lowQualScore : 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 55555555555555555 111 1 1 222222222222222222222222222222222222222222222222222222 1 22222 11111 2222 1111 1111 999999999999999999999999999999 11111 1111 2222 66666666666666666666666 3333333333 111
lowQualScore : 1 6 88 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 0 2 0 99999999999999999 3 777 0 0 0 111111111111111111111111111111111111111111111111111111 0 9 0 8 0 3 3 00000 5 44444 1111 6 4444 0 1111 1 666666666666666666666666666666 1 33333 2222 0 5555 22222222222222222222222 1 9 1 1 8888888888 7 4 888 6 6
lowQualScore : . . .. .............................................................................................................................................................................................................................................................................................................................................................................................................................. . . . . ................. . ... . . . ...................................................... . . . . . . . ..... . ..... .... . .... . .... . .............................. . ..... .... . .... ....................... . . . . .......... . . ... . .
lowQualScore : 0 7 33 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 2 8 2 00000000000000000 2 888 0 2 0 555555555555555555555555555555555555555555555555555555 8 0 8 0 6 5 2 00000 7 33333 3333 7 2222 7 2222 0 222222222222222222222222222222 4 00000 0000 3 2222 00000000000000000000000 4 6 0 0 9999999999 7 2 777 7 0
consensus : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---C-TTAT-------TT------CTA--CC--------NATAT-CA--TA-AT-T----TCCAGGATCCCATA-AT-ATT-CACGGTATCNATTTA---T-GATGTGGCATN-TG-GAGCAATTAA-CGTTGAANGAGCGAANAGGGGAGG--GGCGN--GGNTTCAAG--TGGG--CCTA-G--GAGAGC-------AAATTA-CG-----AG-ATATAATGAA--G-A-TA-ATAG---ATG-ACATAATGAG-ATTAAT-A-GGT----AAAAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TTATCCT---------TA---------TNTA----------T---TTGTCATAA-AGTGGAGACCGC-GTGTGTATTCTCGCACCTAAAATTGTCATTTATCA----------TA---TAAATATAAACGGTTTAAG-GCAAA-ATANA--TTNGT--AAT----T----AG-----ATATC---GGTA------------GTTTGTTGACTTTGAAAAAT-GCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--T-AAACT----ATTT-C--CGTAAA---------A--------------TTAAC-AAGCG--A--TAAANCT-AAAAAGCTANN-AAAATCAAGC---TCATTT-----------GAGTGTTTATTACCACAGCAAAATTNTACNGAA-AAACNTTGATCN-CGA-TTGACGCGCGGGCGCGCCGAATACAACT
Reference ( gi|2 ) : AATCCATTCCCATATATTACAGA-TACTGGACAA-TT-AT-TGG---C-TTAT-------TT------CTA--CC--------TATAT-TA--TA-ATTT----TCCAGGATCCCATACATGATT-CACAGTATCGATTTA--ATCGGTGTGGTATT-TG-GAGCAATTAAATGTTAAATGAGCGAAAAAAAAAGGGGGGGGG--GGGTTTAAG--TGGT--TTTATGG-GAGAGT---A---AAATTAAGGA----AG-ATATAATAAA--GGAATAAATAAA--AGGAACAAAATAAG-ATTGATTA-AGTGCAAAAAAATCTGACGGCCGATT----GATCGATATAAGACACT-------------GGC------TCATCCT---------TA---------TGTA----------T---TTGTCATAA--------------GTATGTATTCTCGCACCAAAAATTGTCATTTATCA----------TA---TCAATATAAACGCTTTAAG-GCAAA-ATATAG-TTCGT--AAT----T----AG-----ATATA---GGTA------------GTTTGTTGACTTTGAAAAAT-GATGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGTG--T-AAACT----ACTT-C--TGTAAA---------A--------------TTAGC-AAGCG--A--TAAACCT-AAAAAGCTGAT-AAAATCAAGC---TC---T-----------GAATGTTTATTACCACGGCAAAATCATATTTAA-AAACTTTGATCC-TGA-TTGACGCGCAGGCGCGCTGAATACAACT
gi|1 : AATACATTCCCATATATTGCAGAGTACTGGACA--TT--T-TAT---C-T-AT-------TT------CTAGATC--------AATGT-AA---A-AT-------CCAGGATCC-----AT-ATT-CACGGTATCAATTTA---TTGATGTGGCATT-TG-GAGCAATTAAATGTTGAAGGAGCGAAAA------------GG--GGTTTCAAG--TGGG--CCT-TGGCGAGAGC---T---AAGTT---------AG-ATATATTGAA--GGA--AAATAGC--ATGAACATTTTGAGTATAAATCACAGTGC--ATAATTCTG--GG-CGATTTCAAGATCGATATAAGACACT-------------GACT-----TCATCCTATACATGTATA---------TATA----------T---TTGTCATAG--------------GTATGTATTCTCGCACT-AAAATTGTCATTTATCA----------TATATTAAATATAAA--CTTTAAG-GGAAA-ATA------------------T----AG-----ATATC---GGTA------------G-TTG-TGAC--TGAAAAAT-GCTGAGCCTCAAACTTT-----TG-ATTGCACTGGGCTCGATGTTTGCGT-T-AAAC-----ACTT-C--TGTAAA---------A--------------TAAGCAAAGCG--A--TAAACCT-AAGAAGCTGCT-AAAATCAAGC---TC---CATCTGATTACAGAAT-TTTATTACTACTGCAAATTAATATTT-A-AAACTTTGATCA-TG--TTGACGCGCA-CCGCACCAAATGCAACT
gi|9 : gctcgatttaattcgagaacgaactgtaatccaatgcttaacatttttaAATCCATTCCCATATCTTACAGA-TACTGGA-AA-TT--T-TAT---C-TTAT-------TT------CAA--CA--------GATGT-----CC-ATTA----TCCAGGATCCCAT-----ATT-CGTGGCATCCAT--------------GCATA-TG-GAGCGATTAAgcc
gi|3 : ccggtgtcggatttaatcgagaacgaactgtaattcaatgcttaatttcaatatttgAATCTATTGTCATATAGTGCAGA-TACTGCCCAG-TTCATCTGAAATT-TTAT-------CT------C-A--CC--------C---------------T----TCCA------TATA-ATGTAC-CA-AGTACC-AGCTA--G--GGTCTTATA----G-GAGTA--TAA-CATTGAAAGAGCGAATGGGAGAGGAGGGCGTCTGGCTTCAAG--TGGG--CCTAGGC-GAAAGTTTTATTCAAATTAACAATCTGAGTATACAAT---------TACGTA---------CACAATAA---TTGAT----------AAAAGTTTGACGGTTGATT-----AT---TATAAGACACTAGGAAAGGATTCGGGT------TTAGCCT---------TA---------TTTAGCATATATTTT---TTGAAATAAAAGTGGAGACCACTGTGTGTATCCTCGCATCTAAACACGTGATTTATTAGGGAAAAAAATA---CCAA-ACAAACAGTTAAAGAGTAAATATATATCTTTATCAAATATGAT----AGCCAAAATATACAAAGTAACATTGTATGGAGTTTGATGACTTTGAAAAATTGCTGATCCTCGAACTTTAATTCTG-AT-----TGGACTCGATATTTGTGGTT-CAGTT----ATTT-C--CGTTTA-------------------------TAAA-AAACG--AATCAAA--T-AAAAAACT
gi|5 : gtgatttaacacgggtttattctaacgaactgcacgtcaatgtataatAATCCATTCCCATGTATTGAAAA-TATTGGCCAGTTT-AT---A---C-GAAA-------TT------TTA--TCA-------CATAT-CAAGTACATGTACCATGCAGGATCCTATA-GTTATA-CAAGGTTTCGATTT------GATGTGGGACTATGTGAG-AATTAAa
gi|7 : tcactgatacagagatttttacaaatacgttacagtaatgtttgaatttttacaaaacataaatgaaacaaatgatcagaaaaaaggtggggtgaggattgcatgctccaaggcctggagttaaactcgaatctattcgagaacgaactataagtcaatgtataacaatttaATGCATTTTCATAAAGTGCAGA-TATTGGTCAG-TT----TGT---C-TGAT-------TTTTTATCCCA--CCCTTCCCGATATAT-CA---A-GTAT------CAGGGTCCC--------TTGCACAGTTTCTATTTAATATCGTTATGGTATG-TG-GAGTAA---------AGATGA-CAAGGAAGGAAGGTCGGTGA--GAG-TTAAGGATGATACTTTA----AAG-----------AATTATTG---------CATAAAAAACTGCAGT--ATTAACCATGTACATAAT--G-ATTAATAA-GAT---AAAAAGTC-----------T----GATTAATATAAGACACT-------------GGtaaacatgtatatcgaagga
gi|10 : ATTCCCATGTATTACAGA-TTCTGGCTAGTTT-ATCTGA---CATTATCACATAGTT------CTA--CA--------TACATGTA--TA-aaaag
gi|4 : T----GATCAATATTAAATACT-------------GGCGAGGGACTATATT---------TAGCATATACATGTA----------TCAGTTGTCATAATAGTGGAGATCGTGGTGTGTATTCTTGTAACTAAAATTGTCATTTATAA----------TA-----AATATAAACTGTTTACG-GCAAA-ATACTG-TAAGA--GAT----TTACAAC-----GCATC---AGTA------------GTTTGCTGTCTTTGAAAAGT-GTTGTGTTTTAA-TTTT-----TA-AT-----TGGGCTTGATATTTGAG--T-AAATT----ATTTCC--TTTAAAGAAAAAAACA--------------ACAAC-AATCG--A--TAAAGCT-AAAAGGTTACG-AAAATCAAGCTCATC---T-----------GAATGTTTATTTCTACAGCAAAATTCTACGGAATATACTTTGACAA-CGA-CTGACGTCCGGGTGCGCCGAATACAATTtcaagcaccagtgtcctatatacactgatgagcgaaaggggggagggggtctggcttctaatgccttacagttcgttctcaattaaatccgag
gi|12 : aacaatttgagtcagtataaaattgatacaatttttacgtcTCGCACTTAAAATTGTCATTTATCA----------TA---TAACTATAAACGGTTTAAG-GCAAA-CTAGA---TCGT--AAT----T----AG-----ATATC---GGTA------------GTTTGTTGACTTTGAAAAAT-GCTGAGCTTCAAACTTT-----TG-AT-----TGGGCTCGACATTCGCC--TCAGACTGCTAACTT-T--TGTa
gi|8 : gtaA------------GTTTGTTGACTCAGAAAAAG-GATG-----------TT-----TGTAT-----T-----CGGTATTCGAT--T-AACCT----ATTT-T--CGTAAA---------AACAAAAATAAAACTTTAAA-ACACGTCA--TAAATCT-AAGTTGTTTATGAAAATCA-GT---TCATTT-----------AAGTGTTTATGACCACAGCAAAACTATACAAGA-AAACAATGACCCACGATTTGACGCGCGGGCTCGACGACTCCAACT
gi|17 : TGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGA
gi|13 : aaaatctgacggcTTTA----TG-AT-----CGGGCTCGATATTCGCG--T-AAGCT----GTAT-CCTTGAACA---------A----------------GGC-AAGCG--A--TAAAGTTGAGAAAGC---------TCA------TT---T-----------GAGTGTTAATTA---------------------------TTGA-CC-AGA-TTGACGCCCAGATGCGCCGAATAC
gi|14 : AAACC--AAACGGCTAAG-AAAATCAAGC---TCATTT-----------GAGTGTTTATTACCATAGCTGAATTCTACTGAA-AAACATTG-TCCACAA-TTGAAGCGCAGACGCGCCGAATAC
gi|15 : tcaca-AAACGTTGATCA-TGA-TTAACGCGCGGGCGCGCCGAATACAACT
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): GTGTGTTTAAAATTCCGATCAAATTCTAACGAACCTGCTTTATAATAATAAAAATCTATTCACAAAAAGTGCCAGGATACTGGCCACTTTCTCTGAATTTTAAAACAGCCTTCCAGAATATCAACTGACTGGATCTTATATGGGTATATGTAAGAATTTGAGTTTTTATGACAGTTTGGTGCAATTGGGCCAAATATATATATACATGTATTATACAGCAATAGTATTAAATTATGTAACCTTATGAAATCGATAAAAGTCTGCTGATT
Unaligned ( gi|11 ): ATGACTGATTACGAGATTTTTACTTTAGTATACGTACCAAGAATATAAATGTAAGTAAAATAAATGGGTCAGAAAAAAAATAAGAAAGTGGGCTGGGAATTGCGTAATCCCCAAGGCCTGAGGTTTACCTCGGATTTAATTGAGAACGAACTGTAAGGC
Unaligned ( gi|16 ): ATCAGAACAAATAAGATGGGGGTGGGATTTGCATGATAATTACATGTCTAAAGGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333333333 111111 11 22222 55555555555555 11 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11 44444444444444 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22222 111 22222 77777777777777777777777777777777777 1111 11111 1111 111 11111 11111 11 666666666666666666666666666666666666 1111 111111 11111
lowQualScore : 5 6 77 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 5 1 999999999999 0 0 5 1 5 333333 77 44 00000 1 33333333333333 1 8 00 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 00 22222222222222 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 3 3 22222 444 00000 8 8 8 99999999999999999999999999999999999 4444 66666 4444 111 1 6 1 1 77777 5 22222 1 55 777777777777777777777777777777777777 77 77 6 1111 6 999999 1 55 44444 3 5 55 5 4
lowQualScore : . . .. .................................................................................... . . . ............ . . . . . ...... .. .. ..... . .............. . . .. .................................................................................................. .. .............. ............................................................................................ . . . ..... ... ..... . . . ................................... .... ..... .... ... . . . . ..... . ..... . .. .................................... .. .. . .... . ...... . .. ..... . . .. . .
lowQualScore : 7 6 44 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 7 0 666666666666 7 4 7 0 7 111111 11 44 00000 0 88888888888888 0 0 22 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 00000000000000 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 2 2 66666 000 00000 2 0 0 66666666666666666666666666666666666 0000 77777 2222 777 7 7 7 4 55555 0 55555 7 88 000000000000000000000000000000000000 99 99 6 1111 7 222222 8 22 99999 0 7 00 7 0
consensus : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC-N--------ATATCA---A-A-TT-T-C----CAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG-TGG-GCCTN--GGCGAGAG-------C-AAATTA----GGATATAA---T--GAAGG-AT-AATAAC-ATG--A-CATA-ATGAG-ATTAA-T---AG-G-T----AAAA-GTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCATAA-A-GTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAG-GCAAA-ATATA--TTCGT--AA-----T----TAG-----A---TAT-C--GGTA-----GTTTG----TTGA---CTTTGAAAAA-TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
Reference ( family-1908 ) : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC-N--------ATATCA--TA-A-TT-T-C----CAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----T-GATGTGGCA-TNTG-GAGCAATT-AA-CGTTGAANGAGCG-----AANAGGGG--AGG--GGCGN--GGNTTCAAG-TGG-GCCTA--GG--AGAG-------C-AAATTACG--AGATATAA---T--GAAG--AT-AATAG--ATG--A-CATA-ATGAG-ATTAA-T---AG-G-T----AAAA-GTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TNTA----------T---TTGTCATAA-A-GTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAG-GCAAA-ATANA--TTNGT--AA-----T----TAG-----A---TAT-C--GGTA-----GTTTG----TTGA---CTTTGAAAAA-TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAAAAGCT-ANNAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTNTACNGAA-AAACNTTGA-TCNCGA-TTGACGCGCGGGCGCGCCGAATACAACT
gi|1 : AATACATTCCCATATATTGCAGAGTACTGGACA--TT--T-TAT---CT-ATTT------CTAGATC-A--------ATGTAA---A-A-T----C----CAGGATCC-----A-T-ATT-CACG-GTATCAATTTA----TTGATGTGGCA-TTTG-GAGCAATT-AAATGTTGAAGGAGCG-----AAAAGGGG----------------TTTCAAG-TGG-GCCTT--GGCGAGAG-------CTAAGTTA-----GATATAT---T--GAAGG-AA-AATAGC-ATG--AACATT-TTGAGTATAAA-TCACAGTG-C----ATAA-TTCTG--GG-CGATTTCAAGATCGATATAAGACACT-------------GAC------TTCATCCTATACATGTATA---------TATA----------T---TTGTCATAG---------------G-TATGTATTCTCGCAC-TAAAATTGTCATTTATCAT----ATATTAAAT-----ATAAAC--TTTAAG-GGAAA-ATA-----------------------TAG-----A---TAT-C--GGTA-----GTT-G----T-GA---CT--GAAAAA-TGCTGAGCCTCAAACTTT-----TG-ATTGCACTGGGCTCGATGTTTGCGT-TAAAC-ACTTCTGT--------AAAA--------------T--AAG--CAAAGCG--A--TAAACCTAAGAAGCT-GCTAAAATCAAGCTCCATCTGATTACAGAATTTTATTACTACTGCAAATTAATATTT-A-AAACTTTGA-TCATG--TTGACGCGC-ACCGCACCAAATGCAACT
gi|10 : gctcgatttaattcgagaacgaactgtaatccaatgcttaacatttttaATTCCCATGTATTACAGA-TTCTGGCTAG-TT------------TAT--------CTG--AC-A--------TTATCA--CATA-GT-T-C----TA------CATA---------CATGTATATCAAGC-A----C-CA-GTGTCC-TAT-------AT---A-CACTGA-TGAGCG-----AAAGGGGGGAGGG--GGTCT--GGCTTCTAA-TGgcc
gi|12 : TCGCACTTAAAATTGTCATTTATCAT----ATA---ACT-----ATAAACGGTTTAAG-GCAAA-CTAGA--T-CGT--AA-----T----TAG-----A---TAT-C--GGTA-----GTTTG----TTGA---CTTTGAAAAA-TGCTGAGCTTCAAACTTT-----TG-AT-----TGGGCTCGACATTCGCccttacagttcgttctcaattaaatccgag
gi|13 : gtaTTTA----TG-AT-----CGGGCTCGATATTCGCG--TAAGCTGTATCCTT--------GAA------------------CAAGGC-AAGCG--A--TAAAGTTGAGAA--------------AGCT-CATTTGAGTG------TTAATTA---------------------------TTGA-CCA-GA-TTGACGCCCAGATGCGCCGAATACctcagactgctaacttttgt
gi|14 : --A--CAAAACCAAACGGCT-AAGAAAATCAAGCT-CATTTGAGTG------TTTATTACCATAGCTGAATTCTACTGAA-AAACATTGT-CCACAA-TTGAAGCGCAGACGCGCCGAATAC
gi|15 : tc-AAACGTTGA-TCATGA-TTAACGCGCGGGCGCGCCGAATACAACT
gi|17 : GCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGAagccgctgcagatt
gi|2 : aaaatctgacgAATCCATTCCCATATATTACAGA-TACTGGACAA-TT-AT-TGG---CTTATTT------CTA--CC-T--------ATATTA--TA-ATTT-T-C----CAGGATCCCATACA-TGATT-CACA-GTATCGATTTAAT--C-GGTGTGGTA-TTTG-GAGCAATTAAA-TGTTAAATGAGCGAAAAAAAAAGGGG--GGG--GG-----GGGTTTAAG-TGG-TTTTATGGG--AGAG-------TAAAATTAAGGAAGATATAA---T--AAAGGAATAAATAA--AAGGAA-CAAA-ATAAG-ATTGATT---AA-G-TGCAAAAAA-ATCTGACGGCCGATT----GATCGATATAAGACACT-------------GGC------TC-ATCCT---------TA---------TGTA----------T---TTGTCATAA---------------G-TATGTATTCTCGCACCAAAAATTGTCATTTATCAT----ATC---AAT-----ATAAACGCTTTAAG-GCAAA-ATATAG-TTCGT--AA-----T----TAG-----A---TAT-A--GGTA-----GTTTG----TTGA---CTTTGAAAAA-TGATGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGTG--TAAACTACTTCTGT--------AAAA--------------T--TAG--C-AAGCG--A--TAAACCTAAAAAGCT-GATAAAATCAAGCT-C---TGAATG------TTTATTACCACGGCAAAATCATATTTAA-AAACTTTGA-TCCTGA-TTGACGCGCAGGCGCGCTGAATACAACT
gi|3 : AATCTATTGTCATATAGTGCAGA-TACTGCCCAG-TTCATCTGAAATTTTATCT------C-A--CC-C----------------------T-T-C----CA------TATA-A-T-GTA-CCAA-GTA-CCAGCTA----G-GGTCT--TA-TA-G-GAGTA--T-AA-CATTGAAAGAGCG-----AATGGGAG--AGGAGGGCGTCTGGCTTCAAG-TGG-GCCTA--GGCGAAAGTTTTATTC-AAATTA--------ACAA---TCTGAGT--AT-A-CA---ATT--A-CGTACACAA----TAA-T---TG-A-T----AAAA-GTTTG--A--CGGTT----GATTATTATAAGACACTAGGAAAGGATTCGGGT------TT-AGCCT---------TA---------TTTAGCATATATTTT---TTGAAATAA-AAGTGGAGACCACTG-TGTGTATCCTCGCATCTAAACACGTGATTTATTAGGGAAAAA---AATACCAAACAAACAGTTAAAGAGTAAATATATATCTTTATCAAA-----TATGATAGCCAAAA---TATACAAAGTAACATTGTATGGAGTTTGATGACTTTGAAAAATTGCTGATCCTCGAACTTTAATTCTG-AT-----TGGACTCGATATTTGTGGTTCAGTTATTTCCGT--------TTA------------------TAA--A-AAACG--AATCAAA--TAAAAAACT-A
gi|4 : gtgatttaacacgggtttattctaacgaactgcacgtcaatgtataatT----GATCAATATTAAATACT-------------GGCGAGGGACT-ATATT---------TAGCATATACATGTA----------TCAGTTGTCATAATA-GTGGAGATCGT-GGTGTGTATTCTTGTAACTAAAATTGTCATTTAT-A-----ATA---AAT-----ATAAACTGTTTACG-GCAAA-ATAC-----TGT--AAGAGATT----TAC-----AACGCAT-C--AGTA-----GTTTG----CTGT---CTTTGAAAAG-TGTTGTGTTTTAA-TTTT-----TA-AT-----TGGGCTTGATATTTGAG--TAAATTATTTCCTTTAAAGAAAAAAA--------------CAACAA--C-AATCG--A--TAAAGCTAAAAGGTT-ACGAAAATCAAGCT-CATCTGAATG------TTTATTTCTACAGCAAAATTCTACGGAATATACTTTGA-CAACGA-CTGACGTCCGGGTGCGCCGAATACAATT
gi|5 : aacaatttgagtcagtataaaattgatacaatttttacgtcAATCCATTCCCATGTATTGAAAA-TATTGGCCAGTTT-AT---A---CGAAATT------TTA--TCAC--------ATATCAAGTACA-TG-TACCATGCAGGATCCTATA-GTT-ATA-CAAG-GTTTCGATT------T-GATGTGGGACTATGTGAG-AATT-AA-a
gi|7 : tcactgatacagagatttttacaaatacgttacagtaatgtttgaatttttacaaaacataaatgaaacaaatgatcagaaaaaaggtggggtgaggattgcatgctccaaggcctggagttaaactcgaatctattcgagaacgaactataagtcaatgtataacaatttaATGCATTTTCATAAAGTGCAGA-TATTGGTCAG-TT----TGT---CTGATTTTTTATCCCA--CC-CTTCCCGATATATCA---A-G-TA-T-C-----AGGGTCCC---------TTGCACA-GTTTCTATTTAATATC-GTTATGGTA-TGTG-GAG----T-AA-AGATGA-----CA-----AGGAAGGA--AGGTCGGTGA--GAGTTAAGGATGATACTTT--AA--AGA------------ATTATT--GCATAAAAAACT--GCAG---T-ATTAACCATGT-A-CATA-ATGA---TTAA-T---AA-GAT----AAAAAGTCTG---------------ATTAATATAAGACACT-------------GGtaaacatgtatatcgaagga
gi|8 : A-----GTTTG----TTGA---CTCAGAAAAA-GGATG-----------TT-----TGTAT-----T-----CGGTATTCGAT--TAACCTATTTTCGT--------AAAAACAAAAATAAAACTT--TAA--A-ACACGTCA--TAAATCTAAGTTGTTTATGAAAATCA-GTT-CATTTAAGTG------TTTATGACCACAGCAAAACTATACAAGA-AAACAATGACCCACGATTTGACGCGCGGGCTCGACGACTCCAACTaaaag
gi|9 : AATCCATTCCCATATCTTACAGA-TACTGG-AAA-TT--T-TAT---CTTATTT------CAA--CA-G--------ATGTC----C-A-TTAT-C----CAGGATCCC----A-T-ATT-CGTG-GCATCCAT---------------GCA-TATG-GAGCGATT-AA-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGTGTTTAAAATTCCGATCAAATTCTAACGAACCTGCTTTATAATAATAAAAATCTATTCACAAAAAGTGCCAGGATACTGGCCACTTTCTCTGAATTTTAAAACAGCCTTCCAGAATATCAACTGACTGGATCTTATATGGGTATATGTAAGAATTTGAGTTTTTATGACAGTTTGGTGCAATTGGGCCAAATATATATATACATGTATTATACAGCAATAGTATTAAATTATGTAACCTTATGAAATCGATAAAAGTCTGCTGATT
Unaligned ( gi|11 ): ATGACTGATTACGAGATTTTTACTTTAGTATACGTACCAAGAATATAAATGTAAGTAAAATAAATGGGTCAGAAAAAAAATAAGAAAGTGGGCTGGGAATTGCGTAATCCCCAAGGCCTGAGGTTTACCTCGGATTTAATTGAGAACGAACTGTAAGGC
Unaligned ( gi|16 ): ATCAGAACAAATAAGATGGGGGTGGGATTTGCATGATAATTACATGTCTAAAGGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333333 111111 22222 55555555555555 11 11 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22222 111 22222 444444444444444 111 5555555555555555555 111 22222222 11111 11111 11 666666666666666666666666666666666666 1111 111111 11111
lowQualScore : 5 6 77 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 5 1 2222222222222 0 0 5 0 5 333333 77 555 00000 22222222222222 1 3 11 00 99 2 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 2222222 0 7777 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 3 3 22222 444 00000 8 333333333333333 444 5 1111111111111111111 222 1 44444444 99 1 1 77777 5 22222 1 55 777777777777777777777777777777777777 77 77 6 2222 6 999999 1 33333 3 5 4 5 4
lowQualScore : . . .. .................................................................................... . . . ............. . . . . . ...... .. ... ..... .............. . . .. .. .. . ..................................................................................... . ....... . .... ............................................................................................ . . . ..... ... ..... . ............... ... . ................... ... . ........ .. . . ..... . ..... . .. .................................... .. .. . .... . ...... . ..... . . . . .
lowQualScore : 7 6 44 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 0 7777777777777 7 4 7 6 7 111111 11 444 00000 66666666666666 0 2 00 22 88 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2 2222222 8 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 2 2 66666 000 00000 2 666666666666666 000 0 7777777777777777777 555 7 22222222 22 7 4 55555 0 55555 7 88 000000000000000000000000000000000000 99 99 6 1111 7 222222 8 00000 0 7 0 7 0
consensus : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT----A--G-ATATAA---TGAAGN-ATA-AATAA-CATG-A-CATAATGAG-ATTAA-T---AG-GTG---AAAAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATA-T-TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
Reference ( family-1908 ) : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT----A--GGATATAA---TGAAGG-AT--AATAA-CATG-A-CATAATGAG-ATTAA-T---AG-GT----AAAAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATA-T-TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
gi|1 : AATACATTCCCATATATTGCAGAGTACTGGACA--TT--T-TAT---CT-ATTT------CTAGATC--------AATGTAA-AA-T-----------CCAGGATCC-----A-T-ATT-CACG-GTATCAATTTA----TTGATGTGGCA-TTTG-GAGCAATT-AAATGTTGAAGGAGCG-----AAAAGGGG----------------TTTCAAG--TGG-GCCTTGGCGAGAG-------CTAAGTT----A--G-ATATAT---TGAAGG-AA--AATAG-CATG-AACATTTTGAGTATAAA-TCACAGTGC----ATAATTCTG--GG-CGATTTCAAGATCGATATAAGACACT-------------GAC------TTCATCCTATACATGTATA---------TATA----------T---TTGTCAT-AG--------------G-TATGTATTCTCGCAC-TAAAATTGTCATTTATCAT----ATATTAAAT-----ATAAAC--TTTAAGGGAAAATATA-----------------GA---TATCGGTAGT-------------------T-GT---GACT--GA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-ATTGCACTGGGCTCGATGTTTGCGT-TAAAC-ACTTCTGT--------AAAA--------------T--AAG--CAAAGCG--A--TAAACCTAAGAAGCT-GCTAAAATCAAGCTCCATCTGATTACAGAATTTTATTACTACTGCAAATTAATATTT-A-AAACTTTGA-TCATG--TTGACGCGC-ACCGCACCAAATGCAACT
gi|10 : gctcgatttaattcgagaacgaactgtaatccaatgcttaacatttttaATTCCCATGTATTACAGA-TTCTGGCTAG-T------------TTA--T------CTG--AC--------ATTATCA-CA-TAG-T------TCTA------CATA---------CATGTATATCAA-GCA----C-CA-GTGTCC-TAT-------AT---A-CACTG-ATGAGCG-----AAAGGGGGGAGGG--GGTCT--GGCTTCTAA--TGgcc
gi|12 : TCGCACTTAAAATTGTCATTTATCAT----ATA---ACT-----ATAAACGGTTTAAGGCAAACTAGA-T--CGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCTTCAAACTTT-----TG-AT-----TGGGCTCGACATTCGCccttacagttcgttctcaattaaatccgag
gi|13 : gtaTTTA----TG-AT-----CGGGCTCGATATTCGCG--TAAGCTGTATCCTT--------GAA------------------CAAGGC-AAGCG--A--TAAAGTTGAGAA--------------AGCT-CATTTGAGTG------TT--------------AATTA-------------TTGA-CCA-GA-TTGACGCCCAGATGCGCCGAATACctcagactgctaacttttgt
gi|14 : --A--CAAAACCAAACGGCT-AAGAAAATCAAGCT-CATTTGAGTG------TTTATTACCATAGCTGAATTCTACTGAA-AAACATTGT-CCACAA-TTGAAGCGCAGACGCGCCGAATAC
gi|15 : tc-AAACGTTGA-TCATGA-TTAACGCGCGGGCGCGCCGAATACAACT
gi|17 : GCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGAagccgctgcagatt
gi|2 : aaaatctgacgAATCCATTCCCATATATTACAGA-TACTGGACAA-TT-AT-TGG---CTTATTT------CTA--CC--------TATATTATAATT---T------TCCAGGATCCCATACA-TGATT-CACA-GTATCGATTTAAT--C-GGTGTGGTA-TTTG-GAGCAATTAAA-TGTTAAATGAGCGAAAAAAAAAGGGG--GGG--GG-----GGGTTTAAG--TGG-TTTTATGGGAGAG-------TAAAATTAAGGA--AGATATAA---TAAAGGAATA-AATAA-AAGGAA-CAAAATAAG-ATTGATT---AA-GTGCAAAAAAATCTGACGGCCGATT----GATCGATATAAGACACT-------------GGC------TC-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA--------------G-TATGTATTCTCGCACCAAAAATTGTCATTTATCAT----ATC---AAT-----ATAAACGCTTTAAGGCAAAATATAGT-TCGTAA-----TTAGA---TATAGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGATGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGTG--TAAACTACTTCTGT--------AAAA--------------T--TAG--C-AAGCG--A--TAAACCTAAAAAGCT-GATAAAATCAAGCT-C---TGAATG------TTTATTACCACGGCAAAATCATATTTAA-AAACTTTGA-TCCTGA-TTGACGCGCAGGCGCGCTGAATACAACT
gi|3 : AATCTATTGTCATATAGTGCAGA-TACTGCCCAG-TTCATCTGAAATTTTATCT------C-A--CC--------C--------------T------TCCA------TATA-A-T-GTA-CCAA-GTA-CCAGCTA----G-GGTCT--TA-TA-G-GAGTA--T-AA-CATTGAAAGAGCG-----AATGGGAG--AGGAGGGCGTCTGGCTTCAAG--TGG-GCCTAGGCGAAAGTTTTATTC-AAATT----A------ACAATC-TG-AGT-ATACAATTA-CGT--A-CACAA-------TAA-T---TG-AT----AAAAGTTT---GA-CGGTT----GATTATTATAAGACACTAGGAAAGGATTCGGGT------TT-AGCCT---------TA---------TTTAGCATATATTTT---TTGAAATAAA-AGTGGAGACCACTG-TGTGTATCCTCGCATCTAAACACGTGATTTATTAGGGAAAAA---AATACCAAACAAACAGTTAAAGAGTAAATATA-TATCTTTA-----TCAAA---TAT-GATAGCCAAAATATACAAAGTAACATTGTATGGAGTTTGATGACTTTGAAAAATTGCTGATCCTCGAACTTTAATTCTG-AT-----TGGACTCGATATTTGTGGTTCAGTTATTTCCGT--------TTA------------------TAA--A-AAACG--AATCAAA--TAAAAAACT-A
gi|4 : gtgatttaacacgggtttattctaacgaactgcacgtcaatgtataatT----GATCAATATTAAATACT-------------GGCGAGGGACT-ATATT---------TAGCATATACATGTA----------TCAGTTGTCAT-AATAGTGGAGATCGT-GGTGTGTATTCTTGTAACTAAAATTGTCATTTAT-A-----ATA---AAT-----ATAAACTGTTTACGGCAAAATAC-----TGTAAGAGATTTACAACGCATCAGTAGT-------------------TTGC-T-GTCTTTGA--------AAAG--TGTTGTGTTTTAA-TTTT-----TA-AT-----TGGGCTTGATATTTGAG--TAAATTATTTCCTTTAAAGAAAAAAA--------------CAACAA--C-AATCG--A--TAAAGCTAAAAGGTT-ACGAAAATCAAGCT-CATCTGAATG------TTTATTTCTACAGCAAAATTCTACGGAATATACTTTGA-CAACGA-CTGACGTCCGGGTGCGCCGAATACAATT
gi|5 : aacaatttgagtcagtataaaattgatacaatttttacgtcAATCCATTCCCATGTATTGAAAA-TATTGGCCAGTTT-AT---A---CGAAATT------TTA--TCA-------CATATCA-AG-TACATGTACCATGCAGGATCCTATA-GTT-ATA-CAAG-GTTTCGATTT-------GATGTGGGACTATGTGAG-AATT-AA-a
gi|7 : tcactgatacagagatttttacaaatacgttacagtaatgtttgaatttttacaaaacataaatgaaacaaatgatcagaaaaaaggtggggtgaggattgcatgctccaaggcctggagttaaactcgaatctattcgagaacgaactataagtcaatgtataacaatttaATGCATTTTCATAAAGTGCAGA-TATTGGTCAG-T---T-TGT---CTGATTTTTTATCCCA--CCCTTCCCGATATATCA-AG-T---A------T-CAGGGTCCC---------TTGCACA-GTTTCTATTTAATATC-GTTATGGTA-TGTG-GAG----T-AA-AGATGA-----CA-----AGGAAGGA--AGGTCGGTGA--GAGTT-AAGGATGATACTTT----AAAG----------AATT----ATTGCATAAAAAACTGCAGT-AT----TAACCATGTA-CATAAT--G-ATTAA-TA--AG-ATA---AAAAGTC-----------T----GATTAATATAAGACACT-------------GGtaaacatgtatatcgaagga
gi|8 : AGT-------------------TTGT-T-GACTCAGA--------AAAA--GGATG-----------TT-----TGTAT-----T-----CGGTATTCGAT--TAACCTATTTTCGT--------AAAAACAAAAATAAAACTT--TAA--A-ACACGTCA--TAAATCTAAGTTGTTTATGAAAATCA-GTT-CATTTAAGTG------TTTATGACCACAGCAAAACTATACAAGA-AAACAATGACCCACGATTTGACGCGCGGGCTCGACGACTCCAACTaaaag
gi|9 : AATCCATTCCCATATCTTACAGA-TACTGG-AAA-TT--T-TAT---CTTATTT------CAA--CA--------GATGTCC-AT-T---A------TCCAGGATCCC----A-T-ATT-CGTG-GCATCCAT---------------GCA-TATG-GAGCGATT-AA-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGTGTTTAAAATTCCGATCAAATTCTAACGAACCTGCTTTATAATAATAAAAATCTATTCACAAAAAGTGCCAGGATACTGGCCACTTTCTCTGAATTTTAAAACAGCCTTCCAGAATATCAACTGACTGGATCTTATATGGGTATATGTAAGAATTTGAGTTTTTATGACAGTTTGGTGCAATTGGGCCAAATATATATATACATGTATTATACAGCAATAGTATTAAATTATGTAACCTTATGAAATCGATAAAAGTCTGCTGATT
Unaligned ( gi|11 ): ATGACTGATTACGAGATTTTTACTTTAGTATACGTACCAAGAATATAAATGTAAGTAAAATAAATGGGTCAGAAAAAAAATAAGAAAGTGGGCTGGGAATTGCGTAATCCCCAAGGCCTGAGGTTTACCTCGGATTTAATTGAGAACGAACTGTAAGGC
Unaligned ( gi|16 ): ATCAGAACAAATAAGATGGGGGTGGGATTTGCATGATAATTACATGTCTAAAGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333333 111111 22222 55555555555555 11 11 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1 3333333 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22222 111 22222 444444444444444 111 5555555555555555555 111 22222222 11111 11111 11 666666666666666666666666666666666666 1111 111111 11111
lowQualScore : 5 6 77 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 5 1 2222222222222 0 0 5 0 5 333333 77 555 00000 22222222222222 1 3 11 00 99 2 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 0 2222222 0 7777 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 3 3 22222 444 00000 8 333333333333333 444 5 1111111111111111111 222 1 44444444 99 1 1 77777 5 22222 1 55 777777777777777777777777777777777777 77 77 6 2222 6 999999 1 33333 3 5 4 5 4
lowQualScore : . . .. .................................................................................... . . . ............. . . . . . ...... .. ... ..... .............. . . .. .. .. . .................................................................................... . . ....... . .... ............................................................................................ . . . ..... ... ..... . ............... ... . ................... ... . ........ .. . . ..... . ..... . .. .................................... .. .. . .... . ...... . ..... . . . . .
lowQualScore : 7 6 44 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 0 7777777777777 7 4 7 6 7 111111 11 444 00000 66666666666666 0 2 00 22 88 5 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 2 2222222 8 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 2 2 66666 000 00000 2 666666666666666 000 0 7777777777777777777 555 7 22222222 22 7 4 55555 0 55555 7 88 000000000000000000000000000000000000 99 99 6 1111 7 222222 8 00000 0 7 0 7 0
consensus : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTGA-T-A-AGTG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATA-T-TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
Reference ( family-1908 ) : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTAA-T-A-GGTG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATA-T-TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
gi|1 : AATACATTCCCATATATTGCAGAGTACTGGACA--TT--T-TAT---CT-ATTT------CTAGATC--------AATGTAA-AA-T-----------CCAGGATCC-----A-T-ATT-CACG-GTATCAATTTA----TTGATGTGGCA-TTTG-GAGCAATT-AAATGTTGAAGGAGCG-----AAAAGGGG----------------TTTCAAG--TGG-GCCTTGGCGAGAG-------CTAAGTT-----A--G-ATATAT---TGAA-GGA-A-AATAG-CATG-AACATTTTGAGTATAAA-TCACAGTG---CATAATTCTG--GG-CGATTTCAAGATCGATATAAGACACT-------------GAC------TTCATCCTATACATGTATA---------TATA----------T---TTGTCAT-AG--------------G-TATGTATTCTCGCAC-TAAAATTGTCATTTATCAT----ATATTAAAT-----ATAAAC--TTTAAGGGAAAATATA-----------------GA---TATCGGTAGT-------------------T-GT---GACT--GA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-ATTGCACTGGGCTCGATGTTTGCGT-TAAAC-ACTTCTGT--------AAAA--------------T--AAG--CAAAGCG--A--TAAACCTAAGAAGCT-GCTAAAATCAAGCTCCATCTGATTACAGAATTTTATTACTACTGCAAATTAATATTT-A-AAACTTTGA-TCATG--TTGACGCGC-ACCGCACCAAATGCAACT
gi|10 : gctcgatttaattcgagaacgaactgtaatccaatgcttaacatttttaATTCCCATGTATTACAGA-TTCTGGCTAG-T------------TTA--T------CTG--AC--------ATTATCA-CA-TAG-T------TCTA------CATA---------CATGTATATCAA-GCA----C-CA-GTGTCC-TAT-------AT---A-CACTG-ATGAGCG-----AAAGGGGGGAGGG--GGTCT--GGCTTCTAA--TGgcc
gi|12 : TCGCACTTAAAATTGTCATTTATCAT----ATA---ACT-----ATAAACGGTTTAAGGCAAACTAGA-T--CGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCTTCAAACTTT-----TG-AT-----TGGGCTCGACATTCGCccttacagttcgttctcaattaaatccgag
gi|13 : gtaTTTA----TG-AT-----CGGGCTCGATATTCGCG--TAAGCTGTATCCTT--------GAA------------------CAAGGC-AAGCG--A--TAAAGTTGAGAA--------------AGCT-CATTTGAGTG------TT--------------AATTA-------------TTGA-CCA-GA-TTGACGCCCAGATGCGCCGAATACctcagactgctaacttttgt
gi|14 : --A--CAAAACCAAACGGCT-AAGAAAATCAAGCT-CATTTGAGTG------TTTATTACCATAGCTGAATTCTACTGAA-AAACATTGT-CCACAA-TTGAAGCGCAGACGCGCCGAATAC
gi|15 : tc-AAACGTTGA-TCATGA-TTAACGCGCGGGCGCGCCGAATACAACT
gi|17 : GCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGAagccgctgcagatt
gi|2 : aaaatctgacgAATCCATTCCCATATATTACAGA-TACTGGACAA-TT-AT-TGG---CTTATTT------CTA--CC--------TATATTATAATT---T------TCCAGGATCCCATACA-TGATT-CACA-GTATCGATTTAAT--C-GGTGTGGTA-TTTG-GAGCAATTAAA-TGTTAAATGAGCGAAAAAAAAAGGGG--GGG--GG-----GGGTTTAAG--TGG-TTTTATGGGAGAG-------TAAAATTAAGGAA--G-ATATAA---TAAAGGAATA-AATAA-AAGGAA-CAAAATAAG-ATTGATT-A-AGTGCAAAA-AAATCTGACGGCCGATT----GATCGATATAAGACACT-------------GGC------TC-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA--------------G-TATGTATTCTCGCACCAAAAATTGTCATTTATCAT----ATC---AAT-----ATAAACGCTTTAAGGCAAAATATAGT-TCGTAA-----TTAGA---TATAGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGATGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGTG--TAAACTACTTCTGT--------AAAA--------------T--TAG--C-AAGCG--A--TAAACCTAAAAAGCT-GATAAAATCAAGCT-C---TGAATG------TTTATTACCACGGCAAAATCATATTTAA-AAACTTTGA-TCCTGA-TTGACGCGCAGGCGCGCTGAATACAACT
gi|3 : AATCTATTGTCATATAGTGCAGA-TACTGCCCAG-TTCATCTGAAATTTTATCT------C-A--CC--------C--------------T------TCCA------TATA-A-T-GTA-CCAA-GTA-CCAGCTA----G-GGTCT--TA-TA-G-GAGTA--T-AA-CATTGAAAGAGCG-----AATGGGAG--AGGAGGGCGTCTGGCTTCAAG--TGG-GCCTAGGCGAAAGTTTTATTC-AAATT-----A------ACAATC-TG-A-GTATACAATTA-CGT--A-CACAAT--A-ATTGA-T----------AA-AAGTTT---GA-CGGTT----GATTATTATAAGACACTAGGAAAGGATTCGGGT------TT-AGCCT---------TA---------TTTAGCATATATTTT---TTGAAATAAA-AGTGGAGACCACTG-TGTGTATCCTCGCATCTAAACACGTGATTTATTAGGGAAAAA---AATACCAAACAAACAGTTAAAGAGTAAATATA-TATCTTTA-----TCAAA---TAT-GATAGCCAAAATATACAAAGTAACATTGTATGGAGTTTGATGACTTTGAAAAATTGCTGATCCTCGAACTTTAATTCTG-AT-----TGGACTCGATATTTGTGGTTCAGTTATTTCCGT--------TTA------------------TAA--A-AAACG--AATCAAA--TAAAAAACT-A
gi|4 : gtgatttaacacgggtttattctaacgaactgcacgtcaatgtataatT----GATCAATATTAAATACT-------------GGCGAGGGACT-ATATT---------TAGCATATACATGTA----------TCAGTTGTCAT-AATAGTGGAGATCGT-GGTGTGTATTCTTGTAACTAAAATTGTCATTTAT-A-----ATA---AAT-----ATAAACTGTTTACGGCAAAATAC-----TGTAAGAGATTTACAACGCATCAGTAGT-------------------TTGC-T-GTCTTTGA--------AAAG--TGTTGTGTTTTAA-TTTT-----TA-AT-----TGGGCTTGATATTTGAG--TAAATTATTTCCTTTAAAGAAAAAAA--------------CAACAA--C-AATCG--A--TAAAGCTAAAAGGTT-ACGAAAATCAAGCT-CATCTGAATG------TTTATTTCTACAGCAAAATTCTACGGAATATACTTTGA-CAACGA-CTGACGTCCGGGTGCGCCGAATACAATT
gi|5 : aacaatttgagtcagtataaaattgatacaatttttacgtcAATCCATTCCCATGTATTGAAAA-TATTGGCCAGTTT-AT---A---CGAAATT------TTA--TCA-------CATATCA-AG-TACATGTACCATGCAGGATCCTATA-GTT-ATA-CAAG-GTTTCGATTT-------GATGTGGGACTATGTGAG-AATT-AA-a
gi|7 : tcactgatacagagatttttacaaatacgttacagtaatgtttgaatttttacaaaacataaatgaaacaaatgatcagaaaaaaggtggggtgaggattgcatgctccaaggcctggagttaaactcgaatctattcgagaacgaactataagtcaatgtataacaatttaATGCATTTTCATAAAGTGCAGA-TATTGGTCAG-T---T-TGT---CTGATTTTTTATCCCA--CCCTTCCCGATATATCA-AG-T---A------T-CAGGGTCCC---------TTGCACA-GTTTCTATTTAATATC-GTTATGGTA-TGTG-GAG----T-AA-AGATGA-----CA-----AGGAAGGA--AGGTCGGTGA--GAGTT-AAGGATGATACTTT----AAAG----------AATT-----ATTGCATAAAAAACTGCA-GTAT----TAACCATGTA-CATAAT--G-ATTAA-TAA-GATA---AA-AAGTC-----------T----GATTAATATAAGACACT-------------GGtaaacatgtatatcgaagga
gi|8 : AGT-------------------TTGT-T-GACTCAGA--------AAAA--GGATG-----------TT-----TGTAT-----T-----CGGTATTCGAT--TAACCTATTTTCGT--------AAAAACAAAAATAAAACTT--TAA--A-ACACGTCA--TAAATCTAAGTTGTTTATGAAAATCA-GTT-CATTTAAGTG------TTTATGACCACAGCAAAACTATACAAGA-AAACAATGACCCACGATTTGACGCGCGGGCTCGACGACTCCAACTaaaag
gi|9 : AATCCATTCCCATATCTTACAGA-TACTGG-AAA-TT--T-TAT---CTTATTT------CAA--CA--------GATGTCC-AT-T---A------TCCAGGATCCC----A-T-ATT-CGTG-GCATCCAT---------------GCA-TATG-GAGCGATT-AA-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGTGTTTAAAATTCCGATCAAATTCTAACGAACCTGCTTTATAATAATAAAAATCTATTCACAAAAAGTGCCAGGATACTGGCCACTTTCTCTGAATTTTAAAACAGCCTTCCAGAATATCAACTGACTGGATCTTATATGGGTATATGTAAGAATTTGAGTTTTTATGACAGTTTGGTGCAATTGGGCCAAATATATATATACATGTATTATACAGCAATAGTATTAAATTATGTAACCTTATGAAATCGATAAAAGTCTGCTGATT
Unaligned ( gi|11 ): ATGACTGATTACGAGATTTTTACTTTAGTATACGTACCAAGAATATAAATGTAAGTAAAATAAATGGGTCAGAAAAAAAATAAGAAAGTGGGCTGGGAATTGCGTAATCCCCAAGGCCTGAGGTTTACCTCGGATTTAATTGAGAACGAACTGTAAGGC
Unaligned ( gi|16 ): ATCAGAACAAATAAGATGGGGGTGGGATTTGCATGATAATTACATGTCTAAAGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333333 111111 22222 55555555555555 11 11 777777777777777777777777777777777 111 111 1 2222 2222 4444444444444 1 3333333 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22222 111 22222 444444444444444 111 5555555555555555555 111 22222222 11111 11111 11 666666666666666666666666666666666666 1111 111111 11111
lowQualScore : 5 6 77 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 5 1 2222222222222 0 0 5 0 5 333333 77 555 00000 22222222222222 1 3 11 00 99 2 222222222222222222222222222222222 000 1 666 0 3333 1 6666 2222222222222 0 0 2222222 0 7777 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 3 3 22222 444 00000 8 333333333333333 444 5 1111111111111111111 222 1 44444444 99 1 1 77777 5 22222 1 55 777777777777777777777777777777777777 77 77 6 2222 6 999999 1 33333 3 5 4 5 4
lowQualScore : . . .. .................................................................................... . . . ............. . . . . . ...... .. ... ..... .............. . . .. .. .. . ................................. ... . ... . .... . .... ............. . . ....... . .... ............................................................................................ . . . ..... ... ..... . ............... ... . ................... ... . ........ .. . . ..... . ..... . .. .................................... .. .. . .... . ...... . ..... . . . . .
lowQualScore : 7 6 44 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 0 7777777777777 7 4 7 6 7 111111 11 444 00000 66666666666666 0 2 00 22 88 5 000000000000000000000000000000000 222 0 555 0 5555 2 0000 2222222222222 0 2 2222222 8 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 2 2 66666 000 00000 2 666666666666666 000 0 7777777777777777777 555 7 22222222 22 7 4 55555 0 55555 7 88 000000000000000000000000000000000000 99 99 6 1111 7 222222 8 00000 0 7 0 7 0
consensus : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTGA-T-A-AG-TG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATA-T-TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
Reference ( family-1908 ) : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTGA-T-A-AG-TG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATA-T-TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
gi|1 : AATACATTCCCATATATTGCAGAGTACTGGACA--TT--T-TAT---CT-ATTT------CTAGATC--------AATGTAA-AA-T-----------CCAGGATCC-----A-T-ATT-CACG-GTATCAATTTA----TTGATGTGGCA-TTTG-GAGCAATT-AAATGTTGAAGGAGCG-----AAAAGGGG----------------TTTCAAG--TGG-GCCTTGGCGAGAG-------CTAAGTT-----A--G-ATATAT---TGAA-GGA-A-AATAG-CATG-AACATTTTGAGTATAAA-TCACAG-TG---CATAATTCTG--GG-CGATTTCAAGATCGATATAAGACACT-------------GAC------TTCATCCTATACATGTATA---------TATA----------T---TTGTCAT-AG--------------G-TATGTATTCTCGCAC-TAAAATTGTCATTTATCAT----ATATTAAAT-----ATAAAC--TTTAAGGGAAAATATA-----------------GA---TATCGGTAGT-------------------T-GT---GACT--GA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-ATTGCACTGGGCTCGATGTTTGCGT-TAAAC-ACTTCTGT--------AAAA--------------T--AAG--CAAAGCG--A--TAAACCTAAGAAGCT-GCTAAAATCAAGCTCCATCTGATTACAGAATTTTATTACTACTGCAAATTAATATTT-A-AAACTTTGA-TCATG--TTGACGCGC-ACCGCACCAAATGCAACT
gi|10 : gctcgatttaattcgagaacgaactgtaatccaatgcttaacatttttaATTCCCATGTATTACAGA-TTCTGGCTAG-T------------TTA--T------CTG--AC--------ATTATCA-CA-TAG-T------TCTA------CATA---------CATGTATATCAA-GCA----C-CA-GTGTCC-TAT-------AT---A-CACTG-ATGAGCG-----AAAGGGGGGAGGG--GGTCT--GGCTTCTAA--TGgcc
gi|12 : TCGCACTTAAAATTGTCATTTATCAT----ATA---ACT-----ATAAACGGTTTAAGGCAAACTAGA-T--CGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCTTCAAACTTT-----TG-AT-----TGGGCTCGACATTCGCccttacagttcgttctcaattaaatccgag
gi|13 : gtaTTTA----TG-AT-----CGGGCTCGATATTCGCG--TAAGCTGTATCCTT--------GAA------------------CAAGGC-AAGCG--A--TAAAGTTGAGAA--------------AGCT-CATTTGAGTG------TT--------------AATTA-------------TTGA-CCA-GA-TTGACGCCCAGATGCGCCGAATACctcagactgctaacttttgt
gi|14 : --A--CAAAACCAAACGGCT-AAGAAAATCAAGCT-CATTTGAGTG------TTTATTACCATAGCTGAATTCTACTGAA-AAACATTGT-CCACAA-TTGAAGCGCAGACGCGCCGAATAC
gi|15 : tc-AAACGTTGA-TCATGA-TTAACGCGCGGGCGCGCCGAATACAACT
gi|17 : GCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGAagccgctgcagatt
gi|2 : aaaatctgacgAATCCATTCCCATATATTACAGA-TACTGGACAA-TT-AT-TGG---CTTATTT------CTA--CC--------TATATTATAATT---T------TCCAGGATCCCATACA-TGATT-CACA-GTATCGATTTAAT--C-GGTGTGGTA-TTTG-GAGCAATTAAA-TGTTAAATGAGCGAAAAAAAAAGGGG--GGG--GG-----GGGTTTAAG--TGG-TTTTATGGGAGAG-------TAAAATTAAGGAA--G-ATATAA---TAAAGGAATA-AATAA-AAGGAA-CAAAATAAG-ATTGATT-A-AG-TGCAAAA-AAATCTGACGGCCGATT----GATCGATATAAGACACT-------------GGC------TC-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA--------------G-TATGTATTCTCGCACCAAAAATTGTCATTTATCAT----ATC---AAT-----ATAAACGCTTTAAGGCAAAATATAGT-TCGTAA-----TTAGA---TATAGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGATGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGTG--TAAACTACTTCTGT--------AAAA--------------T--TAG--C-AAGCG--A--TAAACCTAAAAAGCT-GATAAAATCAAGCT-C---TGAATG------TTTATTACCACGGCAAAATCATATTTAA-AAACTTTGA-TCCTGA-TTGACGCGCAGGCGCGCTGAATACAACT
gi|3 : AATCTATTGTCATATAGTGCAGA-TACTGCCCAG-TTCATCTGAAATTTTATCT------C-A--CC--------C--------------T------TCCA------TATA-A-T-GTA-CCAA-GTA-CCAGCTA----G-GGTCT--TA-TA-G-GAGTA--T-AA-CATTGAAAGAGCG-----AATGGGAG--AGGAGGGCGTCTGGCTTCAAG--TGG-GCCTAGGCGAAAGTTTTATTC-AAATT-----A------ACAATC-TG-A-GTATACAATTA-CGT--A-CACAAT--A-ATTGA-T-----------AA-AAGTTT---GA-CGGTT----GATTATTATAAGACACTAGGAAAGGATTCGGGT------TT-AGCCT---------TA---------TTTAGCATATATTTT---TTGAAATAAA-AGTGGAGACCACTG-TGTGTATCCTCGCATCTAAACACGTGATTTATTAGGGAAAAA---AATACCAAACAAACAGTTAAAGAGTAAATATA-TATCTTTA-----TCAAA---TAT-GATAGCCAAAATATACAAAGTAACATTGTATGGAGTTTGATGACTTTGAAAAATTGCTGATCCTCGAACTTTAATTCTG-AT-----TGGACTCGATATTTGTGGTTCAGTTATTTCCGT--------TTA------------------TAA--A-AAACG--AATCAAA--TAAAAAACT-A
gi|4 : gtgatttaacacgggtttattctaacgaactgcacgtcaatgtataatT----GATCAATATTAAATACT-------------GGCGAGGGACT-ATATT---------TAGCATATACATGTA----------TCAGTTGTCAT-AATAGTGGAGATCGT-GGTGTGTATTCTTGTAACTAAAATTGTCATTTAT-A-----ATA---AAT-----ATAAACTGTTTACGGCAAAATAC-----TGTAAGAGATTTACAACGCATCAGTAGT-------------------TTGC-T-GTCTTTGA--------AAAG--TGTTGTGTTTTAA-TTTT-----TA-AT-----TGGGCTTGATATTTGAG--TAAATTATTTCCTTTAAAGAAAAAAA--------------CAACAA--C-AATCG--A--TAAAGCTAAAAGGTT-ACGAAAATCAAGCT-CATCTGAATG------TTTATTTCTACAGCAAAATTCTACGGAATATACTTTGA-CAACGA-CTGACGTCCGGGTGCGCCGAATACAATT
gi|5 : aacaatttgagtcagtataaaattgatacaatttttacgtcAATCCATTCCCATGTATTGAAAA-TATTGGCCAGTTT-AT---A---CGAAATT------TTA--TCA-------CATATCA-AG-TACATGTACCATGCAGGATCCTATA-GTT-ATA-CAAG-GTTTCGATTT-------GATGTGGGACTATGTGAG-AATT-AA-a
gi|7 : tcactgatacagagatttttacaaatacgttacagtaatgtttgaatttttacaaaacataaatgaaacaaatgatcagaaaaaaggtggggtgaggattgcatgctccaaggcctggagttaaactcgaatctattcgagaacgaactataagtcaatgtataacaatttaATGCATTTTCATAAAGTGCAGA-TATTGGTCAG-T---T-TGT---CTGATTTTTTATCCCA--CCCTTCCCGATATATCA-AG-T---A------T-CAGGGTCCC---------TTGCACA-GTTTCTATTTAATATC-GTTATGGTA-TGTG-GAG----T-AA-AGATGA-----CA-----AGGAAGGA--AGGTCGGTGA--GAGTT-AAGGATGATACTTT----AAAG----------AATT-----ATTGCATAAAAAACTGCA-GTAT----TAACCATGTA-CATAAT--G-ATTAA-T-A-AGATA---AA-AAGTC-----------T----GATTAATATAAGACACT-------------GGtaaacatgtatatcgaagga
gi|8 : AGT-------------------TTGT-T-GACTCAGA--------AAAA--GGATG-----------TT-----TGTAT-----T-----CGGTATTCGAT--TAACCTATTTTCGT--------AAAAACAAAAATAAAACTT--TAA--A-ACACGTCA--TAAATCTAAGTTGTTTATGAAAATCA-GTT-CATTTAAGTG------TTTATGACCACAGCAAAACTATACAAGA-AAACAATGACCCACGATTTGACGCGCGGGCTCGACGACTCCAACTaaaag
gi|9 : AATCCATTCCCATATCTTACAGA-TACTGG-AAA-TT--T-TAT---CTTATTT------CAA--CA--------GATGTCC-AT-T---A------TCCAGGATCCC----A-T-ATT-CGTG-GCATCCAT---------------GCA-TATG-GAGCGATT-AA-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGTGTTTAAAATTCCGATCAAATTCTAACGAACCTGCTTTATAATAATAAAAATCTATTCACAAAAAGTGCCAGGATACTGGCCACTTTCTCTGAATTTTAAAACAGCCTTCCAGAATATCAACTGACTGGATCTTATATGGGTATATGTAAGAATTTGAGTTTTTATGACAGTTTGGTGCAATTGGGCCAAATATATATATACATGTATTATACAGCAATAGTATTAAATTATGTAACCTTATGAAATCGATAAAAGTCTGCTGATT
Unaligned ( gi|11 ): ATGACTGATTACGAGATTTTTACTTTAGTATACGTACCAAGAATATAAATGTAAGTAAAATAAATGGGTCAGAAAAAAAATAAGAAAGTGGGCTGGGAATTGCGTAATCCCCAAGGCCTGAGGTTTACCTCGGATTTAATTGAGAACGAACTGTAAGGC
Unaligned ( gi|16 ): ATCAGAACAAATAAGATGGGGGTGGGATTTGCATGATAATTACATGTCTAAAGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333333 111111 22222 55555555555555 11 11 777777777777777777777777777777777 111 111 1 2222 2222 4444444444444 1 3333333 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22222 111 22222 444444444444444 111 5555555555555555555 111 22222222 11111 11111 11 666666666666666666666666666666666666 1111 111111 11111
lowQualScore : 5 6 77 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 5 1 2222222222222 0 0 5 0 5 333333 77 555 00000 22222222222222 1 3 11 00 99 2 222222222222222222222222222222222 000 1 666 0 3333 1 6666 2222222222222 0 0 2222222 0 7777 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 3 3 22222 444 00000 8 333333333333333 444 5 1111111111111111111 222 1 44444444 99 1 1 77777 5 22222 1 55 777777777777777777777777777777777777 77 77 6 2222 6 999999 1 33333 3 5 4 5 4
lowQualScore : . . .. .................................................................................... . . . ............. . . . . . ...... .. ... ..... .............. . . .. .. .. . ................................. ... . ... . .... . .... ............. . . ....... . .... ............................................................................................ . . . ..... ... ..... . ............... ... . ................... ... . ........ .. . . ..... . ..... . .. .................................... .. .. . .... . ...... . ..... . . . . .
lowQualScore : 7 6 44 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 0 7777777777777 7 4 7 6 7 111111 11 444 00000 66666666666666 0 2 00 22 88 5 000000000000000000000000000000000 222 0 555 0 5555 2 0000 2222222222222 0 2 2222222 8 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 2 2 66666 000 00000 2 666666666666666 000 0 7777777777777777777 555 7 22222222 22 7 4 55555 0 55555 7 88 000000000000000000000000000000000000 99 99 6 1111 7 222222 8 00000 0 7 0 7 0
consensus : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTGA-T-A-AG-TG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATA-T-TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
Reference ( family-1908 ) : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTGA-T-A-AG-TG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATA-T-TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
gi|1 : AATACATTCCCATATATTGCAGAGTACTGGACA--TT--T-TAT---CT-ATTT------CTAGATC--------AATGTAA-AA-T-----------CCAGGATCC-----A-T-ATT-CACG-GTATCAATTTA----TTGATGTGGCA-TTTG-GAGCAATT-AAATGTTGAAGGAGCG-----AAAAGGGG----------------TTTCAAG--TGG-GCCTTGGCGAGAG-------CTAAGTT-----A--G-ATATAT---TGAA-GGA-A-AATAG-CATG-AACATTTTGAGTATAAA-TCACAG-TG---CATAATTCTG--GG-CGATTTCAAGATCGATATAAGACACT-------------GAC------TTCATCCTATACATGTATA---------TATA----------T---TTGTCAT-AG--------------G-TATGTATTCTCGCAC-TAAAATTGTCATTTATCAT----ATATTAAAT-----ATAAAC--TTTAAGGGAAAATATA-----------------GA---TATCGGTAGT-------------------T-GT---GACT--GA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-ATTGCACTGGGCTCGATGTTTGCGT-TAAAC-ACTTCTGT--------AAAA--------------T--AAG--CAAAGCG--A--TAAACCTAAGAAGCT-GCTAAAATCAAGCTCCATCTGATTACAGAATTTTATTACTACTGCAAATTAATATTT-A-AAACTTTGA-TCATG--TTGACGCGC-ACCGCACCAAATGCAACT
gi|10 : gctcgatttaattcgagaacgaactgtaatccaatgcttaacatttttaATTCCCATGTATTACAGA-TTCTGGCTAG-T------------TTA--T------CTG--AC--------ATTATCA-CA-TAG-T------TCTA------CATA---------CATGTATATCAA-GCA----C-CA-GTGTCC-TAT-------AT---A-CACTG-ATGAGCG-----AAAGGGGGGAGGG--GGTCT--GGCTTCTAA--TGgcc
gi|12 : TCGCACTTAAAATTGTCATTTATCAT----ATA---ACT-----ATAAACGGTTTAAGGCAAACTAGA-T--CGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCTTCAAACTTT-----TG-AT-----TGGGCTCGACATTCGCccttacagttcgttctcaattaaatccgag
gi|13 : gtaTTTA----TG-AT-----CGGGCTCGATATTCGCG--TAAGCTGTATCCTT--------GAA------------------CAAGGC-AAGCG--A--TAAAGTTGAGAA--------------AGCT-CATTTGAGTG------TT--------------AATTA-------------TTGA-CCA-GA-TTGACGCCCAGATGCGCCGAATACctcagactgctaacttttgt
gi|14 : --A--CAAAACCAAACGGCT-AAGAAAATCAAGCT-CATTTGAGTG------TTTATTACCATAGCTGAATTCTACTGAA-AAACATTGT-CCACAA-TTGAAGCGCAGACGCGCCGAATAC
gi|15 : tc-AAACGTTGA-TCATGA-TTAACGCGCGGGCGCGCCGAATACAACT
gi|17 : GCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGAagccgctgcagatt
gi|2 : aaaatctgacgAATCCATTCCCATATATTACAGA-TACTGGACAA-TT-AT-TGG---CTTATTT------CTA--CC--------TATATTATAATT---T------TCCAGGATCCCATACA-TGATT-CACA-GTATCGATTTAAT--C-GGTGTGGTA-TTTG-GAGCAATTAAA-TGTTAAATGAGCGAAAAAAAAAGGGG--GGG--GG-----GGGTTTAAG--TGG-TTTTATGGGAGAG-------TAAAATTAAGGAA--G-ATATAA---TAAAGGAATA-AATAA-AAGGAA-CAAAATAAG-ATTGATT-A-AG-TGCAAAA-AAATCTGACGGCCGATT----GATCGATATAAGACACT-------------GGC------TC-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA--------------G-TATGTATTCTCGCACCAAAAATTGTCATTTATCAT----ATC---AAT-----ATAAACGCTTTAAGGCAAAATATAGT-TCGTAA-----TTAGA---TATAGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGATGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGTG--TAAACTACTTCTGT--------AAAA--------------T--TAG--C-AAGCG--A--TAAACCTAAAAAGCT-GATAAAATCAAGCT-C---TGAATG------TTTATTACCACGGCAAAATCATATTTAA-AAACTTTGA-TCCTGA-TTGACGCGCAGGCGCGCTGAATACAACT
gi|3 : AATCTATTGTCATATAGTGCAGA-TACTGCCCAG-TTCATCTGAAATTTTATCT------C-A--CC--------C--------------T------TCCA------TATA-A-T-GTA-CCAA-GTA-CCAGCTA----G-GGTCT--TA-TA-G-GAGTA--T-AA-CATTGAAAGAGCG-----AATGGGAG--AGGAGGGCGTCTGGCTTCAAG--TGG-GCCTAGGCGAAAGTTTTATTC-AAATT-----A------ACAATC-TG-A-GTATACAATTA-CGT--A-CACAAT--A-ATTGA-T-----------AA-AAGTTT---GA-CGGTT----GATTATTATAAGACACTAGGAAAGGATTCGGGT------TT-AGCCT---------TA---------TTTAGCATATATTTT---TTGAAATAAA-AGTGGAGACCACTG-TGTGTATCCTCGCATCTAAACACGTGATTTATTAGGGAAAAA---AATACCAAACAAACAGTTAAAGAGTAAATATA-TATCTTTA-----TCAAA---TAT-GATAGCCAAAATATACAAAGTAACATTGTATGGAGTTTGATGACTTTGAAAAATTGCTGATCCTCGAACTTTAATTCTG-AT-----TGGACTCGATATTTGTGGTTCAGTTATTTCCGT--------TTA------------------TAA--A-AAACG--AATCAAA--TAAAAAACT-A
gi|4 : gtgatttaacacgggtttattctaacgaactgcacgtcaatgtataatT----GATCAATATTAAATACT-------------GGCGAGGGACT-ATATT---------TAGCATATACATGTA----------TCAGTTGTCAT-AATAGTGGAGATCGT-GGTGTGTATTCTTGTAACTAAAATTGTCATTTAT-A-----ATA---AAT-----ATAAACTGTTTACGGCAAAATAC-----TGTAAGAGATTTACAACGCATCAGTAGT-------------------TTGC-T-GTCTTTGA--------AAAG--TGTTGTGTTTTAA-TTTT-----TA-AT-----TGGGCTTGATATTTGAG--TAAATTATTTCCTTTAAAGAAAAAAA--------------CAACAA--C-AATCG--A--TAAAGCTAAAAGGTT-ACGAAAATCAAGCT-CATCTGAATG------TTTATTTCTACAGCAAAATTCTACGGAATATACTTTGA-CAACGA-CTGACGTCCGGGTGCGCCGAATACAATT
gi|5 : aacaatttgagtcagtataaaattgatacaatttttacgtcAATCCATTCCCATGTATTGAAAA-TATTGGCCAGTTT-AT---A---CGAAATT------TTA--TCA-------CATATCA-AG-TACATGTACCATGCAGGATCCTATA-GTT-ATA-CAAG-GTTTCGATTT-------GATGTGGGACTATGTGAG-AATT-AA-a
gi|7 : tcactgatacagagatttttacaaatacgttacagtaatgtttgaatttttacaaaacataaatgaaacaaatgatcagaaaaaaggtggggtgaggattgcatgctccaaggcctggagttaaactcgaatctattcgagaacgaactataagtcaatgtataacaatttaATGCATTTTCATAAAGTGCAGA-TATTGGTCAG-T---T-TGT---CTGATTTTTTATCCCA--CCCTTCCCGATATATCA-AG-T---A------T-CAGGGTCCC---------TTGCACA-GTTTCTATTTAATATC-GTTATGGTA-TGTG-GAG----T-AA-AGATGA-----CA-----AGGAAGGA--AGGTCGGTGA--GAGTT-AAGGATGATACTTT----AAAG----------AATT-----ATTGCATAAAAAACTGCA-GTAT----TAACCATGTA-CATAAT--G-ATTAA-T-A-AGATA---AA-AAGTC-----------T----GATTAATATAAGACACT-------------GGtaaacatgtatatcgaagga
gi|8 : AGT-------------------TTGT-T-GACTCAGA--------AAAA--GGATG-----------TT-----TGTAT-----T-----CGGTATTCGAT--TAACCTATTTTCGT--------AAAAACAAAAATAAAACTT--TAA--A-ACACGTCA--TAAATCTAAGTTGTTTATGAAAATCA-GTT-CATTTAAGTG------TTTATGACCACAGCAAAACTATACAAGA-AAACAATGACCCACGATTTGACGCGCGGGCTCGACGACTCCAACTaaaag
gi|9 : AATCCATTCCCATATCTTACAGA-TACTGG-AAA-TT--T-TAT---CTTATTT------CAA--CA--------GATGTCC-AT-T---A------TCCAGGATCCC----A-T-ATT-CGTG-GCATCCAT---------------GCA-TATG-GAGCGATT-AA-
blockSeqs : . C GT TATACGAAATTTTATCACATATCAAGTACATGTACCATGCAGGATCCTATAGTTATA T T A TTTAATATCGTT C T CAATTA C AAT AAAAA AGGAGGGCGTCT C C GA TA AT G TAAAATTAAGGAAGATATAA AAG A TAC C GAA A AAG TTAAGTGCAA . TGACGGC . AGGAAAGGATTCGGGTTTAGCCTTATTTAGCATATATTTTTTGAAATAAAAGTGGAGACCACT G T C GGGAA . ACCAA G TGTAAGAGAT ACG C CAAAATATACAAAGTAACA ATG T TGACTTTG AT A A AATTC T . C GT AAAAACAAAAATAAAACTTTAAA TC AT G TATG . . A GGAAT A C C T A
blockSeqs : . A G TTGTCTGATTTTTTATCCCACCCTTCCCGATATATCAAGTATCAGGGTCCCTTG C . G TTTAATCGGT . . CGATT T AAA . GAGGGGGTCT G T . T AG C TTTTATTCAAATTAACAATC CA T TA . GTA C A TAAGATA . TGA . GGCGAGGGACTATATTTAGCATATACATGTATCAGTTGTCATAATAGTGGAGATCGT . C C T . . G AGTTCGTAA . A . T T . . A A A . . C . TAAAGAAAAAAACAACAAC . . A AAG . . G TGAA G . T . A
blockSeqs : . C A TATTGGCTTATTTCTACCTATATTATAATTTTCCAGGATCCCATACATGATT A . C GCTAGGGT . . AATT C AT . AGGTCGGTGA C C . G T . AATTATTGCATAAAAAAC A T T . A T G T . . . GGCTCATCCTTATGTATTTGTCATAA . C T T . . A ATATCTTTA . C . T T . . A A . . . T . GAACAAGGC . . C GAT . . A TTAA T . T . G
blockSeqs : . C G TTTATCTTATTTCAACAGATGTCCATTATCCAGGATCCCATATT A . G GCACCA . . TAT A A . GGGGG G . . . C . . . . T ATCGTAA . . . T T . . A A . . . T . AAAATTAGC . . G ACG . . A AAGA T . C . A
blockSeqs : . T G TCATCTGAAATTTTATCTCACCCTTCCATATAATGTA C . T TTTGAT . . AT . T C . . T . . . . A . TTATAAA . . T . . . . . A . C . G
blockSeqs : . . A TTATCTGACATTATCACATAGTTCTACATA T . C T . . T . . . . . A . . . . . . . G
blockSeqs : . . .
blockSeqCons : G* NCTAACGT***** CAATT* C* GGGGGGT******* **** *** ATCGTAA******** T** ***** ** AAAANTAAN*************************** ****** TNAA*
originalCons : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTA----C-GATGTGGCA-TATG-GAGCAATT-AA-CGTTGAANGAGCG-----AAAAGGGG--GGG--GGCGT--GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTGA-T-A-AG-TG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATA-T-TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT--------AAAA--------------T--TAA--C-AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
finalCons : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC--------NATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNANCTAACGT-----GTGGCA-TATG-GAGCAATT-AAC-GTTGAANGAGCG-----AAAAGGGGGGGGGGT-------GGNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTGA-T-A-AG-TG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAGGCAAAATATATCGTAA--------TTAGA---TATCGGTAGT-------------------TTGTT--GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGTAAAANTAAN---------------------------AAGCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGTGTTTAAAATTCCGATCAAATTCTAACGAACCTGCTTTATAATAATAAAAATCTATTCACAAAAAGTGCCAGGATACTGGCCACTTTCTCTGAATTTTAAAACAGCCTTCCAGAATATCAACTGACTGGATCTTATATGGGTATATGTAAGAATTTGAGTTTTTATGACAGTTTGGTGCAATTGGGCCAAATATATATATACATGTATTATACAGCAATAGTATTAAATTATGTAACCTTATGAAATCGATAAAAGTCTGCTGATT
Unaligned ( gi|11 ): ATGACTGATTACGAGATTTTTACTTTAGTATACGTACCAAGAATATAAATGTAAGTAAAATAAATGGGTCAGAAAAAAAATAAGAAAGTGGGCTGGGAATTGCGTAATCCCCAAGGCCTGAGGTTTACCTCGGATTTAATTGAGAACGAACTGTAAGGC
Unaligned ( gi|16 ): ATCAGAACAAATAAGATGGGGGTGGGATTTGCATGATAATTACATGTCTAAAGGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333333 111111 1 1111 44444444 11 11 777777777777777777777777777777777 111 111 1 2222 2222 4444444444444 1 3333333 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 22222 111 22222 22222222222222 111 5555555555555555555 111 22222222 11111 11111 11 5555555555555555555555555555555555555 1111 111111 11111
lowQualScore : 5 6 77 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 1 5 1 9999999999999 0 1 0 5 333333 77 0 1 7777 4444 22222222 1 11 00 99 2 222222222222222222222222222222222 000 1 666 0 3333 1 6666 2222222222222 0 0 2222222 0 7777 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 3 3 22222 444 00000 8 8 8 88888888888888 444 5 1111111111111111111 222 1 44444444 99 1 1 77777 5 22222 1 55 1111111111111111111111111111111111111 77 77 6 2222 6 999999 1 33333 3 5 4 5 4
lowQualScore : . . .. .................................................................................... . . . ............. . . . . ...... .. . . .... .... ........ . .. .. .. . ................................. ... . ... . .... . .... ............. . . ....... . .... ............................................................................................ . . . ..... ... ..... . . . .............. ... . ................... ... . ........ .. . . ..... . ..... . .. ..................................... .. .. . .... . ...... . ..... . . . . .
lowQualScore : 7 6 44 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 0 4444444444444 7 4 6 7 111111 11 6 0 0000 6666 66666666 0 00 22 88 5 000000000000000000000000000000000 222 0 555 0 5555 2 0000 2222222222222 0 2 2222222 8 0000 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 0 2 2 66666 000 00000 2 0 0 22222222222222 000 0 7777777777777777777 555 7 22222222 22 7 4 55555 0 55555 7 88 7777777777777777777777777777777777777 99 99 6 1111 7 222222 8 00000 0 7 0 7 0
consensus : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC-N--------ATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNATTTAA---C--G-TGTGGCATATG-GAGCAATT-AA-CGTTGAACGAGCG----AAAAGGGGGGGGGGG----TG-GNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTGA-T-A-AG-TG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAG-GCAAA-ATATA--TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT---------AAA-AATAA--NAA--------------GCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
Reference ( family-1908 ) : AATCCATTCCCATATATTGCAGA-TACTGGCCAG-TT-AT-TGN---CTTATTT------CTA--CC-N--------ATATCA-AA-T---T------TCCAGGATCCCATA-A-T-ATT-CACG-GTATCNANCTAA---C--G-TGTGGCATATG-GAGCAATT-AA-CGTTGAANGAGCG----AAAAGGGGGGGGGG-----TG-GNTTCAAG--TGG-GCCTNGGCGAGAG-------C-AAATT-----A--G-ATATAA---TGAA-GNATA-AATAA-CATG-A-CATAATGAG-ATTGA-T-A-AG-TG---AA-AAGTCTG--GG-CGATT----GATCGATATAAGACACT-------------GGC------TT-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA-AGTGGAGACCGC-G-TGTGTATTCTCGCACCTAAAATTGTCATTTATCAT----ATA---AAT-----ATAAACGGTTTAAG-GCAAA-ATATA--TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGCG--TAAACTATTTCCGT---------AAA-ANTAA--NAA--------------GCG--A--TAAANCTAAGAAGCT-ACGAAAATCAAGCT-CATTTGAGTG------TTTATTACCACAGCAAAATTATACTNAA-AAACNTTGA-CCACGA-TTGACGCGCGGGCGCGCCGAATACAACT
gi|1 : AATACATTCCCATATATTGCAGAGTACTGGACA--TT--T-TAT---CT-ATTT------CTAGATC-A--------ATGTAA-AA-T-----------CCAGGATCC-----A-T-ATT-CACG-GTATCAATTTAT---T--GATGTGGCATTTG-GAGCAATT-AAATGTTGAAGGAGCG----AAAAGGGG---------------TTTCAAG--TGG-GCCTTGGCGAGAG-------CTAAGTT-----A--G-ATATAT---TGAA-GGA-A-AATAG-CATG-AACATTTTGAGTATAAA-TCACAG-TG---CATAATTCTG--GG-CGATTTCAAGATCGATATAAGACACT-------------GAC------TTCATCCTATACATGTATA---------TATA----------T---TTGTCAT-AG--------------G-TATGTATTCTCGCAC-TAAAATTGTCATTTATCAT----ATATTAAAT-----ATAAAC--TTTAAG-GGAAA-ATATA----------------GA---TATCGGTAGT-------------------T-GT---GACT--GA--------AAAA--TGCTGAGCCTCAAACTTT-----TG-ATTGCACTGGGCTCGATGTTTGCGT-TAAAC-ACTTCTGT---------AAA-A-TAAGCAAA--------------GCG--A--TAAACCTAAGAAGCT-GCTAAAATCAAGCTCCATCTGATTACAGAATTTTATTACTACTGCAAATTAATATTT-A-AAACTTTGA-TCATG--TTGACGCGC-ACCGCACCAAATGCAACT
gi|10 : gctcgatttaattcgagaacgaactgtaatccaatgcttaacatttttaATTCCCATGTATTACAGA-TTCTGGCTAG-T------------TTA--T------CTG--AC-A--------TTATCA-CA-TAG-T------TCTA------CATA---------CATGTATATCAAGC--A---C--C-AGTGTCCTAT-------AT---A-CACTG-ATGAGCG----AAAGGGGGGAGGGGGTC--TG-GCTTCTAA--TGgcc
gi|12 : TCGCACTTAAAATTGTCATTTATCAT----ATA---ACT-----ATAAACGGTTTAAG-GCAAA-CTAGA--TCGTAA-----TTAGA---TATCGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGCTGAGCTTCAAACTTT-----TG-AT-----TGGGCTCGACATTCGCccttacagttcgttctcaattaaatccgag
gi|13 : gtaTTTA----TG-AT-----CGGGCTCGATATTCGCG--TAAGCTGTATCCTT---------GAA-CAAGG--CAA--------------GCG--A--TAAAGTTGAGAA--------------AGCT-CATTTGAGTG------TT--------------AATTA-------------TTGA-CCA-GA-TTGACGCCCAGATGCGCCGAATACctcagactgctaacttttgt
gi|14 : --A--CAAAACCAAACGGCT-AAGAAAATCAAGCT-CATTTGAGTG------TTTATTACCATAGCTGAATTCTACTGAA-AAACATTGT-CCACAA-TTGAAGCGCAGACGCGCCGAATAC
gi|15 : tc-AAACGTTGA-TCATGA-TTAACGCGCGGGCGCGCCGAATACAACT
gi|17 : GCTGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGAagccgctgcagatt
gi|2 : aaaatctgacgAATCCATTCCCATATATTACAGA-TACTGGACAA-TT-AT-TGG---CTTATTT------CTA--CC-T--------ATATTATAATT---T------TCCAGGATCCCATACA-TGATT-CACA-GTATCGATTTAA---TCGG-TGTGGTATTTG-GAGCAATTAAA-TGTTAAATGAGCGAAAAAAAAAGGGGGGGGG------G-GGTTTAAG--TGG-TTTTATGGGAGAG-------TAAAATTAAGGAA--G-ATATAA---TAAAGGAATA-AATAA-AAGGAA-CAAAATAAG-ATTGATT-A-AG-TGCAAAA-AAATCTGACGGCCGATT----GATCGATATAAGACACT-------------GGC------TC-ATCCT---------TA---------TGTA----------T---TTGTCAT-AA--------------G-TATGTATTCTCGCACCAAAAATTGTCATTTATCAT----ATC---AAT-----ATAAACGCTTTAAG-GCAAA-ATATAGTTCGTAA-----TTAGA---TATAGGTAGT-------------------TTGT-T-GACTTTGA--------AAAA--TGATGAGCCTCAAACTTT-----TG-AT-----TGGGCTCGATATTCGTG--TAAACTACTTCTGT---------AAA-ATTAG--CAA--------------GCG--A--TAAACCTAAAAAGCT-GATAAAATCAAGCT-C---TGAATG------TTTATTACCACGGCAAAATCATATTTAA-AAACTTTGA-TCCTGA-TTGACGCGCAGGCGCGCTGAATACAACT
gi|3 : AATCTATTGTCATATAGTGCAGA-TACTGCCCAG-TTCATCTGAAATTTTATCT------C-A--CC-C----------------------T------TCCA------TATA-A-T-GTA-CCAA-GTA-CCAGCTAG---G--G-TCT--TATA-G-GAGTA--T-AA-CATTGAAAGAGCG----AATGGGAGAGGAGGGCGTCTG-GCTTCAAG--TGG-GCCTAGGCGAAAGTTTTATTC-AAATT-----A------ACAATC-TG-A-GTATACAATTA-CGT--A-CACAAT--A-ATTGA-T-----------AA-AAGTTT---GA-CGGTT----GATTATTATAAGACACTAGGAAAGGATTCGGGT------TT-AGCCT---------TA---------TTTAGCATATATTTT---TTGAAATAAA-AGTGGAGACCACTG-TGTGTATCCTCGCATCTAAACACGTGATTTATTAGGGAAAAA---AATACCAAACAAACAGTTAAAGAGTAAATATATA--TCTTTA-----TCAAA---TAT-GATAGCCAAAATATACAAAGTAACATTGTATGGAGTTTGATGACTTTGAAAAATTGCTGATCCTCGAACTTTAATTCTG-AT-----TGGACTCGATATTTGTGGTTCAGTTATTTCCGT---------TTA---TAA--AAA--------------ACG--AATCAAA--TAAAAAACT-A
gi|4 : gtgatttaacacgggtttattctaacgaactgcacgtcaatgtataatT----GATCAATATTAAATACT-------------GGCGAGGGACT-ATATT---------TAGCATATACATGTA----------TCAGTTGTCAT-AATAGTGGAGATCGT-GGTGTGTATTCTTGTAACTAAAATTGTCATTTAT-A-----ATA---AAT-----ATAAACTGTTTACG-GCAAA-ATAC----TGTAAGAGATTTACAACGCATCAGTAGT-------------------TTGC-T-GTCTTTGA--------AAAG--TGTTGTGTTTTAA-TTTT-----TA-AT-----TGGGCTTGATATTTGAG--TAAATTATTTCCTTTAAAGAAAAAAACAACAA--CAA--------------TCG--A--TAAAGCTAAAAGGTT-ACGAAAATCAAGCT-CATCTGAATG------TTTATTTCTACAGCAAAATTCTACGGAATATACTTTGA-CAACGA-CTGACGTCCGGGTGCGCCGAATACAATT
gi|5 : aacaatttgagtcagtataaaattgatacaatttttacgtcAATCCATTCCCATGTATTGAAAA-TATTGGCCAGTTT-AT---A---CGAAATT------TTA--TCAC--------ATATCA-AG-TACATGTACCATGCAGGATCCTATA-GTT-ATA-CAAG-GTTTCGATTTGA---T--G-TGGGAC-TATGTGAG-AATT-AA-a
gi|7 : tcactgatacagagatttttacaaatacgttacagtaatgtttgaatttttacaaaacataaatgaaacaaatgatcagaaaaaaggtggggtgaggattgcatgctccaaggcctggagttaaactcgaatctattcgagaacgaactataagtcaatgtataacaatttaATGCATTTTCATAAAGTGCAGA-TATTGGTCAG-TT----TGT---CTGATTTTTTATCCCA--CC-CTTCCCGATATATCA-AG-T---A------T-CAGGGTCCC---------TTGCACA-GTTTCTATTTAATATC--GTTATGGTATGTG-GAG----T-AA-AGATG-ACAAG-------GAAGGAAGGTCGG-----TGAGAGTTAAGGATGATACTTT----AAAG----------AATT-----ATTGCATAAAAAACTGCA-GTAT----TAACCATGTA-CATAAT--G-ATTAA-T-A-AGATA---AA-AAGTC-----------T----GATTAATATAAGACACT-------------GGtaaacatgtatatcgaagga
gi|8 : AGT-------------------TTGT-T-GACTCAGA--------AAAA--GGATG-----------TT-----TGTAT-----T-----CGGTATTCGAT--TAACCTATTTTCGT---------AAA-AACAA--AAATAAAACTTTAAAACACGTCA--TAAATCTAAGTTGTTTATGAAAATCA-GTT-CATTTAAGTG------TTTATGACCACAGCAAAACTATACAAGA-AAACAATGACCCACGATTTGACGCGCGGGCTCGACGACTCCAACTaaaag
gi|9 : AATCCATTCCCATATCTTACAGA-TACTGG-AAA-TT--T-TAT---CTTATTT------CAA--CA-G--------ATGTCC-AT-T---A------TCCAGGATCCC----A-T-ATT-CGTG-GCATCCAT----------------GCATATG-GAGCGATT-AA-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGTGTTTAAAATTCCGATCAAATTCTAACGAACCTGCTTTATAATAATAAAAATCTATTCACAAAAAGTGCCAGGATACTGGCCACTTTCTCTGAATTTTAAAACAGCCTTCCAGAATATCAACTGACTGGATCTTATATGGGTATATGTAAGAATTTGAGTTTTTATGACAGTTTGGTGCAATTGGGCCAAATATATATATACATGTATTATACAGCAATAGTATTAAATTATGTAACCTTATGAAATCGATAAAAGTCTGCTGATT
Unaligned ( gi|11 ): ATGACTGATTACGAGATTTTTACTTTAGTATACGTACCAAGAATATAAATGTAAGTAAAATAAATGGGTCAGAAAAAAAATAAGAAAGTGGGCTGGGAATTGCGTAATCCCCAAGGCCTGAGGTTTACCTCGGATTTAATTGAGAACGAACTGTAAGGC
Unaligned ( gi|16 ): ATCAGAACAAATAAGATGGGGGTGGGATTTGCATGATAATTACATGTCTAAAGGC