lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111111111 1111111 111 11111 1 3333333333 333333333333333333 1 11111 33333333 1 1 2222 33 444444444444444444444444444444444444444444444444444444444444444444444444444 1 3333333 22 2 22222 2 7777777777777777777777777777777777 2 333333333 44444 2 2 2 2 2 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 333 2 5555 2 55555 333 4 1 2 666666666666666666666 2 9999999999 333 6666666 3333333333 1 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 44 11 2 33333333 2 2 555 333 2 333333333333333 22222 222 55555555555555 22222 33333333 1 1 111 3333333 1111111111 1 44444444 111 222 1 22222 1 1 1 11 1 222 1 1 1 44444 1111 1 1 22222222 1 2222222222222 1 22 22222 11 222 1 11 2 6666666666666666666666666666666666666666666666666666666666666 1 22 1 22 1 1 2 1 222 33333 11 1 222 4444444444444444444444444444 1 11 1 1 1 1 222 1 333333333 1
lowQualScore : 6 5 5 5 66 5 55555555555 4 8888888 4 4 4 7777 888 4 88888 66 88 3 0000000000 6 666666666666666666 66 0 5 44444 5 5 5 77 66666666 6 5 3 7 3 2222 11 111111111111111111111111111111111111111111111111111111111111111111111111111 5 0000000 77 3 0 88888 0 1111111111111111111111111111111111 0 888888888 66666 0 0 4 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 555 2 0 3 4 3333 0 00000 555 2 0 5 0 88 333333333333333333333 0 1111111111 3 555 1111111 7777777777 5 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 88 444 77 66 0 00000000 0 4 0 555 555 0 4 2 4 777777777777777 77777 111 2 33333333333333 4 44444 77777777 3 0 111 2222222 7777777777 4 0 3 2 2 22222222 0 666 3 9 111 0 99999 555 0 0 3 88 3 111 3 6 3 99999 6666 3 3 1 77777777 3 3 7777777777777 3 00 33333 88 555 8 3 88 0 2222222222222222222222222222222222222222222222222222222222222 2 00 3 00 3 5 3 3 0 000 11111 88 3 111 1111111111111111111111111111 3 88 3 3 3 3 555 3 777777777 3 3
lowQualScore : . . . . .. . ........... . ....... . . . .... ... . ..... .. .. . .......... . .................. .. . . ..... . . . .. ........ . . . . . .... .. ........................................................................... . ....... .. . . ..... . .................................. . ......... ..... . . . . . . ....................................................................................................... ... . . . . .... . ..... ... . . . . .. ..................... . .......... . ... ....... .......... . ................................................................................................................ .. ... .. .. . ........ . . . ... ... . . . . ............... ..... ... . .............. . ..... ........ . . ... ....... .......... . . . . . ........ . ... . . ... . ..... ... . . . .. . ... . . . ..... .... . . . ........ . . ............. . .. ..... .. ... . . .. . ............................................................. . .. . .. . . . . . ... ..... .. . ... ............................ . .. . . . . ... . ......... . .
lowQualScore : 0 7 7 0 11 0 99999999999 4 9999999 4 4 4 0000 999 0 55555 99 22 4 9999999999 2 999999999999999999 99 5 0 55555 0 0 0 99 22222222 4 0 2 3 3 7777 77 000000000000000000000000000000000000000000000000000000000000000000000000000 5 0000000 55 0 0 55555 0 5555555555555555555555555555555555 0 555555555 00000 0 0 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 5 0 0 0 0000 0 00000 000 5 0 0 0 00 000000000000000000000 0 0000000000 0 000 0000000 5555555555 5 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 00 000 55 55 0 00000000 0 0 0 000 000 0 0 5 0 000000000000000 00000 000 5 55555555555555 7 77777 00000000 3 0 000 5555555 8888888888 2 0 2 5 5 22222222 8 222 2 0 555 0 00000 222 0 0 3 33 3 333 3 0 3 00000 7777 3 3 0 33333333 3 7 3333333333333 3 77 33333 33 777 3 3 33 0 8888888888888888888888888888888888888888888888888888888888888 0 00 3 77 3 0 3 3 7 333 00000 33 3 333 0000000000000000000000000000 3 33 3 3 3 3 777 3 333333333 3 0
consensus : NTAGTATGTAT-C-TAA-AG-C-AAT-----CCT---GA-TTCAA-------TATA-TGCT-G-C--A-ATCTCA--AAAATNTA----CC--AAA-GCAGCTAAAACTT-------NT-TTTTAAAA------------------AAGCAA--TTT-AATCTGG-CAACA-C-CTGC-ATAA--CCCAATC-ATATA-TACATCTACCAGTATTA-CT--A-AGGGTGTG-CAATAATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGTA-GCAAATGTTTNACGCAATTAACTTACTTGNGCAGAGGTAAANGAAAATATTCCGGAGGTCCACGGAAATGCGTGNGTNGNTCNNAACTAGACTTCATGCTGATGTTCACATATACCGANTGATCTCATAGGTATCTAAATTATCTATTTAANTGTTGCTTAAAGATGAAATATACAGTGT-GTTCAACTTCATCGATTACATGGTATTGCTTCACAATGCTCAGCTGAAAACTTAAGTAATTTCGAGTTCCAACTNNCGACGAGATATCCTAACAGTAATCCAGTTCTTNCTAACAANCNAAAAAATCGTCCTTATACATTTCAGCCGCGCAAATTTTTCGNAAATAG-AGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAANNAAAAATGGTGCGCAGGAGTGATTTACATGGTATACTAAGGAATGTCTNGTAAGTTGGTTTGTTAATTGTCCTTTGTGAGATCTANACTTATAAATATGGTTATAATCAGTTTTGGGGAATGCGCTCCGCGGTAGTAGTGTGTAGTCCAGTGTATTAANATTAGTTTTTCACATCANAAAAAGAGGTAGCACGTGTAAAGCCGTTTNATGAAANNATAAANCGGANGATGATCAGTAGCNTTTTCGAGGAATANACCATTAACGTAGTNTCAGTATANTCACATTTTGGCACATAGAANGNANATTCGTCTAAAAAGAACGAAAGAAAGAAGAAAAAAACCTGCCCAAAGTNTCTGCCCTGAAGTCT-GGAGAAANTGAAAG-T-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTAGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAANAGTAAGTTGAT-GGTTAAC-A-TATTCTGCATATAACNTCCGTA-TTTAG-TT-GAAAATAA--CTAT-TTGAATAA-CGATAAGA-TTTGTACTT-TTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATN---ACC-GAATGTATNTCTTCAAAA--AGCC-GGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTTGGT-TTT--TGATTTGTTTTATTGGGTTTGGGTTNTTTACTTGAATTTTTGGGTGGTGGGGGTNGGGGG-----------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATAT-CCGCCTTGTTCTT-GCTTT-TACTCTTTCTCGATAAGC-TTCTGT---TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--AT-AAAAATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-G---TG--CTCCC-TAAGACNATTT
Reference ( gi|3 ) : CTGGTATGTAT-C-TAA-AG-C-AAT-----CCT---GA-TTCAA-------TATA-TGCT-G-C--A-ATCTCT--AAAATTTA----TC--AAA-GCAGCTATAACTT-------GT-TTTTAAAA------------------AAGCAA--TAT-AATCTTG-CTACA-C-CTGC-ATAA--CCCAATC-GTATAGTACATGTACCAGTATTA-CT--A-AGGGTGT--CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--T-----TTTCACTTA--TAACTTA-TT-TGCAGA--TAAATG-AAATA-TC--GAGGTCT-CGGAAATGT-T-AGTTACTCATA-TTAGA-TTCAT----ATGTTCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGTAGTTTAACTT--TC-ATTACATGGTTTTGC-TCA-AATTGTCAG-TGAAAA-TT-AGTAA-TTCGA--TTC-AC-CACG------------AAC-----TCCAG---TTCTTAAC-AACAAAAAAAT-GTCCTT-TACATTTCA-----GCAA---TTTCGCAAATAGCAGCCCCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATT-GAAAAAAAAAATGGT-C-CAGGAATG--TTACATG-TATA-----GA---TCTAGTA---TGGTTT-----T-ATCTTTTGT---ATC-AAACTTATAAATATG--TATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTA--CCAG-GTAT--ATAT-A--TTTTCACATCA-------------CACGTG-----CT-TTTTA---AAAAATAAAACTGA--ATAATCAGTAGTCTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA---ACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGAACGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCTGGAAGAAAATGAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAAAAAAAAAGTAAGTTGAT-GGTTAAC-AATATTCTGCATATAACATCCATA-TTTAG-TT-GAAAATAA--CTAT-TTGAATAA-TGATAAGA-TTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATTT--ATG---ACC-GAATGTATCTCTTCAAAAATAGCT-GGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTAGGT-TTT--TG-TTTGTTT------GTTTGA---TTTTA---------TTGGG----------GGGGGG-----------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--ATTTCAGCTCGTA--ATCTGGCCA-TCTAAGGGTA---ACAGAGTAATCCAAAATAAA-ATTAAAAATTTT-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A---TG--CTCCC-TAAGACAATTT
gi|15 : TAGTATGTAT-C-TAA-AG-C-AAT-----CCT---GA-TTCAA-------TATAATGCT-G-C--A-ATCTCA--AAAATTTA----TC--AAA-GCAGCTA---------------------AAA------------------AAGCAA--TTT-AATCTTG-CAACA-C-CTGC-ATAA--CCCAATC-ATATAGTACATGTATCAGTATTA-CT--A-AGGGTGT--CA
gi|11 : acagcaaatatctactcaTAGTATGTAT-C-TAA-AA-C-AAT-----CGT---GA-TTCAA-------TATA-TGCC-G-C--A-ATCTCA--AAAATATA----CC--AAA-GCAGCTAAAACTT-------CT-TTTTAAAA------------------AAGCAA--TTT-AATCTGG-CAACA-C-CTGC-ATAA--CCCAATG-ATA---TATATCTACGAGTAT
gi|13 : aactgagtttgccatgtatgtaccagtatgtgtttcttctgtcagaccgcaaaatcaactcaTAGTATGTAT-C-TAA-AA-C-AAT-----CCC---GA-TTCAA-------TATA-TGTT-G-C--A-ATCTCA--AAAATAAA----CC--AAA-GCAGCTAAAACTT-------TT-TTTT--TA------------------AATCAA--TTT-AATCTGG-CAACA-C-CTGC-ATA
gi|10 : acaactgagtttgtcctgcatataccagtatgtatctcagtgttctgtcacacagcaaaatctactcctacaaatgTAGTATGTAT-CATAA-AA-C-AAT-----CGTA--GA-TTCAA-------TATA-TGCC-G-CAGA-ATCTCA--AAAATATA-----C--AA---CAGCTAAAACTT-------CT-TTTT-AAA------------------AAGCAACTTTT-AATCTGG-CAACA-C-CTGG-ATAA--CCCAAT--ATATA-TA-ATCTA-CAGTA
gi|8 : agctgagtttcactgtaaattaccagtatgtgttttcttctgtatcagaccgcaaaatcacactcaTAGTATGTAT-T-TAA-AA-C-AATTTACACATGTAGA-TTTAA-------TATG-TGCT-G-C--A-ATCTCC--GAAATACACCGTCC--AAA-GCAGCTAAAACTT--------C-TTTTAAAATCCAAAACAATTATTTATAAGTAA--TTT-AATCTGG-CATCA-T-CTGC-ATAA--CCCTATC-
gi|2 : caactgagtttgtcctgtatgtaccagtatgcatctcttctgtcagacagcaaaatcaacacatacatgGTATGCATTC-TAATAG-C-AAT-----CCT---GA-TTCAAA------TATA-TGCTTG-C--ACATCTCT--TTTTTTTA----TC--AAAAGCAGCTATAACTTA------GT-TCTTAAAA------------------A-GCA---TAT-AATCTTGACTACA-C-CTGCCATAAAACCCAATCCGT----TATATTTACGAGTAT-A-CT--ACAGGGTGTA-CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT-----TTTCACGT---TAACTTACTT-TG-AGA--TAAATG-AAATA-TCCGGAGGTCT-CGGAAATGTGTGAGTAGCTTTTAACTAGACTTCAT----A-GTTCAC-TAT---GAAT--TCTCAT---T-TCT-AATTATCTA-TTAATT-TTGCTTAAA-ATGAAA-ATACA-T-T-GTTTAACTTCATCGATTACATGGTATTGCTTCACAATGCTCAGCTGAAAACTT-AGTAATTTCGAGTTCC-ACTCTCG------------AAC-----TCCAG---TTACTAACAAACTAAAAAATCG--CTT-TACATTTCA-----GCAA---TTTCGC
gi|14 : tGTATGTAT-C-TAA-AT-CAAAT-----CCA---GATTTCAATCACATGTATA-TGCT-GCC--A-ATGTTTCAAAAACTTA----CC--AA-------TAAACCTTCCTTTGGGTGTTTTAAAA------------------AAGCAA--TTTCAATCTGA---ACA-CGCTGC-ATAA--CCACATC-ATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaatttacatggtataatctagtatggtttttatcttttgtatcatcttataaatatggtatatttttgatccttcgcgaatgtgtaatccagtatattaatatatttttatcatcacgtgcctttaaaattataaaacggatgataatcagtagcgttttcgaggaatatctatacgagtattagtatacacattttgcatagaaagcaaacgtctaaaaaacgaaagaaaaaaaaaaaactgcccaaagtttttgaaagtgtattctcaaaaattcatttttgtagagcatctgtgacagttgtagtttgtgctaatcatagtttaacacttgggtttgaaaaaaaagtaagttgatggttaacaaatattctgcatataacatccatatttagtttggaactaactatattgaataactgaatagatttgtattttcattattttgtccagcggccggcggttatcttaatagataccggaatgtaatttttggcatcaaagaagagacgtattcctgttgtttgtttagtttttgtgtttgttttattgggtttgggttttttacttgaatttttgggtggtgggggtggggggtgtcttggtgctccgttttctctatctccgctttcgtttcttcaaatatcccgccttgtccttgcttttaccctttttctgtcatacttctcaactcgtaatctggccactctagggtaacattccaaaataagcataaaacaatttgctgagaatggtggtattactcaatgaagatgagaagagttcagttaccgatttgcttcctataaccattttta
gi|1 : tgtcagacagcaaacatatataacactcatcaA-AGTC-AAT-----C-T---GA-TTCAA-------TATA-TGCT-G-C----ATCTC---AAAATTAA----ACCAAAA-GCAGCTATAACTT-------GT-TTTTATAA------------------CAGCTA--TAT-AA----A-CTACATC-CTGC-ATAA--CACAATT--CAGAAGACAT-TACCACTATTATCTAAA-AGAGTGTGACAATAATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGTA--CAAATGTTTAATTCAATTAAC-TA-TTGGGCAGAGGTAAAGGAAAATATTC--GAGGTCCACGGAAATGC-T-TATTAATCAAA-T--GA-TTCATGCTGATA-TCACATATACCGATTGATCTCATAGGTATCTAAATTATCTATTTAAATGTTGCTTAAAGATGAAATATACAGTGT-GTTC--TTT--TCGATTA-ATA---------CA-AA-----AA--AAAAA-TTAAGTAA-TTCGAG-TTCAAC-GACGACGAGATATCCTAACAGTAATCCAGTTCTTCTTAAC-ACCAAAAAAAT--TCCTTATACATTTCAGCCGCGCAAATTTTTCGGAAATAG-AGCCGCC
gi|18 : aatagT---GA-TTCAA-------TATA-TGCT-G-C--A-ATCTCgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttattatatttgaaaataaaaatggtgcgcaggagtgatttacatgtatactaaggaatgtttcgtaagttggtttgttaatgttctttgtgagatctaaacttaaaatatggttataatcagttttggggaatgcgttccgtggtagtagtggtagccagtgttagattagtttttcacatcaaaaaaagaggtagtacgtgtaaagctgttttatgaaaaaataaacttgagatgatcagtagctttttcaggaataaatcattaacgtagtttcatatagtcacattttagcacatgaatgaatattcgtaaagacgaagaagaaaaaaacctgcccaaagtgtctgccctgaagtctggaagaaatggaaaggtcttttcaaaaattattttgtgtgagcacttgtgacattaaattttggtgtaatatagttgacttgggtttgaacaaaaaataagttgattggttaacatattgtgcatatacattcatatttagtttgaaaatgaatctatttgaataatataagaatttgtactattttttaatgtcatgttttccagcggaccggacggtatttattaccgtatgtatctcttcaaaataagcttggcatgatgaagacgttgtctttgttgttaggtgttttgatttgtttgtttggatttattaggtgggggttgttgcttctctatctccctttcttcttcaagatatccgccttgttcttgctttatactccttctcgataagcttctgtaaatttcagctcgtgatatctggccatctaggtacagagtaatcaaaataacattaaaaattttgcttgagatggtcgttacccaagaatgaaagagattgttactgataatctcccataaga
gi|1 : cttctgttagacagcaaactctactcttagaaTTATATTTGAAAATAAAAATGGTGCGCAGGAGTGATTTACATG-TATACTAAGGAATGTTTCGTAAGTTGGTTTGTTAAT-GTTCTTTGTGAGATCTAAACTTA-AAATATGGTTATAATCAGTTTTGGGGAATGCGTTCCGTGGTAGTAGTG-GTAG-CCAGTGT-T--AGATTAGTTTTTCACATCAAAAAAAGAGGTAGTACGTGTAAAGCTGTTTTATGAAAAAATAAACTTGAG-ATGATCAGTAGCTTTTTC-AGGAATAAATCATTAACGTAGTTTCA-TATAGTCACATTTTAGCACAT-GAATGAATATTCGT----AAAGA-CGAA-----GAAGAAAAAAACCTGCCCAAAGTGTCTGCCCTGAAGTCTGGAAGAAATGGAAAGGTCTTTTCAA--A--A--ATT-ATTTTGTG-T-GAG-------CACTTGTGACA--T-TAAATTTTGGTG-TAAT-ATAGT--------TGAC--TTGGGTTTGAACAAAAAA-TAAGTTGATTGGTTAAC-A-TATTGTGCATATA-CATTCATA-TTTAG-TTTGAAAATGAATCTAT-TTGAATAA-T-ATAAGAATTTGTACTATTTTTTAATGTCATG-TTTT-----CCAGCGGACCGGACGG-TATTT--ATT---ACC-GTATGTATCTCTTCAAAATAAGCTTGGCAT-GATGAA--GACGT-TGTCT--TTGTT---GTTAGGTGTTT--TGATTTGTTT------GTTTGG---ATTTA---------TTAGG----------TGGGGG-----------TT-GTTGCTTCTCTATCTCC-CTTTC--TTCTTCAAGATAT-CCGCCTTGTTCTT-GCTTTATACTCCTTCTCGATAAGC-TTCTGTAAATTTCAGCTCGTGATATCTGGCCA-TCTA--GGT----ACAGAGTAAT-CAAAATAAC-ATTAAAAATTTT-GCTTGAGATGGTCG--TTAC-CCA-AGA-ATGA-AAGA-GATT-GTTACTGA---TAATCTCCCATAAGA
gi|2 : aatagaagtcaatctgattcaatatatgctgcatctcaaaattaaaccaaaagcagctataacttgtttttataacagctatataaactacatcctgcataacacaattcagaagacattaccactattatctaaaagagtgtgacaataatttttggtcttcgtgcacactctacgtagcaaacacaaccgtcaaaacatagtacaaatgtttaattcaattaactattgggcagaggtaaaggaaaatattcgaggtccacggaaatgcttattaatcaaatgattcatgctgatatcacatataccgattgatctcataggtatctaaattatctatttaaatgttgcttaaagatgaaatatacagtgtgttcttttcgattaatacaaaaaaaaaattaagtaattcgagttcaacgacgacgagatatcctaacagtaatccagttcttcttaacaccaaaaaaattccttatacatttcagccgcgcaaatttttcggaaatagagccgccgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttaTATATT-GAAATAA----T--T-C-CAG-AAT---TTACATGGTATA------A---TCTAGTA---TGGTTT-----TTATCTTTTGT---ATC-AT-CTTATAAATATGG-TATA-T---TTTTG----AT-C-CTTCGCG-----AATGTGTAATCCAGTATATTAATAT-A--TTTTTA--TCAT------------CACGTG-----CC-TTTAA---AATTATAAAACGGATGATAATCAGTAGCGTTTTCGAGGAATAT-CTAT--ACG-AGTATTAGTATAC--ACATTTTG---CATAGAAAGCAAA--CGTCTAAAAA--ACGAAAGAAAAAAAAAAAA---CTGCCCAAAGTTTTTG----------------AAAGTGTA-----TTCTCAA--A--A--ATTCATTTT-TG-TAGAG-------CATCTGTGACAGTTGTA---GTTTGTGCTAATCATAGTT-------TAACACTTGGGTTTG-AAAAAAAAGTAAGTTGAT-GGTTAACAAATATTCTGCATATAACATCCATA-TTTAGTTT-GGAACTAA--CTATATTGAATAACTGAATAGA-TTTGTATTT----------TCATTATTTTG---TCCAGCGG-CCGG-CGGTTATCTTAATAGATACCGGAATGTAATTTT-----------T-GGCATCAAAGAAGAGACGTAT-TCCTGTTGTTT--GTTTAGT-TTTTGTG-TTTGTTTTATTGGGTTTGGGTTTTTTACTTGAATTTTTGGGTGGTGGGGGTGGGGGGTGTCTTGGTGCTCCGTT--TTCTCTATCTCCGCTTTCGTTTCTTCAA-ATATCCCGCCTTGTCCTT-GCTTT-TACCCTTTTTCTGTCA---TACT-----TCTCAACTCGTA--ATCTGGCCACTCT-AGGGTA---ACA---T--TCCAAAATAAGCATAAAACAATTT-GCTGAGAATGGTGGTATTACTCAATGAAGATGAGAAGAGT-TCAGTTACC-GATTTG--CTTCC-TATAACCATTT
gi|5 : tgtatgcattctaatagcaatcctgattcaaatatatgcttgcacatctcttttttttatcaaaagcagctataacttagttcttaaaaagcatataatcttgactacacctgccataaaacccaatccgttatatttacgagtatactacagggtgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttcacgttaacttactttgagataaatgaaatatccggaggtctcggaaatgtgtgagtagcttttaactagacttcatagttcactatgaattctcatttctaattatctattaattttgcttaaaatgaaaatacattgtttaacttcatcgattacatggtattgcttcacaatgctcagctgaaaacttagtaatttcgagttccactctcgaactccagttactaacaaactaaaaaatcgctttacatttcagcaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttaAGTCTCAGAGAAAATGAAAGTT-TTTTTTATTATTATTATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTAGTG-TAATCATAGTACATTGTATAAC--TTGGGTTTGAACGACAT-GTAAGTTGAT-GGTTAAC-A-T-TTCTGCATATAATTTCCGTA-TTTAG-TT-GAAAATAA--CTAT-TTGAATAA-CAATAAGA-TTTGTACTTATTTTTAATGTCTTT-TTTTTTTCTCCAG-----CGG-CGG-TATCT--ATG---ACT-GAATGAATATCTTCAAAAATAGTC-GGCAT-GAAGAA-AGAC---T-TCT--TTTTTTTAATTTGGT-CTT--tta
gi|16 : TTTT-TGAT-GAGTACAGCCCACTTGTGAC---TATG---TTTAGTA-CA--CATG--A-------TCA-----GGAATTGAACAAAAC-GTATCTTGAT-GCTTAAC-A--ATTCTGCATAGAATTTCTGTATTTTAG-Tctctatgtccctttcttttttcaaatatgccgccttgttcttggctttgactctttctcgataagctttctgtctttcagctcgtaatctggccatctaatgatatgttcagagtaatcaatttcggcttgaaatgttcgttaccaagaaatgaaagattcgttaccatgctccctaagacaattg
gi|5 : tttttatttgtttattttctat-----------TTTGGT-CTTCTCTATGTCC-CTTTC-TTTTTTCAA-ATATGCCGCCTTGTTCTTGGCTTT-GACTCTTTCTCGATAAGCTTTCTGT--CTTTCAGCTCGTA--ATCTGGCCA-TCTAATGATATGTTCAGAGTAATC----------------AATTTCGGCTTGAAATGTTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A---TG--CTCCC-TAAGACAATTatttccgta
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): GTGGAACCAAGAAACTGCCCTTTCCACTTTTTTCTGACAACTTTACACTTTCCAGTATATATCATTTCCCCCTACAAACTATAGTATTTTCATCCGCAATTCACAAGCGCTTGGGTCTATAACTACAAAGGAGAATTTGAAGTATGGATTCTTGTTTTTGATGGCTGATTTGGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGAATGAGCCTTCTGGCTTTCGTACAAATCGAAGTAGTTTCAGATAAAACTTGGACGAGAGTTTCAGATAGCACATTAGTTTTTTTTAATTAGAGTAAATACGTGTCAAAAAATTGCAGTTTAATCTTAATTGATAATTATTTTTGTTTAAAAATAAAATGAAGGTGGCAGCATACGATGGCCGGTTACCCCAAGTGCCTTTGATTTAAAAAAAATTATTAAGCCCTACCTGCTACAGATAAAGAGTGAAATCATTCAGCATTTTTCTTCTTTCGACCAAATATCTGTTTCTTTTCTTCTTTCTTTTTTTTCTATTTAAAATCTAATCTTATTTGACTTTAAATCATTTAATTTTTTTTTTTTTTTTACCGCAAAACGATATGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTA
Unaligned ( gi|6 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAATCGAAGTGTTCAGATAAATCTTTGACTGAGAGTTCGATAGTTCTTCATTAGTTTTTTTAAATTAGAGTTAATACGTGTCAAAAAATTGCCGTTATCTAATTGATAATTATTTGTTTAAACAATAAATGAAGGTGGCAGCATACGAGTCCGTCTTACCCCAAGTGCCTTCATTTACAAAAATTTTTTTCAAACTGGGAATCATTCAGCTTTTCGACCAATATCTGTTTCTTTTCTTCTTTTTTTTTTTATGACTTTAAGTTTTAATTTTTTTTTTTTTTTTACCGCAACACGATATGGAAGCACTGCTTCCGTTGTTCATAGGAGCTAGCGCC
Unaligned ( gi|7 ): TATAGTTTCAGATAAAACCTGGACAGAGTTCAGAAGCACAATAGTTGTTATAACTAGAGTAAATACGTGTCAAAAAAATTGCAGTTAATCTGAATTATTTTTTGTTTAAAATATAATGAAGGGGGCGGCATACGATGACCGGTCTTACCCCAAGTGCCTTTGATTAAACAAAAAAAGATTTATATACATGTAGGCCTACCTGCTACAGATAAAGATGAAATCATTTAGCATTTTCAACCAAATTCTTTTTTTTCTACTTAAAATCTAATTTTATTTGACATTAAATCATTTATTTTATTTTTTTTTTTTTACCGCAAAACGATGTGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTACGCCAC
Unaligned ( gi|9 ): GAAGGGACGGGATACGATGTCCGTACTTACCGCCATGTACCTTTGCAAATTTAAATAGAATTTGATAAACATGATGAAATCATCAGCATTTATAATATAGTTATTTAAAATCTAAATTCTAGTTGACTTTAAAATTATTTTCTTCTTTTAAGCGCAACAATGTCATGACATGTGGAAGGTCACATGCTATCCGTGCTTTATATGATAGGCTACGCCA
Unaligned ( gi|12 ): ACTAGAATAAATACGTGTAAAATAATTGCTGTTACTCTAATTGATGATCATTTTTGTTTTGAAAAAAAATATCAAGGGGCGGAATGCAATGTCCGATCTTACTCCATGTTATTGTGCCTTTGATTTTAGATAGATTATTGGTAAACATATTTGCACATGCTTCCGTGCTTCATAGAAAGATAACATATAACAGATTTTTA
Unaligned ( gi|17 ): CCTTTGATTTAAATAAAAAATTTACATATATTTACACACATGCTACAGATTAAGATGAAATCAT
Unaligned ( gi|19 ): TTTCTATTATGGTGCAGTATGTTTGTAAATGCATTATAATTCTTG
Unaligned ( gi|20 ): ATAATTATTGAATGTCTAGCGTTGAACATTTAATAGCACT
Unaligned ( gi|21 ): GAGAACACGCACGACTCGAAAGGTAAACTTGCAAATCT
Unaligned ( gi|22 ): TGTATGTACTAGTATGTATCTCTTCTGTCAGACAG
Alignments
lowQualScore : 111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111 111111111111111111111111111111111111
lowQualScore : 11111 111 1111111 333333333333333333333333 1 1 1111 22 7777777 3333 1 33 11 2 4444 22 33333 3333333 44444444 2 444444444 55555 2 2 2 2 2 22222 33 2222222222 22222222 22 333333333333333333333333333333 11 1 222 2 222222 11 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 222 2 7777777777 333 55555555 333 2 111 555555555555555555555 4444 22 33333333333 1111111111111111111111111111111111 2 2 222 33 2 2 33 333 2 22 22 1111 222222 222 22222222 1 2222222 111 111 33333333 11 11 11 22 222 11 2222 1 1 1 11 1111 1 4444444444 1 1 1111 1 11 1 22 000000000000000000000000000000000000 111 1 3333333333333 1 11 1 3 2 1 1 11 2 333 11 1 2 2222 44444444444 22 11 1 1 1 1 111 1 222 11 1
lowQualScore : 5 5 4 4 4 11111 3 111 4 4 3333333 4 4 99 4 55 1 9999 8 2 999999999999999999999999 66 4 555 4 4 4 66 5 0 3 5 9 1 3 0 4444 55 4444444 1 3333 7 2 33 00 1 3 0000 44 00000 222 22 0000000 11111111 3 000000000 11111 3 3 1 3 3 3 55555 88 00 6 6 0000000000 6 77777777 3 22 7 7 6 444444444444444444444444444444 7 77 7 4 1 999 3 888888 88 1 0 2 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 22 000 7 3 4444444444 1 777 88888888 0 777 3 88 7 999 999999999999999999999 4444 0 7 77 7 77777777777 6 5555555555555555555555555555555555 22 1 6 7 0 1 3 222 00 3 1 0 3 44 777 3 1 1 1 22 6 22 7 0 7 1 8888 333333 1 3 444 99999999 0 8 8 8 6666666 111 3 444 2 8 0 22222222 11 5 11 6 6 99 2 7 1 6 6 8 8 11 0 88 11 22 8 111 3 22 1111 2 0 0 0 33 8888 0 1 2 6666666666 0 3 0 2 4444 0 3 33 4 0 55 555555555555555555555555555555555555 111 6 0 6666666666666 0 33 0 0 0 0 0 33 3 0 3 777 33 0 3 0 0000 2 3 55 66666666666 00 33 0 0 0 0 777 0 777 33 0 1
lowQualScore : . . . . . ..... . ... . . ....... . . .. . .. . .... . . ........................ .. . ... . . . .. . . . . . . . . .... .. ....... . .... . . .. .. . . .... .. ..... ... .. ....... ........ . ......... ..... . . . . . . ..... .. .. . . .......... . ........ . .. . . . .............................. . .. . . . ... . ...... .. . . . ................................................................................................................................................ . .. ... . . .......... . ... ........ . ... . .. . ... ..................... .... . . .. . ........... . .................................. .. . . . . . . ... .. . . . . .. ... . . . . .. . .. . . . . .... ...... . . ... ........ . . . . ....... ... . ... . . . ........ .. . .. . . .. . . . . . . . .. . .. .. .. . ... . .. .... . . . . .. .... . . . .......... . . . . .... . . .. . . .. .................................... ... . . ............. . .. . . . . . .. . . . ... .. . . . .... . . .. ........... .. .. . . . . ... . ... .. . .
lowQualScore : 0 0 4 4 4 11111 9 000 0 0 0000000 0 0 55 0 55 0 4444 9 6 666666666666666666666666 11 4 777 4 4 4 99 0 1 3 2 3 0 2 0 8888 33 3333333 0 0000 3 0 77 33 0 7 7777 33 33333 777 00 0000000 33333333 7 333333333 77777 7 7 0 3 3 7 33333 00 33 7 7 7777777777 7 77777777 7 77 3 3 7 000000000000000000000000000000 3 77 3 0 0 000 7 000000 55 0 0 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 00 000 3 3 3333333333 0 333 33333333 7 000 7 33 3 000 000000000000000000000 0000 7 3 33 3 77777777777 7 7777777777777777777777777777777777 00 0 7 0 7 0 3 000 77 7 0 7 3 00 000 7 0 0 0 77 7 00 3 7 3 0 7777 555555 0 2 555 88888888 0 0 0 0 0000000 888 2 000 2 0 8 00000000 00 0 66 7 7 22 5 3 0 7 7 0 0 00 8 88 22 00 0 000 2 88 2222 5 0 0 0 88 5555 0 0 5 0000000000 0 2 0 5 8888 0 2 88 0 0 77 333333333333333333333333333333333333 333 7 0 2222222222222 0 22 0 0 0 0 0 88 2 0 2 555 88 0 2 0 8888 5 2 00 22222222222 55 88 0 0 0 0 000 0 555 88 0 0
consensus : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATCT-GGCAACA-C-CTGC-ATAA--CCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAATAATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGTA----GT-TTTCACTCA-TTAACTTACTTG--CAGAGGTAAATGAAA-TATCC--GAGGTCT-CGGAAATGC-T-AGTTACTCATA-CTAGA-TTCATG---ATGTTCAC-TAT---GATT--TCTCAT---T-TCTAA-TTATCTATT-AAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TTGCT-CACAAT--TCAG-TGAAAANTT-AGTAATTTCGAGTTCC-AC--ACGACGA--------AAC-----TCCAGTTCTT-CTAACAA-CAAAAAAAT-GTCCTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA--GTCTAGTA---TGGTTT-----TTATCTTTTGT---ATC-AAACTTATAAATATGGT-TATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGTATTAATAT-AGTTTTTCACATCA-------------CACGTG-----CC-TTTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAATA-ATCAT--ACG-AGTATTA-TATA--CACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAG-ACGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GG-A-GAAAATGAAAGG-TTTTTCAAA-----A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAAAGTAAGTTGA-TGGTTAAC-A--TATTCTGCATATAACNTCCGTA-TTTAG-TT-GAAA-ATAA--CTAT-TTGAATAAC-GATAAG-ATTTGTACT-TATTTTTAATGTCATTTTTT----TCCAGCGG-CCGG-CGGT-ATCT--ATG---ACCG-AATGTATCTCTTCAAA--AATAGC-CGGCAT-GAAGAA-AGACGT--T-TCT-TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT-TTA-----ATTTT---GTGGTGGGGGT-GGGGGT-TC-----GNTC----TTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTC-G--ATAAGCTTTCTGTA--TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
Reference ( family-1929 ) : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTNTTTT--------TAAAA-----------AAGCAA--TTT-AATCT-GGCAACA-C-CTGC-ATAA--CCCAAT-CATATA-TACATCTACCAGTATTA-CTA-A--GGGTGTG-CAATAATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGTAGCAAATGTTTNACGCAATTAACTTACTTGNGCAGAGGTAAANGAAAATATTCCGGAGGTCCACGGAAATGCGTGNGTNGNTCNNAACTAGACTTCATGCTGATGTTCACATATACCGANTGATCTCATAGGTATCTAAATTATCTATTTAANTGTTGCTTAAAGATGAAATATACAGTGT-GTTCAACTTCATCGATTACATGGTATTGCTTCACAATGCTCAGCTGAAAACTTAAGTAATTTCGAGTTCCAACTNNCGACGAGATATCCTAACAGTAATCCAGTTCTTNCTAACAANCNAAAAAATCGTCCTTATACATTTCAGCCGCGCAAATTTTTCGNAAATAG-AGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAANNAAAAATGGTGCGCAGGAGTGATTTACATGGTATACTAAGGAATGTCTNGTAAGTTGGTTTGTTAATTGTCCTTTGTGAGATCTANACTTATAAATATGGT-TATAATCAGTTTTGGGGAATGCGCTCCGCGGTAGTAGTGTGTAGTCCAGTGTATTAANATTAGTTTTTCACATCANAAAAAGAGGTAGCACGTGTAAAGCCGTTTNATGAAANNATAAANCGGANGATGATCAGTAGCNTTTTCGAGGAATANACCATTAACGTAGTNTCAGTATANTCACATTTTGGCACATAGAANGNANATTCGTCTAAAAAGAACGAAAGAAAGAAGAAAAAAACCTGCCCAAAGTNTCTGCCCTGAAGTCT-GG-A-GAAANTGAAAG--TTTTTCAAA-----A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTAGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAANAGTAAGTTGA-TGGTTAAC-A--TATTCTGCATATAACNTCCGTA-TTTAG-TT-GAAA-ATAA--CTAT-TTGAATAAC-GATAAG-ATTTGTACT-T-TTTTTAATGTCATTTTTT----TCCAGCGG-CCGG-CGGT-ATCT--ATN---ACCG-AATGTATNTCTTCAAA--A--AGC-CGGCAT-GAAGAA-AGACGT--T-TCT-TTGTTT--GTTTGGT-TTTTG-ATTTGTTTTATTGGGTTTGGGTTNTTTACTTGAATTTTTGGGTGGTGGGGGTNGGGGGT-TC-----GTTC----TTCTCTATCTCC-CTTTC-TTTCTTCAA-ATAT-CCGCCTTGTTCTT-GCTTT-TACTCTTTCTC-G--ATAAGC-TTCTGT---TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCG---TG--CTCCC-TAAGACNATTT
gi|1 : A-AGTCAA-T-----C-T---GATT-CAA-T-------ATA-TGCT-GC--A--T--CTCAAAATTAAA----CCAAAAGCAGCTATAACTTGTTTT--------TATAA-----------CAGCTA--TAT-AAACT-----ACATC-CTGC-ATAA--CACAATTCAGA-A-GACAT-TACCACTATTATCTA-AAAGAGTGTGACAATAATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGTA-CAAATGTTTAATTCAATTAAC-TA-TTGGGCAGAGGTAAAGGAAAATATTC--GAGGTCCACGGAAATGCTT--ATTAATCAAA--T-GA-TTCATGCTGATA-TCACATATACCGATTGATCTCATAGGTATCTAAATTATCTATTTAAATGTTGCTTAAAGATGAAATATACAGTGT-GTTC--TTT--TCGATTA-AT-----------ACAA-----AA--AAAAAATTAAGTAA-TTCGAGTT-CAAC-GACGACGAGATATCCTAACAGTAATCCAGTTCTTCTTAAC-ACCAAAAAAAT--TCCTTATACATTTCAGCCGCGCAAATTTTTCGGAAATAG-AGCCGCC
gi|1 : aatagTTATATTTGAAAATAAAAATGGTGCGCAGGAGTGATTTACATG-TATACTAAGGAATGTTTCGTAAGTTGGTTTGTTAAT-GTTCTTTGTGAGATCTAAACTTA-AAATATGGT-TATAATCAGTTTTGGGGAATGCGTTCCGTGGTAGTAGTG-GTAG-CCAGTGT--TA-GATTAGTTTTTCACATCAAAAAAAGAGGTAGTACGTGTAAAGCTGTTTTATGAAAAAATAAACTTGA-GATGATCAGTAGCTTTTTC-AGGAATAAATCATTAACGTAGTTTCA-TATAGTCACATTTTAGCACAT-GAATGAATATTCGT----AAAG-ACG-----AAGAAGAAAAAAACCTGCCCAAAGTGTCTGCCCTGAAGTCT-GGAA-GAAATGGAAAGGTCTTTTCAAA-----A--ATT-ATTTTGTG-T-GAG-------CACTTGTGACA--T-TAAATTTTGGTG-TAAT-ATAGT--------TGAC--TTGGGTTTGAACAAAAAA-TAAGTTGATTGGTTAAC-A--TATTGTGCATAT-ACATTCATA-TTTAGTTT-GAAA-ATGAATCTAT-TTGAATAAT--ATAAGAATTTGTACTAT-TTTTTAATGTCA-TGTTT----TCCAGCGGACCGGACGGT-ATTT--ATT---ACCG-TATGTATCTCTTCAAAATA--AGCTTGGCAT-GATG-A-AGACGT--TGTCT-TTG-TT--GTTAGGTGTTTTG-ATTTGTTT------GTTTGGATTTATTA---------------GGTGGGGGTTG------TT-----G--C----TTCTCTATCTCC-CTTTC--TTCTTCAAGATAT-CCGCCTTGTTCTT-GCTTTATACTCCTTCTC-G--ATAAGC-TTCTGTAAATTTCAGCTCGTGATATCTGGCCA-TCT-A-GGT----ACAGAGTAAT-CAAAATAAC-AT-TAAA--AATTTT-GCTTGAGATGGTCG--TTAC-CCA-AGA-ATGA-AAGA-GATT-GTTACTGA--TAATCTCCCATAAGAgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttattatatttgaaaataaaaatggtgcgcaggagtgatttacatgtatactaaggaatgtttcgtaagttggtttgttaatgttctttgtgagatctaaacttaaaatatggttataatcagttttggggaatgcgttccgtggtagtagtggtagccagtgttagattagtttttcacatcaaaaaaagaggtagtacgtgtaaagctgttttatgaaaaaataaacttgagatgatcagtagctttttcaggaataaatcattaacgtagtttcatatagtcacattttagcacatgaatgaatattcgtaaagacgaagaagaaaaaaacctgcccaaagtgtctgccctgaagtctggaagaaatggaaaggtcttttcaaaaattattttgtgtgagcacttgtgacattaaattttggtgtaatatagttgacttgggtttgaacaaaaaataagttgattggttaacatattgtgcatatacattcatatttagtttgaaaatgaatctatttgaataatataagaatttgtactattttttaatgtcatgttttccagcggaccggacggtatttattaccgtatgtatctcttcaaaataagcttggcatgatgaagacgttgtctttgttgttaggtgttttgatttgtttgtttggatttattaggtgggggttgttgcttctctatctccctttcttcttcaagatatccgccttgttcttgctttatactccttctcgataagcttctgtaaatttcagctcgtgatatctggccatctaggtacagagtaatcaaaataacattaaaaattttgcttgagatggtcgttacccaagaatgaaagagattgttactgataatctcccataaga
gi|10 : aatagaagtcaatctgattcaatatatgctgcatctcaaaattaaaccaaaagcagctataacttgtttttataacagctatataaactacatcctgcataacacaattcagaagacattaccactattatctaaaagagtgtgacaataatttttggtcttcgtgcacactctacgtagcaaacacaaccgtcaaaacatagtacaaatgtttaattcaattaactattgggcagaggtaaaggaaaatattcgaggtccacggaaatgcttattaatcaaatgattcatgctgatatcacatataccgattgatctcataggtatctaaattatctatttaaatgttgcttaaagatgaaatatacagtgtgttcttttcgattaatacaaaaaaaaaattaagtaattcgagttcaacgacgacgagatatcctaacagtaatccagttcttcttaacaccaaaaaaattccttatacatttcagccgcgcaaatttttcggaaatagagccgccgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttaTAGTATGTAT-CATAA-AA-CAA-T-----CGTA--GATT-CAA-T-------ATA-TGCC-GCAGA-AT--CTCAAAAATATA----C---A-ACAGCTAAAACTTCTTTT--------T-AAA-----------AAGCAACTTTT-AATCT-GGCAACA-C-CTGG-ATAA--CCCAAT--ATATA-TA-ATCTA-CAGTA
gi|11 : agctgagtttcactgtaaattaccagtatgtgttttcttctgtatcagaccgcaaaatcacactcaTAGTATGTAT-C-TAA-AA-CAA-T-----CGT---GATT-CAA-T-------ATA-TGCC-GC--A-AT--CTCAAAAATATA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATCT-GGCAACA-C-CTGC-ATAA--CCCAAT-GATATA-T--ATCTACGAGTAT
gi|12 : aactgagtttgccatgtatgtaccagtatgtgtttcttctgtcagaccgcaaaatcaactcaTAGATTAT-TGGTAAAC-A--TATT-TGCACAT-GCTTCCGTG-CTTCA-TA-GAAAGATAA--C-AT-----ATAAC-----AG-ATTTTTA
gi|13 : actagaataaatacgtgtaaaataattgctgttactctaattgatgatcatttttgttttgaaaaaaaatatcaaggggcggaatgcaatgtccgatcttactccatgttattgtgcctttgattttagaTAGTATGTAT-C-TAA-AA-CAA-T-----CCC---GATT-CAA-T-------ATA-TGTT-GC--A-AT--CTCAAAAATAAA----CCAAA-GCAGCTAAAACTTTTTTT--------T--TA-----------AATCAA--TTT-AATCT-GGCAACA-C-CTGC-ATA
gi|14 : acaactgagtttgtcctgcatataccagtatgtatctcagtgttctgtcacacagcaaaatctactcctacaaatgAGTATGTAT-C-TAA-AT-CAAAT-----CCA---GATTTCAA-TCACATGTATA-TGCT-GCC-A-ATGTTTCAAAAACTTA----CCAA-------TAAACCTTCCTTTGGGTGTTTTAAAA-----------AAGCAA--TTTCAATCT-G--AACA-CGCTGC-ATAA--CCACAT-CAT
gi|15 : tgtcagacagcaaacatatataacactcatcTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATAATGCT-GC--A-AT--CTCAAAAATTTA----TCAAA-GCAGCTAAA---------------------A-----------AAGCAA--TTT-AATCT-TGCAACA-C-CTGC-ATAA--CCCAAT-CATATAGTACATGTATCAGTATTA-CTA-A--GGGTGT
gi|16 : acagcaaatatctactcaTTTT-TGAT-GAGTACAGCCCACTTGTGAC---TATG---TTTAGTA-CA--CATG--A-------TCA-----GGAATTGAACAAAAC-GTATCTTGA-TGCTTAAC-A---ATTCTGCATAGAATTTCTGTATTTTAG-Tca
gi|18 : tttttatttgtttattttctatT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCatttccgta
gi|2 : cttctgttagacagcaaactctactcttagaaGTATGCATTC-TAATAG-CAA-T-----CCT---GATT-CAAAT-------ATA-TGCTTGC--ACAT--CTCTTTTTTTTA----TCAAAAGCAGCTATAACTTAGTTC--------TTAAA-----------AAGCA---TAT-AATCTTGACTACA-C-CTGCCATAAAACCCAAT-C-CGT--TATATTTACGAGTAT-A-CTACA--GGGTGTA-CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---GT-TTTCACG---TTAACTTACTTT----GAGATAAATGAAA-TAT-CCGGAGGTCT-CGGAAATGTGTGAGTAGCTTTTAACTAGACTTCATA-----GTTCAC-TAT---GAAT--TCTCAT---T-TCTAA-TTATCTATT-AATT-TTGCTTAAA-ATGAAA-ATACA-T-T-GTTTAACTTCATCGATTACATGGTATTGCTTCACAATGCTCAGCTGAAAACTT-AGTAATTTCGAGTTCC-ACTCTCG------------AAC-----TCCAG---TTACTAACAAACTAAAAAATCG--CTT-TACATTTCAGC
gi|2 : tATTTACATGGTATA---------ATCTAGTA---TGGTTT-----TTATCTTTTGT---ATC-AT-CTTATAAATATGGTATAT------TTTTG----AT-C-CTTCGCG-----AATGTGTAATCCAGTATATTAATAT--ATTTTT---ATCAT------------CACGTG-----CC--TTTA--AAATTATAAAACGGATGATAATCAGTAGCGTTTTCGAGGAATAT-CTAT--ACG-AGTATTAGTATA--CACATTTTG---CATAGAAAGCAAA--CGTCTAAAAA--ACGAAAGAAAAAAAAAAAA---CTGCCCAAAGTTTTTG------------------AAAGTGTA-----TTCTCAAA-----A--ATTCATTTT-TG-TAGAG-------CATCTGTGACAGTTGTA---GTTTGTGCTAATCATAGTT-------TAACACTTGGGTTTGAA-AAAAAAGTAAGTTGA-TGGTTAAC-AAATATTCTGCATATAACATCCATA-TTTAG-TTTGGAA-CTAA--CTATATTGAATAACTGAATAG-ATTTGTATT-T-TCATTA-------TTTTG----TCCAGCGG-CCGG-CGGTTATCTTAATAGATACCGGAATGTAATTTTT--------------GGCATCAAAGAAGAGACGTATT-CCTGTTGTTT--GTTTAGT-TTTTGTGTTTGTTTTATTGGGTTTGGGTTTTTTACTTGAATTTTTGGGTGGTGGGGGTGGGGGGTGTCTTGGTGCTCCGTTTTCTCTATCTCCGCTTTCGTTTCTTCAA-ATATCCCGCCTTGTCCTT-GCTTT-TACCCTTTTTCTGTCATA--C-TTC--------TCAACTCGTA--ATCTGGCCACTCTAG-GGTA---ACA---T--TCCAAAATAAGCA--TAAAACAATTT--GCTGAGAATGGTGGTATTACTCAATGAAGATGAGAAGAGT-TCAGTTACCGATTTG--CTTCC-TATAACCATTTaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaatttacatggtataatctagtatggtttttatcttttgtatcatcttataaatatggtatatttttgatccttcgcgaatgtgtaatccagtatattaatatatttttatcatcacgtgcctttaaaattataaaacggatgataatcagtagcgttttcgaggaatatctatacgagtattagtatacacattttgcatagaaagcaaacgtctaaaaaacgaaagaaaaaaaaaaaactgcccaaagtttttgaaagtgtattctcaaaaattcatttttgtagagcatctgtgacagttgtagtttgtgctaatcatagtttaacacttgggtttgaaaaaaaagtaagttgatggttaacaaatattctgcatataacatccatatttagtttggaactaactatattgaataactgaatagatttgtattttcattattttgtccagcggccggcggttatcttaatagataccggaatgtaatttttggcatcaaagaagagacgtattcctgttgtttgtttagtttttgtgtttgttttattgggtttgggttttttacttgaatttttgggtggtgggggtggggggtgtcttggtgctccgttttctctatctccgctttcgtttcttcaaatatcccgccttgtccttgcttttaccctttttctgtcatacttctcaactcgtaatctggccactctagggtaacattccaaaataagcataaaacaatttgctgagaatggtggtattactcaatgaagatgagaagagttcagttaccgatttgcttcctataaccattttta
gi|3 : tgtatgcattctaatagcaatcctgattcaaatatatgcttgcacatctcttttttttatcaaaagcagctataacttagttcttaaaaagcatataatcttgactacacctgccataaaacccaatccgttatatttacgagtatactacagggtgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttcacgttaacttactttgagataaatgaaatatccggaggtctcggaaatgtgtgagtagcttttaactagacttcatagttcactatgaattctcatttctaattatctattaattttgcttaaaatgaaaatacattgtttaacttcatcgattacatggtattgcttcacaatgctcagctgaaaacttagtaatttcgagttccactctcgaactccagttactaacaaactaaaaaatcgctttacatttcagcaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaTGGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCTAAAATTTA----TCAAA-GCAGCTATAACTTGTTTT--------TAAAA-----------AAGCAA--TAT-AATCT-TGCTACA-C-CTGC-ATAA--CCCAAT-CGTATAGTACATGTACCAGTATTA-CTA-A--GGGTGT--CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----T-TTTCACTTA--TAACTTATTTG--CAGA--TAAATGAAA-TATC---GAGGTCT-CGGAAATG--TTAGTTACTCATA-TTAGA-TTCAT----ATGTTCAC-TAT---GATT--TCTCAT---T-TCTAA-TTATCTATT-AAAT-TTGCTTAAA-ATGAAA-ATACA-TGTAGTTTAACTT--TC-ATTACATGGTTTTGCT-CA-AATTGTCAG-TGAAAATT--AGTAATT-CGA-TTC------ACCACGA---------AC-----TCCAGTTCTT---AACAA-CAAAAAAAT-GTCCTT-TACATTTCAGC------AATTT--CGCAAATAGCAGCCCCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATT-GAAAAAAAAAATGGT-C-CAGGAATG--TTACATG-TATA-----GA---TCTAGTA---TGGTTT------TATCTTTTGT---ATC-AAACTTATAAATATG---TATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTA--CCAG-GTAT--ATAT-A--TTTTCACATCA-------------CACGTG------CTTTTTA---AAAAATAAAACTGA--ATAATCAGTAGTCTTTTC-AGGAATA-ATCAT--ACG-AGTATTA-TATA---ACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGAACGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GG-AAGAAAATGAAAGG-TTTTTCAAA-----A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAAAAAAAAAGTAAGTTGA-TGGTTAACAA--TATTCTGCATATAACATCCATA-TTTAG-TT-GAAA-ATAA--CTAT-TTGAATAAT-GATAAG-ATTTGTACT-TATTTTTAATGTCATTTTTT----TCCAGCGG-CCGG-CGGT-ATTT--ATG---ACCG-AATGTATCTCTTCAAA--AATAGC-TGGCAT-GAAGAA-AGACGT--T-TCT-TTGTTT--GTTAGGT-TTTTG--TTTGTTT------GTTTG--------------ATTTT---AT--TGGGG---GGGGGT-TC-----GTTC----TTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTC-G--ATAAGCTTTCTGTA--TTTCAGCTCGTA--ATCTGGCCA-TCTAAGGGTA---ACAGAGTAATCCAAAATAA--AATTAAA--AATTTT-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCA---TG--CTCCC-TAAGACAATTTtta
gi|5 : cAGTCTCAG-A-GAAAATGAAAG--TTTTTTTTATTATTATTATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTAGTG-TAATCATAGTACATTGTATAAC--TTGGGTTTGAACGACAT-GTAAGTTGA-TGGTTAAC-A--T-TTCTGCATATAATTTCCGTA-TTTAG-TT-GAAA-ATAA--CTAT-TTGAATAAC-AATAAG-ATTTGTACT-TATTTTTAATGTCTTTTTTTTTTCTCCAG-----CGG-CGGT-ATCT--ATG---ACTG-AATGAATATCTTCAAA--AATAGT-CGGCAT-GAAGAA-AGAC----T-TCT-TTTTTTTAATTTGGT-CTT
gi|5 : T-TT-----GGTC----TTCTCTATGTCC-CTTTC-TTTTTTCAA-ATATGCCGCCTTGTTCTTGGCTTT-GACTCTTTCTC-G--ATAAGCTTTCTGTC--TTTCAGCTCGTA--ATCTGGCCA-TCTAATGATATGTTCAGAGTAATC-------------------AATTTCGGCTTGAAATGTTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCA---TG--CTCCC-TAAGACAATTctctatgtccctttcttttttcaaatatgccgccttgttcttggctttgactctttctcgataagctttctgtctttcagctcgtaatctggccatctaatgatatgttcagagtaatcaatttcggcttgaaatgttcgttaccaagaaatgaaagattcgttaccatgctccctaagacaattg
gi|8 : agtctcagagaaaatgaaagttttttttattattattattatttttgtgagcacttgtgacatgtatttagtgtaatcatagtacattgtataacttgggtttgaacgacatgtaagttgatggttaacatttctgcatataatttccgtatttagttgaaaataactatttgaataacaataagatttgtacttatttttaatgtcttttttttttctccagcggcggtatctatgactgaatgaatatcttcaaaaatagtcggcatgaagaaagacttcttttttttaaTAGTATGTAT-T-TAA-AA-CAA-TTTACACATGTAGATT-TAA-T-------ATG-TGCT-GC--A-AT--CTCCGAAATACACCGTCCAAA-GCAGCTAAAACTTCTTTTAAAATC--CAAAACAATTATTTATAAGTAA--TTT-AATCT-GGCATCA-T-CTGC-ATAA--CCCTAT-Cg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTGGAACCAAGAAACTGCCCTTTCCACTTTTTTCTGACAACTTTACACTTTCCAGTATATATCATTTCCCCCTACAAACTATAGTATTTTCATCCGCAATTCACAAGCGCTTGGGTCTATAACTACAAAGGAGAATTTGAAGTATGGATTCTTGTTTTTGATGGCTGATTTGGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGAATGAGCCTTCTGGCTTTCGTACAAATCGAAGTAGTTTCAGATAAAACTTGGACGAGAGTTTCAGATAGCACATTAGTTTTTTTTAATTAGAGTAAATACGTGTCAAAAAATTGCAGTTTAATCTTAATTGATAATTATTTTTGTTTAAAAATAAAATGAAGGTGGCAGCATACGATGGCCGGTTACCCCAAGTGCCTTTGATTTAAAAAAAATTATTAAGCCCTACCTGCTACAGATAAAGAGTGAAATCATTCAGCATTTTTCTTCTTTCGACCAAATATCTGTTTCTTTTCTTCTTTCTTTTTTTTCTATTTAAAATCTAATCTTATTTGACTTTAAATCATTTAATTTTTTTTTTTTTTTTACCGCAAAACGATATGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTA
Unaligned ( gi|6 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAATCGAAGTGTTCAGATAAATCTTTGACTGAGAGTTCGATAGTTCTTCATTAGTTTTTTTAAATTAGAGTTAATACGTGTCAAAAAATTGCCGTTATCTAATTGATAATTATTTGTTTAAACAATAAATGAAGGTGGCAGCATACGAGTCCGTCTTACCCCAAGTGCCTTCATTTACAAAAATTTTTTTCAAACTGGGAATCATTCAGCTTTTCGACCAATATCTGTTTCTTTTCTTCTTTTTTTTTTTATGACTTTAAGTTTTAATTTTTTTTTTTTTTTTACCGCAACACGATATGGAAGCACTGCTTCCGTTGTTCATAGGAGCTAGCGCC
Unaligned ( gi|7 ): TATAGTTTCAGATAAAACCTGGACAGAGTTCAGAAGCACAATAGTTGTTATAACTAGAGTAAATACGTGTCAAAAAAATTGCAGTTAATCTGAATTATTTTTTGTTTAAAATATAATGAAGGGGGCGGCATACGATGACCGGTCTTACCCCAAGTGCCTTTGATTAAACAAAAAAAGATTTATATACATGTAGGCCTACCTGCTACAGATAAAGATGAAATCATTTAGCATTTTCAACCAAATTCTTTTTTTTCTACTTAAAATCTAATTTTATTTGACATTAAATCATTTATTTTATTTTTTTTTTTTTACCGCAAAACGATGTGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTACGCCAC
Unaligned ( gi|9 ): GAAGGGACGGGATACGATGTCCGTACTTACCGCCATGTACCTTTGCAAATTTAAATAGAATTTGATAAACATGATGAAATCATCAGCATTTATAATATAGTTATTTAAAATCTAAATTCTAGTTGACTTTAAAATTATTTTCTTCTTTTAAGCGCAACAATGTCATGACATGTGGAAGGTCACATGCTATCCGTGCTTTATATGATAGGCTACGCCA
Unaligned ( gi|17 ): CCTTTGATTTAAATAAAAAATTTACATATATTTACACACATGCTACAGATTAAGATGAAATCAT
Unaligned ( gi|19 ): TTTCTATTATGGTGCAGTATGTTTGTAAATGCATTATAATTCTTG
Unaligned ( gi|20 ): ATAATTATTGAATGTCTAGCGTTGAACATTTAATAGCACT
Unaligned ( gi|21 ): GAGAACACGCACGACTCGAAAGGTAAACTTGCAAATCT
Unaligned ( gi|22 ): TGTATGTACTAGTATGTATCTCTTCTGTCAGACAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111
lowQualScore : 11111 111 1111111 333333333333333333333333 1 1 1111 22 55555555 222 1111 11 1 1 1 1111 222 1 3333333 1 222 11 22222 1 1 1 1 1 11111 11 5555555555555555555555 1 1 888888888888888888888888888 2222 1 22 1 1 222222 11 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 222 1 6666666666 222 2222222 222 1 111 22222 3333 111 33333 22 22222 2 8888888888888 33333333 11 22 1 1 11 1 1 222 222 1 1 1 1111 111111 1 1 22222222 1 2222222 111 111 33333333 11 11 11 1 11 22 1 3333 1 1 1 11 1111 1 1111111 1 1 111 11 11 1 22 333333 00000000000000000000000000 555555555555 11 1 11 1 1 1 4444444 11 1 2 2222 44444444444 22 11 1 1 1 1 111 1 1111 11 1
lowQualScore : 5 5 4 4 4 11111 3 111 4 4 3333333 4 4 99 4 55 1 9999 8 2 999999999999999999999999 66 4 555 4 4 4 66 5 0 3 5 7 1 3 0 4444 55 00000000 444 7 7 0 7777 00 3 6 3 3 8888 111 3 4444444 3 333 88 77777 3 3 3 3 3 55555 7 88 6 6 8888888888888888888888 3 4 7 7 6 666666666666666666666666666 6666 3 22 3 3 888888 88 1 5 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 1 000 7 3 9999999999 333 6666666 333 3 7 7 333 77777 0000 666 55555 7 55 7 66666 7 3 6 6666666666666 33333333 7 88 7 00 1 3 3 88 3 3 555 333 3 3 7 6 6 3 7 7 6666 333333 0 3 2 0 33333333 0 8 8 8 6666666 111 3 444 1 8 0 22222222 11 5 11 6 55 2 7 1 6 3 8 11 0 88 11 22 8 9 3 0 1111 2 0 0 0 33 7777 0 0 2 4444444 0 3 0 2 111 33 3 33 1 0 00 888888 22222222222222222222222222 6 111111111111 6 1 22 0 33 0 8 5 0 3 2 3 2222222 33 0 3 0 0000 2 3 55 66666666666 00 33 0 0 0 0 777 0 9999 33 0
lowQualScore : . . . . . ..... . ... . . ....... . . .. . .. . .... . . ........................ .. . ... . . . .. . . . . . . . . .... .. ........ ... . . . .... .. . . . . .... ... . ....... . ... .. ..... . . . . . ..... . .. . . ...................... . . . . . ........................... .... . .. . . ...... .. . . . ............................................................................................................................................. . . ... . . .......... ... ....... ... . . . ... ..... .... ... ..... . .. . ..... . . . ............. ........ . .. . .. . . . .. . . ... ... . . . . . . . . .... ...... . . . . ........ . . . . ....... ... . ... . . . ........ .. . .. . .. . . . . . . .. . .. .. .. . . . . .... . . . . .. .... . . . ....... . . . . ... .. . .. . . .. ...... .......................... . ............ . . .. . .. . . . . . . . ....... .. . . . .... . . .. ........... .. .. . . . . ... . .... .. .
lowQualScore : 0 0 4 4 4 11111 9 000 0 0 0000000 0 0 55 0 55 0 4444 9 9 666666666666666666666666 11 4 777 4 4 4 99 0 1 3 2 5 0 2 0 8888 33 77777777 333 3 3 7 3333 33 3 7 3 3 3333 333 3 0000000 3 333 33 77777 3 3 3 3 3 33333 3 33 7 7 7777777777777777777777 3 0 3 3 7 777777777777777777777777777 3333 3 33 3 3 000000 55 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 000 3 3 3333333333 333 0000000 333 3 3 3 000 77777 0000 777 77777 3 33 3 00000 3 3 7 7777777777777 00000000 3 33 3 00 0 3 3 33 3 3 000 333 3 3 3 7 7 3 3 3 7777 888888 0 2 5 0 22222222 0 0 0 0 0000000 888 2 000 4 0 8 00000000 00 0 66 7 88 5 3 0 7 3 0 00 8 88 22 00 0 8 2 0 2222 5 0 0 0 88 8888 0 2 5 8888888 0 2 0 5 000 88 2 88 0 0 00 333333 00000000000000000000000000 7 222222222222 5 0 55 0 22 0 8 0 0 2 5 2 0000000 88 0 2 0 8888 5 2 00 22222222222 55 88 0 0 0 0 000 0 8888 88 0
consensus : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATCT-GGCAACA-C-CTGC-ATAA--CCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAATAATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---A-GT-TTTCACTC-GTTAACTTATT-TGCAGAGGTAAATG-AAATATCCG-AGGTCT-CGGAAATGT-T-AGTTACTCATA-TTAGA-TTCATG-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAACTTAGTAATTTCGAGTTC-AC-ACNACGA--------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAAT-TC-CTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGTATTA-ATATA-TTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAAT-AATCAT--ACG-AGTATTA-TATA--CACATTTT---GCAT-GAAAGCA-AATCGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAAAGTAAGTTGA-TGGTTAACA--TATTCTGCATATAACNTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-CGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT---------ATTTT---GT--TGGGGGTGGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
Reference ( family-1929 ) : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATCT-GGCAACA-C-CTGC-ATAA--CCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAATAATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---A-GT-TTTCACTC-ATTAACTTACT-TGCAGAGGTAAATG-AAATATCCG-AGGTCT-CGGAAATGC-T-AGTTACTCATA-CTAGA-TTCATGATG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAANTTAGTAATTTCGAGTTCCAC-ACGACGA--------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAATGTC-CTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA--GTCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGTATTA-ATATAGTTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAAT-AATCAT--ACG-AGTATTA-TATA--CACATTTT---GCAT-GAAAGCA-AATCGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAAAGTAAGTTGA-TGGTTAACA--TATTCTGCATATAACNTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-CGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTTTT------AATTTT---GTGGTGGGGGTGGGGG------------TTCGNT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
gi|1 : A-AGTCAA-T-----C-T---GATT-CAA-T-------ATA-TGCT-GC--A--T--CTCAAAATTAAA----CCAAAAGCAGCTATAACTTGTTTT--------TATAA-----------CAGCTA--TAT-AAACT-----ACATC-CTGC-ATAA--CACAATTCAGA-A-GACAT-TACCACTATTATCTA-AAAGAGTGTGACAATAATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGTACAA-ATGTTTAATTCAATTAAC-TATTGGGCAGAGGTAAAGGAAAATATTCG-AGGTCCACGGAAATGC-T-TATTAATCAAA-T--GA-TTCATGCTGATATCACATATACCGATTGATCTCATAGGTATCTAAATTATCTATTTAAATGTTGCTTAAAGATGAAATATACAGTGT-GTTC--TTT--TCGATTA-AT------------ACAA-------AA-AAAAAATTAAGTAA-TTCGAGTTCAACGACGACGAGATATCCTAACAGTAATCCAGTTCTTCTTAAC-ACCAAAAAAAT-TC-CTTATACATTTCAGCCGCGCAAATTTTTCGGAAATAG-AGCCGCC
gi|1 : aatagTTATATTTGAAAATAAAAATGGTGCGCAGGAGTGATTTACATG-TATACTAAGGAATGTTTCGTAAGTTGGTTTGTTAATGTTCTTTGTGAGATCTAAACTTA-AAATATGGTTATAATCAGTTTTGGGGAATGCGTTCCGTGGTAGTAGTG-GTAG-CCAGTGT--TAGAT-TAGTTTTTCACATCAAAAAAAGAGGTAGTACGTGTAAAGCTGTTTTATGAAAAAATAAACTTGA-GATGATCAGTAGCTTTTTC-AGGAATAAATCATTAACGTAGTTTCA-TATAGTCACATTTTAGCACAT-GAATGAATATTCGT----AAAGA-CG-----AAGAAGAAAAAAACCTGCCCAAAGTGTCTGCCCTGAAGTCT-GGA-AGAAATGGAAAGGTCTTTTCAA--A--A--ATT-ATTTTGTG-T-GAG-------CACTTGTGACA--T-TAAATTTTGGTG-TAAT-ATAGT--------TGAC--TTGGGTTTGAACAAAAAA-TAAGTTGATTGGTTAACA--TATTGTGCATAT-ACATTCATA-TTTAGTTTGAAA-ATGAATCTAT-TTGAATAAT--ATAAGAATTTGTACTATTTTTTAATGTCA-T-GTTT----TCCAGCGGACCGGACGG-TATTT--ATT---ACC-GTATGTATCTCTTCAAAATAAGCTTGGCAT-GATG-A-AGACGT-TGTCT--TTG-TT--GTTAGGTGTTTTG-ATTTGTTT------GTTTGGATTT---------ATT------------AGGTGGGGG------------TT-GTTGCTTCTCTATCTCC-CTTTC--TTCTTCAAGATAT-CCGCCTTGTTCTT-GCTTTATACTCCTTCTCGATAAGC-TTCTGTAAA----TTTCAGCTCGTGATATCTGGCCA-TCT-A-GGT----ACAGAGTAAT-CAAAATAAC-AT-TAAA--AATTTT-GCTTGAGATGGTCG--TTAC-CCA-AGA-ATGA-AAGA-GATT-GTTACTGA--TAATCTCCCATAAGAgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttattatatttgaaaataaaaatggtgcgcaggagtgatttacatgtatactaaggaatgtttcgtaagttggtttgttaatgttctttgtgagatctaaacttaaaatatggttataatcagttttggggaatgcgttccgtggtagtagtggtagccagtgttagattagtttttcacatcaaaaaaagaggtagtacgtgtaaagctgttttatgaaaaaataaacttgagatgatcagtagctttttcaggaataaatcattaacgtagtttcatatagtcacattttagcacatgaatgaatattcgtaaagacgaagaagaaaaaaacctgcccaaagtgtctgccctgaagtctggaagaaatggaaaggtcttttcaaaaattattttgtgtgagcacttgtgacattaaattttggtgtaatatagttgacttgggtttgaacaaaaaataagttgattggttaacatattgtgcatatacattcatatttagtttgaaaatgaatctatttgaataatataagaatttgtactattttttaatgtcatgttttccagcggaccggacggtatttattaccgtatgtatctcttcaaaataagcttggcatgatgaagacgttgtctttgttgttaggtgttttgatttgtttgtttggatttattaggtgggggttgttgcttctctatctccctttcttcttcaagatatccgccttgttcttgctttatactccttctcgataagcttctgtaaatttcagctcgtgatatctggccatctaggtacagagtaatcaaaataacattaaaaattttgcttgagatggtcgttacccaagaatgaaagagattgttactgataatctcccataaga
gi|10 : aatagaagtcaatctgattcaatatatgctgcatctcaaaattaaaccaaaagcagctataacttgtttttataacagctatataaactacatcctgcataacacaattcagaagacattaccactattatctaaaagagtgtgacaataatttttggtcttcgtgcacactctacgtagcaaacacaaccgtcaaaacatagtacaaatgtttaattcaattaactattgggcagaggtaaaggaaaatattcgaggtccacggaaatgcttattaatcaaatgattcatgctgatatcacatataccgattgatctcataggtatctaaattatctatttaaatgttgcttaaagatgaaatatacagtgtgttcttttcgattaatacaaaaaaaaaattaagtaattcgagttcaacgacgacgagatatcctaacagtaatccagttcttcttaacaccaaaaaaattccttatacatttcagccgcgcaaatttttcggaaatagagccgccgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttaTAGTATGTAT-CATAA-AA-CAA-T-----CGTA--GATT-CAA-T-------ATA-TGCC-GCAGA-AT--CTCAAAAATATA----C---A-ACAGCTAAAACTTCTTTT--------T-AAA-----------AAGCAACTTTT-AATCT-GGCAACA-C-CTGG-ATAA--CCCAAT--ATATA-TA-ATCTA-CAGTA
gi|11 : agctgagtttcactgtaaattaccagtatgtgttttcttctgtatcagaccgcaaaatcacactcaTAGTATGTAT-C-TAA-AA-CAA-T-----CGT---GATT-CAA-T-------ATA-TGCC-GC--A-AT--CTCAAAAATATA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATCT-GGCAACA-C-CTGC-ATAA--CCCAAT-GATATA-T--ATCTACGAGTAT
gi|12 : aactgagtttgccatgtatgtaccagtatgtgtttcttctgtcagaccgcaaaatcaactcaTAGATTAT-TGGTAAACA--TATT-TGCACAT-GCTTCCGTG-CTTCA-TAGAAAGATAA--C-AT-----ATAAC-----AG-ATTTTTA
gi|13 : actagaataaatacgtgtaaaataattgctgttactctaattgatgatcatttttgttttgaaaaaaaatatcaaggggcggaatgcaatgtccgatcttactccatgttattgtgcctttgattttagaTAGTATGTAT-C-TAA-AA-CAA-T-----CCC---GATT-CAA-T-------ATA-TGTT-GC--A-AT--CTCAAAAATAAA----CCAAA-GCAGCTAAAACTTTTTTT--------T--TA-----------AATCAA--TTT-AATCT-GGCAACA-C-CTGC-ATA
gi|14 : acaactgagtttgtcctgcatataccagtatgtatctcagtgttctgtcacacagcaaaatctactcctacaaatgAGTATGTAT-C-TAA-AT-CAAAT-----CCA---GATTTCAA-TCACATGTATA-TGCT-GCC-A-ATGTTTCAAAAACTTA----CCAA-------TAAACCTTCCTTTGGGTGTTTTAAAA-----------AAGCAA--TTTCAATCT-G--AACA-CGCTGC-ATAA--CCACAT-CAT
gi|15 : tgtcagacagcaaacatatataacactcatcTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATAATGCT-GC--A-AT--CTCAAAAATTTA----TCAAA-GCAGCTAAA---------------------A-----------AAGCAA--TTT-AATCT-TGCAACA-C-CTGC-ATAA--CCCAAT-CATATAGTACATGTATCAGTATTA-CTA-A--GGGTGT
gi|16 : acagcaaatatctactcaTTTT-TGAT-GAGTACAGCCCACTTGTGAC---TATG---TTTAGTA-CA--CATG--A-------TCA-----GGAATTGAACAAAAC-GTATCTTGA-TGCTTAACA---ATTCTGCATAGAATTTCTGTATTTTAG-Tca
gi|18 : tttttatttgtttattttctatT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCatttccgta
gi|2 : cttctgttagacagcaaactctactcttagaaGTATGCATTC-TAATAG-CAA-T-----CCT---GATT-CAAAT-------ATA-TGCTTGC--ACAT--CTCTTTTTTTTA----TCAAAAGCAGCTATAACTTAGTTC--------TTAAA-----------AAGCA---TAT-AATCTTGACTACA-C-CTGCCATAAAACCCAAT-C-CGT--TATATTTACGAGTAT-A-CTACA--GGGTGTA-CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNGT-TTTCAC---GTTAACTTACT-TT--GAGATAAATG-AAATATCCGGAGGTCT-CGGAAATGTGTGAGTAGCTTTTAACTAGACTTCATA--G-T-TCAC-TAT---GAAT--TCTCAT---T-TCT-AATTATCTA-TTAATT-TTGCTTAAA-ATGAAA-ATACA-T-T-GTTTAACTTCATCGATTACATGGTATT-GCTTCACAATGCT--CAGCTGAAAACTTAGTAATTTCGAGTTCCAC-TCT-CG---------AAC-----TCCAGTTA--C-TAACAAACTAAAAAA--TCGCTT-TACATTTCAGC
gi|2 : tATTTACATGGTATA-----A----TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AT-CTTATAAATATGGT-ATA-T---TTTTG----AT-C-CTTCGCG-----AATGTGTAATCCAGTATATTA-ATATA-TTTTT---ATCAT------------CACGTGC----CT--TT-A--AAATTATAAAACGGATGATAATCAGTAGCGTTTTCGAGGAAT-ATCTAT--ACG-AGTATTAGTATA--CACATTTT---GCATAGAAAGCA-AA-CGTCTAAAAA-A-CGAAAGAAAAAAAAAAAA---CTGCCCAAAGTTTTTG-----------------AAAGT-GTA-----TTCTCAA--A--A--ATTCATTTT-TG-TAGAG-------CATCTGTGACAGTTGTA---GTTTGTGCTAATCATAGTT-------TAACACTTGGGTTTGAA-AAAAAAGTAAGTTGA-TGGTTAACAAATATTCTGCATATAACATCCATA-TTTAGTTTGGAA-CTAA--CTATATTGAATAACTGAATAG-ATTTGTATTT----------TCATTATTTTG---TCCAGCGG-CCGG-CGGTTATCTTAATAGATACCGGAATGTAATTTTT------------GGCATCAAAGAAGAGACGTAT-TCCTGTTGTTT--GTTTAGT-TTTTGTGTTTGTTTTATTGGGTTTGGGTTTTTTACTTGAATTTTTGGGTGGTGGGGGTGGGGGGTGTCTTGGTGCTCCGTT--TTCTCTATCTCCGCTTTCGTTTCTTCAA-ATATCCCGCCTTGTCCTT-GCTTT-TAC-CCTT----------TTTCTGTC-ATACTTCTCAACTCGTA--ATCTGGCCACTCTAG-GGTA---ACA---T--TCCAAAATAAGCA--TAAAACAATTT--GCTGAGAATGGTGGTATTACTCAATGAAGATGAGAAGAGT-TCAGTTACCGATTTG--CTTCC-TATAACCATTTaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaatttacatggtataatctagtatggtttttatcttttgtatcatcttataaatatggtatatttttgatccttcgcgaatgtgtaatccagtatattaatatatttttatcatcacgtgcctttaaaattataaaacggatgataatcagtagcgttttcgaggaatatctatacgagtattagtatacacattttgcatagaaagcaaacgtctaaaaaacgaaagaaaaaaaaaaaactgcccaaagtttttgaaagtgtattctcaaaaattcatttttgtagagcatctgtgacagttgtagtttgtgctaatcatagtttaacacttgggtttgaaaaaaaagtaagttgatggttaacaaatattctgcatataacatccatatttagtttggaactaactatattgaataactgaatagatttgtattttcattattttgtccagcggccggcggttatcttaatagataccggaatgtaatttttggcatcaaagaagagacgtattcctgttgtttgtttagtttttgtgtttgttttattgggtttgggttttttacttgaatttttgggtggtgggggtggggggtgtcttggtgctccgttttctctatctccgctttcgtttcttcaaatatcccgccttgtccttgcttttaccctttttctgtcatacttctcaactcgtaatctggccactctagggtaacattccaaaataagcataaaacaatttgctgagaatggtggtattactcaatgaagatgagaagagttcagttaccgatttgcttcctataaccattttta
gi|3 : tgtatgcattctaatagcaatcctgattcaaatatatgcttgcacatctcttttttttatcaaaagcagctataacttagttcttaaaaagcatataatcttgactacacctgccataaaacccaatccgttatatttacgagtatactacagggtgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttcacgttaacttactttgagataaatgaaatatccggaggtctcggaaatgtgtgagtagcttttaactagacttcatagttcactatgaattctcatttctaattatctattaattttgcttaaaatgaaaatacattgtttaacttcatcgattacatggtattgcttcacaatgctcagctgaaaacttagtaatttcgagttccactctcgaactccagttactaacaaactaaaaaatcgctttacatttcagcaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaTGGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCTAAAATTTA----TCAAA-GCAGCTATAACTTGTTTT--------TAAAA-----------AAGCAA--TAT-AATCT-TGCTACA-C-CTGC-ATAA--CCCAAT-CGTATAGTACATGTACCAGTATTA-CTA-A--GGGTGT--CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N--T-TTTCACTT-AT-AACTTATT-TGCAGA--TAAATG-AAATATC-G-AGGTCT-CGGAAATGT-T-AGTTACTCATA-TTAGA-TTCAT-ATG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGTAGTTTAACTT--TC-ATTACATGGT-TTTGC-TCA-AAT--TGTCAG-TGAAAA-TTAGTAATT-CGA-TTC----ACCACGA--------A-C-----TCCAGTTCTT---AAC-AACAAAAAAATGTC-CTT-TACATTTCAGC------AATTT--CGCAAATAGCAGCCCCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATT-GAAAAAAAAAATGGT-C-CAGGAATG--TTACATG-TATA-----GA---TCTAGTA---TGGTTT-T-A---TCTTTTGT---ATC-AAACTTATAAATATG--TATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTA--CCAG-GTAT---ATATA--TTTTCACATCA-------------CACGTGC----TT--TTTA--AAAAA-TAAAACTGA--ATAATCAGTAGTCTTTTC-AGGAAT-AATCAT--ACG-AGTATTA-TATA---ACATTTT---GCAT-GAAAGCA-AATCGTCTAAAAAGAACGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGAAGAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAAAAAAAAAGTAAGTTGA-TGGTTAACAA-TATTCTGCATATAACATCCATA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAT-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATTT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-TGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTAGGT-TTTT--GTTTGTTT------GTTTG--------------ATTTT---AT--TGGGG--GGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAAGGGTA---ACAGAGTAATCCAAAATAA--AATTAAA--AATTTT-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A--TG--CTCCC-TAAGACAATTTtta
gi|5 : cAGTCTCAGA-GAAAAT-GAAAGTT-TTTTTTATTATTATTATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTAGTG-TAATCATAGTACATTGTATAAC--TTGGGTTTGAACGACAT-GTAAGTTGA-TGGTTAACA--T-TTCTGCATATAATTTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-AATAAG-ATTTGTACTTATTTTTAATGTCTTT-TTTTTTTCTCCAG-----CGG-CGG-TATCT--ATG---ACT-GAATGAATATCTTCAAAAATAGT-CGGCAT-GAAGAA-AGAC---T-TCT--TTTTTTTAATTTGGT-CTT
gi|5 : ------------TTTGGT-CTTCTCTATGTCC-CTTTC-TTTTTTCAA-ATATGCCGCCTTGTTCTTGGCTTT-GACTCTTTCTCGATAAGCTTTCTGT--C----TTTCAGCTCGTA--ATCTGGCCA-TCTAATGATATGTTCAGAGTAATC-------------------AATTTCGGCTTGAAATGTTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A--TG--CTCCC-TAAGACAATTctctatgtccctttcttttttcaaatatgccgccttgttcttggctttgactctttctcgataagctttctgtctttcagctcgtaatctggccatctaatgatatgttcagagtaatcaatttcggcttgaaatgttcgttaccaagaaatgaaagattcgttaccatgctccctaagacaattg
gi|8 : agtctcagagaaaatgaaagttttttttattattattattatttttgtgagcacttgtgacatgtatttagtgtaatcatagtacattgtataacttgggtttgaacgacatgtaagttgatggttaacatttctgcatataatttccgtatttagttgaaaataactatttgaataacaataagatttgtacttatttttaatgtcttttttttttctccagcggcggtatctatgactgaatgaatatcttcaaaaatagtcggcatgaagaaagacttcttttttttaaTAGTATGTAT-T-TAA-AA-CAA-TTTACACATGTAGATT-TAA-T-------ATG-TGCT-GC--A-AT--CTCCGAAATACACCGTCCAAA-GCAGCTAAAACTTCTTTTAAAATC--CAAAACAATTATTTATAAGTAA--TTT-AATCT-GGCATCA-T-CTGC-ATAA--CCCTAT-Cg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTGGAACCAAGAAACTGCCCTTTCCACTTTTTTCTGACAACTTTACACTTTCCAGTATATATCATTTCCCCCTACAAACTATAGTATTTTCATCCGCAATTCACAAGCGCTTGGGTCTATAACTACAAAGGAGAATTTGAAGTATGGATTCTTGTTTTTGATGGCTGATTTGGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGAATGAGCCTTCTGGCTTTCGTACAAATCGAAGTAGTTTCAGATAAAACTTGGACGAGAGTTTCAGATAGCACATTAGTTTTTTTTAATTAGAGTAAATACGTGTCAAAAAATTGCAGTTTAATCTTAATTGATAATTATTTTTGTTTAAAAATAAAATGAAGGTGGCAGCATACGATGGCCGGTTACCCCAAGTGCCTTTGATTTAAAAAAAATTATTAAGCCCTACCTGCTACAGATAAAGAGTGAAATCATTCAGCATTTTTCTTCTTTCGACCAAATATCTGTTTCTTTTCTTCTTTCTTTTTTTTCTATTTAAAATCTAATCTTATTTGACTTTAAATCATTTAATTTTTTTTTTTTTTTTACCGCAAAACGATATGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTA
Unaligned ( gi|6 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAATCGAAGTGTTCAGATAAATCTTTGACTGAGAGTTCGATAGTTCTTCATTAGTTTTTTTAAATTAGAGTTAATACGTGTCAAAAAATTGCCGTTATCTAATTGATAATTATTTGTTTAAACAATAAATGAAGGTGGCAGCATACGAGTCCGTCTTACCCCAAGTGCCTTCATTTACAAAAATTTTTTTCAAACTGGGAATCATTCAGCTTTTCGACCAATATCTGTTTCTTTTCTTCTTTTTTTTTTTATGACTTTAAGTTTTAATTTTTTTTTTTTTTTTACCGCAACACGATATGGAAGCACTGCTTCCGTTGTTCATAGGAGCTAGCGCC
Unaligned ( gi|7 ): TATAGTTTCAGATAAAACCTGGACAGAGTTCAGAAGCACAATAGTTGTTATAACTAGAGTAAATACGTGTCAAAAAAATTGCAGTTAATCTGAATTATTTTTTGTTTAAAATATAATGAAGGGGGCGGCATACGATGACCGGTCTTACCCCAAGTGCCTTTGATTAAACAAAAAAAGATTTATATACATGTAGGCCTACCTGCTACAGATAAAGATGAAATCATTTAGCATTTTCAACCAAATTCTTTTTTTTCTACTTAAAATCTAATTTTATTTGACATTAAATCATTTATTTTATTTTTTTTTTTTTACCGCAAAACGATGTGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTACGCCAC
Unaligned ( gi|9 ): GAAGGGACGGGATACGATGTCCGTACTTACCGCCATGTACCTTTGCAAATTTAAATAGAATTTGATAAACATGATGAAATCATCAGCATTTATAATATAGTTATTTAAAATCTAAATTCTAGTTGACTTTAAAATTATTTTCTTCTTTTAAGCGCAACAATGTCATGACATGTGGAAGGTCACATGCTATCCGTGCTTTATATGATAGGCTACGCCA
Unaligned ( gi|17 ): CCTTTGATTTAAATAAAAAATTTACATATATTTACACACATGCTACAGATTAAGATGAAATCAT
Unaligned ( gi|19 ): TTTCTATTATGGTGCAGTATGTTTGTAAATGCATTATAATTCTTG
Unaligned ( gi|20 ): ATAATTATTGAATGTCTAGCGTTGAACATTTAATAGCACT
Unaligned ( gi|21 ): GAGAACACGCACGACTCGAAAGGTAAACTTGCAAATCT
Unaligned ( gi|22 ): TGTATGTACTAGTATGTATCTCTTCTGTCAGACAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 1111111 333333333333333333333333 1 1 1111 22 1 3333333 22222 1 111 11 1 22 1 111 1 1 2222222 1 222 11 22222 1 1 1 1 1 11111 11 5555555555555555555555 1 1 9999999999999999999999999999 2222 1 1 1 222222 11 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 222 1 5555555555 222 2222222 222 1 111 22222 3333 111 33333 22 222 11 8888888888888 33333333 11 22 1 1 11 1 1 222 222 1 22 1 1111 111111 1 1 22222222 1 2222222 111 111 33333333 11 11 11 1 11 22 1 3333 1 1 1 11 1111 1 1111111 1 1 111 11 11 1 22 333333 88888888888888888888888888 555555555555 11 1 11 1 1 1 4444444 11 1 2 2222 44444444444 22 11 1 1 1 1 111 1 1111 11 1
lowQualScore : 5 5 4 4 4 11111 3 111 4 4 3333333 4 4 99 4 55 1 9999 8 2 999999999999999999999999 66 4 4 11 4 4 4 66 5 0 3 5 7 1 0 0 4444 55 3 7777777 00000 7 7 3 999 00 3 00 3 777 3 7 3 9999999 3 333 88 77777 3 3 3 3 3 55555 7 88 6 6 8888888888888888888888 3 2 7 7 6 4444444444444444444444444444 6666 3 3 3 888888 88 1 5 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 1 000 7 3 4444444444 333 6666666 333 3 7 7 333 77777 0000 666 55555 7 55 7 333 7 7 44 6666666666666 33333333 7 88 7 00 1 3 3 88 3 3 555 333 3 00 6 6 3 7 7 6666 333333 0 3 2 0 33333333 0 8 8 8 6666666 111 3 444 1 8 0 22222222 11 5 11 6 55 2 7 1 6 3 8 11 0 88 11 22 8 9 3 0 1111 2 0 0 0 33 7777 0 0 2 4444444 0 3 0 2 111 33 3 33 1 0 00 888888 44444444444444444444444444 6 111111111111 6 22 0 33 0 8 5 0 3 2 3 2222222 33 0 3 0 0000 2 3 55 66666666666 00 33 0 0 0 0 777 0 9999 33 0
lowQualScore : . . . . . ..... . ... . . ....... . . .. . .. . .... . . ........................ .. . . .. . . . .. . . . . . . . . .... .. . ....... ..... . . . ... .. . .. . ... . . . ....... . ... .. ..... . . . . . ..... . .. . . ...................... . . . . . ............................ .... . . . ...... .. . . . ............................................................................................................................................. . . ... . . .......... ... ....... ... . . . ... ..... .... ... ..... . .. . ... . . .. ............. ........ . .. . .. . . . .. . . ... ... . .. . . . . . .... ...... . . . . ........ . . . . ....... ... . ... . . . ........ .. . .. . .. . . . . . . .. . .. .. .. . . . . .... . . . . .. .... . . . ....... . . . . ... .. . .. . . .. ...... .......................... . ............ . .. . .. . . . . . . . ....... .. . . . .... . . .. ........... .. .. . . . . ... . .... .. .
lowQualScore : 0 0 4 4 4 11111 9 000 0 0 0000000 0 0 55 0 55 0 4444 9 9 666666666666666666666666 11 4 4 22 4 4 4 11 0 1 3 2 5 0 8 0 8888 33 3 3333333 33333 3 3 3 000 33 3 00 3 777 3 3 3 0000000 3 333 33 77777 3 3 3 3 3 33333 3 33 7 7 7777777777777777777777 3 0 3 3 7 3333333333333333333333333333 3333 3 3 3 000000 55 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 000 3 3 3333333333 333 0000000 333 3 3 3 000 77777 0000 777 77777 3 33 3 333 3 3 00 7777777777777 00000000 3 33 3 00 0 3 3 33 3 3 000 333 3 77 7 7 3 3 3 7777 888888 0 2 5 0 22222222 0 0 0 0 0000000 888 2 000 4 0 8 00000000 00 0 66 7 88 5 3 0 7 3 0 00 8 88 22 00 0 8 2 0 2222 5 0 0 0 88 8888 0 2 5 8888888 0 2 0 5 000 88 2 88 0 0 00 333333 33333333333333333333333333 7 222222222222 5 55 0 22 0 8 0 0 2 5 2 0000000 88 0 2 0 8888 5 2 00 22222222222 55 88 0 0 0 0 000 0 8888 88 0
consensus : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---AGT-TTTCACTC-GTTAACTTA-TT-TGCAGAGGTAAATG-AAATATCC-GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAACTTAGTAATTTCGAGTTCACACNACGA-----------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAAT-TCCTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGT---ATTAATATATTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA--CACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAAAGTAAGTTGA-TGGTTAACA--TATTCTGCATATAACNTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-CGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT---------ATTTT---GT--TGGGGGTGGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
Reference ( family-1929 ) : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---AGT-TTTCACTC-GTTAACTTA-TT-TGCAGAGGTAAATG-AAATATCC-GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATG-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAACTTAGTAATTTCGAGTTCACACNACGA-----------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAAT-TCCTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGT---ATTAATATATTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA--CACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAAAGTAAGTTGA-TGGTTAACA--TATTCTGCATATAACNTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-CGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT---------ATTTT---GT--TGGGGGTGGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
gi|1 : A-AGTCAA-T-----C-T---GATT-CAA-T-------ATA-TGCT-GC--A--T--CTCAAAATTAAA----CCAAAAGCAGCTATAACTTGTTTT--------TATAA-----------CAGCTA--TAT-AAAC-T----ACATC-CTG-CAT--AACACAATTCAGA-A-GACAT-TACCACTATTATCTA-AAAGAGTGTGACAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGTACAAATGTTTAATTCAATTAAC-TA-TTGGGCAGAGGTAAAGGAAAATATTC-GAGGTCCACGGAAATGC-T-TATTAATCAA-AT--GA-TTCATGCTGATATCACATATACCGATTGATCTCATAGGTATCTAAATTATCTATTTAAATGTTGCTTAAAGATGAAATATACAGTGT-GTTC--TTT--TCGATTA-AT------------ACAA-------AA-AAAAAATTAAGTAA-TTCGAGTTCA-ACGACGACGAGATATCCTAACAGTAATCCAGTTCTTCTTAAC-ACCAAAAAAAT-TCCTTATACATTTCAGCCGCGCAAATTTTTCGGAAATAG-AGCCGCC
gi|1 : aatagTTATATTTGAAAATAAAAATGGTGCGCAGGAGTGATTTACATG-TATACTAAGGAATGTTTCGTAAGTTGGTTTGTTAATGTTCTTTGTGAGATCTAAACTTA-AAATATGGTTATAATCAGTTTTGGGGAATGCGTTCCGTGGTAGTAGTG-GTAG-CCAGTGTTAGATTAGT----TTTTCACATCAAAAAAAGAGGTAGTACGTGTAAAGCTGTTTTATGAAAAAATAAACTTGA-GATGATCAGTAGCTTTTTC-AGGAATAAATCATTAACGTAGTTTCA-TATAGTCACATTTTAGCACAT-GAATGAATATTCGT----AAAGA-CGAA-----GAAGAAAAAAACCTGCCCAAAGTGTCTGCCCTGAAGTCT-GGA-AGAAATGGAAAGGTCTTTTCAA--A--A--ATT-ATTTTGTG-T-GAG-------CACTTGTGACA--T-TAAATTTTGGTG-TAAT-ATAGT--------TGAC--TTGGGTTTGAACAAAAAA-TAAGTTGATTGGTTAACA--TATTGTGCATAT-ACATTCATA-TTTAGTTTGAAA-ATGAATCTAT-TTGAATAAT--ATAAGAATTTGTACTATTTTTTAATGTCA-T-GTTT----TCCAGCGGACCGGACGG-TATTT--ATT---ACC-GTATGTATCTCTTCAAAATAAGCTTGGCAT-GATG-A-AGACGT-TGTCT--TTG-TT--GTTAGGTGTTTTG-ATTTGTTT------GTTTGGATTT---------ATT------------AGGTGGGGG------------TT-GTTGCTTCTCTATCTCC-CTTTC--TTCTTCAAGATAT-CCGCCTTGTTCTT-GCTTTATACTCCTTCTCGATAAGC-TTCTGTAAA----TTTCAGCTCGTGATATCTGGCCA-TCT-A-GGT----ACAGAGTAAT-CAAAATAAC-AT-TAAA--AATTTT-GCTTGAGATGGTCG--TTAC-CCA-AGA-ATGA-AAGA-GATT-GTTACTGA--TAATCTCCCATAAGAgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttattatatttgaaaataaaaatggtgcgcaggagtgatttacatgtatactaaggaatgtttcgtaagttggtttgttaatgttctttgtgagatctaaacttaaaatatggttataatcagttttggggaatgcgttccgtggtagtagtggtagccagtgttagattagtttttcacatcaaaaaaagaggtagtacgtgtaaagctgttttatgaaaaaataaacttgagatgatcagtagctttttcaggaataaatcattaacgtagtttcatatagtcacattttagcacatgaatgaatattcgtaaagacgaagaagaaaaaaacctgcccaaagtgtctgccctgaagtctggaagaaatggaaaggtcttttcaaaaattattttgtgtgagcacttgtgacattaaattttggtgtaatatagttgacttgggtttgaacaaaaaataagttgattggttaacatattgtgcatatacattcatatttagtttgaaaatgaatctatttgaataatataagaatttgtactattttttaatgtcatgttttccagcggaccggacggtatttattaccgtatgtatctcttcaaaataagcttggcatgatgaagacgttgtctttgttgttaggtgttttgatttgtttgtttggatttattaggtgggggttgttgcttctctatctccctttcttcttcaagatatccgccttgttcttgctttatactccttctcgataagcttctgtaaatttcagctcgtgatatctggccatctaggtacagagtaatcaaaataacattaaaaattttgcttgagatggtcgttacccaagaatgaaagagattgttactgataatctcccataaga
gi|10 : aatagaagtcaatctgattcaatatatgctgcatctcaaaattaaaccaaaagcagctataacttgtttttataacagctatataaactacatcctgcataacacaattcagaagacattaccactattatctaaaagagtgtgacaataatttttggtcttcgtgcacactctacgtagcaaacacaaccgtcaaaacatagtacaaatgtttaattcaattaactattgggcagaggtaaaggaaaatattcgaggtccacggaaatgcttattaatcaaatgattcatgctgatatcacatataccgattgatctcataggtatctaaattatctatttaaatgttgcttaaagatgaaatatacagtgtgttcttttcgattaatacaaaaaaaaaattaagtaattcgagttcaacgacgacgagatatcctaacagtaatccagttcttcttaacaccaaaaaaattccttatacatttcagccgcgcaaatttttcggaaatagagccgccgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttaTAGTATGTAT-CATAA-AA-CAA-T-----CGTA--GATT-CAA-T-------ATA-TGCC-GCAGA-AT--CTCAAAAATATA----C---A-ACAGCTAAAACTTCTTTT--------T-AAA-----------AAGCAACTTTT-AATC-TGGCAACA-C-CTG-GAT--AACCCAAT--ATATA-TA-ATCTA-CAGTA
gi|11 : agctgagtttcactgtaaattaccagtatgtgttttcttctgtatcagaccgcaaaatcacactcaTAGTATGTAT-C-TAA-AA-CAA-T-----CGT---GATT-CAA-T-------ATA-TGCC-GC--A-AT--CTCAAAAATATA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-GATATA-T--ATCTACGAGTAT
gi|12 : aactgagtttgccatgtatgtaccagtatgtgtttcttctgtcagaccgcaaaatcaactcaTAGATTAT-TGGTAAACA--TATT-TGCACAT-GCTTCCGTG-CTTCA-TAGAAAGATAA--C-AT-----ATAAC-----AG-ATTTTTA
gi|13 : actagaataaatacgtgtaaaataattgctgttactctaattgatgatcatttttgttttgaaaaaaaatatcaaggggcggaatgcaatgtccgatcttactccatgttattgtgcctttgattttagaTAGTATGTAT-C-TAA-AA-CAA-T-----CCC---GATT-CAA-T-------ATA-TGTT-GC--A-AT--CTCAAAAATAAA----CCAAA-GCAGCTAAAACTTTTTTT--------T--TA-----------AATCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--A
gi|14 : acaactgagtttgtcctgcatataccagtatgtatctcagtgttctgtcacacagcaaaatctactcctacaaatgAGTATGTAT-C-TAA-AT-CAAAT-----CCA---GATTTCAA-TCACATGTATA-TGCT-GCC-A-ATGTTTCAAAAACTTA----CCAA-------TAAACCTTCCTTTGGGTGTTTTAAAA-----------AAGCAA--TTTCAATC-TG--AACA-CGCTG-CAT--AACCACAT-CAT
gi|15 : tgtcagacagcaaacatatataacactcatcTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATAATGCT-GC--A-AT--CTCAAAAATTTA----TCAAA-GCAGCTAAA---------------------A-----------AAGCAA--TTT-AATC-TTGCAACA-C-CTG-CAT--AACCCAAT-CATATAGTACATGTATCAGTATTA-CTA-A--GGGTGT
gi|16 : acagcaaatatctactcaTTTT-TGAT-GAGTACAGCCCACTTGTGAC---TATG---TTTAGTA-CA--CATG--A-------TCA-----GGAATTGAACAAAAC-GTATCTTGA-TGCTTAACA---ATTCTGCATAGAATTTCTGTATTTTAG-Tca
gi|18 : tttttatttgtttattttctatT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCatttccgta
gi|2 : cttctgttagacagcaaactctactcttagaaGTATGCATTC-TAATAG-CAA-T-----CCT---GATT-CAAAT-------ATA-TGCTTGC--ACAT--CTCTTTTTTTTA----TCAAAAGCAGCTATAACTTAGTTC--------TTAAA-----------AAGC-A--TAT-AATCTTGACTACA-C-CTGCCATAAAACCCAAT-C-CGT--TATATTTACGAGTA-TA-CTACA--GGGTGTA-CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NGT-TTTCA--C-GTTAACTTACTT-T---GAGATAAATG-AAATATCCGGAGGTCT-CGGAAATGTGTGAGTAGCTTTTAACTAGACTTCATA--G-T-TCAC-TAT---GAAT--TCTCAT---T-TCT-AATTATCTA-TTAATT-TTGCTTAAA-ATGAAA-ATACA-T-T-GTTTAACTTCATCGATTACATGGTATT-GCTTCACAATGCT--CAGCTGAAAACTTAGTAATTTCGAGTTC-CACTCTCG-----------AAC-----TCCAGTTA--C-TAACAAACTAAAAAAT-CGCTT-TACATTTCAGC
gi|2 : tATTTACATGGTATA------A---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AT-CTTATAAATATGGT-ATA-T---TTTTG----AT-C-CTTCGCG-----AATGTGTAATCCAGTAT---ATTAATATATTTTT---ATCAT------------CACGTGC----CT--TT-A--AAATTATAAAACGGATGATAATCAGTAGCGTTTTCGAGGAATAT-CTAT--ACG-AGTATTAGTATA--CACATTTTG---CATAGAAAGCAAA--CGTCTAAAAA-A-CGAAAGAAAAAAAAAAAA---CTGCCCAAAGTTTTTG-----------------AAAGT-GTA-----TTCTCAA--A--A--ATTCATTTT-TG-TAGAG-------CATCTGTGACAGTTGTA---GTTTGTGCTAATCATAGTT-------TAACACTTGGGTTTGAA-AAAAAAGTAAGTTGA-TGGTTAACAAATATTCTGCATATAACATCCATA-TTTAGTTTGGAA-CTAA--CTATATTGAATAACTGAATAG-ATTTGTATTT----------TCATTATTTTG---TCCAGCGG-CCGG-CGGTTATCTTAATAGATACCGGAATGTAATTTTT------------GGCATCAAAGAAGAGACGTAT-TCCTGTTGTTT--GTTTAGT-TTTTGTGTTTGTTTTATTGGGTTTGGGTTTTTTACTTGAATTTTTGGGTGGTGGGGGTGGGGGGTGTCTTGGTGCTCCGTT--TTCTCTATCTCCGCTTTCGTTTCTTCAA-ATATCCCGCCTTGTCCTT-GCTTT-TAC-CCTT----------TTTCTGTC-ATACTTCTCAACTCGTA--ATCTGGCCACTCTAG-GGTA---ACA---T--TCCAAAATAAGCA--TAAAACAATTT--GCTGAGAATGGTGGTATTACTCAATGAAGATGAGAAGAGT-TCAGTTACCGATTTG--CTTCC-TATAACCATTTaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaatttacatggtataatctagtatggtttttatcttttgtatcatcttataaatatggtatatttttgatccttcgcgaatgtgtaatccagtatattaatatatttttatcatcacgtgcctttaaaattataaaacggatgataatcagtagcgttttcgaggaatatctatacgagtattagtatacacattttgcatagaaagcaaacgtctaaaaaacgaaagaaaaaaaaaaaactgcccaaagtttttgaaagtgtattctcaaaaattcatttttgtagagcatctgtgacagttgtagtttgtgctaatcatagtttaacacttgggtttgaaaaaaaagtaagttgatggttaacaaatattctgcatataacatccatatttagtttggaactaactatattgaataactgaatagatttgtattttcattattttgtccagcggccggcggttatcttaatagataccggaatgtaatttttggcatcaaagaagagacgtattcctgttgtttgtttagtttttgtgtttgttttattgggtttgggttttttacttgaatttttgggtggtgggggtggggggtgtcttggtgctccgttttctctatctccgctttcgtttcttcaaatatcccgccttgtccttgcttttaccctttttctgtcatacttctcaactcgtaatctggccactctagggtaacattccaaaataagcataaaacaatttgctgagaatggtggtattactcaatgaagatgagaagagttcagttaccgatttgcttcctataaccattttta
gi|3 : tgtatgcattctaatagcaatcctgattcaaatatatgcttgcacatctcttttttttatcaaaagcagctataacttagttcttaaaaagcatataatcttgactacacctgccataaaacccaatccgttatatttacgagtatactacagggtgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttcacgttaacttactttgagataaatgaaatatccggaggtctcggaaatgtgtgagtagcttttaactagacttcatagttcactatgaattctcatttctaattatctattaattttgcttaaaatgaaaatacattgtttaacttcatcgattacatggtattgcttcacaatgctcagctgaaaacttagtaatttcgagttccactctcgaactccagttactaacaaactaaaaaatcgctttacatttcagcaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaTGGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCTAAAATTTA----TCAAA-GCAGCTATAACTTGTTTT--------TAAAA-----------AAGCAA--TAT-AATC-TTGCTACA-C-CTG-CAT--AACCCAAT-CGTATAGTACATGTACCAGTATTA-CTA-A--GGGTGT--CAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N-T-TTTCACTT-AT-AACTTA-TT-TGCAGA--TAAATG-AAATATC--GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGTAGTTTAACTT--TC-ATTACATGGT-TTTGC-TCA-AAT--TGTCAG-TGAAAA-TTAGTAATT-CGA-TTCAC--CACGA-----------A-C-----TCCAGTTCTT---AAC-AACAAAAAAATGTCCTT-TACATTTCAGC------AATTT--CGCAAATAGCAGCCCCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATT-GAAAAAAAAAATGGT-C-CAGGAATG--TTACATG-TATA-----GA---TCTAGTA---TGGTTT-T-A---TCTTTTGT---ATC-AAACTTATAAATATG--TATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTA--CCAG-GT---AT--ATATATTTT-CACATCA-------------CACGTGC----TT--TTTA--AAAAA-TAAAACTGA--ATAATCAGTAGTCTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA---ACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGAACGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGAAGAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAAAAAAAAAGTAAGTTGA-TGGTTAACAA-TATTCTGCATATAACATCCATA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAT-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATTT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-TGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTAGGT-TTTT--GTTTGTTT------GTTTG--------------ATTTT---AT--TGGGG--GGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAAGGGTA---ACAGAGTAATCCAAAATAA--AATTAAA--AATTTT-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A--TG--CTCCC-TAAGACAATTTtta
gi|5 : cAGTCTCAGA-GAAAAT-GAAAGTT-TTTTTTATTATTATTATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTAGTG-TAATCATAGTACATTGTATAAC--TTGGGTTTGAACGACAT-GTAAGTTGA-TGGTTAACA--T-TTCTGCATATAATTTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-AATAAG-ATTTGTACTTATTTTTAATGTCTTT-TTTTTTTCTCCAG-----CGG-CGG-TATCT--ATG---ACT-GAATGAATATCTTCAAAAATAGT-CGGCAT-GAAGAA-AGAC---T-TCT--TTTTTTTAATTTGGT-CTT
gi|5 : ------------TTTGGT-CTTCTCTATGTCC-CTTTC-TTTTTTCAA-ATATGCCGCCTTGTTCTTGGCTTT-GACTCTTTCTCGATAAGCTTTCTGT--C----TTTCAGCTCGTA--ATCTGGCCA-TCTAATGATATGTTCAGAGTAATC-------------------AATTTCGGCTTGAAATGTTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A--TG--CTCCC-TAAGACAATTctctatgtccctttcttttttcaaatatgccgccttgttcttggctttgactctttctcgataagctttctgtctttcagctcgtaatctggccatctaatgatatgttcagagtaatcaatttcggcttgaaatgttcgttaccaagaaatgaaagattcgttaccatgctccctaagacaattg
gi|8 : agtctcagagaaaatgaaagttttttttattattattattatttttgtgagcacttgtgacatgtatttagtgtaatcatagtacattgtataacttgggtttgaacgacatgtaagttgatggttaacatttctgcatataatttccgtatttagttgaaaataactatttgaataacaataagatttgtacttatttttaatgtcttttttttttctccagcggcggtatctatgactgaatgaatatcttcaaaaatagtcggcatgaagaaagacttcttttttttaaTAGTATGTAT-T-TAA-AA-CAA-TTTACACATGTAGATT-TAA-T-------ATG-TGCT-GC--A-AT--CTCCGAAATACACCGTCCAAA-GCAGCTAAAACTTCTTTTAAAATC--CAAAACAATTATTTATAAGTAA--TTT-AATC-TGGCATCA-T-CTG-CAT--AACCCTAT-Cg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTGGAACCAAGAAACTGCCCTTTCCACTTTTTTCTGACAACTTTACACTTTCCAGTATATATCATTTCCCCCTACAAACTATAGTATTTTCATCCGCAATTCACAAGCGCTTGGGTCTATAACTACAAAGGAGAATTTGAAGTATGGATTCTTGTTTTTGATGGCTGATTTGGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGAATGAGCCTTCTGGCTTTCGTACAAATCGAAGTAGTTTCAGATAAAACTTGGACGAGAGTTTCAGATAGCACATTAGTTTTTTTTAATTAGAGTAAATACGTGTCAAAAAATTGCAGTTTAATCTTAATTGATAATTATTTTTGTTTAAAAATAAAATGAAGGTGGCAGCATACGATGGCCGGTTACCCCAAGTGCCTTTGATTTAAAAAAAATTATTAAGCCCTACCTGCTACAGATAAAGAGTGAAATCATTCAGCATTTTTCTTCTTTCGACCAAATATCTGTTTCTTTTCTTCTTTCTTTTTTTTCTATTTAAAATCTAATCTTATTTGACTTTAAATCATTTAATTTTTTTTTTTTTTTTACCGCAAAACGATATGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTA
Unaligned ( gi|6 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAATCGAAGTGTTCAGATAAATCTTTGACTGAGAGTTCGATAGTTCTTCATTAGTTTTTTTAAATTAGAGTTAATACGTGTCAAAAAATTGCCGTTATCTAATTGATAATTATTTGTTTAAACAATAAATGAAGGTGGCAGCATACGAGTCCGTCTTACCCCAAGTGCCTTCATTTACAAAAATTTTTTTCAAACTGGGAATCATTCAGCTTTTCGACCAATATCTGTTTCTTTTCTTCTTTTTTTTTTTATGACTTTAAGTTTTAATTTTTTTTTTTTTTTTACCGCAACACGATATGGAAGCACTGCTTCCGTTGTTCATAGGAGCTAGCGCC
Unaligned ( gi|7 ): TATAGTTTCAGATAAAACCTGGACAGAGTTCAGAAGCACAATAGTTGTTATAACTAGAGTAAATACGTGTCAAAAAAATTGCAGTTAATCTGAATTATTTTTTGTTTAAAATATAATGAAGGGGGCGGCATACGATGACCGGTCTTACCCCAAGTGCCTTTGATTAAACAAAAAAAGATTTATATACATGTAGGCCTACCTGCTACAGATAAAGATGAAATCATTTAGCATTTTCAACCAAATTCTTTTTTTTCTACTTAAAATCTAATTTTATTTGACATTAAATCATTTATTTTATTTTTTTTTTTTTACCGCAAAACGATGTGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTACGCCAC
Unaligned ( gi|9 ): GAAGGGACGGGATACGATGTCCGTACTTACCGCCATGTACCTTTGCAAATTTAAATAGAATTTGATAAACATGATGAAATCATCAGCATTTATAATATAGTTATTTAAAATCTAAATTCTAGTTGACTTTAAAATTATTTTCTTCTTTTAAGCGCAACAATGTCATGACATGTGGAAGGTCACATGCTATCCGTGCTTTATATGATAGGCTACGCCA
Unaligned ( gi|17 ): CCTTTGATTTAAATAAAAAATTTACATATATTTACACACATGCTACAGATTAAGATGAAATCAT
Unaligned ( gi|19 ): TTTCTATTATGGTGCAGTATGTTTGTAAATGCATTATAATTCTTG
Unaligned ( gi|20 ): ATAATTATTGAATGTCTAGCGTTGAACATTTAATAGCACT
Unaligned ( gi|21 ): GAGAACACGCACGACTCGAAAGGTAAACTTGCAAATCT
Unaligned ( gi|22 ): TGTATGTACTAGTATGTATCTCTTCTGTCAGACAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 1111111 333333333333333333333333 1 1 1111 22 1 3333333 22222 1 111 11 1 22 1 111 1 1 222222 1 222 11 22222 1 1 1 1 1 11111 11 5555555555555555555555 1 1 9999999999999999999999999999 2222 1 1 1 222222 11 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 222 1 5555555555 222 2222222 222 1 111 22222 3333 111 33333 22 222 11 8888888888888 33333333 11 22 1 1 11 1 1 222 222 1 22 1 1111 111111 1 1 22222222 1 2222222 111 111 33333333 11 11 11 1 11 22 1 3333 1 1 1 11 1111 1 1111111 1 1 111 11 11 1 22 333333 88888888888888888888888888 555555555555 11 1 11 1 1 1 4444444 11 1 2 2222 44444444444 22 11 1 1 1 1 111 1 1111 11 1
lowQualScore : 5 5 4 4 4 11111 3 111 4 4 3333333 4 4 99 4 55 1 9999 8 2 999999999999999999999999 66 4 4 11 4 4 4 66 5 0 3 5 7 1 0 0 4444 55 3 7777777 00000 7 7 3 999 00 3 00 3 777 3 7 3 888888 3 333 88 77777 3 3 3 3 3 55555 7 88 6 6 8888888888888888888888 3 2 7 7 6 4444444444444444444444444444 6666 3 3 3 888888 88 1 5 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 1 000 7 3 4444444444 333 6666666 333 3 7 7 333 77777 0000 666 55555 7 55 7 333 7 7 44 6666666666666 33333333 7 88 7 00 1 3 3 88 3 3 555 333 3 00 6 6 3 7 7 6666 333333 0 3 2 0 33333333 0 8 8 8 6666666 111 3 444 1 8 0 22222222 11 5 11 6 55 2 7 1 6 3 8 11 0 88 11 22 8 9 3 0 1111 2 0 0 0 33 7777 0 0 2 4444444 0 3 0 2 111 33 3 33 1 0 00 888888 44444444444444444444444444 6 111111111111 6 22 0 33 0 8 5 0 3 2 3 2222222 33 0 3 0 0000 2 3 55 66666666666 00 33 0 0 0 0 777 0 9999 33 0
lowQualScore : . . . . . ..... . ... . . ....... . . .. . .. . .... . . ........................ .. . . .. . . . .. . . . . . . . . .... .. . ....... ..... . . . ... .. . .. . ... . . . ...... . ... .. ..... . . . . . ..... . .. . . ...................... . . . . . ............................ .... . . . ...... .. . . . ............................................................................................................................................. . . ... . . .......... ... ....... ... . . . ... ..... .... ... ..... . .. . ... . . .. ............. ........ . .. . .. . . . .. . . ... ... . .. . . . . . .... ...... . . . . ........ . . . . ....... ... . ... . . . ........ .. . .. . .. . . . . . . .. . .. .. .. . . . . .... . . . . .. .... . . . ....... . . . . ... .. . .. . . .. ...... .......................... . ............ . .. . .. . . . . . . . ....... .. . . . .... . . .. ........... .. .. . . . . ... . .... .. .
lowQualScore : 0 0 4 4 4 11111 9 000 0 0 0000000 0 0 55 0 55 0 4444 9 9 666666666666666666666666 11 4 4 22 4 4 4 11 0 1 3 2 5 0 8 0 8888 33 3 3333333 33333 3 3 3 000 33 3 00 3 777 3 3 3 333333 3 333 33 77777 3 3 3 3 3 33333 3 33 7 7 7777777777777777777777 3 0 3 3 7 3333333333333333333333333333 3333 3 3 3 000000 55 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 000 3 3 3333333333 333 0000000 333 3 3 3 000 77777 0000 777 77777 3 33 3 333 3 3 00 7777777777777 00000000 3 33 3 00 0 3 3 33 3 3 000 333 3 77 7 7 3 3 3 7777 888888 0 2 5 0 22222222 0 0 0 0 0000000 888 2 000 4 0 8 00000000 00 0 66 7 88 5 3 0 7 3 0 00 8 88 22 00 0 8 2 0 2222 5 0 0 0 88 8888 0 2 5 8888888 0 2 0 5 000 88 2 88 0 0 00 333333 33333333333333333333333333 7 222222222222 5 55 0 22 0 8 0 0 2 5 2 0000000 88 0 2 0 8888 5 2 00 22222222222 55 88 0 0 0 0 000 0 8888 88 0
consensus : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---AGT-TTTCACTC-GTTAACTTA-TT-TGCAGAGGTAAATG-AAATATCC-GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAACTTAGTAATTTCGAGTTCACACNACGA-----------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAAT-TCCTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGT---ATTAATATATTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA--CACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAAAGTAAGTTGA-TGGTTAACA--TATTCTGCATATAACNTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-CGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT---------ATTTT---GT--TGGGGGTGGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
Reference ( family-1929 ) : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---AGT-TTTCACTC-GTTAACTTA-TT-TGCAGAGGTAAATG-AAATATCC-GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAACTTAGTAATTTCGAGTTCACACNACGA-----------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAAT-TCCTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGT---ATTAATATATTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA--CACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAAAGTAAGTTGA-TGGTTAACA--TATTCTGCATATAACNTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-CGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT---------ATTTT---GT--TGGGGGTGGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
gi|1 : A-AGTCAA-T-----C-T---GATT-CAA-T-------ATA-TGCT-GC--A--T--CTCAAAATTAAA----CCAAAAGCAGCTATAACTTGTTTT--------TATAA-----------CAGCTA--TAT-AAAC-T----ACATC-CTG-CAT--AACACAATTCAGA-A-GACAT-TACCACTATTATCTA-AAAGAGTGTGACAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGTACAAATGTTTAATTCAATTAAC-TA-TTGGGCAGAGGTAAAGGAAAATATTC-GAGGTCCACGGAAATGC-T-TATTAATCAA-AT--GA-TTCATGCTGATATCACATATACCGATTGATCTCATAGGTATCTAAATTATCTATTTAAATGTTGCTTAAAGATGAAATATACAGTGT-GTTC--TTT--TCGATTA-AT------------ACAA-------AA-AAAAAATTAAGTAA-TTCGAGTTCA-ACGACGACGAGATATCCTAACAGTAATCCAGTTCTTCTTAAC-ACCAAAAAAAT-TCCTTATACATTTCAGCCGCGCAAATTTTTCGGAAATAG-AGCCGCC
gi|1 : aatagTTATATTTGAAAATAAAAATGGTGCGCAGGAGTGATTTACATG-TATACTAAGGAATGTTTCGTAAGTTGGTTTGTTAATGTTCTTTGTGAGATCTAAACTTA-AAATATGGTTATAATCAGTTTTGGGGAATGCGTTCCGTGGTAGTAGTG-GTAG-CCAGTGTTAGATTAGT----TTTTCACATCAAAAAAAGAGGTAGTACGTGTAAAGCTGTTTTATGAAAAAATAAACTTGA-GATGATCAGTAGCTTTTTC-AGGAATAAATCATTAACGTAGTTTCA-TATAGTCACATTTTAGCACAT-GAATGAATATTCGT----AAAGA-CGAA-----GAAGAAAAAAACCTGCCCAAAGTGTCTGCCCTGAAGTCT-GGA-AGAAATGGAAAGGTCTTTTCAA--A--A--ATT-ATTTTGTG-T-GAG-------CACTTGTGACA--T-TAAATTTTGGTG-TAAT-ATAGT--------TGAC--TTGGGTTTGAACAAAAAA-TAAGTTGATTGGTTAACA--TATTGTGCATAT-ACATTCATA-TTTAGTTTGAAA-ATGAATCTAT-TTGAATAAT--ATAAGAATTTGTACTATTTTTTAATGTCA-T-GTTT----TCCAGCGGACCGGACGG-TATTT--ATT---ACC-GTATGTATCTCTTCAAAATAAGCTTGGCAT-GATG-A-AGACGT-TGTCT--TTG-TT--GTTAGGTGTTTTG-ATTTGTTT------GTTTGGATTT---------ATT------------AGGTGGGGG------------TT-GTTGCTTCTCTATCTCC-CTTTC--TTCTTCAAGATAT-CCGCCTTGTTCTT-GCTTTATACTCCTTCTCGATAAGC-TTCTGTAAA----TTTCAGCTCGTGATATCTGGCCA-TCT-A-GGT----ACAGAGTAAT-CAAAATAAC-AT-TAAA--AATTTT-GCTTGAGATGGTCG--TTAC-CCA-AGA-ATGA-AAGA-GATT-GTTACTGA--TAATCTCCCATAAGAgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttattatatttgaaaataaaaatggtgcgcaggagtgatttacatgtatactaaggaatgtttcgtaagttggtttgttaatgttctttgtgagatctaaacttaaaatatggttataatcagttttggggaatgcgttccgtggtagtagtggtagccagtgttagattagtttttcacatcaaaaaaagaggtagtacgtgtaaagctgttttatgaaaaaataaacttgagatgatcagtagctttttcaggaataaatcattaacgtagtttcatatagtcacattttagcacatgaatgaatattcgtaaagacgaagaagaaaaaaacctgcccaaagtgtctgccctgaagtctggaagaaatggaaaggtcttttcaaaaattattttgtgtgagcacttgtgacattaaattttggtgtaatatagttgacttgggtttgaacaaaaaataagttgattggttaacatattgtgcatatacattcatatttagtttgaaaatgaatctatttgaataatataagaatttgtactattttttaatgtcatgttttccagcggaccggacggtatttattaccgtatgtatctcttcaaaataagcttggcatgatgaagacgttgtctttgttgttaggtgttttgatttgtttgtttggatttattaggtgggggttgttgcttctctatctccctttcttcttcaagatatccgccttgttcttgctttatactccttctcgataagcttctgtaaatttcagctcgtgatatctggccatctaggtacagagtaatcaaaataacattaaaaattttgcttgagatggtcgttacccaagaatgaaagagattgttactgataatctcccataaga
gi|10 : aatagaagtcaatctgattcaatatatgctgcatctcaaaattaaaccaaaagcagctataacttgtttttataacagctatataaactacatcctgcataacacaattcagaagacattaccactattatctaaaagagtgtgacaataatttttggtcttcgtgcacactctacgtagcaaacacaaccgtcaaaacatagtacaaatgtttaattcaattaactattgggcagaggtaaaggaaaatattcgaggtccacggaaatgcttattaatcaaatgattcatgctgatatcacatataccgattgatctcataggtatctaaattatctatttaaatgttgcttaaagatgaaatatacagtgtgttcttttcgattaatacaaaaaaaaaattaagtaattcgagttcaacgacgacgagatatcctaacagtaatccagttcttcttaacaccaaaaaaattccttatacatttcagccgcgcaaatttttcggaaatagagccgccgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttaTAGTATGTAT-CATAA-AA-CAA-T-----CGTA--GATT-CAA-T-------ATA-TGCC-GCAGA-AT--CTCAAAAATATA----C---A-ACAGCTAAAACTTCTTTT--------T-AAA-----------AAGCAACTTTT-AATC-TGGCAACA-C-CTG-GAT--AACCCAAT--ATATA-TA-ATCTA-CAGTA
gi|11 : agctgagtttcactgtaaattaccagtatgtgttttcttctgtatcagaccgcaaaatcacactcaTAGTATGTAT-C-TAA-AA-CAA-T-----CGT---GATT-CAA-T-------ATA-TGCC-GC--A-AT--CTCAAAAATATA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-GATATA-T--ATCTACGAGTAT
gi|12 : aactgagtttgccatgtatgtaccagtatgtgtttcttctgtcagaccgcaaaatcaactcaTAGATTAT-TGGTAAACA--TATT-TGCACAT-GCTTCCGTG-CTTCA-TAGAAAGATAA--C-AT-----ATAAC-----AG-ATTTTTA
gi|13 : actagaataaatacgtgtaaaataattgctgttactctaattgatgatcatttttgttttgaaaaaaaatatcaaggggcggaatgcaatgtccgatcttactccatgttattgtgcctttgattttagaTAGTATGTAT-C-TAA-AA-CAA-T-----CCC---GATT-CAA-T-------ATA-TGTT-GC--A-AT--CTCAAAAATAAA----CCAAA-GCAGCTAAAACTTTTTTT--------T--TA-----------AATCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--A
gi|14 : acaactgagtttgtcctgcatataccagtatgtatctcagtgttctgtcacacagcaaaatctactcctacaaatgAGTATGTAT-C-TAA-AT-CAAAT-----CCA---GATTTCAA-TCACATGTATA-TGCT-GCC-A-ATGTTTCAAAAACTTA----CCAA-------TAAACCTTCCTTTGGGTGTTTTAAAA-----------AAGCAA--TTTCAATC-TG--AACA-CGCTG-CAT--AACCACAT-CAT
gi|15 : tgtcagacagcaaacatatataacactcatcTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATAATGCT-GC--A-AT--CTCAAAAATTTA----TCAAA-GCAGCTAAA---------------------A-----------AAGCAA--TTT-AATC-TTGCAACA-C-CTG-CAT--AACCCAAT-CATATAGTACATGTATCAGTATTA-CTA-A--GGGTGT
gi|16 : acagcaaatatctactcaTTTT-TGAT-GAGTACAGCCCACTTGTGAC---TATG---TTTAGTA-CA--CATG--A-------TCA-----GGAATTGAACAAAAC-GTATCTTGA-TGCTTAACA---ATTCTGCATAGAATTTCTGTATTTTAG-Tca
gi|18 : tttttatttgtttattttctatT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCatttccgta
gi|2 : cttctgttagacagcaaactctactcttagaaGTATGCATTC-TAATAG-CAA-T-----CCT---GATT-CAAAT-------ATA-TGCTTGC--ACAT--CTCTTTTTTTTA----TCAAAAGCAGCTATAACTTAGTTC--------TTAAA-----------AAGC-A--TAT-AATCTTGACTACA-C-CTGCCATAAAACCCAAT-C-CGT--TATATTTACGAGTA-TA-CTACA--GGGTGTA-CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NGT-TTTCA--C-GTTAACTTACTT-T---GAGATAAATG-AAATATCCGGAGGTCT-CGGAAATGTGTGAGTAGCTTTTAACTAGACTTCATA--G-T-TCAC-TAT---GAAT--TCTCAT---T-TCT-AATTATCTA-TTAATT-TTGCTTAAA-ATGAAA-ATACA-T-T-GTTTAACTTCATCGATTACATGGTATT-GCTTCACAATGCT--CAGCTGAAAACTTAGTAATTTCGAGTTC-CACTCTCG-----------AAC-----TCCAGTTA--C-TAACAAACTAAAAAAT-CGCTT-TACATTTCAGC
gi|2 : tATTTACATGGTATA------A---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AT-CTTATAAATATGGT-ATA-T---TTTTG----AT-C-CTTCGCG-----AATGTGTAATCCAGTAT---ATTAATATATTTTT---ATCAT------------CACGTGC----CT--TT-A--AAATTATAAAACGGATGATAATCAGTAGCGTTTTCGAGGAATAT-CTAT--ACG-AGTATTAGTATA--CACATTTTG---CATAGAAAGCAAA--CGTCTAAAAA-A-CGAAAGAAAAAAAAAAAA---CTGCCCAAAGTTTTTG-----------------AAAGT-GTA-----TTCTCAA--A--A--ATTCATTTT-TG-TAGAG-------CATCTGTGACAGTTGTA---GTTTGTGCTAATCATAGTT-------TAACACTTGGGTTTGAA-AAAAAAGTAAGTTGA-TGGTTAACAAATATTCTGCATATAACATCCATA-TTTAGTTTGGAA-CTAA--CTATATTGAATAACTGAATAG-ATTTGTATTT----------TCATTATTTTG---TCCAGCGG-CCGG-CGGTTATCTTAATAGATACCGGAATGTAATTTTT------------GGCATCAAAGAAGAGACGTAT-TCCTGTTGTTT--GTTTAGT-TTTTGTGTTTGTTTTATTGGGTTTGGGTTTTTTACTTGAATTTTTGGGTGGTGGGGGTGGGGGGTGTCTTGGTGCTCCGTT--TTCTCTATCTCCGCTTTCGTTTCTTCAA-ATATCCCGCCTTGTCCTT-GCTTT-TAC-CCTT----------TTTCTGTC-ATACTTCTCAACTCGTA--ATCTGGCCACTCTAG-GGTA---ACA---T--TCCAAAATAAGCA--TAAAACAATTT--GCTGAGAATGGTGGTATTACTCAATGAAGATGAGAAGAGT-TCAGTTACCGATTTG--CTTCC-TATAACCATTTaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaatttacatggtataatctagtatggtttttatcttttgtatcatcttataaatatggtatatttttgatccttcgcgaatgtgtaatccagtatattaatatatttttatcatcacgtgcctttaaaattataaaacggatgataatcagtagcgttttcgaggaatatctatacgagtattagtatacacattttgcatagaaagcaaacgtctaaaaaacgaaagaaaaaaaaaaaactgcccaaagtttttgaaagtgtattctcaaaaattcatttttgtagagcatctgtgacagttgtagtttgtgctaatcatagtttaacacttgggtttgaaaaaaaagtaagttgatggttaacaaatattctgcatataacatccatatttagtttggaactaactatattgaataactgaatagatttgtattttcattattttgtccagcggccggcggttatcttaatagataccggaatgtaatttttggcatcaaagaagagacgtattcctgttgtttgtttagtttttgtgtttgttttattgggtttgggttttttacttgaatttttgggtggtgggggtggggggtgtcttggtgctccgttttctctatctccgctttcgtttcttcaaatatcccgccttgtccttgcttttaccctttttctgtcatacttctcaactcgtaatctggccactctagggtaacattccaaaataagcataaaacaatttgctgagaatggtggtattactcaatgaagatgagaagagttcagttaccgatttgcttcctataaccattttta
gi|3 : tgtatgcattctaatagcaatcctgattcaaatatatgcttgcacatctcttttttttatcaaaagcagctataacttagttcttaaaaagcatataatcttgactacacctgccataaaacccaatccgttatatttacgagtatactacagggtgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttcacgttaacttactttgagataaatgaaatatccggaggtctcggaaatgtgtgagtagcttttaactagacttcatagttcactatgaattctcatttctaattatctattaattttgcttaaaatgaaaatacattgtttaacttcatcgattacatggtattgcttcacaatgctcagctgaaaacttagtaatttcgagttccactctcgaactccagttactaacaaactaaaaaatcgctttacatttcagcaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaTGGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCTAAAATTTA----TCAAA-GCAGCTATAACTTGTTTT--------TAAAA-----------AAGCAA--TAT-AATC-TTGCTACA-C-CTG-CAT--AACCCAAT-CGTATAGTACATGTACCAGTATTA-CTA-A--GGGTGT--CAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N-T-TTTCACTT-AT-AACTTA-TT-TGCAGA--TAAATG-AAATATC--GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGTAGTTTAACTT--TC-ATTACATGGT-TTTGC-TCA-AAT--TGTCAG-TGAAAA-TTAGTAATT-CGA-TTCAC--CACGA-----------A-C-----TCCAGTTCTT---AAC-AACAAAAAAATGTCCTT-TACATTTCAGC------AATTT--CGCAAATAGCAGCCCCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATT-GAAAAAAAAAATGGT-C-CAGGAATG--TTACATG-TATA-----GA---TCTAGTA---TGGTTT-T-A---TCTTTTGT---ATC-AAACTTATAAATATG--TATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTA--CCAG-GT---AT--ATATATTTT-CACATCA-------------CACGTGC----TT--TTTA--AAAAA-TAAAACTGA--ATAATCAGTAGTCTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA---ACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGAACGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGAAGAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAAAAAAAAAGTAAGTTGA-TGGTTAACAA-TATTCTGCATATAACATCCATA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAT-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATTT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-TGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTAGGT-TTTT--GTTTGTTT------GTTTG--------------ATTTT---AT--TGGGG--GGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAAGGGTA---ACAGAGTAATCCAAAATAA--AATTAAA--AATTTT-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A--TG--CTCCC-TAAGACAATTTtta
gi|5 : cAGTCTCAGA-GAAAAT-GAAAGTT-TTTTTTATTATTATTATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTAGTG-TAATCATAGTACATTGTATAAC--TTGGGTTTGAACGACAT-GTAAGTTGA-TGGTTAACA--T-TTCTGCATATAATTTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-AATAAG-ATTTGTACTTATTTTTAATGTCTTT-TTTTTTTCTCCAG-----CGG-CGG-TATCT--ATG---ACT-GAATGAATATCTTCAAAAATAGT-CGGCAT-GAAGAA-AGAC---T-TCT--TTTTTTTAATTTGGT-CTT
gi|5 : ------------TTTGGT-CTTCTCTATGTCC-CTTTC-TTTTTTCAA-ATATGCCGCCTTGTTCTTGGCTTT-GACTCTTTCTCGATAAGCTTTCTGT--C----TTTCAGCTCGTA--ATCTGGCCA-TCTAATGATATGTTCAGAGTAATC-------------------AATTTCGGCTTGAAATGTTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A--TG--CTCCC-TAAGACAATTctctatgtccctttcttttttcaaatatgccgccttgttcttggctttgactctttctcgataagctttctgtctttcagctcgtaatctggccatctaatgatatgttcagagtaatcaatttcggcttgaaatgttcgttaccaagaaatgaaagattcgttaccatgctccctaagacaattg
gi|8 : agtctcagagaaaatgaaagttttttttattattattattatttttgtgagcacttgtgacatgtatttagtgtaatcatagtacattgtataacttgggtttgaacgacatgtaagttgatggttaacatttctgcatataatttccgtatttagttgaaaataactatttgaataacaataagatttgtacttatttttaatgtcttttttttttctccagcggcggtatctatgactgaatgaatatcttcaaaaatagtcggcatgaagaaagacttcttttttttaaTAGTATGTAT-T-TAA-AA-CAA-TTTACACATGTAGATT-TAA-T-------ATG-TGCT-GC--A-AT--CTCCGAAATACACCGTCCAAA-GCAGCTAAAACTTCTTTTAAAATC--CAAAACAATTATTTATAAGTAA--TTT-AATC-TGGCATCA-T-CTG-CAT--AACCCTAT-Cg
blockSeqs : T . T . A TTACA G GTA T A CACATGT A T AG C GT A CCGT A C AAAATCCAAAACAATTATTTAT CT C T GG . G C AA . G C C C . CA A N NGT CTTA T T C TG GA . CG . GTG A T C TGT . . . T . . . . . TGTA A CA G C GGTATTGCTTCACAATGCT C C T T G CACTCTCGAAC TT A G . . . C C C . A C A G GA . TTA . . A T GT T G C T T AT T . T A T T CT T . A TG G G . . . G C . A T C G A A A CCC GGAAG . A G . TTATTATT C . A A TACAGCC AGT A . A C ACATTGTA AC C AA . AA C A T T T G . AT TG AT . A T A TTTC C . . T TA AGAT G C ATAGCT C A G G AT TG T TA T . GT TATTGG GGTTTTTTACTTGAATTTTTGGGTGG G GTGTCTTGGTGC C C G GT . C G . T C T CATACT . C A G ATGT G A CC GCATAAAAC CG TA T T G G GT A GATT . .
blockSeqs : . . . . . . G A . . . . . C . . A . . C GGGTGTTTTAAAA . . . GG . . . . . G T C T . A . . NT CG . T . T . . . . T . T . GT . . . T . . . . . TT A . . C GGTTTTGCTCAAATTGT . . T . . ACCACGAAC C . . . . . A . TA . . . T T T . C . T . . . . A C . TT . . . . C . . . . . . . . . C . . A . . CAGAG . A T . AA . . . . . A G . T . A . A AA . A C A T . . . . T G TA . A T . G C . . . . G . C ATAGTC . A . G T . T . A . . . ATTTTAT . . C C . T . C G . T C T A . . A T A G A CC AATTAAA T . . . . . T . A . .
blockSeqs : . . . . . . C . . . . . . . . . A . . T TAAAA . . . GG . . . . . . C G C . A . . . . . AA . . . . . A G . G . T . C C . . C A A . . . . T A TA . . T . . . . . . . G . . . . A . . T . T . T . . T . . T . G . . . . T C . . A . A . . C . . . . . . . T . A . .
blockSeqs : . . . . . . C . . . . . . . . . T . . C TTAAA . . . TG . . . . . . . T C . . . . . G . A . A . . T . . C A A . . . . . . . .
blockSeqs : . . . . . . C . . . . . . . . . T . . A TAAAA . . . GA . . . . . . . G . . . . . T . .
blockSeqs : . . . . . . C . . . . . . . . . T . . G TAAA . . . TG . . . . .
blockSeqs : . . . . . . C . . . . . . . . . T . . C TTA . . . GG . . . . .
blockSeqs : . . . . A . . . . . . . . . A . . . A . . . G . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : GG *** A******* N* ** G*
originalCons : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---AGT-TTTCACTC-GTTAACTTA-TT-TGCAGAGGTAAATG-AAATATCC-GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAACTTAGTAATTTCGAGTTCACACNACGA-----------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAAT-TCCTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGT---ATTAATATATTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA--CACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAAAGTAAGTTGA-TGGTTAACA--TATTCTGCATATAACNTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAAC-GATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-CGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT---------ATTTT---GT--TGGGGGTGGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
finalCons : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---AGT-TTTCACTC-GTTAACTTA-TT-TGCAGAGGTAAATG-AAATATCC-GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAACTTAGTAATTTCGAGTTCACACNACGA-----------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAAT-TCCTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGT---ATTAATATATTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA--CACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAAT-GAAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAN-GTAAGTTGA-TGGTTAACA--TATTCTGCATATAACNTCCGTA-TTTAG-TTGAAA-ATAA--CTAT-TTGAATAACG-ATAAG-ATTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGC-CGGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT---------ATTTT---GT--TGGGGGTGGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTGGAACCAAGAAACTGCCCTTTCCACTTTTTTCTGACAACTTTACACTTTCCAGTATATATCATTTCCCCCTACAAACTATAGTATTTTCATCCGCAATTCACAAGCGCTTGGGTCTATAACTACAAAGGAGAATTTGAAGTATGGATTCTTGTTTTTGATGGCTGATTTGGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGAATGAGCCTTCTGGCTTTCGTACAAATCGAAGTAGTTTCAGATAAAACTTGGACGAGAGTTTCAGATAGCACATTAGTTTTTTTTAATTAGAGTAAATACGTGTCAAAAAATTGCAGTTTAATCTTAATTGATAATTATTTTTGTTTAAAAATAAAATGAAGGTGGCAGCATACGATGGCCGGTTACCCCAAGTGCCTTTGATTTAAAAAAAATTATTAAGCCCTACCTGCTACAGATAAAGAGTGAAATCATTCAGCATTTTTCTTCTTTCGACCAAATATCTGTTTCTTTTCTTCTTTCTTTTTTTTCTATTTAAAATCTAATCTTATTTGACTTTAAATCATTTAATTTTTTTTTTTTTTTTACCGCAAAACGATATGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTA
Unaligned ( gi|6 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAATCGAAGTGTTCAGATAAATCTTTGACTGAGAGTTCGATAGTTCTTCATTAGTTTTTTTAAATTAGAGTTAATACGTGTCAAAAAATTGCCGTTATCTAATTGATAATTATTTGTTTAAACAATAAATGAAGGTGGCAGCATACGAGTCCGTCTTACCCCAAGTGCCTTCATTTACAAAAATTTTTTTCAAACTGGGAATCATTCAGCTTTTCGACCAATATCTGTTTCTTTTCTTCTTTTTTTTTTTATGACTTTAAGTTTTAATTTTTTTTTTTTTTTTACCGCAACACGATATGGAAGCACTGCTTCCGTTGTTCATAGGAGCTAGCGCC
Unaligned ( gi|7 ): TATAGTTTCAGATAAAACCTGGACAGAGTTCAGAAGCACAATAGTTGTTATAACTAGAGTAAATACGTGTCAAAAAAATTGCAGTTAATCTGAATTATTTTTTGTTTAAAATATAATGAAGGGGGCGGCATACGATGACCGGTCTTACCCCAAGTGCCTTTGATTAAACAAAAAAAGATTTATATACATGTAGGCCTACCTGCTACAGATAAAGATGAAATCATTTAGCATTTTCAACCAAATTCTTTTTTTTCTACTTAAAATCTAATTTTATTTGACATTAAATCATTTATTTTATTTTTTTTTTTTTACCGCAAAACGATGTGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTACGCCAC
Unaligned ( gi|9 ): GAAGGGACGGGATACGATGTCCGTACTTACCGCCATGTACCTTTGCAAATTTAAATAGAATTTGATAAACATGATGAAATCATCAGCATTTATAATATAGTTATTTAAAATCTAAATTCTAGTTGACTTTAAAATTATTTTCTTCTTTTAAGCGCAACAATGTCATGACATGTGGAAGGTCACATGCTATCCGTGCTTTATATGATAGGCTACGCCA
Unaligned ( gi|17 ): CCTTTGATTTAAATAAAAAATTTACATATATTTACACACATGCTACAGATTAAGATGAAATCAT
Unaligned ( gi|19 ): TTTCTATTATGGTGCAGTATGTTTGTAAATGCATTATAATTCTTG
Unaligned ( gi|20 ): ATAATTATTGAATGTCTAGCGTTGAACATTTAATAGCACT
Unaligned ( gi|21 ): GAGAACACGCACGACTCGAAAGGTAAACTTGCAAATCT
Unaligned ( gi|22 ): TGTATGTACTAGTATGTATCTCTTCTGTCAGACAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11111 111 1111111 333333333333333333333333 1 1 1111 22 1 3333333 22222 1 111 11 1 22 1 111 1 1 222222 1 222 11 22222 1 1 1 1 1 11111 11 5555555555555555555555 1 1 9999999999999999999999999999 2222 1 1 1 222222 11 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 222 1 5555555555 222 2222222 222 1 111 22222 3333 111 33333 22 222 11 8888888888888 33333333 11 22 1 1 11 1 1 222 222 1 22 1 1111 111111 1 1 22222222 1 2222222 111 111 33333333 11 11 22 1 33333 1 1 1 11 1111 1 1111111 1 11 111 11 111 1 22 333333 88888888888888888888888888 555555555555 11 1 1 1 1 4444444 11 1 2 2222 44444444444 22 11 1 1 1 1 111 1 1111 11 1
lowQualScore : 5 5 4 4 4 11111 3 111 4 4 3333333 4 4 99 4 55 1 9999 8 2 999999999999999999999999 66 4 4 11 4 4 4 66 5 0 3 5 7 1 0 0 4444 55 3 7777777 00000 7 7 3 999 00 3 00 3 777 3 7 3 888888 3 333 88 77777 3 3 3 3 3 55555 7 88 6 6 8888888888888888888888 3 2 7 7 6 4444444444444444444444444444 6666 3 3 3 888888 88 1 5 1 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 1 000 7 3 4444444444 333 6666666 333 3 7 7 333 77777 0000 666 55555 7 55 7 333 7 7 44 6666666666666 33333333 7 88 7 00 1 3 3 88 3 3 555 333 3 00 6 6 3 7 7 6666 333333 0 3 2 0 33333333 0 8 8 8 6666666 111 3 444 1 8 0 22222222 11 77 6 99 6 2 1 1 6 6 8 8 11 0 88 11 22 8 9 0 44444 2 0 0 0 33 7777 0 0 2 4444444 0 33 2 111 33 777 1 0 00 888888 44444444444444444444444444 6 111111111111 6 22 0 0 3 0 2 55 0 3 2 3 2222222 33 0 3 0 0000 2 3 55 66666666666 00 33 0 0 0 0 777 0 9999 33 0
lowQualScore : . . . . . ..... . ... . . ....... . . .. . .. . .... . . ........................ .. . . .. . . . .. . . . . . . . . .... .. . ....... ..... . . . ... .. . .. . ... . . . ...... . ... .. ..... . . . . . ..... . .. . . ...................... . . . . . ............................ .... . . . ...... .. . . . ............................................................................................................................................. . . ... . . .......... ... ....... ... . . . ... ..... .... ... ..... . .. . ... . . .. ............. ........ . .. . .. . . . .. . . ... ... . .. . . . . . .... ...... . . . . ........ . . . . ....... ... . ... . . . ........ .. .. . .. . . . . . . . . .. . .. .. .. . . . ..... . . . . .. .... . . . ....... . .. . ... .. ... . . .. ...... .......................... . ............ . .. . . . . . .. . . . . ....... .. . . . .... . . .. ........... .. .. . . . . ... . .... .. .
lowQualScore : 0 0 4 4 4 11111 9 000 0 0 0000000 0 0 55 0 55 0 4444 9 9 666666666666666666666666 11 4 4 22 4 4 4 11 0 1 3 2 5 0 8 0 8888 33 3 3333333 33333 3 3 3 000 33 3 00 3 777 3 3 3 333333 3 333 33 77777 3 3 3 3 3 33333 3 33 7 7 7777777777777777777777 3 0 3 3 7 3333333333333333333333333333 3333 3 3 3 000000 55 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 000 3 3 3333333333 333 0000000 333 3 3 3 000 77777 0000 777 77777 3 33 3 333 3 3 00 7777777777777 00000000 3 33 3 00 0 3 3 33 3 3 000 333 3 77 7 7 3 3 3 7777 888888 0 2 5 0 22222222 0 0 0 0 0000000 888 2 000 4 0 8 00000000 00 77 7 22 7 5 7 0 7 7 0 0 00 8 88 22 00 0 8 0 55555 5 0 0 0 88 8888 0 2 5 8888888 0 22 5 000 88 000 0 0 00 333333 33333333333333333333333333 7 222222222222 5 55 0 0 2 0 5 00 0 2 5 2 0000000 88 0 2 0 8888 5 2 00 22222222222 55 88 0 0 0 0 000 0 8888 88 0
consensus : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---AGT-TTTCACTC-GTTAACTTA-TT-TGCAGAGGTAAATG-AAATATCC-GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAACTTAGTAATTTCGAGTTCACACNACGA-----------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAAT-TCCTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGT---ATTAATATATTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA--CACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAATG-AAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAN-GTAAGTTGAT-GGTTAAC--A-TATTCTGCATATAACNTCCGTA-TTTAG-TT-GAAA-ATAA--CTAT-TTGAATAAC-GATAAGA-TTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGCC-GGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT---------ATTTT---GT--TGGGGGTGGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
Reference ( family-1929 ) : NTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCAAAAATNTA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-CATATA-TACATNTACCAGTATTA-CTA-A--GGGTGTG-CAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGT---AGT-TTTCACTC-GTTAACTTA-TT-TGCAGAGGTAAATG-AAATATCC-GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGT-GTTTAACTT--TCGATTACATGGT-TT-GC-TCACAAT--T--CAG-TGAAAACTTAGTAATTTCGAGTTCACACNACGA-----------AAC-----TCCAGTTCTTC-TAAC-AACAAAAAAAT-TCCTT-TACATTTCAGCCGCGCAAATTTTTCGNAAATAGCAGCCNCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATTTGAAAANAAAAATGGTGCGCAGGAGTGATTTACATG-TATA-----GA---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AAACTTATAAATATGGTTATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTAG-CCAGTGT---ATTAATATATTTTTCACATCA-------------CACGTGC----CT--TTTA--AAAAAATAAAACTGA-GATAATCAGTAGCNTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA--CACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGA-CGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGA-GAAAATG-AAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAACAAAAN-GTAAGTTGAT-GGTTAAC--A-TATTCTGCATATAACNTCCGTA-TTTAG-TT-GAAA-ATAA--CTAT-TTGAATAAC-GATAAGA-TTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATCT--ATG---ACC-GAATGTATCTCTTCAAAAATAGCC-GGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTNGGT-TTTTG-GTTTGTTT------GTTTGGGTTT---------ATTTT---GT--TGGGGGTGGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAA-GGTA---ACAGAGTAATCCAAAATAA--A--TAAA--AATTTC-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACCGA--TG--CTCCC-TAAGACAATTT
gi|1 : A-AGTCAA-T-----C-T---GATT-CAA-T-------ATA-TGCT-GC--A--T--CTCAAAATTAAA----CCAAAAGCAGCTATAACTTGTTTT--------TATAA-----------CAGCTA--TAT-AAAC-T----ACATC-CTG-CAT--AACACAATTCAGA-A-GACAT-TACCACTATTATCTA-AAAGAGTGTGACAAT-AATTTTTGGTCTTCGTGCACACTCTACGTAGCAAACACAACCGTCAAAACATAGTACAAATGTTTAATTCAATTAAC-TA-TTGGGCAGAGGTAAAGGAAAATATTC-GAGGTCCACGGAAATGC-T-TATTAATCAA-AT--GA-TTCATGCTGATATCACATATACCGATTGATCTCATAGGTATCTAAATTATCTATTTAAATGTTGCTTAAAGATGAAATATACAGTGT-GTTC--TTT--TCGATTA-AT------------ACAA-------AA-AAAAAATTAAGTAA-TTCGAGTTCA-ACGACGACGAGATATCCTAACAGTAATCCAGTTCTTCTTAAC-ACCAAAAAAAT-TCCTTATACATTTCAGCCGCGCAAATTTTTCGGAAATAG-AGCCGCC
gi|1 : aatagTTATATTTGAAAATAAAAATGGTGCGCAGGAGTGATTTACATG-TATACTAAGGAATGTTTCGTAAGTTGGTTTGTTAATGTTCTTTGTGAGATCTAAACTTA-AAATATGGTTATAATCAGTTTTGGGGAATGCGTTCCGTGGTAGTAGTG-GTAG-CCAGTGTTAGATTAGT----TTTTCACATCAAAAAAAGAGGTAGTACGTGTAAAGCTGTTTTATGAAAAAATAAACTTGA-GATGATCAGTAGCTTTTTC-AGGAATAAATCATTAACGTAGTTTCA-TATAGTCACATTTTAGCACAT-GAATGAATATTCGT----AAAGA-CGAA-----GAAGAAAAAAACCTGCCCAAAGTGTCTGCCCTGAAGTCT-GGA-AGAAATGGAAAGGTCTTTTCAA--A--A--ATT-ATTTTGTG-T-GAG-------CACTTGTGACA--T-TAAATTTTGGTG-TAAT-ATAGT--------TGAC--TTGGGTTTGAACAAAAA-ATAAGTTGATTGGTTAAC--A-TATTGTGCATATA-CATTCATA-TTTAG-TTTGAAA-ATGAATCTAT-TTGAATAAT--ATAAGAATTTGTACTATTTTTTAATGTCATG-TTTT-----CCAGCGGACCGGACGG-TATTT--ATT---ACC-GTATGTATCTCTTCAAAATAAGCTTGGCAT-GATGAA--GACGT-TGTCT--TTGTT---GTTAGGTGTTTTG-ATTTGTTT------GTTTGGATTT---------ATT------------AGGTGGGGG------------TT-GTTGCTTCTCTATCTCC-CTTTC-TT-CTTCAAGATATCC-GCCTTGTTCTTG-CTTTATACTCCTTCTCGATAAGC-TTCTGTAAA----TTTCAGCTCGTGATATCTGGCCA-TCT-A-GGT----ACAGAGTAAT-CAAAATAAC-AT-TAAA--AATTTT-GCTTGAGATGGTCG--TTAC-CCA-AGA-ATGA-AAGA-GATT-GTTACTGA--TAATCTCCCATAAGAgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttattatatttgaaaataaaaatggtgcgcaggagtgatttacatgtatactaaggaatgtttcgtaagttggtttgttaatgttctttgtgagatctaaacttaaaatatggttataatcagttttggggaatgcgttccgtggtagtagtggtagccagtgttagattagtttttcacatcaaaaaaagaggtagtacgtgtaaagctgttttatgaaaaaataaacttgagatgatcagtagctttttcaggaataaatcattaacgtagtttcatatagtcacattttagcacatgaatgaatattcgtaaagacgaagaagaaaaaaacctgcccaaagtgtctgccctgaagtctggaagaaatggaaaggtcttttcaaaaattattttgtgtgagcacttgtgacattaaattttggtgtaatatagttgacttgggtttgaacaaaaaataagttgattggttaacatattgtgcatatacattcatatttagtttgaaaatgaatctatttgaataatataagaatttgtactattttttaatgtcatgttttccagcggaccggacggtatttattaccgtatgtatctcttcaaaataagcttggcatgatgaagacgttgtctttgttgttaggtgttttgatttgtttgtttggatttattaggtgggggttgttgcttctctatctccctttcttcttcaagatatccgccttgttcttgctttatactccttctcgataagcttctgtaaatttcagctcgtgatatctggccatctaggtacagagtaatcaaaataacattaaaaattttgcttgagatggtcgttacccaagaatgaaagagattgttactgataatctcccataaga
gi|10 : aatagaagtcaatctgattcaatatatgctgcatctcaaaattaaaccaaaagcagctataacttgtttttataacagctatataaactacatcctgcataacacaattcagaagacattaccactattatctaaaagagtgtgacaataatttttggtcttcgtgcacactctacgtagcaaacacaaccgtcaaaacatagtacaaatgtttaattcaattaactattgggcagaggtaaaggaaaatattcgaggtccacggaaatgcttattaatcaaatgattcatgctgatatcacatataccgattgatctcataggtatctaaattatctatttaaatgttgcttaaagatgaaatatacagtgtgttcttttcgattaatacaaaaaaaaaattaagtaattcgagttcaacgacgacgagatatcctaacagtaatccagttcttcttaacaccaaaaaaattccttatacatttcagccgcgcaaatttttcggaaatagagccgccgcctccacaaattagattataaaataaaatgtttttgtttcgtggttataaaatttgcataaactagtgttattgacaacttgtatttttatttatttaattatgttcgtgttgattattgttctctagcaaacgttatatttatctgctttaTAGTATGTAT-CATAA-AA-CAA-T-----CGTA--GATT-CAA-T-------ATA-TGCC-GCAGA-AT--CTCAAAAATATA----C---A-ACAGCTAAAACTTCTTTT--------T-AAA-----------AAGCAACTTTT-AATC-TGGCAACA-C-CTG-GAT--AACCCAAT--ATATA-TA-ATCTA-CAGTA
gi|11 : agctgagtttcactgtaaattaccagtatgtgttttcttctgtatcagaccgcaaaatcacactcaTAGTATGTAT-C-TAA-AA-CAA-T-----CGT---GATT-CAA-T-------ATA-TGCC-GC--A-AT--CTCAAAAATATA----CCAAA-GCAGCTAAAACTTCTTTT--------TAAAA-----------AAGCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--AACCCAAT-GATATA-T--ATCTACGAGTAT
gi|12 : aactgagtttgccatgtatgtaccagtatgtgtttcttctgtcagaccgcaaaatcaactcaAG-ATAGATTATT-GGTAAAC--A-TATT-TGCACAT-GCTTCCGTG-CTTCA-TA-GAAAGATAA--C-AT-----ATAAC-----AGA-TTTTTA
gi|13 : actagaataaatacgtgtaaaataattgctgttactctaattgatgatcatttttgttttgaaaaaaaatatcaaggggcggaatgcaatgtccgatcttactccatgttattgtgcctttgattttTAGTATGTAT-C-TAA-AA-CAA-T-----CCC---GATT-CAA-T-------ATA-TGTT-GC--A-AT--CTCAAAAATAAA----CCAAA-GCAGCTAAAACTTTTTTT--------T--TA-----------AATCAA--TTT-AATC-TGGCAACA-C-CTG-CAT--A
gi|14 : acaactgagtttgtcctgcatataccagtatgtatctcagtgttctgtcacacagcaaaatctactcctacaaatgAGTATGTAT-C-TAA-AT-CAAAT-----CCA---GATTTCAA-TCACATGTATA-TGCT-GCC-A-ATGTTTCAAAAACTTA----CCAA-------TAAACCTTCCTTTGGGTGTTTTAAAA-----------AAGCAA--TTTCAATC-TG--AACA-CGCTG-CAT--AACCACAT-CAT
gi|15 : tgtcagacagcaaacatatataacactcatcTAGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATAATGCT-GC--A-AT--CTCAAAAATTTA----TCAAA-GCAGCTAAA---------------------A-----------AAGCAA--TTT-AATC-TTGCAACA-C-CTG-CAT--AACCCAAT-CATATAGTACATGTATCAGTATTA-CTA-A--GGGTGT
gi|16 : acagcaaatatctactcaTTTT-TGAT-GAGTACAGCCCACTTGTGAC---TATG---TTTAGTA-CA--CATG--A-------TCA-----GGAATTGAACAAAAC-GTATCTTGAT-GCTTAAC--A--ATTCTGCATAGAATTTCTGTATTTTAG-Tca
gi|18 : tttttatttgtttattttctatT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCatttccgta
gi|2 : cttctgttagacagcaaactctactcttagaaGTATGCATTC-TAATAG-CAA-T-----CCT---GATT-CAAAT-------ATA-TGCTTGC--ACAT--CTCTTTTTTTTA----TCAAAAGCAGCTATAACTTAGTTC--------TTAAA-----------AAGC-A--TAT-AATCTTGACTACA-C-CTGCCATAAAACCCAAT-C-CGT--TATATTTACGAGTA-TA-CTACA--GGGTGTA-CAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NGT-TTTCA--C-GTTAACTTACTT-T---GAGATAAATG-AAATATCCGGAGGTCT-CGGAAATGTGTGAGTAGCTTTTAACTAGACTTCATA--G-T-TCAC-TAT---GAAT--TCTCAT---T-TCT-AATTATCTA-TTAATT-TTGCTTAAA-ATGAAA-ATACA-T-T-GTTTAACTTCATCGATTACATGGTATT-GCTTCACAATGCT--CAGCTGAAAACTTAGTAATTTCGAGTTC-CACTCTCG-----------AAC-----TCCAGTTA--C-TAACAAACTAAAAAAT-CGCTT-TACATTTCAGC
gi|2 : tATTTACATGGTATA------A---TCTAGTA---TGGTTT-TTA---TCTTTTGT---ATC-AT-CTTATAAATATGGT-ATA-T---TTTTG----AT-C-CTTCGCG-----AATGTGTAATCCAGTAT---ATTAATATATTTTT---ATCAT------------CACGTGC----CT--TT-A--AAATTATAAAACGGATGATAATCAGTAGCGTTTTCGAGGAATAT-CTAT--ACG-AGTATTAGTATA--CACATTTTG---CATAGAAAGCAAA--CGTCTAAAAA-A-CGAAAGAAAAAAAAAAAA---CTGCCCAAAGTTTTTG-----------------AAAGTG-TA-----TTCTCAA--A--A--ATTCATTTT-TG-TAGAG-------CATCTGTGACAGTTGTA---GTTTGTGCTAATCATAGTT-------TAACACTTGGGTTTGAAAAAAAA-GTAAGTTGAT-GGTTAACAAA-TATTCTGCATATAACATCCATA-TTTAGTTT-GGAA-CTAA--CTATATTGAATAACTGAATAGA-TTTGTATTT----------TCATTATTTTG---TCCAGCGG-CCGG-CGGTTATCTTAATAGATACCGGAATGTAATTTTT------------GGCATCAAAGAAGAGACGTAT-TCCTGTTGTTT--GTTTAGT-TTTTGTGTTTGTTTTATTGGGTTTGGGTTTTTTACTTGAATTTTTGGGTGGTGGGGGTGGGGGGTGTCTTGGTGCTCCGTT--TTCTCTATCTCCGCTTTCGTTTCTTCAA-ATATCCCGCCTTGTCCTT-GCTTT-TAC-CCTT----------TTTCTGTC-ATACTTCTCAACTCGTA--ATCTGGCCACTCTAG-GGTA---ACA---T--TCCAAAATAAGCA--TAAAACAATTT--GCTGAGAATGGTGGTATTACTCAATGAAGATGAGAAGAGT-TCAGTTACCGATTTG--CTTCC-TATAACCATTTaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaatttacatggtataatctagtatggtttttatcttttgtatcatcttataaatatggtatatttttgatccttcgcgaatgtgtaatccagtatattaatatatttttatcatcacgtgcctttaaaattataaaacggatgataatcagtagcgttttcgaggaatatctatacgagtattagtatacacattttgcatagaaagcaaacgtctaaaaaacgaaagaaaaaaaaaaaactgcccaaagtttttgaaagtgtattctcaaaaattcatttttgtagagcatctgtgacagttgtagtttgtgctaatcatagtttaacacttgggtttgaaaaaaaagtaagttgatggttaacaaatattctgcatataacatccatatttagtttggaactaactatattgaataactgaatagatttgtattttcattattttgtccagcggccggcggttatcttaatagataccggaatgtaatttttggcatcaaagaagagacgtattcctgttgtttgtttagtttttgtgtttgttttattgggtttgggttttttacttgaatttttgggtggtgggggtggggggtgtcttggtgctccgttttctctatctccgctttcgtttcttcaaatatcccgccttgtccttgcttttaccctttttctgtcatacttctcaactcgtaatctggccactctagggtaacattccaaaataagcataaaacaatttgctgagaatggtggtattactcaatgaagatgagaagagttcagttaccgatttgcttcctataaccattttta
gi|3 : tgtatgcattctaatagcaatcctgattcaaatatatgcttgcacatctcttttttttatcaaaagcagctataacttagttcttaaaaagcatataatcttgactacacctgccataaaacccaatccgttatatttacgagtatactacagggtgtacaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttttcacgttaacttactttgagataaatgaaatatccggaggtctcggaaatgtgtgagtagcttttaactagacttcatagttcactatgaattctcatttctaattatctattaattttgcttaaaatgaaaatacattgtttaacttcatcgattacatggtattgcttcacaatgctcagctgaaaacttagtaatttcgagttccactctcgaactccagttactaacaaactaaaaaatcgctttacatttcagcaatttcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagttatatattgaaataattccagaTGGTATGTAT-C-TAA-AG-CAA-T-----CCT---GATT-CAA-T-------ATA-TGCT-GC--A-AT--CTCTAAAATTTA----TCAAA-GCAGCTATAACTTGTTTT--------TAAAA-----------AAGCAA--TAT-AATC-TTGCTACA-C-CTG-CAT--AACCCAAT-CGTATAGTACATGTACCAGTATTA-CTA-A--GGGTGT--CAAT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---N-T-TTTCACTT-AT-AACTTA-TT-TGCAGA--TAAATG-AAATATC--GAGGTCT-CGGAAATGT-T-AGTTACTCAT-ATTAGA-TTCATA-TG-T-TCAC-TAT---GATT--TCTCAT---T-TCT-AATTATCTA-TTAAAT-TTGCTTAAA-ATGAAA-ATACA-TGTAGTTTAACTT--TC-ATTACATGGT-TTTGC-TCA-AAT--TGTCAG-TGAAAA-TTAGTAATT-CGA-TTCAC--CACGA-----------A-C-----TCCAGTTCTT---AAC-AACAAAAAAATGTCCTT-TACATTTCAGC------AATTT--CGCAAATAGCAGCCCCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATATT-GAAAAAAAAAATGGT-C-CAGGAATG--TTACATG-TATA-----GA---TCTAGTA---TGGTTT-T-A---TCTTTTGT---ATC-AAACTTATAAATATG--TATA-T---TTTTGG---AT-C-TTCCGCG----TAATGTGTA--CCAG-GT---AT--ATATATTTT-CACATCA-------------CACGTGC----TT--TTTA--AAAAA-TAAAACTGA--ATAATCAGTAGTCTTTTC-AGGAATAA-TCAT--ACG-AGTATTA-TATA---ACATTTTG---CAT-GAAAGCAAAT-CGTCTAAAAAGAACGAAAGAAAGAAAAAAAAAACCTGCCCAAAGTGTCTGCCC-GAAGTCT-GGAAGAAAATG-AAAGGT-TTTTCAA--A--A--ATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTGGTG-TAATCATAGTA-------TAAC--TTGGGTTTGAAAAAAAAAGTAAGTTGAT-GGTTAAC--AATATTCTGCATATAACATCCATA-TTTAG-TT-GAAA-ATAA--CTAT-TTGAATAAT-GATAAGA-TTTGTACTTATTTTTAATGTCATT-TTTT----TCCAGCGG-CCGG-CGG-TATTT--ATG---ACC-GAATGTATCTCTTCAAAAATAGCT-GGCAT-GAAGAA-AGACGT-T-TCT--TTGTTT--GTTAGGT-TTTT--GTTTGTTT------GTTTG--------------ATTTT---AT--TGGGG--GGGGG------------TTCGTT-CTTCTCTATCTCC-CTTTC-TTTCTTCAA-ATATCCCGCCTTGTTCTTGGCTTT-TACTCCTTCTCGATAAGCTTTCTGT--A----TTTCAGCTCGTA--ATCTGGCCA-TCTAAGGGTA---ACAGAGTAATCCAAAATAA--AATTAAA--AATTTT-GCTTGAAATGGTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A--TG--CTCCC-TAAGACAATTTtta
gi|5 : cAGTCTCAGA-GAAAATG-AAAGTT-TTTTTTATTATTATTATT-ATTTT-TG-T-GAG-------CACTTGTGACA--TGTA---TTTAGTG-TAATCATAGTACATTGTATAAC--TTGGGTTTGAACGACAT-GTAAGTTGAT-GGTTAAC--A-T-TTCTGCATATAATTTCCGTA-TTTAG-TT-GAAA-ATAA--CTAT-TTGAATAAC-AATAAGA-TTTGTACTTATTTTTAATGTCTTT-TTTTTTTCTCCAG-----CGG-CGG-TATCT--ATG---ACT-GAATGAATATCTTCAAAAATAGTC-GGCAT-GAAGAA-AGAC---T-TCT--TTTTTTTAATTTGGT-CTT
gi|5 : ------------TTTGGT-CTTCTCTATGTCC-CTTTC-TTTTTTCAA-ATATGCCGCCTTGTTCTTGGCTTT-GACTCTTTCTCGATAAGCTTTCTGT--C----TTTCAGCTCGTA--ATCTGGCCA-TCTAATGATATGTTCAGAGTAATC-------------------AATTTCGGCTTGAAATGTTCG--TTAC-CAA-GAA-ATGA-AAGA-T-TC-GTTACC-A--TG--CTCCC-TAAGACAATTctctatgtccctttcttttttcaaatatgccgccttgttcttggctttgactctttctcgataagctttctgtctttcagctcgtaatctggccatctaatgatatgttcagagtaatcaatttcggcttgaaatgttcgttaccaagaaatgaaagattcgttaccatgctccctaagacaattg
gi|8 : agtctcagagaaaatgaaagttttttttattattattattatttttgtgagcacttgtgacatgtatttagtgtaatcatagtacattgtataacttgggtttgaacgacatgtaagttgatggttaacatttctgcatataatttccgtatttagttgaaaataactatttgaataacaataagatttgtacttatttttaatgtcttttttttttctccagcggcggtatctatgactgaatgaatatcttcaaaaatagtcggcatgaagaaagacttcttttttttaaTAGTATGTAT-T-TAA-AA-CAA-TTTACACATGTAGATT-TAA-T-------ATG-TGCT-GC--A-AT--CTCCGAAATACACCGTCCAAA-GCAGCTAAAACTTCTTTTAAAATC--CAAAACAATTATTTATAAGTAA--TTT-AATC-TGGCATCA-T-CTG-CAT--AACCCTAT-Cg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): GTGGAACCAAGAAACTGCCCTTTCCACTTTTTTCTGACAACTTTACACTTTCCAGTATATATCATTTCCCCCTACAAACTATAGTATTTTCATCCGCAATTCACAAGCGCTTGGGTCTATAACTACAAAGGAGAATTTGAAGTATGGATTCTTGTTTTTGATGGCTGATTTGGATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGAATGAGCCTTCTGGCTTTCGTACAAATCGAAGTAGTTTCAGATAAAACTTGGACGAGAGTTTCAGATAGCACATTAGTTTTTTTTAATTAGAGTAAATACGTGTCAAAAAATTGCAGTTTAATCTTAATTGATAATTATTTTTGTTTAAAAATAAAATGAAGGTGGCAGCATACGATGGCCGGTTACCCCAAGTGCCTTTGATTTAAAAAAAATTATTAAGCCCTACCTGCTACAGATAAAGAGTGAAATCATTCAGCATTTTTCTTCTTTCGACCAAATATCTGTTTCTTTTCTTCTTTCTTTTTTTTCTATTTAAAATCTAATCTTATTTGACTTTAAATCATTTAATTTTTTTTTTTTTTTTACCGCAAAACGATATGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTA
Unaligned ( gi|6 ): ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAATCGAAGTGTTCAGATAAATCTTTGACTGAGAGTTCGATAGTTCTTCATTAGTTTTTTTAAATTAGAGTTAATACGTGTCAAAAAATTGCCGTTATCTAATTGATAATTATTTGTTTAAACAATAAATGAAGGTGGCAGCATACGAGTCCGTCTTACCCCAAGTGCCTTCATTTACAAAAATTTTTTTCAAACTGGGAATCATTCAGCTTTTCGACCAATATCTGTTTCTTTTCTTCTTTTTTTTTTTATGACTTTAAGTTTTAATTTTTTTTTTTTTTTTACCGCAACACGATATGGAAGCACTGCTTCCGTTGTTCATAGGAGCTAGCGCC
Unaligned ( gi|7 ): TATAGTTTCAGATAAAACCTGGACAGAGTTCAGAAGCACAATAGTTGTTATAACTAGAGTAAATACGTGTCAAAAAAATTGCAGTTAATCTGAATTATTTTTTGTTTAAAATATAATGAAGGGGGCGGCATACGATGACCGGTCTTACCCCAAGTGCCTTTGATTAAACAAAAAAAGATTTATATACATGTAGGCCTACCTGCTACAGATAAAGATGAAATCATTTAGCATTTTCAACCAAATTCTTTTTTTTCTACTTAAAATCTAATTTTATTTGACATTAAATCATTTATTTTATTTTTTTTTTTTTACCGCAAAACGATGTGGAAGCACATGCTTCCGTGCTTCATAGGAAGCTACGCCAC
Unaligned ( gi|9 ): GAAGGGACGGGATACGATGTCCGTACTTACCGCCATGTACCTTTGCAAATTTAAATAGAATTTGATAAACATGATGAAATCATCAGCATTTATAATATAGTTATTTAAAATCTAAATTCTAGTTGACTTTAAAATTATTTTCTTCTTTTAAGCGCAACAATGTCATGACATGTGGAAGGTCACATGCTATCCGTGCTTTATATGATAGGCTACGCCA
Unaligned ( gi|17 ): CCTTTGATTTAAATAAAAAATTTACATATATTTACACACATGCTACAGATTAAGATGAAATCAT
Unaligned ( gi|19 ): TTTCTATTATGGTGCAGTATGTTTGTAAATGCATTATAATTCTTG
Unaligned ( gi|20 ): ATAATTATTGAATGTCTAGCGTTGAACATTTAATAGCACT
Unaligned ( gi|21 ): GAGAACACGCACGACTCGAAAGGTAAACTTGCAAATCT
Unaligned ( gi|22 ): TGTATGTACTAGTATGTATCTCTTCTGTCAGACAG