAAACGATATATAGACATTCCCA--------TGT--------ACCTTA------TCGTTCTAACC-TCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG--A-CAA-AA-TT----------G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-ATCC-AGA-C-ATCCT--AAAT-ATACGA-------A------AT--GCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-CTC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAAA-AAA-AA-CT----------T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG--G-CAA-AA-TT----------G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-CTCC-AGA-C-ATCCT--AAAT-A--CGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T----------T-TCTA------TTTCAG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGG--------ACATTA------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGTATGCCCA--GAGGGTGCA--GAA-AGGATACAACGGA-CG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACC-CGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTGC-GC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACATTGGATGCACAGC-GTTTTCCAACGGATGGCAAG-------CTTT-TG-TTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTGC-GT-GGATGAAATCACAGT-CAGT-GGA----------------CGA-AAAT---GCGTA-----------TGC-AATGAGTACACAGCGGATGCATAGC-GTTTTACAACGGAATGCAA----------TT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCT--AAAT-ATGCGA-------G------AT--TTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T----------T-TCTT------TTTCCG-TG-C-TACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAG-------ATTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGAAC-ATCCT--GAAT-ATACGAAATACATG------AT--ACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T-TCTAATGTA-TTTCCG-TA-CCTACTAAGAGTGTAATGAGGTT-CCA--------TATGCATGTATACCTTA------TCCCCCCCCCCCTCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTTTGCG--AGGATGCCCA--AAGGATACAG---ATAGGATACAGAGGA-CGGTTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-ATTGTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGCGGTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA--AACAA-AA-TTGTAGACAATTT-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-CTCC-AAA-C-ATCCT--AAATTATACGA-------G------AT--GCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT----------T-TCTA------TTTCCG-TG-C-TACTAAAGATGTATAGATGCT-CCA--------TGT--------AGCTGA------TCTTTCCTCCC-TCTTTCCGTTTGTCAGC---TGCA------GCGGAT-GGGAGTT-GGG--AGGATTCTCA--AAGGATGCAGAG---AGGATAAAG-GGAACA-TTTAACGGAGGATACAGGAAATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GAC----------GGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTGC-GC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACAACGAAAACATAGC-GTTCACCAACGAAAGACAAG-------A--T-TGT-------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGA-C-ATCCT--AGAT-ATACGAAATACATG------AT--ACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T-TCTACATGTATTTCCG-TC-C-TACTAACGATGTATAGAGGTT-CCA--------TATGCATGTATACCTTA------TCCCCCCCCCC-TCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTT-GCG--AGGATGCCCA--AAGGATACAG---ATAGGATACAGAGGA-CG-TTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-AT-GTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGC-GC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGC-GTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG--A-CAT-AA-TT----------T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------TTGTACATCACT-TCTA------CTTCCG-TG-C-TACTAACGATATATAGACGTT-CCA--------TGT--------ACCTTA------TCTTTGCCCCC-TCTTTCCGTTTTTCCGC---TAGA------GCGGAT-GTGAGTT-GCG--CGGATGCAGA--GAGGATACAGCGGA-A--------------G-TTTAACGGATGATAACGGACAAAGAACGTTTGAAA--TTG---CT--CGTATAAT-GTC-GCGGATT-GAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTGC-AC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACAACGGATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTTT-TGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtaatttaagtgcagtgggatcgg
gi|7 : gtTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG--A-CAA-AA-TT----------------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-CTCC-AGA-C-ATCCT--AAAT-ATATGA-------A------AT--ACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACGCTTACAT-----C---------------T----------TATCTA------TTTCCG-TG-C-CACTAACGATGCATAGACGTT-ACA--------TGT--------ACCTCA------TCTTTCCTCCC-TCT--CCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCA--GAGGACACAGCGGA---------------CG-TTTAACGGATGATAACGGACTTGAAAAGTTTG-----TTG---CT--TGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTAC-AC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACAATGGATGCATAGC-ATTTTCCAATGGATGGCAAG-------TTTT-T-TTTA-----AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|8 : AATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATC-----------CGCTCCAGAAATGT--A-CAA-CA-TT----------T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-ACCTCT-CGA-C-ATACTACAGAC-ATCC-----------------T--ACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C----------C-TCTT------ATCCTG-TG-C-TACTAACGATGTATAGACGTT-CCATGTAGAACTGT--------ACCTTA------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT--TGAGTT-GCA--AGGATGCCCA--GAGGATGCAGAG---AGGATACAGCGGA-CG-TTTAGCGGATGATAACGGACATGGAACGTTTG------------------AT--------GCGGATT-GGCATCGTACA-CGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNNN-NN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCAGATGCATAGC-GTTTTTAAACGGATGGCAAGATTTGATTTTT-TTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-AAAC-AGA-C-CGCCT--AAAT-ATA-GA-------GGATAATGT--ACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TG---------T-CCTA------TTTCCGGTGGC-CACTAAC-ATGTATAGACGTC-CCA--------TGT--------ACCTTACATGTATCTTTCCCCCC-TCTTTCCAATTT-CAGCCTGTGCACAGCTAGCGGATAGTGAGGT-GCGTTAA-ATGCCCA--GAGGATACAGCGGA---------------CG-TTGAACGGATGATAAACGACAGAGAACGTTT------------CT--CGTAT--T-GTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTGC-GCGGGATGAAATC----T-GGAC--GATGT------------TCGggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 222222222222 222222222222222 22222222222222 1111111111111111111111111111111111111111111 111111 11111111 22222222 555555555555555 11111 111111111111 33333333
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 33 2 5 2 888888888888 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 8 3 3 3 33 2 44444444444444 44 77777 4 3 6666666666666666666666666666666666666666666 3 777777 3 3 3 3 33333333 66666666 999999 44 3 666 999999 3 3 44 44 888888888888888 3 3 44444 555 44 66 3 3 3 3 0 1 7777 3 3 3 3 33 1 777777777777 2 2 7 0 3 33333333 555 888888 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . .. . . . ............ .. . .. . . ..... ...... . . . ............... . .. ... . . . . . .. . .............. .. ..... . . ........................................... . ...... . . . . ........ ........ ...... .. . ... ...... . . .. .. ............... . . ..... ... .. .. . . . . . . .... . . . . .. . ............ . . . . . ........ ... ...... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 77 7 3 7 666666666666 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 6 1 1 1 99 9 44444444444444 22 77777 4 3 1111111111111111111111111111111111111111111 3 999999 3 3 3 6 22222222 44444444 666666 66 3 444 666666 3 3 66 66 555555555555555 1 1 22222 888 66 22 3 3 3 3 2 2 1111 3 3 1 3 88 3 111111111111 4 0 3 6 3 99999999 111 555555 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T-TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCT------TA--TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGC------AGCGGAT-GTGAGTT-GCG--AGGATGCCCA--GAGGATGCAGCG-A-AGGATACAGCGGA-CG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGA-TTGACATCGTAC-ACGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T-TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCT------TA--TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGC------AGCGGAT-GTGAGTT-GCG--AGGATGCCCA--GAGGATACAGCGGA-AGGATACAG-GGA-CG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGA-TTGACATCGTAC-ACGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG--G-CGA-CACTT----------T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ACACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T----------T-TCTA------TTTCCA-TG-A-TACTAACGATGTATAGACGTT-CCA--------TGT--------GCCT------TA--TCTTTTCTCCC-CCTTCCCGTTTGTCAGC---TGC------AGCGGAT-GTGAGTT-GCG--AGAATGTCCA--GAGAATGCAGAG---AGGATACAGCGGA-CA-TTTAACGGATGATA
gi|1 : TAACGGACATAGAACGTTTG-----TTG---CT--CTTTT-GT-GTC-GCGGA-TTGATATCGTAC-ACGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAGA-AT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACATGATGCAGAGC-GTTTTCCAACGGATGGCAA---------TGT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCAtatattaattaatatctacatgtatattaattaatatctaacggacatagaacgtttgttgctcttttgtgtcgcggattgatatcgtacacggcggacagttcatccgttctaaaagttttgtgcagctcaaaacttttagaatggatgaagtcgcagtggacagacgctcgatggatacagcatgtggaatacgcatgcaatgagtacacacatgatgcagagcgttttccaacggatggcaatgttgttttacgttttacatcctctttgcatcca
gi|10 : ccagccccattggccgatggacacaaaacgtatgcaaaaaggacacagcaaacgagcaaaatttcgaggttggctccatccgttttcatccgctccaaaaattggcgacactttgcaaaaacagaacggaaaagaaaggacgagggtagtgtgtagcggggatgttaaacggctgttcatcggaagcctaacggatggacgcaaatgacagctcctacatactccagacatcctaaatacacgagatacatcccagatacaaacgctttgtccgctttgaatactttatatatgagatgcatactttctatttccatgatactaacgatgtatagacgttccatgtgccttatcttttctcccccttcccgtttgtcagctgcagcggatgtgagttgcgagaatgtccagagaatgcagagaggatacagcggacatttaacggatgatatatattaattaatatctacatgtatattaattaatatcCCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG--A-CAA-AA-TT----------G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATATG--AAAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATA----------------TGCATGTACACATCT-T----------T-TTTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCT------TAAATCTTTCCTCCC-TCTTTCCGTTTTTTAGC---AGC------AGCAGAT-AGGTGTA-GCA--AGGATGCCCACAGAGGATACAGCAGA---------------CG-ATTAACGGATGATAACGGACACAGAACGCATG-----CTG---CT--CGTAT-AT-GTC-GCCAA-TTGACATCGTAA-AC
gi|11 : CTT------TA--TCTTTCCTCTG-TCTTTCCGTTTTTCAGA---TGC------AG---------GGTT-GCG--AGGATGCCCA--TAGGATGCAGTG---AGGATACAGCGAA-TG-TTTAACGAATCATAACGGACGTGGAACGTTTT-----TTG---CT--CGTAT-GT-GTC-GTGGG-TTGACATCGTAC-ACGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTGC-GC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGTGTCCATAGC-GTTTTCTAACGAATGACAAG-------ATTT---TTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : C------AGCGAAT-GTGAGTT-GCG--AAGAGGC--A--GAG------------AGAATACAGTGGA-CA-TTTAACGGATGATAGCAGACATAGAACGTTgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG-------ATTT-TTTTAA-----ACAAATTTAATACATCCTCTTTGCATaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG--A-CAA-AA-CT----------G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-TTTCAAGA-CAATCCT--AAAT-CTACTA-------G------Aacgtaagtgcagtgggacca
gi|14 : ggt-CG-TT---CGTATGATAA--GACA---AACGTCTGGATGATCGAGACTATCGTAT-GT-GTC-GCGGA-TCGACATCGTAC-ACGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTAC-GC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACAATGGATGCATAGC-GTTTTCAGACGGATGGCTAG-------ATTT---TTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-CCCC-AGG-C-ATCCC--AAAC-ATACGA-------G------AT--ACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T----------T-TTTA------GTTCTG-TG-C-TACAAACGATATATAGACATTCCCA--------TGT--------ACCT------TA--TCGTTCTAACC-TCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG--A-CAA-AA-TT----------G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-ATCC-AGA-C-ATCCT--AAAT-ATACGA-------A------AT--GCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-CTC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAAA-AAA-AA-CT----------T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG--G-CAA-AA-TT----------G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-CTCC-AGA-C-ATCCT--AAAT-A--CGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T----------T-TCTA------TTTCAG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGG--------ACAT------TA--TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGC------AGCGGAT-GTGAGTT-GCG--AGTATGCCCA--GAGGGTGCA--GAA-AGGATACAACGGA-CG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGA-TTGACATCGTAC-CCGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTGC-GC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACATTGGATGCACAGC-GTTTTCCAACGGATGGCAAG-------CTTT-TG-TTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTGC-GT-GGATGAAATCACAGT-CAGT-GGA----------------CGA-AAAT---GCGTA-----------TGC-AATGAGTACACAGCGGATGCATAGC-GTTTTACAACGGAATGCAA----------TT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCT--AAAT-ATGCGA-------G------AT--TTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T----------T-TCTT------TTTCCG-TG-C-TACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAG-------ATTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGAAC-ATCCT--GAAT-ATACGAAATACATG------AT--ACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T-TCTAATGTA-TTTCCG-TA-CCTACTAAGAGTGTAATGAGGTT-CCA--------TATGCATGTATACCT------TA--TCCCCCCCCCCCTCTTTTCGTTTT-CAGC---TGT------AGCGGAT-GTGAGTTTGCG--AGGATGCCCA--AAGGATACAG---ATAGGATACAGAGGA-CGGTTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-ATTGTT-GCGTA-TTGACATCGTAC-ACGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGCGGTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA--AACAA-AA-TTGTAGACAATTT-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-CTCC-AAA-C-ATCCT--AAATTATACGA-------G------AT--GCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT----------T-TCTA------TTTCCG-TG-C-TACTAAAGATGTATAGATGCT-CCA--------TGT--------AGCT------GA--TCTTTCCTCCC-TCTTTCCGTTTGTCAGC---TGC------AGCGGAT-GGGAGTT-GGG--AGGATTCTCA--AAGGATGCAGAG---AGGATAAAG-GGAACA-TTTAACGGAGGATACAGGAAATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGA-TTGAC----------GGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTGC-GC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACAACGAAAACATAGC-GTTCACCAACGAAAGACAAG-------A--T-TGT-------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGA-C-ATCCT--AGAT-ATACGAAATACATG------AT--ACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T-TCTACATGTATTTCCG-TC-C-TACTAACGATGTATAGAGGTT-CCA--------TATGCATGTATACCT------TA--TCCCCCCCCCC-TCTTTTCGTTTT-CAGC---TGT------AGCGGAT-GTGAGTT-GCG--AGGATGCCCA--AAGGATACAG---ATAGGATACAGAGGA-CG-TTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-AT-GTT-GCGTA-TTGACATCGTAC-ACGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGC-GC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGC-GTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG--A-CAT-AA-TT----------T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------TTGTACATCACT-TCTA------CTTCCG-TG-C-TACTAACGATATATAGACGTT-CCA--------TGT--------ACCT------TA--TCTTTGCCCCC-TCTTTCCGTTTTTCCGC---TAG------AGCGGAT-GTGAGTT-GCG--CGGATGCAGA--GAGGATACAGCGGA-A--------------G-TTTAACGGATGATAACGGACAAAGAACGTTTGAAA--TTG---CT--CGTATAAT-GTC-GCGGA-TTGAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTGC-AC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACAACGGATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTTT-TGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtaatttaagtgcagtgggatcgg
gi|7 : gtTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG--A-CAA-AA-TT----------------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-CTCC-AGA-C-ATCCT--AAAT-ATATGA-------A------AT--ACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACGCTTACAT-----C---------------T----------TATCTA------TTTCCG-TG-C-CACTAACGATGCATAGACGTT-ACA--------TGT--------ACCT------CA--TCTTTCCTCCC-TCT--CCGTTTTTCAGC---TGC------AGCGGAT-GTGAGTT-GCG--AGGATGCCCA--GAGGACACAGCGGA---------------CG-TTTAACGGATGATAACGGACTTGAAAAGTTTG-----TTG---CT--TGTAT-AT-GTC-GCGGA-TTGACATCGTAC-ACGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTAC-AC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACAATGGATGCATAGC-ATTTTCCAATGGATGGCAAG-------TTTT-T-TTTA-----AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|8 : AATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATC-----------CGCTCCAGAAATGT--A-CAA-CA-TT----------T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-ACCTCT-CGA-C-ATACTACAGAC-ATCC-----------------T--ACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C----------C-TCTT------ATCCTG-TG-C-TACTAACGATGTATAGACGTT-CCATGTAGAACTGT--------ACCT------TA--TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGC------AGCGGAT--TGAGTT-GCA--AGGATGCCCA--GAGGATGCAGAG---AGGATACAGCGGA-CG-TTTAGCGGATGATAACGGACATGGAACGTTTG------------------AT--------GCGGA-TTGGCATCGTAC-ACGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNNN-NN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCAGATGCATAGC-GTTTTTAAACGGATGGCAAGATTTGATTTTT-TTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-AAAC-AGA-C-CGCCT--AAAT-ATA-GA-------GGATAATGT--ACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TG---------T-CCTA------TTTCCGGTGGC-CACTAAC-ATGTATAGACGTC-CCA--------TGT--------ACCTTACATGTA--TCTTTCCCCCC-TCTTTCCA-ATTTCAGCCTGTGCACAGCTAGCGGATAGTGAGGT-GCGTTA-AATGCCCA--GAGGATACAGC--------------GGA-CG-TTGAACGGATGATAAACGACAGAGAACGTTT------------CT--CGTAT--T-GTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTGC-GCGGGATGAAATC----T-GGAC--GATGT------------TCGggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 222222222222 222222222222222 22222222222222 1111111111111111111111111111111111111111111 111111 11111111 22222222 5555555555 11111 111111111111 33333333
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 33 2 5 2 888888888888 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 8 3 3 3 33 2 44444444444444 33 77777 4 3 6666666666666666666666666666666666666666666 3 777777 3 3 3 3 33333333 66666666 44 999999 3 3 666 999999 3 3 44 0 1 0000000000 3 44444 555 44 66 3 3 3 3 0 1 7777 3 3 3 3 33 1 777777777777 2 2 7 0 3 33333333 555 888888 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . .. . . . ............ .. . .. . . ..... ...... . . . ............... . .. ... . . . . . .. . .............. .. ..... . . ........................................... . ...... . . . . ........ ........ .. ...... . . ... ...... . . .. . . .......... . ..... ... .. .. . . . . . . .... . . . . .. . ............ . . . . . ........ ... ...... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 77 7 3 7 666666666666 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 6 1 1 1 99 9 44444444444444 99 77777 4 3 1111111111111111111111111111111111111111111 3 999999 3 3 3 6 22222222 44444444 66 666666 3 2 444 666666 3 3 66 2 8 7777777777 1 22222 888 66 22 3 3 3 3 2 2 1111 3 3 1 3 88 3 111111111111 4 0 3 6 3 99999999 111 555555 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T-TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAG-GA-AGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGA-TTGACATCGTAC-ACGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T-TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAGCGA-AGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGA-TTGACATCGTAC-ACGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG--G-CGA-CACTT----------T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ACACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T----------T-TCTA------TTTCCA-TG-A-TACTAACGATGTATAGACGTT-CCA--------TGT--------GCCTT--A------TCTTTTCTCCC-CCTTCCCGTTTGTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGAATGTCCAGAGAATGCAGAG--AGGATACAGCGGACA-TTTAACGGATGATA
gi|1 : TAACGGACATAGAACGTTTG-----TTG---CT--CTTTT-GT-GTC-GCGGA-TTGATATCGTAC-ACGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAGA-AT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACATGATGCAGAGC-GTTTTCCAACGGATGGCAA---------TGT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCAtatattaattaatatctacatgtatattaattaatatctaacggacatagaacgtttgttgctcttttgtgtcgcggattgatatcgtacacggcggacagttcatccgttctaaaagttttgtgcagctcaaaacttttagaatggatgaagtcgcagtggacagacgctcgatggatacagcatgtggaatacgcatgcaatgagtacacacatgatgcagagcgttttccaacggatggcaatgttgttttacgttttacatcctctttgcatcca
gi|10 : ccagccccattggccgatggacacaaaacgtatgcaaaaaggacacagcaaacgagcaaaatttcgaggttggctccatccgttttcatccgctccaaaaattggcgacactttgcaaaaacagaacggaaaagaaaggacgagggtagtgtgtagcggggatgttaaacggctgttcatcggaagcctaacggatggacgcaaatgacagctcctacatactccagacatcctaaatacacgagatacatcccagatacaaacgctttgtccgctttgaatactttatatatgagatgcatactttctatttccatgatactaacgatgtatagacgttccatgtgccttatcttttctcccccttcccgtttgtcagctgcagcggatgtgagttgcgagaatgtccagagaatgcagagaggatacagcggacatttaacggatgatatatattaattaatatctacatgtatattaattaatatcCCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG--A-CAA-AA-TT----------G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATATG--AAAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATATGCATGTACACATC--T---------------T----------T-TTTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTAAA------TCTTTCCTCCC-TCTTTCCGTTTTTTAGC---AGCA------GCAGAT-AGGTGTA-GCA--AGGATGCCCA-------CAG----AGGATACAGCAGACG-ATTAACGGATGATAACGGACACAGAACGCATG-----CTG---CT--CGTAT-AT-GTC-GCCAA-TTGACATCGTAA-AC
gi|11 : CTTT--A------TCTTTCCTCTG-TCTTTCCGTTTTTCAGA---TGCA------G---------GGTT-GCG--AGGATGCCCATAGGATGCAGTGA--GGATACAGCGAATG-TTTAACGAATCATAACGGACGTGGAACGTTTT-----TTG---CT--CGTAT-GT-GTC-GTGGG-TTGACATCGTAC-ACGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTGC-GC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGTGTCCATAGC-GTTTTCTAACGAATGACAAG-------ATTT---TTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : CA------GCGAAT-GTGAGTT-GCG--AAGAGGC--AGAG-----------AGAATACAGTGGACA-TTTAACGGATGATAGCAGACATAGAACGTTgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG-------ATTT-TTTTAA-----ACAAATTTAATACATCCTCTTTGCATaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG--A-CAA-AA-CT----------G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-TTTCAAGA-CAATCCT--AAAT-CTACTA-------G------A--acgtaagtgcagtgggacca
gi|14 : ggtCG-TT---CGTATGATAA--GACA---AACGTCTGGATGATCGAGACTATCGTAT-GT-GTC-GCGGA-TCGACATCGTAC-ACGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTAC-GC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACAATGGATGCATAGC-GTTTTCAGACGGATGGCTAG-------ATTT---TTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-CCCC-AGG-C-ATCCC--AAAC-ATACGA-------G------A--TACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T----------T-TTTA------GTTCTG-TG-C-TACAAACGATATATAGACATTCCCA--------TGT--------ACCTT--A------TCGTTCTAACC-TCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG--A-CAA-AA-TT----------G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-ATCC-AGA-C-ATCCT--AAAT-ATACGA-------A------A--TGCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-CTC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAAA-AAA-AA-CT----------T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG--G-CAA-AA-TT----------G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-CTCC-AGA-C-ATCCT--AAAT-A--CGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T----------T-TCTA------TTTCAG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGG--------ACATT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGTATGCCCAGAGGGTGCAG-AA-AGGATACAACGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGA-TTGACATCGTAC-CCGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTGC-GC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACATTGGATGCACAGC-GTTTTCCAACGGATGGCAAG-------CTTT-TG-TTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTGC-GT-GGATGAAATCACAGT-CAGT-GGA----------------CGA-AAAT---GCGTA-----------TGC-AATGAGTACACAGCGGATGCATAGC-GTTTTACAACGGAATGCAA----------TT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCT--AAAT-ATGCGA-------G------A--TTTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T----------T-TCTT------TTTCCG-TG-C-TACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAG-------ATTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGAAC-ATCCT--GAAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T-TCTAATGTA-TTTCCG-TA-CCTACTAAGAGTGTAATGAGGTT-CCA--------TATGCATGTATACCTT--A------TCCCCCCCCCCCTCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTTTGCG--AGGATGCCCAAAGGATACAG--ATAGGATACAGAGGACGGTTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-ATTGTT-GCGTA-TTGACATCGTAC-ACGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGCGGTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA--AACAA-AA-TTGTAGACAATTT-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-CTCC-AAA-C-ATCCT--AAATTATACGA-------G------A--TGCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT----------T-TCTA------TTTCCG-TG-C-TACTAAAGATGTATAGATGCT-CCA--------TGT--------AGCTG--A------TCTTTCCTCCC-TCTTTCCGTTTGTCAGC---TGCA------GCGGAT-GGGAGTT-GGG--AGGATTCTCAAAGGATGCAGAGA--GGATAAAGGGAACA-TTTAACGGAGGATACAGGAAATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGA-TTGAC----------GGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTGC-GC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACAACGAAAACATAGC-GTTCACCAACGAAAGACAAG-------A--T-TGT-------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGA-C-ATCCT--AGAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T-TCTACATGTATTTCCG-TC-C-TACTAACGATGTATAGAGGTT-CCA--------TATGCATGTATACCTT--A------TCCCCCCCCCC-TCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAAAGGATACAG--ATAGGATACAGAGGACG-TTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-AT-GTT-GCGTA-TTGACATCGTAC-ACGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGC-GC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGC-GTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG--A-CAT-AA-TT----------T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------TTGTACATCACT-TCTA------CTTCCG-TG-C-TACTAACGATATATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTGCCCCC-TCTTTCCGTTTTTCCGC---TAGA------GCGGAT-GTGAGTT-GCG--CGGATG--CAGAG-----------AGGATACAGCGGAAG-TTTAACGGATGATAACGGACAAAGAACGTTTGAAA--TTG---CT--CGTATAAT-GTC-GCGGA-TTGAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTGC-AC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACAACGGATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTTT-TGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtaatttaagtgcagtgggatcgg
gi|7 : gtTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG--A-CAA-AA-TT----------------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-CTCC-AGA-C-ATCCT--AAAT-ATATGA-------A------A--TACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACGCTTACAT-----C---------------T----------TATCTA------TTTCCG-TG-C-CACTAACGATGCATAGACGTT-ACA--------TGT--------ACCTC--A------TCTTTCCTCCC-TCT--CCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGAC-------------ACAGCGGACG-TTTAACGGATGATAACGGACTTGAAAAGTTTG-----TTG---CT--TGTAT-AT-GTC-GCGGA-TTGACATCGTAC-ACGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTAC-AC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACAATGGATGCATAGC-ATTTTCCAATGGATGGCAAG-------TTTT-T-TTTA-----AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|8 : AATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATC-----------CGCTCCAGAAATGT--A-CAA-CA-TT----------T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-ACCTCT-CGA-C-ATACTACAGAC-ATCC-------------------TACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C----------C-TCTT------ATCCTG-TG-C-TACTAACGATGTATAGACGTT-CCATGTAGAACTGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT--TGAGTT-GCA--AGGATGCCCAGAGGATGCAGAG--AGGATACAGCGGACG-TTTAGCGGATGATAACGGACATGGAACGTTTG------------------AT--------GCGGA-TTGGCATCGTAC-ACGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNNN-NN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCAGATGCATAGC-GTTTTTAAACGGATGGCAAGATTTGATTTTT-TTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-AAAC-AGA-C-CGCCT--AAAT-ATA-GA-------GGATAATG--TACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TG---------T-CCTA------TTTCCGGTGGC-CACTAAC-ATGTATAGACGTC-CCA--------TGT--------ACCTT--ACATGTATCTTTCCCCCC-TCTTTCCAATTT-CAGCCTGTGCACAGCTAGCGGATAGTGAGGT-GCGTTAA-ATGCCCAGAGGA-------------TACAGCGGACG-TTGAACGGATGATAAACGACAGAGAACGTTT------------CT--CGTAT--T-GTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTGC-GCGGGATGAAATC----T-GGAC--GATGT------------TCGggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222 222222222222222 22222222222222 1111111111111111111111111111111111111111111111111111 111111 11111111 22222222 111111 22 11111 111111111111 33333333
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 33 2 5 2 888888888888 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 8 3 3 3 33 2 44444444444444 44 77777 4 3 1111111111111111111111111111111111111111111111111111 777777 3 3 3 3 33333333 66666666 444444 3 3 666 999999 3 3 44 0 666 11 3 44444 555 44 66 3 3 3 3 0 1 7777 3 3 3 3 33 1 777777777777 2 2 7 0 3 33333333 555 888888 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . .. . . . ............ .. . .. . . ..... ...... . . . ............... . .. ... . . . . . .. . .............. .. ..... . . .................................................... ...... . . . . ........ ........ ...... . . ... ...... . . .. . ... .. . ..... ... .. .. . . . . . . .... . . . . .. . ............ . . . . . ........ ... ...... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 77 7 3 7 666666666666 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 6 1 1 1 99 9 44444444444444 22 77777 4 3 7777777777777777777777777777777777777777777777777777 999999 3 3 3 6 22222222 44444444 222222 3 2 444 666666 3 3 66 2 555 44 1 22222 888 66 22 3 3 3 3 2 2 1111 3 3 1 3 88 3 111111111111 4 0 3 6 3 99999999 111 555555 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTA------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTA------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAGGAAGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG--G-CGA-CACTT----------T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ACACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCA-TG-A-TACTAACGATGTATAGACGTT-CCA--------TGT--------GCCTTA------TCTTTTCTCCC-CCTTCCCGTTTGTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGAATGTCCAGAGAATGCAGAGAGGATACAGCGGACA-TTTAACGGATGATA
gi|1 : TAACGGACATAGAACGTTTG-----TTG---CT--CTTTT-GT-GTC-GCGGATT-GATATCGTACA-CGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAGA-AT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACATGATGCAGAGC-GTTTTCCAACGGATGGCAA---------TGT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCAtatattaattaatatctacatgtatattaattaatatctaacggacatagaacgtttgttgctcttttgtgtcgcggattgatatcgtacacggcggacagttcatccgttctaaaagttttgtgcagctcaaaacttttagaatggatgaagtcgcagtggacagacgctcgatggatacagcatgtggaatacgcatgcaatgagtacacacatgatgcagagcgttttccaacggatggcaatgttgttttacgttttacatcctctttgcatcca
gi|10 : ccagccccattggccgatggacacaaaacgtatgcaaaaaggacacagcaaacgagcaaaatttcgaggttggctccatccgttttcatccgctccaaaaattggcgacactttgcaaaaacagaacggaaaagaaaggacgagggtagtgtgtagcggggatgttaaacggctgttcatcggaagcctaacggatggacgcaaatgacagctcctacatactccagacatcctaaatacacgagatacatcccagatacaaacgctttgtccgctttgaatactttatatatgagatgcatactttctatttccatgatactaacgatgtatagacgttccatgtgccttatcttttctcccccttcccgtttgtcagctgcagcggatgtgagttgcgagaatgtccagagaatgcagagaggatacagcggacatttaacggatgatatatattaattaatatctacatgtatattaattaatatcCCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG--A-CAA-AA-TT----------G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATATG--AAAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATA----------------TGCATGTACACATCT-T----------T--------TTTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTAAA----TCTTTCCTCCC-TCTTTCCGTTTTTTAGC---AGCA------GCAGAT-AGGTGTA-GCA--AGGATGCCCA-------CAG--AGGATACAGCAGACG-ATTAACGGATGATAACGGACACAGAACGCATG-----CTG---CT--CGTAT-AT-GTC-GCCAATT-GACATCGTAAA-C
gi|11 : CTTTA------TCTTTCCTCTG-TCTTTCCGTTTTTCAGA---TGCA------G---------GGTT-GCG--AGGATGCCCATAGGATGCAGTGAGGATACAGCGAATG-TTTAACGAATCATAACGGACGTGGAACGTTTT-----TTG---CT--CGTAT-GT-GTC-GTGGGTT-GACATCGTACA-CGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTGC-GC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGTGTCCATAGC-GTTTTCTAACGAATGACAAG-------ATTT---TTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : CA------GCGAAT-GTGAGTT-GCG--A--------AGAGG---CAGAGAGAATACAGTGGACA-TTTAACGGATGATAGCAGACATAGAACGTTgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG-------ATTT-TTTTAA-----ACAAATTTAATACATCCTCTTTGCATaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG--A-CAA-AA-CT----------G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-TTTCAAGA-CAATCCT--AAAT-CTACTA-------G------Aacgtaagtgcagtgggacca
gi|14 : ggtCG-TT---CGTATGATAA--GACA---AACGTCTGGATGATCGAGACTATCGTAT-GT-GTC-GCGGATC-GACATCGTACA-CGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTAC-GC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACAATGGATGCATAGC-GTTTTCAGACGGATGGCTAG-------ATTT---TTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-CCCC-AGG-C-ATCCC--AAAC-ATACGA-------G------AT--ACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T----------T--------TTTA------GTTCTG-TG-C-TACAAACGATATATAGACATTCCCA--------TGT--------ACCTTA------TCGTTCTAACC-TCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG--A-CAA-AA-TT----------G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-ATCC-AGA-C-ATCCT--AAAT-ATACGA-------A------AT--GCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-CTC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAAA-AAA-AA-CT----------T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG--G-CAA-AA-TT----------G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-CTCC-AGA-C-ATCCT--AAAT-A--CGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T----------T--------TCTA------TTTCAG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGG--------ACATTA------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGTATGCCCAGAGGGTGCAGAAAGGATACAACGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACC-CGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTGC-GC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACATTGGATGCACAGC-GTTTTCCAACGGATGGCAAG-------CTTT-TG-TTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTGC-GT-GGATGAAATCACAGT-CAGT-GGA----------------CGA-AAAT---GCGTA-----------TGC-AATGAGTACACAGCGGATGCATAGC-GTTTTACAACGGAATGCAA----------TT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCT--AAAT-ATGCGA-------G------AT--TTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T----------T--------TCTT------TTTCCG-TG-C-TACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAG-------ATTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGAAC-ATCCT--GAAT-ATACGAAATACATG------AT--ACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTAATGTA-TTTCCG-TA-CCTACTAAGAGTGTAATGAGGTT-CCA--------TATGCATGTATACCTTA------TCCCCCCCCCCCTCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTTTGCG--AGGATGCCCAAAGGATACAGATAGGATACAGAGGACGGTTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-ATTGTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGCGGTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA--AACAA-AA-TTGTAGACAATTT-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-CTCC-AAA-C-ATCCT--AAATTATACGA-------G------AT--GCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT----------T--------TCTA------TTTCCG-TG-C-TACTAAAGATGTATAGATGCT-CCA--------TGT--------AGCTGA------TCTTTCCTCCC-TCTTTCCGTTTGTCAGC---TGCA------GCGGAT-GGGAGTT-GGG--AGGATTCTCAAAGGATGCAGAGAGGATAAAGGGAACA-TTTAACGGAGGATACAGGAAATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-G---------A-CGGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTGC-GC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACAACGAAAACATAGC-GTTCACCAACGAAAGACAAG-------A--T-TGT-------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGA-C-ATCCT--AGAT-ATACGAAATACATG------AT--ACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTACATGTATTTCCG-TC-C-TACTAACGATGTATAGAGGTT-CCA--------TATGCATGTATACCTTA------TCCCCCCCCCC-TCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAAAGGATACAGATAGGATACAGAGGACG-TTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-AT-GTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGC-GC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGC-GTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG--A-CAT-AA-TT----------T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------AT--ACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------TTGTACATCACT--------TCTA------CTTCCG-TG-C-TACTAACGATATATAGACGTT-CCA--------TGT--------ACCTTA------TCTTTGCCCCC-TCTTTCCGTTTTTCCGC---TAGA------GCGGAT-GTGAGTT-GCG--CGGATG--CAGAG---------AGGATACAGCGGAAG-TTTAACGGATGATAACGGACAAAGAACGTTTGAAA--TTG---CT--CGTATAAT-GTC-GCGGATT-GAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTGC-AC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACAACGGATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTTT-TGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtaatttaagtgcagtgggatcgg
gi|7 : gtTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG--A-CAA-AA-TT----------------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-CTCC-AGA-C-ATCCT--AAAT-ATATGA-------A------AT--ACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACG------------C---------------T----------TACATCTTATCTA------TTTCCG-TG-C-CACTAACGATGCATAGACGTT-ACA--------TGT--------ACCTCA------TCTTTCCTCCC-TC--TCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAG-----------AGGACACAGCGGACG-TTTAACGGATGATAACGGACTTGAAAAGTTTG-----TTG---CT--TGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTAC-AC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACAATGGATGCATAGC-ATTTTCCAATGGATGGCAAG-------TTTT-T-TTTA-----AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|8 : AATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATC-----------CGCTCCAGAAATGT--A-CAA-CA-TT----------T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-ACCTCT-CGA-C-ATACTACAGAC-ATCC-----------------T--ACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C----------C--------TCTT------ATCCTG-TG-C-TACTAACGATGTATAGACGTT-CCATGTAGAACTGT--------ACCTTA------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT--TGAGTT-GCA--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAGCGGATGATAACGGACATGGAACGTTTG------------------AT--------GCGGATT-GGCATCGTACA-CGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNNN-NN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCAGATGCATAGC-GTTTTTAAACGGATGGCAAGATTTGATTTTT-TTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-AAAC-AGA-C-CGCCT--AAAT-ATA-GA-------GGATAATGT--ACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TG---------T--------CCTA------TTTCCGGTGGC-CACTAAC-ATGTATAGACGTC-CCA--------TGT--------ACCTTACATGTATCTTTCCCCCC-TCTTTCCAATTT-CAGCCTGTGCACAGCTAGCGGATAGTGAGGT-GCGTTAA-ATGCCCAGAGGAT-----------ACAGCGGACG-TTGAACGGATGATAAACGACAGAGAACGTTT------------CT--CGTAT--T-GTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTGC-GCGGGATGAAATC----T-GGAC--GATGT------------TCGggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222 222222222222222 22222222222222 1111111111111111111111111111111111111111111111111111 111111 11111111 22222222 11111 111111111111 33333333
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 33 2 5 2 888888888888 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 8 3 3 3 33 2 44444444444444 33 77777 4 3 1111111111111111111111111111111111111111111111111111 777777 3 3 3 3 33333333 66666666 44 999999 3 3 666 999999 3 3 44 1 4 0 3 3 44444 555 44 66 3 3 3 3 0 1 7777 3 3 3 3 33 1 777777777777 2 2 7 0 3 33333333 555 888888 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . .. . . . ............ .. . .. . . ..... ...... . . . ............... . .. ... . . . . . .. . .............. .. ..... . . .................................................... ...... . . . . ........ ........ .. ...... . . ... ...... . . .. . . . . . ..... ... .. .. . . . . . . .... . . . . .. . ............ . . . . . ........ ... ...... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 77 7 3 7 666666666666 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 6 1 1 1 99 9 44444444444444 99 77777 4 3 7777777777777777777777777777777777777777777777777777 999999 3 3 3 6 22222222 44444444 66 666666 3 2 444 666666 3 3 66 8 4 3 1 1 22222 888 66 22 3 3 3 3 2 2 1111 3 3 1 3 88 3 111111111111 4 0 3 6 3 99999999 111 555555 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG--G-CGA-CACTT----------T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ACACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCA-TG-A-TACTAACGATGTATAGACGTT-CCA--------TGT--------GCCTT--A------TCTTTTCTCCC-CCTTCCCGTTTGTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGAATGTCCAGAGAATGCAGAGAGGATACAGCGGACA-TTTAACGGATGATA
gi|1 : TAACGGACATAGAACGTTTG-----TTG---CT--CTTTT-GT-GTC-GCGGATT-GATATCGTACA-CGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAGA-AT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACATGATGCAGAGC-GTTTTCCAACGGATGGCAA---------TGT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCAtatattaattaatatctacatgtatattaattaatatctaacggacatagaacgtttgttgctcttttgtgtcgcggattgatatcgtacacggcggacagttcatccgttctaaaagttttgtgcagctcaaaacttttagaatggatgaagtcgcagtggacagacgctcgatggatacagcatgtggaatacgcatgcaatgagtacacacatgatgcagagcgttttccaacggatggcaatgttgttttacgttttacatcctctttgcatcca
gi|10 : ccagccccattggccgatggacacaaaacgtatgcaaaaaggacacagcaaacgagcaaaatttcgaggttggctccatccgttttcatccgctccaaaaattggcgacactttgcaaaaacagaacggaaaagaaaggacgagggtagtgtgtagcggggatgttaaacggctgttcatcggaagcctaacggatggacgcaaatgacagctcctacatactccagacatcctaaatacacgagatacatcccagatacaaacgctttgtccgctttgaatactttatatatgagatgcatactttctatttccatgatactaacgatgtatagacgttccatgtgccttatcttttctcccccttcccgtttgtcagctgcagcggatgtgagttgcgagaatgtccagagaatgcagagaggatacagcggacatttaacggatgatatatattaattaatatctacatgtatattaattaatatcCCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG--A-CAA-AA-TT----------G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATATG--AAAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATATGCATGTACACATC--T---------------T----------T--------TTTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTAAA------TCTTTCCTCCC-TCTTTCCGTTTTTTAGC---AGCA------GCAGAT-AGGTGTA-GCA--AGGATGCCCA-------C--AGAGGATACAGCAGACG-ATTAACGGATGATAACGGACACAGAACGCATG-----CTG---CT--CGTAT-AT-GTC-GCCAATT-GACATCGTAAA-C
gi|11 : CTTT--A------TCTTTCCTCTG-TCTTTCCGTTTTTCAGA---TGCA------G---------GGTT-GCG--AGGATGCCCATAGGATGCAGTGAGGATACAGCGAATG-TTTAACGAATCATAACGGACGTGGAACGTTTT-----TTG---CT--CGTAT-GT-GTC-GTGGGTT-GACATCGTACA-CGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTGC-GC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGTGTCCATAGC-GTTTTCTAACGAATGACAAG-------ATTT---TTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : CA------GCGAAT-GTGAGTT-GCG--A--------AGAGG---CAGAGAGAATACAGTGGACA-TTTAACGGATGATAGCAGACATAGAACGTTgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG-------ATTT-TTTTAA-----ACAAATTTAATACATCCTCTTTGCATaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG--A-CAA-AA-CT----------G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-TTTCAAGA-CAATCCT--AAAT-CTACTA-------G------A--acgtaagtgcagtgggacca
gi|14 : ggtCG-TT---CGTATGATAA--GACA---AACGTCTGGATGATCGAGACTATCGTAT-GT-GTC-GCGGATC-GACATCGTACA-CGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTAC-GC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACAATGGATGCATAGC-GTTTTCAGACGGATGGCTAG-------ATTT---TTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-CCCC-AGG-C-ATCCC--AAAC-ATACGA-------G------A--TACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T----------T--------TTTA------GTTCTG-TG-C-TACAAACGATATATAGACATTCCCA--------TGT--------ACCTT--A------TCGTTCTAACC-TCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG--A-CAA-AA-TT----------G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-ATCC-AGA-C-ATCCT--AAAT-ATACGA-------A------A--TGCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-CTC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAAA-AAA-AA-CT----------T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG--G-CAA-AA-TT----------G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-CTCC-AGA-C-ATCCT--AAAT-A--CGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T----------T--------TCTA------TTTCAG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGG--------ACATT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGTATGCCCAGAGGGTGCAGAAAGGATACAACGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACC-CGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTGC-GC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACATTGGATGCACAGC-GTTTTCCAACGGATGGCAAG-------CTTT-TG-TTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTGC-GT-GGATGAAATCACAGT-CAGT-GGA----------------CGA-AAAT---GCGTA-----------TGC-AATGAGTACACAGCGGATGCATAGC-GTTTTACAACGGAATGCAA----------TT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCT--AAAT-ATGCGA-------G------A--TTTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T----------T--------TCTT------TTTCCG-TG-C-TACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAG-------ATTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGAAC-ATCCT--GAAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTAATGTA-TTTCCG-TA-CCTACTAAGAGTGTAATGAGGTT-CCA--------TATGCATGTATACCTT--A------TCCCCCCCCCCCTCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTTTGCG--AGGATGCCCAAAGGATACAGATAGGATACAGAGGACGGTTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-ATTGTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGCGGTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA--AACAA-AA-TTGTAGACAATTT-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-CTCC-AAA-C-ATCCT--AAATTATACGA-------G------A--TGCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT----------T--------TCTA------TTTCCG-TG-C-TACTAAAGATGTATAGATGCT-CCA--------TGT--------AGCTG--A------TCTTTCCTCCC-TCTTTCCGTTTGTCAGC---TGCA------GCGGAT-GGGAGTT-GGG--AGGATTCTCAAAGGATGCAGAGAGGATAAAGGGAACA-TTTAACGGAGGATACAGGAAATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-G---------A-CGGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTGC-GC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACAACGAAAACATAGC-GTTCACCAACGAAAGACAAG-------A--T-TGT-------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGA-C-ATCCT--AGAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTACATGTATTTCCG-TC-C-TACTAACGATGTATAGAGGTT-CCA--------TATGCATGTATACCTT--A------TCCCCCCCCCC-TCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAAAGGATACAGATAGGATACAGAGGACG-TTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-AT-GTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGC-GC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGC-GTTTTCCAATGGATGGCAGGATT----TTTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG--A-CAT-AA-TT----------T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------TTGTACATCACT--------TCTA------CTTCCG-TG-C-TACTAACGATATATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTGCCCCC-TCTTTCCGTTTTTCCGC---TAGA------GCGGAT-GTGAGTT-GC--------GC-----GGATGCAGAGAGGATACAGCGGAAG-TTTAACGGATGATAACGGACAAAGAACGTTTGAAA--TTG---CT--CGTATAAT-GTC-GCGGATT-GAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTGC-AC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACAACGGATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTTTTT-TGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtaatttaagtgcagtgggatcgg
gi|7 : gtTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG--A-CAA-AA-TT----------------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-CTCC-AGA-C-ATCCT--AAAT-ATATGA-------A------A--TACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACG------------C---------------T----------TACATCTTATCTA------TTTCCG-TG-C-CACTAACGATGCATAGACGTT-ACA--------TGT--------ACCTC--A------TCTTTCCTCCC-TC--TCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCC-----------AGAGGACACAGCGGACG-TTTAACGGATGATAACGGACTTGAAAAGTTTG-----TTG---CT--TGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTAC-AC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACAATGGATGCATAGC-ATTTTCCAATGGATGGCAAG-------TTTT-T-TTTA-----AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|8 : AATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATC-----------CGCTCCAGAAATGT--A-CAA-CA-TT----------T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-ACCTCT-CGA-C-ATACTACAGAC-ATCC-------------------TACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C----------C--------TCTT------ATCCTG-TG-C-TACTAACGATGTATAGACGTT-CCATGTAGAACTGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT--TGAGTT-GCA--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAGCGGATGATAACGGACATGGAACGTTTG------------------AT--------GCGGATT-GGCATCGTACA-CGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNNN-NN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCAGATGCATAGC-GTTTTTAAACGGATGGCAAGATTTGATTTTT-TTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-AAAC-AGA-C-CGCCT--AAAT-ATA-GA-------GGATAATG--TACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TG---------T--------CCTA------TTTCCGGTGGC-CACTAAC-ATGTATAGACGTC-CCA--------TGT--------ACCTT--ACATGTATCTTTCCCCCC-TCTTTCCAATTT-CAGCCTGTGCACAGCTAGCGGATAGTGAGGT-GCGTTAA-ATGCCCAGAGGAT-----------ACAGCGGACG-TTGAACGGATGATAAACGACAGAGAACGTTT------------CT--CGTAT--T-GTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTGC-GCGGGATGAAATC----T-GGAC--GATGT------------TCGggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
blockSeqs : T T G A C CGCGTA GTATAC T CCTTAAAA A TCCAAGGC G T AA A C . GTAGACAATTT GG C GA C T AAAAG CATGTA T G G CGACTAGTTTTCTAC A AA CAA A G A A A AC T AATACATG TT ATTTT G T TATGCTTACATGTATCCTT CATGTA G G C C TGTAGAAC GCATGTAT AA CATGTA C T CTG CAGCTA A T TT G T G G GATGA AGA AT AA T A T A A TGTG G G A G GG T NNNNNNNNNNGG T A A G TTAGATTT CTT TAAAAA AA AA
blockSeqs : . C . . . . . . . . . . . . . C . GCATA . . . . . . . . G . A . . . . G . . . . . AATACATG . . G . CGCTTATATCCTTTAATT ATGTA . . . . . GCATGTAT . . . T . . . . . G G G . AAA . . A . . . . A . . . G . A T . T T A . ATTTGATT TT A . .
blockSeqs : . . . . . . . . . . . . . . . . . GCATA . . . . . . . . G . . . . . . C . . . . . GGATAAT . . G . TGCATGTACACATCTTT . . . . . . . . . . T . . . . . T G A . . . . G . . . . A . . . G . G T . T G . . ATTT TG A . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . C . . . . . . . . . . . . G . . G . TGCTTGTACATCACT . . . . . . . . . . T . . . . . G A G . . . . G . . . . A . . . A . G A . A T . . ATTT TG A . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . G . . . . . . . . . . . . G . . A . TACGCTTACATCTTA . . . . . . . . . . T . . . . . G A A . . . . A . . . . A . . . A . G T . T A . . A TG T . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . G . . . . . . . . . . . . A . . G . ACGCTTGCATCCTT . . . . . . . . . . T . . . . . G A G . . . . A . . . . A . . . G . A T . T T . . A TG T . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . C . . . . . . . . . . . . G . . A . ACGCTTGCATCCTT . . . . . . . . . . T . . . . . G G G . . . . A . . . . A . . . A . G T . T G . . A TG T . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . G . . . . . . . . . . . . G . . A . CTGT . . . . . . . . . . T . . . . . G G . . . . . A . . . . G . . . A . A N . A G . . C TG T . .
blockSeqs : . . . . . . . . . . . . . . . . . G . . . . . . . . G . . . . . . . . . . . . G . . . . CTT . . . . . . . . . . . . . . . . . . . . . . . A . . . . N . . . A . G T . . G . . A TT T . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . G . . . . . . . . . . . . G . . . . CTT . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . N . N . . . . . . A T A . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . T . . . . . . . . . . . . A . . . . CCC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : A*******
originalCons : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG-------NTTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
finalCons : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAGA-------TTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222 222222222222222 22222222222222 1111111111111111111111111111111111111111111111111111 111111 11111111 22222222 11111 111111111111 3333333333
lowQualScore : 3 5 2 2 2 777777 888888 2 99999999 2 99999999 2 2 33 2 5 2 888888888888 33 2 33 2 2 66666 777777 2 1 2 000000000000000 2 33 555 2 8 3 3 3 33 2 44444444444444 33 77777 4 3 1111111111111111111111111111111111111111111111111111 777777 3 3 3 3 33333333 66666666 44 999999 3 3 666 999999 3 3 44 1 4 0 3 3 44444 555 44 66 3 3 3 3 0 1 7777 3 3 3 3 33 1 777777777777 2 2 7 0 3 1111111111 333 888888 44 44
lowQualScore : . . . . . ...... ...... . ........ . ........ . . .. . . . ............ .. . .. . . ..... ...... . . . ............... . .. ... . . . . . .. . .............. .. ..... . . .................................................... ...... . . . . ........ ........ .. ...... . . ... ...... . . .. . . . . . ..... ... .. .. . . . . . . .... . . . . .. . ............ . . . . . .......... ... ...... .. ..
lowQualScore : 1 3 7 7 7 777777 222222 9 11111111 5 11111111 5 5 77 7 3 7 666666666666 77 7 77 7 7 77777 777777 7 7 7 777777777777777 9 99 000 9 6 1 1 1 99 9 44444444444444 99 77777 4 3 7777777777777777777777777777777777777777777777777777 999999 3 3 3 6 22222222 44444444 66 666666 3 2 444 666666 3 3 66 8 4 3 1 1 22222 888 66 22 3 3 3 3 2 2 1111 3 3 1 3 88 3 111111111111 4 0 3 6 3 2222222222 222 555555 22 22
consensus : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG--A-------TTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
Reference ( family-1973 ) : CCGGT-CCCACTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTCGGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-A-----GAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTTGC-GC-GGATGAAATCGCAGT-GGAC-GGATGC------------TCGATGGATAGAGCGTATGAAATACGTATGC-AATGAGTACACAACGGATGCATAGC-GTTTTCCAACGGATGGCAAG--A-------TTT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCA
gi|1 : CCAGC-CCCATTG-GCCGATGG-ACA-CAAA-ACGTA------TGC------A-AAAAG--------GACAC-AGC--------AAACGAGCAAAA-TTTCGAGGTTGGCTCCATCCGTTTTCAT-CCGCTCCAAAAATTG--G-CGA-CACTT----------T-GCA--AA-AACAGAACGG--AA-A-A-----GAAAGGACGAGGGTAGTG------TGTA-GCGGGGA-TGTTAAACGGCTGTTCATCGGAAGCCTAACGGATGGACGCAAATG---------------ACAG-CTCCT--AC---AT-A-CTCC-AGA-C-ATCCT--AAAT-ACACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGCTTTGAATACTTTATATATGAGA-TGCATA----------------C---------------T----------T--------TCTA------TTTCCA-TG-A-TACTAACGATGTATAGACGTT-CCA--------TGT--------GCCTT--A------TCTTTTCTCCC-CCTTCCCGTTTGTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGAATGTCCAGAGAATGCAGAGAGGATACAGCGGACA-TTTAACGGATGATA
gi|1 : TAACGGACATAGAACGTTTG-----TTG---CT--CTTTT-GT-GTC-GCGGATT-GATATCGTACA-CGGCGGACAGTTCATCCGTTCTAAAAGTTTTGTGCAGCTCAAAACTT----TTAGA-AT-GGATGAAGTCGCAGT-GGAC-AGACGC------------TCGATGGATACAGCATGTGGAATACGCATGC-AATGAGTACACACATGATGCAGAGC-GTTTTCCAACGGATGGCA----A-------TGT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCCAtatattaattaatatctacatgtatattaattaatatctaacggacatagaacgtttgttgctcttttgtgtcgcggattgatatcgtacacggcggacagttcatccgttctaaaagttttgtgcagctcaaaacttttagaatggatgaagtcgcagtggacagacgctcgatggatacagcatgtggaatacgcatgcaatgagtacacacatgatgcagagcgttttccaacggatggcaatgttgttttacgttttacatcctctttgcatcca
gi|10 : ccagccccattggccgatggacacaaaacgtatgcaaaaaggacacagcaaacgagcaaaatttcgaggttggctccatccgttttcatccgctccaaaaattggcgacactttgcaaaaacagaacggaaaagaaaggacgagggtagtgtgtagcggggatgttaaacggctgttcatcggaagcctaacggatggacgcaaatgacagctcctacatactccagacatcctaaatacacgagatacatcccagatacaaacgctttgtccgctttgaatactttatatatgagatgcatactttctatttccatgatactaacgatgtatagacgttccatgtgccttatcttttctcccccttcccgtttgtcagctgcagcggatgtgagttgcgagaatgtccagagaatgcagagaggatacagcggacatttaacggatgatatatattaattaatatctacatgtatattaattaatatcCCGAT-CCCACGG-ACCGATGG-ACA-CACA-ACGTA------TGC------C-AAAAG--------GAAAC-AGC--------AGACGAGCAAAA-TTTCGGGGCTGGCTCCTTCCGTTTTCAT-CCGCTCCAAAAGTGG--A-CAA-AA-TT----------G-GCA--AA-AACAGAACAG--AA-A-A-----GAACGGACAAGGGTAG-------------------A--GTTAAACGACTGTTCATTGGAAGCT------------GTGAATG---------------ACAG-CTCCG--AC---AT-A-CTCC-AGA-C-ATATG--AAAT-ATACGA--------------ATTTACATCCAAG-----ATACAAACGCTTTGTCCGTTTTAAATACTTTATATTCTCGA-TGCATATGCATGTACACATC--T---------------T----------T--------TTTA------TTTCCG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGT--------ACCTTAAA------TCTTTCCTCCC-TCTTTCCGTTTTTTAGC---AGCA------GCAGAT-AGGTGTA-GCA--AGGATGCCCA-------C--AGAGGATACAGCAGACG-ATTAACGGATGATAACGGACACAGAACGCATG-----CTG---CT--CGTAT-AT-GTC-GCCAATT-GACATCGTAAA-C
gi|11 : CTTT--A------TCTTTCCTCTG-TCTTTCCGTTTTTCAGA---TGCA------G---------GGTT-GCG--AGGATGCCCATAGGATGCAGTGAGGATACAGCGAATG-TTTAACGAATCATAACGGACGTGGAACGTTTT-----TTG---CT--CGTAT-GT-GTC-GTGGGTT-GACATCGTACA-CGATGGGAAGTTCATCCGTTCAAAAAGTTATGTGTACTTCAAAACTG----TTTGC-GC-GGATGAAATCATAGT-GGAT-AGATGC------------TCGATGGGTAGAAAATATGAAAAACGTATGC-AATGAGTACATATCGTGTCCATAGC-GTTTTCTAACGAATGACAAG--A-------TTT---TTTA-----AA--GTTA--TA-AT--TCTTTGCATCC
gi|12 : CA------GCGAAT-GTGAGTT-GCG--A--------AGAGG---CAGAGAGAATACAGTGGACA-TTTAACGGATGATAGCAGACATAGAACGTTgtaattgcagtgggatcggg
gi|12 : GT-GCTTTCCAACGGATGGCAAG--A-------TTT-TTTTAA-----ACAAATTTAATACATCCTCTTTGCATaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggtgctttccaacggatggcaagatttttttaaacaaatttaatacatcctctttgcatacgtaagtgcagtgggacca
gi|13 : cagcgaatgtgagttgcgaagaggcagagagaatacagtggacatttaacggatgatagcagacatagaacgttaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngCCGGTTCCCACCCTGCCACTGGGACAACAAA-ACTTA------TGC------A-AAA-G--------GACTC-AGCTCCAAGGCGGACGAGCAAAAGTTTCGAG--TCGCTCCATT-GTATTCATTCCGTTCTAGAGATAG--A-CAA-AA-CT----------G-GCGGGAACAACAGAAAGG--AACA-A-----GAACAGACGAGGG----A------TGTTTGCGGG-A-TGTTAAACATC-GTTCATCGGAATCCTAGCGAATGGAAGTGGATGCGACTAGTTTTCTACATAA-TTCTGAAAC---AT-A-TTTCAAGA-CAATCCT--AAAT-CTACTA-------G------A--acgtaagtgcagtgggacca
gi|14 : ggtCG-TT---CGTATGATAA--GACA---AACGTCTGGATGATCGAGACTATCGTAT-GT-GTC-GCGGATC-GACATCGTACA-CGGCGGAAAGTTCATCCCTTCAAAACGTTTTGTGCAGATCAAAACAT----TTTAC-GC-GGATGAAGTCGCAGT-GGAA-GG------------------------------------AATACGTATGC-AATGGGTACACAATGGATGCATAGC-GTTTTCAGACGGATGGCTAG--A-------TTT---TTTTAAAAAAC--TTTT--AACATCCTCTTTAC
gi|15 : cttgatcatcaaaacgcttcgactAGCGGATGGAAGTGGATG---------------ACAG-CACCG--AC---AT-A-CCCC-AGG-C-ATCCC--AAAC-ATACGA-------G------A--TACATCCTAAATTTTATACAAATGCTTTGTCCGTTTTTAATACTTTATATAGAAGCTTACACC----------------C---------------T----------T--------TTTA------GTTCTG-TG-C-TACAAACGATATATAGACATTCCCA--------TGT--------ACCTT--A------TCGTTCTAACC-TCTTTCCGCTTTTCAGggcgactggaattt
gi|16 : tatgcataccgccccaaacgaacggtaactcttacaaccaagcaaatacgaaaagacagaataggagaaaCGTT-CCCACTG-GCCAATGG-ACA-CAAA-ACGTA------CGCGTATACA-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAAGGTTGGCTCCATCCGTTTTCAT-TCGCTCCAGAAATTG--A-CAA-AA-TT----------G-GGG--AA-GACAGAAAGG--AA-A-A-----GAACGGACGAAGGTAGTA------TGTA-GCGGGGA-TGTTTAAAGGATATTCATCGGAAGCCTAGCGGATGGAAGTGGATG---------------GCAG-CTCCG--AC---AT-A-ATCC-AGA-C-ATCCT--AAAT-ATACGA-------A------A--TGCATCCCAG-----A
gi|17 : G-GCCGATGG-ACA-CAAA-ATGTA------TGC------A-AAAAG--------GGCAC-AGC--------GGACGAGTGAAA-TTTCGGGGTTAGCTCCCTCCGTTTTCGT-CCGCTCCAGAAATGG--A-CAA-AA-TT----------G-GCG--AA-AACAGAGCGG--AA-A-A-----GAACGAACGAGAGTAGTA------TGTA-G-------------------------CGGAAGCCAAGCGGATGGAAGTGCACG---------------ACTG-CTCCG--AC---AT-G-CTC
gi|18 : CCAGT-CCCACTG-ACTAATGG-ACA-CAAA-ACATA------T-C------ATAAAAG--------AACAC-AGA--------AGACAAGCAAAA-TGTTGGTGTTGGCTTCACCCGTTTTCAT-CCGCTCTAGAAATGGAAA-AAA-AA-CT----------T-GCA--GA-AACAGAACGG--AA-A-A------AACTGGCGAGGGTAGTA------TGTA-GCGGGTA-TGTTAAACGGCTGTTCATCGGAtcga
gi|19 : cT-CCCACGG-GCTGATGG-AC--CAAACACGTT------TGA------A-AAAAG--------GACAC-AGC--------AGACGAGCAAAA-TTTCTGGATTGACTCCATCCGTTTTCAT-CCGCTTCAGAAAGGG--G-CAA-AA-TT----------G-GCT--AA-ATTAAAACAG---A-A-A-----GAACAGAAGAATTTAGTA------TTTA-GCCGGGA-AGTTAAACGGTTGTTCATCGGAg
gi|2 : -CCCACTG-TCCGATGG-ACA-CAAA-ACGTA------TAC------A-AAAAG--------GACAC-AGC--------GGACGTGCAAAA-TGTTGGGGTTGGCTCCATCCGTTTTCAT-CCTCTCCAAAAATGG--A-CAA-AA-TT----------T-GCG--AA-AACAGAACGG--AA-A-GAAAAGGAACGGACGAGGGTAGTA------TGTA-GCGGGGA-TGTTAAACGGCTATTCATTGGAGGACTAGCGGATGAAAGTGGATT---------------ACAG-CTTCG--AC---AG-A-CTCC-AGA-C-ATCCT--AAAT-A--CGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCATTTTGAATACTTTGTATACGAGA-TGCATATATGCTTACATGTATCC---------------T----------T--------TCTA------TTTCAG-TG-C-TACTAACGATGTATAGACGTT-CCA--------TGG--------ACATT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGTATGCCCAGAGGGTGCAGAAAGGATACAACGGACG-TTTAACGGATGATAACGGACATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-GACATCGTACC-CGGCGGAAAGTTCATCCGTTCTACTAGTTTCGTGCAGCTC-AAACAT----TTTGC-GC-GGATGCAGTCGCAGT-GGAC-GAATGC------------TCGATGGATATTTCGTATGAAATACGTATGT-AGCGAGTACACATTGGATGCACAGC-GTTTTCCAACGGATGGCAAG--C-------TTT-TG-TTA-----AC--GTTT--TACATCCGCTTTGCTTCCA
gi|2 : ctacCCGGT-CCCACTGCACTACTGG-AAG-CAAA-GCGGA------TGT------A-AAAgtagtgcagtgggaccggg
gi|20 : ctaccccactgtccgatggacacaaaacgtatacaaaaaggacacagcggacgtgcaaaatgttggggttggctccatccgttttcatcctctccaaaaatggacaaaatttgcgaaaacagaacggaaagaaaaggaacggacgagggtagtatgtagcggggatgttaaacggctattcattggaggactagcggatgaaagtggattacagcttcgacagactccagacatcctaaatacgagatacatcccagatacaaacgctttgtccattttgaatactttgtatacgagatgcatatatgcttacatgtatcctttctatttcagtgctactaacgatgtatagacgttccatggacattatctttcctccctctttccgtttttcagctgcagcggatgtgagttgcgagtatgcccagagggtgcagaaaggatacaacggacgtttaacggatgataacggacatagaacgtttgttgctcgtatatgtcgcggattgacatcgtacccggcggaaagttcatccgttctactagtttcgtgcagctcaaacattttgcgcggatgcagtcgcagtggacgaatgctcgatggatatttcgtatgaaatacgtatgtagcgagtacacattggatgcacagcgttttccaacggatggcaagcttttgttaacgCATCCATTCAAAAGGTTTTGTACAGTTCAAAACTT----TTTGC-GT-GGATGAAATCACAGT-CAGT-GGA----------------CGA-AAAT---GCGTA-----------TGC-AATGAGTACACAGCGGATGCATAGC-GTTTTACAACGGAATGCAA------------TT-TGTTTT-----AC--GTTT--TACATCCTCTTTGCATCg
gi|21 : CCT--AAAT-ATGCGA-------G------A--TTTTCCCCAA-----ATACAAGCGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TACATC----------------C---------------T----------T--------TCTT------TTTCCG-TG-C-TACTAACGagtaagtgctgtgagaccgggac
gi|22 : CGGT-CCCACTG-GCTGATGG-ACT-CAAA-ACGTT------TGC------A-AAAAGCCTTAAAAGACAC-AGC--------CAACAAGCAAAA-TTTCAGTGTTGACTCCATCTGTTTTCAT-
gi|23 : GATGGCAAG--A-------TTTCTTTTTT-----AC--GTTT--TACATCCTCTTTGCATCC
gi|3 : G--------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTTGTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGAGTGTTAAACGGATTTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGAAC-ATCCT--GAAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTAATGTA-TTTCCG-TA-CCTACTAAGAGTGTAATGAGGTT-CCA--------TATGCATGTATACCTT--A------TCCCCCCCCCCCTCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTTTGCG--AGGATGCCCAAAGGATACAGATAGGATACAGAGGACGGTTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-ATTGTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGCGGC-GGATGAAATCACAGTGGGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGCGGTTTTCCAATGGATGGCAGG--ATTT----TTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtgtaacagcagtgggtccggag
gi|32 : CCGAT-CCAACTG-GTCGATTG-ACA-CAAA-ACGTA------TGgtaattaaagtgcagtgggatcggag
gi|4 : ttaatgtCGGT-CCCACTA-GCTGATGG-ACA-CTAA-ACGTA------TGT------T-AAAAG--------CACGC-AGC--------AGAAGAGCAAAA-TTTCGGGGTTGGCTCCATTCGTTTTCAT-CGGCTCCAGAAATGA--AACAA-AA-TTGTAGACAATTT-GCG--AA-AACAAAAAAGGAAA-A-A-----GAA-GGACGAGGATAGTACATGTATGTA-GCCTGGA-TATTAAAC---TGTTCATTAGAAGCCTAACGGATGGAGGTGAATG---------------ACAG-CTTCG--AC---AT-A-CTCC-AAA-C-ATCCT--AAATTATACGA-------G------A--TGCATCC-AG-----ATACAAACACTTTATTCATTTTGAATACTTTATATACGAGA-TGCATA----------------CGCTTATATCCTTTAAT----------T--------TCTA------TTTCCG-TG-C-TACTAAAGATGTATAGATGCT-CCA--------TGT--------AGCTG--A------TCTTTCCTCCC-TCTTTCCGTTTGTCAGC---TGCA------GCGGAT-GGGAGTT-GGG--AGGATTCTCAAAGGATGCAGAGAGGATAAAGGGAACA-TTTAACGGAGGATACAGGAAATAGAACGTTTG-----TTG---CT--CGTAT-AT-GTC-GCGGATT-G---------A-CGGCGGAAAGTTCATCAGTTCTGAAAGCTTTGTGCTGCCCACAGCTT----TTTGC-GC-CGATGAAATCGCAGC-GGAC-GAAAGC------------TCGAAATATAGAACGTATGAAATACGTACGC-AATGAGTAAACAACGAAAACATAGC-GTTCACCAACGAAAGACAAG--A---------T-TGT-------------TTT--TACATCCTC-TTGCATCC
gi|5 : --------GGCAC-AGC--------ACACAAGCAAAA-TTTCGAGGTTGAATCCATCTGTTTTCAT-CCGCTCCAGAAATGG--A-CAACAA-TTGCA-------TAGCG--AA-AACAGAACGA--AA-G-A-----GAACGGACGAGGGAAATA------TGTA-GCGGGGA-TGTTAAACGGATGTTCGTCGGAAGCCTAGCGGATGAAAGTGGATG---------------ACAG-TTCCG--AC----T-AGCTCT-AGA-C-ATCCT--AGAT-ATACGAAATACATG------A--TACATCCCAG-----ACACAAAC--TTTGTACGTATTGAATTTTTTATAAACGAGA-TGCATAACGCTTGCATC-----C---------------T----------T--------TCTACATGTATTTCCG-TC-C-TACTAACGATGTATAGAGGTT-CCA--------TATGCATGTATACCTT--A------TCCCCCCCCCC-TCTTTTCGTTTT-CAGC---TGTA------GCGGAT-GTGAGTT-GCG--AGGATGCCCAAAGGATACAGATAGGATACAGAGGACG-TTTAACGGATGATGACGAACATCTAGCTTTTG-----TTG---CT--CGTAT-AT-GTT-GCGTATT-GACATCGTACA-CGGCGGAAAGTTCATCCGTTCTAAACGTTTTGTGCAGCTCAAATCTT----TTTGC-GC-GGATGAAATCACAGT-GGAC-ATATGC------------TCGATGGATAGATCATGTGAAATACCTATGCAAATGAGTATACAACGAATGCATAGC-GTTTTCCAATGGATGGCAGG--ATTT----TTT-TGTTTT-----AC--GTAT--TGTATCTTCTTTGCATCCgtaagtgcattgggg
gi|6 : CCGGT-CCCACTG-GTCGATGG-ACA-CAAA-ACGTA------TGC------A-AGAAG--------GACAC-AGC--------GGACAAGCAAA--TTTCGGGCTT----CCATCCGTTTTTAT-CCGCTCCAAATATGG--A-CAT-AA-TT----------T-GCG--AA-AATAGAACGG--AA-G-A-----GAACGGACGAGAGTAGAA------TGTA-GCGTGGA-TGTTAAACGGCTGTTCATCTGACGCCAAGCGGATGGAAGTGAGTG---------------ACAG-CTCCG--AC---AT-T-CTCC-AGA-C-ATCCT--AAAT-ATACGA-------G------A--TACATCCCAG-----ATACAAACGCTTTGTCCGTTTTGAATACTTTATATACGAGA-TGCATATG--------------C---------------TTGTACATCACT--------TCTA------CTTCCG-TG-C-TACTAACGATATATAGACGTT-CCA--------TGT--------ACCTT--A------TCTTTGCCCCC-TCTTTCCGTTTTTCCGC---TAGA------GCGGAT-GTGAGTT-GC--------GC-----GGATGCAGAGAGGATACAGCGGAAG-TTTAACGGATGATAACGGACAAAGAACGTTTGAAA--TTG---CT--CGTATAAT-GTC-GCGGATT-GAC------------CGAAAAGTTCATCCGTTCTACAAGTGTTGTGCAGCTCAAAACTT----TTTGC-AC-GAATGAAATCACAGT-GGAC-GGATGC------------TCGATGGACAGAGCGTACGAAATACGTA--C-AA--A--ACACAACGGATGCGTAGC-GTTTTCCAACGAATGACAAGTTAGATTT--TTT-TGTTTT-----AC--GTTT--TACATCCCCTTTGCATCCgtaatttaagtgcagtgggatcgg
gi|7 : gtTG-GCCAATGG-ACG-CAAA-ACGTACGCGTATGC------A-AAAAG--------GACAC-AGC--------GGACGAGCAAAA-TTTTAGGGTTGGCTCCATCCGTTTTCAT-CCGCTCCGGGAATGG--A-CAA-AA-TT----------------------------GG--GG-A-A-----GAACGAACGAGGGTAGTG------TGTA-GTGGGGA-TGTTAAACAGCTGTTCATCGGAAGCCTAGCGGATGGAAGTGGACG---------------ACAG-CTCCG--AC---AC-A-CTCC-AGA-C-ATCCT--AAAT-ATATGA-------A------A--TACATCCC----------TAAACACTTTGTCCATTTTGAATACTTTATATACGAGA-TACATATACG------------C---------------T----------TACATCTTATCTA------TTTCCG-TG-C-CACTAACGATGCATAGACGTT-ACA--------TGT--------ACCTC--A------TCTTTCCTCCC-TC--TCCGTTTTTCAGC---TGCA------GCGGAT-GTGAGTT-GCG--AGGATGCCC-----------AGAGGACACAGCGGACG-TTTAACGGATGATAACGGACTTGAAAAGTTTG-----TTG---CT--TGTAT-AT-GTC-GCGGATT-GACATCGTACA-CGGTGGGAAGTCCATCCGTTCTAAAAGTTTTGTGCGGCTTGAAACTT----TTTAC-AC-AAATGAAATCACAGT-GGACGGGGTGC------------TCGATGGATAGAGCGTATGAAATACTTTTGC-AATGAGTACACAATGGATGCATAGC-ATTTTCCAATGGATGGCAAG----------TTT-TTTTTA-----AC--ATTT--TACATCCTCTTTGCATCCgcatgtgcagtgaaaccggg
gi|8 : AATG--------GACAC-AGC--------GGACGAGCAAAA-TGTCGTGGGTGGCTCCATC-----------CGCTCCAGAAATGT--A-CAA-CA-TT----------T-GCG--AA-AACAGAGCAG--AA-A-A-----GTACGGACGAGTGTAGTA------TGTA-GCTGAGA-TGTCAAACGTCTGCTCATCGGAAGCCTAGCGGATGAAGGCGGATG---------------ACAG-CTCCG--AC---AT-ACCTCT-CGA-C-ATACTACAGAC-ATCC-------------------TACATCCTAG-----ATA-AAACACGTTGTCCGTTTTAATTACTTTATATACGAGA-TACATA----------------C---------------C----------C--------TCTT------ATCCTG-TG-C-TACTAACGATGTATAGACGTT-CCATGTAGAACTGT--------ACCTT--A------TCTTTCCTCCC-TCTTTCCGTTTTTCAGC---TGCA------GCGGAT--TGAGTT-GCA--AGGATGCCCAGAGGATGCAGAGAGGATACAGCGGACG-TTTAGCGGATGATAACGGACATGGAACGTTTG------------------AT--------GCGGATT-GGCATCGTACA-CGGCGGAACGTTCATCCGTTCTAAACGTTNNNNNNNNNNNNNNNNNN----NNNNN-NN-NNNNNNNNNNNNNNN-NNNN-NNNNNNNNNNNNNNNNGGTCAAAGGATAGAGCGCATGAAATACGAATGC-AATGAGTATACAGCAGATGCATAGC-GTTTTTAAACGGATGGCAAG--ATTTGATTTTT-TTTTTT-----AC--GTTT--TACAACCTCTTTGCATCCgtaagtgcagtaggaccg
gi|9 : ggcctggtcccactggctCCGGT-CCCACTC-GCCGATGG-ACA-CAAA-ACGTT------TGC------G-AGAAG--------GACACAAGC--------AGACGATCAAAA-TTTC-GGGTTGGCTCCATCCGTTTTCAT-CCGCTCTAGAAATGG-----------------------T-GGG--AA-A----AATGC--AA-ATA-----GAAC-GACGAGGATAGTA------TGTA-GT-GGGA-TGTTTAAAGGCCGTTCATCGGGAGGCTAGTGGATGGAAGTGGGTGA--------------ACAGACTCCG--ACCAAATAA-AAAC-AGA-C-CGCCT--AAAT-ATA-GA-------GGATAATG--TACATCCCAG-----AT-TAAA------GTCCGTCTTGAACACgtaagtgcagtg
gi|9 : cTGAATAC-----ATACGCT--TGCTTC----------------C---------------TG---------T--------CCTA------TTTCCGGTGGC-CACTAAC-ATGTATAGACGTC-CCA--------TGT--------ACCTT--ACATGTATCTTTCCCCCC-TCTTTCCAATTT-CAGCCTGTGCACAGCTAGCGGATAGTGAGGT-GCGTTAA-ATGCCCAGAGGAT-----------ACAGCGGACG-TTGAACGGATGATAAACGACAGAGAACGTTT------------CT--CGTAT--T-GTTAGCGGATTTGACATCGTACAACGGCGGAAAATTCATCCGTTCTAAAAGTGTTGTGC-GTTC-AAACTTTGTGTTTGC-GCGGGATGAAATC----T-GGAC--GATGT------------TCGggggggggtgggggggggggggggggggggggggggtgaatacatacgcttgcttcctgtcctatttccggtggccactaacatgtatagacgtcccatgtaccttacatgtatctttcccccctctttccaatttcagcctgtgcacagctagcggatagtgaggtgcgttaaatgcccagaggatacagcggacgttgaacggatgataaacgacagagaacgtttctcgtattgttagcggatttgacatcgtacaacggcggaaaattcatccgttctaaaagtgttgtgcgttcaaactttgtgtttgcgcgggatgaaatctggacgatgttcg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TCTTGATCATCAAAACGCTTCGACCTCGTTCGTCGATAAAAACAAAATCTGGATGATCTAGACTAG
Unaligned ( gi|25 ): TTGATTATCAAAACGCTTCAACTTATTCATCTGATAAAGACAAACGTCTGGATGATCGAGACTAA
Unaligned ( gi|26 ): TTGATCATTAAAACGCTTTAACTCATTGGCGTTTAATAAAGACAAACGTCTGGATGACCGAGACT
Unaligned ( gi|27 ): ATCTTGATCATCAAGACGCTTCAACTCGTCTGATAAAGACAAACGTCTGGATAATCGAGACTA
Unaligned ( gi|28 ): TTGATCATCAAAACGCTTCGACTCGTTCGCCTGATAAAGACAAACATCTGGATGATCGAGACT
Unaligned ( gi|29 ): TTGATCATCAAAACGCTTCGACTCGTTCTGATAAAGACAAACGTCTGGATGATCCAGACT
Unaligned ( gi|30 ): TCAAGACGCTTCAACTCATCTGATAAAGACAAACGTCTGGATAATCAAGACT
Unaligned ( gi|31 ): GCTTCGATCCGCTCGTCTGATGACAAACGTCTGAATGATCAAGACC
Unaligned ( gi|33 ): TCCTCTCAGCATCCGTAAGTGCAGGAAGACCGGGG