lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 22 1 333 111 11 1 1 44444444444444444444444444444 1 1111 111 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111111 11 77777777 111 11 222222222222 6666 1 22 444444444444444444 11 1111 777777777777777777777777777777 1 111 444444444444444444444444 1111111 333333333 111 111111 1 1 666666666 222222222222222 111 11 333 3333333 44444444444444444444444 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 77 5 6 888 6 000 1 3 1 5 33 1 77 5 5 5 8 5 5 66 5 66 0 0 5 4 55555555555555555555555555555 4 2 0000 4 4 4 222 777777 3 0 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 555 3 3 99 666666 3 3 44 44 00 3 8 3 666 77777777 7 4 9 3 3 3 3 3 9 555 22 333333333333 4 4 7777 99 4 4 4 8 4 2 4 4 4 55 22 1 4 888888888888888888 3 66 66 2 3 3 3 5 3333 55 000000000000000000000000000000 77 4 1 999 2 2 666666666666666666666666 3 3 0000000 33 555555555 0 22 2 2 0 66 2 0 2 2 3 6 333 666666 2 2 4 4 5 5 8 5 5 0 555555555 2 1 4 5 3 3 3 222222222222222 3 000 777 00 9999999 3 3 4 7 666 55 3 3 666 3 3 3 111 4 3 0 777 8888888 7 3 7 55555555555555555555555 666 3 3 3 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2 2 2 2 1 5 2 33 2 2 2 33 6 55 8 4
lowQualScore : .. . . ... . ... . . . . .. . .. . . . . . . .. . .. . . . . ............................. . . .... . . . ... ...... . . . .......................................................................................................... ... . . .. ...... . . .. .. .. . . . ... ........ . . . . . . . . . ... .. ............ . . .... .. . . . . . . . . . .. .. . . .................. . .. .. . . . . . .... .. .............................. .. . . ... . . ........................ . . ....... .. ......... . .. . . . .. . . . . . . ... ...... . . . . . . . . . . ......... . . . . . . . ............... . ... ... .. ....... . . . . ... .. . . ... . . . ... . . . ... ....... . . . ....................... ... . . . ....................................................................................................................................................................................................................................................................................................................................... . . . . . . . .. . . . .. . .. . .
lowQualScore : 55 5 0 555 0 222 4 9 4 7 99 4 99 7 7 7 6 7 0 99 0 99 2 0 0 2 99999999999999999999999999999 4 9 2222 0 0 0 111 222222 1 8 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 888 3 3 22 222222 1 3 66 66 99 3 3 3 222 77777777 7 6 2 1 1 1 3 1 2 777 00 111111111111 0 0 1111 55 0 0 0 0 0 0 0 0 0 55 44 6 0 222222222222222222 3 22 11 1 1 1 1 4 5555 44 999999999999999999999999999999 11 3 4 555 9 9 666666666666666666666666 1 3 3333333 99 999999999 7 99 9 0 1 88 9 7 9 9 1 4 111 000000 7 7 4 4 2 0 4 0 0 9 111111111 0 2 0 1 6 6 6 777777777777777 6 555 666 22 5555555 6 6 4 2 444 00 6 6 444 6 6 6 888 0 4 8 888 7777777 3 6 3 55555555555555555555555 444 6 6 6 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 7 7 7 7 3 7 77 7 7 7 77 2 00 0 4
consensus : TATGACAGGAGTGTGAAACATATGTACGGGAAATAGCATGTAT-AAACATGGCATATTGA-AG-TAGT--ACC-AATAG-CA-CCGTCCCG-TGGTA-TCTT--T-T--GCACT-ACA-GTGAAGC-----A-------TA------T------CTTACTGTT-TTGCATTAN---GAT-A-CACGGTGG-TAC--NTAC--A---T-ATAATACA-TCA-----AGT----N--TA-TT-----------A--------------TGTT---------------A----A------------TN---TT-------T--------TTT---A-T-C--TA------AGCT-T--AT--AC-TACTA-GTTT-TATA--ATGTAC-C---GTATNAACCTTGTAAAA-CT-ATG-TTTGCACATTTGCAA-T-CTT---ATC-AACAT-----------GG-CAT-ATTG----AAGTAGT--ACC-AATAGC-ACCG-T-C-C-G-T-GGTA-TC--TTTT-GCACT-ACAGTGAAGCATA--TAAGC--ATT--TCTT-AC-TGT-TTTGCATTAGGATA-CA-CG-GTGGTACCN---ACAT-AAAATACAT-T------------------CA-AGA-TGGTAT-ATTATGTTAAA-AATGTC--TC-A-TGTTATGTACATCNTTTATCTATAAGCT--N-ATA-C-TACTGG-----TTTT--ATGA--T---T-TACTC-TG-TATNAAC--CTTG-TAAAACT-AT-GTTTGCACA-TTTNCANCCTTTA--N-C-AA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-G---------------GT-ACA-TACAT-ATAATACAT-TCAAG-----T-A-T-ATTATGTTAAAAATGTC--TC--A-T-GTTATG---TTC-TT-TA-TCTATAAG-CTTAG---ATACT--AC-A-TTTTATAATGTA-TAC-TCTG-TATAAT----------------------CC---T-TGT-AA-A-------------------------A----------A---T--------ATG------TC---T-----------------------CATG--TTA------------------T----------------G-----T-----A-----CATT--G-A----TAACCACA-GTACT-TTC-TG---GAT---TTTTATTTT------TTTA-TATTTTTT-TTATTTTTTTTTTNTNNTTTNTATAC-CATATTA-T-ACTATTGT--AAACA-TGTT--GT--AAAACTA-TTG-ACATATTTATTA-----AT--TAT-A----TCAGCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
Reference ( gi|2 ) : TATGACAGA--TGTGAAACATATGCAC-A-AAATAACATGTAT-AAACATGACATGTTGA-AT-TGGT--ACC-AATAG-CA-CCGTCGCG-TGGTA-TCTT--T-T--GCACT-ACA-GTGAAGC-----A-------TA------T------TTTACTGTT-TTGCTTTAT---GAT-A-CACGGTGG-TAC--CTAC--A---T-ATAATACA-TCA-----GGT----T--TA-GT-----------A--------------TGTT---------------A----A------------TT---TT-------T--------TTT---A-T-C--TA------AGCT-T--AT--AC-TACTA-GTAT-TATA--ATG--------GTATGAACCTTGGAAAA-CT-ATG-TTTGCACATTTGCAA-T-CTT---ATC-AACAT-----------TG-CAT-ATTGTTCAAAGTAGT--ACC-AATAGC-ACCG-T-C-C-G-T-GGTA-TC--TTTA-GCACT-ACAGTGAAGTAT---TAAGC--ATT--TCTT-AC-GGT-CTTGCATTAGGATA-CA-CG-GTGATACCA---ACAT-AAAATACAT-C------------------CA-AGACTGGTAT-ATTATGTTAAA-AATATA--TC-A-TGTTATGTACATCATGTATCTATAAGCT--A-ATA-C-TACTAG-----TTTT--ATGA--T---T-TACTC-TG-TATTAAC--CTTG-TAAAACT-AT-GTTTGCACA-TTTGCATCCTTTA--A-T-AA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-G---------------GT-ACA-CACAT-ATAATACAT-TCAAG-----T-A-T-ATTATGTTAAAAATGTC--TC--A-T-GTTATG---TTC-TT-TA-TCTGTTAG-CTTAG---ATACT--ACTAGTTTTATAATGTA-TAC-TCTG-TATAAT----------------------AC---T-TGT-AA-A-------------------------A----------A---C--------ATG------CC---T-----------------------CATG--TTA------------------T----------------G-----T-----A-----CATT--G-A----TAACCACA-GTACC-TTC-TG---GAT---TTTTATTTTCCCCCCTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTA-T-ACTATTG---AAACA-TGTT--GT--AAAACTA-TTG-ACATATTTATCA-GTTTAT--TATCAGCATTCAGCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGA-AAATAGCATGT--------TGAT-TGTTGA-AT-TGGT--ACC-AATAGGCA-CCGTCCCG-TGGTA-TCTT--T-T--GCACTGACA-GTGAAGC-----A-------T-------T------TTT--TGTT-TTGTTGCATATTGATCA-CACGGTGGGTAC--CTAC--AAACT-ATAA-AAA-TCA-----AGT----T---A-TT-----------A--------------TGTT---------------T----T------------TT---TT-------T--------TTTTTTA-T-C--TA------AGCT-T--AT--AC-TACTA-GTAT-TATA--ATGTACTCA--GTATGAACCTTGGAAAAACT-ATG-TT-GCACATTTGCAA-T-CTT---ATC-AACAT-----------GG-CAT-ATTG----AAGTAGTC-ACC-AATAGC-ACCG-T-C-CCG-T-G-TA-TC--TTTTTGCAAT-ACAGTGAAGTAA---TAAGC--ATC--T-TT-AC-TGT-CTTGCATTAGGATA-CA-CGTGTGGTACCA---AC-T-AAAATACAT---------------------A-AGAATGGTAT-ATTATGTTAAAGAATAT---TC-A-TGTTATGTACATTAT--ATCT-TA---T--T-ATA-C-TATTGG-----TTTT----GG--T---T--------G-TATTAAC--CTTGGTAAGACT-AT-GTTTGCACA-TT-ACATCCTTTA--A-T-AA-CA-TGGCA-TATTGA-G-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATT--TTAC-G-TTTTGCA-TATG-TA-CA-CGGTAG---------------GT-ACATTACATAAAAATACAT-TCAAG-----T-A-T-A-TATGTTAAAAATGTC--TC--A-T-GTTATG---TTC-TT-TA-TCTATAAGCCTTAG---ATACT---CGATTTTTATCATGTA-TACTTCTG-TATAAT-----------------------C---T-TGT-AA-A-------------------------ATATGTTTTGCA---CATTTTCCAATG------TT---TATCAA------------------CATGCCTCA------------------T----------------G-----T-----AATGTTAATT--GGA----TAACCACA-GTACT-TTC-TG---GAT---TTTTTTTTT
gi|4 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaTATGACAGA--TGTGAAACATATGTAC-GGAAATAGCATGTAT-AAACATAGCATGTTGA-AT-TGGT--ACC-AATAG-CA-CCGTCCAT-TGGTA-TCTT--T-T--GCACT-GCA-GTGAAGC-----A-------TT------T------TTTATTGTT-TTGCATTAT---GAT-A-CACGGTGG-TAC--CTAC--A---T-ATAATACA-TCA-----AGT----T--AA-TT-----------A--------------TGTT---------------ATT--A------------TT---TT-------T--------TTT---A-T-C--TA------CGCT-T--AT--AC-TACTA-GTAT-CATA--ATGTACTCA--GTATGAACCTTGGAAAA-CT-ATG-TTTGCACATTTGCAA-T-CTT---ATC-AACAT-----------GG-CAT-ATTG----AAGTAGT--ACC-AATAGC-ATCGTT-C-C-G-T-GGTA-TC--TTTT-GCACT-ACAGTGAAGTAT---TAAGT--ATA--TCTT-AC-TGT-CTTGCATTAGGATA-CA-CA-GTGGTACTA---ACAT-AATATACAT--------------------CA-AGACTTTTAT-ATTATGTTAAA-AATATG--TC-A-TG-TATGTACATTATtttttttttttatcgtaaagctgttgtaaaactatgacatattgattaatcagcaatcatgtatgtattatgccaagagagcccctatttggacataaataaatct
gi|3 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaATCTATCAAACATGGCATATTGAGAG-TAGTCAACCGAATAG-CAACCGTCCCGCTGGTA-TCTT--T-TTTGCACT-ACA-GTGAAGT-----AATAAGCTTAC-----T------TTTACTGTCCTTGCATTAG---GAT---CA-GGTGG-TAC--AT-C--A---T-AAAATACA-TCA-----AGA----C--TG-GT-----------A--------------TATTGTTAAAGAATATCTCA----A------------TG---TTATGTACAT--------TAT---A-T-C--TT------A--T-T--AT--ACCTATTG-GTTT-TTTG--GTG---------TATTA-CCTTGTAAGA-CTGATG-TTTGCACATTTAC---T-CTTTA-ATA-ACCAT-----------TGGCATTATTG----AAGTAGT--AC--AAT-GC--CCG-T-TTC-G-T-GGTA-TC--TTTT-GCACT-ACAGTGAAATATATATAA------T--TCTT-ACTGTT-TTTGCATTATGATA-CATCG-GTGGTAACAT--ACAT--AAATACATGT------------------CA-AG--TAATA----TATGTAATA-AATGT---TC-A-TG-TATGT---TCTTTTATCTATAAGCT-----TG-A-TACTAT-----TTTT--ATAA--TGTAT-TACTTGTA-TATT--C--CTTG-TAATAAT-ATCGTTTGCACATTTTTCATGTTTTA--T-C-AC-CA-TGaa
gi|9 : ataataaatcaagtttattaattgttttttttttttttttttatctaagcttatactatacgtattataatgtactcagtatgaacctggaaaactatgttttgcacatttgcaTAT-AA-CATGGCATAT-GA-AG-TA-T--ACC-AATAG-CA-CCGTCCCG-TGGTATTCTT--T-T--GCACTAACA-GTGAAACAATATA-------TA------T------CTTACTGTT-TTACATTAT---GAT-ACCACGGTGT-TAC--ATAC--A---TAAAAATACATTCA-----AGTAGAAT--TATGT-----------AAAAATGTCTTTCATTGTT--------------------A------------TG---TT-------C--------TTT---A-T-C--TAT-----AACTAG--AT--ACATTTTA-A-ATGTATACTCTG--------TTAT-AATCTTGTAAAA-AT--TG-TTTGC-CATTT-CAG-T--TT---ATC-ACCAT-----------cctcatgtactgtacattcgaataaccaagtactttctggatttttttaatatttttttttattttattactactatttgtaaacgcttgttaaactattgacatatttattatcacaatcatgtatgtattatgcccaagagggcctatttggaataaat
gi|7 : tacatccttAACATGGCATATTGA-AG-TAGT--ACC-AATAG-CA-CCGTCCCG-TGGTA-TCTT--T-T--GCATT-ACA-GTGAAAC-----A-------TATATATTT------CTTACTGTT-TTACCTTAG---GAT-A-TACGGTAT-TAC--ATAC--A---T-ATAATACATTCA-----AGT----A--TA-TT-----------A--------------TGTT---------------A----AAAATGTCTCATGTTATGTT-------C--------TTT---A-T-CTATA------AGCT-TAGAT--AC-TACTA-GTTT-TATA--ATGTATACTCTGTATAACTCTCGTAAAA-AT-ATG-TTGGCACATTTGCAA-TGTTT---ATC-AACAT-----------gccctcagtagtacattgacatgtaaacacgtgttatttctggtttttatttatttattttttttttttagttttattactcatattgtaaacatgtgctaaacttagttgatatttaattatcaagcaatatgtatgttattatgccagagggccccatgttactgatgataaataaattatcttatc
gi|5 : actagttttatgatttactctgtattaacctcgtaaaactatgtttgcacatttgcatcctttaatAACATGGCATATTGA-AGATAGT--ACC-AATAG-CA-CCGTCCCG-TGGTA-TCTT--T-T--GCA-T-ACA-GTGAAAC-----A-------TA------TATAATTCTTACTGTT-TTGCATTAT---GAT-A-CACGGTGG-TAC--ATAC--A---T-A-AATACATTCA-----AGT----A--TA-TT-----------A--------------TGTA---------------A----AAATGTCTCATG-TTATGTT-------C--------TTT---A-T-CTATA------AGC--T--AG--A--TACTA-TTTT-TATA--ATGTATACTCTGTATAATCCTTGTAAAA-AT-ATG-TTTGCACATTTTCAA-TGTTT---ATCAAACAT-----------gcctcatgttatgtacattgataactacagtgccttctggattttttccctttatcattatcattatcattactatattgtaaacatgttgtaaaactattgacacatttttattatcagcaatcatgtatgtattatgcccaggagggcccctatttggaataaataattctatatatctacctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
gi|6 : taccaacataaaatacatcaagactggtatattacatcaagactggtatattatgttaaagaatatctcatgttatgtacattatatcttatttactattggttttgtgtattaaccttgtaagactatgtttgcacatttacatcctttaatAACATGGCATATTGA-AG-TAGT--ACC-AATAG-CA-CCGTC-CG-TGGTA-TCTT--T-T--GCACT-ACA-GTGAAAC-----A-------TA------TATAATTCTTACTGTT-TTGCATTAT---GAT-A-CACGGTGG-TAC--ATAC--------ATAATACATTCA-----AGTAA--TA-TATGTAAAAATGTCTCA--------------TGTT---------------A----T------------GT---TC-------T--------TAT---ACT-A--TA------AGCT-T--AG--A--TACTA-TTTT-TATA--ATGTATACTCTGTATAATCCTTGTAAAA-AT-ATG-TTTGCACATTTTCAA-TGTTT---ATC-AACAT-----------gcctcatgtaatgtacattgataaccacagtactttctggatttttattttttttttattgtaaacatgttgtaaaactattgacatatttattatcagcaatcatgtatgtattatgccaaagagggcccctatttggaaaaaataaatctatctatctatatattt
gi|13 : ataccaacataaaatacatcaagactggtatattacatcaagactggtatattatgttaaagaatatctcatgttatgtacattatatcttattatactattggttttgtgtattaaccttgtaagactatgtttgcacatttacatcctttaaatGTA-TTTTAGTGT--GCATT-ATGTGTGCA-T-----A-------TA------T------CTGACTGTT-TTGCATTAG---GAT-A-CACGATTA-TAC--TTGA--A---T-TTGATACA-gcctcatgtaatgtacattgataaccacagtactttctggatttttatttttttttttttgtaaacatgttgtaaaactattgacatatttattatcagcaatcatgtatgtattatgccaagagggcccctatttgaataaataaatctatctatctata
gi|19 : ------T------CTTACTGTT-TTGCATTAG---GAT-A-CACGGTGG-TACATGTAC--A---T-AAAGTACA-Tgaagtattatcatgctccaaatgtctcatgttatgttccttgtttaaacacagtacattctggacgatttttgttaagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|11 : ttTTAA---GAT-A-CACGGTGG-TAC--CTACCTA---T-ATAAT--A-TTA-----TGT----TAAAA-AT-----------A--------------TGTC---------------ATGTTA------------TA---TT-------C--------ATT---G-T-C--TA------AGCT-T--AT--Aacatatgatacattcaaatatattat
gi|5 : a---T-ATATTACA-TCAAGACTGGT----A--TA-TT-----------A--------------TGTT---------------A----AAGAATA------TC---TCA------T--------GTT---A-T-G--TACATTATATCT-T--ATTTAC-TATTG-GTTT-TGT--------------GTATTAACCTTGTAAGA-CT-ATG-TTTGCACATTTACAT-C-CTTTA-AT--AACAT-----------GG-CAT-ATTG---AAGATAGT--ACC-AATAGC-ACCG-T-C-CCG-T-GGTA-TC--TTTT-GCA-T-ACAGTGAAACATATATAA------T--TCTT-AC-TGT-TTTGCATTATGATA-CA-CG-GTGGTACAT---ACAT--AAATACAT-T------------------CA-A-----GTAT-ATTATG-TAAA-AATGTC--TC-A-TGTTATGT---TC-TTTATCTATAAGCT--AGATA-C-TAT--------TTTT--ATAA--TG--TATACTC-TG-TATAATC--CTTG-TAAAAAT-AT-GTTTGCACA-TTTTCAATGTTTATCA---AA-CA-TGnnnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|6 : taccaacataaaatacatcaagactgg---T-ATATTACA-TCAAGACTGGT----A--TA-TT-----------A--------------TGTT---------------A----AAGAATATCTCA-TG---TTATGTACAT--------TAT---A-T-C--TT------A--T-T--AT--AC-TATTG-GTTT-TGT--------------GTATTAACCTTGTAAGA-CT-ATG-TTTGCACATTTACAT-C-CTTTAAAT--AACAT-----------GG-CAT-ATTG----AAGTAGT--ACC-AATAGC-ACCG-T-C-C-G-T-GGTA-TC--TTTT-GCACT-ACAGTGAAACATATATAA------T--TCTT-AC-TGT-TTTGCATTATGATA-CA-CG-GTGGTACAT---ACAT---AATACAT-T------------------CA-AG--TAATA----TATG-TAAA-AATGTC--TC-A-TGTTATGT---TCTTATA-CTATAAGCT--T-AGA---TACTAT-----TTTT--ATAA--TG--TATACTC-TG-TATAATC--CTTG-TAAAAAT-AT-GTTTGCACA-TTTTCAATGTTTA--T-C-AA-CA-TGcctcatgtaatgtacattgataaccacagtactttctggatttttattttttttttattgtaaacatgttgtaaaactattgacatatttattatcagcaatcatgtatgtattatgccaaagagggcccctatttggaaaaaataaatctatctatctatatattt
gi|3 : ataccaacataaaatacatcaagactgg-ATAATAAA-TCA-----AGT----T--TA-TT-----------AAT------------TGTT---------------------------------TT---TT-------TTTTTTTTTTTT---A-T-C--TA------AGCT-T--AT--AC-TA-TACGTAT-TATA--ATGTACTCA--GTATGAACC-TGGAAAA-CT-ATGTTTTGCACATTTGCAA-T-C-T---ATCAAACAT-----------GG-CAT-ATTG---AGAGTAGTCAACCGAATAGCAACCG-TCC-C-GCT-GGTA-TCTTTTTT-GCACT-ACAGTGAAGTAA---TAAGC---TTACTTTT-AC-TGTCCTTGCATTAGGAT--CA--G-GTGGTA-CA---TCAT-AAAATACAT--------------------CA-AGACTGGTAT-AT--TGTTAAAGAATATC--TCAA-TGTTATGTACAT--TATATCT-TA---T--T-ATACC-TATTGG-----TTTT--TTGG--------------TG-TATT-AC--CTTG-TAAGACTGAT-GTTTGCACA-TTTAC--TCTTTA--A-T-AACCATTGGCATTATTGAAG-TAGTA-CAATGCC--CGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA------ATATATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-G---------------GTAACA-TACAT-A-AATACATGTCAAG-----TAA-T-A-TATGTAATAAATGT---TC--A-T-G-TATG---TTCTTT-TA-TCTATAAG-CTT-G---ATACT--AT---TTTTATAATGTATTAC-T-TG-TATATT----------------------CC---T-TGT-AATA-------------------------ATATCGTTTGCA---C--------ATT------TT---T-----------------------CATGTTTTATCACCATGCCTCATGTACT----------------G-----T-----A-----CATTCGA-A----TAACCA-A-GTACT-TTC-TG---GAT---TTT------------TTTAATATTTTTTTTTATTTTATTACTACTATTTGTAAACGCTTGTTA-A-ACTATTG---A----------------------------CATATTT---------AT--TATCA--------CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGG--CC-TATT--T-GG-A-AT--AAATcctcatgtaatgtacattgataaccacagtactttctggatttttatttttttttttttgtaaacatgttgtaaaactattgacatatttattatcagcaatcatgtatgtattatgccaagagggcccctatttgaataaataaatctatctatctata
gi|10 : GTT---------------A----G------------TC---TT-------TC-------TTT---A-TTC--TAT-----AACT-T--AG--A--TACTA-TTTT-TATA--ATTATATCT--GTATAATCCTTGTAAA---T-AT--TTTGGAC-TTTCCAAAT-TTT---ATC-AACAT-----------
gi|7 : gttcatatgtgaaatattttataaagataataataaaaaatgtcttcaatgACTA-GTTT-TATG--ATTTACTCT--GTATTAACCTCGTAAAA-CT-ATG-TTTGCACATTTGCAT-C-CTTTA-AT--AACAT-----------GG-CAT-ATTG----AAGTAGT--ACC-AATAGC-ACCG-T-C-CCG-T-GGTA-TC--TTTT-GCATT-ACAGTGAAACATA--TA--T--ATT--TCTT-AC-TGT-TTTACCTTAGGATA-TA-CG-GTATTACAT---ACAT-ATAATACAT-T------------------CA-AG-----TAT-ATTATGTTAAA-AATGTC--TC-A-TGTTATGT---TC-TTTATCTATAAGCTTAG-ATA-C-TACTAG-----TTTT--ATAA--TG--TATACTC-TG-TA-TAACT-CTCG-TAAAAAT-AT-GTTGGCACA-TTTGCAATGTTTA--T-C-AA-CA-TGgctcatgtaatgacattgactacacagtactattcatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattactactattgtaaaagcatgttgtaaaactattgacatatttattatcagcaatcatgtatattatggcacaagaggcccctgtttggaataaataaat
gi|12 : TG--------GTATAATCCTTGTGAAA-CT-ATG-TTTGCACATTTGCAA-A-TTT---ATC-AACATGCCTCATGTTATG-TAC-ATTGTTAAAAACAGT--ACC-cctcatgttatgtacattgataactacagtgccttctggattttttccctttatcattatcattatcattactatattgtaaacatgttgtaaaactattgacacatttttattatcagcaatcatgtatgtattatgcccaggagggcccctatttggaataaataattctatatatctacctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
gi|9 : ttttatagtgtactcTT---AT--AACAT-----------GG-CAT-AT-----GAAGTA-T--ACC-AATAGC-ACCG-TCC-C-G-T-GGTATTC--TTTT-GCACTAACAGTGAAACAA---TA--T--ATA--TCTT-AC-TGT-TTTACATTATGATACCA-CG-GTGTTACAT---ACATAAAAATACAT-T------------------CA-AG--TAG-A--ATTATG-TAAA-AATGTCTTTC-ATTGTTATGT---TC-TTTATCTATAA-CT--AGATA-C------A-----TTTTAAATG---T---A-TACTC-TG-TTATAAT--CTTG-TAAAAAT--T-GTTTGC-CA-TTT-CA--GTTTA--T-C-AC-CA-TGCCC-T----CAG-TAGTACttctgattttttttttttattattttttattattattattatcatcattattattactactattgtaaacatgttgtaaaactattgacatattttttttattatcagcaatcatgtatgtattatgccgaagagg
gi|4 : tacatcctT---ATA-AACAT-----------AG-CAT-GTTG----AATTGGT--ACC-AATAGC-ACCG-T-C-C-A-TTGGTA-TC--TTTT-GCACT-GCAGTGAAG----------C--ATT--TTTT-AT-TGT-TTTGCATTATGATA-CA-CG-GTGGTACCT---ACAT-ATAATACAT-C-------------------A-AG---------------TTAA----------TT-A-TGTTAT-TATTTTTTTTATCTAC--GCT--T-ATA-C-TACTAG-----TATC--ATAA--T---G-TACTC-AG-TATGAAC--CTTG-GAAAACT-AT-GTTTGCACA-TTTGCAATCTT----A-TCAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCATCGTTCCGTGGTA-TCTTTTGCACT-ACAGTGAAGTAT-TAAGTATA----TCTTACTG-TCTTGCATTAGGATA-CA-CAGT-G---------------GT-ACT-AACAT-AATATACA--TCAAGACTTTT-A-T-ATTATGTTAAAAATATG--TC--A-T-G-TATG---TAC-AT-TA-Tattgacatgtaaacacgtgttatttctggtttttatttatttattttttttttttagttttattactcatattgtaaacatgtgctaaacttagttgatatttaattatcaagcaatatgtatgttattatgccagagggccccatgttactgatgataaataaattatcttatc
gi|1 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccatatgacagatgtgaaacatatgtacggaaatagcatgTGGT-ACCA-C-A-C-G-T-G-TA-TC--CTAATGCAAG-ACAGTAAAG-AT------GCTTATT--ACTTCAC-TGT-ATTGCAAAAAGATA-CA-CG-Gaa
gi|13 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccatatgacaggagtgtgaacatatgtacgaaaatagcatgttgattgttgaattggtaccaataggcaccgtcccgtggtatcttttgcactgacagtgaagcattttttgttttgttgcatattgatcacacggtgggtacctacaaactataaaaatcaagttattatgtttttttttttttttatctaagcttatactactagtattataatgtactcagtatgaaccttggaaaaactatgttgcacatttgcaatcttatcaacatggcatattgaagtagtcaccaatagcaccgtc--ATA--TCTG-AC-TGT-TTTGCATTAGGATA-CA-CG-ATTATACT-------T-GAATTTGAT-A------------------CA-GAA---GTATTATCATGCTCCA-AATGTC--TC-A-TGTTATGT---TCCT-TGTTTA-AACAC--A-GTA-CATTCTGGACGATTTTT--GTTAAGTA--T-TACTA-T--TATAAACATGTTG-TAAAACT-AT-actaaaatacataagaatggtatattatgttaaagaatattcatgttatgtacattatatcttattatactattggttttggttgtattaaccttggtaagactatgtttgcacattacatcctttaataacatggcatattgagtagtaccaatagcaccgtcccgtggtatcttttgcactacagtgaaacatatataaattttacgttttgcatatgtacacggtaggtacattacataaaaatacattcaagtatatatgttaaaaatgtctcatgttatgttctttatctataagccttagatactcgatttttatcatgtatacttctgtataatcttgtaaaatatgttttgcacattttccaatgtttatcaacatgcctcatgtaatgttaattggataaccacagtactttctggatttttttttttttttttttttatcgtaaagctgttgtaaaactatgacatattgattaatcagcaatcatgtatgtattatgccaagagagcccctatttggacataaataaatct
gi|19 : gtattttagtgtgcattatgtgtgcatTT--TCTT-AC-TGT-TTTGCATTAGGATA-CA-CG-GTGGTA-CATGTACAT-AAAGTACAT-A------------------CATA---TGATAC-ATT------CA-AATATA--TT-A-Tcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|11 : ATTAAGATA-CA-CG-GTGGTACCT---ACCT-A---TATA--------------------------------AT-ATTATGTTAAA-AATATG--TC-A-TGTTATAT---TCAT-TGTC--TAAGCT--T-ATA-
gi|6 : ATACCA---ACAT-AAAATACAT-CAAGACTGGTATATTACATCA-AGACTGGTAT-ATTATGTTAAAGAATATC--TC-A-TGTTATGTACATTAT--ATCT-TA---T--T-ATA-C-TATTGG-----TTTT--GTG------------------TATTAAC--CTTG-TAAGACT-AT-GTTTGCACA-TTTACATCCTTTA--AAT-AA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCC-GTGGTA-TCTTTTGCACT-ACAGTGAAACATA------TATAATTCTTACTG-TTTTGCATTATGATA-CA-CGGT-G---------------GT-ACA-TAC---ATAATACAT-TCAAG-----TAA-T-A-TATG-TAAAAATGTC--TC--A-T-GTTATG---TTC-TTATA--CTATAAG-CTTAG---ATACT--AT---TTTTATAATGTA-TAC-TCTG-TATAAT----------------------CC---T-TGT-AA-A-------------------------A----------A---T--------ATG------TT---TGCACATTTTCAATGTTTATCAA-CATGCCTCA------------------TGTAAT-----------G-----T-----A-----CATT--G-A----TAACCACA-GTACT-TTC-TG---GAT---TTTTATTTTnnnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|5 : TACCA---ACAT-AAAATACAT-CAAGACTGGTATATTACATCA-AGACTGGTAT-ATTATGTTAAAGAATATC--TC-A-TGTTATGTACATTAT--ATCT-TA--TT-----TA-C-TATTGG-----TTTT--GTG------------------TATTAAC--CTTG-TAAGACT-AT-GTTTGCACA-TTTACATCCTTTA--A-T-AA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACA------TATATAATTCTTACTG-TTTTGCATTATGATA-CA-CGGT-G---------------GT-ACA-TACAT-A-AATACAT-TCAAG-----T-A-T-ATTATG-TAAAAATGTC--TC--A-T-GTTATG---TTC-TT-TA-TCTATAAG-C-TAG---ATACT--AT---TTTTATAATGTA-TAC-TCTG-TATAAT----------------------CC---T-TGT-AA-A-------------------------A----------A---T--------ATG------TT---TGCACATTTTCAATGTTTATCAAACATGCCTCA------------------T----------------GTAATGT-----A-----CATT--G-A----TAACCACA-GTACT-TTC-TG---GAT---TTTTATTTTtttttttttgtaaacatgttgtaaaactattgacatatttattatcagcaatcatgtatgtattatgccaagagggcccctatttgaataaataaatctatctatctata
gi|10 : TCTATAACTT--AGATA-C-TATT--------TTT--ATAA--T---TATA-TC-TG-TATAATC--CTTG-TAAA--T-AT--TTTGGAC--TTTCCAAATTTTA--T-C-AA-CA-TGttttttattgtaaacatgttgtaaaactattgacatatttattatcagcaatcatgtatgtattatgccaaagagggcccctatttggaaaaaataaatctatctatctatatattt
gi|7 : gttcatatgtgaaatattttataaagataataataaaaaatgtcttcaatggttagtctttctttatACTAG-----TTTT--ATGA--T---T-TACTC-TG-TATTAAC--CTCG-TAAAACT-AT-GTTTGCACA-TTTGCATCCTTTA--A-T-AA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAACATA------TATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-A---------------TT-ACA-TACAT-ATAATACAT-TCAAG-----T-A-T-ATTATGTTAAAAATGTC--TC--A-T-GTTATG---TTC-TT-TA-TCTATAAG-CTTAG---ATACT--ACTAGTTTTATAATGTA-TAC-TCTG-TATAAC----------------------TC---T-CGT-AA-A-------------------------A----------A---T--------ATGTTGGCACA---TTTGCAATGTTTATCAA-------CATGCCTCA------------------T----------------G-----TTATGTA-----CATT--G-A----TAACTACA-GTGCC-TTC-TG---GAT---TTTT-------TCCCTTTA------------------TCATTATCATTATCATTACTATATTG-T-----------AAACA-TGTT--GT--AAAACTA-TTG-ACACATT-------TTTAT--TA-------TCAGCAATCATG-T-ATG-TATTAT-GCCCAGGA-GGGCCCC-TATT--T-GG-A-AT--AAATAATTC-T--ATA-T-ATCTActcatgtaatgacattgactacacagtactattcatggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattactactattgtaaaagcatgttgtaaaactattgacatatttattatcagcaatcatgtatattatggcacaagaggcccctgtttggaataaataaat
gi|12 : -----TTTT--ATAG--T---G-TACTC-TGGTATAATC--CTTG-TGAAACT-AT-GTTTGCACA-TTTGCA-AATTTA--T-C-AA-CA-TGcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
gi|9 : TACATCCTTTA----T-AA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-------ATATATATCTTACTG-TTTTACATTATGATACCA-CGGT-G---------------TT-ACA-TACATAAAAATACAT-TCAAG-----T-A-GAATTATG-TAAAAATGTCTTTC--ATT-GTTATG---TTC-TT-TA-TCTA-TAA-C-TAG---ATAC-------ATTTTA-AATGTA-TAC-TCTGTTATAAT-----------------------C---T-TGT-AA-A-------------------------A----------ATTGT--------TTG------CCATTT-----------------------CAGT--TTA------------------TCACCATGCCCTCAGTAG-----T-----A-----CATT--G-ACATGTAAACACGTGTTAT-TTC-TG---G-T---TTTTATTT------ATTTA-------------TTTTTTTTTTTTAGTTTTATTACTCATATTG-T-----------AAACA-TGTG--CT--AAACTTAGTTG---ATATTTA--------AT--TATCA------AGCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GGGCCCCATGTTACT-GATG-AT--AAATAAAT--T--ATCTT-ATCcctcatgttatgtacattgttaaaaacagtaccttctgattttttttttttattattttttattattattattatcatcattattattactactattgtaaacatgttgtaaaactattgacatattttttttattatcagcaatcatgtatgtattatgccgaagagg
gi|4 : -AA-CA-TAGCA-TGTTGAAT-TGGTACCAATAGCACCGTCCATTGGTA-TCTTTTGCACT-GCAGTGAAGC------------ATTTTTTATTG-TTTTGCATTATGATA-CA-CGGT-G---------------GT-ACC-TACAT-ATAATACA--TCAAG-----T-T-A-ATTATGTTA-------------------TTATT---TTT-TT-TA-TCTAC--G-CTT-----ATACT--ACTAGTATCATAATG---TAC-TCAG-TATGAA----------------------CC---T-TGG-AA-A-------------------------A---------------------------------C---T------------------------ATG--TT-------------------T----------------G-----C-----A-----CATT--
gi|13 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccatatgacagatgtgaaacatatgtacggaaatagcatgtataTATGTGTGCATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-T---------------AT-ACT-TGAAT-TTGATACA---GAAG-----T-ATT-ATCATGCTCCAAATGTC--TC--A-T-GTTATG---TTC-CT-TG-TTTA--AA-CACAGTACATTCTGGACGATTTTTGTTAAGTATTAC-TAT--TATAA-----------------------ACATGT-TGT-AA-A-------------------------A----------C---T--------A-------------T-----------------------CA-----TA------------------T----------------G-----T-----AT----CATC--A-A----CAATCtgcaatcttatcaacatggcatattgaagtagtaccaatagcatcgttccgtggtatcttttgcactacagtgaagtattaagtatatcttactgtcttgcattaggatacacagtggtactaacataatatacatcaagacttttatattatgttaaaaatatgtcatgtatgtacattataa
gi|19 : gtattttagtgtgcatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGTACATGTACATAAAGT-ACA-TACAT-ATGATACAT-TCAAA-----T-A-T-ATTATgtgtaatgtactgtgcccaag
gi|11 : ATTAAGATA-CA-CGGT-G---------------GT-ACC-TACCT-ATA-TA----------------A-T-ATTATGTTAAAAATATG--TC--A-T-GTTATA---TTC-AT-TG-TCTA--AG-CTTA
gi|10 : AAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TT-TATTCTA-TAA-CTTAG---ATACT--AT---TTTTATAAT-TA-TA--TCTG-TATAAT----------------------CC---T-TGT-AA-ATATTTTGGACTTTCCAAATTTTATCA----------A---C--------ATG-------C---T-----------------------CATG--TAA------------------T----------------G-----------A-----CATT--G-AC---TA--CACA-GTACTATTCATG---GNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTACTAC------------TATTG-T-A-----A---AAGCA-TGTT--GT--AAAACTA-TTG-ACATATTTATTA------------------TCAGCAATCATG-T-A---TATTATGGCACAAGA--GGCCCC-TGTT--T-GG-A-AT--AAATAAATtannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|12 : gttcatatgtgaaatattttataaagataataataTTTTATAGTGTA---C-TCTGGTATAATCCTTGTGAAACTATGTTTGCACAT---T-TGC-AA-ATTTATC-------------------A----------A---C--------ATG------CC---T-----------------------CATG--TTA------------------T----------------G-----T-----A-----CATT--G-T----TAAAAACA-GTACC-TTC-TG----AT---TTTT-TTTT------TTTATTATTTTTTATTATTATTATTATCATCATTAT-------TATTACT-ACTATTGT--AAACA-TGTT--GT--AAAACTA-TTG-ACATATTTTT----TTTAT--TATCAG-------CAATCATG-T-ATG-TATTAT-GCCGAAGA-GG
gi|11 : -TAC--CTA-TATAAT----------------------AT---TATGTTAA-A-------------------------A----------A---T--------ATG-----------T-----------------------CATG--TTA------------------T----------------A-----T-----T-----CATT--G-
gi|13 : attaagatacacggtggtacc--------ATG------TC---T-----------------------CATG--TTA------------------T----------------G-----T-----T-----CCTT--GTT----TAAACACA-GTACA-TTC-TGGACGAT---TTTTGTTtctaagcttatannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaa--------ATG------TC---T-----------------------CATG--TTA------------------T----------------G-----T-----G-----CATT--aagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|15 : ctacatgctgcatttgatgatgcagaagtatcatcatgctccaaTG------CC---T-----------------------C-----TCA------------------T----------------A-----G-----A-----CATT--G----------CACA-ATACC-TTC-TG---GATTTCTTTTATTctggattttttaaaaattattattactattataaacatgttttgtaaactatcataattatatggtatgatcatgcaatcacatgtgccatgcccaagaggggcccctatttggatacacaaatca
gi|16 : ATAGTA-TTACTATTG---TACCA-TGTT--GTAAAAAACTA-TTGAACATTTTTA-----TTTAT--TA--AACTATCAGC-ATCATGAT-ATG-TATTAT-G-CCAAGACGCACCTA-TATT--TAAG-G-ATGAAAAT-AATC-T--ATC-TCATCTATactattactgtataaacagtgttgtaaaactgtcctatgtattatcagcaatcatgtatgttctattcaagaggatccttatttggaataaataaatcatatc
gi|15 : attaTATTACT-ATTACTGTATAAACAGTGTT--GT--AAAACTG-T----CCTATGTATTA------------------TCAGCAATCATG-T-ATG-TTCTAT---TCAAGA-GGATCCT-TATT--T-GG-A-AT--AAATAAATCAT--ATC-cta
gi|14 : tgcctctcatagacattgcacaataccttctggatttctttTATTA-TTACTATTAT--AAACA-TGTTTTGT--AAA-CTA-T----CATAATTAT-------ATGGTATGATCAT---GCAATCAC----ATG-TGCCAT-GCCCAAGAGGGGCCCC-TATT--T-GG---AT--ACACAAATC-
gi|17 : ctacatgctgcatttgatgatgcagaagtatcatcatgctccaaatgtctcatgttatgtgcattctggattttttaaaaatTATTAGT-ATTAATAT--AGACA-TGTT--GT--AAAAATA-T----CATATa
gi|13 : cgggtttttggtgat-T-ACTATTAT--AAACA-TGTT--GT--AAAACTA-T----CATATGTATCA------------------TCAACAATCGTG-TAATG-TACTGT-GCCCAAGgtgtgcattatgctcaagaggaccactgtttggaataaataaatcatatcatatcatgtact
gi|1 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaatgtctcatgttatgttccttgtttaaacacagtacattctggacgatttttgttaagtatTATCGT--AAAGC-TGTT--GT--AAAACTA--TG-ACATATTGATTA-A----------------TCAGCAATCATG-T-ATG-TATTAT-G-CCAAGA-GAGCCCC-TATT--T-GG-ACAT--AAATAAATC-T--
gi|5 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccatatgacaggagtgtgaacatatgtacgaaaatagcatgttgattgttgaattggtaccaataggcaccgtcccgtggtatcttttgcactgacagtgaagcattttttgttttgttgcatattgatcacacggtgggtacctacaaactataaaaatcaagttattatgtttttttttttttttatctaagcttatactactagtattataatgtactcagtatgaaccttggaaaaactatgttgcacatttgcaatcttatcaacatggcatattgaagtagtcaccaatagcaccgtcccgtgtatctttttgcaatacagtgaagtaataagcatctttactgtcttgcattaggatacacgtgtggtaccaactaaaatacataagaatggtatattatgttaaagaatattcatgttatgtacattatatcttattatactattggttttggttgtattaaccttggtaagactatgtttgcacattacatcctttaataacatggcatattgagtagtaccaatagcaccgtcccgtggtatcttttgcactacagtgaaacatatataaattttacgttttgcatatgtacacggtaggtacattacataaaaatacattcaagtatatatgttaaaaatgtctcatgttatgttctttatctataagccttagatactcgatttttatcatgtatacttctgtataatcttgtaaaatatgttttgcacattttccaatgtttatcaacatgcctcatgtaatgttaattggataaccacagtactttctggattttttttttttttttttttTATTGT--AAACA-TGTT--GT--AAAACTA-TTG-ACATATTTATTA------------------TCAGCAATCATG-T-ATG-TATTAT-GCCAAAGA-GGGCCCC-TATT--T-GG-A-AA--AAATAAATC-T--ATC-T-ATCTAT
gi|6 : taccaacataaaatacatcaagactggtatattacatcaagactggtatattatgttaaagaatatctcatgttatgtacattatatcttatttactattggttttgtgtattaaccttgtaagactatgtttgcacatttacatcctttaataacatggcatattgaagatagtaccaatagcaccgtcccgtggtatcttttgcatacagtgaaacatatataattcttactgttttgcattatgatacacggtggtacatacataaatacattcaagtatattatgtaaaaatgtctcatgttatgttctttatctataagctagatactatttttataatgtatactctgtataatccttgtaaaaatatgtttgcacattttcaatgtttatcaaacatgcctcatgtaatgtacattgataaccacagtactttctggatttttatttttttttTTGT--AAACA-TGTT--GT--AAAACTA-TTG-ACATATTTATTA------------------TCAGCAATCATG-T-ATG-TATTAT-G-CCAAGA-GGGCCCC-TATT--T--G-A-AT--AAATAAATC-T--ATC-T-ATCTATatattt
gi|18 : ataccaacataaaatacatcaagactggtatattacatcaagactggtatattatgttaaagaatatctcatgttatgtacattatatcttattatactattggttttgtgtattaaccttgtaagactatgtttgcacatttacatcctttaaataacatggcatattgaagtagtaccaatagcaccgtccgtggtatcttttgcactacagtgaaacatatataattcttactgttttgcattatgatacacggtggtacatacataatacattcaagtaatatatgtaaaaatgtctcatgttatgttcttatactataagcttagatactatttttataatgtatactctgtataatccttgtaaaaatatgtttgcacattttcaatgtttatcaacatgcctcatgtaatgtacattgataaccacagtactttctggatttttatttttttttttTT--GC--AAGTTTA-TTC-GTACATTTGACATATTTAT--TATCAG-------CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-a
gi|20 : ttcaTCAGCAACCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TA-T--T-GG-A-AT--AAATAAATC-
gi|17 : catatatatattaATG-T-GTG-CATTAT-GCTCAAGA-GGACCAC-TGTT--T-GG-A-AT--AAATAAATCAT--ATCAT-ATCata
gi|21 : cgggtttttggtgattattagtattaatatagacatgttgtaaaaatatcatGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-TAAATC-T-ATatgtact
gi|23 : -TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTGTac
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT
Alignments
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 333 44 1 1 1 1 1 222 1 11 333333333333 111 1 1 444 1 1 1 1 222222 22 1 1 111 1 1 11 1 33 111 11 1 999999999999999999999999999 11111 2 666666666666666666 666666666 111 1111 222222222222222 111 33333 1111111111 111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6666666666666666666666
lowQualScore : 111 7 33 7 0 7 6 5 6 3 3 8 6 0 1 3 3 1 333 3 2 0 33 222222222222 1 777 2 0 7 3 999 1 3 5 0 0 3 3 0 222222 33 0 0 111 0 0 2 33 0 6 11 3 555 6 66 3 2 0 1 000000000000000000000000000 44444 5 0 2 3 4 5 111111111111111111 44 6 8 444444444 1 6 1 6 1 3 777 5 5 5 5 5 1 5 1 2222 6 4 4 1 4 4 4 4 555555555555555 4 4 6 4 4 111 8 9 55 55 4 4 777 4 8 777 4 55 11111 3 7 5555555555 3 7 111111 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 33 2 33 33 2 9999 7777777777777777777777 2 2 2 2 2 2 0 5 2 33 2 2 2 33 5 44 7 4
lowQualScore : ... . .. . . . . . . . . . . . . . . . ... . . . .. ............ . ... . . . . ... . . . . . . . . ...... .. . . ... . . . .. . . .. . ... . .. . . . . ........................... ..... . . . . . . .................. .. . . ......... . . . . . . ... . . . . . . . . .... . . . . . . . . ............... . . . . . ... . . .. .. . . ... . . ... . .. ..... . . .......... . . ...... ......................................................................................................................................................................................................................................................................................... .. . .. .. . .... ...................... . . . . . . . . . .. . . . .. . .. . .
lowQualScore : 000 3 77 3 7 3 0 0 0 3 3 3 0 7 0 3 3 0 333 2 5 8 88 555555555555 0 555 5 0 0 2 555 0 2 0 0 0 2 2 0 222222 88 0 0 000 0 0 5 88 0 0 00 2 000 5 00 2 5 0 0 444444444444444444444444444 33333 7 1 9 7 3 7 555555555555555555 55 7 5 000000000 0 7 0 7 0 0 666 7 7 7 7 7 7 7 4 1111 5 8 4 0 0 0 0 0 000000000000000 0 0 0 0 0 222 0 0 55 55 0 0 000 0 0 000 0 55 11111 6 3 9999999999 6 3 111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 99 9 99 99 7 8888 0000000000000000000000 5 5 5 5 5 5 9 0 5 44 5 5 5 44 7 66 3 0
consensus : TATGACAGA--TGTGAAACATATGTACGG-AAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTACA---TATAATANATCAAGTTTATTA--TG------TTN--NTTTTTTTT---ATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAA-CTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCG-T-CC-G-TGGTATC--TTTT-GCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAAATACAT------------------TCAA-GACTG-----GTAT-ATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT----TATCT-TA---TTATA-CTACTGGTTTTGTGGTT-----TGTATTAACCTTG-TAAGACT-ATGTTTGCACATTTACATCCTTTAA-TAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CAT-ACAT-ATAA-TACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGC-TTAGATACT--AC--G--TTTT-ATAATGTA-TAC----------TCT-G-TATAAT---C--CTT----------------------GTA--------AA-------------------------A-----ATAT-G----------T---CT-----------------------C-------AT----G--TT-------AT------------------G------------TACATT--G-A----TAACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTA-----T-TTTTTTATT-TTTTTTTTNTNNTTT-T-TA--ATATTA-T---AC-TATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CATATTTATT-----AT--TA---T-A----TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
Reference ( family-1967 ) : TATGACAGGAGTGTGAAACATATGTACGGGAAATAGCATGTATAAACATGGCATATTGAAGTAGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATATCTTACTGTTTTGCATTANGAT-ACACGGTGG-TACNTACA---TATAATACATCAAGTNTATTA--TG------TTA--ATNTTTTTT---ATCTAAGCTTATACTACTA-GTTTTATAATGTACC--GTATNAACCTTGTAAAA-CTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ACCG-T-CC-G-TGGTATC--TTTT-GCACTACAGTGAAGCATATAAGCATT--TCTTACTGT-TTTGCATTAGGATACACG-GTGGTACCNACATAAAATACAT------------------TCAA-GA-TG-----GTAT-ATTATGTTAAA-AATGTCTC-ATGTTATGTACATCNT---TTATCTATAAGCTNATA-CTACTGGTTTTATGATTTACTCTGTATNAACCTTG-TAAAACT-ATGTTTGCACATTTNCANCCTTTAN-CAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CAT-ACAT-ATAA-TACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGC-TTAGATACT--AC--A--TTTT-ATAATGTA-TAC----------TCT-G-TATAAT---C--CTT----------------------GTA--------AA-------------------------A-----ATAT-G----------T---CT-----------------------C-------AT----G--TT-------AT------------------G------------TACATT--G-A----TAACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTA---TATTTTTTTTATT-TTTTTTTTNTNNTTTNTATACCATATTA-T---AC-TATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CATATTTATTA----AT--TA---T-A----TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGA-AAATAGCATGT-------TGAT-TGTTGAATTGGTACCAATAGGCACCGTCCCGTGGTATCTTTTGCACTGACAGTGAAGCATTTTTTGTTTTGTTGCATATTGATCACACGGTGGGTACCTACAAACTATAA-AAATCAAGT-TATTA--TG------TTT--TTTTTTTTTTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAAACTATG-TT-GCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCG-T-CCCG-TG-TATC--TTTTTGCAATACAGTGAAGTA-ATAAGCATC--T-TTACTGT-CTTGCATTAGGATACACGTGTGGTACCAAC-TAAAATACAT--------------------AA-GAATG-----GTAT-ATTATGTTAAAGAATAT-TC-ATGTTATGTACATTAT-----ATCT-TA---TTATA-CTATTGGTTTT--GGTT------GTATTAACCTTGGTAAGACT-ATGTTTGCACATT-ACATCCTTTAA-TAA-CA-TGGCA-TATTGA-G-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATTT--TAC-G-TTTTGCAT-ATG-TA-CA-CGGTAGGT-A---------------CATTACAT-AAAAATACAT-TCAAGTA-T-AT--ATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGCCTTAGATACT--CG--A--TTTTTATCATGTA-TACTTCTGTATAATCTTG-TAAAATATGT--TTT----------------------GCACATTTTCCAATGTTTATC-----------------A-----ACAT-G----------C---CT-----------------------C-------AT----G--TA-------AT------------------G------------TTAATT--GGA----TAACCACA-GTACT-TTC-TGGATTTTT-----------------------TTTTT-TT-TTTTTTTT----------------------------TATCGTAAA--GC-TGTT--GTAAAA--CTA-T-GA-CATATTGATTA----AT---------------C-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GAGCCCC-TATT--T-GG-ACAT--AAATAAATC-T--
gi|10 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaAAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TTTATTCTATA---A-C-TTAGATACT--AT-----TTTT-ATAAT-TA-TA-----------TCT-G-TATAAT---C--CTT----------------------GTA--------AATATTTTGGACTTTCCAAATTTTATCA-----ACAT-G--------------CT-----------------------C-------AT----G--TA-------AT------------------G-------------ACATT--G-AC---TA--CACA-GTACTATTCATGGNNNNNNNNNNN------NNNN---NNNNNNNNNNNNN-NNNNNNNNNNNN------------ATTACT---AC-TATTGTAAAAGCA-TGTT--GTAAAA--CTA-TTGA-CATATTTAT---------------T-A----TC-A-GCAATCATG-T-A---TATTATGGCACAAGA--GGCCCC-TGTT--T-GG-A-AT--AAATAAAT
gi|11 : gttcatatgtgaaatattttataaagataataataATTAAGATA-CA-CGGT-GGT-A---------------CCT-ACCT-ATA--TA----------A-T-AT-TATGTTAAAAATATG--TC--A-TG-TTATAT---TC-ATTGT-C--TA---AGC-TTA
gi|12 : --TTTT-ATAGTGTA---C----------TCT-GGTATAAT---C--CTTGTGAAACTATGTTTGCACATTTGCA--------AATTTATC-------------------A-----ACAT-G----------C---CT-----------------------C-------AT----G--TT-------AT------------------G------------TACATT--G-T----TAAAAACA-GTACC-TTC-T-GATTTTT-TTTT------TTTA---T-TATTTTTTATTATTATTATTATCATCATTAT----TATTACT---AC-TATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CATATTTTTT------T--TAT--T-A----TC-A-GCAATCATG-T-ATG-TATTAT-GCCGAAGA-GGtannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|13 : ATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-TAT-A---------------CTT-GAAT-TTGA-TACA---GAAGTATT-AT-CATGCTCCAAATGTC--TC--A-TG-TTATGT---TC-CTTGT-TTAAACACAG---TACATTCTGGAC--GATTTTT-GTTAAGTATTAC----------TAT---TATAAA---CATGTT----------------------GTA--------AA-------------------------ACTATCATAT-G----------T---AT-----------------------C-------AT----
gi|13 : gtattttagtgtgcattatgtgtgc-T---AC-TATTATAAA--CA-TGTT--GTAAAA--CTA-T----CATATGTAT---------------C-A----TC-A-ACAATCGTG-TAATG-TACTGT-GCCCAAGcaacaatcgtgtaatgtactgtgcccaag
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaatgtctcatgttatgttccttgtttaaacacagtacattctggacgatttttgttaagtatTACATGCT--GC--A--TTTG-ATGATGCA-GAA--------------G-TATCAT---C--ATG----------------------CTC--------CA-------------------------A-----AT---G----------T---CT-----------------------C-------AT----G--TT-------AT------------------G------------TGCATT--
gi|14 : cTGCAT------------------TTGATGA-TGCAGAAGTATCATCATGCTCCA-AATGTCTC-ATGTTATGTGCATTCTGGATTTTTTAAAAATTATTA-TTACTctggattttttaaaaattattattactattataaacatgttttgtaaactatcataattatatggtatgatcatgcaatcacatgtgccatgcccaagaggggcccctatttggatacacaaatca
gi|14 : ctacatgcTATTA-TT--AC-TATTATAAA--CA-TGTTTTGTAAA---CTA-T----CATAATTAT------ATGGTA---TGA----TC-ATGCAATCAC----ATG-TGCCAT-GCCCAAGAGGGGCCCC-TATT--T-GG---AT--ACACAAATC-attataaacatgttttgtaaactatcataattatatggtatgatcatgcaatcacatgtgccatgcccaagaggggcccctatttggatacacaaatca
gi|15 : ctacatgctgcatttgatgatgcagaagtatcatcatgctccaaatgtctcatgttatgtgcattctggattttttaaaaatTTTCTTTTAT-TACTAT-----T---AC-TGT-ATAAA--CAGTGTT--GTAAAA--CTG-T----CCTATGTATTA--------------------TC-A-GCAATCATG-T-ATG-TTCTAT---TCAAGA-GGATCCT-TATT--T-GG-A-AT--AAATAAATCAT--ATC-a
gi|16 : tgcctctcatagacattgcacaataccttctggaATAGTA-TT--AC-TATTGTAC---CA-TGTT--GTAAAAAACTA-TTGAACATTTTTATTT----AT--TAAACT-A----TC-A-GCA-TCATGAT-ATG-TATTAT-G-CCAAGACGCACCTA-TATT--TAAG-G-ATGAAAAT-AATC-T--ATC-TCATCTAT
gi|17 : attaTATTAGT---AT-TAATATAGA--CA-TGTT--GTAAAA-------------------------------A---T-A----TC-A------TATG-T-GTG-CATTAT-GCTCAAGA-GGACCAC-TGTT--T-GG-A-AT--AAATAAATCAT--ATCAT-ATCcta
gi|18 : cgggtttttggtgat-TTGA-CATATTTATTA--------------------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-atgtact
gi|19 : ttcattgcaagtttattcgtacatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-ACATGTACATAAAGTACAT-ACAT-ATGA-TACAT-TCAAATA-T-AT-TAT
gi|2 : TATGACAGA--TGTGAAACATATGCACA--AAATAACATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCGCGTGGTATCTTTTGCACT-ACAGTGAAGCATATTTTACTGTTTTGCTTTATGAT-ACACGGTGG-TACCTACA---TATAATACATCAGGTTTAGTA--TG------TTA--ATTTTTTTT---ATCTAAGCTTATACTACTA-GTATTATAATG------GTATGAACCTTGGAAAA-CTATG-TTTGCACATTTGCAATCTTATC-AACATTGCATATTGTTCAA-AGTAGT--ACC-AATAGC-ACCG-T-CC-G-TGGTATC--TTTA-GCACTACAGTGAAGTAT-TAAGCATT--TCTTACGGT-CTTGCATTAGGATACACG-GTGATACCAACATAAAATACAT------------------CCAA-GACTG-----GTAT-ATTATGTTAAA-AATATATC-ATGTTATGTACATCAT---GTATCTATAAGCTAATA-CTACTAGTTTTATGATTTACTCTGTATTAACCTTG-TAAAACT-ATGTTTGCACATTTGCATCCTTTAA-TAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-A---------------CAC-ACAT-ATAA-TACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTGTT---AGC-TTAGATACT--ACTAG--TTTT-ATAATGTA-TAC----------TCT-G-TATAAT---A--CTT----------------------GTA--------AA-------------------------A-----ACAT-G----------C---CT-----------------------C-------AT----G--TT-------AT------------------G------------TACATT--G-A----TAACCACA-GTACC-TTC-TGGATTTTTATTTTCCCCCCTTTANNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNATATTA-T---AC-TATTG-AAA--CA-TGTT--GTAAAA--CTA-TTGA-CATATTTATCAGTTTAT--TA---TCAGCATTC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|20 : -CATATATAT------AT--TA---T-------C-A-GCAACCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TA-T--T-GG-A-AT--AAATAAATC-
gi|21 : GA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-TAAATC-T-ATata
gi|23 : -TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTGTac
gi|3 : ATAATAAATCAAGTTTATTAATTGTTTTTTTTT--TTTTTTTTT---ATCTAAGCTTATACTA-TACGTATTATAATGTACTCAGTATGAACC-TGGAAAA-CTATGTTTTGCACATTTGCAATC-TATCAAACATGGCATATTG----AGAGTAGTCAACCGAATAGCAACCG-TCCC-GCTGGTATCTTTTTT-GCACTACAGTGAAGTA-ATAAGC-TTACTTTTACTGTCCTTGCATTAGGAT-CA-G-GTGGTACAT-CATAAAATACA-------------------TCAA-GACTG-----GTAT-AT--TGTTAAAGAATATCTCAATGTTATGTACATTA-----TATCT-TA---TTATACCTATTGGTTTTTTGG-------TGTATT-ACCTTG-TAAGACTGATGTTTGCACATTTAC--TCTTTAA-TAACCATTGGCATTATTGAAG-TAGTA-CAAT-GC-CCGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA--ATA----TATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-GGTAA---------------CAT-ACAT-A-AA-TACATGTCAAGTA---ATATATGTAATAAATGT---TC--A-TG--TATGT---TCTTTTAT-CTATA---AGC-TT-GATACT--AT-----TTTT-ATAATGTATTAC----------T-T-G-TATATT---C--CTT----------------------GTA--------AT-------------------------A-----ATATCGTTTGCACATTT---TT-----------------------C-------AT----GTTTT-------ATCACCATGCCTCATGTACTG------------TACATTCGA-A----TAACCA-A-GTACT-TTC-TGGAT-----TTTT------TTAA---TATTTTTTTT-------------TATTTTAT-TAC--TACTA-T--------TTGTAAA--CG-C-TT--GTTAAA--CTA-TTGA-CATATTTAT---------------T-A----TC-A--CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGG--CC-TATT--T-GG-A-AT--AAATg
gi|4 : TATGACAGA--TGTGAAACATATGTACGG-AAATAGCATGTATAAACATAGCATGTTGAATTGGTACCAATAG-CACCGTCCATTGGTATCTTTTGCACT-GCAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTACA---TATAATACATCAAGTTAATTA--TG------TTATTATTTTTTTT---ATCTACGCTTATACTACTA-GTATCATAATGTACTCAGTATGAACCTTGGAAAA-CTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ATCGTT-CC-G-TGGTATC--TTTT-GCACTACAGTGAAGTAT-TAAGTATA--TCTTACTGT-CTTGCATTAGGATACACA-GTGGTACTAACATAATATACA-------------------TCAA-GACTT-----TTAT-ATTATGTTAAA-AATATGTC-ATG-TATGTACATTAT---
gi|5 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaTACCAACATAAAATACATCAAGACTGGTATATTACATCAA-GACTG-----GTAT-ATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-----ATCT-TA---TT-TA-CTATTGGTTTTGTG----------TATTAACCTTG-TAAGACT-ATGTTTGCACATTTACATCCTTTAA-TAA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CAT-ACAT-A-AA-TACAT-TCAAGTA-T-AT-TATG-TAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGC--TAGATACT--AT-----TTTT-ATAATGTA-TAC----------TCT-G-TATAAT---C--CTT----------------------GTA--------AA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAAAC-------AT----GCCTC-------AT------------------GTAATG-------TACATT--G-A----TAACCACA-GTACT-TTC-TGGATTTTTATT-----------------TTTTTTTTA----------------TTGTA-AACATGTTG-T---A--------AAA--C--TATT--G--------------A-CATATTTAT---------------T-A----TC-A-GCAATCATG-T-ATG-TATTAT-GCCAAAGA-GGGCCCC-TATT--T-GG-A-AA--AAATAAATC-T--ATC-T-ATCTATaa
gi|6 : TACCAACATAAAATACATCAAGACTGGTATATTACATCAA-GACTG-----GTAT-ATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-----ATCT-TA---TTATA-CTATTGGTTTTGTG----------TATTAACCTTG-TAAGACT-ATGTTTGCACATTTACATCCTTTAAATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCC-GTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATA-ATT-CTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CAT-AC---ATAA-TACAT-TCAAGTA---ATATATG-TAAAAATGTC--TC--A-TG-TTATGT---TC--TTATACTATA---AGC-TTAGATACT--AT-----TTTT-ATAATGTA-TAC----------TCT-G-TATAAT---C--CTT----------------------GTA--------AA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAA-C-------AT----GCCTC-------ATGTAAT-------------G------------TACATT--G-A----TAACCACA-GTACT-TTC-TGGATTTTTATTT-------------------------TT-TTTTTTTTGTA--------AACATGTTG-TAAAAC-TATTG---A--CA-TATT-----------TA-TTA-------TCAGCA----AT--CA---T-G----T----------ATG-T------ATTAT-G-CCAAGA-GGGCCCC-TATT--T--G-A-AT--AAATAAATC-T--ATC-T-ATCTATatattt
gi|7 : aACTAGTTTTATGATTTACTCTGTATTAACCTCG-TAAAACT-ATGTTTGCACATTTGCATCCTTTAA-TAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAAC--A----TATATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-ATT-A---------------CAT-ACAT-ATAA-TACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGC-TTAGATACT--ACTAG--TTTT-ATAATGTA-TAC----------TCT-G-TATAAC---T--CTC----------------------GTA--------AA-------------------------A-----ATAT-G----------TTGGCA-----------------------CATTTGCAAT----G--TTTATCAACAT------------------GCCTCATGTTATGTACATT--G-A----TAACTACA-GTGCC-TTC-TGGATTTTT-TCCC------TTTA-----------TCA---------TTATCATTATCAT----TACTA--------TATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CACATTT---------T--TAT--T-A----TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAGGA-GGGCCCC-TATT--T-GG-A-AT--AAATAATTC-T--ATA-T-ATCTAa
gi|9 : TACATCCTTTAT--AA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-A----TATATA--TCTTACTG-TTTTACATTATGATACCA-CGGT-GTT-A---------------CAT-ACATAAAAA-TACAT-TCAAGTA-GAAT-TATG-TAAAAATGTCTTTC--ATTG-TTATGT---TC-TTTAT-CTATA---A---CTAGA---T--AC--A--TTTT-A-AATGTA-TAC----------TCT-GTTATAAT------CTT----------------------GTA--------AA-------------------------A-----AT-T-G----------T---TTGC---------------------C-------ATTTCAGT-TT-------ATCACCATGCCCTCAGTA--G------------TACATT--G-ACATGTAAACACGTGTTAT-TTC-TGG-TTTTTA----------TTTA----------TTTATT-TTTTTTTTTTAGTTT--------TATTA-C---TCATATTGTAAA--CA-TGTG--CTAAAC--TTAGTTGA-TAT-----TTA----AT-------T-A----TCAA-GCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GGGCCCCATGTTACT-GATG-AT--AAATAAAT--T--ATCTT-ATCcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT
Alignments
lowQualScore : 11111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 1 1111 1 1 111111 1111 11111 333333 11 1 222222 22 1 1 222 1 22 33 111 1 1 00000000000000000000 222 111 6666666666666666 1111 1 222222222222222 111 33333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111 1 999999999999999999999999999999999999999999999999999999999999999999 55555555555555555
lowQualScore : 88 7 2 7 7 3 4444 0 0 2 4 1 8 8 666666 77 4444 6 3 99 00000 777777 2 8 2 0 8 33 3 0 222222 55 0 0 111 0 2 33 11 3 555 6 0 3 2 0 77777777777777777777 6 6 6 333 8 444 0 8 0 0000000000000000 6 6 5 5 5 5 5 5 1 5 1 2222 6 0 4 1 4 4 4 4 555555555555555 4 8 6 4 111 8 9 55 55 4 4 777 4 8 777 4 55 44444 7 3 7 777 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 99999 88 2222 4 4 4 1 1 1 555555555555555555555555555555555555555555555555555555555555555555 2 2 33 2 33 33 2 2 33 7777777 00000000000000000 2 2 2 2 2 2 2 2 33 2 2 2 33 444 5 77 7
lowQualScore : .. . . . . . .... . . . . . . . ...... .. .... . . .. ..... ...... . . . . . .. . . ...... .. . . ... . . .. .. . ... . . . . . .................... . . . ... . ... . . . ................ . . . . . . . . . . . .... . . . . . . . . ............... . . . . ... . . .. .. . . ... . . ... . .. ..... . . . ... ................................................................................................................................................................... ..... .. .... . . . . . . .................................................................. . . .. . .. .. . . .. ....... ................. . . . . . . . . .. . . . .. ... . .. .
lowQualScore : 33 3 0 3 3 3 8888 0 0 5 0 0 0 0 000000 77 2222 7 5 22 00000 000000 2 0 8 8 0 22 2 0 222222 00 0 0 000 0 5 88 00 2 000 5 0 2 5 0 33333333333333333333 7 7 7 000 0 000 8 0 7 2222222222222222 7 7 7 7 7 7 7 7 7 7 4 1111 5 2 4 0 0 0 0 0 000000000000000 0 0 0 0 222 0 0 55 55 0 0 000 0 0 000 0 55 22222 3 6 3 888 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111 66 5555 0 0 0 8 7 5 333333333333333333333333333333333333333333333333333333333333333333 9 9 99 9 99 99 7 4 22 4444444 88888888888888888 5 5 5 5 5 5 5 5 44 5 5 5 44 777 7 99 3
consensus : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTT--T-TGCACT-ACG-GTGAAGCATNTTTTACTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATA-CAT----CAAGT-TTATTA--TGT--TTATTTTTT---TTTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCG-TCCCG-TGGTATCT-TTTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAAATACAT------------------TCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGA-T-----T-----GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----TAACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTA----------TT--T-TTTATTTTTTTT-TTGTNNTTNTTAA----TATTA-T-AC-TA-TTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CATATTT-A-----T-T-AT-A---T-A----TCA-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GG-GCCCC-TATT--TG-G-A-AT--AAATAA---ATC-T--ATC-TATCTAT
Reference ( family-1967 ) : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTT--T-TGCACT-ACA-GTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATA-NAT----CAAGT-TTATTA--TGT--TNNTTT------TTTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCG-T-CCG-TGGTATC--TTTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAAATACAT------------------TCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTACTGGTTTTGTGGTT-----T-----GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----TAACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTA----------TT--TTTTTATTTTTTTT-TTNTNNTTTTTAA----TATTA-T-AC-TA-TTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CATATTT-A-----T-T-ATTA---T-A----TCA-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GG-GCCCC-TATT--TG-G-A-AT--AAATAA---ATC-T--ATC-TATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGAAAATAGCATGT-------TGAT-TGTTGAATTGGTACCAATAGGCACCGTCCCGTGGTATCTT--T-TGCACTGACA-GTGAAGCATTTTTTGTTTTGTTGCATATTGATCACACGGTGGGTACCTAC--AAACTATAA-A-AAT----CAAGT-T-ATTA--TGT--TTTTTTTTT---TTTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAAACTATG--TTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCG-TCCCG-T-GTATCT-TTTTGCAATACAGTGAAGTA-ATAAGCATC--T-TTACTGT-CTTGCATTAGGATACACGTGTGGTACCAAC-TAAAATACAT--------------------AAGAATGGTATATTATGTTAAAGAATAT-TC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTTG-G--T-----T-----GTATTAACCTTGGTAAGACT-ATGTTTGCACA-TTACATCCTTT-AATAA-CA-TGGCA-TATTG-AG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATT--TTAC-G-TTTTGCA-TATG-TA-CA-CGGTAGGT-A---------------CATTACATAAAAATACAT-TCAAGTA-T-A--TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGCCTTAGATACT---C--GATTTTTATCATGTA-TACTTCTG-TATAAT---CTT----------------------GT-AA-------------------------A-----ATAT-G----------T---TTTGCACATTTTCCAATGTTTATCAAC-------AT----GCCTC-------AT------------------G------------TAATGTTAATTG-GA----TAACCACA-GTACT-TTC-TGGATTTTT-TTTT------TT----------------------TTTTTTTT-TTATCG----TAA-----A------GC-TG-TTGTA----------------AAA--CTA--TGA-CATATTG-A-----T-T-A--------A----TCA-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GA-GCCCC-TATT--TG-G-ACAT--AAATAA---ATC-T--
gi|10 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaAAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TTTATTCTATA---A--CTTAGATACT--AT-----TTTTATAAT-TA-TA--TCTG-TATAATC--CTT----------------------GTAAATATTTTGGACTTTCCAAATTTTATCA-----ACAT-G--------------CT------------------------C-------AT----G--TA-------AT------------------G-------------A-----CATT--GAC---TA--CACA-GTACTATTCATGGNNNNNNNNNNN------NNNN----------NN--NNNNNNNNNNNNNN-NNNNNNNNN---------ATTACT-AC-TA-TTGTAAAAGCA-TGTT--GTAAAA--CTA-TTGA-CATATTT-A-----T----------T-A----TCA-GCAATCATG-T-A---TATTATGGCACAAGA--G-GCCCC-TGTT--TG-G-A-AT--AAATAA---AT
gi|11 : gttcatatgtgaaatattttataaagataataataATTAAGATA-CA-CGGT-GGT-A---------------CC-TACCT-ATA-TA----------A-T-AT-TATGTTAAAAATATG--TC--A-TG-TTATAT---TC-ATTGT-C--TA---AG-CTTA
gi|11 : ATTAAGAT-ACACGGTGG-TACCTACCTA---TATAATATTATGTTAAAAAT-ATGTCA--TGT--T-ATAT------TCATTGTCTAAGCTTATA-NNNNN-NNNNNNNNNNNNNNNNNNNNCGAGCCTTGA-Atannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|12 : --TTTTATAGTGTA---C-TCTGGTATAATC--CTTGTGAAACTATGTTTGCACATTTGCAAATTTATC-------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GT----TAAAAACA-GTACC-TTC-TG-ATTTTT-TTTT------TTTA----------TTATTTTTTATTATTATTATTATCATCATTAT----TATTACT-AC-TA-TTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CATATTT-------T-T-TTTAT--T-A----TCA-GCAATCATG-T-ATG-TATTAT-GCCGAAGA-GG-tcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|13 : GTATTTTAGTGTGCATT-ATGTGTGCA-TATATCTGACTGTTTTGCATTAGGAT-ACACGATTA-TACTTGA--A---TTTGATA-CA-----GAAGTATTATCA--TGC--T
gi|13 : ATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-TAT-A---------------CT-TGAAT-TTGATACA---GAAGTATT-AT-CATGCTCCAAATGTC--TC--A-TG-TTATGT---TC-CTTGT-TTAAACACAG---TACATTCTGGAC--GATTTTTGTTAAGTATTAC-TAT--TATAAACATGTT----------------------GTAAA-------------------------ACTATCATAT-G----------T---AT------------------------C-------AT----ccaaatgtctcatgttatgttccttgtttaaacacagtacattctggacgatttttgttaagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|13 : gtattttagtgtgcattatgtgtgcTTTTTGTTAAG---TATTA----C-TA-TTATAAA--CA-TGTT--GTAAAA--CTA-T----CATATGT-A-----T----------C-A----TCA-ACAATCGTG-TAATG-TACTGT-GCCCAAGcaacaatcgtgtaatgtactgtgcccaag
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaatgtctcatgttatgttccttgtttaaacacagtacattctggacgaTACATGCT--GC--A--TTTGATGATGCA-GAA----G-TATCATC--ATG----------------------CTCCA-------------------------A-----AT---G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TG-----CATT--
gi|14 : cTT-CTGGATTTTTTAAAAATTATTA-TTAC-TA-TTATAAA--CA-TGTTTTGTAAA---CTA-T----CATAATT-A-----TAT-GGTA---TGA----TCATGCAATCAC----ATG-TGCCAT-GCCCAAGAGGG-GCCCC-TATT--TG-G---AT--ACACAA---ATC-ctggattttttaaaaattattattactattataaacatgttttgtaaactatcataattatatggtatgatcatgcaatcacatgtgccatgcccaagaggggcccctatttggatacacaaatca
gi|15 : ctacatgctgcatttgatgatgcagaagtatcatcatgctccaaatgtctcatgttatgtgcaT-G----------C---CT------------------------C----------------TC-------AT------------------A------------GA-----CATT--G---------CACA-ATACC-TTC-TGGAT-----TTCT------TTTA----------TT--a
gi|15 : TTTCTTTTAT----TACTA-TTAC-TG-T-ATAAA--CAGTGTT--GTAAAA--CTG-T----CCTATGT-A-----T-T-AT-------------CA-GCAATCATG-T-ATG-TTCTAT---TCAAGA-GG-ATCCT-TATT--TG-G-A-AT--AAATAA---ATCAT--ATC-actattactgtataaacagtgttgtaaaactgtcctatgtattatcagcaatcatgtatgttctattcaagaggatccttatttggaataaataaatcatatc
gi|16 : tgcctctcatagacattgcacaataccttctggaTTAA----TAGTA-TTAC-TA-TTGTAC---CA-TGTT--GTAAAAAACTA-TTGAACATTTTT-A-----T-TTATTAAACT-A----TCA-GCA-TCATGAT-ATG-TATTAT-GCC-AAGA-CGCACCTA-TATT--TAAG-G-ATGAAAATAATCTATC-TC-ATC-TATCTA
gi|17 : aTTTT-TGGTGATTATTAG----TATTA-------A-T-ATAGA--CA-TGTT--GTAAAA--------------------------------A---T-A----TCA------TATG-T-GTG-CATTAT-GCTCAAGA-GG-ACCAC-TGTT--TG-G-A-AT--AAATAA---ATCAT--ATCATATC
gi|18 : cggg-TTGA-CATATTT-A-----T-T-AT-------------CA-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GG-GCCCC-TATT--TG-G-A-AT--AAATAA---ATC-T--ATC-atgtact
gi|19 : ttcattgcaagtttattcgtacatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-ACATGTACATAAAGTACA-TACAT-ATGATACAT-TCAAATA-T-AT-TAT
gi|2 : TATGACAGA--TGTGAAACATATGCACA-AAATAACATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCGCGTGGTATCTT--T-TGCACT-ACA-GTGAAGCATATTTTACTGTTTTGCTTTATGAT-ACACGGTGG-TACCTAC--A---TATAATA-CAT----CAGGT-TTAGTA--TGT--TAATTT------TTTTTATCTAAGCTTATACTACTA-GTATTATAATG------GTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATTGCATATTGTTCAA-AGTAGT--ACC-AATAGC-ACCG-T-CCG-TGGTATC--TTTAGCACTACAGTGAAGTAT-TAAGCATT--TCTTACGGT-CTTGCATTAGGATACACG-GTGATACCAACATAAAATACAT------------------CCAAGACTGGTATATTATGTTAAA-AATATATC-ATGTTATGTACATCATGTATCTATAAGCTAATA-CTACTAGTTTTATGATTTACTCT-----GTATTAACCTT-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-A---------------CA-CACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTGTT---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAATA--CTT----------------------GTAAA-------------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----TAACCACA-GTACC-TTC-TGGATTTTTATTTTCCCCCCTTTANNNNNNNNNNNN--NNNNNNNNNNNNNN-NNNNNNNNNNNNA----TATTA-T-AC-TA-TTG-AAA--CA-TGTT--GTAAAA--CTA-TTGA-CATATTT-ATCAGTT-T-ATTA---TCAGCATTCA-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GG-GCCCC-TATT--TG-G-A-AT--AAATAA---ATC-T--ATC-TATCTAT
gi|20 : -CATATAT-A-----T---ATTA---T-------CA-GCAACCATG-T-ATG-TATTAT-GCCCAAGA-GG-GCCCC-TA-T--TG-G-A-AT--AAATAA---ATC-
gi|21 : GA-GG-GCCCC-TATT--TG-G-A-AT--AAATAA---ATC-TAAATC-TATata
gi|23 : -TATT--TG-G-A-AT--AAATAA---ATC-T--ATC-TATCTGTac
gi|3 : ATAATA-AAT----CAAGT-TTATTAATTGT--TTTTTTTTTTTTTTTTTATCTAAGCTTATACTA-TACGTATTATAATGTACTCAGTATGAACC-TGG-AAAACTATGTTTTGCACATTTGCAATC-TATCAAACATGGCATATTG----AGAGTAGTCAACCGAATAGCAACCG-TCCCGCTGGTATCTTTTTTGCACTACAGTGAAGTA-ATAAGC-TTACTTTTACTGTCCTTGCATTAGGAT-CA-G-GTGGTA-CATCATAAAATACA-------------------TCAAGACTGGTATAT--TGTTAAAGAATATCTCAATGTTATGTACATTA--TATCT-TA---TTATACCTATTGGTTTTTTGG-------T-----GTATT-ACCTT-GTAAGACTGATGTTTGCACATTTAC--TCTTT-AATAACCATTGGCATTATTGAAG-TAGTA-CAAT-GC-CCGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA--ATA----TATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-GGTAA---------------CA-TACAT-A-AATACATGTCAAGTA---ATATATGTAATAAATGT---TC--A-TG--TATGT---TCTTTTAT-CTATA---AG-CTT-GATACT--AT-----TTTTATAATGTATTAC-T-TG-TATATTC--CTT----------------------GTAAT-------------------------A-----ATATCGTTTGCACATTT---TT------------------------C-------AT----GTTTT-------ATCACCATGCCTCATGTACTG------------TA-----CATTCGAA----TAACCA-A-GTACT-TTC-TGG------ATTTT------TTTA-----------------ATATTTTTTTT-T----ATTT--------TATTACT-AC-TATTTGTAAA--CG-C-TT--GTTAAA--CTA-TTGA-CATATTT-A-----T-T-ATCA---------------CAATCATG-T-ATG-TATTAT-GCCCAAGA-GG-G--CC-TATT--TG-G-A-AT--AAATg
gi|4 : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATAGCATGTTGAATTGGTACCAATAG-CACCGTCCATTGGTATCTT--T-TGCACT-GCA-GTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATA-CAT----CAAGT-TAATTA--TGTTATTATTT------TTTTTATCTACGCTTATACTACTA-GTATCATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ATCGTT-CCG-TGGTATC--TTTTGCACTACAGTGAAGTAT-TAAGTATA--TCTTACTGT-CTTGCATTAGGATACACA-GTGGTACTAACATAATATACA-------------------TCAAGACTTTTATATTATGTTAAA-AATATGTC-ATG-TATGTACATTAT-
gi|5 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaTACCAACATAAAATACATCAAGACTGGTATATTACATCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT--ATCT-TA---TT-TA-CTATTGGTTTTGTG---------------TATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TACAT-A-AATACAT-TCAAGTA-T-AT-TATG-TAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-C-TAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAAA-C-------AT----GCCTC-------AT------------------GTAATG-------TA-----CATT--GA----TAACCACA-GTACT-TTC-TGGATTTTTATTT---------------------TT--TTTTTA---------TTGTA------AA----CA---------TG-TTGTAA----------------AA--CTA-TTGA-CATATTT-A-----T----------T-A----TCA-GCAATCATG-T-ATG-TATTAT-GCCAAAGA-GG-GCCCC-TATT--TG-G-A-AA--AAATAA---ATC-T--ATC-TATCTATaa
gi|6 : TACCAACATAAAATACATCAAGACTGGTATATTACATCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTTG----------T-----GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTTAAATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGT-CCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TAC---ATAATACAT-TCAAGTA---ATATATG-TAAAAATGTC--TC--A-TG-TTATGT---TC--TTATACTATA---AG-CTTAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAA--C-------AT----GCCTC-------ATGTAAT-------------G------------TA-----CATT--GA----TAACCACA-GTACT-TTC-TGGATTTTTATTT-------------------------------TTTTTTTT-TTGTA------AA----CA---------TG-TTGTAAA----------------A--CTA-TTGA-CATATTT-A-----T----------T-A----TCA-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GG-GCCCC-TATT--T--G-A-AT--AAATAA---ATC-T--ATC-TATCTATatattt
gi|7 : aACTAGTTTTATGATT-----TACTCTGTATTAACCTC-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAAC--A----TATATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-ATT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAACT--CTC----------------------GTAAA-------------------------A-----ATAT-G----------TTGGCA------------------------CATTTGCAAT----G--TTTATCAACAT------------------GCCTCATGTTATGTA-----CATT--GA----TAACTACA-GTGCC-TTC-TGGATTTTT-TCCC------TTTA-----------------TCA---------TTATCATTATCAT----TACTA------TA-TTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CACATTT-------T-T-AT-----T-A----TCA-GCAATCATG-T-ATG-TATTAT-GCCCAGGA-GG-GCCCC-TATT--TG-G-A-AT--AAATAA---TTC-T--ATA-TATCTAa
gi|9 : TACATCCTTT-A-TAA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-A----TATATA--TCTTACTG-TTTTACATTATGATACCA-CGGT-GTT-A---------------CA-TACATAAAAATACAT-TCAAGTA-GAAT-TATG-TAAAAATGTCTTTC--ATTG-TTATGT---TC-TTTAT-CTATA---A---CTAGA---T--AC--A--TTTTA-AATGTA-TAC-TCTGTTATAAT---CTT----------------------GTAAA-------------------------A-----AT-T-G----------T---TTGC----------------------C-------ATTTCAGT-TT-------ATCACCATGCCCTCAGTA--G------------TA-----CATT--GACATGTAAACACGTGTTAT-TTC-TGG---------TT------TTTA----------TT--TATTTATTTTTTTT-TTTTAGTTT--------TATTA-C-TCATA-TTGTAAA--CA-TGTG--CTAAAC--TTAGTTG---ATATTTAA-----T-T-ATCA------------A-GCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GG-GCCCCATGTTACTG-ATG-AT--AAATAA---AT--T--ATCTTATCcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT
Alignments
lowQualScore : 11111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 1 11 111111 111 1111111111 11 1 222222 22 1 1 1 22 33 111 1 1 00000000000000000000 222 111 444444444444444 1111 1 222222222222222 111 33333 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 55555555555555555555555
lowQualScore : 88 7 2 7 7 3 4444 0 22 2 1 1 8 8 666666 2 6 777 99 1 5555555555 2 8 2 0 8 33 3 0 222222 55 0 0 6 0 2 55 11 3 555 6 0 3 2 0 77777777777777777777 6 6 6 333 8 444 0 8 3 888888888888888 6 6 5 5 5 5 5 5 1 5 1 2222 6 0 4 1 4 4 4 4 555555555555555 4 8 6 4 111 8 9 55 55 4 4 777 4 8 777 4 55 44444 7 3 7 777 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 33 2 33 33 2 2 33 5555 44444444444444444444444 2 2 2 2 2 2 0 5 2 33 2 2 2 33 5 44 7 4
lowQualScore : .. . . . . . .... . .. . . . . . ...... . . ... .. . .......... . . . . . .. . . ...... .. . . . . . .. .. . ... . . . . . .................... . . . ... . ... . . . ............... . . . . . . . . . . . .... . . . . . . . . ............... . . . . ... . . .. .. . . ... . . ... . .. ..... . . . ... ............................................................................................................................................................................................................................................................................................ . .. . .. .. . . .. .... ....................... . . . . . . . . . .. . . . .. . .. . .
lowQualScore : 33 3 0 3 3 3 8888 0 00 5 0 0 0 0 000000 5 7 000 22 7 1111111111 2 0 8 8 0 22 2 0 222222 00 0 0 5 0 5 55 00 2 000 5 0 2 5 0 33333333333333333333 7 7 7 000 0 000 8 0 7 777777777777777 7 7 7 7 7 7 7 7 7 7 4 1111 5 2 4 0 0 0 0 0 000000000000000 0 0 0 0 222 0 0 55 55 0 0 000 0 0 000 0 55 22222 3 6 3 888 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 99 9 99 99 7 4 22 3333 11111111111111111111111 5 5 5 5 5 5 9 0 5 44 5 5 5 44 7 66 3 0
consensus : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTT--T-TGCACT-ACG-GTGAAGCATNTTTTACTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGT-T--TATTA--TGTT-TNTTNT---TTTTTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TTTTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAAATACAT------------------TCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--G-A----TAACCACA-GTACT-TTC-TGGATTTTTATTTT------TT--TA-----------T---T-AT-TTTTTTT-TTGTNNTTATTAN----TATTA-T-AC-TATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CAT----ATTTATTA---T--T------A-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
Reference ( family-1967 ) : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTT--T-TGCACT-ACG-GTGAAGCATNTTTTACTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGT-T--TATTA--TGTT-TATTTT---TTTTTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TTTTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAAATACAT------------------TCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGAT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--G-A----TAACCACA-GTACT-TTC-TGGATTTTTATTTT------TT--TA-----------TTTTTTAT-TTTTTTT-TTGTNNTTNTTAA----TATTA-T-AC-TATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CAT----ATTTATTA---TA-T------A-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGAAAATAGCATGT-------TGAT-TGTTGAATTGGTACCAATAGGCACCGTCCCGTGGTATCTT--T-TGCACTGACA-GTGAAGCATTTTTTGTTTTGTTGCATATTGATCACACGGTGGGTACCTAC--AAACTATAA-AAATCAAGT-T---ATTA--TGTT-TTTTTT---TTTTTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAAACTATG--TTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-T-GTATC-TTTTTGCAATACAGTGAAGTA-ATAAGCATC--T-TTACTGT-CTTGCATTAGGATACACGTGTGGTACCAAC-TAAAATACAT--------------------AAGAATGGTATATTATGTTAAAGAATAT-TC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTT--TGGT------T------GTATTAACCTTGGTAAGACT-ATGTTTGCACA-TTACATCCTTT-AATAA-CA-TGGCA-TATTG-AG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATT--TTAC-G-TTTTGCA-TATG-TA-CA-CGGTAGGT-A---------------CATTACATAAAAATACAT-TCAAGTA-T-A--TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGCCTTAGATACT---C--GATTTTTATCATGTA-TACTTCTG-TATAAT---CTT----------------------GT-AA-------------------------A-----ATAT-G----------T---TTTGCACATTTTCCAATGTTTATCAAC-------AT----GCCTC-------AT------------------G------------TAATGTTAATTG-G-A----TAACCACA-GTACT-TTC-TGGATTTTT-TTTT------TT--T-------------------T-TTTTTTT-T----------------------------ATCGTAAA--GC-TGTT--GTAAAA--CTA--TGA-CAT----ATTGATTA-------------A-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GAGCCCC-TATT--T-GG-ACAT--AAATAAATC-T--
gi|10 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaAAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TTTATTCTATA---A--CTTAGATACT--AT-----TTTTATAAT-TA-TA--TCTG-TATAATC--CTT----------------------GTAAATATTTTGGACTTTCCAAATTTTATCA-----ACAT-G--------------CT------------------------C-------AT----G--TA-------AT------------------G-------------A-----CATT--G-AC---TA--CACA-GTACTATTCATGGNNNNNNNNNNN------NN--NN-----------NNNNNNNN-NNNNNNN-NNNNNNNNNN--------ATTACT-AC-TATTGTAAAAGCA-TGTT--GTAAAA--CTA-TTGA-CAT----ATTTAT--------T------A-------TC-A-GCAATCATG-T-A---TATTATGGCACAAGA--GGCCCC-TGTT--T-GG-A-AT--AAATAAAT
gi|11 : gttcatatgtgaaatattttataaagataataataATTAAGATA-CA-CGGT-GGT-A---------------CC-TACCT-ATA-TA----------A-T-AT-TATGTTAAAAATATG--TC--A-TG-TTATAT---TC-ATTGT-C--TA---AG-CTTA
gi|11 : ATTAAGAT-ACACGGTGG-TACCTACCTA---TATAAT--ATTATGT-TAAAAATA--TGTCATGTTAT---ATTCATTGTCTAAGCTTATA-NNNNN-NNNNNNNNNNNNNNNNNNNNCGAGCCTTGA-Atannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|12 : --TTTTATAGTGTA---C-TCTGGTATAATC--CTTGTGAAACTATGTTTGCACATTTGCAAATTTATC-------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--G-T----TAAAAACA-GTACC-TTC-TG-ATTTTTTTTTT------TTATTA-----------TTTTTTAT-TATTATTATTATCATCATTAT----TATTACT-AC-TATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CAT----ATTTTTTT---TATT------A-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCGAAGA-GGtcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|13 : GTATTTTAGTGTGCATT-ATGTGTGCA-TATATCTGACTGTTTTGCATTAGGAT-ACACGATTA-TACTTGA--A---TTTGATACA-GAAGTAT--TATCA--TGCT-
gi|13 : ATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-TAT-A---------------CT-TGAAT-TTGATACA---GAAGTATT-AT-CATGCTCCAAATGTC--TC--A-TG-TTATGT---TC-CTTGT-TTAAACACAG---TACATTCTGGAC--GATTTTTGTTAAGTATTAC-TAT--TATAAACATGTT----------------------GTAAA-------------------------ACTATCATAT-G----------T---AT------------------------C-------AT----ccaaatgtctcatgttatgttccttgtttaaacacagtacattctggacgatttttgttaagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|13 : gtattttagtgtgcattatgtgtgcAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TT-----CCTT--GTT----TAAACACA-GTACA-TTC-TGGA-------------------------------------CGAT-TTTTGTT-AAGTATT----AC----TATTA-T-A---------AA--CA-TGTT--GTAAAA--CTA-T----CAT----ATGTAT--------C------A-------TC-A-ACAATCGTG-TAATG-TACTGT-GCCCAAGcaacaatcgtgtaatgtactgtgcccaag
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaTACATGCT--GC--A--TTTGATGATGCA-GAA----G-TATCATC--ATG----------------------CTCCA-------------------------A-----AT---G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TG-----CATT--
gi|14 : cTT-CTGGATTTTTTAAAAATTATTA-TTAC-TATTATAAA--CA-TGTTTTGTAAA---CTA-T----CAT----A---ATTA---TA-TGGTATGA-------TC-ATGCAATCAC----ATG-TGCCAT-GCCCAAGAGGGGCCCC-TATT--T-GG---AT--ACACAAATC-ctggattttttaaaaattattattactattataaacatgttttgtaaactatcataattatatggtatgatcatgcaatcacatgtgccatgcccaagaggggcccctatttggatacacaaatca
gi|15 : ctacatgctgcatttgatgatgcagaagtatcatcatgctccaaatgtctcatgttatgtgcaT-G----------C---CT------------------------C----------------TC-------AT------------------A------------GA-----CATT--G----------CACA-ATACC-TTC-TGGAT-----TTCT------TT--TA-----------T--------------------------TAC----TAT---T-AC-TG-TATAAA--CAGTGTT--GTAAAA--CTG-T----CCT----ATGTAT--------T------A-------TC-A-GCAATCATG-T-ATG-TTCTAT---TCAAGA-GGATCCT-TATT--T-GG-A-AT--AAATAAATCAT--ATC-a
gi|16 : TTAA----TAGTA-TTAC-TATTGTAC---CA-TGTT--GTAAAAAACTA-TTGAACATTTTTATTTATTA---AACT------A-------TC-A-GCA-TCATGAT-ATG-TATTAT-G-CCAAGACGCACCTA-TATT--TAAG-G-ATGAAAAT-AATC-T--ATC-TCATCTAT
gi|17 : aTTTT-TGGTGATTATTAG----TATTA-------AT-ATAGA--CA-TGTT--GTAAAA------------------------------A-T------A-------TC-A------TATG-T-GTG-CATTAT-GCTCAAGA-GGACCAC-TGTT--T-GG-A-AT--AAATAAATCAT--ATCAT-ATCcta
gi|18 : cggg-TTGA-CAT----ATTTATTA---T------------------C-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-atgtact
gi|19 : ttcattgcaagtttattcgtacatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-ACATGTACATAAAGTACA-TACAT-ATGATACAT-TCAAATA-T-AT-TAT
gi|2 : TATGACAGA--TGTGAAACATATGCACA-AAATAACATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCGCGTGGTATCTT--T-TGCACT-ACA-GTGAAGCATATTTTACTGTTTTGCTTTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAGGT-T--TAGTA--TGTT-AA---T---TTTTTTTATCTAAGCTTATACTACTA-GTATTATAATG------GTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATTGCATATTGTTCAA-AGTAGT--ACC-AATAGC-ACCGT-CCG-TGGTATC--TTTAGCACTACAGTGAAGTAT-TAAGCATT--TCTTACGGT-CTTGCATTAGGATACACG-GTGATACCAACATAAAATACAT------------------CCAAGACTGGTATATTATGTTAAA-AATATATC-ATGTTATGTACATCATGTATCTATAAGCTAATA-CTACTAGTTTTATGATTTACTCT------GTATTAACCTT-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-A---------------CA-CACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTGTT---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAATA--CTT----------------------GTAAA-------------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--G-A----TAACCACA-GTACC-TTC-TGGATTTTTATTTTCCCCCCTT--TANNNNNNNNNNNNNNNNNNN-NNNNNNN-NNNNNNNNNNNNA----TATTA-T-AC-TATTG-AAA--CA-TGTT--GTAAAA--CTA-TTGA-CAT----ATTTATCAGTTTATT------ATCAGCATTC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|20 : -CAT----ATATAT-A---T--T------A-------TC-A-GCAACCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TA-T--T-GG-A-AT--AAATAAATC-
gi|21 : GA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-TAAATC-T-ATata
gi|23 : -TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTGTac
gi|3 : ATAATAAATCAAGT-T--TATTAATTGTT-TTTTTTTTTTTTTTTTATCTAAGCTTATACTA-TACGTATTATAATGTACTCAGTATGAACC-TGG-AAAACTATGTTTTGCACATTTGCAATC-TATCAAACATGGCATATTG----AGAGTAGTCAACCGAATAGCAACCGTCCCGCTGGTATCTTTTTTGCACTACAGTGAAGTA-ATAAGC-TTACTTTTACTGTCCTTGCATTAGGAT-CA-G-GTGGTA-CATCATAAAATACA-------------------TCAAGACTGGTATAT--TGTTAAAGAATATCTCAATGTTATGTACATTA--TATCT-TA---TTATACCTATTGGTTTTTTGG-------T------GTATT-ACCTT-GTAAGACTGATGTTTGCACATTTAC--TCTTT-AATAACCATTGGCATTATTGAAG-TAGTA-CAAT-GC-CCGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA--ATA----TATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-GGTAA---------------CA-TACAT-A-AATACATGTCAAGTA---ATATATGTAATAAATGT---TC--A-TG--TATGT---TCTTTTAT-CTATA---AG-CTT-GATACT--AT-----TTTTATAATGTATTAC-T-TG-TATATTC--CTT----------------------GTAAT-------------------------A-----ATATCGTTTGCACATTT---TT------------------------C-------AT----GTTTT-------ATCACCATGCCTCATGTACTG------------TA-----CATTCGA-A----TAACCA-A-GTACT-TTC-TGG------ATTTT------TT--TA-----------------ATATTTTTTT-TTAT-TTTATTAC----TACTA-T------TTGTAAA--CG-C-TT--GTTAAA--CTA-TTGA-CAT----ATTTAT--------T------A-------TC-A--CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGG--CC-TATT--T-GG-A-AT--AAATg
gi|4 : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATAGCATGTTGAATTGGTACCAATAG-CACCGTCCATTGGTATCTT--T-TGCACT-GCA-GTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGT-T--AATTA--TG-T-TATTAT---TTTTTTTATCTACGCTTATACTACTA-GTATCATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ATCGTTCCG-TGGTATC--TTTTGCACTACAGTGAAGTAT-TAAGTATA--TCTTACTGT-CTTGCATTAGGATACACA-GTGGTACTAACATAATATACA-------------------TCAAGACTTTTATATTATGTTAAA-AATATGTC-ATG-TATGTACATTAT-
gi|5 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaTACCAACATAAAATACATCAAGACTGGTATATTACATCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT--ATCT-TA---TT-TA-CTATTGGTTTTGTG----------------TATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TACAT-A-AATACAT-TCAAGTA-T-AT-TATG-TAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-C-TAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAAA-C-------AT----GCCTC-------AT------------------GTAATG-------TA-----CATT--G-A----TAACCACA-GTACT-TTC-TGGATTTTTATTTT-----------------------TTTTTTA----------TTGTA------AA----CA---------TGTTGTA----------------AAA--CTA-TTGA-CAT----ATTTAT--------T------A-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCAAAGA-GGGCCCC-TATT--T-GG-A-AA--AAATAAATC-T--ATC-T-ATCTATaa
gi|6 : TACCAACATAAAATACATCAAGACTGGTATATTACATCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTTG----------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTTAAATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGT-CCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TAC---ATAATACAT-TCAAGTA---ATATATG-TAAAAATGTC--TC--A-TG-TTATGT---TC--TTATACTATA---AG-CTTAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAA--C-------AT----GCCTC-------ATGTAAT-------------G------------TA-----CATT--G-A----TAACCACA-GTACT-TTC-TGGATTTTTATTT-------------------------------T-TTTTTTT-TTGTA------AA----CA---------TGTTGTA----------------AAA--CTA-TTGA-CAT----ATTTAT--------T------A-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GGGCCCC-TATT--T--G-A-AT--AAATAAATC-T--ATC-T-ATCTATatattt
gi|7 : aACTAGTTTTATGAT------TTACTCTGTATTAACCTC-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAAC--A----TATATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-ATT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAACT--CTC----------------------GTAAA-------------------------A-----ATAT-G----------TTGGCA------------------------CATTTGCAAT----G--TTTATCAACAT------------------GCCTCATGTTATGTA-----CATT--G-A----TAACTACA-GTGCC-TTC-TGGATTTTT-TCCC------TT--TA---------------TCA----------TTATCATTATCAT----TACTA------TATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CAC----ATTT-TTA---T--T------A-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAGGA-GGGCCCC-TATT--T-GG-A-AT--AAATAATTC-T--ATA-T-ATCTAa
gi|9 : TACATCCTTT-A-TAA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-A----TATATA--TCTTACTG-TTTTACATTATGATACCA-CGGT-GTT-A---------------CA-TACATAAAAATACAT-TCAAGTA-GAAT-TATG-TAAAAATGTCTTTC--ATTG-TTATGT---TC-TTTAT-CTATA---A---CTAGA---T--AC--A--TTTTA-AATGTA-TAC-TCTGTTATAAT---CTT----------------------GTAAA-------------------------A-----AT-T-G----------T---TTGC----------------------C-------ATTTCAGT-TT-------ATCACCATGCCCTCAGTA--G------------TA-----CATT--G-ACATGTAAACACGTGTTAT-TTC-TGG-TTTTTATTTA------TT--TA-----------TTT----T-TTTTTTT-TAGTTT-----------TATTA-C-TCATATTGTAAA--CA-TGTG--CTAAAC--TTAGTTG---AT----ATTTA--A---T--T------A-------TCAA-GCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GGGCCCCATGTTACT-GATG-AT--AAATAAAT--T--ATCTT-ATCcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 1 222222 222 11 111 111 11 1 222222 22 1 1 1 22222 22 11111 1111 99999999999999999999 1 11 111 444444444444444 1111 1 222222222222222 111 33333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111 222222222222222222222222222222222222222222222222222222222222222222222222 22222222222222
lowQualScore : 88 7 2 7 7 3 3 6 1 0 0 0 222222 666 222 1 11 222 3 1 444 2 8 2 0 8 33 3 0 222222 55 0 0 6 0 2 00000 0 0 11 0 66666 3 8 0 8 1 2222 66666666666666666666 0 5 0 1 4 5 77 8 444 0 8 3 888888888888888 6 6 5 5 5 5 5 5 1 5 1 2222 6 0 4 1 4 4 4 4 555555555555555 4 8 6 4 111 8 9 55 55 4 4 777 4 8 777 4 55 44444 7 3 7 777 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88888 77 11111 3 1 3 3 3 0 666666666666666666666666666666666666666666666666666666666666666666666666 0 33 2 33 33 2 4 33 5555 33 11111111111111 33 0 8888888 2 2 2 2 2 2 0 5 2 33 2 2 2 33 5 44 7 4
lowQualScore : .. . . . . . . . . . . . ...... ... ... . .. ... . . ... . . . . . .. . . ...... .. . . . . . ..... . . .. . ..... . . . . . .... .................... . . . . . . .. . ... . . . ............... . . . . . . . . . . . .... . . . . . . . . ............... . . . . ... . . .. .. . . ... . . ... . .. ..... . . . ... ................................................................................................................................................................... ..... .. ..... . . . . . . ........................................................................ . .. . .. .. . . .. .... .. .............. .. . ....... . . . . . . . . . .. . . . .. . .. . .
lowQualScore : 33 3 0 3 3 3 3 0 0 7 0 0 222222 666 222 0 00 666 8 0 000 2 0 8 8 0 22 2 0 222222 00 0 0 5 0 5 66666 8 8 22 8 44444 2 0 8 0 4 1111 33333333333333333333 7 7 1 4 3 7 77 0 000 8 0 7 333333333333333 7 7 7 7 7 7 7 7 7 7 4 1111 5 2 4 0 0 0 0 0 000000000000000 0 0 0 0 222 0 0 55 55 0 0 000 0 0 000 0 55 22222 3 6 3 888 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33333 99 55555 6 4 6 6 6 8 999999999999999999999999999999999999999999999999999999999999999999999999 8 99 9 99 99 7 1 22 3333 44 44444444444444 44 4 1111111 5 5 5 5 5 5 9 0 5 44 5 5 5 44 7 66 3 0
consensus : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTA----------------TATTTTTT-TT-------TTGT-NTTATTANTATTA----CTATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CAT----A--TTTA-----T----TA--TTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
Reference ( family-1967 ) : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACGGTGAAGCATNTTTTACTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGTT--TATTA--TGTT-TNTTNTTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTA---------------TTATTTTTT-TT-------TTGTNNTTATTANTATTA-T-ACTATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CAT----A--TTTA-----T----TA--TTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGAAAATAGCATGT-------TGAT-TGTTGAATTGGTACCAATAGGCACCGTCCCGTGGTATCTTTTGCACTGACAGTGAAGCATTTTTTGTTTTGTTGCATATTGATCACACGGTGGGTACCTAC--AAACTATAA-AAATCAAGTT---ATTA--TGTT-TTTTTTTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAAACTATG--TTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-T-GTATC-TT--TTTGCAATACAGTGAAGTA-ATAAGCATC--T-TTACTGT-CTTGCATTAGGATACACGTGTGGTACCAAC-TAAA----ATACAT--------------------AAGAATGGTA-TATTATGTTAAAGAATAT-TC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTT--TGGT------T------GTATTAACCTTGGTAAGACT-ATGTTTGCACA-TTACATCCTTT-AATAA-CA-TGGCA-TATTG-AG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATT--TTAC-G-TTTTGCA-TATG-TA-CA-CGGTAGGT-A---------------CATTACATAAAAATACAT-TCAAGTA-T-A--TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGCCTTAGATACT---C--GATTTTTATCATGTA-TACTTCTG-TATAAT---CTT----------------------GT-AA-------------------------A-----ATAT-G----------T---TTTGCACATTTTCCAATGTTTATCAAC-------AT----GCCTC-------AT------------------G------------TAATGTTAATTG-GA----T-AACCACA-GTACT-TTC-TGGATTTTT-TTTT------TTT-------------------TTTTTT-TT------------------------------TATCGTAAA--GC-TGTT--GTAAAA--CTA--TGA-CAT----A--TTGA-----T----TA----A-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GAGCCCC-TATT--T-GG-ACAT--AAATAAATC-T--
gi|10 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaAAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TTTATTCTATA---A--CTTAGATACT--AT-----TTTTATAAT-TA-TA--TCTG-TATAATC--CTT----------------------GTAAATATTTTGGACTTTCCAAATTTTATCA-----ACAT-G--------------CT------------------------C-------AT----G--TA-------AT------------------G-------------A-----CATT--GAC---T-A--CACA-GTACTATTCATGGNNNNNNNNNNN------NNNN---------------NNNNNNNNN-NN-------NNNNNNNNNNNNNNATTACT-ACTATTGTAAAAGCA-TGTT--GTAAAA--CTA-TTGA-CAT----A--T--------T----TA--TTA-------TC-A-GCAATCATG-T-A---TATTATGGCACAAGA--GGCCCC-TGTT--T-GG-A-AT--AAATAAAT
gi|11 : gttcatatgtgaaatattttataaagataataataATTAAGATA-CA-CGGT-GGT-A---------------CC-TACCT-ATA-TA----------A-T-AT-TATGTTAAAAATATG--TC--A-TG-TTATAT---TC-ATTGT-C--TA---AG-CTTA
gi|11 : ATTAAGAT-ACACGGTGG-TACCTACCTA---TATAAT--ATTATGTTAAAAATA--TGTCATGTTATATT---CATTGTCTAAGCTTATA-NNNNN-NNNNNNNNNNNNNNNNNNNNCGAGCCTTGA-Atannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|12 : --TTTTATAGTGTA---C-TCTGGTATAATC--CTTGTGAAACTATGTTTGCACATTTGCAAATTTATC-------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GT----T-AAAAACA-GTACC-TTC-T-GATTTTT-TTTT------TTTA---------------TTATTTTTTATTATTATTATTATCATCATTATTATTACT-ACTATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CAT----ATTTTTT-----T----TA--TTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCGAAGA-GGtcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|13 : GTATT-TTAGTGTGCATTAT-GTGT-GCATATA--------TCTGACTGT-TTTGCATTAGGATACACG-ATTATACT----TGAATTTGATAC-----------------------AGA--AGTATTATCATGCTCCA-AATGTCTC-ATGTTATGTTCCTTGT-T
gi|13 : ATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-TAT-A---------------CT-TGAAT-TTGATACA---GAAGTATT-AT-CATGCTCCAAATGTC--TC--A-TG-TTATGT---TC-CTTGT-TTAAACACAG---TACATTCTGGAC--GATTTTTGTTAAGTATTAC-TAT--TATAAACATGTT----------------------GTAAA-------------------------ACTATCATAT-G----------T---AT------------------------C-------AT----taaacacagtacattctggacgatttttgttaagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|13 : gtattttagtgtgcattatgtgtgcAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TT-----CCTT--GT----TTAAACACA-GTACA-TTC-TGGACG-----------------------------------ATTTTT----------------GTTA--AGTATTA----CTATTATAAA--CA-TGTT--GTAAAA--CTA-T----CAT----A--T--------G----TA--TCA-------TC-A-ACAATCGTG-TAATG-TACTGT-GCCCAAGcaacaatcgtgtaatgtactgtgcccaag
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaTACATGCT--GC--A--TTTGATGATGCA-GAA----G-TATCATC--ATG----------------------CTCCA-------------------------A-----AT---G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TG-----CATT--
gi|14 : cATTATTATTA----CTATTATAAA--CA-TGTTTTGTAAA---CTA-T----CAT----A--ATTA-----TATGGTA--TGA-------TC-ATGCAATCAC----ATG-TGCCAT-GCCCAAGAGGGGCCCC-TATT--T-GG---AT--ACACAAATC-ctggattttttaaaaattattattactattataaacatgttttgtaaactatcataattatatggtatgatcatgcaatcacatgtgccatgcccaagaggggcccctatttggatacacaaatca
gi|15 : ctacatgctgcatttgatgatgcagaagtatcatcatgctccaaatgtctcatgttatgtgcattctggattttttaaaaT-G----------C---CT------------------------C----------------TC-------AT------------------A------------GA-----CATT--G----------CACA-ATACC-TTC-TGGATTTCT------------------------------------------------------TTTATTACTATTA----CTGT-ATAAA--CAGTGTT--GTAAAA--CTG-T----CCT----A--TGTA-----T----TA--T----------C-A-GCAATCATG-T-ATG-TTCTAT---TCAAGA-GGATCCT-TATT--T-GG-A-AT--AAATAAATCAT--ATC-a
gi|16 : ATTAATAGTA-TTACTATTGTAC---CA-TGTT--GTAAAAAACTA-TTGAACATTTTTA--TTTA-----T----TAAACTA-------TC-A-GCA-TCATGAT-ATG-TATTAT-G-CCAAGACGCACCTA-TATT--TAAG-G-ATGAAAAT-AATC-T--ATC-TCATCTAT
gi|17 : TT-TT-------TGGTGATTATTAGTATTA------AT-ATAGA--CA-TGTT--GTAAAA--ATA-T----CAT----A--T----------------------------------------G-T-GTG-CATTAT-GCTCAAGA-GGACCAC-TGTT--T-GG-A-AT--AAATAAATCAT--ATCAT-ATCcta
gi|18 : cggg-TTGA-CAT----A--TTTA-----T---------TA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-atgtact
gi|19 : ttcattgcaagtttattcgtacatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-ACATGTACATAAAGTACA-TACAT-ATGATACAT-TCAAATA-T-AT-TAT
gi|2 : TATGACAGA--TGTGAAACATATGCACA-AAATAACATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCGCGTGGTATCTTTTGCACT-ACAGTGAAGCATATTTTACTGTTTTGCTTTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAGGTT--TAGTA--TGT----TAATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATG------GTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATTGCATATTGTTCAA-AGTAGT--ACC-AATAGC-ACCGT-CCG-TGGTATC--T--TTAGCACTACAGTGAAGTAT-TAAGCATT--TCTTACGGT-CTTGCATTAGGATACACG-GTGATACCAACATAAA----ATACAT------------------CCAAGACTGGTA-TATTATGTTAAA-AATATATC-ATGTTATGTACATCATGTATCTATAAGCTAATA-CTACTAGTTTTATGATTTACTCT------GTATTAACCTT-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-A---------------CA-CACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTGTT---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAATA--CTT----------------------GTAAA-------------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACC-TTC-TGGATTTTTATTTTCCCCCCTTTANNNNNNNNNNNNNNNNNNNNNNNN-NN-------NNNNNNNNNNNNATATTA-T-ACTATTG-AAA--CA-TGTT--GTAAAA--CTA-TTGA-CAT----A--TTTATCAGTT----TA--TTATCAGCATTC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|20 : -CAT----A--TATA-----T-----A--TTA-------TC-A-GCAACCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TA-T--T-GG-A-AT--AAATAAATC-
gi|21 : GA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-TAAATC-T-ATata
gi|23 : -TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTGTac
gi|3 : ATAATAAATCAAGTT--TATTAATTGTT-TTTTTTTTTTTTTTTTATCTAAGCTTATACTA-TACGTATTATAATGTACTCAGTATGAACC-TGG-AAAACTATGTTTTGCACATTTGCAATC-TATCAAACATGGCATATTG----AGAGTAGTCAACCGAATAGCAACCGTCCCGCTGGTATCTTT--TTTGCACTACAGTGAAGTA-ATAAGC-TTACTTTTACTGTCCTTGCATTAGGAT-CA-G-GTGGTA-CATCATAAA----ATACA-------------------TCAAGACTGGTA-TAT--TGTTAAAGAATATCTCAATGTTATGTACATTA--TATCT-TA---TTATACCTATTGGTTTTTTGG-------T------GTATT-ACCTT-GTAAGACTGATGTTTGCACATTTAC--TCTTT-AATAACCATTGGCATTATTGAAG-TAGTA-CAAT-GC-CCGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA--ATA----TATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-GGTAA---------------CA-TACAT-A-AATACATGTCAAGTA---ATATATGTAATAAATGT---TC--A-TG--TATGT---TCTTTTAT-CTATA---AG-CTT-GATACT--AT-----TTTTATAATGTATTAC-T-TG-TATATTC--CTT----------------------GTAAT-------------------------A-----ATATCGTTTGCACATTT---TT------------------------C-------AT----GTTTT-------ATCACCATGCCTCATGTACTG------------TA-----CATTCGAA----T-AACCA-A-GTACT-TTC-TGG------ATTTT------TTTA---------------ATA-TTTTT-TT-------TTAT-TTTATTACTACTA-T-----TTGTAAA--CG-C-TT--GTTAAA--CTA-TTGA-CAT----A--TTTA-----T----TA--TCA-------------CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGG--CC-TATT--T-GG-A-AT--AAATg
gi|4 : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATAGCATGTTGAATTGGTACCAATAG-CACCGTCCATTGGTATCTTTTGCACT-GCAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGTT--AATTA--TG-T-TATTATTTT---TTTTATCTACGCTTATACTACTA-GTATCATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ATCGTTCCG-TGGTATC--T--TTTGCACTACAGTGAAGTAT-TAAGTATA--TCTTACTGT-CTTGCATTAGGATACACA-GTGGTACTAACATAAT----ATACA-------------------TCAAGACTTTTA-TATTATGTTAAA-AATATGTC-ATG-TATGTACATTAT-
gi|5 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaTACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT--ATCT-TA---TT-TA-CTATTGGTTTTGTG----------------TATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TACAT-A-AATACAT-TCAAGTA-T-AT-TATG-TAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-C-TAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAAA-C-------AT----GCCTC-------AT------------------GTAATG-------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTT-----------------------------TTTTTT-TA-------TTGTA------AACA--------TGTTGTAA----------------AA--CTA-TTGA-CAT----A--T--------T----TA--TTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCAAAGA-GGGCCCC-TATT--T-GG-A-AA--AAATAAATC-T--ATC-T-ATCTATaa
gi|6 : TACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTTG----------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTTAAATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGT-CCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TAC---ATAATACAT-TCAAGTA---ATATATG-TAAAAATGTC--TC--A-TG-TTATGT---TC--TTATACTATA---AG-CTTAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAA--C-------AT----GCCTC-------ATGTAAT-------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTT-----------------------------TTTTTT-TT-------TTG-------------------------TAAA--CA-TGTT--GTAAAA--CTA-TTGA-CAT----A--T--------T----TA--TTA-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GGGCCCC-TATT--T--G-A-AT--AAATAAATC-T--ATC-T-ATCTATatattt
gi|7 : aACTAGTTTTATGAT------TTACTCTGTATTAACCTC-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAAC--A----TATATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-ATT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAACT--CTC----------------------GTAAA-------------------------A-----ATAT-G----------TTGGCA------------------------CATTTGCAAT----G--TTTATCAACAT------------------GCCTCATGTTATGTA-----CATT--GA----T-AACTACA-GTGCC-TTC-TGGATTTTT-TCCC------TTTA---------------TCA----------------TTATCATTATCATTACTA-----TATTGTAAA--CA-TGTT--GTAAAA--CTA-TTGA-CAC----A--TTT------T----TA--TTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAGGA-GGGCCCC-TATT--T-GG-A-AT--AAATAATTC-T--ATA-T-ATCTAa
gi|9 : TACATCCTTT-A-TAA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-A----TATATA--TCTTACTG-TTTTACATTATGATACCA-CGGT-GTT-A---------------CA-TACATAAAAATACAT-TCAAGTA-GAAT-TATG-TAAAAATGTCTTTC--ATTG-TTATGT---TC-TTTAT-CTATA---A---CTAGA---T--AC--A--TTTTA-AATGTA-TAC-TCTGTTATAAT---CTT----------------------GTAAA-------------------------A-----AT-T-G----------T---TTGC----------------------C-------ATTTCAGT-TT-------ATCACCATGCCCTCAGTA--G------------TA-----CATT--GACATGT-AAACACGTGTTAT-TTC-TGG-TTTTTATTTA------TTTA---------------TT-TTTTTT-TT-------TTAGTTTTATTAC--TCA-----TATTGTAAA--CA-TGTG--CTAAAC--TTAGTTG---AT----A--TTTA-----------A--TTA-------TCAA-GCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GGGCCCCATGTTACT-GATG-AT--AAATAAAT--T--ATCTT-ATCcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT
Alignments
lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 1 1 1 1 222222 111 11 111 111 11 1 222222 22 1 1 1 22222 22 11111 1111 99999999999999999999 1 11 111 444444444444444 1111 1 222222222222222 111 33333 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222222222222222
lowQualScore : 88 7 2 7 7 3 3 0 0 222222 555 999 1 11 222 3 1 444 2 8 2 0 8 33 3 0 222222 55 0 0 6 0 2 00000 0 0 11 0 66666 3 8 0 8 1 2222 66666666666666666666 0 5 0 1 4 5 77 8 444 0 8 3 888888888888888 6 6 5 5 5 5 5 5 1 5 1 2222 6 0 4 1 4 4 4 4 555555555555555 4 8 6 4 111 8 9 55 55 4 4 777 4 8 777 4 55 44444 7 3 7 777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 555 33 2 33 33 2 4444 5555 33 4444444444444444 0 8888888 2 2 2 2 2 2 0 5 2 33 2 2 2 33 5 44 7 4
lowQualScore : .. . . . . . . . . ...... ... ... . .. ... . . ... . . . . . .. . . ...... .. . . . . . ..... . . .. . ..... . . . . . .... .................... . . . . . . .. . ... . . . ............... . . . . . . . . . . . .... . . . . . . . . ............... . . . . ... . . .. .. . . ... . . ... . .. ..... . . . ... ................................................................................................................................................................................................................................................................................................. ... .. . .. .. . .... .... .. ................ . ....... . . . . . . . . . .. . . . .. . .. . .
lowQualScore : 33 3 0 3 3 3 3 0 0 222222 444 888 0 00 666 8 4 000 2 0 8 8 0 22 2 0 222222 00 0 0 5 0 5 66666 8 8 22 8 44444 2 0 8 0 4 1111 33333333333333333333 7 7 1 4 3 7 77 0 000 8 0 7 333333333333333 7 7 7 7 7 7 7 7 7 7 4 1111 5 2 4 0 0 0 0 0 000000000000000 0 0 0 0 222 0 0 55 55 0 0 000 0 0 000 0 55 22222 3 6 3 888 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 888 99 9 99 99 7 1111 3333 44 8888888888888888 4 1111111 5 5 5 5 5 5 9 0 5 44 5 5 5 44 7 66 3 0
consensus : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGG-----ATTTTTATTTT------TTTA-----------------T-ATTTTTT-------TT-T---TN----TTATTANTAT--TAC--TATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
Reference ( family-1967 ) : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGG-----ATTTTTATTTT------TTTA-----------------T-ATTTTTT-------TT-TT-GTN----TTATTANTAT--TAC--TATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGAAAATAGCATGT-------TGAT-TGTTGAATTGGTACCAATAGGCACCGTCCCGTGGTATCTTTTGCACTGACAGTGAAGCATTTTTTGTTTTGTTGCATATTGATCACACGGTGGGTACCTAC--AAACTATAA-AAATCAAGTT---ATTA--TGTT-TTTTTTTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAAACTATG--TTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-T-GTATC-TT--TTTGCAATACAGTGAAGTA-ATAAGCATC--T-TTACTGT-CTTGCATTAGGATACACGTGTGGTACCAAC-TAAA----ATACAT--------------------AAGAATGGTA-TATTATGTTAAAGAATAT-TC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTT--TGGT------T------GTATTAACCTTGGTAAGACT-ATGTTTGCACA-TTACATCCTTT-AATAA-CA-TGGCA-TATTG-AG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATT--TTAC-G-TTTTGCA-TATG-TA-CA-CGGTAGGT-A---------------CATTACATAAAAATACAT-TCAAGTA-T-A--TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGCCTTAGATACT---C--GATTTTTATCATGTA-TACTTCTG-TATAAT---CTT----------------------GT-AA-------------------------A-----ATAT-G----------T---TTTGCACATTTTCCAATGTTTATCAAC-------AT----GCCTC-------AT------------------G------------TAATGTTAATTG-GA----T-AACCACA-GTACT-TTC-TGG-----ATTTTT-TTTT------TTT---------------------TTTTTT-------TT----------------------------TATCGTAAA--GC-TG--TTGT--AAAACTA--TG-ACA----TA--TTGA-----T----T--A--A-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GAGCCCC-TATT--T-GG-ACAT--AAATAAATC-T--
gi|10 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaAAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TTTATTCTATA---A--CTTAGATACT--AT-----TTTTATAAT-TA-TA--TCTG-TATAATC--CTT----------------------GTAAATATTTTGGACTTTCCAAATTTTATCA-----ACAT-G--------------CT------------------------C-------AT----G--TA-------AT------------------G-------------A-----CATT--GAC---T-A--CACA-GTACTATTCATGGNNNNNNNNNNNNNNNN------NNNN-----------------N-NNNNNNN-------NN-NN-NNN----NNNNNATTAC--TAC--TATTGTAAAAGCA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-A---TATTATGGCACAAGA--GGCCCC-TGTT--T-GG-A-AT--AAATAAAT
gi|11 : gttcatatgtgaaatattttataaagataataataATTAAGATA-CA-CGGT-GGT-A---------------CC-TACCT-ATA-TA----------A-T-AT-TATGTTAAAAATATG--TC--A-TG-TTATAT---TC-ATTGT-C--TA---AG-CTTA
gi|11 : ATTAAGAT-ACACGGTGG-TACCTACCTA---TATAAT--ATTATGTTAAAAATA--TGTCATGTTATATT---CATTGTCTAAGCTTATA-NNNNN-NNNNNNNNNNNNNNNNNNNNCGAGCCTTGA-Atannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|12 : --TTTTATAGTGTA---C-TCTGGTATAATC--CTTGTGAAACTATGTTTGCACATTTGCAAATTTATC-------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GT----T-AAAAACA-GTACC-TTC-TG------ATTTTT-TTTT------TTTA-----------------TTATTTTTTATTATTATTATT-ATCATCATTATTATTAC--TAC--TATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TATTTTTT-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCGAAGA-GGtcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|13 : GTATT-TTAGTGTGCATTAT-GTGT-GCATATA--------TCTGACTGT-TTTGCATTAGGATACACG-ATTATACT----TGAATTTGATAC-----------------------AGA--AGTATTATCATGCTCCA-AATGTCTC-ATGTTATGTTCCTTGT-T
gi|13 : ATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-TAT-A---------------CT-TGAAT-TTGATACA---GAAGTATT-AT-CATGCTCCAAATGTC--TC--A-TG-TTATGT---TC-CTTGT-TTAAACACAG---TACATTCTGGAC--GATTTTTGTTAAGTATTAC-TAT--TATAAACATGTT----------------------GTAAA-------------------------ACTATCATAT-G----------T---AT------------------------C-------AT----taaacacagtacattctggacgatttttgttaagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|13 : gtattttagtgtgcattatgtgtgcAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TT-----CCTT--GT----TTAAACACA-GTACA-TTC-TGG-----ACG-------------------------------------ATTTTT----------------G----TTA--AGTAT--TAC--TATTATAAA--CA-TG--TTGT--AAAACTA-T----CA----TA--T--------G----T--ATCA-------TC-A-ACAATCGTG-TAATG-TACTGT-GCCCAAGcaacaatcgtgtaatgtactgtgcccaag
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaTACATGCT--GC--A--TTTGATGATGCA-GAA----G-TATCATC--ATG----------------------CTCCA-------------------------A-----AT---G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TG-----CA--------------------------TTC-TGG-----ATTTT-------------TTA-----------------A-AA---------------------------ATTATTAT--TAC--TATTATAAA--CA-TGTTTTGT---AAACTA-T----CA----TA--ATTA-----TATGGT--ATGA-------TC-ATGCAATCA---C-ATG-TGCCAT-GCCCAAGAGGGGCCCC-TATT--T-GG---AT--ACACAAATC-
gi|15 : cT-G----------C---CT------------------------C----------------TC-------AT------------------A------------GA-----CATT--G----------CACA-ATACC-TTC-TGG-----ATTTCT--------------------------------------------------------T----TTATTACTAT--TAC--TGT-ATAAA--CAGTG--TTGT--AAAACTG-T----CC----TA--TGTA-----T----T--AT----------C-A-GCAATCATG-T-ATG-TTCTAT---TCAAGA-GGATCCT-TATT--T-GG-A-AT--AAATAAATCAT--ATC-a
gi|16 : ----TTAATAGTAT--TAC--TATTGT-AC--CA-TG--TTGTAAAAAACTA-TTGAACATTTTTA--TTTA-----T----TAAACTA-------TC-A-GC-ATCATGAT-ATG-TATTAT-G-CCAAGACGCACCTA-TATT--TAAG-G-ATGAAAAT-AATC-T--ATC-TCATCTAT
gi|17 : aTT-------TT-TG-GTGA---TTATTAGTAT--TAA--TAT---AGA--CA-TG--TTGT--AAAAATA-T----CA----TA--T----------------------------------------G-T-GTG-CATTAT-GCTCAAGA-GGACCAC-TGTT--T-GG-A-AT--AAATAAATCAT--ATCAT-ATCcta
gi|18 : cggg-TTG-ACA----TA--TTTA-----T---------TA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-atgtact
gi|19 : ttcattgcaagtttattcgtacatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-ACATGTACATAAAGTACA-TACAT-ATGATACAT-TCAAATA-T-AT-TAT
gi|2 : TATGACAGA--TGTGAAACATATGCACA-AAATAACATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCGCGTGGTATCTTTTGCACT-ACAGTGAAGCATATTTTACTGTTTTGCTTTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAGGTT--TAGTA--TGT----TAATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATG------GTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATTGCATATTGTTCAA-AGTAGT--ACC-AATAGC-ACCGT-CCG-TGGTATC--T--TTAGCACTACAGTGAAGTAT-TAAGCATT--TCTTACGGT-CTTGCATTAGGATACACG-GTGATACCAACATAAA----ATACAT------------------CCAAGACTGGTA-TATTATGTTAAA-AATATATC-ATGTTATGTACATCATGTATCTATAAGCTAATA-CTACTAGTTTTATGATTTACTCT------GTATTAACCTT-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-A---------------CA-CACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTGTT---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAATA--CTT----------------------GTAAA-------------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACC-TTC-TGG-----ATTTTTATTTTCCCCCCTTTANNNNNNNNNNNNNNNNNN-NNNNNNN-------NN-NN-NNN----NNNNNNATATTATAC--TATTG-AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTATCAGTT----T--ATTATCAGCATTC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|20 : CA----TA--TATA-----T-------ATTA-------TC-A-GCAACCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TA-T--T-GG-A-AT--AAATAAATC-
gi|21 : GA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-TAAATC-T-ATata
gi|23 : -TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTGTac
gi|3 : ATAATAAATCAAGTT--TATTAATTGTT-TTTTTTTTTTTTTTTTATCTAAGCTTATACTA-TACGTATTATAATGTACTCAGTATGAACC-TGG-AAAACTATGTTTTGCACATTTGCAATC-TATCAAACATGGCATATTG----AGAGTAGTCAACCGAATAGCAACCGTCCCGCTGGTATCTTT--TTTGCACTACAGTGAAGTA-ATAAGC-TTACTTTTACTGTCCTTGCATTAGGAT-CA-G-GTGGTA-CATCATAAA----ATACA-------------------TCAAGACTGGTA-TAT--TGTTAAAGAATATCTCAATGTTATGTACATTA--TATCT-TA---TTATACCTATTGGTTTTTTGG-------T------GTATT-ACCTT-GTAAGACTGATGTTTGCACATTTAC--TCTTT-AATAACCATTGGCATTATTGAAG-TAGTA-CAAT-GC-CCGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA--ATA----TATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-GGTAA---------------CA-TACAT-A-AATACATGTCAAGTA---ATATATGTAATAAATGT---TC--A-TG--TATGT---TCTTTTAT-CTATA---AG-CTT-GATACT--AT-----TTTTATAATGTATTAC-T-TG-TATATTC--CTT----------------------GTAAT-------------------------A-----ATATCGTTTGCACATTT---TT------------------------C-------AT----GTTTT-------ATCACCATGCCTCATGTACTG------------TA-----CATTCGAA----T-AACCA-A-GTACT-TTC-TGG-----AT-----TTTT------TTAA-----------------T-A-TTTTT-------TT-TT-ATT----TTATTACTAC--TAT----TTGTAAA--CG-C---TTGT--TAAACTA-TTG-ACA----TA--TTTA-----T----T--ATCA-------------CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGG--CC-TATT--T-GG-A-AT--AAATg
gi|4 : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATAGCATGTTGAATTGGTACCAATAG-CACCGTCCATTGGTATCTTTTGCACT-GCAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGTT--AATTA--TG-T-TATTATTTT---TTTTATCTACGCTTATACTACTA-GTATCATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ATCGTTCCG-TGGTATC--T--TTTGCACTACAGTGAAGTAT-TAAGTATA--TCTTACTGT-CTTGCATTAGGATACACA-GTGGTACTAACATAAT----ATACA-------------------TCAAGACTTTTA-TATTATGTTAAA-AATATGTC-ATG-TATGTACATTAT-
gi|5 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaTACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT--ATCT-TA---TT-TA-CTATTGGTTTTGTG----------------TATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TACAT-A-AATACAT-TCAAGTA-T-AT-TATG-TAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-C-TAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAAA-C-------AT----GCCTC-------AT------------------GTAATG-------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGG-----ATTTTTATTTT------TTT---------------------TTT-----------------------------------------ATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCAAAGA-GGGCCCC-TATT--T-GG-A-AA--AAATAAATC-T--ATC-T-ATCTATaa
gi|6 : TACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTTG----------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTTAAATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGT-CCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TAC---ATAATACAT-TCAAGTA---ATATATG-TAAAAATGTC--TC--A-TG-TTATGT---TC--TTATACTATA---AG-CTTAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAA--C-------AT----GCCTC-------ATGTAAT-------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGG-----ATTTTTATTTT------TTT---------------------TTTT-----------------------------------------TTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GGGCCCC-TATT--T--G-A-AT--AAATAAATC-T--ATC-T-ATCTATatattt
gi|7 : aACTAGTTTTATGAT------TTACTCTGTATTAACCTC-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAAC--A----TATATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-ATT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAACT--CTC----------------------GTAAA-------------------------A-----ATAT-G----------TTGGCA------------------------CATTTGCAAT----G--TTTATCAACAT------------------GCCTCATGTTATGTA-----CATT--GA----T-AACTACA-GTGCC-TTC-TGG-----ATTTTT-TCCC------TTTA-----------------TCAT-------------------TA----TCATTATCAT--TACTATATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----CA--TTT------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAGGA-GGGCCCC-TATT--T-GG-A-AT--AAATAATTC-T--ATA-T-ATCTAa
gi|9 : TACATCCTTT-A-TAA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-A----TATATA--TCTTACTG-TTTTACATTATGATACCA-CGGT-GTT-A---------------CA-TACATAAAAATACAT-TCAAGTA-GAAT-TATG-TAAAAATGTCTTTC--ATTG-TTATGT---TC-TTTAT-CTATA---A---CTAGA---T--AC--A--TTTTA-AATGTA-TAC-TCTGTTATAAT---CTT----------------------GTAAA-------------------------A-----AT-T-G----------T---TTGC----------------------C-------ATTTCAGT-TT-------ATCACCATGCCCTCAGTA--G------------TA-----CATT--GACATGT-AAACACGTGTTAT-TTC-TGG------TTTTTATTTA------TTTA-----------------T-TTTTTTT-------TT-TTAGTT----TTATTAC--T--CA---TATTGTAAA--CA-TG--TGCT--AAACTTAGTTG---A----TA--TTTA-------------ATTA-------TCAA-GCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GGGCCCCATGTTACT-GATG-AT--AAATAAAT--T--ATCTT-ATCcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 1 222222 111 11 111 111 11 1 222222 22 1 1 1 22222 22 11111 1111 99999999999999999999 1 11 111 444444444444444 1111 1 222222222222222 111 33333 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222222222222
lowQualScore : 88 7 2 7 7 3 3 0 0 222222 555 999 1 11 222 3 1 444 2 8 2 0 8 33 3 0 222222 55 0 0 6 0 2 00000 0 0 11 0 66666 3 8 0 8 1 2222 66666666666666666666 0 5 0 1 4 5 77 8 444 0 8 3 888888888888888 6 6 5 5 5 5 5 5 1 5 1 2222 6 0 4 1 4 4 4 4 555555555555555 4 8 6 4 111 8 9 55 55 4 4 777 4 8 777 4 55 44444 7 3 7 777 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 555555 33 2 33 33 2 4444 5555 33 4444444444444444 0 8888888 2 2 2 2 2 2 0 5 2 33 2 2 2 33 5 44 7 4
lowQualScore : .. . . . . . . . . ...... ... ... . .. ... . . ... . . . . . .. . . ...... .. . . . . . ..... . . .. . ..... . . . . . .... .................... . . . . . . .. . ... . . . ............... . . . . . . . . . . . .... . . . . . . . . ............... . . . . ... . . .. .. . . ... . . ... . .. ..... . . . ... ................................................................................................................................................................................................................................................................................................ . ...... .. . .. .. . .... .... .. ................ . ....... . . . . . . . . . .. . . . .. . .. . .
lowQualScore : 33 3 0 3 3 3 3 0 0 222222 444 888 0 00 666 8 4 000 2 0 8 8 0 22 2 0 222222 00 0 0 5 0 5 66666 8 8 22 8 44444 2 0 8 0 4 1111 33333333333333333333 7 7 1 4 3 7 77 0 000 8 0 7 333333333333333 7 7 7 7 7 7 7 7 7 7 4 1111 5 2 4 0 0 0 0 0 000000000000000 0 0 0 0 222 0 0 55 55 0 0 000 0 0 000 0 55 22222 3 6 3 888 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 111111 99 9 99 99 7 1111 3333 44 8888888888888888 4 1111111 5 5 5 5 5 5 9 0 5 44 5 5 5 44 7 66 3 0
consensus : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTA-------------------T-ATTTTTT----------TT----T--NTTATT-------ATTATT--AC--TATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
Reference ( family-1967 ) : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTA-------------------T-ATTTTTT----------TT----T-TNTTATT-------ANTATT--AC--TATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGAAAATAGCATGT-------TGAT-TGTTGAATTGGTACCAATAGGCACCGTCCCGTGGTATCTTTTGCACTGACAGTGAAGCATTTTTTGTTTTGTTGCATATTGATCACACGGTGGGTACCTAC--AAACTATAA-AAATCAAGTT---ATTA--TGTT-TTTTTTTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAAACTATG--TTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-T-GTATC-TT--TTTGCAATACAGTGAAGTA-ATAAGCATC--T-TTACTGT-CTTGCATTAGGATACACGTGTGGTACCAAC-TAAA----ATACAT--------------------AAGAATGGTA-TATTATGTTAAAGAATAT-TC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTT--TGGT------T------GTATTAACCTTGGTAAGACT-ATGTTTGCACA-TTACATCCTTT-AATAA-CA-TGGCA-TATTG-AG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATT--TTAC-G-TTTTGCA-TATG-TA-CA-CGGTAGGT-A---------------CATTACATAAAAATACAT-TCAAGTA-T-A--TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGCCTTAGATACT---C--GATTTTTATCATGTA-TACTTCTG-TATAAT---CTT----------------------GT-AA-------------------------A-----ATAT-G----------T---TTTGCACATTTTCCAATGTTTATCAAC-------AT----GCCTC-------AT------------------G------------TAATGTTAATTG-GA----T-AACCACA-GTACT-TTC-TGGATTTTT-TTTT------TTT-----------------------TTTTTT----------TT--------------------------------TATCGTAAA--GC-TG--TTGT--AAAACTA--TG-ACA----TA--TTGA-----T----T--A--A-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GAGCCCC-TATT--T-GG-ACAT--AAATAAATC-T--
gi|10 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaAAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TTTATTCTATA---A--CTTAGATACT--AT-----TTTTATAAT-TA-TA--TCTG-TATAATC--CTT----------------------GTAAATATTTTGGACTTTCCAAATTTTATCA-----ACAT-G--------------CT------------------------C-------AT----G--TA-------AT------------------G-------------A-----CATT--GAC---T-A--CACA-GTACTATTCATGGNNNNNNNNNNN------NNNN-------------------N-NNNNNNN----------NN----N-NNNNNNNNNNNNNNATTACT--AC--TATTGTAAAAGCA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-A---TATTATGGCACAAGA--GGCCCC-TGTT--T-GG-A-AT--AAATAAAT
gi|11 : gttcatatgtgaaatattttataaagataataataATTAAGATA-CA-CGGT-GGT-A---------------CC-TACCT-ATA-TA----------A-T-AT-TATGTTAAAAATATG--TC--A-TG-TTATAT---TC-ATTGT-C--TA---AG-CTTA
gi|11 : ATTAAGAT-ACACGGTGG-TACCTACCTA---TATAAT--ATTATGTTAAAAATA--TGTCATGTTATATT---CATTGTCTAAGCTTATA-NNNNN-NNNNNNNNNNNNNNNNNNNNCGAGCCTTGA-Atannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|12 : --TTTTATAGTGTA---C-TCTGGTATAATC--CTTGTGAAACTATGTTTGCACATTTGCAAATTTATC-------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GT----T-AAAAACA-GTACC-TTC-TG-ATTTTT-TTTT------TTTA-------------------TTATTTTTTATTATTATTATTATCAT-CATTATT-------ATTACT--AC--TATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TATTTTTT-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCGAAGA-GGtcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|13 : GTATT-TTAGTGTGCATTAT-GTGT-GCATATA--------TCTGACTGT-TTTGCATTAGGATACACG-ATTATACT----TGAATTTGATAC-----------------------AGA--AGTATTATCATGCTCCA-AATGTCTC-ATGTTATGTTCCTTGT-T
gi|13 : ATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-TAT-A---------------CT-TGAAT-TTGATACA---GAAGTATT-AT-CATGCTCCAAATGTC--TC--A-TG-TTATGT---TC-CTTGT-TTAAACACAG---TACATTCTGGAC--GATTTTTGTTAAGTATTAC-TAT--TATAAACATGTT----------------------GTAAA-------------------------ACTATCATAT-G----------T---AT------------------------C-------AT----taaacacagtacattctggacgatttttgttaagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|13 : gtattttagtgtgcattatgtgtgcAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TT-----CCTT--GT----TTAAACACA-GTACA-TTC-TGGACG---------------------------------------ATTTTT--------------------GTTA---------AGTATT--AC--TATTATAAA--CA-TG--TTGT--AAAACTA-T----CA----TA--T--------G----T--ATCA-------TC-A-ACAATCGTG-TAATG-TACTGT-GCCCAAGcaacaatcgtgtaatgtactgtgcccaag
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaTACATGCT--GC--A--TTTGATGATGCA-GAA----G-TATCATC--ATG----------------------CTCCA-------------------------A-----AT---G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TG-----CAT--------------------------TC-TGGATTTTT-------------TA-------------------A-AA---------------------------ATT-------ATTATT--AC--TATTATAAA--CA-TGTTTTGT---AAACTA-T----CA----TA--ATTA-----TATGGT--ATGA-------TC-ATGCAATCA---C-ATG-TGCCAT-GCCCAAGAGGGGCCCC-TATT--T-GG---AT--ACACAAATC-
gi|15 : cT-G----------C---CT------------------------C----------------TC-------AT------------------A------------GA-----CATT--G----------CACA-ATACC-TTC-TGGATTTCT--------------------------------------------------------------TTTATT-------ACTATT--AC--TGT-ATAAA--CAGTG--TTGT--AAAACTG-T----CC----TA--TGTA-----T----T--AT----------C-A-GCAATCATG-T-ATG-TTCTAT---TCAAGA-GGATCCT-TATT--T-GG-A-AT--AAATAAATCAT--ATC-a
gi|16 : TTAAT-------AGTATT--AC--TATTGT-AC--CA-TG--TTGTAAAAAACTA-TTGAACATTTTTA--TTTA-----T----TAAACTA-------TC-A-GC-ATCATGAT-ATG-TATTAT-G-CCAAGACGCACCTA-TATT--TAAG-G-ATGAAAAT-AATC-T--ATC-TCATCTAT
gi|17 : aTT----------TT----T-GGTGATT-------ATTAGT--AT--TAATATAGA--CA-TG--TTGT--AAAAATA-T----CA----TA--T----------------------------------------G-T-GTG-CATTAT-GCTCAAGA-GGACCAC-TGTT--T-GG-A-AT--AAATAAATCAT--ATCAT-ATCcta
gi|18 : cggg-TTG-ACA----TA--TTTA-----T---------TA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-atgtact
gi|19 : ttcattgcaagtttattcgtacatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-ACATGTACATAAAGTACA-TACAT-ATGATACAT-TCAAATA-T-AT-TAT
gi|2 : TATGACAGA--TGTGAAACATATGCACA-AAATAACATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCGCGTGGTATCTTTTGCACT-ACAGTGAAGCATATTTTACTGTTTTGCTTTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAGGTT--TAGTA--TGT----TAATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATG------GTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATTGCATATTGTTCAA-AGTAGT--ACC-AATAGC-ACCGT-CCG-TGGTATC--T--TTAGCACTACAGTGAAGTAT-TAAGCATT--TCTTACGGT-CTTGCATTAGGATACACG-GTGATACCAACATAAA----ATACAT------------------CCAAGACTGGTA-TATTATGTTAAA-AATATATC-ATGTTATGTACATCATGTATCTATAAGCTAATA-CTACTAGTTTTATGATTTACTCT------GTATTAACCTT-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-A---------------CA-CACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTGTT---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAATA--CTT----------------------GTAAA-------------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACC-TTC-TGGATTTTTATTTTCCCCCCTTTANNNNNNNNNNNNNNNNNNNN-NNNNNNN----------NN----N-NNNNNNN-------NATATTATAC--TATTG-AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTATCAGTT----T--ATTATCAGCATTC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|20 : CA----TA--TATA-----T-------ATTA-------TC-A-GCAACCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TA-T--T-GG-A-AT--AAATAAATC-
gi|21 : GA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-TAAATC-T-ATata
gi|23 : -TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTGTac
gi|3 : ATAATAAATCAAGTT--TATTAATTGTT-TTTTTTTTTTTTTTTTATCTAAGCTTATACTA-TACGTATTATAATGTACTCAGTATGAACC-TGG-AAAACTATGTTTTGCACATTTGCAATC-TATCAAACATGGCATATTG----AGAGTAGTCAACCGAATAGCAACCGTCCCGCTGGTATCTTT--TTTGCACTACAGTGAAGTA-ATAAGC-TTACTTTTACTGTCCTTGCATTAGGAT-CA-G-GTGGTA-CATCATAAA----ATACA-------------------TCAAGACTGGTA-TAT--TGTTAAAGAATATCTCAATGTTATGTACATTA--TATCT-TA---TTATACCTATTGGTTTTTTGG-------T------GTATT-ACCTT-GTAAGACTGATGTTTGCACATTTAC--TCTTT-AATAACCATTGGCATTATTGAAG-TAGTA-CAAT-GC-CCGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA--ATA----TATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-GGTAA---------------CA-TACAT-A-AATACATGTCAAGTA---ATATATGTAATAAATGT---TC--A-TG--TATGT---TCTTTTAT-CTATA---AG-CTT-GATACT--AT-----TTTTATAATGTATTAC-T-TG-TATATTC--CTT----------------------GTAAT-------------------------A-----ATATCGTTTGCACATTT---TT------------------------C-------AT----GTTTT-------ATCACCATGCCTCATGTACTG------------TA-----CATTCGAA----T-AACCA-A-GTACT-TTC-TGGAT-----TTTT------TTAA-------------------T-ATTTTTT----------TT----TATTTTATT-------ACTACT--AT----TTGTAAA--CG-C---TTGT--TAAACTA-TTG-ACA----TA--TTTA-----T----T--ATCA-------------CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGG--CC-TATT--T-GG-A-AT--AAATg
gi|4 : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATAGCATGTTGAATTGGTACCAATAG-CACCGTCCATTGGTATCTTTTGCACT-GCAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGTT--AATTA--TG-T-TATTATTTT---TTTTATCTACGCTTATACTACTA-GTATCATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ATCGTTCCG-TGGTATC--T--TTTGCACTACAGTGAAGTAT-TAAGTATA--TCTTACTGT-CTTGCATTAGGATACACA-GTGGTACTAACATAAT----ATACA-------------------TCAAGACTTTTA-TATTATGTTAAA-AATATGTC-ATG-TATGTACATTAT-
gi|5 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaTACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT--ATCT-TA---TT-TA-CTATTGGTTTTGTG----------------TATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TACAT-A-AATACAT-TCAAGTA-T-AT-TATG-TAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-C-TAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAAA-C-------AT----GCCTC-------AT------------------GTAATG-------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTT-----------------------TT------------------------------------------------TATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCAAAGA-GGGCCCC-TATT--T-GG-A-AA--AAATAAATC-T--ATC-T-ATCTATaa
gi|6 : TACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTTG----------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTTAAATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGT-CCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TAC---ATAATACAT-TCAAGTA---ATATATG-TAAAAATGTC--TC--A-TG-TTATGT---TC--TTATACTATA---AG-CTTAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAA--C-------AT----GCCTC-------ATGTAAT-------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTT-----------------------TTTT------------------------------------------------TTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GGGCCCC-TATT--T--G-A-AT--AAATAAATC-T--ATC-T-ATCTATatattt
gi|7 : aACTAGTTTTATGAT------TTACTCTGTATTAACCTC-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAAC--A----TATATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-ATT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAACT--CTC----------------------GTAAA-------------------------A-----ATAT-G----------TTGGCA------------------------CATTTGCAAT----G--TTTATCAACAT------------------GCCTCATGTTATGTA-----CATT--GA----T-AACTACA-GTGCC-TTC-TGGATTTTT-TCCC------TTTA-------------------TCA----------------------T-TATCATT-------ATCATT--ACTATATTGTAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----CA--TTT------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAGGA-GGGCCCC-TATT--T-GG-A-AT--AAATAATTC-T--ATA-T-ATCTAa
gi|9 : TACATCCTTT-A-TAA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-A----TATATA--TCTTACTG-TTTTACATTATGATACCA-CGGT-GTT-A---------------CA-TACATAAAAATACAT-TCAAGTA-GAAT-TATG-TAAAAATGTCTTTC--ATTG-TTATGT---TC-TTTAT-CTATA---A---CTAGA---T--AC--A--TTTTA-AATGTA-TAC-TCTGTTATAAT---CTT----------------------GTAAA-------------------------A-----AT-T-G----------T---TTGC----------------------C-------ATTTCAGT-TT-------ATCACCATGCCCTCAGTA--G------------TA-----CATT--GACATGT-AAACACGTGTTAT-TTC-TGG-TTTTTATTTA------TTTA-------------------T-TTTTTTT----------TT----T-TAGTTTT-------ATTACT--CA--TATTGTAAA--CA-TG--TGCT--AAACTTAGTTG---A----TA--TTTA-------------ATTA-------TCAA-GCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GGGCCCCATGTTACT-GATG-AT--AAATAAAT--T--ATCTT-ATCcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 1 222222 111 11 111 111 11 1 222222 22 1 1 1 22222 22 11111 1111 99999999999999999999 1 11 111 444444444444444 1111 1 222222222222222 111 33333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111 2222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222
lowQualScore : 88 7 2 7 7 3 3 0 0 222222 555 999 1 11 222 3 1 444 2 8 2 0 8 33 3 0 222222 55 0 0 6 0 2 00000 0 0 11 0 66666 3 8 0 8 1 2222 66666666666666666666 0 5 0 1 4 5 77 8 444 0 8 3 888888888888888 6 6 5 5 5 5 5 5 1 5 1 2222 6 0 4 1 4 4 4 4 555555555555555 4 8 6 4 111 8 9 55 55 4 4 777 4 8 777 4 55 44444 7 3 7 777 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88888 33333333 3 2 3 33 3 4444444444444444444444444444444444444444444444444444444444444444444444 2 9999999 33 2 33 33 2 4444 5555 33 4444444444444444 0 8888888 2 2 2 2 2 2 0 5 2 33 2 2 2 33 5 44 7 4
lowQualScore : .. . . . . . . . . ...... ... ... . .. ... . . ... . . . . . .. . . ...... .. . . . . . ..... . . .. . ..... . . . . . .... .................... . . . . . . .. . ... . . . ............... . . . . . . . . . . . .... . . . . . . . . ............... . . . . ... . . .. .. . . ... . . ... . .. ..... . . . ... ................................................................................................................................................................... ..... ........ . . . .. . ...................................................................... . ....... .. . .. .. . .... .... .. ................ . ....... . . . . . . . . . .. . . . .. . .. . .
lowQualScore : 33 3 0 3 3 3 3 0 0 222222 444 888 0 00 666 8 4 000 2 0 8 8 0 22 2 0 222222 00 0 0 5 0 5 66666 8 8 22 8 44444 2 0 8 0 4 1111 33333333333333333333 7 7 1 4 3 7 77 0 000 8 0 7 333333333333333 7 7 7 7 7 7 7 7 7 7 4 1111 5 2 4 0 0 0 0 0 000000000000000 0 0 0 0 222 0 0 55 55 0 0 000 0 0 000 0 55 22222 3 6 3 888 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33333 22222222 3 5 3 55 3 7777777777777777777777777777777777777777777777777777777777777777777777 9 3333333 99 9 99 99 7 1111 3333 44 8888888888888888 4 1111111 5 5 5 5 5 5 9 0 5 44 5 5 5 44 7 66 3 0
consensus : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTAT-ATTTTTTTTTNTTATT---------------ATTATTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
Reference ( family-1967 ) : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTAT-ATTTTTTTTTNTTATT---------------ATTATTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGAAAATAGCATGT-------TGAT-TGTTGAATTGGTACCAATAGGCACCGTCCCGTGGTATCTTTTGCACTGACAGTGAAGCATTTTTTGTTTTGTTGCATATTGATCACACGGTGGGTACCTAC--AAACTATAA-AAATCAAGTT---ATTA--TGTT-TTTTTTTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAAACTATG--TTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-T-GTATC-TT--TTTGCAATACAGTGAAGTA-ATAAGCATC--T-TTACTGT-CTTGCATTAGGATACACGTGTGGTACCAAC-TAAA----ATACAT--------------------AAGAATGGTA-TATTATGTTAAAGAATAT-TC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTT--TGGT------T------GTATTAACCTTGGTAAGACT-ATGTTTGCACA-TTACATCCTTT-AATAA-CA-TGGCA-TATTG-AG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATT--TTAC-G-TTTTGCA-TATG-TA-CA-CGGTAGGT-A---------------CATTACATAAAAATACAT-TCAAGTA-T-A--TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGCCTTAGATACT---C--GATTTTTATCATGTA-TACTTCTG-TATAAT---CTT----------------------GT-AA-------------------------A-----ATAT-G----------T---TTTGCACATTTTCCAATGTTTATCAAC-------AT----GCCTC-------AT------------------G------------TAATGTTAATTG-GA----T-AACCACA-GTACT-TTC-TGGATTTTT-TTTT------TTT----TTTTTTTT--------------------------------------------TA-TCGT-------AAA--GC-TG--TTGT--AAAACTA--TG-ACA----TA--TTGA-----T----T--A--A-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GAGCCCC-TATT--T-GG-ACAT--AAATAAATC-T--
gi|10 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaAAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TTTATTCTATA---A--CTTAGATACT--AT-----TTTTATAAT-TA-TA--TCTG-TATAATC--CTT----------------------GTAAATATTTTGGACTTTCCAAATTTTATCA-----ACAT-G--------------CT------------------------C-------AT----G--TA-------AT------------------G-------------A-----CATT--GAC---T-A--CACA-GTACTATTCATGGNNNNNNNNNNN------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-------ATTACTAC--------------TA-TTGT-------AAAAGCA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-A---TATTATGGCACAAGA--GGCCCC-TGTT--T-GG-A-AT--AAATAAAT
gi|11 : gttcatatgtgaaatattttataaagataataataATTAAGATA-CA-CGGT-GGT-A---------------CC-TACCT-ATA-TA----------A-T-AT-TATGTTAAAAATATG--TC--A-TG-TTATAT---TC-ATTGT-C--TA---AG-CTTA
gi|11 : ATTAAGAT-ACACGGTGG-TACCTACCTA---TATAAT--ATTATGTTAAAAATA--TGTCATGTTATATT---CATTGTCTAAGCTTATA-NNNNN-NNNNNNNNNNNNNNNNNNNNCGAGCCTTGA-Atannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|12 : --TTTTATAGTGTA---C-TCTGGTATAATC--CTTGTGAAACTATGTTTGCACATTTGCAAATTTATC-------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GT----T-AAAAACA-GTACC-TTC-TG-ATTTTT-TTTT------TTTATTATTTTTTATTATTATTATTATCATCATTATTATTACTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TATTTTTT-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCGAAGA-GGtcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|13 : GTATT-TTAGTGTGCATTAT-GTGT-GCATATA--------TCTGACTGT-TTTGCATTAGGATACACG-ATTATACT----TGAATTTGATAC-----------------------AGA--AGTATTATCATGCTCCA-AATGTCTC-ATGTTATGTTCCTTGT-T
gi|13 : ATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-TAT-A---------------CT-TGAAT-TTGATACA---GAAGTATT-AT-CATGCTCCAAATGTC--TC--A-TG-TTATGT---TC-CTTGT-TTAAACACAG---TACATTCTGGAC--GATTTTTGTTAAGTATTAC-TAT--TATAAACATGTT----------------------GTAAA-------------------------ACTATCATAT-G----------T---AT------------------------C-------AT----taaacacagtacattctggacgatttttgttaagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|13 : gtattttagtgtgcattatgtgtgcAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TT-----CCTT--GT----TTAAACACA-GTACA-TTC-TGGACG--------------------ATTTTT----GTTA-----------------AGTATTAC--------------TA-TTAT-------AAA--CA-TG--TTGT--AAAACTA-T----CA----TA--T--------G----T--ATCA-------TC-A-ACAATCGTG-TAATG-TACTGT-GCCCAAGcaacaatcgtgtaatgtactgtgcccaag
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaTACATGCT--GC--A--TTTGATGATGCA-GAA----G-TATCATC--ATG----------------------CTCCA-------------------------A-----AT---G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TG-----CAT--------------------------TC-TGGATTTTT-------------TAA-AA-----------ATT---------------ATTATTAC--------------TA-TTAT-------AAA--CA-TGTTTTGT---AAACTA-T----CA----TA--ATTA-----TATGGT--ATGA-------TC-ATGCAATCA---C-ATG-TGCCAT-GCCCAAGAGGGGCCCC-TATT--T-GG---AT--ACACAAATC-
gi|15 : cT-G----------C---CT------------------------C----------------TC-------AT------------------A------------GA-----CATT--G----------CACA-ATACC-TTC-TGGATTTCT---------------------------TTTATT---------------ACTATTAC--------------TG-T-AT-------AAA--CAGTG--TTGT--AAAACTG-T----CC----TA--TGTA-----T----T--AT----------C-A-GCAATCATG-T-ATG-TTCTAT---TCAAGA-GGATCCT-TATT--T-GG-A-AT--AAATAAATCAT--ATC-a
gi|16 : TTAAT---------------AGTATTAC--------------TA-TTGT--------AC--CA-TG--TTGTAAAAAACTA-TTGAACATTTTTA--TTTA-----T----TAAACTA-------TC-A-GC-ATCATGAT-ATG-TATTAT-G-CCAAGACGCACCTA-TATT--TAAG-G-ATGAAAAT-AATC-T--ATC-TCATCTAT
gi|17 : aTTTTTGGTGATT---------------ATTAGTAT--------------TA-ATAT-------AGA--CA-TG--TTGT--AAAAATA-T----CA----TA--T----------------------------------------G-T-GTG-CATTAT-GCTCAAGA-GGACCAC-TGTT--T-GG-A-AT--AAATAAATCAT--ATCAT-ATCcta
gi|18 : cggg-TTG-ACA----TA--TTTA-----T---------TA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-atgtact
gi|19 : ttcattgcaagtttattcgtacatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-ACATGTACATAAAGTACA-TACAT-ATGATACAT-TCAAATA-T-AT-TAT
gi|2 : TATGACAGA--TGTGAAACATATGCACA-AAATAACATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCGCGTGGTATCTTTTGCACT-ACAGTGAAGCATATTTTACTGTTTTGCTTTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAGGTT--TAGTA--TGT----TAATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATG------GTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATTGCATATTGTTCAA-AGTAGT--ACC-AATAGC-ACCGT-CCG-TGGTATC--T--TTAGCACTACAGTGAAGTAT-TAAGCATT--TCTTACGGT-CTTGCATTAGGATACACG-GTGATACCAACATAAA----ATACAT------------------CCAAGACTGGTA-TATTATGTTAAA-AATATATC-ATGTTATGTACATCATGTATCTATAAGCTAATA-CTACTAGTTTTATGATTTACTCT------GTATTAACCTT-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-A---------------CA-CACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTGTT---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAATA--CTT----------------------GTAAA-------------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACC-TTC-TGGATTTTTATTTTCCCCCCTTTAN-NNNNNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNNNNNNNATA-TTATACTATTGAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTATCAGTT----T--ATTATCAGCATTC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|20 : CA----TA--TATA-----T-------ATTA-------TC-A-GCAACCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TA-T--T-GG-A-AT--AAATAAATC-
gi|21 : GA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-TAAATC-T-ATata
gi|23 : -TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTGTac
gi|3 : ATAATAAATCAAGTT--TATTAATTGTT-TTTTTTTTTTTTTTTTATCTAAGCTTATACTA-TACGTATTATAATGTACTCAGTATGAACC-TGG-AAAACTATGTTTTGCACATTTGCAATC-TATCAAACATGGCATATTG----AGAGTAGTCAACCGAATAGCAACCGTCCCGCTGGTATCTTT--TTTGCACTACAGTGAAGTA-ATAAGC-TTACTTTTACTGTCCTTGCATTAGGAT-CA-G-GTGGTA-CATCATAAA----ATACA-------------------TCAAGACTGGTA-TAT--TGTTAAAGAATATCTCAATGTTATGTACATTA--TATCT-TA---TTATACCTATTGGTTTTTTGG-------T------GTATT-ACCTT-GTAAGACTGATGTTTGCACATTTAC--TCTTT-AATAACCATTGGCATTATTGAAG-TAGTA-CAAT-GC-CCGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA--ATA----TATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-GGTAA---------------CA-TACAT-A-AATACATGTCAAGTA---ATATATGTAATAAATGT---TC--A-TG--TATGT---TCTTTTAT-CTATA---AG-CTT-GATACT--AT-----TTTTATAATGTATTAC-T-TG-TATATTC--CTT----------------------GTAAT-------------------------A-----ATATCGTTTGCACATTT---TT------------------------C-------AT----GTTTT-------ATCACCATGCCTCATGTACTG------------TA-----CATTCGAA----T-AACCA-A-GTACT-TTC-TGGAT-----TTTT------TTAAT-ATTTTTTTTTATT-TT---------------ATTACTAC--------------TATTTGT-------AAA--CG-C---TTGT--TAAACTA-TTG-ACA----TA--TTTA-----T----T--ATCA-------------CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGG--CC-TATT--T-GG-A-AT--AAATg
gi|4 : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATAGCATGTTGAATTGGTACCAATAG-CACCGTCCATTGGTATCTTTTGCACT-GCAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGTT--AATTA--TG-T-TATTATTTT---TTTTATCTACGCTTATACTACTA-GTATCATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ATCGTTCCG-TGGTATC--T--TTTGCACTACAGTGAAGTAT-TAAGTATA--TCTTACTGT-CTTGCATTAGGATACACA-GTGGTACTAACATAAT----ATACA-------------------TCAAGACTTTTA-TATTATGTTAAA-AATATGTC-ATG-TATGTACATTAT-
gi|5 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaTACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT--ATCT-TA---TT-TA-CTATTGGTTTTGTG----------------TATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TACAT-A-AATACAT-TCAAGTA-T-AT-TATG-TAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-C-TAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAAA-C-------AT----GCCTC-------AT------------------GTAATG-------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTT----TT--------------------------------------------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCAAAGA-GGGCCCC-TATT--T-GG-A-AA--AAATAAATC-T--ATC-T-ATCTATaa
gi|6 : TACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTTG----------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTTAAATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGT-CCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TAC---ATAATACAT-TCAAGTA---ATATATG-TAAAAATGTC--TC--A-TG-TTATGT---TC--TTATACTATA---AG-CTTAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAA--C-------AT----GCCTC-------ATGTAAT-------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTT----TTTT---------------------------------------------------TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GGGCCCC-TATT--T--G-A-AT--AAATAAATC-T--ATC-T-ATCTATatattt
gi|7 : aACTAGTTTTATGAT------TTACTCTGTATTAACCTC-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAAC--A----TATATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-ATT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAACT--CTC----------------------GTAAA-------------------------A-----ATAT-G----------TTGGCA------------------------CATTTGCAAT----G--TTTATCAACAT------------------GCCTCATGTTATGTA-----CATT--GA----T-AACTACA-GTGCC-TTC-TGGATTTTT-TCCC------TTTATCA-------TTATCATT---------------ATCATTACTA------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----CA--TTT------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAGGA-GGGCCCC-TATT--T-GG-A-AT--AAATAATTC-T--ATA-T-ATCTAa
gi|9 : TACATCCTTT-A-TAA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-A----TATATA--TCTTACTG-TTTTACATTATGATACCA-CGGT-GTT-A---------------CA-TACATAAAAATACAT-TCAAGTA-GAAT-TATG-TAAAAATGTCTTTC--ATTG-TTATGT---TC-TTTAT-CTATA---A---CTAGA---T--AC--A--TTTTA-AATGTA-TAC-TCTGTTATAAT---CTT----------------------GTAAA-------------------------A-----AT-T-G----------T---TTGC----------------------C-------ATTTCAGT-TT-------ATCACCATGCCCTCAGTA--G------------TA-----CATT--GACATGT-AAACACGTGTTAT-TTC-TGG-TTTTTATTTA------TT--T-ATTTTTTTTTTTTAGT---------------TTTATTACTCA-----------TA-TTGT-------AAA--CA-TG--TGCT--AAACTTAGTTG---A----TA--TTTA-------------ATTA-------TCAA-GCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GGGCCCCATGTTACT-GATG-AT--AAATAAAT--T--ATCTT-ATCcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 1 222222 111 11 111 111 11 1 222222 22 1 1 1 22222 22 11111 1111 99999999999999999999 1 11 111 444444444444444 1111 1 222222222222222 111 33333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111 2222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222
lowQualScore : 88 7 2 7 7 3 3 0 0 222222 555 999 1 11 222 3 1 444 2 8 2 0 8 33 3 0 222222 55 0 0 6 0 2 00000 0 0 11 0 66666 3 8 0 8 1 2222 66666666666666666666 0 5 0 1 4 5 77 8 444 0 8 3 888888888888888 6 6 5 5 5 5 5 5 1 5 1 2222 6 0 4 1 4 4 4 4 555555555555555 4 8 6 4 111 8 9 55 55 4 4 777 4 8 777 4 55 44444 7 3 7 777 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88888 33333333 3 2 3 33 3 4444444444444444444444444444444444444444444444444444444444444444444444 2 9999999 33 2 33 33 2 4444 5555 33 4444444444444444 0 8888888 2 2 2 2 2 2 0 5 2 33 2 2 2 33 5 44 7 4
lowQualScore : .. . . . . . . . . ...... ... ... . .. ... . . ... . . . . . .. . . ...... .. . . . . . ..... . . .. . ..... . . . . . .... .................... . . . . . . .. . ... . . . ............... . . . . . . . . . . . .... . . . . . . . . ............... . . . . ... . . .. .. . . ... . . ... . .. ..... . . . ... ................................................................................................................................................................... ..... ........ . . . .. . ...................................................................... . ....... .. . .. .. . .... .... .. ................ . ....... . . . . . . . . . .. . . . .. . .. . .
lowQualScore : 33 3 0 3 3 3 3 0 0 222222 444 888 0 00 666 8 4 000 2 0 8 8 0 22 2 0 222222 00 0 0 5 0 5 66666 8 8 22 8 44444 2 0 8 0 4 1111 33333333333333333333 7 7 1 4 3 7 77 0 000 8 0 7 333333333333333 7 7 7 7 7 7 7 7 7 7 4 1111 5 2 4 0 0 0 0 0 000000000000000 0 0 0 0 222 0 0 55 55 0 0 000 0 0 000 0 55 22222 3 6 3 888 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33333 22222222 3 5 3 55 3 7777777777777777777777777777777777777777777777777777777777777777777777 9 3333333 99 9 99 99 7 1111 3333 44 8888888888888888 4 1111111 5 5 5 5 5 5 9 0 5 44 5 5 5 44 7 66 3 0
consensus : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTAT-ATTTTTTTTTNTTATT---------------ATTATTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
Reference ( family-1967 ) : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTAT-ATTTTTTTTTNTTATT---------------ATTATTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGAAAATAGCATGT-------TGAT-TGTTGAATTGGTACCAATAGGCACCGTCCCGTGGTATCTTTTGCACTGACAGTGAAGCATTTTTTGTTTTGTTGCATATTGATCACACGGTGGGTACCTAC--AAACTATAA-AAATCAAGTT---ATTA--TGTT-TTTTTTTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAAACTATG--TTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-T-GTATC-TT--TTTGCAATACAGTGAAGTA-ATAAGCATC--T-TTACTGT-CTTGCATTAGGATACACGTGTGGTACCAAC-TAAA----ATACAT--------------------AAGAATGGTA-TATTATGTTAAAGAATAT-TC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTT--TGGT------T------GTATTAACCTTGGTAAGACT-ATGTTTGCACA-TTACATCCTTT-AATAA-CA-TGGCA-TATTG-AG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATT--TTAC-G-TTTTGCA-TATG-TA-CA-CGGTAGGT-A---------------CATTACATAAAAATACAT-TCAAGTA-T-A--TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGCCTTAGATACT---C--GATTTTTATCATGTA-TACTTCTG-TATAAT---CTT----------------------GT-AA-------------------------A-----ATAT-G----------T---TTTGCACATTTTCCAATGTTTATCAAC-------AT----GCCTC-------AT------------------G------------TAATGTTAATTG-GA----T-AACCACA-GTACT-TTC-TGGATTTTT-TTTT------TTT----TTTTTTTT--------------------------------------------TA-TCGT-------AAA--GC-TG--TTGT--AAAACTA--TG-ACA----TA--TTGA-----T----T--A--A-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GAGCCCC-TATT--T-GG-ACAT--AAATAAATC-T--
gi|10 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaAAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TTTATTCTATA---A--CTTAGATACT--AT-----TTTTATAAT-TA-TA--TCTG-TATAATC--CTT----------------------GTAAATATTTTGGACTTTCCAAATTTTATCA-----ACAT-G--------------CT------------------------C-------AT----G--TA-------AT------------------G-------------A-----CATT--GAC---T-A--CACA-GTACTATTCATGGNNNNNNNNNNN------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-------ATTACTAC--------------TA-TTGT-------AAAAGCA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-A---TATTATGGCACAAGA--GGCCCC-TGTT--T-GG-A-AT--AAATAAAT
gi|11 : gttcatatgtgaaatattttataaagataataataATTAAGATA-CA-CGGT-GGT-A---------------CC-TACCT-ATA-TA----------A-T-AT-TATGTTAAAAATATG--TC--A-TG-TTATAT---TC-ATTGT-C--TA---AG-CTTA
gi|11 : ATTAAGAT-ACACGGTGG-TACCTACCTA---TATAAT--ATTATGTTAAAAATA--TGTCATGTTATATT---CATTGTCTAAGCTTATA-NNNNN-NNNNNNNNNNNNNNNNNNNNCGAGCCTTGA-Atannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|12 : --TTTTATAGTGTA---C-TCTGGTATAATC--CTTGTGAAACTATGTTTGCACATTTGCAAATTTATC-------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GT----T-AAAAACA-GTACC-TTC-TG-ATTTTT-TTTT------TTTATTATTTTTTATTATTATTATTATCATCATTATTATTACTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TATTTTTT-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCGAAGA-GGtcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|13 : GTATT-TTAGTGTGCATTAT-GTGT-GCATATA--------TCTGACTGT-TTTGCATTAGGATACACG-ATTATACT----TGAATTTGATAC-----------------------AGA--AGTATTATCATGCTCCA-AATGTCTC-ATGTTATGTTCCTTGT-T
gi|13 : ATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-TAT-A---------------CT-TGAAT-TTGATACA---GAAGTATT-AT-CATGCTCCAAATGTC--TC--A-TG-TTATGT---TC-CTTGT-TTAAACACAG---TACATTCTGGAC--GATTTTTGTTAAGTATTAC-TAT--TATAAACATGTT----------------------GTAAA-------------------------ACTATCATAT-G----------T---AT------------------------C-------AT----taaacacagtacattctggacgatttttgttaagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|13 : gtattttagtgtgcattatgtgtgcAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TT-----CCTT--GT----TTAAACACA-GTACA-TTC-TGGACG--------------------ATTTTT----GTTA-----------------AGTATTAC--------------TA-TTAT-------AAA--CA-TG--TTGT--AAAACTA-T----CA----TA--T--------G----T--ATCA-------TC-A-ACAATCGTG-TAATG-TACTGT-GCCCAAGcaacaatcgtgtaatgtactgtgcccaag
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaTACATGCT--GC--A--TTTGATGATGCA-GAA----G-TATCATC--ATG----------------------CTCCA-------------------------A-----AT---G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TG-----CAT--------------------------TC-TGGATTTTT-------------TAA-AA-----------ATT---------------ATTATTAC--------------TA-TTAT-------AAA--CA-TGTTTTGT---AAACTA-T----CA----TA--ATTA-----TATGGT--ATGA-------TC-ATGCAATCA---C-ATG-TGCCAT-GCCCAAGAGGGGCCCC-TATT--T-GG---AT--ACACAAATC-
gi|15 : cT-G----------C---CT------------------------C----------------TC-------AT------------------A------------GA-----CATT--G----------CACA-ATACC-TTC-TGGATTTCT---------------------------TTTATT---------------ACTATTAC--------------TG-T-AT-------AAA--CAGTG--TTGT--AAAACTG-T----CC----TA--TGTA-----T----T--AT----------C-A-GCAATCATG-T-ATG-TTCTAT---TCAAGA-GGATCCT-TATT--T-GG-A-AT--AAATAAATCAT--ATC-a
gi|16 : TTAAT---------------AGTATTAC--------------TA-TTGT--------AC--CA-TG--TTGTAAAAAACTA-TTGAACATTTTTA--TTTA-----T----TAAACTA-------TC-A-GC-ATCATGAT-ATG-TATTAT-G-CCAAGACGCACCTA-TATT--TAAG-G-ATGAAAAT-AATC-T--ATC-TCATCTAT
gi|17 : aTTTTTGGTGATT---------------ATTAGTAT--------------TA-ATAT-------AGA--CA-TG--TTGT--AAAAATA-T----CA----TA--T----------------------------------------G-T-GTG-CATTAT-GCTCAAGA-GGACCAC-TGTT--T-GG-A-AT--AAATAAATCAT--ATCAT-ATCcta
gi|18 : cggg-TTG-ACA----TA--TTTA-----T---------TA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-atgtact
gi|19 : ttcattgcaagtttattcgtacatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-ACATGTACATAAAGTACA-TACAT-ATGATACAT-TCAAATA-T-AT-TAT
gi|2 : TATGACAGA--TGTGAAACATATGCACA-AAATAACATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCGCGTGGTATCTTTTGCACT-ACAGTGAAGCATATTTTACTGTTTTGCTTTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAGGTT--TAGTA--TGT----TAATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATG------GTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATTGCATATTGTTCAA-AGTAGT--ACC-AATAGC-ACCGT-CCG-TGGTATC--T--TTAGCACTACAGTGAAGTAT-TAAGCATT--TCTTACGGT-CTTGCATTAGGATACACG-GTGATACCAACATAAA----ATACAT------------------CCAAGACTGGTA-TATTATGTTAAA-AATATATC-ATGTTATGTACATCATGTATCTATAAGCTAATA-CTACTAGTTTTATGATTTACTCT------GTATTAACCTT-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-A---------------CA-CACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTGTT---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAATA--CTT----------------------GTAAA-------------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACC-TTC-TGGATTTTTATTTTCCCCCCTTTAN-NNNNNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNNNNNNNATA-TTATACTATTGAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTATCAGTT----T--ATTATCAGCATTC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|20 : CA----TA--TATA-----T-------ATTA-------TC-A-GCAACCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TA-T--T-GG-A-AT--AAATAAATC-
gi|21 : GA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-TAAATC-T-ATata
gi|23 : -TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTGTac
gi|3 : ATAATAAATCAAGTT--TATTAATTGTT-TTTTTTTTTTTTTTTTATCTAAGCTTATACTA-TACGTATTATAATGTACTCAGTATGAACC-TGG-AAAACTATGTTTTGCACATTTGCAATC-TATCAAACATGGCATATTG----AGAGTAGTCAACCGAATAGCAACCGTCCCGCTGGTATCTTT--TTTGCACTACAGTGAAGTA-ATAAGC-TTACTTTTACTGTCCTTGCATTAGGAT-CA-G-GTGGTA-CATCATAAA----ATACA-------------------TCAAGACTGGTA-TAT--TGTTAAAGAATATCTCAATGTTATGTACATTA--TATCT-TA---TTATACCTATTGGTTTTTTGG-------T------GTATT-ACCTT-GTAAGACTGATGTTTGCACATTTAC--TCTTT-AATAACCATTGGCATTATTGAAG-TAGTA-CAAT-GC-CCGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA--ATA----TATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-GGTAA---------------CA-TACAT-A-AATACATGTCAAGTA---ATATATGTAATAAATGT---TC--A-TG--TATGT---TCTTTTAT-CTATA---AG-CTT-GATACT--AT-----TTTTATAATGTATTAC-T-TG-TATATTC--CTT----------------------GTAAT-------------------------A-----ATATCGTTTGCACATTT---TT------------------------C-------AT----GTTTT-------ATCACCATGCCTCATGTACTG------------TA-----CATTCGAA----T-AACCA-A-GTACT-TTC-TGGAT-----TTTT------TTAAT-ATTTTTTTTTATT-TT---------------ATTACTAC--------------TATTTGT-------AAA--CG-C---TTGT--TAAACTA-TTG-ACA----TA--TTTA-----T----T--ATCA-------------CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGG--CC-TATT--T-GG-A-AT--AAATg
gi|4 : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATAGCATGTTGAATTGGTACCAATAG-CACCGTCCATTGGTATCTTTTGCACT-GCAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGTT--AATTA--TG-T-TATTATTTT---TTTTATCTACGCTTATACTACTA-GTATCATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ATCGTTCCG-TGGTATC--T--TTTGCACTACAGTGAAGTAT-TAAGTATA--TCTTACTGT-CTTGCATTAGGATACACA-GTGGTACTAACATAAT----ATACA-------------------TCAAGACTTTTA-TATTATGTTAAA-AATATGTC-ATG-TATGTACATTAT-
gi|5 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaTACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT--ATCT-TA---TT-TA-CTATTGGTTTTGTG----------------TATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TACAT-A-AATACAT-TCAAGTA-T-AT-TATG-TAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-C-TAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAAA-C-------AT----GCCTC-------AT------------------GTAATG-------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTT----TT--------------------------------------------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCAAAGA-GGGCCCC-TATT--T-GG-A-AA--AAATAAATC-T--ATC-T-ATCTATaa
gi|6 : TACCAACATAAA----ATACATCAAGACTGGTATATTACATCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTTG----------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTTAAATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGT-CCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TAC---ATAATACAT-TCAAGTA---ATATATG-TAAAAATGTC--TC--A-TG-TTATGT---TC--TTATACTATA---AG-CTTAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAA--C-------AT----GCCTC-------ATGTAAT-------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTT----TTTT---------------------------------------------------TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GGGCCCC-TATT--T--G-A-AT--AAATAAATC-T--ATC-T-ATCTATatattt
gi|7 : aACTAGTTTTATGAT------TTACTCTGTATTAACCTC-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAAC--A----TATATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-ATT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAACT--CTC----------------------GTAAA-------------------------A-----ATAT-G----------TTGGCA------------------------CATTTGCAAT----G--TTTATCAACAT------------------GCCTCATGTTATGTA-----CATT--GA----T-AACTACA-GTGCC-TTC-TGGATTTTT-TCCC------TTTATCA-------TTATCATT---------------ATCATTACTA------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----CA--TTT------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAGGA-GGGCCCC-TATT--T-GG-A-AT--AAATAATTC-T--ATA-T-ATCTAa
gi|9 : TACATCCTTT-A-TAA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-A----TATATA--TCTTACTG-TTTTACATTATGATACCA-CGGT-GTT-A---------------CA-TACATAAAAATACAT-TCAAGTA-GAAT-TATG-TAAAAATGTCTTTC--ATTG-TTATGT---TC-TTTAT-CTATA---A---CTAGA---T--AC--A--TTTTA-AATGTA-TAC-TCTGTTATAAT---CTT----------------------GTAAA-------------------------A-----AT-T-G----------T---TTGC----------------------C-------ATTTCAGT-TT-------ATCACCATGCCCTCAGTA--G------------TA-----CATT--GACATGT-AAACACGTGTTAT-TTC-TGG-TTTTTATTTA------TT--T-ATTTTTTTTTTTTAGT---------------TTTATTACTCA-----------TA-TTGT-------AAA--CA-TG--TGCT--AAACTTAGTTG---A----TA--TTTA-------------ATTA-------TCAA-GCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GGGCCCCATGTTACT-GATG-AT--AAATAAAT--T--ATCTT-ATCcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
blockSeqs : . A G A A . . . . CTA TAC AAA A AT TCA G A TTT N C N . TT T A TTCAA CA G A C C G TTAG TA TTAC C C . A TTTG TCAAGACTGGTATATTACAT T G C A TG A AGC C A ATTTACTCT . G A C T T A T T A T CATG T T T A C T . A CATGTACATAAAGTA . A T G TT A T TT CA T G CTT T T CAC . GG GAT T . G CAT GTAATAATATCGTTTGCACATTTTTCATGTTTTATCACCATGCCTCATGTACTG . GACATG T A T TA A ATTTTCCCCCCTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA T ACTATTG AG G TT AA G TGAA TTTT TT TTATCAGTTT TCAGCAT A T A A T G G A AC A T . GA A AA A .
blockSeqs : . A . A A . . . . A TAA T G . TT T A . C . T . T T . AG . . . T . G TTT T ATT C . . A . TCAAGACTGGTATATTACAT . G A . T . . . T ATTTACTCT . . . . . . . . C . T . T T . G . . . . . . . T . GA A C . . . . . . A . . . TAG T . T C GTAAAAATATGTTTGCACATTTTCAATGTTTATCAAACATGCCTCATGTAATG . CGAA . A . C . TTTTTTTATTATTTTTTATTATTATTATTATCATCATTATTATTACTAC . . . . . . . TGA . . TTATATGGT . . . . . . . C . . . . . . A . T .
blockSeqs : . . A TAC T T . T A T . C . T . T . . A . . . . . G T A ATA T . . A . TC . G C . T . . . G GT . . . . . . . . C . T . T T . G . . . . . . . T . T . T . . . . . . . . . . TAG . . . C GTAAAAATATGTTTGCACATTTTCAATGTTTATCAACATGCCTCATGTAATG . GAC . C . A . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTACTAC . . . . . . . TGA . . TTATTAA . . . . . . . . . . . . . . . . . .
blockSeqs : T A T . T . A . . . . . T T . C . . A . T . . G . T . . . G T . . . . . . . . T . T . T A . G . . . . . . . T . T . T . . . . . . . . . . A . . . C GTAAAAATATGTTGGCACATTTGCAATGTTTATCAACATGCCTCATGTTATG . GT . C . C . ATTTATTTATTTTTTTTTTTTAGTTTTATTACTCA . . . . . . . TGA . . TTTTT . . . . . . . . . . . . . . . . . .
blockSeqs : A . T . . C . . A . . . . . . . . . C . . . T T . T . . . . . . . T . T . T . . . . . . . . . . A . . . A GTGAAACTATGTTTGCACATTTGCAAATTTATCAACATGCCTCATGTTATG . GT . C . C . TTTTTTAATATTTTTTTTTATTTTATTACTAC . . . . . . . TGA . . GTATT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . . . . . . T . . . . . . . T . T . . . . . . . . . . . . . . . . C GTAAATATTTTGGACTTTCCAAATTTTATCAACATGCTCATGTAATG . GA . C . T . TCCCTTTATCATTATCATTATCATTACTA . . . . . . . TGA . . TTATT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . T . . . . . . . A . T . . . . . . . . . . . . . . . . C GTAAAAATTGTTTGCCATTTCAGTTTATCACCATGCCCTCAGTAG . GA . C . T . ATTTTTGTTAAGTATTAC . . . . . . . TGA . . TTAT . . . . . . . . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . . . . . . . . . . . . . . . . . C GTAAAAACATGCCTCATGTTATG . GA . A . T . TAAAAATTATTATTAC . . . . . . . TGA . . ATAT . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . T CTCCAAATGTCTCATGTTATG . GA . . . C . TTTATTACTATTAC . . . . . . . TGA . . TTTT . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . G . . . T . ATTTTTTTTTTT . . . . . . . TG . . TTA . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . ATTTTTTTTT . . . . . . . . . . TT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . GT . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . TT . . . . . . . . . . . . . . .
blockSeqs : . . . . TT . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqCons : TAC T** T** T**** TCT***************** T* GT************* A**** C** ***** GA****** TTATT***********
originalCons : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATANATCAAGTT--NATTA--TGTT-TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC-TT--TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACAT------------------TCAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT------T------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTAT-ATTTTTTTTTNTTATT---------------ATTATTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
finalCons : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTTTTGCACT-ACAGTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGTTT--ATTA--TGT--TNTTATTTT---TTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATCT----TTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAA----ATACATCT-----------------CAAGACTGGTA-TATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGGT-------------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--ACA----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATTGA------T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTAT-ATTTTTTTTTNTTATT---------------ATTATTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTATT-----------ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT
Alignments
lowQualScore : 11111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1111 1 1 111111 111 1111 11 1 222222 22 1 1 1 22 33 111 1 1 11111111111111111111 222 111 5555555555555555555 1111 1 222222222222222 111 33333 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11111111 2222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222
lowQualScore : 88 7 2 7 7 3 4444 0 0 2 4 1 8 8 666666 2 6 777 99 99 11 1 7777 8 2 8 2 0 8 33 3 0 222222 55 0 0 6 0 2 33 11 3 555 6 0 3 2 0 00000000000000000000 6 6 6 333 8 444 0 8 1111111111111111111 6 6 5 5 5 5 5 5 1 5 1 2222 6 0 4 1 4 4 4 4 555555555555555 4 8 6 4 111 8 9 55 55 4 4 777 4 8 777 4 55 44444 7 3 7 777 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 88888 33333333 3 2 3 33 3 4444444444444444444444444444444444444444444444444444444444444444444444 2 9999999 33 2 33 33 2 4444 5555 33 4444444444444444 0 8888888 2 2 2 2 2 2 0 5 2 33 2 2 2 33 5 44 7 4
lowQualScore : .. . . . . . .... . . . . . . . ...... . . ... .. .. .. . .... . . . . . . .. . . ...... .. . . . . . .. .. . ... . . . . . .................... . . . ... . ... . . ................... . . . . . . . . . . . .... . . . . . . . . ............... . . . . ... . . .. .. . . ... . . ... . .. ..... . . . ... ................................................................................................................................................................... ..... ........ . . . .. . ...................................................................... . ....... .. . .. .. . .... .... .. ................ . ....... . . . . . . . . . .. . . . .. . .. . .
lowQualScore : 33 3 0 3 3 3 8888 0 0 5 0 0 0 0 000000 5 7 000 22 22 88 4 0000 0 2 0 8 8 0 22 2 0 222222 00 0 0 5 0 5 88 00 2 000 5 0 2 5 0 55555555555555555555 7 7 7 000 0 000 8 0 3333333333333333333 7 7 7 7 7 7 7 7 7 7 4 1111 5 2 4 0 0 0 0 0 000000000000000 0 0 0 0 222 0 0 55 55 0 0 000 0 0 000 0 55 77777 3 6 3 888 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 33333 22222222 3 5 3 55 3 7777777777777777777777777777777777777777777777777777777777777777777777 9 3333333 99 9 99 99 7 1111 3333 44 8888888888888888 4 1111111 5 5 5 5 5 5 9 0 5 44 5 5 5 44 7 66 3 0
consensus : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTT--T-TGCACT-ACG-GTGAAGCATNTTTTACTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGT-T--TATTA--TGT--TNTTATTTT----TTTT-ATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATCT-TTTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAAATACATC-----------------TCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGG-------T-------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--G--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTAT-ATTTTTTTTTNTTATT---------------ATTATTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
Reference ( family-1967 ) : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCCCGTGGTATCTT--T-TGCACT-ACA-GTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGT-T--TATTA--TGT--TNTTATTTT----TTTT-ATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-TGGTATC--TTTTGCACTACAGTGAAGTATATAAGCATT--TCTTACTGT-CTTGCATTAGGATACACG-GTGGTACCAACATAAAATACATC-----------------TCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT-TATCT-TA---TTATA-CTATTGGTTTTGTGG-------T-------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATATATTTCTTACTG-TTTTGCATTANGATA-CA-CGGT-GGT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--AC--A--TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTTAT-ATTTTTTTTTNTTATT---------------ATTATTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTA-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|1 : TATGACAGGAGTGTGAA-CATATGTACGAAAATAGCATGT-------TGAT-TGTTGAATTGGTACCAATAGGCACCGTCCCGTGGTATCTT--T-TGCACTGACA-GTGAAGCATTTTTTGTTTTGTTGCATATTGATCACACGGTGGGTACCTAC--AAACTATAA-AAATCAAGT-T---ATTA--TGT--TTTTTTTTT----TTTTTATCTAAGCTTATACTACTA-GTATTATAATGTACTCAGTATGAACCTTGGAAAAACTATG--TTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGTC-ACC-AATAGC-ACCGTCCCG-T-GTATCT-TTTTGCAATACAGTGAAGTA-ATAAGCATC--T-TTACTGT-CTTGCATTAGGATACACGTGTGGTACCAAC-TAAAATACAT--------------------AAGAATGGTATATTATGTTAAAGAATAT-TC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTTG-GT-------T-------GTATTAACCTTGGTAAGACT-ATGTTTGCACA-TTACATCCTTT-AATAA-CA-TGGCA-TATTG-AG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATAAATT--TTAC-G-TTTTGCA-TATG-TA-CA-CGGTAGGT-A---------------CATTACATAAAAATACAT-TCAAGTA-T-A--TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AGCCTTAGATACT--CG--AT-TTTTATCATGTA-TACTTCTG-TATAAT---CTT----------------------GT-AA-------------------------A-----ATAT-G----------T---TTTGCACATTTTCCAATGTTTATCAAC-------AT----GCCTC-------AT------------------G------------TAATGTTAATTG-GA----T-AACCACA-GTACT-TTC-TGGATTTTT-TTTT------TTT----TTTTTTTT--------------------------------------------TA-TCGT-------AAA--GC-TG--TTGT--AAAACTA--TG-ACA----TA--TTGA-----T----T--A--A-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GAGCCCC-TATT--T-GG-ACAT--AAATAAATC-T--
gi|10 : ggaatccctagacatttaaggtttgcacaattgtttcttctggtaaattggtgatgaaattcatttaatatttgaatgtccaaattattactcacttagacagaacatgtatgaaattataaaacaacacttttgaacatttttctatgtttgataacatgaataaattgatatgggctactcaattgtgaaaatactgacatacttgagccctttgtaatttgtataaacgaggcaatatgaaccaAAAAATGTC--TTCAA-TGGTTA-GTCTTTC-TTTATTCTATA---A--CTTAGATACT--AT-----TTTTATAAT-TA-TA--TCTG-TATAATC--CTT----------------------GTAAATATTTTGGACTTTCCAAATTTTATCA-----ACAT-G--------------CT------------------------C-------AT----G--TA-------AT------------------G-------------A-----CATT--GAC---T-A--CACA-GTACTATTCATGGNNNNNNNNNNN------NNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-------ATTACTAC--------------TA-TTGT-------AAAAGCA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-A---TATTATGGCACAAGA--GGCCCC-TGTT--T-GG-A-AT--AAATAAAT
gi|11 : gttcatatgtgaaatattttataaagataataataATTAAGATA-CA-CGGT-GGT-A---------------CC-TACCT-ATA-TA----------A-T-AT-TATGTTAAAAATATG--TC--A-TG-TTATAT---TC-ATTGT-C--TA---AG-CTTA
gi|11 : ATTAAGAT-ACACGGTGG-TACCTACCTA---TATAAT--ATTATGT-TAAAAATA--TGTCATGTTATATT----CATT-GTCTAAGCTTATA-NNNNN-NNNNNNNNNNNNNNNNNNNNCGAGCCTTGA-Atannnnnnnnnnnnnnnnnnnnnnnnncgagccttgaatcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|12 : --TTTTATAGTGTA---C-TCTGGTATAATC--CTTGTGAAACTATGTTTGCACATTTGCAAATTTATC-------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GT----T-AAAAACA-GTACC-TTC-TG-ATTTTT-TTTT------TTTATTATTTTTTATTATTATTATTATCATCATTATTATTACTAC--------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TATTTTTT-----T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCGAAGA-GGtcttttaccatagcttgataaacataatcaaaccgataaagagaaatcattcagtgtctatttctgtgttttatattattttagataatctaatttttatttgactttataaattactttacatttcctttaccgggcaaacatgtgagccacatgcttccgcggtggttcataggaagggctacgc
gi|13 : GTATTTTAGTGTGCATT-ATGTGTGCA-TATATCTGACTGTTTTGCATTAGGAT-ACACGATTA-TACTTGA--A---TTTGATACA-GAAGTAT--TATCA--TGC--T
gi|13 : ATATATCTGACTG-TTTTGCATTAGGATA-CA-CGAT-TAT-A---------------CT-TGAAT-TTGATACA---GAAGTATT-AT-CATGCTCCAAATGTC--TC--A-TG-TTATGT---TC-CTTGT-TTAAACACAG---TACATTCTGGAC--GATTTTTGTTAAGTATTAC-TAT--TATAAACATGTT----------------------GTAAA-------------------------ACTATCATAT-G----------T---AT------------------------C-------AT----ccaaatgtctcatgttatgttccttgtttaaacacagtacattctggacgatttttgttaagtattactattataaacatgttgtaaaactatcatatgtatcatcaacaatcgtgtaatgtactgtgcccaag
gi|13 : gtattttagtgtgcattatgtgtgcAT-G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TT-----CCTT--GT----TTAAACACA-GTACA-TTC-TGGACG--------------------ATTTTT----GTTA-----------------AGTATTAC--------------TA-TTAT-------AAA--CA-TG--TTGT--AAAACTA-T----CA----TA--T--------G----T--ATCA-------TC-A-ACAATCGTG-TAATG-TACTGT-GCCCAAGcaacaatcgtgtaatgtactgtgcccaag
gi|14 : gtattttagtgtgcattatgtgtgcatatatctgactgttttgcattaggatacacgattatacttgaatttgatacagaagtattatcatgctccaaTACATGCT--GC--A--TTTGATGATGCA-GAA----G-TATCATC--ATG----------------------CTCCA-------------------------A-----AT---G----------T---CT------------------------C-------AT----G--TT-------AT------------------G------------TG-----CAT--------------------------TC-TGGATTTTT-------------TAA-AA-----------ATT---------------ATTATTAC--------------TA-TTAT-------AAA--CA-TGTTTTGT---AAACTA-T----CA----TA--ATTA-----TATGGT--ATGA-------TC-ATGCAATCA---C-ATG-TGCCAT-GCCCAAGAGGGGCCCC-TATT--T-GG---AT--ACACAAATC-
gi|15 : cT-G----------C---CT------------------------C----------------TC-------AT------------------A------------GA-----CATT--G----------CACA-ATACC-TTC-TGGATTTCT---------------------------TTTATT---------------ACTATTAC--------------TG-T-AT-------AAA--CAGTG--TTGT--AAAACTG-T----CC----TA--TGTA-----T----T--AT----------C-A-GCAATCATG-T-ATG-TTCTAT---TCAAGA-GGATCCT-TATT--T-GG-A-AT--AAATAAATCAT--ATC-a
gi|16 : TTAAT---------------AGTATTAC--------------TA-TTGT--------AC--CA-TG--TTGTAAAAAACTA-TTGAACATTTTTA--TTTA-----T----TAAACTA-------TC-A-GC-ATCATGAT-ATG-TATTAT-G-CCAAGACGCACCTA-TATT--TAAG-G-ATGAAAAT-AATC-T--ATC-TCATCTAT
gi|17 : aTTTTTGGTGATT---------------ATTAGTAT--------------TA-ATAT-------AGA--CA-TG--TTGT--AAAAATA-T----CA----TA--T----------------------------------------G-T-GTG-CATTAT-GCTCAAGA-GGACCAC-TGTT--T-GG-A-AT--AAATAAATCAT--ATCAT-ATCcta
gi|18 : cggg-TTG-ACA----TA--TTTA-----T---------TA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-atgtact
gi|19 : ttcattgcaagtttattcgtacatTTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-ACATGTACATAAAGTACA-TACAT-ATGATACAT-TCAAATA-T-AT-TAT
gi|2 : TATGACAGA--TGTGAAACATATGCACA-AAATAACATGTATAAACATGACATGTTGAATTGGTACCAATAG-CACCGTCGCGTGGTATCTT--T-TGCACT-ACA-GTGAAGCATATTTTACTGTTTTGCTTTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAGGT-T--TAGTA--TGT--TA--ATTTT----TTTT-ATCTAAGCTTATACTACTA-GTATTATAATG------GTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATTGCATATTGTTCAA-AGTAGT--ACC-AATAGC-ACCGT-CCG-TGGTATC--TTTAGCACTACAGTGAAGTAT-TAAGCATT--TCTTACGGT-CTTGCATTAGGATACACG-GTGATACCAACATAAAATACATC------------------CAAGACTGGTATATTATGTTAAA-AATATATC-ATGTTATGTACATCATGTATCTATAAGCTAATA-CTACTAGTTTTATGATTTACTCT-------GTATTAACCTT-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCAACGTCCCGTGGTA-TCTTTTGCATT-ACAGTTAAACATACATGTATATATTTCTTACTG-TTTTGCATTAGGATA-CA-CGGT-GGT-A---------------CA-CACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTGTT---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAATA--CTT----------------------GTAAA-------------------------A-----ACAT-G----------C---CT------------------------C-------AT----G--TT-------AT------------------G------------TA-----CATT--GA----T-AACCACA-GTACC-TTC-TGGATTTTTATTTTCCCCCCTTTAN-NNNNNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNNNNNNNATA-TTATACTATTGAAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--TTTATCAGTT----T--ATTATCAGCATTC-A-GCAATCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTAT
gi|20 : CA----TA--TATA-----T-------ATTA-------TC-A-GCAACCATG-T-ATG-TATTAT-GCCCAAGA-GGGCCCC-TA-T--T-GG-A-AT--AAATAAATC-
gi|21 : GA-GGGCCCC-TATT--T-GG-A-AT--AAATAAATC-TAAATC-T-ATata
gi|23 : -TATT--T-GG-A-AT--AAATAAATC-T--ATC-T-ATCTGTac
gi|3 : ATAATAAATCAAGT-T--TATTAATTGT--TTTTTTTTTTTTTTTTT-ATCTAAGCTTATACTA-TACGTATTATAATGTACTCAGTATGAACC-TGG-AAAACTATGTTTTGCACATTTGCAATC-TATCAAACATGGCATATTG----AGAGTAGTCAACCGAATAGCAACCGTCCCGCTGGTATCTTTTTTGCACTACAGTGAAGTA-ATAAGC-TTACTTTTACTGTCCTTGCATTAGGAT-CA-G-GTGGTA-CATCATAAAATACA-------------------TCAAGACTGGTATAT--TGTTAAAGAATATCTCAATGTTATGTACATTA--TATCT-TA---TTATACCTATTGGTTTTTTGG-------T-------GTATT-ACCTT-GTAAGACTGATGTTTGCACATTTAC--TCTTT-AATAACCATTGGCATTATTGAAG-TAGTA-CAAT-GC-CCGTTTCGTGGTA-TCTTTTGCACT-ACAGTGAA--ATA----TATATAATTCTTACTGTTTTTGCATTATGATA-CATCGGT-GGTAA---------------CA-TACAT-A-AATACATGTCAAGTA---ATATATGTAATAAATGT---TC--A-TG--TATGT---TCTTTTAT-CTATA---AG-CTT-GATACT--AT-----TTTTATAATGTATTAC-T-TG-TATATTC--CTT----------------------GTAAT-------------------------A-----ATATCGTTTGCACATTT---TT------------------------C-------AT----GTTTT-------ATCACCATGCCTCATGTACTG------------TA-----CATTCGAA----T-AACCA-A-GTACT-TTC-TGGAT-----TTTT------TTAAT-ATTTTTTTTTATT-TT---------------ATTACTAC--------------TATTTGT-------AAA--CG-C---TTGT--TAAACTA-TTG-ACA----TA--TTTA-----T----T--ATCA-------------CAATCATG-T-ATG-TATTAT-GCCCAAGA-GGG--CC-TATT--T-GG-A-AT--AAATg
gi|4 : TATGACAGA--TGTGAAACATATGTACGGAAATAGCATGTATAAACATAGCATGTTGAATTGGTACCAATAG-CACCGTCCATTGGTATCTT--T-TGCACT-GCA-GTGAAGCATTTTTTATTGTTTTGCATTATGAT-ACACGGTGG-TACCTAC--A---TATAATACATCAAGT-T--AATTA--TGT--TATTATTTT----TTTT-ATCTACGCTTATACTACTA-GTATCATAATGTACTCAGTATGAACCTTGG-AAAACTATG-TTTGCACATTTGCAATCTTATC-AACATGGCATATTG----A-AGTAGT--ACC-AATAGC-ATCGTTCCG-TGGTATC--TTTTGCACTACAGTGAAGTAT-TAAGTATA--TCTTACTGT-CTTGCATTAGGATACACA-GTGGTACTAACATAATATACA-------------------TCAAGACTTTTATATTATGTTAAA-AATATGTC-ATG-TATGTACATTAT-
gi|5 : ggaatccctacacatttaagagtttgcacaaattgttcttctggtgaaattggggatgaaagtcatctaatatttgaatgtccaaattattactcacttagacagaacatgtatggaattataaatcaacactttgaacatttttctagtcttcataacatgaataaattaatatggctactcaattgtgaaaatactgacatacttgcagccatttgtaataaaagaagcaatatgaaccaTACCAACATAAAATACATCAAGACTGGTATATTACATCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTAT--ATCT-TA---TT-TA-CTATTGGTTTTGTG-----------------TATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTT-AATAA-CA-TGGCA-TATTGAAGATAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCA-T-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TACAT-A-AATACAT-TCAAGTA-T-AT-TATG-TAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-C-TAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAAA-C-------AT----GCCTC-------AT------------------GTAATG-------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTT----TT--------------------------------------------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCAAAGA-GGGCCCC-TATT--T-GG-A-AA--AAATAAATC-T--ATC-T-ATCTATaa
gi|6 : TACCAACATAAAATACATCAAGACTGGTATATTACATCAAGACTGGTATATTATGTTAAAGAATATCTC-ATGTTATGTACATTA--TATCT-TA---TTATA-CTATTGGTTTT---G-------T-------GTATTAACCTT-GTAAGACT-ATGTTTGCACATTTACATCCTTTAAATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGT-CCGTGGTA-TCTTTTGCACT-ACAGTGAAACATA----TATA-A-TTCTTACTG-TTTTGCATTATGATA-CA-CGGT-GGT-A---------------CA-TAC---ATAATACAT-TCAAGTA---ATATATG-TAAAAATGTC--TC--A-TG-TTATGT---TC--TTATACTATA---AG-CTTAGATACT--AT-----TTTTATAATGTA-TAC-TCTG-TATAATC--CTT----------------------GTAAA-------------------------A-----ATAT-G----------T---TTGCACATTTTCAATGTTTATCAA--C-------AT----GCCTC-------ATGTAAT-------------G------------TA-----CATT--GA----T-AACCACA-GTACT-TTC-TGGATTTTTATTTT------TTT----TTTT---------------------------------------------------TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----TA--T--------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-G-CCAAGA-GGGCCCC-TATT--T--G-A-AT--AAATAAATC-T--ATC-T-ATCTATatattt
gi|7 : aACTAGTTTTATGA-------TTTACTCTGTATTAACCTC-GTAAAACT-ATGTTTGCACATTTGCATCCTTT-AATAA-CA-TGGCA-TATTGAAG-TAGTACCAATAGCACCGTCCCGTGGTA-TCTTTTGCATT-ACAGTGAAAC--A----TATATATTTCTTACTG-TTTTACCTTAGGATA-TA-CGGT-ATT-A---------------CA-TACAT-ATAATACAT-TCAAGTA-T-AT-TATGTTAAAAATGTC--TC--A-TG-TTATGT---TC-TTTAT-CTATA---AG-CTTAGATACT--ACTAG--TTTTATAATGTA-TAC-TCTG-TATAACT--CTC----------------------GTAAA-------------------------A-----ATAT-G----------TTGGCA------------------------CATTTGCAAT----G--TTTATCAACAT------------------GCCTCATGTTATGTA-----CATT--GA----T-AACTACA-GTGCC-TTC-TGGATTTTT-TCCC------TTTATCA-------TTATCATT---------------ATCATTACTA------------TA-TTGT-------AAA--CA-TG--TTGT--AAAACTA-TTG-ACA----CA--TTT------T----T--ATTA-------TC-A-GCAATCATG-T-ATG-TATTAT-GCCCAGGA-GGGCCCC-TATT--T-GG-A-AT--AAATAATTC-T--ATA-T-ATCTAa
gi|9 : TACATCCTTT-A-TAA-CA-TGGCA-TAT-GAAG-TA-TACCAATAGCACCGTCCCGTGGTATTCTTTTGCACTAACAGTGAAACA-A----TATATA--TCTTACTG-TTTTACATTATGATACCA-CGGT-GTT-A---------------CA-TACATAAAAATACAT-TCAAGTA-GAAT-TATG-TAAAAATGTCTTTC--ATTG-TTATGT---TC-TTTAT-CTATA---A---CTAGA---T--AC--A--TTTTA-AATGTA-TAC-TCTGTTATAAT---CTT----------------------GTAAA-------------------------A-----AT-T-G----------T---TTGC----------------------C-------ATTTCAGT-TT-------ATCACCATGCCCTCAGTA--G------------TA-----CATT--GACATGT-AAACACGTGTTAT-TTC-TGG-TTTTTATTTA------TT--T-ATTTTTTTTTTTTAGT---------------TTTATTACTCA-----------TA-TTGT-------AAA--CA-TG--TGCT--AAACTTAGTTG---A----TA--TTTA-------------ATTA-------TCAA-GCAAT-ATG-T-ATGTTATTAT-GCC--AGA-GGGCCCCATGTTACT-GATG-AT--AAATAAAT--T--ATCTT-ATCcctacggtttttatatatagttttacctcgtgtactggtgatctgattttgagtgaatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ACAACCTTTTATCAGTGTACATGTAATTTCTAAGAAAAGATGCAAGAAAGTTGTTTTATTGCCACCACTATTGAAAGAATGGGGGCACATCACGAAGTTTACAAGATGATCAGGAAATATCGTAAATTTGTATGTAAAAGCTAACTTAACGAACTTTTACCACCTGCACATACGTAAGAAAATACTTACAAGATTACGTACATCAGCGCACTGTGTGCAATAGACGCAGGTGTTACATCGGGATCTAGTACATTTAGAGATTGGCACAAATTGTTATGTCTGGTGAAATTGGTGAGTTTCATCTAATTTTGAATGTCCAAATATCTGCCTCTCGACTCCAGACCAGAACGAGTATGAATCATAAAACGAGAACATCTTGAACATTTTTTCTAGTCGGTTGATAACATCGAATAAATTATATGGCTACTCAATTGTGAAAATACTGAGCGAATACTTGCAGCCCTTTCTGTAAT
Unaligned ( gi|22 ): TCGTACTAATGATGATTTATATATATAATTAT