lowQualScore : 4 11 1111 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 222 1111111111111111 1111 333 222 111111 666666666666666666666666666666666666666666 33333
lowQualScore : 6 0 44 1 4444 6 99 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 3 888 3 55 333 0 44 3 555 44 4 2 6666666666666666 99 2 66 33 5 1111 77 666 33 77777 444 33 2 2 33 2 2 33 66 3 777 222222 777777777777777777777777777777777777777777 00000
lowQualScore : . . .. . .... . .. . ............................................................................................................... . ... . .. ... . .. . ... .. . . ................ .. . .. .. . .... .. ... .. ..... ... .. . . .. . . .. .. . ... ...... .......................................... .....
lowQualScore : 0 0 00 4 2222 7 22 0 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 6 111 6 00 777 3 66 3 888 22 7 4 5555555555555555 00 7 33 77 3 8888 33 333 77 77777 333 55 7 9 99 7 9 99 88 3 000 111111 000000000000000000000000000000000000000000 00000
consensus : AATTTAGATCATA-TACATCACAGTT----ACAGCA-AA--CACGCTTATAATGAATTCC-ACACTT-ACAAGGTGAANCA-CGG-TT--ACAG-C-AA-ACA---C-GCT---TATA-ATGA-AT-TCAC-A---C-T--ACAG-T-----AA--C----GC--TTA-CA-GCG-A-A--CACGCTTATAA--CGAATT--C-A---CG--CTTACA-G-TA---------------AAA--C-A--CAGTT--ACA-G--CGAA--CAC-GC--TTA---T-ANN-GAA-TT-CAC-GC--TT-ACA-G--T-GAA-A---CGCNG--TTACAG-CG-A-ACAC-GCTT-ATAA-GAANTCGA--CGNTTAT-AGCGAAGTGATCNCCATTC
Reference ( gi|1 ) : AATTCAGA-CATAGTACATCACAGCT----ACAGCA-AA--CACACTAATAATGAATTTTAACACTTGACAAGGTAAACCA-CAG-TT--ACGG-TGAA-ACA---C-ACG---T-TA-ATGA-ATGTCAC-A---C-T--ACATCT-----AA--C----GC--TT--CA-GCA-A-A--CACACTTATAA--AAAATT--C-A---CA--CTTACA-G-TA---------------AAA--C-A--CAGTT--ACA-G--TGAA--CA--AC--TTA---T-ATA-GAA-TT-CAC-AC--TT-ACA-G--T-AAA-A---CGCTG--TTA-AG-CA-A-A-AC-ACTTAATAA-GAATTCGA--CGCATAC-AGCGAAGTGACTTTTATTC
gi|2 : AATTTAGATCAT----CATCTCAACTTTTTA-AGCA-AA--CACACTTCTAATGAAATTC-ACCCTT-ACA--GTGAAACATCAG-TT--ACAG-C-CA-ACA---C-GC----T-TATATGATAT-TCAC-A---CTT--ACA-GTGAA--AA--C----GC--TCTACA-GCC-ATA--CACACTTATAA--TAGA-T--C-AAATCA--CTTACA-G-TG---------------AAA----A--CGGTT--ACACG--CCAA--CAC-GC--TTA---A-AT--GAA-GT-CAC-ATCGTT-ACA-AGTT-AAA-AAACCACAG--TTACAGCCA-ACA-ACGGCTT-ATAATGAAATC
gi|7 : ACAGTAAAATACAGCT----ACAGCA-AA--CATGCTTACGATGAATTac
gi|3 : aTACTACATTA--ATT----ACAGTA-AAGACACACTTATAA-GAATCACAA-ACCT-ACAAG-TAAAACA-CAG-TT--ATAG----A-ATA---T-GCG---TATA-ATGA-AT-TCAC-A---CTT--ACAGGTAAAACAA--C----AT--TA--TA-GTG-A-A--CATGCTTATAA--CAAAGT--C-A---TG--CTTcaagattatagcaaagtgatcatcattcactgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|8 : tCACACTT----ACAGTAGAA--CACGCTTATAATTAATTC--ACACTT---AAAGTATAGCA-CGC-TT--A-------------------------TA-ATGA-AT-TCAC-A----------------------------GT--TA--TA-GTG-A-G--CACATCTATAA--TGAATT--C-A---CA--GTTATA-G-T----------------GAA--C-A--CAttgagcaaagtgattccattcgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|9 : atgaatcCAGTT----ACAGCT-AA--CACGCTTATAATGAATTTC-ACACTTAAC-AGCTGAACAT-CGGTTT--ACAG-C-AG-ACA---C-GC----T-TA-tctataa
gi|4 : acagtgaaactT----ACAGTC-AA--CACATCTATAGTGAATTC--ATGCTT-ACA--GTCAAC-A-CAT-CT--ATAA-TGAA-ACATGTC-ACGCACT-TA-ATGG-ATATAAC-A--------ACA--------AA--C----Gtaacaaggctaacacgcttataatga
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgctAGCTAAAACA-CGG-TTTAACAAACCAA-ACA---CCACT---T-TATATGA-AT-TCATTG---C-TT-ACAGTA-----AA--C----ACGGTTA-CA-CCA-A-A--CACACTTACAATCGACGTT--CTA---TG--CT-ACT-G-TA---------------AAAA-C-AAACGGTT--ACA-C--CAAA--CA--AC--TTA---C-AAT-GAG-TT-Caattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|9 : tacatgtatgcaacaatatacGTGAAACT-CAG-TT--ACAG-CTAA--CA---C-GCT---TATA-ATGA-ATTTCAC-A---C-TTAACAGCTG----AA--CATCGGT--TTA-CA-GCA-G-A--CACGCTTATAAC-AAGGCTAAC-A---CG--CTTATA-A-TG---------------A
gi|8 : acaAATCCA-CAC-TT--ACAG-TAGA-ACA---C-GCT---TATA-ATTA-AT-TCAC-A---C-T--
gi|3 : atgAA-TT--ACAG-TAAAGACA---C-ACT---TATA-A-GA-AT--CAC-AAACC-T--ACAAGT-----AAAAC----ACAGTTA-TA-G---A-A--TATGCGTATAA--TGAATT--C-A---CA--CTTACAGG-TA---------------AAA--CAA--CA-TT--ATA-G--TGAA--CAT-GC--TTA---T-AAC-AAA-GT-CAT-GC--TT-taaagtatagcacgcttataatgaattcacagttatagtgagcacatctataatgaattcacagttatagtgaacacatctataa
gi|3 : ttactacatt-A---C-T--ACAT-T-----AA-----------TTA-CA-GTA-A-AGACACACTTATAA--GAA--T--C-A---CAAACCTACAAG-TA---------------AAA--C-A--CAGTT--ATA-G----AA--TAT-GC--GTA---T-AAT-GAA-TT-CAC-AC--TT-ACAGG--T-AAA-A---CAACA--TTATAG-TG-A-ACAT-GCTT-ATAACAAAGTC-A--TGCTTTTGAGCAAAGTGA-TTCCATTCttgagcaaagtgattccattcgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|2 : ttCATCTC----AA--C----TT--TT--TAAGCA-A-A--CACACTTCTAAT-GAAATT--C-A---CC--CTTACA-G-TG---------------AAA--C-AT-CAGTT--ACA-G--CCAA--CAC-GC--TTA---T-ATG-ATA-TT-CAC-AC--TT-ACA-G--TGAAA-A---CGCTC--TAC-AGCCATA-C-AC-ACTT-ATAA-TAGATCAAATCACTTAC-AGTGAAgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|8 : aatttagatcatA--C----AC--TTA-CA-GTAGA-A--CACGCTTATAA--TTAATT--C-A---CA--CTTAAA-G-TATAGCACGCTTATAATGAATTC-A--CAGTT--ATA-G--TGAG--CAC-AT--CTA---T-AAT-GAA-TT-CAC-AG--TT-ATA-G--T-GAA-aacggttacacgccaacacgcttaaatgaagtcacatcgttacaagttaaaaaaccacagttacagccaacaacggcttataatgaaatcac
gi|4 : atgaatccC--TA--CA-GTC-A-A--CGCATCTATAA--TGAATT--C-A---TG--CTTACA-G-T----------------CAA--C-A--CATCT--ATA-G--TGAATTCAT-GC--TTA---C-AGT-CAA----CAC-AT--CT-ATA-A--T-GAA-A---CA-TG--TCA-CG---------C-ACTTAATcacatctataa
gi|16 : gtaaaactcaa--CA-GCT-A-A--CATGCTTATAA--TGAATT--C-A---CA--CTTACA-G-ggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|8 : aAATC--C-A---CA--CTTACA-G-TA---------------GAA--C-A--CGCTT--ATA-A--TTAATTCAC-AC--TTAAAGT-ATA-G------CAC-GC--TT-ATA-A--T-GAATT---CACAG--TTATAG-TG-A-GCAC-ATCT-ATAATGAATTC-A--CAGTTAT-AGTGAA
gi|13 : atgA--CATACA-G-TA---------------AAA--T-A--CAACT--ACA-G--CAAA--T---ACTGTTA---C-AAG-GAA-TT-CAA-AT--TT-ACA-G--T-GAcacatctataa
gi|5 : gtTACA-GCTA---------------AAA--C-A--CGGTTTAACA-AACCAAA--CACCAC--TT----T-ATATGAA-TT-CATTGC--TT-ACA-G--T--AA-A---CACGG--TTACAC-CA-A-ACAC-ACTT-ACAA-----TCGA--CGggtaatc
gi|9 : tacatgtatgcaacaataACA-G-TG---------------AAA--C-T--CAGTT--ACA-G--CTAA--CAC-GC--TTA---T-AAT-GAATTT-CAC-AC--TTAACA-G--C-TGA-A---CATCGGTTTACAG-CA-G-ACAC-GCTT-ATAA-CAAttctatgctactgtaaaaacaaacggttacaccaaacaacttacaatgagttc
gi|7 : ACA-G-TA---------------AAA--T-A--CAGCT--ACA-G--CAAA--CAT-GC--TTA---CGAT--GAA-TT-CAA-GA--TT-ATA-G--C-AAA-ggctaacacgcttataatga
gi|12 : aACA-G-TA---------------GAA--C-A--CAGCT--ACA-G--GGGA--CCT-GT--TTA---CAATG-AAA-AC-CAT-GC--TT-ACA-G--T-GAA-G---CGgtgatcatcattcactgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|10 : CA-G-TA---------------AAAG-C-A--CAGTT--ACATG--TGAA--CA---C--GTA---T-AAACGAA-TTTCAT-GC--TT-ACA-G--T-GAA-G---CGattctcattcccactg
gi|16 : --ACA-G--CTAA--CAT-GC--TTA---T-AAT-GAA-TT-CAC-AC--TT-ACA-G--agtttcattctttgctgttctgtagtatattgaactcaatggacataac
gi|7 : -ACA-G--T-AAA-A---TACAG--CTACAG-CA-A-ACAT-GCTTACGAT-GAATTCAA---GATTAT-AGCAAAGTGATCATCATTC
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): CAATCAGTCAAATTACATAGTGCGACATGCAAACTTGCATATAATGAACTCATGCTTACTGCTGTAAAGTGATTTTCACTCTCTGTACTATTAAAATACATAAAGAACTTATTGGATATCTTATAATGAACTACATTTATAATAAGTAAAAAATTGT
Unaligned ( gi|11 ): TAATAAAATCATATAACAAACATTTCGTGTATAACAAGCTACGTTTATATCCAAAATATTCGTCCCTAGAGCTATAAGCGTGTTTTACTGTA
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 1 22 3333333 11111 11 11111 11 1111 6666666666666666666666666 222 1 666666666666666666666666 1 1111111 1111 2 2222 1 111
lowQualScore : 5 00 0000000 88888 11 11111 00 8 0 8888 1 8 2222222222222222222222222 33 99 0 6 555 3 6 111111111111111111111111 1 5 66 99 9 3333333 3 2 3 8 33 0 3 2 777 5 5 5 1 77 5 5 5 2 2222 66 99 1 4 8 8 8 4 1 6666 6 1 0 333
lowQualScore : . .. ....... ..... .. ..... .. . . .... . . ......................... .. .. . . ... . . ........................ . . .. .. . ....... . . . . .. . . . ... . . . . .. . . . . .... .. .. . . . . . . . .... . . . ...
lowQualScore : 5 77 6666666 44444 00 22222 88 0 8 8888 8 0 1111111111111111111111111 22 77 7 7 000 3 7 333333333333333333333333 6 0 99 66 4 9999999 3 6 6 9 88 2 0 3 777 7 7 7 4 99 0 0 0 2 1111 22 22 0 6 0 0 0 0 0 8888 5 0 0 777
consensus : AATTCAGATCATA-TACA--T----CACAG----TT--ACAG--CA-AACAC-ACTT-ATAATGAATTCCA-CGCTT-ACAA-------------GGTGAA-ACA-CGGTTACAGC-NAACACGCTTATAAT-GA---AT-TC-ACGC-TACAT-T-------AACGCT-TACAGCNA-A--CACACTTATAATGAATTCA---CG--CTTACA-GTAAAA-CACAGTTACA-GCGAACACGCTTATAAT-G-AA-TT-CACGC--TT-AC-AG-TGAAA----CGCNG--TTACAGCGAAC-AC-GCTT-ATAACGAANTC---GACGCTTAT-AGCGAAGTGATCTTCATTC
Reference ( family-1912 ) : AATTTAGATCATA-TACA--T----CACAG----TT--ACAG--CA-AACAC-GCTT-ATAATGAATTCCA-CACTT-ACAA-------------GGTGAA-NCA-CGGTTACAGC-AAACACGCTTATAAT-GA---AT-TC-ACAC-TACAG-T-------AACGCT-TACAGCGA-A--CACGCTTATAACGAATTCA---CG--CTTACA-GTAAAA-CACAGTTACA-GCGAACACGCTTATANN-G-AA-TT-CACGC--TT-AC-AG-TGAAA----CGCNG--TTACAGCGAAC-AC-GCTT-ATAA-GAANTC---GACGNTTAT-AGCGAAGTGATCNCCATTC
gi|1 : AATTCAGA-CATAGTACA--T----CACAG----CT--ACAG--CA-AACAC-ACTA-ATAATGAATTTTAACACTTGACAA-------------GGTAAA-CCA-CAGTTACGGTGAAACACACGT-TAAT-GA---ATGTC-ACAC-TACATCT-------AACGCT-T-CAGCAA-A--CACACTTATAAAAAATTCA---CA--CTTACA-GTAAAA-CACAGTTACA-GTGAACA-ACTTATATA-G-AA-TT-CACAC--TT-AC-AG-TAAAA----CGCTG--TTA-AGCAAA--AC-ACTTAATAA-GAATTC---GACGCATAC-AGCGAAGTGACTTTTATTC
gi|10 : CA-GTAAAAGCACAGTTACATGTGAACACG--TATAAACG-AA-TTTCATGC--TT-AC-AG-TGAAG----CG-AG--TTTCA
gi|12 : ACA-GTAGAA-CACAGCTACA-GGGGACCTGTTTACAAT-GAAA-AC-CATGC--TT-AC-AG-TGAAG----CGttctttgctgttctgtagtatattgaactcaatggacataac
gi|13 : TACA-GTAAAA-TACAACTACA-GCAAATACTGTTACAAG-G-AA-TT-CAAAT--TT-AC-AG-TGAattctcattcccactg
gi|16 : gtacaACAGCTA-A--CATGCTTATAATGAATTCA---CA--CTTACA-Gggtaatc
gi|2 : AATTTAGATCAT----CA--T----CTCAACTTTTT--A-AG--CA-AACAC-ACTT-CTAATGAAATTCA-CCCTT-ACA---------------GTGAA-ACATCAGTTACAGC-CAACACGCTTAT-AT-GAT--AT-TC-ACACTTACAG-TGAA----AACGCTCTACAGCCATA--CACACTTATAATAGA-TCAAATCA--CTTACA-GTGAAA--ACGGTTACACGCCAACACGCTTA-AAT-G-AA-GT-CACATCGTT-ACAAG-TTAAAAAACCACAG--TTACAGCCAACAACGGCTT-ATAATGAAATC---
gi|3 : AC-TACAT-T-------AA---T-TACAGTAA-AGACACACTTATAA-GAAT-CA---CAAACCTACAAGTAAAA-CACAGTTATA-G--AATATGCGTATAAT-G-AA-TT-CACAC--TT-AC-AGGTAAAA----CAACA--TTATAGTGAAC-AT-GCTT-ATAACAAAGTC----ATGCTTTTGAGCAAAGTGAT-TCCATTCac
gi|4 : ttGTAAA-ACT-CAACTACAGT-CAACGCATCTATAAT-GA---AT-TC-AT--------------------GCT-TACAGTCA-A--CACATCTATAGTGAATTCA---TG--CTTACA-GT-CAA-CACATCTATA-ATGAAgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : CAA----CT--ACAG--TC-AACGC-ATCT-ATAATGAATT-CA-TGCTT-ACAGTCAACACATCTATAGTGAATTCA-TGCTTACAGT-CAACACATCTATAAT-GAAACATGTC-ACGC--AC-T-T-------AATGGA-TATAAC-A-A--CA-------AACGAATT-G---TG--TTTACA-TTAAAT-CAacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|4 : gtaaaactTACA-GTAAAA-CACGCTTATA-GCGGGCGCtcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaATA-TACAGCTAAAACACGG----TTTAACAAACCA-AACACCACTTTATA-TGAATTCAT-TGCTT-ACA---------------GT-AA-ACA-CGGTTACACC-AAACACACTTACAATCGAC--GT-TCTATGC-TACTG-TAAAAACAAACGGT-TACACCAA-A--CA-ACTTACAATGAGTTC
gi|7 : tacatgtatgcaaca-AC-AG-TAAAA----TACAG--CTACAGCAAAC-AT-GCTT-ACGATGAATTC---AA-GATTAT-AGCAAAGTGATCATCATTC
gi|8 : a----CACAC----TT--ACAG--TAGAACAC-GCTT-ATAATTAATTC-A-CACTT-A-AA-------------G--------------TATAGC-A----CGCTTATAAT-GA---AT-TC-ACA-------------------G-T-TATAGTGA-G--CACATCTATAATGAATTCA---CA--GTTATA-GT-GAA-CACAactgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|9 : atgaatcACA-GTGAAA-CTCAGTTACA-GCTAACACGCTTATAAT-G-AATTT-CACAC--TTAAC-AG-CTGAA----CATCGGTTTACAGCAGAC-AC-GCTT-ATAA-CAAGGCTAACACGCTTAT-AATGAtctataa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAATCAGTCAAATTACATAGTGCGACATGCAAACTTGCATATAATGAACTCATGCTTACTGCTGTAAAGTGATTTTCACTCTCTGTACTATTAAAATACATAAAGAACTTATTGGATATCTTATAATGAACTACATTTATAATAAGTAAAAAATTGT
Unaligned ( gi|11 ): TAATAAAATCATATAACAAACATTTCGTGTATAACAAGCTACGTTTATATCCAAAATATTCGTCCCTAGAGCTATAAGCGTGTTTTACTGTA
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 1 22 1111111 11111 11111 555555555555555555555555555 222 1 6666666666666666666666666 1111111 1 111111 1111 222 111 1
lowQualScore : 5 00 6666666 55555 99 1 11111 6 6 1 666666666666666666666666666 7 6 0 6 555 3 6 4444444444444444444444444 6 5 77 4 3 5 6666666 3 55 44 3 55 0 000000 0 1 4 4 4 4 0 66 4 4 4 2 2222 66 99 5 4 6 6 6 6 1 777 6 8 444 0
lowQualScore : . .. ....... ..... .. . ..... . . . ........................... . . . . ... . . ......................... . . .. . . . ....... . .. .. . .. . ...... . . . . . . . .. . . . . .... .. .. . . . . . . . ... . . ... .
lowQualScore : 5 77 2222222 22222 22 0 33333 7 7 7 777777777777777777777777777 5 7 7 7 000 3 7 6666666666666666666666666 6 7 99 3 9 0 8888888 3 00 66 3 00 9 555555 4 0 0 0 0 4 7 11 0 0 4 2 1111 22 22 7 8 7 7 7 3 0 444 4 0 000 5
consensus : AATTCAGATCATA-TACA--T----CACGG----TT--ACAG--CA-AACAC-ACTT-ATAATGAATTCCA-CGCTT-ACAAGGTAAAACA-CAGTTACAGCCAA-CACGCTTATAAT-GA---AT-TC-ACGC-TAC-------AT-T---AACG-T-TACAGCGA-A--CACACTTATAATGAATTCA---C--GCTTAC-AGT-AAA--A-CACAGTT--ACA-GCGAA------CACGCTTATAA-TG-AA-TT-CACGC--TT-AC-A-GTGAAA----CGCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCTTAT-AGC---GAAGTGATTTTCATTC
Reference ( family-1912 ) : AATTCAGATCATA-TACA--T----CACAG----TT--ACAG--CA-AACAC-ACTT-ATAATGAATTCCA-CGCTT-ACAAGGTGAAACA-CGGTTACAGCNAA-CACGCTTATAAT-GA---AT-TC-ACGC-TAC-------AT-T---AACGCT-TACAGCNA-A--CACACTTATAATGAATTCA---C--GCTTAC-AGT-AAA--A-CACAGTT--ACA-GCGAA------CACGCTTATAA-TG-AA-TT-CACGC--TT-AC-A-GTGAAA----CGCNG--TTACA-GCGAAC-AC-GCTT-ATAACGAANTCG--ACGCTTAT-AGC---GAAGTGATCTTCATTC
gi|1 : AATTCAGA-CATAGTACA--T----CACAG----CT--ACAG--CA-AACAC-ACTA-ATAATGAATTTTAACACTTGACAAGGTAAACCA-CAGTTACGGTGAAACACACGT-TAAT-GA---ATGTC-ACAC-TAC-------ATCT---AACGCT-T-CAGCAA-A--CACACTTATAAAAAATTCA---C--ACTTAC-AGT-AAA--A-CACAGTT--ACA-GTGAA------CA-ACTTATAT-AG-AA-TT-CACAC--TT-AC-A-GTAAAA----CGCTG--TTA-A-GCAAA--AC-ACTTAATAA-GAATTCG--ACGCATAC-AGC---GAAGTGACTTTTATTC
gi|10 : C-AGT-AAA--AGCACAGTT--ACATGTGAA------CACG--TATAAACG-AA-TTTCATGC--TT-AC-A-GTGAAG----CG-AG--TTTCA-
gi|12 : AC-AGT-AGA--A-CACAGCT--ACA-GGGGA------CCTGTTTACAA-TGAAA-AC-CATGC--TT-AC-A-GTGAAG----CGttctttgctgttctgtagtatattgaactcaatggacataac
gi|13 : TAC-AGT-AAA--A-TACAACT--ACA-GCAAA------TACTGTTACAA-GG-AA-TT-CAAAT--TT-AC-A-GTGAattctcattcccactg
gi|16 : gtaca--ACA-GCTAA------CATGCTTATAA-TG-AA-TT-CACAC--TT-AC-A-Gggtaatc
gi|2 : AATTTAGATCAT----CA--T----CTCAACTTTTT--A-AG--CA-AACAC-ACTT-CTAATGAAATTCA-CCCTT-ACA--GTGAAACATCAGTTACAGCCAA-CACGCTTAT-AT-GAT--AT-TC-ACACTTAC-------AG-TGAAAACGCTCTACAGCCATA--CACACTTATAATAGA-TCAAATC--ACTTAC-AGT-GAA--A--ACGGTT--ACACGCCAA------CACGCTTA-AA-TG-AA-GT-CACATCGTT-ACAA-GTTAAAAAACCACAG--TTACA-GCCAACAACGGCTT-ATAATGAAATC
gi|3 : C-TAC-------AT-T---AA---T-TACAGTAA-AGACACACTTATAA-GAA-TCA---CAAACCTACAAGT-AAA--A-CACAGTT--ATA---GAA------TATGCGTATAA-TG-AA-TT-CACAC--TT-AC-AGGTAAAA----CAACA--TTATA-GTGAAC-AT-GCTT-ATAACAAAGTC---ATGCTTTTGAGC---AAAGTGAT-TCCATTCac
gi|4 : ttaGTAAAACT-CAACTACAGTCAA-CGCATCTATAAT-GA---AT-TC-ATGC-T-----------------------TACAGTCA-A--CACATCTATAGTGAATTCA---T--GCTTAC-AGT--CA--A-CACATCT--ATA-ATGAAACATGTCACGCACTTAA-TG-GA-Tgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : --T----CATGC----TT--ACAG--TC-AACAC-ATCT-ATAGTGAATT-CA-TGC--------------------TTACAGTCAA-CACATCTATAAT-GAAACATGTC-ACGC--AC--------T-T---AATGGA-TATAAC-A-A--CA-------AACGAATT-G---T--GTTTAC-ATT-AAA--T-CAataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|4 : gtaaaactcaactacagtcaacgcatctataatgaatTAC-AGT-AAA--A-CACGCTT--ATA-GCGGG------CGCtcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaATA-TACAGCTAAAACACGG----TTTAACAAACCA-AACACCACTTTATA-TGAATTCAT-TGCTT-ACA--GT-AAACA-CGGTTACACCAAA-CACACTTACAATCGAC--GT-TCTATGC-TACTGTAAAAAC-A---AACGGT-TACACCAA-A--CA-ACTTACAATGAGTTC
gi|6 : tacatgtatgcaacaC-AGTCAAATTA-CATAGTGCGACATGCAAA------CTTGCATATAA-TG-AA-CT-CATGC--TT-AC-
gi|6 : caatACATGCAAAC-TT-GCAT-ATAATGAACTC---ATGCTTAC-TGCTGTAAAGTGATTTTCACTCtgctgtaaagtgattttcactctctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : caatcagtcaaattacatagtgcg-AC-A-GTAAAA----TACAG--CTACA-GCAAAC-AT-GCTT-ACGATGAATTCA--A-GATTAT-AGC---AAAGTGATCATCATTCtctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|8 : a----CACAC----TT--ACAG--TAGAACAC-GCTT-ATAATTAATTC-A-CACTT-A-AAG-------------TATAGC-----ACGCTTATAAT-GA---AT-TC-ACA----------------------G-T-TATAGTGA-G--CACATCTATAATGAATTCA---C--AGTTAT-AGT--GA--A-CACAactgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|8 : atgaatc--T----CACAG----TT--ATAG--TG-AACAC-ATCT-ATAAtctataa
gi|9 : atgaatccacacttacagtagaacacgcttataattaattcacacttaaagtatagcacgcttataatgaattcacagttatagtgagcacatctataatgaatAC-AGT-GAA--A-CTCAGTT--ACA-GCTAA------CACGCTTATAA-TG-AATTT-CACAC--TTAAC-A-GCTGAA----CATCGGTTTACA-GCAGAC-AC-GCTT-ATAACAAGGCTAACACGCTTAT-AAT---GA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATAAAATCATATAACAAACATTTCGTGTATAACAAGCTACGTTTATATCCAAAATATTCGTCCCTAGAGCTATAAGCGTGTTTTACTGTA
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 1 4444 222222 1 444444444444444444444444444 2222 111 1 66666666666666666666666666 1 1111111 1 1111 222 111
lowQualScore : 5 1111 999999 2 0 222222222222222222222222222 99 777 0000 6 888 3 77777777777777777777777777 1 5 77 99 5 5 3333333 0 3 77 44 3 44 44 0 22 999999 3 0 3 3 3 4 0 66 4 4 4 2 2222 66 99 5 6 6 6 6 1 777 6 8 444 7
lowQualScore : . .... ...... . . ........................... .. ... .... . ... . .......................... . . .. .. . . ....... . . .. .. . .. .. . .. ...... . . . . . . . .. . . . . .... .. .. . . . . . . ... . . ... .
lowQualScore : 5 5555 888888 5 0 666666666666666666666666666 22 222 8888 3 333 3 22222222222222222222222222 1 7 99 66 7 7 9999999 1 1 00 22 1 22 66 0 66 666666 7 1 6 6 6 0 7 11 0 0 4 2 1111 22 22 7 7 7 7 3 0 444 4 0 000 0
consensus : AATTCAGATCATAGTACATCACGN----TTACAGCA-AACACACTTATAATGAATTTCA-CGCTT-ACAAGGTAAAACA-CAGTT--ACAG-CCAA----CACGCTTATAATGA---AT-TCAC-GC-T-ACAT-T---AA---CG--T-TACAGCGA-A--CACACTTATAAT-GA-ATTC-A---CG--CTTACA-GT-AAA--A-C--ACAGTT--ACA-GCGAA------CACGCTTATAA-TG-AA-TT-CACGC--TT-AC-A-GTGAAA----CGCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCTTAT-AGC---GAAGTGATTTTCATTC
Reference ( family-1912 ) : AATTCAGATCATA-TACATCACGG----TTACAGCA-AACACACTTATAATGAATTCCA-CGCTT-ACAAGGTAAAACA-CAGTT--ACAG-CCAA----CACGCTTATAATGA---AT-TCAC-GC-T-ACAT-T---AA---CG--T-TACAGCGA-A--CACACTTATAAT-GA-ATTC-A---CG--CTTACA-GT-AAA--A-C--ACAGTT--ACA-GCGAA------CACGCTTATAA-TG-AA-TT-CACGC--TT-AC-A-GTGAAA----CGCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCTTAT-AGC---GAAGTGATTTTCATTC
gi|1 : AATTCAGA-CATAGTACATCACAG----CTACAGCA-AACACACTAATAATGAATTTTAACACTTGACAAGGTAAACCA-CAGTT--ACGG-TGAAA---CACACGT-TAATGA---ATGTCAC-AC-T-ACATCT---AA---CG--C-TTCAGCAA-A--CACACTTATAAA-AA-ATTC-A---CA--CTTACA-GT-AAA--A-C--ACAGTT--ACA-GTGAA------CA-ACTTATAT-AG-AA-TT-CACAC--TT-AC-A-GTAAAA----CGCTG--TTA-A-GCAAA--AC-ACTTAATAA-GAATTCG--ACGCATAC-AGC---GAAGTGACTTTTATTC
gi|10 : CA-GT-AAA--AGC--ACAGTT--ACATGTGAA------CACG--TATAAACG-AA-TTTCATGC--TT-AC-A-GTGAAG----CG-AG--TTTCA-
gi|12 : ACA-GT-AGA--A-C--ACAGCT--ACA-GGGGA------CCTGTTTACAA-TGAAA-AC-CATGC--TT-AC-A-GTGAAG----CGttctttgctgttctgtagtatattgaactcaatggacataac
gi|13 : TACA-GT-AAA--A-T--ACAACT--ACA-GCAAA------TACTGTTACAA-GG-AA-TT-CAAAT--TT-AC-A-GTGAattctcattcccactg
gi|16 : gtaca--ACA-GCTAA------CATGCTTATAA-TG-AA-TT-CACAC--TT-AC-A-Gggtaatc
gi|2 : AATTTAGATCAT----CATCTCAACTTTTTA-AGCA-AACACACTTCTAATGAAATTCA-CCCTT-ACA--GTGAAACATCAGTT--ACAG-CCAA----CACGCTTAT-ATGAT--AT-TCAC-ACTT-ACAG-TGAAAA---CGCTC-TACAGCCATA--CACACTTATAAT-AG-A-TC-AAATCA--CTTACA-GT-GAA--A----ACGGTT--ACACGCCAA------CACGCTTA-AA-TG-AA-GT-CACATCGTT-ACAA-GTTAAAAAACCACAG--TTACA-GCCAACAACGGCTT-ATAATGAAATC
gi|3 : C-T-ACAT-T---AA-------T-TACAGTAA-AGACACACTTATAA--GA-AT-C-A---CAAACCTACAAGT-AAA--A-C--ACAGTT--ATA-G--AA------TATGCGTATAA-TG-AA-TT-CACAC--TT-AC-AGGTAAAA----CAACA--TTATA-GTGAAC-AT-GCTT-ATAACAAAGTC---ATGCTTTTGAGC---AAAGTGA-TTCCATTCac
gi|4 : ttaGTAAAACT-CAACT--ACAG-TCAA----CGCATCTATAATGA---AT-TCAT-GC-T---------------------TACAGTCA-A--CACATCTATAGT-GA-ATTC-A---TG--CTTACA-GT--CA--A-C--ACATCT--ATA-ATGAAACATGTCACGCACTTAA-TG-GA-Tgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : TCATGC----TTACAGTC-AACACATCTATAGTGAATT-CA-TGC--------------------TT--ACAG-TCAA----CACATCTATAATGAAACATGTCAC-GC---AC-T-T---AA---TG--GATATAAC-A-A--CA-------AAC-GA-ATT--G---TG--TTTACA-TT-AAA--T-C--Aataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|4 : gtaaaactcaactacagtcaacgcatctataatgaatTACA-GT-AAA--A-C--ACGCTT--ATA-GCGGG------CGCtcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaT-ACA-GCTAAAACA-CGGTTTAACAAACCAAACACCAC-TTTATA-TGA---AT-TCATTGC-TTACAG-T---AAACACGG-T-TACACCAA-A--CACACTTACAATCGACGTTCTA---TG--C-TACT-GTAAAA--A-CAAACGGTT--ACA-CCAAA------CA-ACTTACAA-TG-AG-TT-C
gi|6 : tacatgtatgcaacaataCA-GTCAAATTA-C--ATAGTGCGACATGCAAA------CTTGCATATAA-TG-AA-CT-CATGC--TT-AC-
gi|6 : caatACATGCAAAC-TT-GCAT-ATAATGAACTC---ATGCTTAC-TGCTGTAAAGTGATTTTCACTCtgctgtaaagtgattttcactctctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : caatcagtcaaattacatagtgcg-AC-A-GTAAAA----TACAG--CTACA-GCAAAC-AT-GCTT-ACGATGAATTCA--A-GATTAT-AGC---AAAGTGATCATCATTCtctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|8 : aCACAC----TTACAGTAGAACACGCTTATAATTAATTC-A-CACTT-A-AAG-------------T--ATAG-C--------ACGCTTATAATGA---AT-TCAC-A-------------------G--T-TATAGTGA-G--CACATCTATAAT-GA-ATTC-A---CA--GTTATA-GT--GA--A-C--ACAactgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|9 : atgaatcACA-GT-GAA--A-C--TCAGTT--ACA-GCTAA------CACGCTTATAA-TG-AATTT-CACAC--TTAAC-A-GCTGAA----CATCGGTTTACA-GCAGAC-AC-GCTT-ATAACAAGGCTAACACGCTTAT-AAT---GAtctataa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATAAAATCATATAACAAACATTTCGTGTATAACAAGCTACGTTTATATCCAAAATATTCGTCCCTAGAGCTATAAGCGTGTTTTACTGTA
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 1 2222 222 11 1 1 1 111 11 222222222 666666666666666666666666 11 1111111 1 1111 222 111
lowQualScore : 5 4444 333 00 3 7 3 9 0 2 666 0 99 11 666666666 6 0 11 8 8 999999999999999999999999 6 9999 00 6 6 6666666 1 3 88 44 3 44 44 0 22 999999 3 0 3 3 3 4 0 66 4 4 4 2 2222 66 99 5 6 6 6 6 1 777 6 8 444 7
lowQualScore : . .... ... .. . . . . . . ... . .. .. ......... . . .. . . ........................ . .... .. . . ....... . . .. .. . .. .. . .. ...... . . . . . . . .. . . . . .... .. .. . . . . . . ... . . ... .
lowQualScore : 5 0000 333 00 3 3 3 0 0 5 888 6 00 00 000000000 4 8 66 0 0 666666666666666666666666 3 3333 22 7 7 8888888 7 3 33 66 3 66 66 0 66 666666 7 1 6 6 6 0 7 11 0 0 4 2 1111 22 22 7 7 7 7 3 0 444 4 0 000 0
consensus : AATTCAGATCATAGTACATC---ACANTTACAGCA-AACACGCTTATAATGAATTTCA-CACTT-ACAAGGTAAAACA-CAGTT--ACAG-CCAAA---CACGCTTATAATGA-AT-TCAC-GC-T-ACA--T---AA---CG--TTACAGCGA-A--CACACTTATAAT-GA-ATTC-A---CG--CTTACA-GT-AAA--A-C--ACAGTT--ACA-GCGAA------CACGCTTATAA-TG-AA-TT-CACGC--TT-AC-A-GTGAAA----CGCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCTTAT-AGC---GAAGTGATTTTCATTC
Reference ( family-1912 ) : AATTCAGATCATAGTACATC---ACGNTTACAGCA-AACACACTTATAATGAATTTCA-CGCTT-ACAAGGTAAAACA-CAGTT--ACAG-CCAA----CACGCTTATAATGA-AT-TCAC-GC-T-ACAT-T---AA---CG--TTACAGCGA-A--CACACTTATAAT-GA-ATTC-A---CG--CTTACA-GT-AAA--A-C--ACAGTT--ACA-GCGAA------CACGCTTATAA-TG-AA-TT-CACGC--TT-AC-A-GTGAAA----CGCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCTTAT-AGC---GAAGTGATTTTCATTC
gi|1 : AATTCAGA-CATAGTACATC---ACAGCTACAGCA-AACACACTAATAATGAATTTTAACACTTGACAAGGTAAACCA-CAGTT--ACGG-TGAAA---CACACGT-TAATGA-ATGTCAC-AC-T-ACATCT---AA---CG--CTTCAGCAA-A--CACACTTATAAA-AA-ATTC-A---CA--CTTACA-GT-AAA--A-C--ACAGTT--ACA-GTGAA------CA-ACTTATAT-AG-AA-TT-CACAC--TT-AC-A-GTAAAA----CGCTG--TTA-A-GCAAA--AC-ACTTAATAA-GAATTCG--ACGCATAC-AGC---GAAGTGACTTTTATTC
gi|10 : CA-GT-AAA--AGC--ACAGTT--ACATGTGAA------CACG--TATAAACG-AA-TTTCATGC--TT-AC-A-GTGAAG----CG-AG--TTTCA-
gi|12 : ACA-GT-AGA--A-C--ACAGCT--ACA-GGGGA------CCTGTTTACAA-TGAAA-AC-CATGC--TT-AC-A-GTGAAG----CGttctttgctgttctgtagtatattgaactcaatggacataac
gi|13 : TACA-GT-AAA--A-T--ACAACT--ACA-GCAAA------TACTGTTACAA-GG-AA-TT-CAAAT--TT-AC-A-GTGAattctcattcccactg
gi|16 : gtaca--ACA-GCTAA------CATGCTTATAA-TG-AA-TT-CACAC--TT-AC-A-Gggtaatc
gi|2 : AATTTAGATCAT----CATCTCAACTTTTTAAGCA-AACACACTTCTAATGAAATTCA-CCCTT-ACA--GTGAAACATCAGTT--ACAG-CCAA----CACGCTTAT-ATGATAT-TCAC-ACTT-ACAG-TGAAAA---CGCTCTACAGCCATA--CACACTTATAAT-AG-A-TC-AAATCA--CTTACA-GT-GAA--A----ACGGTT--ACACGCCAA------CACGCTTA-AA-TG-AA-GT-CACATCGTT-ACAA-GTTAAAAAACCACAG--TTACA-GCCAACAACGGCTT-ATAATGAAATC
gi|3 : C-T-ACAT-T---AA-------TTACAGTAA-AGACACACTTATAA--GA-AT-C-A---CAAACCTACAAGT-AAA--A-C--ACAGTT--ATA-G--AA------TATGCGTATAA-TG-AA-TT-CACAC--TT-AC-AGGTAAAA----CAACA--TTATA-GTGAAC-AT-GCTT-ATAACAAAGTC---ATGCTTTTGAGC---AAAGTGA-TTCCATTCac
gi|4 : ttaGTAAAACT-CAACT--ACAG-TCAA----CGCATCTATAATGA-AT-TCAT-GC-T--------------------TACAGTCA-A--CACATCTATAGT-GA-ATTC-A---TG--CTTACA-GT--CA--A-C--ACATCT--ATA-ATGAAACATGTCACGCACTTAA-TG-GA-Tgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : TACA-GT-AAA--A-C--ACGCTT--ATA-GCGGG------CGCataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaT-ACA-GCTAAAACA-CGGTTTAACAAACCAAACACCAC-TTTATA-TGA-AT-TCATTGC-TTACAG-T---AAACACGG-TTACACCAA-A--CACACTTACAATCGACGTTCTA---TG--C-TACT-GTAAAA--A-CAAACGGTT--ACA-CCAAA------CA-ACTTACAA-TG-AG-TT-C
gi|6 : tacatgtatgcaacaataCA-GTCAAATTA-C--ATAGTGCGACATGCAAA------CTTGCATATAA-TG-AA-CT-CATGC--TT-AC-
gi|6 : caatACATGCAAAC-TT-GCAT-ATAATGAACTC---ATGCTTAC-TGCTGTAAAGTGATTTTCACTCtgctgtaaagtgattttcactctctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : caatcagtcaaattacatagtgcg-AC-A-GTAAAA----TACAG--CTACA-GCAAAC-AT-GCTT-ACGATGAATTCA--A-GATTAT-AGC---AAAGTGATCATCATTCtctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|8 : aC---ACACTTACAGTAGAACACGCTTATAATTAATT-CA-CACTT-A-AAG-------------T--ATAG-C--------ACGCTTATAATGA-AT-TCAC-A-------------------G--TTATAGTGA-G--CACATCTATAAT-GA-ATTC-A---CA--GTTATA-GT--GA--A-C--ACAactgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|9 : atgaatcACA-GT-GAA--A-C--TCAGTT--ACA-GCTAA------CACGCTTATAA-TG-AATTT-CACAC--TTAAC-A-GCTGAA----CATCGGTTTACA-GCAGAC-AC-GCTT-ATAACAAGGCTAACACGCTTAT-AAT---GAtctataa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATAAAATCATATAACAAACATTTCGTGTATAACAAGCTACGTTTATATCCAAAATATTCGTCCCTAGAGCTATAAGCGTGTTTTACTGTA
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 1 2222 22222 1 1 1 111 11 111111 666666666666666666666666 1111111 111111 1111 222 111
lowQualScore : 5 4444 99999 6 3 0 7 3 0 2 666 0 99 11 666666 8 88 11 8 6 777777777777777777777777 5 6 5 77 77 5 0 5 3333333 0 3 66 3 55 7 33 000000 3 0 4 4 4 4 2 66 4 4 4 2 2222 66 99 5 6 6 6 6 1 777 6 8 444 7
lowQualScore : . .... ..... . . . . . . . ... . .. .. ...... . .. .. . . ........................ . . . .. .. . . . ....... . . .. . .. . .. ...... . . . . . . . .. . . . . .... .. .. . . . . . . ... . . ... .
lowQualScore : 5 0000 33333 7 3 7 3 3 0 5 888 6 00 00 444444 0 88 66 0 7 999999999999999999999999 7 3 7 99 44 7 1 7 9999999 1 6 33 6 00 3 22 555555 5 4 0 0 0 4 0 99 4 4 4 2 1111 22 22 7 7 7 7 3 0 444 4 0 000 0
consensus : AATTCAGATCATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAATTTCA-CACTT-ACAAGGTAAAACA-CAGTT--ACAG-CCAAACAC-GCTT-ATAATGA-AT-TCAC-GC-T-ACA-T---AA---CG--CTACA-GCGA-A--CACACTTATAAT-GA-ATTC-A---CG--CTTACA-GT-AAAA-C--ACAGTTACA-GCGAA------CACGCTTATAA-TG-AA-TT-CACGC--TT-AC-A-GTGAAA----CGCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCTTAT-AGC---GAAGTGATTTTCATTC
Reference ( family-1912 ) : AATTCAGATCATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAATTTCA-CACTT-ACAAGGTAAAACA-CAGTT--ACAG-CCAAACAC-GCTT-ATAATGA-AT-TCAC-GC-T-ACA-T---AA---CG--TTACA-GCGA-A--CACACTTATAAT-GA-ATTC-A---CG--CTTACA-GT-AAAA-C--ACAGTTACA-GCGAA------CACGCTTATAA-TG-AA-TT-CACGC--TT-AC-A-GTGAAA----CGCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCTTAT-AGC---GAAGTGATTTTCATTC
gi|1 : AATTCAGA-CATAGTACATCACAG----CTACAGCA-AACACACTAATAATGAATTTTAACACTTGACAAGGTAAACCA-CAGTT--ACGG-TGAAACAC-ACGT--TAATGA-ATGTCAC-AC-T-ACA-TCT-AA---CG--CTTCA-GCAA-A--CACACTTATAAA-AA-ATTC-A---CA--CTTACA-GT-AAAA-C--ACAGTTACA-GTGAA------CA-ACTTATAT-AG-AA-TT-CACAC--TT-AC-A-GTAAAA----CGCTG--TTA-A-GCAAA--AC-ACTTAATAA-GAATTCG--ACGCATAC-AGC---GAAGTGACTTTTATTC
gi|10 : CA-GT-AAAAGC--ACAGTTACATGTGAA------CACG--TATAAACG-AA-TTTCATGC--TT-AC-A-GTGAAG----CG-AG--TTTCA-
gi|12 : ACA-GT-AGAA-C--ACAGCTACA-GGGGA------CCTGTTTACAA-TGAAA-AC-CATGC--TT-AC-A-GTGAAG----CGttctttgctgttctgtagtatattgaactcaatggacataac
gi|13 : TACA-GT-AAAA-T--ACAACTACA-GCAAA------TACTGTTACAA-GG-AA-TT-CAAAT--TT-AC-A-GTGAattctcattcccactg
gi|16 : gtacaACA-GCTAA------CATGCTTATAA-TG-AA-TT-CACAC--TT-AC-A-Gggtaatc
gi|2 : AATTTAGATCAT----CATCTCAACTTTTTA-AGCA-AACACACTTCTAATGAAATTCA-CCCTT-ACA--GTGAAACATCAGTT--ACAG-CC-AACAC-GCTT-AT-ATGATAT-TCAC-ACTT-ACAGTGAAAA---CGCTCTACA-GCCATA--CACACTTATAAT-AG-A-TC-AAATCA--CTTACA-GT-GAAA----ACGGTTACACGCCAA------CACGCTTA-AA-TG-AA-GT-CACATCGTT-ACAA-GTTAAAAAACCACAG--TTACA-GCCAACAACGGCTT-ATAATGAAATC
gi|3 : C-T-ACA-TT--AA-------TTACA-GTAA-AGACACACTTATAA--GA-AT-C-A---CAAACCTACAAGT-AAAA-C--ACAGTTATA-G--AA------TATGCGTATAA-TG-AA-TT-CACAC--TT-AC-AGGTAAAA----CAACA--TTATA-GTGAAC-AT-GCTT-ATAACAAAGTC---ATGCTTTTGAGC---AAAGTGA-TTCCATTCac
gi|4 : ttaGTAAAACT-CAACT--ACAG-TCAA-CGC-ATCT-ATAATGA-AT-TCAT-GC-T-------------------TACA-GTCA-A--CACATCTATAGT-GA-ATTC-A---TG--CTTACA-GT--CAA-C--ACATCTATA-ATGAAACATGTCACGCACTTAA-TG-GA-Tgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : TACA-GT-AAAA-C--ACGCTTATA-GCGGG------CGCataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaT-ACA-GCTAAAACA-CGGTTTAACAAACCAAACACCACTTTATA-TGA-AT-TCATTGC-TTACAGT---AAACACGG-TTACA-CCAA-A--CACACTTACAATCGACGTTCTA---TG--C-TACT-GTAAAAA-CAAACGGTTACA-CCAAA------CA-ACTTACAA-TG-AG-TT-C
gi|6 : tacatgtatgcaacaata-TCAA-AT-T-ACA-T---AG---TG--CGACATGCAA-A--CTTGCATATAAT-GA-ACTC-A---TG--CTTAC
gi|6 : caatcagACATGCAAAC-TT-GCAT-ATAATGAACTC---ATGCTTAC-TGCTGTAAAGTGATTTTCACTCtgctgtaaagtgattttcactctctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : caatcagtcaaattacatagtgcg-AC-A-GTAAAA----TACAG--CTACA-GCAAAC-AT-GCTT-ACGATGAATTCA--A-GATTAT-AGC---AAAGTGATCATCATTCtctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|8 : aCACAC----TTACAGTAGAACACGCTTATAATTAATT-CA-CACTT-A-AAG-------------T--ATAG-C-----AC-GCTT-ATAATGA-AT-TCAC-A------------------G--TTATA-GTGA-G--CACATCTATAAT-GA-ATTC-A---CA--GTTATA-GT--GAA-C--ACAactgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|9 : atgaatcACA-GT-GAAA-C--TCAGTTACA-GCTAA------CACGCTTATAA-TG-AATTT-CACAC--TTAAC-A-GCTGAA----CATCGGTTTACA-GCAGAC-AC-GCTT-ATAACAAGGCTAACACGCTTAT-AAT---GAtctataa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATAAAATCATATAACAAACATTTCGTGTATAACAAGCTACGTTTATATCCAAAATATTCGTCCCTAGAGCTATAAGCGTGTTTTACTGTA
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 1 2222 22222 1 1 1 111111111111111 333 1 5555555555555555555 1111111 11 1111111111 1 222 111
lowQualScore : 5 4444 99999 6 3 0 6 3 444444444444444 11 444 0 3 3 0 8 6666666666666666666 6 6 5 77 5 5 11 0 9999999 3 3 5 3 44 888888 999999 3 3 444 3 3 3 4 4 4 55 3 3 3 00 0000000000 66 4 5 77 5 0 2 111 3 6 6 444 7
lowQualScore : . .... ..... . . . . . ............... .. ... . . . . . ................... . . . .. . . .. . ....... . . . . .. ...... ...... . . ... . . . . . . .. . . . .. .......... .. . . .. . . . ... . . . ... .
lowQualScore : 5 0000 33333 7 3 7 0 3 777777777777777 00 555 8 2 2 0 0 0000000000000000000 7 3 7 99 7 7 99 1 6666666 3 3 8 3 66 666666 666666 3 6 222 6 6 6 0 0 0 55 6 6 6 44 4444444444 99 4 0 22 0 5 8 222 7 7 7 000 0
consensus : AATTCAGATCATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAA-TTCA-CACTT-ACAAGGTAAAACA-CAGTTACAGTC-AACACGCTTATAATGA-AT-TCACAC-TACA-T---AACG--CTACA-GCGA-A--CAC-ACTT-ATAATGAATTCA---CG--CTTACA-G-TAAAA-CACGGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-G-A-A-TT-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
Reference ( family-1912 ) : AATTCAGATCATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAATTTCA-CACTT-ACAAGGTAAAACA-CAGTTACAGCCAAACACGCTTATAATGA-AT-TCACGC-TACA-T---AACG--CTACA-GCGA-A--CAC-ACTT-ATAATGAATTCA---CG--CTTACA-G-TAAAA-CACAGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-G-A-A-TT-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
gi|1 : AATTCAGA-CATAGTACATCACAG----CTACAGCA-AACACACTAATAATGAATTTTAACACTTGACAAGGTAAACCA-CAGTTACGGTGAAACACACGT-TAATGA-ATGTCACAC-TACA-TCT-AACG--CTTCA-GCAA-A--CAC-ACTT-ATAAAAAATTCA---CA--CTTACA-G-TAAAA-CACAGTT--ACA-G--TGAA------CA--ACTTATA-T-A-G-A-A-TT-C-A-CAC--TT-AC-A-GT-AAAA----C--GCTG--TTA-A-GCAAA--AC-ACTTAATAA-GAATTCG--ACGCA-TAC-AGC---GAAGTGACTTTTATTC
gi|10 : CA-G-TAAAAGCACAGTT--ACATG--TGAA------CA-CG--TATA-AAC-G-A-A-TTTC-A-TGC--TT-AC-A-GT-GAAG----C--G-AG--TTTCA-
gi|12 : ACA-G-TAGAA-CACAGCT--ACA-G--GGGA------CC-TGTTTACA-A-T-GAA-A-AC-C-A-TGC--TT-AC-A-GT-GAAG----C--Gttctttgctgttctgtagtatattgaactcaatggacataac
gi|13 : TACA-G-TAAAA-TACAACT--ACA-G--CAAA------TA-CTGTTACA-A-G-G-A-A-TT-C-A-AAT--TT-AC-A-GT-GAattctcattcccactg
gi|16 : gtaca--ACA-G--CTAA------CA-TGCTTATA-A-T-G-A-A-TT-C-A-CAC--TT-AC-A-Gggtaatc
gi|2 : AATTTAGATCAT----CATCTCAACTTTTTA-AGCA-AACACACTTCTAATGAAATTCA-CCCTT-ACA--GTGAAACATCAGTTACAGCC-AACACGCTTAT-ATGATAT-TCACACTTACAGTGAAAACGCTCTACA-GCCATA--CAC-ACTT-ATAATAGA-TCAAATCA--CTTACA-G-TGAAA--ACGGTT--ACACG--CCAA------CA-CGCTTA-A-A-T-G-A-A-GT-C-A-CATCGTT-ACAA-GT-TAAAAAACC--ACAG--TTACA-GCCAACAACGGCTT-ATAATGAAATC
gi|3 : C-TACA-TT--AAT----TACA-GTAA-AGACAC-ACTT-ATAA-GAAT-CA---CAAACCTACAAG-TAAAA-CACAGTT--ATA-G----AA------TA-TGCGTATA-A-T-G-A-A-TT-C-A-CAC--TT-AC-AGGT-AAAA----C--AACA--TTATA-GTGAAC-AT-GCTT-ATAACAAAGTC---ATGCT-TTTGAGC---AAAGTGA-TTCCATTCac
gi|4 : ttaGTAAAACT-CAACTACAGTC-AACGCATCTATAATGA-AT-TCATGC-T---------------TACA-GTCA-A--CAC-ATCT-ATAGTGAATTCA---TG--CTTACA-G-T-CAA-CACATCT--ATA-A--TGAAACATGTCA-CGCACTTA-A-T-G-G-A-Tgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : TACA-G-TAAAA-CACGCTT--ATA-G--CGGG------CG-Cataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaTACA-GCTAAAA-CACGGTTTAACA-AACCAAA------CACCACTT-TATA-T-G-A-A-TT-C-ATTGC--TT-AC-A-GT--AAA----C--ACGG--TTACA-CCAAAC-AC-ACTT-ACAA-----TCG--ACGTTCTAT-
gi|5 : tacatgtatgcaacaataCAA-A--CACCACTTTATA-TGAATTCAT--TG--CTTACA-G-T-AAA-CACGGTT--ACA-C--CAAA------CA-CACTTACA-A-TCG-ACG-TT-CTA-TGC---T-AC-T-GTAAAAA----CAAACGG--TTACA-CCAAAC-A--ACTT-ACAATGAGTTCgctactgtaaaaacaaacggttacaccaaacaacttacaatgagttc
gi|6 : tacatgtatgcaacaatatacagctaaaacacggtttaacaaac-TCAAAT-TACA-T---AGTG--CGACATGCAA-A--CTT-GCAT-ATAATGAACTCA---TG--CTTAC
gi|6 : caatcagACATGCAAAC-TT-GCAT-ATAATGAACTC---ATGCT-TAC-TGCTGTAAAGTGATTTTCACTCtgctgtaaagtgattttcactctctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : caatcagtcaaattacatagtgcg-AC-A-GT-AAAA----T--ACAG--CTACA-GCAAAC-AT-GCTT-ACGATGAATTCA--A-GAT-TAT-AGC---AAAGTGATCATCATTCtctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|8 : aCACAC----TTACAGTAGAACACGCTTATAATTAA-TTCA-CACTT-A-AAG-------------TATAG-----CACGCTTATAATGA-AT-TCACA--------------G--TTATA-GTGA-G--CAC-ATCT-ATAATGAATTCA---CA--GTTATA-G-T-GAA-CACAactgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|9 : atgaatcACA-G-TGAAA-CTCAGTT--ACA-G--CTAA------CA-CGCTTATA-A-T-G-A-ATTT-C-A-CAC--TTAAC-A-GC-TGAA----C--ATCGGTTTACA-GCAGAC-AC-GCTT-ATAACAAGGCTAACACGCT-TAT-AAT---GAtctataa
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATAAAATCATATAACAAACATTTCGTGTATAACAAGCTACGTTTATATCCAAAATATTCGTCCCTAGAGCTATAAGCGTGTTTTACTGTA
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 1 11111 11 666666666666666666666 1111 111111 5555555555555555555 11 11111111 11 1111111111 1 222 111
lowQualScore : 5 7 88888 8 8 11 1 0 333333333333333333333 88 6 4444 0 4 3 999999 1111111111111111111 0 5 8 4 00 4 4 33 55555555 2 2 0 2 44 666666 999999 3 3 444 3 3 3 4 4 4 55 3 3 3 00 0000000000 66 4 5 77 5 0 2 111 3 6 6 444 7
lowQualScore : . . ..... . . .. . . ..................... .. . .... . . . ...... ................... . . . . .. . . .. ........ . . . . .. ...... ...... . . ... . . . . . . .. . . . .. .......... .. . . .. . . . ... . . . ... .
lowQualScore : 5 3 00000 0 0 00 8 8 999999999999999999999 33 7 2222 7 3 2 999999 6666666666666666666 2 0 2 4 66 4 4 77 77777777 9 9 1 9 22 666666 666666 3 6 222 6 6 6 0 0 0 55 6 6 6 44 4444444444 99 4 0 22 0 5 8 222 7 7 7 000 0
consensus : AATTCAGATCATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAA-TTC--ACGCTT-A---CAAGGTAAA-CA-CAGTTACAGTCAA-C----ACGCNTATAATGA---AT-TCACGC-TACA-T---AAC-G--CTACA-GCGA-A--CAC-ACTT-ATAACGAATTCA---C-G--CTTACA-G-TAAAA-CACGGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
Reference ( family-1912 ) : AATTCAGATCATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAA-TTC--ACACTT-A---CAAGGTAAAACA-CAGTTACAGTCAA-C----ACGCTTATAATGA---AT-TCACAC-TACA-T---AAC-G--CTACA-GCGA-A--CAC-ACTT-ATAATGAATTCA---C-G--CTTACA-G-TAAAA-CACGGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
gi|1 : AATTCAGA-CATAGTACATCACAG----CTACAGCA-AACACACTAATAATGAA-TTTTAACACTTGA---CAAGGTAAACCA-CAGTTACGGTGAAAC----ACACGT-TAATGA---ATGTCACAC-TACA-TCT-AAC-G--CTTCA-GCAA-A--CAC-ACTT-ATAAAAAATTCA---C-A--CTTACA-G-TAAAA-CACAGTT--ACA-G--TGAA------CA--ACTTATA-T-A-GA-A-T-T-C-A-CAC--TT-AC-A-GT-AAAA----C--GCTG--TTA-A-GCAAA--AC-ACTTAATAA-GAATTCG--ACGCA-TAC-AGC---GAAGTGACTTTTATTC
gi|10 : CA-G-TAAAAGCACAGTT--ACATG--TGAA------CA-CG--TATA-AAC-GA-A-T-TTC-A-TGC--TT-AC-A-GT-GAAG----C--G-AG--TTTCA-
gi|11 : TACA-G-TAAAA-CACGCTT--ATA-G--Cttctttgctgttctgtagtatattgaactcaatggacataac
gi|12 : taataaaatcatataacaaacatttcgtgtataacaagctacgtttatatccaaaatattcgtccctagaACA-G-TAGAA-CACAGCT--ACA-G--GGGA------CC-TGTTTACA-A-T-GA-A-AAC-C-A-TGC--TT-AC-A-GT-GAAG----C--G
gi|13 : TACA-G-TAAAA-TACAACT--ACA-G--CAAA------TA-CTGTTACA-A-G-GA-A-T-T-C-A-AAT--TT-AC-A-GT-GAattctcattcccactg
gi|16 : gtaca--ACA-G--CTAA------CA-TGCTTATA-A-T-GA-A-T-T-C-A-CAC--TT-AC-A-Gggtaatc
gi|2 : AATTTAGATCAT----CATCTCAACTTTTTA-AGCA-AACACACTTCTAATGAAATTC--ACCCTT-A---CA--GTGAAACATCAGTTACAGCCAA-C----ACGCTTAT-ATGAT--AT-TCACACTTACAGTGAAAAC-GCTCTACA-GCCATA--CAC-ACTT-ATAATAGA-TCAAATC-A--CTTACA-G-TGAAA--ACGGTT--ACACG--CCAA------CA-CGCTTA-A-A-T-GA-A-G-T-C-A-CATCGTT-ACAA-GT-TAAAAAACC--ACAG--TTACA-GCCAACAACGGCTT-ATAATGAAATC
gi|3 : AC-TACA-TT--AAT-----TACA-GTAA-AGACAC-ACTT-ATAA-GAAT-CA---C-AAACCTACAAG-TAAAA-CACAGTT--ATA-G----AA------TA-TGCGTATA-A-T-GA-A-T-T-C-A-CAC--TT-AC-AGGT-AAAA----C--AACA--TTATA-GTGAAC-AT-GCTT-ATAACAAAGTC---ATGCT-TTTGAGC---AAAGTGA-TTCCATTCac
gi|4 : ttGTAAAACT-CAACTACAGTCAA-C----GCATCTATAATGA---AT-TCATGC-T----------------TACA-GTCA-A--CAC-ATCT-ATAGTGAATTCA---T-G--CTTACA-G-T-CAA-CACATCT--ATA-A--TGAAACATGTCA-CGCACTTA-A-T-GG-A-T-gcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : TCATGC----TTACAGTC-AACACATCTATAGTGAA-TTC--ATGC-----------------------TTACAGTCAA-C----ACATCTATAATGAAACATGTCACGC--ACT-T---AATGG--ATATA-AC-A-A--CA---------AACGAATT-G---T-G--TTTACA-T-TAAAT-CAataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|4 : gtaaaactcaactacagtcaacgcatctataatgaatTACA-G-TAAAA-CACGCTT--ATA-G--CGGG------CG-Ctcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaTACA-GCTAAAA-CACGGTTTAACA-AACCAAA------CACCACTT-TATA-T-GA-A-T-T-C-ATTGC--TT-AC-A-GT--AAA----C--ACGG--TTACA-CCAAAC-AC-ACTT-ACAA-----TCG--ACGTTCTAT-
gi|5 : tacatgtatgcaacaataCAA-A--CACCACTTTATA-TGAATTCA---TTG--CTTACA-G-TAAA--CACGGTT--ACA-C--CAAA------CA-CACTTACA-A-TCGACG-T-T-CTA-TGC---T-AC-T-GTAAAAA----CAAACGG--TTACA-CCAAAC-A--ACTT-ACAATGAGTTCgctactgtaaaaacaaacggttacaccaaacaacttacaatgagttc
gi|6 : tacatgtatgcaacaatatacagctaaaacacggtttaacaaac-TCAAAT-TACA-T---AGT-G--CGACATGCAA-A--CTT-GCAT-ATAATGAACTCA---T-G--CTTAC
gi|6 : caatcagACATGCAAAC-TT-GCAT-ATAATGAACTC---ATGCT-TAC-TGCTGTAAAGTGATTTTCACTCtgctgtaaagtgattttcactctctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : caatcagtcaaattacatagtgcg-AC-A-GT-AAAA----T--ACAG--CTACA-GCAAAC-AT-GCTT-ACGATGAATTCA--A-GAT-TAT-AGC---AAAGTGATCATCATTCtctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : aACAGTAAAATACAG----CTACAGCA-AACATGCTTACGATGAA-TTC--AAGATT-ATAGCAAAGT-GATCATCATTCACTGT-AA-CTTTTAAACATATCCTGA---A---CATAA-TGGA-T----AC-A--TTA-A-ACGA-AT-TAC-ATTC-ATATCGAATCCA---actgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|8 : aCACAC----TTACAGTAGAACACGCTTATAATTAA-TTC--ACACTT-A----AAG-------------TATAG-----C----ACGCTTATAATGA---AT-TCACA---------------G--TTATA-GTGA-G--CAC-ATCT-ATAATGAATTCA---C-A--GTTATA-G-T-GAA-CACaaaattgtt
gi|9 : atgaatcACA-G-TGAAA-CTCAGTT--ACA-G--CTAA------CA-CGCTTATA-A-T-GA-ATT-T-C-A-CAC--TTAAC-A-GC-TGAA----C--ATCGGTTTACA-GCAGAC-AC-GCTT-ATAACAAGGCTAACACGCT-TAT-AAT---GAatctataa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 222 111111 555555555555555555555 1111 222222 66666666666666666666 11 111111 11 1111111111 1 222 111
lowQualScore : 555 3 0 6 999999 2 6 6 99 777777777777777777777 88 6 4444 0 1 3 111111 77777777777777777777 1 8 5 11 5 5 99 3 999999 2 2 0 2 44 8888 0 999999 3 3 444 3 3 3 4 4 4 55 3 3 3 00 0000000000 66 4 5 77 5 0 2 111 3 6 6 444 7
lowQualScore : ... . . . ...... . . . .. ..................... .. . .... . . . ...... .................... . . . .. . . .. . ...... . . . . .. .... . ...... . . ... . . . . . . .. . . . .. .......... .. . . .. . . . ... . . . ... .
lowQualScore : 777 2 8 0 333333 5 7 7 22 000000000000000000000 33 7 2222 7 0 2 888888 88888888888888888888 7 5 0 99 0 0 66 2 222222 9 9 1 9 22 6666 2 666666 3 6 222 6 6 6 0 0 0 55 6 6 6 44 4444444444 99 4 0 22 0 5 8 222 7 7 7 000 0
consensus : AATTCAGAT--CATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAA-TTC--ACGCTT-A---CAAGGTAAAC-A-CAGTTACAGTCAA-C----ACGCNTATAATGA---AT-TCACGC-TACA-T---AAC-G--CTACAGCGA-A--CAC-ACTT-ATAACGAATTCA---C--GCTTAC-AG-TAAAA-CACGGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
Reference ( family-1912 ) : AATTCAGAT--CATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAA-TTC--ACGCTT-A---CAAGGTAAAC-A-CAGTTACAGTCAA-C----ACGCNTATAATGA---AT-TCACGC-TACA-T---AAC-G--CTACAGCGA-A--CAC-ACTT-ATAACGAATTCA---C--GCTTAC-AG-TAAAA-CACGGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
gi|1 : AATTCAGA---CATAGTACATCACAG----CTACAGCA-AACACACTAATAATGAA-TTTTAACACTTGA---CAAGGTAAACCA-CAGTTACGGTGAAAC----ACACGT-TAATGA---ATGTCACAC-TACA-TCT-AAC-G--CTTCAGCAA-A--CAC-ACTT-ATAAAAAATTCA---C--ACTTAC-AG-TAAAA-CACAGTT--ACA-G--TGAA------CA--ACTTATA-T-A-GA-A-T-T-C-A-CAC--TT-AC-A-GT-AAAA----C--GCTG--TTA-A-GCAAA--AC-ACTTAATAA-GAATTCG--ACGCA-TAC-AGC---GAAGTGACTTTTATTC
gi|10 : C-AG-TAAAAGCACAGTT--ACATG--TGAA------CA-CG--TATA-AAC-GA-A-T-TTC-A-TGC--TT-AC-A-GT-GAAG----C--G-AG--TTTCA-
gi|11 : TAC-AG-TAAAA-CACGCTT--ATA-G--Cttctttgctgttctgtagtatattgaactcaatggacataac
gi|12 : taataaaatcatataacaaacatttcgtgtataacaagctacgtttatatccaaaatattcgtccctagaAC-AG-TAGAA-CACAGCT--ACA-G--GGGA------CC-TGTTTACA-A-T-GA-A-AAC-C-A-TGC--TT-AC-A-GT-GAAG----C--G
gi|13 : TAC-AG-TAAAA-TACAACT--ACA-G--CAAA------TA-CTGTTACA-A-G-GA-A-T-T-C-A-AAT--TT-AC-A-GT-GAattctcattcccactg
gi|16 : gtaca--ACA-G--CTAA------CA-TGCTTATA-A-T-GA-A-T-T-C-A-CAC--TT-AC-A-Gggtaatc
gi|2 : AATTTAGAT--CAT----CATCTCAACTTTTTA-AGCA-AACACACTTCTAATGAAATTC--ACCCTT-A---CAGTG-AAAC-ATCAGTTACAGCCAA-C----ACGCTTAT-ATGAT--AT-TCACACTTACAGTGAAAAC-GCTCTACAGCCATA--CAC-ACTT-ATAATAGA-TCAAATC--ACTTAC-AG-TGAAA--ACGGTT--ACACG--CCAA------CA-CGCTTA-A-A-T-GA-A-G-T-C-A-CATCGTT-ACAA-GT-TAAAAAACC--ACAG--TTACA-GCCAACAACGGCTT-ATAATGAAATC
gi|3 : C-TACA-TT--AAT-----TACAGTAA-AGACAC-ACTT-ATAA-GAA-TCA---CAAACCTACAAG-TAAAA-CACAGTT--ATA-----GAA------TA-TGCGTATA-A-T-GA-A-T-T-C-A-CAC--TT-AC-AGGT-AAAA----C--AACA--TTATA-GTGAAC-AT-GCTT-ATAACAAAGTC---ATGCT-TTTGAGC---AAAGTGA-TTCCATTCac
gi|4 : ttaAAAC-T-CAACTACAGTCAA-C----GCATCTATAATGA---AT-TCATGC-T----------------TACAGTCA-A--CAC-ATCT-ATAGTGAATTCA---T--GCTTAC-AG-T-CAA-CACATCT--ATA-A--TGAAACATGTCA-CGCACTTA-A-T-GG-A-T-gcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : gtaTCATGC----TTACAGTC-AACACATCTATAGTGAA-TTC--ATGC-----------------------TTACAGTCAA-C----ACATCTATAATGAAACATGTCACGC--ACT-T---AATGG--ATATAAC-A-A--CA---------AACGAATT-G---T--GTTTAC-AT-TAAAT-CAataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|4 : gtaaaactcaactacagtcaacgcatctataatgaatTAC-AG-TAAAA-CACGCTT--ATA-G--CGGG------CG-Ctcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaTAC-AGCTAAAA-CACGGTTTAACA-AACCAAA------CACCACTT-TATA-T-GA-A-T-T-C-ATTGC--TT-AC-A-GT--AAA----C--ACGG--TTACA-CCAAAC-AC-ACTT-ACAA-----TCG--ACGTTCTAT-
gi|5 : tacatgtatgcaacaataCAA-A--CACCACTTTATA-TGAATTCA---TT-GCTTAC-AG-TAAA--CACGGTT--ACA-C--CAAA------CA-CACTTACA-A-TCGACG-T-T-CTA-TGC---T-AC-T-GTAAAAA----CAAACGG--TTACA-CCAAAC-A--ACTT-ACAATGAGTTCgctactgtaaaaacaaacggttacaccaaacaacttacaatgagttc
gi|6 : tacatgtatgcaacaatatacagctaaaacacggtttaacaaacTCAAATTACATAGTGCG--ACAT---------GCA-AACTTGCATATAATGAA-CTC--ATGCTT-A---C
gi|6 : caatcagACATGCAAAC-TT-GCAT-ATAATGAACTC---ATGCT-TAC-TGCTGTAAAGTGATTTTCACTCtgctgtaaagtgattttcactctctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : caatcagtcaaattacatagtgcg-AC-A-GT-AAAA----T--ACAG--CTACA-GCAAAC-AT-GCTT-ACGATGAATTCA--A-GAT-TAT-AGC---AAAGTGATCATCATTCtctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : aACAGTAAAATACAG----CTACAGCA-AACATGCTTACGATGAA-TTC--AAGATT-ATAGCAAAGTGATC-ATCATTCACTGT-AA-CTTTTAAACATATCCTGA---A---CATAA-TGGA-T----AC-A--TTA-AACGA-AT-TAC-ATTC-ATATCGAATCCA---actgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|8 : aCACAC----TTACAGTAGAACACGCTTATAATTAA-TTC--ACACTT-A----AAG-------------TATAG-----C----ACGCTTATAATGA---AT-TCACA---------------G--TTATAGTGA-G--CAC-ATCT-ATAATGAATTCA---C--AGTTAT-AG-T-GAA-CACaaaattgtt
gi|9 : atgaatcAC-AG-TGAAA-CTCAGTT--ACA-G--CTAA------CA-CGCTTATA-A-T-GA-ATT-T-C-A-CAC--TTAAC-A-GC-TGAA----C--ATCGGTTTACA-GCAGAC-AC-GCTT-ATAACAAGGCTAACACGCT-TAT-AAT---GAatctataa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 222 111111 555555555555555555555 1111 222222 66666666666666666666 11 111111 11 1111111111 1 222 111
lowQualScore : 555 3 0 6 999999 2 6 6 99 777777777777777777777 88 6 4444 0 1 3 111111 77777777777777777777 1 8 5 11 5 5 99 3 999999 2 2 0 2 44 8888 0 999999 3 3 444 3 3 3 4 4 4 55 3 3 3 00 0000000000 66 4 5 77 5 0 2 111 3 6 6 444 7
lowQualScore : ... . . . ...... . . . .. ..................... .. . .... . . . ...... .................... . . . .. . . .. . ...... . . . . .. .... . ...... . . ... . . . . . . .. . . . .. .......... .. . . .. . . . ... . . . ... .
lowQualScore : 777 2 8 0 333333 5 7 7 22 000000000000000000000 33 7 2222 7 0 2 888888 88888888888888888888 7 5 0 99 0 0 66 2 222222 9 9 1 9 22 6666 2 666666 3 6 222 6 6 6 0 0 0 55 6 6 6 44 4444444444 99 4 0 22 0 5 8 222 7 7 7 000 0
consensus : AATTCAGAT--CATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAA-TTC--ACGCTT-A---CAAGGTAAAC-A-CAGTTACAGTCAA-C----ACGCNTATAATGA---AT-TCACGC-TACA-T---AAC-G--CTACAGCGA-A--CAC-ACTT-ATAACGAATTCA---C--GCTTAC-AG-TAAAA-CACGGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
Reference ( family-1912 ) : AATTCAGAT--CATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAA-TTC--ACGCTT-A---CAAGGTAAAC-A-CAGTTACAGTCAA-C----ACGCNTATAATGA---AT-TCACGC-TACA-T---AAC-G--CTACAGCGA-A--CAC-ACTT-ATAACGAATTCA---C--GCTTAC-AG-TAAAA-CACGGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
gi|1 : AATTCAGA---CATAGTACATCACAG----CTACAGCA-AACACACTAATAATGAA-TTTTAACACTTGA---CAAGGTAAACCA-CAGTTACGGTGAAAC----ACACGT-TAATGA---ATGTCACAC-TACA-TCT-AAC-G--CTTCAGCAA-A--CAC-ACTT-ATAAAAAATTCA---C--ACTTAC-AG-TAAAA-CACAGTT--ACA-G--TGAA------CA--ACTTATA-T-A-GA-A-T-T-C-A-CAC--TT-AC-A-GT-AAAA----C--GCTG--TTA-A-GCAAA--AC-ACTTAATAA-GAATTCG--ACGCA-TAC-AGC---GAAGTGACTTTTATTC
gi|10 : C-AG-TAAAAGCACAGTT--ACATG--TGAA------CA-CG--TATA-AAC-GA-A-T-TTC-A-TGC--TT-AC-A-GT-GAAG----C--G-AG--TTTCA-
gi|11 : TAC-AG-TAAAA-CACGCTT--ATA-G--Cttctttgctgttctgtagtatattgaactcaatggacataac
gi|12 : taataaaatcatataacaaacatttcgtgtataacaagctacgtttatatccaaaatattcgtccctagaAC-AG-TAGAA-CACAGCT--ACA-G--GGGA------CC-TGTTTACA-A-T-GA-A-AAC-C-A-TGC--TT-AC-A-GT-GAAG----C--G
gi|13 : TAC-AG-TAAAA-TACAACT--ACA-G--CAAA------TA-CTGTTACA-A-G-GA-A-T-T-C-A-AAT--TT-AC-A-GT-GAattctcattcccactg
gi|16 : gtaca--ACA-G--CTAA------CA-TGCTTATA-A-T-GA-A-T-T-C-A-CAC--TT-AC-A-Gggtaatc
gi|2 : AATTTAGAT--CAT----CATCTCAACTTTTTA-AGCA-AACACACTTCTAATGAAATTC--ACCCTT-A---CAGTG-AAAC-ATCAGTTACAGCCAA-C----ACGCTTAT-ATGAT--AT-TCACACTTACAGTGAAAAC-GCTCTACAGCCATA--CAC-ACTT-ATAATAGA-TCAAATC--ACTTAC-AG-TGAAA--ACGGTT--ACACG--CCAA------CA-CGCTTA-A-A-T-GA-A-G-T-C-A-CATCGTT-ACAA-GT-TAAAAAACC--ACAG--TTACA-GCCAACAACGGCTT-ATAATGAAATC
gi|3 : C-TACA-TT--AAT-----TACAGTAA-AGACAC-ACTT-ATAA-GAA-TCA---CAAACCTACAAG-TAAAA-CACAGTT--ATA-----GAA------TA-TGCGTATA-A-T-GA-A-T-T-C-A-CAC--TT-AC-AGGT-AAAA----C--AACA--TTATA-GTGAAC-AT-GCTT-ATAACAAAGTC---ATGCT-TTTGAGC---AAAGTGA-TTCCATTCac
gi|4 : ttaAAAC-T-CAACTACAGTCAA-C----GCATCTATAATGA---AT-TCATGC-T----------------TACAGTCA-A--CAC-ATCT-ATAGTGAATTCA---T--GCTTAC-AG-T-CAA-CACATCT--ATA-A--TGAAACATGTCA-CGCACTTA-A-T-GG-A-T-gcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : gtaTCATGC----TTACAGTC-AACACATCTATAGTGAA-TTC--ATGC-----------------------TTACAGTCAA-C----ACATCTATAATGAAACATGTCACGC--ACT-T---AATGG--ATATAAC-A-A--CA---------AACGAATT-G---T--GTTTAC-AT-TAAAT-CAataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|4 : gtaaaactcaactacagtcaacgcatctataatgaatTAC-AG-TAAAA-CACGCTT--ATA-G--CGGG------CG-Ctcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaTAC-AGCTAAAA-CACGGTTTAACA-AACCAAA------CACCACTT-TATA-T-GA-A-T-T-C-ATTGC--TT-AC-A-GT--AAA----C--ACGG--TTACA-CCAAAC-AC-ACTT-ACAA-----TCG--ACGTTCTAT-
gi|5 : tacatgtatgcaacaataCAA-A--CACCACTTTATA-TGAATTCA---TT-GCTTAC-AG-TAAA--CACGGTT--ACA-C--CAAA------CA-CACTTACA-A-TCGACG-T-T-CTA-TGC---T-AC-T-GTAAAAA----CAAACGG--TTACA-CCAAAC-A--ACTT-ACAATGAGTTCgctactgtaaaaacaaacggttacaccaaacaacttacaatgagttc
gi|6 : tacatgtatgcaacaatatacagctaaaacacggtttaacaaacTCAAATTACATAGTGCG--ACAT---------GCA-AACTTGCATATAATGAA-CTC--ATGCTT-A---C
gi|6 : caatcagACATGCAAAC-TT-GCAT-ATAATGAACTC---ATGCT-TAC-TGCTGTAAAGTGATTTTCACTCtgctgtaaagtgattttcactctctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : caatcagtcaaattacatagtgcg-AC-A-GT-AAAA----T--ACAG--CTACA-GCAAAC-AT-GCTT-ACGATGAATTCA--A-GAT-TAT-AGC---AAAGTGATCATCATTCtctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : aACAGTAAAATACAG----CTACAGCA-AACATGCTTACGATGAA-TTC--AAGATT-ATAGCAAAGTGATC-ATCATTCACTGT-AA-CTTTTAAACATATCCTGA---A---CATAA-TGGA-T----AC-A--TTA-AACGA-AT-TAC-ATTC-ATATCGAATCCA---actgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|8 : aCACAC----TTACAGTAGAACACGCTTATAATTAA-TTC--ACACTT-A----AAG-------------TATAG-----C----ACGCTTATAATGA---AT-TCACA---------------G--TTATAGTGA-G--CAC-ATCT-ATAATGAATTCA---C--AGTTAT-AG-T-GAA-CACaaaattgtt
gi|9 : atgaatcAC-AG-TGAAA-CTCAGTT--ACA-G--CTAA------CA-CGCTTATA-A-T-GA-ATT-T-C-A-CAC--TTAAC-A-GC-TGAA----C--ATCGGTTTACA-GCAGAC-AC-GCTT-ATAACAAGGCTAACACGCT-TAT-AAT---GAatctataa
blockSeqs : TTA A T ACTTTT C G A . ATAGCAAAGTGATCATCAT CC . TTTT T A AACATG ACTTACAGTGAAAACGCTC C C T GA C T AT T AATC A C G TA AAC ACATGT C T AC C T A T T T CG A A G AA AAACCACA GT T A CG . T A AAC T C G TGT T
blockSeqs : T A T CT C . . . ACAGTGAAACATCAG TC . . C A TAT GCACTTAATGGA C A . T . . GT T CAA . . . . TG . . . TC . . . . . . . . . . G CAAACG . . . T . C G G C . . . T
blockSeqs : . A GC C . . . AAAG TC . . C C AT AATGGATACAT C C . . . . AC T TT . . . . CG . . . T . . . . . . . . . . G CAAC . . . C . T T A T . . . .
blockSeqs : . CT . . . . . T . . A A AT GCT T A . . . . TC T T . . . . G . . . G . . . . . . . . . . G CACG . . . T . T C . C . . .
blockSeqs : T . . . . . . . T . A AGT T G . . . . AT T T . . . . G . . . T . . . . . . . . . . T TACA . . . T . T T . . . .
blockSeqs : . G . . . . A . C . . . . G . . . T . . . . . . . . . . A CATC . . . C . C G
blockSeqs : . . . . . T . . . . . G . . . T . . . . . . . . . . A CGA . . . . . . .
blockSeqs : . . . . A . . . T . . . . . . . . . . T .
blockSeqs : . . . . G . . . T . . . . . . . . . . .
blockSeqs : . . . . C . . . T . . . . . .
blockSeqs : . . . . G . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqCons : ** AAG****************** AT**** AGTGGACT************ G**
originalCons : AATTCAGAT--CATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAA-TTC--ACGCTT-A---CAAGGTAAAC-A-CAGTTACAGTCAA-C----ACGCNTATAATGA---AT-TCACGC-TACA-T---AAC-G--CTACAGCGA-A--CAC-ACTT-ATAACGAATTCA---C--GCTTAC-AG-TAAAA-CACGGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
finalCons : AATTCAGAT--CATAGTACATCACAN----TTACAGCA-AACACGCTTATAATGAA-TTC--ACGCTTAAG------------------TTACAGTCAA-C----ACGCNTATAATGAAT----TCACAGTGGACT------------TACAGCGA-A--CAC-ACTT-ATAACGAATTCA---C--GCTTAC-AG-TAAAA-CACGGTT--ACA-G--CGAA------CA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 11 111111 11 1111111111 1 222 111
lowQualScore : 5 7 55555 6 0 6 99 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 8 5 11 5 5 77 888 88 666666 3 3 3 44 8888 1 3 0 4 555 4 4 4 4 4 4 55 3 3 3 00 0000000000 66 4 5 77 5 0 2 111 3 6 6 444 7
lowQualScore : . . ..... . . . .. .............................................................................................................. . . .. . . .. ... .. ...... . . . .. .... . . . . ... . . . . . . .. . . . .. .......... .. . . .. . . . ... . . . ... .
lowQualScore : 5 3 22222 7 7 7 22 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 0 99 0 0 88 888 22 999999 1 1 1 66 8888 2 6 4 0 555 0 0 0 0 0 0 55 6 6 6 44 4444444444 99 4 0 22 0 5 8 222 7 7 7 000 0
consensus : AATTCAGATCATAGTACATCACAN----CTACAGCA-AACACGCTTATAATG-AATTC--ACGCTT------A--------------AGTTA----CAGT-C-----AAC----ACGCNTATAATGA---AT-TC------AC------AGTGGA----C---T-TA------CAGCGA-A--CAC-ACTT-ATAACGA---AT-TCA---C--GCTTAC-AG-TAAAA-CACGGTT--ACA-G--CGAACA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
Reference ( family-1912 ) : AATTCAGATCATAGTACATCACAN----TTACAGCA-AACACGCTTATAATG-AATTC--ACGCTT------A--------------AGTTA----CAGT-C-----AAC----ACGCNTATAATGA---AT-TC------AC------AGTGGA----C---T-TA------CAGCGA-A--CAC-ACTT-ATAACGA---AT-TCA---C--GCTTAC-AG-TAAAA-CACGGTT--ACA-G--CGAACA-CGCTTATA-A-T-GA-A-T-T-C-A-CGC--TT-AC-A-GT-GAAA----C--GCNG--TTACA-GCAAAC-AC-GCTT-ATAACGAANTCG--ACGCT-TAT-AGC---GAAGTGATTTTCATTC
gi|1 : AATTCAGA-CATAGTACATCACAG----CTACAGCA-AACACACTAATAATG-AATTTTAACACTT------GACAAGGTAAACCACAGTTA----CGGTGA-----AAC----ACACGT-TAATGA---ATGTC------AC------ACTACA----T---C-TAACGCTTCAGCAA-A--CAC-ACTT-ATAAAAA---AT-TCA---C--ACTTAC-AG-TAAAA-CACAGTT--ACA-G--TGAACA--ACTTATA-T-A-GA-A-T-T-C-A-CAC--TT-AC-A-GT-AAAA----C--GCTG--TTA-A-GCAAA--AC-ACTTAATAA-GAATTCG--ACGCA-TAC-AGC---GAAGTGACTTTTATTC
gi|10 : C-AG-TAAAAGCACAGTT--ACATG--TGAACA-CG--TATA-AAC-GA-A-T-TTC-A-TGC--TT-AC-A-GT-GAAG----C--G-AG--TTTCA-
gi|11 : TAC-AG-TAAAA-CACGCTT--ATA-G--Cttctttgctgttctgtagtatattgaactcaatggacataac
gi|12 : taataaaatcatataacaaacatttcgtgtataacaagctacgtttatatccaaaatattcgtccctagaAC-AG-TAGAA-CACAGCT--ACA-G--GGGACC-TGTTTACA-A-T-GA-A-AAC-C-A-TGC--TT-AC-A-GT-GAAG----C--G
gi|13 : TAC-AG-TAAAA-TACAACT--ACA-G--CAAATA-CTGTTACA-A-G-GA-A-T-T-C-A-AAT--TT-AC-A-GT-GAattctcattcccactg
gi|16 : gtaca--ACA-G--CTAACA-TGCTTATA-A-T-GA-A-T-T-C-A-CAC--TT-AC-A-Gggtaatc
gi|2 : AATTTAGATCAT----CATCTCAACTTTTTA-AGCA-AACACACTTCTAATGAAATTC--ACCCTT------ACAGTGAAACATC--AGTTA----CAGC-C-----AAC----ACGCTTAT-ATGAT--AT-TCACACTTAC------AGTGAAAACGC---TCTA------CAGCCATA--CAC-ACTT-ATAATAG---A--TCAAATC--ACTTAC-AG-TGAAA--ACGGTT--ACACG--CCAACA-CGCTTA-A-A-T-GA-A-G-T-C-A-CATCGTT-ACAA-GT-TAAAAAACC--ACAG--TTACA-GCCAACAACGGCTT-ATAATGAAATC
gi|3 : ---T-TA------CAGTAA-AGACAC-ACTT-ATAA-GA---A--TCA---CAAACCTACAAG-TAAAA-CACAGTT--ATA-----GAATA-TGCGTATA-A-T-GA-A-T-T-C-A-CAC--TT-AC-AGGT-AAAA----C--AACA--TTATA-GTGAAC-AT-GCTT-ATAACAAAGTC---ATGCT-TTTGAGC---AAAGTGA-TTCCATTCac
gi|4 : ttactacattaaCAA----CTACAGTC-AACGCATCTATAATG-AATTC--ATGC-------------------------TTA----CAGT-C-----AAC----ACATCTATAGTGA---AT-TC------A---------TG------C---T-TA------CAGTCA-A--CAC-ATCT-ATAATGAAACATGTCA---C--GCgcttttgtgtaaactcttagatatcaaacattcaaattgtcctccagcacttgctgaagcgttttttcctgt
gi|4 : gtaaaactTCATGC----TTACAGTC-AACACATCTATAGTG-AATTC--ATGC-------------------------TTA----CAGT-C-----AAC----ACATCTATAATGAAACATGTC------ACGCACTTAATGGA----------TA------TAAC-A-A--CA---------AACGA---AT-T-G---T--GTTTAC-AT-TAAAT-CAacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|4 : gtaaaactcaactacagtcaacgcatctataatgaatTAC-AG-TAAAA-CACGCTT--ATA-G--CGGGCG-Ctcaaaattgtccgtctccagcgcccgctataagcgtgttttactgta
gi|5 : gtaaaactcaactacagtcaacgcatctataatgaattcatgcttacagtcaacacatctatagtgaattcatgcttacagtcaacacatctataatgaaacatgtcacgcacttaatggatataacaacaaacgaattgtgtttacattaaatcatcaaaattgtccgtctccaTAC-AGCTAAAA-CACGGTTTAACA-AACCAAACACCACTT-TATA-T-GA-A-T-T-C-ATTGC--TT-AC-A-GT--AAA----C--ACGG--TTACA-CCAAAC-AC-ACTT-ACAA-----TCG--ACGTTCTAT-
gi|5 : tacatgtatgcaacaataCAA-A--CACCACTTTATA-TGA---AT-TCA---TT-GCTTAC-AG-TAAA--CACGGTT--ACA-C--CAAACA-CACTTACA-A-TCGACG-T-T-CTA-TGC---T-AC-T-GTAAAAA----CAAACGG--TTACA-CCAAAC-A--ACTT-ACAATGAGTTCgctactgtaaaaacaaacggttacaccaaacaacttacaatgagttc
gi|6 : tacatgtatgcaacaatatacagctaaaacacggtttaacaaacACATGCAAAC-TT-GCAT-ATAATGAACTC---ATGCT-TAC-TGCTGTAAAGTGATTTTCACTC
gi|7 : caatcagtcaaattacatagtgcg-AC-A-GT-AAAA----T--ACAG--CTACA-GCAAAC-AT-GCTT-ACGATGAATTCA--A-GAT-TAT-AGC---AAAGTGATCATCATTCtctgtactattaaaatacataaagaacttattggatatcttataatgaactacatttataataagtaaaaaattgt
gi|7 : aACAGTAAAATACAG----CTACAGCA-AACATGCTTACGATG-AATTC--AAGATTATAGCAA--------------AGTGATCATCATT-CACTGTAACTTTTAAACATATCCTGA---A---C------AT------AATGGA----TACAT-TA-------AACGA-AT-TAC-ATTC-ATATCGA---AT-CCA---actgtaacttttaaacatatcctgaacataatggatacattaaacgaattacattcatatcgaatccaaaaattgtt
gi|8 : aCACAC----TTACAGTAGAACACGCTTATAATT-AATTC--ACACTT------A--------------AAGTA----TAG----------C----ACGCTTATAATGA---AT-TC------AC------AG------------T-TA------TAGTGA-G--CAC-ATCT-ATAATGA---AT-TCA---C--AGTTAT-AG-T-GAA-CACaaaattgtt
gi|9 : atgaatcAC-AG-TGAAA-CTCAGTT--ACA-G--CTAACA-CGCTTATA-A-T-GA-ATT-T-C-A-CAC--TTAAC-A-GC-TGAA----C--ATCGGTTTACA-GCAGAC-AC-GCTT-ATAACAAGGCTAACACGCT-TAT-AAT---GAatctataa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): ATTGTTTACAACAAATCAAAATTGTTTGTCCCCAGCACCCCCAATAAGAGTGTTTTAC
Unaligned ( gi|15 ): GTTGACATTGATTGTTCGTCCCAACACCTGAGCTATGAGTGTGTGTTCCTGTAT