lowQualScore : 1 1 1 1 2222 1 2 4 1 11
lowQualScore : . . . . .... . . . . ..
lowQualScore : 4 4 3 3 7777 3 6 5 3 88
consensus : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
Reference ( gi|19 ) : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAGCCT-AG--ATAATGTAA
gi|15 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTA
gi|16 : aTTATTT-C-T-T-GAC----CC-ATGGCCTCAAA-TAACCT-AG--ATAATGTAA
gi|18 : TTATTT-C-T-T-GGC----CC-ATGACCTCAAA-TAGCCT-AG--ATACTGTAA
gi|17 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATACTGTAA
gi|13 : TTATTT-C-T-T-GAC----CC-ATGACCTCCAA-TAACCT-AG--ATAATGCAA
gi|21 : TTATTT-----T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
gi|7 : TTACTT-C-T-T-GAC----CT-ATGACCTCAAG-TAACCT-AA--ATAATGTAAa
gi|34 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--at
gi|30 : TTATTT-C-T-T-GAC----CT-ATGACCTCAAA-TAACCT-AG--AT
gi|29 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAT-TAACCT-AG--ATA
gi|24 : TTATTT-A-C-T-GAC----CC-ATGACCTCAAACTAACCT-AG--ATAATGT
gi|23 : TTATTT-A-C-T-GAC----CC-ATGACCTCAAACTAACCT-AG--ATAATGT
gi|11 : TTATTT-C-TCT-GAC----C--ATGACCTCAAA-TAACCT-AG--ATACTGTAA
gi|1 : TTATTT-C-T-TTGACACCACC-ATGACCT-AAA-TAGCCT-AG--ATAATGTAAa
gi|32 : TTATTT-C-T-T-GAC----CC-ATGACGTCAAA-TAACCT-AG--ATat
gi|31 : TTATTT-C-T-T-GAA----CC-ATGACCTCAAA-TAACCT-AG--AT
gi|28 : TTATCT-C-T-T-GAC----CT-ATGACCTCAGA-TAACCT-AG--ATA
gi|5 : TTATTT-C-T-T-GAC----TT-ATTACCTCACA-TAACCT-AG--ATTATGTAA
gi|20 : TTATTTTC-T-T-GAC----CC-ATGACCTCAAA-TAACAT-AG--A-AAAGTAAatc
gi|6 : TNATTT-C-T-T-GAC----CC-ATTACCTCAAA-TAACCT-AGTTATGACGTGA
gi|4 : aTTACTT-C-T-T-GGC----AT-ATGACCTC-AG-TAACTT-AG--ATAATGTAA
gi|3 : aTTATTT-CCT-T-GAC----CA-ATGACCTCACA-TAA-CT-AG--ATTATGTAAatc
gi|22 : tgaTACTT-C-T-T-GAC----CC-ATGATCTCAAG-TAACCT-AT--ATAATGTAAct
gi|27 : TATTT-C-T---GAC----CC-ATGAC-TCAAA-TAACCT-AG---TACTGTAA
gi|9 : ACTT-C-T-T-GAC----CC-TTGACCTCAAG-TAGCCT-AG--ATAATGTAA
gi|8 : ATTT-T-T-T-GAC----CC-ATGACCTCAAA-TAACCTAAG--ATAATGTAAatc
gi|14 : cATTT-G-T-T-GAC----CT-ATGACCTTAAA-TAACCT-AG--ATAGTGTAAgt
gi|10 : T-C-T-T-GAC----CT-ATGACCTCAAG-TAACCT-AG--ATAATGTAAat
gi|26 : taca-T-T-GAC----CC-ATGACCTCAAA-TCACCT-AG--ATCATGat
gi|12 : -T-GAC----CCTATGACCTCCAA-TAACCT-AA--ATAATGTAAgatatc
gi|33 : tatcC----CT-ATGACCTCAAG-TAACCT-AG--ATAATGTAAactc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TATTTCTTGACTTAGTGTACATTTCCTACACCTAGATTACTGTAAATC
Unaligned ( gi|25 ): CTTCTTGACCTACATTATAGTAACGTAAATAATGTAAATC
Alignments
lowQualScore : 1 1 1 1 2222 1 2 1 11
lowQualScore : . . . . .... . . . ..
lowQualScore : 4 3 3 3 7777 2 5 2 77
consensus : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
Reference ( family-191 ) : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
gi|1 : TTATTT-C-T-TTGACACCACC-ATGACCT-AAA-TAGCCT-AG--ATAATGTAA
gi|10 : T-C-T-T-GAC----CT-ATGACCTCAAG-TAACCT-AG--ATAATGTAAat
gi|11 : tacaTTATTT-C-TCT-GAC----C--ATGACCTCAAA-TAACCT-AG--ATACTGTAAat
gi|12 : -T-GAC----CCTATGACCTCCAA-TAACCT-AA--ATAATGTAAa
gi|13 : tatcTTATTT-C-T-T-GAC----CC-ATGACCTCCAA-TAACCT-AG--ATAATGCAAactc
gi|14 : ATTT-G-T-T-GAC----CT-ATGACCTTAAA-TAACCT-AG--ATAGTGTAA
gi|15 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAat
gi|16 : aTTATTT-C-T-T-GAC----CC-ATGGCCTCAAA-TAACCT-AG--ATAATGTAA
gi|17 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATACTGTAA
gi|18 : TTATTT-C-T-T-GGC----CC-ATGACCTCAAA-TAGCCT-AG--ATACTGTAA
gi|19 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAGCCT-AG--ATAATGTAA
gi|20 : TTATTTTC-T-T-GAC----CC-ATGACCTCAAA-TAACAT-AG--A-AAAGTAA
gi|21 : TTATTT-----T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
gi|22 : TACTT-C-T-T-GAC----CC-ATGATCTCAAG-TAACCT-AT--ATAATGTAAa
gi|23 : TTATTT-A-C-T-GAC----CC-ATGACCTCAAACTAACCT-AG--ATAATGT
gi|24 : TTATTT-A-C-T-GAC----CC-ATGACCTCAAACTAACCT-AG--ATAATGT
gi|26 : -T-T-GAC----CC-ATGACCTCAAA-TCACCT-AG--ATCATG
gi|27 : TATTT-C-T---GAC----CC-ATGAC-TCAAA-TAACCT-AG---TACTGTAAgatatc
gi|28 : TTATCT-C-T-T-GAC----CT-ATGACCTCAGA-TAACCT-AG--ATA
gi|29 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAT-TAACCT-AG--ATA
gi|3 : TTATTT-CCT-T-GAC----CA-ATGACCTCACA-TAA-CT-AG--ATTATGTAA
gi|30 : tgaTTATTT-C-T-T-GAC----CT-ATGACCTCAAA-TAACCT-AG--ATct
gi|31 : TTATTT-C-T-T-GAA----CC-ATGACCTCAAA-TAACCT-AG--AT
gi|32 : TTATTT-C-T-T-GAC----CC-ATGACGTCAAA-TAACCT-AG--AT
gi|33 : C----CT-ATGACCTCAAG-TAACCT-AG--ATAATGTAA
gi|34 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--atc
gi|4 : TTACTT-C-T-T-GGC----AT-ATGACCTC-AG-TAACTT-AG--ATAATGTAA
gi|5 : aTTATTT-C-T-T-GAC----TT-ATTACCTCACA-TAACCT-AG--ATTATGTAAatc
gi|6 : TNATTT-C-T-T-GAC----CC-ATTACCTCAAA-TAACCT-AGTTATGACGTGAatc
gi|7 : aTTACTT-C-T-T-GAC----CT-ATGACCTCAAG-TAACCT-AA--ATAATGTAA
gi|8 : ATTT-T-T-T-GAC----CC-ATGACCTCAAA-TAACCTAAG--ATAATGTAAat
gi|9 : cACTT-C-T-T-GAC----CC-TTGACCTCAAG-TAGCCT-AG--ATAATGTAAgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TATTTCTTGACTTAGTGTACATTTCCTACACCTAGATTACTGTAAATC
Unaligned ( gi|25 ): CTTCTTGACCTACATTATAGTAACGTAAATAATGTAAATC
Alignments
lowQualScore : 1 1 1 1 2222 1 2 1 11
lowQualScore : . . . . .... . . . ..
lowQualScore : 4 3 3 3 7777 2 5 2 77
consensus : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
Reference ( family-191 ) : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
gi|1 : TTATTT-C-T-TTGACACCACC-ATGACCT-AAA-TAGCCT-AG--ATAATGTAA
gi|10 : T-C-T-T-GAC----CT-ATGACCTCAAG-TAACCT-AG--ATAATGTAAat
gi|11 : tacaTTATTT-C-TCT-GAC----C--ATGACCTCAAA-TAACCT-AG--ATACTGTAAat
gi|12 : -T-GAC----CCTATGACCTCCAA-TAACCT-AA--ATAATGTAAa
gi|13 : tatcTTATTT-C-T-T-GAC----CC-ATGACCTCCAA-TAACCT-AG--ATAATGCAAactc
gi|14 : ATTT-G-T-T-GAC----CT-ATGACCTTAAA-TAACCT-AG--ATAGTGTAA
gi|15 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAat
gi|16 : aTTATTT-C-T-T-GAC----CC-ATGGCCTCAAA-TAACCT-AG--ATAATGTAA
gi|17 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATACTGTAA
gi|18 : TTATTT-C-T-T-GGC----CC-ATGACCTCAAA-TAGCCT-AG--ATACTGTAA
gi|19 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAGCCT-AG--ATAATGTAA
gi|20 : TTATTTTC-T-T-GAC----CC-ATGACCTCAAA-TAACAT-AG--A-AAAGTAA
gi|21 : TTATTT-----T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
gi|22 : TACTT-C-T-T-GAC----CC-ATGATCTCAAG-TAACCT-AT--ATAATGTAAa
gi|23 : TTATTT-A-C-T-GAC----CC-ATGACCTCAAACTAACCT-AG--ATAATGT
gi|24 : TTATTT-A-C-T-GAC----CC-ATGACCTCAAACTAACCT-AG--ATAATGT
gi|26 : -T-T-GAC----CC-ATGACCTCAAA-TCACCT-AG--ATCATG
gi|27 : TATTT-C-T---GAC----CC-ATGAC-TCAAA-TAACCT-AG---TACTGTAAgatatc
gi|28 : TTATCT-C-T-T-GAC----CT-ATGACCTCAGA-TAACCT-AG--ATA
gi|29 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAT-TAACCT-AG--ATA
gi|3 : TTATTT-CCT-T-GAC----CA-ATGACCTCACA-TAA-CT-AG--ATTATGTAA
gi|30 : tgaTTATTT-C-T-T-GAC----CT-ATGACCTCAAA-TAACCT-AG--ATct
gi|31 : TTATTT-C-T-T-GAA----CC-ATGACCTCAAA-TAACCT-AG--AT
gi|32 : TTATTT-C-T-T-GAC----CC-ATGACGTCAAA-TAACCT-AG--AT
gi|33 : C----CT-ATGACCTCAAG-TAACCT-AG--ATAATGTAA
gi|34 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--atc
gi|4 : TTACTT-C-T-T-GGC----AT-ATGACCTC-AG-TAACTT-AG--ATAATGTAA
gi|5 : aTTATTT-C-T-T-GAC----TT-ATTACCTCACA-TAACCT-AG--ATTATGTAAatc
gi|6 : TNATTT-C-T-T-GAC----CC-ATTACCTCAAA-TAACCT-AGTTATGACGTGAatc
gi|7 : aTTACTT-C-T-T-GAC----CT-ATGACCTCAAG-TAACCT-AA--ATAATGTAA
gi|8 : ATTT-T-T-T-GAC----CC-ATGACCTCAAA-TAACCTAAG--ATAATGTAAat
gi|9 : cACTT-C-T-T-GAC----CC-TTGACCTCAAG-TAGCCT-AG--ATAATGTAAgt
blockSeqs : T C C . . T C A TT
blockSeqs : . . . . . . C . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ****
originalCons : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
finalCons : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TATTTCTTGACTTAGTGTACATTTCCTACACCTAGATTACTGTAAATC
Unaligned ( gi|25 ): CTTCTTGACCTACATTATAGTAACGTAAATAATGTAAATC
Alignments
lowQualScore : 1 1 1 1 2222 1 2 1 11
lowQualScore : . . . . .... . . . ..
lowQualScore : 4 3 3 3 7777 2 5 2 77
consensus : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
Reference ( family-191 ) : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
gi|1 : TTATTT-C-T-TTGACACCACC-ATGACCT-AAA-TAGCCT-AG--ATAATGTAA
gi|10 : T-C-T-T-GAC----CT-ATGACCTCAAG-TAACCT-AG--ATAATGTAAat
gi|11 : tacaTTATTT-C-TCT-GAC----C--ATGACCTCAAA-TAACCT-AG--ATACTGTAAat
gi|12 : -T-GAC----CCTATGACCTCCAA-TAACCT-AA--ATAATGTAAa
gi|13 : tatcTTATTT-C-T-T-GAC----CC-ATGACCTCCAA-TAACCT-AG--ATAATGCAAactc
gi|14 : ATTT-G-T-T-GAC----CT-ATGACCTTAAA-TAACCT-AG--ATAGTGTAA
gi|15 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAat
gi|16 : aTTATTT-C-T-T-GAC----CC-ATGGCCTCAAA-TAACCT-AG--ATAATGTAA
gi|17 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATACTGTAA
gi|18 : TTATTT-C-T-T-GGC----CC-ATGACCTCAAA-TAGCCT-AG--ATACTGTAA
gi|19 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAGCCT-AG--ATAATGTAA
gi|20 : TTATTTTC-T-T-GAC----CC-ATGACCTCAAA-TAACAT-AG--A-AAAGTAA
gi|21 : TTATTT-----T-GAC----CC-ATGACCTCAAA-TAACCT-AG--ATAATGTAA
gi|22 : TACTT-C-T-T-GAC----CC-ATGATCTCAAG-TAACCT-AT--ATAATGTAAa
gi|23 : TTATTT-A-C-T-GAC----CC-ATGACCTCAAACTAACCT-AG--ATAATGT
gi|24 : TTATTT-A-C-T-GAC----CC-ATGACCTCAAACTAACCT-AG--ATAATGT
gi|26 : -T-T-GAC----CC-ATGACCTCAAA-TCACCT-AG--ATCATG
gi|27 : TATTT-C-T---GAC----CC-ATGAC-TCAAA-TAACCT-AG---TACTGTAAgatatc
gi|28 : TTATCT-C-T-T-GAC----CT-ATGACCTCAGA-TAACCT-AG--ATA
gi|29 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAT-TAACCT-AG--ATA
gi|3 : TTATTT-CCT-T-GAC----CA-ATGACCTCACA-TAA-CT-AG--ATTATGTAA
gi|30 : tgaTTATTT-C-T-T-GAC----CT-ATGACCTCAAA-TAACCT-AG--ATct
gi|31 : TTATTT-C-T-T-GAA----CC-ATGACCTCAAA-TAACCT-AG--AT
gi|32 : TTATTT-C-T-T-GAC----CC-ATGACGTCAAA-TAACCT-AG--AT
gi|33 : C----CT-ATGACCTCAAG-TAACCT-AG--ATAATGTAA
gi|34 : TTATTT-C-T-T-GAC----CC-ATGACCTCAAA-TAACCT-AG--atc
gi|4 : TTACTT-C-T-T-GGC----AT-ATGACCTC-AG-TAACTT-AG--ATAATGTAA
gi|5 : aTTATTT-C-T-T-GAC----TT-ATTACCTCACA-TAACCT-AG--ATTATGTAAatc
gi|6 : TNATTT-C-T-T-GAC----CC-ATTACCTCAAA-TAACCT-AGTTATGACGTGAatc
gi|7 : aTTACTT-C-T-T-GAC----CT-ATGACCTCAAG-TAACCT-AA--ATAATGTAA
gi|8 : ATTT-T-T-T-GAC----CC-ATGACCTCAAA-TAACCTAAG--ATAATGTAAat
gi|9 : cACTT-C-T-T-GAC----CC-TTGACCTCAAG-TAGCCT-AG--ATAATGTAAgt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TATTTCTTGACTTAGTGTACATTTCCTACACCTAGATTACTGTAAATC
Unaligned ( gi|25 ): CTTCTTGACCTACATTATAGTAACGTAAATAATGTAAATC