lowQualScore : 11111 1 222222222 1111111 222 1111111 444444444444444444444 111111 11 111 111 1 111111 22222222 2222 1
lowQualScore : 6 33333 4 4 66 4 666666666 0 5 0 6 88 5555555 6666 1 4 777 4 3 0 4444444 333333333333333333333 0 5 5 4 222222 11 4 2 444 555 4 0 1 222222 66 4 5 99999999 1 3333 888 1 3 1
lowQualScore : . ..... . . .. . ......... . . . . .. ....... .... . . ... . . . ....... ..................... . . . . ...... .. . . ... ... . . . ...... .. . . ........ . .... ... . . .
lowQualScore : 0 77777 1 4 11 4 888888888 1 0 9 6 33 8888888 2222 9 4 888 4 9 8 0000000 222222222222222222222 3 0 6 4 888888 44 4 0 222 999 4 8 9 888888 99 0 7 55555555 0 0000 333 7 3 0
consensus : CAACTGTCAATATA--C--TAATTACTATAA-GTAGACA--TGATA-ATTT-------CGTAGTTA-CATTAGATAGAAAANTAA------GTA--AATATACAT-G---T-AAAGGTCATTTG----A-ATAA------TACA---T-------GGTG-TCAGGTAGTCATACAGTA-AATC------TACCA-GAATC-TCCGATA-NACT--TTTG-AACAGAGGAAAAA------A--TNAGTTG-ATTTA-CA--CG-ATCATGTT-TNNATT-CATCTCCC-CATAAAAGTAAAAAT
Reference ( gi|5 ) : CAACTGTCAATACA--C--TAAATACTATAA-GTAGACA--TGATA-ATTT-------CATAGTTA-CATTAGATAGAAAAATAA------ATA--AATATACAT-G---T-AAAGGTCATTTG----A-ATAA------CACA---T-------GATG-TCAGGTAGTCATACAGTA-AATC------TACCA-AAATC-TCTGATA-AACT--CTTG-AACGGAGGAAAAA------A--TGAGTTG-ATTTA-TA--TA-ATCATATT-GAGATT-CATCTCCC-CATAAAAATAAAAATGGGGAGTATTTTTGAGTAT
gi|10 : CAACTGTCAATATA--T--TAATTACTATAA-GTAGACA--TGATA-ATTT-------CTTCGTTA-CATCAGATAGGAAAATAA------ATA--GATATACAT-GTATT-AAAGGTCATTCG----A-ATAAT-----TACA---T-------GGTG-TCAGGTAGTCATACAGTA-AATC------TACCA-GAATC-TCTGATA-AACT--TTTG-CATAGAGGAAAAA------A--TAAGTTG-
gi|2 : CAACTGTCAATATA--TATTAATTACTATAA-GTAGACA--TGATA-ATTTGTAATTACATTG-TA-CATTAGAAAGAAAACTAAGTGATGGTA--AATAT---T-G---C-CAATAT-AT----------TAA------TATA---TG------GATG-TGAGG-AGTCATACAGTA-AATC------TACCA-GAATC-TCTGAT--TACT--TTTG-AACAGAGG--AAA------A--TTAGTTG-ATTTA-CA--TC-ATCATGTT-TAGATT-CATCTC
gi|3 : aaCAACTGTCAATATA--T--TAATTACTATAAGGTAGACAATCGATA---TT-------TGCAGTTA-CATTAG---GAAAGAAAA------CTAGTAATAC-CAT-G---T-GATGGTAATTTGGATTA-ATAT------AATA---T-------GATG-TAGAGTAGTCCTAAGGTA-AATC-------ACCAGGAATCTTCCGAT--AACT---TTG-AACAGAGGAAAAA------AATTGAGTTG-ATTTA-CAATCG-TTCATGTT-TGGATTCCATCTCCC-CATAACAATAAAtgttgatggggatattacaataaaggcgaggaatgttattttcgcgaatgg
gi|7 : acCATCTGTTATTATA--C--TAATTATTATGA-CTAGACA--TGATA-ATTT-------CTTAGGTA-CATTAAATAGAAAAATAA------ATA--TACATACTT-GTATT-AAAGGTCATT-----------------------------------TG-TC---TGGCCATACAGTA-AATC------T--------------------ACT--TTTG-AACCGATG-AAAC------A--TAAGATG-GTTTA-TA--TC-ATCATGTT-TCTATC-C--CTCCCGCCTAAAAGTGACAATtgacatcgatatatcaggtatctgagta
gi|15 : aCAACTGTCAATATA--C--TAATTTCTATAA-GTAGACA--TGATA-ATcaataatatgaaactgagtgaaa
gi|9 : aaTGTCAATATATAC--TAATTACTATAA-GTGAATA--TGATA-ATTT--------GTAGTTA-CATTAGA-AGAAAACTAA------GTA--A-TACACAT-GG--T-GATGGTAATTTG----A-TTAA------TATAAA-T-------GATG-G-AGGTAGTCATACAGTA-AATC------TACCA-GAATC-TCCGATA-TTAT--TTTG-AACAGAGGAAAAA------
gi|4 : GTCAATATATAC--TAATTACAATAA-GTAGACA--TGATA-ATAT-------TGTAGTTA-CATTAGAAAGAAAAGAAA------GTA--A-TACACAT-G---T-GATGGTAATTTG----A-TTAA------TATAATAT-------GGTG-TGAGGTAGTCATACAG-A-AATC------TACCA-GAATC-TCCGATA-TACT--TTTG-AACAGAGGAAAAA------A--TTAGTTG-ATTTACCA--TATATTGTATTGGACACC-CATCCCtccttggtggtctcatcat
gi|11 : TATA--C--CAATTACTATA--TTAAGCA--TGATA-ATTT-------CTTAGTTA-CAATAAATAGAAAACTAA------GTA--AATATACAT-GTAAT-AAAGGCCATTTG----A-ATAA------TGCA---T-------GAaaacaactgaagcgtattcaagcaatggtcttataa
gi|1 : c--C--TAGATA----AA-GTAGGCA--AG-TATATTC-------TGTAGTTATCATTA-ACAGAGAA-TA--------TG--AATGTACATTA---TCAAAGGTCATTTG----ATATAA------AGCA---TCGGTTCCGGTGTTCATGTAGTCAAACA-TACAAAC------TTCCA-GAA---TCCGATATATCTAGTTTGAAACAGAGAAAAAAAACGTTA--TAAGTTACATCCA-TC--CA-TTTACATT-TAAA---CATCTC
gi|8 : gagtatatttctgttgataatacacatgtataagcaaaagttttgaatcacaattcttcaacttacggttctcaaatatacatgtaaaacgaaccgtcgaatttacattcttacatttgTAAGTAGAGAAA-AC------ATA--ACTATACAT-G---T-AAAAGTCGTTTG----G-ATAATACATGTACA---T-------GGTG-TCAGGTAGTCATGGAGTA-AACCTACATGTACCA-GAATC-TCTGATA-ACCT--TTTG-AAC--AGGAAAAA------A--TG-------------------ATCATGTT-TTAATT-CGTCTTCC-AATAAAAGTAAAgtacaataa
gi|13 : gtcactaATACAGTA-AATC------TACCA-GAATC-TCCGATA-TATT--TTTG-AACAGAGGAAAAA------A--Ttgacaatcgatattaggtaacggagtag
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TCAATTATAGTAACTAATACTATAAGTTGCGAATATTGAATTATATTGTGTTACTATTTTAGAAGAATATTATAGTAATACAGTTCTCTCAGTAAGGTAATTTGGAGTATAATATAAATCATGACTTGCACTAGGATAGTCATTAACAAGTTAAACACATCTACCATGAATCTTAACCAGAATTTTTTTGAACAGAAGGAAAAAAATCCTTGAGTGAGAGTTCATAA
Unaligned ( gi|12 ): GAACATATTTTAATTGTATAGAAAACATTAAAAAAGGTTTTGACACAAGCTTGCTTACAACTTAGAGGTTATCAACTCTAG
Unaligned ( gi|14 ): TTTAAAACAACTGTCAATATATACCCCTAAATCTACAATTATGTAGACTCTAATATTGAGTTA
Unaligned ( gi|16 ): GGTTTGAACACAAGTTACGGGGATCTCGCCTA
Alignments
lowQualScore : 11111 1111111 11111111 1111111 111 11111 3333333333333333333333333333333 111111 111 22222 1111 1
lowQualScore : 11111 3 666 55 55 3 6 3333333 4 4 55 3 8 4 11111111 6 1111111 3 666 77777 2 3 33333 4444444444444444444444444444444 88 4 55 55 3 7777 000000 7 3 666 777 55 3 3 222 5 0 55555 5 22 7777 1 0
lowQualScore : ..... . ... .. .. . . ....... . . .. . . . ........ . ....... . ... ..... . . ..... ............................... .. . .. .. . .... ...... . . ... ... .. . . ... . . ..... . .. .... . .
lowQualScore : 33333 6 444 00 00 6 4 0000000 0 0 00 6 4 5 77777777 5 8888888 6 444 33333 5 6 77777 4444444444444444444444444444444 11 0 00 00 6 7777 555555 3 6 444 444 00 6 6 555 9 2 66666 7 00 9999 7 0
consensus : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTA-A------GTAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAT---A-----CA---T-------G------G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TCTAC------CA-GAATC-T---CCGATATA-CT--TTTG-AACAG-AGGAAAAAA---TNAGTTGATTTACA--TNATCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
Reference ( family-1903 ) : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTA-A------GTAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAT---A-----CA---T-------G------G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TCTAC------CA-GAATC-T---CCGATANA-CT--TTTG-AACAG-AGGAAAAAA---TNAGTTGATTTACA--CGATCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
gi|1 : AA-GTAG---GCA--A--GTATA-TTCTGTAGT-------TATC-ATT--A--ACAGAGAA-TA---------TGAATGTA-------CATTA---TCA---AAGGTCATTTGATA---TAAA---G-----CA---TCGGTTCCG------G-TGTTCATG-TAGTCAA--ACA---TACAA----ACTTC------CA-GAA---T---CCGATATATCTAGTTTGAAACAG-AGAAAAAAAACGTTA--TAAGTTACAT-CCATC-CAT-TTACATTTAAACATCTC
gi|10 : gagtatatttctgttgataatacacatgtataagcaaaagttttgaatcacaattcttcaacttacggttctcaaatatacatgtaaaacgaaccgtcgaatttacattcttacatttgctagataCAACTGTCAATATA--T--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCTTCGT-------TA-C-ATC--A-GATAGGAAAATA-A------ATAGATATA-------CAT-G---T-ATTAAAGGTCATTCGA-A---TAATT--A-----CA---T-------G------G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TCTAC------CA-GAATC-T---CTGATAAA-CT--TTTG-CATAG-AGGAAAAAA---TAAGTTGgtacaataa
gi|11 : TATA--C--CAATTACTATA--TTAA---GCA--T--G-ATAATTTCTTAGT-------TA-C-AAT--A-AATAGAAAACTA-A------GTAAATATA-------CAT-GTAAT-A---AAGGCCATTTGA-A---TAAT---G-----CA---T-------G------
gi|13 : cAT--ACAG--TA-AA----TCTAC------CA-GAATC-T---CCGATATA-TT--TTTG-AACAG-AGGAAAAAA---Ta
gi|15 : CAACTGTCAATATA--C--TAATTTCTATAA-GTAG---ACA--T--G-ATAATccttggtgagtctcatca
gi|2 : aaCAACTGTCAATATA--TATTAATTACTATAA-GTAG---ACA--T--G-ATAATTT-GTAATTACATTGTA-C-ATT--A-GAAAGAAAACTA-AGTGATGGTAAATAT----------T-G---C-C---AATAT-AT---------TAAT---A-----TA---T-------G------GATGT-GAGG--AGTCAT--ACAG--TA-AA----TCTAC------CA-GAATC-T---CTGAT-TA-CT--TTTG-AACAG-AGG--AAAA---TTAGTTGATTTACA--TCATCATGT-TTAGATT----CATCTC
gi|3 : aaCAACTGTCAATATA--T--TAATTACTATAAGGTAG---ACAATC--G-ATA--TTTGCAGT-------TA-C-ATT--AGGAAAGAAAACT--A------GT-AATAC--------CAT-G---T-G---ATGGTAATTTGG-AT--TAATATAA-----TA---T-------G------A-TGT-AGAG-TAGTCCT--AAGG--TA-AA----TC-AC------CAGGAATCTT---CCGATA-A-C---TTTG-AACAG-AGGAAAAAAAT-TGAGTTGATTTACAATCGTTCATGT-TTGGATTC---CATCTCCC-CATAACAATAAAtgttgatggggatattacaataaaggcgaggaatgttattttcgcgaatgg
gi|4 : acGTCAATATATAC--TAATTACAATAA-GTAG---ACA--T--G-ATAATATTGTAGT-------TA-C-ATT--A-GAAAGAAAAGAA-A------GTAA-TACA-------CAT-G---T-G---ATGGTAATTTGA-T---TAAT---A-----TAATAT-------G------G-TGT-GAGG-TAGTCAT--ACAG---A-AA----TCTAC------CA-GAATC-T---CCGATATA-CT--TTTG-AACAG-AGGAAAAAA---TTAGTTGATTTAC-------CATATATTGTATT----tgacatcgatatatcaggtatctgagta
gi|5 : CAACTGTCAATACA--C--TAAATACTATAA-GTAG---ACA--T--G-ATAATTTCATAGT-------TA-C-ATT--A-GATAGAAAAATA-A------ATAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAC---A-----CA---T-------G------A-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TCTAC------CA-AAATC-T---CTGATAAA-CT--CTTG-AACGG-AGGAAAAAA---TGAGTTGATTTATA--TAATCATAT-TGAGATT----CATCTCCC-CATAAAAATAAAAATggacacccatcccaaacaactgaagcgtattcaagcaatggtcttataa
gi|6 : CAATTAT-AGTA-A--C--TAAT-ACTATAA-GTTGCGAATA--TTGA-ATTATATTGT-GT-------TA-CTATTTTA-GA-AGAATATTATA------GTAA-TACAGTTCTCTCA--G---T-A---A-GGTAATTTGG-AGTATAAT---ATAAATCA---T-------GACTT--G-CAC-TAGGATAGTCATTAACAAGTTA-AACACATCTAC------CATGAATC-TTAACCAGAATT-TT--TTTG-AACAGAAGGAAAAAA---ggggagtatttttgagtat
gi|7 : tCATCTGTTATTATA--C--TAATTATTATGA-CTAG---ACA--T--G-ATAATTTCTTAGG-------TA-C-ATT--A-AATAGAAAAATA-A------ATATACATA-------CTT-GTATT-A---AAGGTCATT-------------------------------------------TGT-C----TGGCCAT--ACAG--TA-AA----TCT----------------------------A-CT--TTTG-AACCG-ATG-AAACA---TAAGATGGTTTATA--TCATCATGT-TTCTATC----C--CTCCCGCCTAAAAGTGACAATatccttgagtgagagttcataa
gi|8 : aT--A-AGTAGAGAAA-A-C------ATAACTATA-------CAT-G---T-A---AAAGTCGTTTGG-A---TAAT---A-----CA---T-------GTACATGG-TGT-CAGG-TAGTCAT--GGAG--TA-AA----CCTACATGTACCA-GAATC-T---CTGATAAC-CT--TTTG-AAC---AGGAAAAAA---T----------------GATCATGT-TTTAATT----CGTCTTCC-AATAAAAGTAAAcaataatatgaaactgagtgaaa
gi|9 : gtcactaTGTCAATATATAC--TAATTACTATAA-GTGA---ATA--T--G-ATAATTT-GTAGT-------TA-C-ATT--A-GA-AGAAAACTA-A------GTAA-TACA-------CAT-GG--T-G---ATGGTAATTTGA-T---TAAT---A-----TAAA-T-------G------A-TGG--AGG-TAGTCAT--ACAG--TA-AA----TCTAC------CA-GAATC-T---CCGATATT-AT--TTTG-AACAG-AGGAAAAAtgacaatcgatattaggtaacggagtag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GAACATATTTTAATTGTATAGAAAACATTAAAAAAGGTTTTGACACAAGCTTGCTTACAACTTAGAGGTTATCAACTCTAG
Unaligned ( gi|14 ): TTTAAAACAACTGTCAATATATACCCCTAAATCTACAATTATGTAGACTCTAATATTGAGTTA
Unaligned ( gi|16 ): GGTTTGAACACAAGTTACGGGGATCTCGCCTA
Alignments
lowQualScore : 11111 1111111 11111111 1111111 111 11111 33333333333333333333333333333333 111111 111 1111 1111 1
lowQualScore : 11111 3 666 55 55 3 6 3333333 4 4 55 3 8 4 11111111 6 1111111 3 666 77777 2 3 33333 44444444444444444444444444444444 88 4 55 55 3 7777 000000 7 77777 444 55 3 3 222 2 0 5 1111 5 22 7777 1 0
lowQualScore : ..... . ... .. .. . . ....... . . .. . . . ........ . ....... . ... ..... . . ..... ................................ .. . .. .. . .... ...... . ..... ... .. . . ... . . . .... . .. .... . .
lowQualScore : 33333 6 444 00 00 6 4 0000000 0 0 00 6 4 5 77777777 5 8888888 6 444 33333 5 6 77777 44444444444444444444444444444444 11 0 00 00 6 7777 555555 3 66666 111 00 6 6 555 8 2 7 0000 7 00 9999 7 0
consensus : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTA-A------GTAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAT---A-----CA------T-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TNAGTTGATTTAC-AT-CA-TCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
Reference ( family-1903 ) : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTA-A------GTAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAT---A-----CA------T-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TNAGTTGATTTAC-AT-NA-TCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
gi|1 : AA-GTAG---GCA--A--GTATA-TTCTGTAGT-------TATC-ATT--A--ACAGAGAA-TA---------TGAATGTA-------CATTA---TCA---AAGGTCATTTGATA---TAAA---G-----CA------TCGGTTCCG----G-TGTTCATG-TAGTCAA--ACA---TACAA----AC------TTCCA-GAATC------CGATATATCTAGTTTGAAACAG-AGAAAAAAAACGTTA--TAAGTTAC-ATCCA-TC-CAT-TTACATTTAAACATCTC
gi|10 : gagtatatttctgttgataatacacatgtataagcaaaagttttgaatcacaattcttcaacttacggttctcaaatatacatgtaaaacgaaccgtcgaatttacattcttacatttgctagataCAACTGTCAATATA--T--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCTTCGT-------TA-C-ATC--A-GATAGGAAAATA-A------ATAGATATA-------CAT-G---T-ATTAAAGGTCATTCGA-A---TAATT--A-----CA------T-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CTGATAAA-CT--TTTGCA-TAG-AGGAAAAAA---TAAGTTGgtacaataa
gi|11 : TATA--C--CAATTACTATA--TTAA---GCA--T--G-ATAATTTCTTAGT-------TA-C-AAT--A-AATAGAAAACTA-A------GTAAATATA-------CAT-GTAAT-A---AAGGCCATTTGA-A---TAAT---G-----CA------T-------G----
gi|13 : cAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-TT--TTTGAA-CAG-AGGAAAAAA---Ta
gi|15 : CAACTGTCAATATA--C--TAATTTCTATAA-GTAG---ACA--T--G-ATAATccttggtgagtctcatca
gi|2 : aaCAACTGTCAATATA--TATTAATTACTATAA-GTAG---ACA--T--G-ATAATTT-GTAATTACATTGTA-C-ATT--A-GAAAGAAAACTA-AGTGATGGTAAATAT----------T-G---C-C---AATAT-AT---------TAAT---A-----TA------T-------G----GATGT-GAGG--AGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CTGAT-TA-CT--TTTGAA-CAG-AGG--AAAA---TTAGTTGATTTAC-AT-CA-TCATGT-TTAGATT----CATCTC
gi|3 : aaCAACTGTCAATATA--T--TAATTACTATAAGGTAG---ACAATC--G-ATA--TTTGCAGT-------TA-C-ATT--AGGAAAGAAAACT--A------GT-AATAC--------CAT-G---T-G---ATGGTAATTTGG-AT--TAATATAA-----TA------T-------G----A-TGT-AGAG-TAGTCCT--AAGG--TA-AA----TC-------ACCAGGAATCTT---CCGATA-A-C---TTTGAA-CAG-AGGAAAAAAAT-TGAGTTGATTTACAAT-CGTTCATGT-TTGGATTC---CATCTCCC-CATAACAATAAAtgttgatggggatattacaataaaggcgaggaatgttattttcgcgaatgg
gi|4 : acGTCAATATATAC--TAATTACAATAA-GTAG---ACA--T--G-ATAATATTGTAGT-------TA-C-ATT--A-GAAAGAAAAGAA-A------GTAA-TACA-------CAT-G---T-G---ATGGTAATTTGA-T---TAAT---A-----TAATA---T-------G----G-TGT-GAGG-TAGTCAT--ACAG---A-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TTAGTTGATTTAC--------CATATATTGTATT----tgacatcgatatatcaggtatctgagta
gi|5 : CAACTGTCAATACA--C--TAAATACTATAA-GTAG---ACA--T--G-ATAATTTCATAGT-------TA-C-ATT--A-GATAGAAAAATA-A------ATAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAC---A-----CA------T-------G----A-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-AAATC-T---CTGATAAA-CT--CTTGAA-CGG-AGGAAAAAA---TGAGTTGATTTAT-AT-AA-TCATAT-TGAGATT----CATCTCCC-CATAAAAATAAAAATggacacccatcccaaacaactgaagcgtattcaagcaatggtcttataa
gi|6 : CAATTAT-AGTA-A--C--TAAT-ACTATAA-GTTGCGAATA--TTGA-ATTATATTGT-GT-------TA-CTATTTTA-GA-AGAATATTATA------GTAA-TACAGTTCTCTCA--G---T-A---A-GGTAATTTGG-AGTATAAT---ATAAATCA------T-------GACTTG-CAC-TAGGATAGTCATTAACAAGTTA-AACACATC------TACCATGAATC-TTAACCAGAATT-TT--TTTGAA-CAGAAGGAAAAAA---ggggagtatttttgagtat
gi|7 : tCATCTGTTATTATA--C--TAATTATTATGA-CTAG---ACA--T--G-ATAATTTCTTAGG-------TA-C-ATT--A-AATAGAAAAATA-A------ATATACATA-------CTT-GTATT-A---AAGGTCATT--------------------------------------------TGT-C----TGGCCAT--ACAG--TA-AA----TC----------------------------TA-CT--TTTGAA-CCG-ATG-AAACA---TAAGATGGTTTAT-AT-CA-TCATGT-TTCTATC----C--CTCCCGCCTAAAAGTGACAATatccttgagtgagagttcataa
gi|8 : aT--A-AGTAGAGAAA-A-C------ATAACTATA-------CAT-G---T-A---AAAGTCGTTTGG-A---TAAT---A-----CATGTACAT-------G----G-TGT-CAGG-TAGTCAT--GGAG--TA-AA----CCTACATGTACCA-GAATC-T---CTGATAAC-CT--TTTGAA-C---AGGAAAAA------------------AT-GA-TCATGT-TTTAATT----CGTCTTCC-AATAAAAGTAAAcaataatatgaaactgagtgaaa
gi|9 : gtcactaTGTCAATATATAC--TAATTACTATAA-GTGA---ATA--T--G-ATAATTT-GTAGT-------TA-C-ATT--A-GA-AGAAAACTA-A------GTAA-TACA-------CAT-GG--T-G---ATGGTAATTTGA-T---TAAT---A-----TAAA----T-------G----A-TGG--AGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATT-AT--TTTGAA-CAG-AGGAAAAAtgacaatcgatattaggtaacggagtag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GAACATATTTTAATTGTATAGAAAACATTAAAAAAGGTTTTGACACAAGCTTGCTTACAACTTAGAGGTTATCAACTCTAG
Unaligned ( gi|14 ): TTTAAAACAACTGTCAATATATACCCCTAAATCTACAATTATGTAGACTCTAATATTGAGTTA
Unaligned ( gi|16 ): GGTTTGAACACAAGTTACGGGGATCTCGCCTA
Alignments
lowQualScore : 11111 1111111 11111111 1111111 111 11111 33333333333333333333333333333333 111111 111 1111111 1111 1
lowQualScore : 11111 3 666 55 55 3 6 3333333 4 4 55 3 8 4 11111111 6 1111111 3 666 77777 2 3 33333 44444444444444444444444444444444 88 4 55 55 3 7777 000000 7 77777 444 55 3 3 222 1 0 3333333 5 22 7777 1 0
lowQualScore : ..... . ... .. .. . . ....... . . .. . . . ........ . ....... . ... ..... . . ..... ................................ .. . .. .. . .... ...... . ..... ... .. . . ... . . ....... . .. .... . .
lowQualScore : 33333 6 444 00 00 6 4 0000000 0 0 00 6 4 5 77777777 5 8888888 6 444 33333 5 6 77777 44444444444444444444444444444444 11 0 00 00 6 7777 555555 3 66666 111 00 6 6 555 0 2 7777777 7 00 9999 7 0
consensus : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTA-A------GTAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAT---A-----CA------T-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TNAGTTGATTTAC-AT-CA-TCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
Reference ( family-1903 ) : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTA-A------GTAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAT---A-----CA------T-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TNAGTTGATTTAC-AT-CA-TCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
gi|1 : AA-GTAG---GCA--A--GTATA-TTCTGTAGT-------TATC-ATT--A--ACAGAGAA-TA---------TGAATGTA-------CATTA---TCA---AAGGTCATTTGATA---TAAA---G-----CA------TCGGTTCCG----G-TGTTCATG-TAGTCAA--ACA---TACAA----AC------TTCCA-GAATC------CGATATATCTAGTTTGAAACAG-AGAAAAAAAACGTTA--TAAGTTAC-ATCCA-TC-CAT-TTACATTTAAACATCTC
gi|10 : gagtatatttctgttgataatacacatgtataagcaaaagttttgaatcacaattcttcaacttacggttctcaaatatacatgtaaaacgaaccgtcgaatttacattcttacatttgctagataCAACTGTCAATATA--T--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCTTCGT-------TA-C-ATC--A-GATAGGAAAATA-A------ATAGATATA-------CAT-G---T-ATTAAAGGTCATTCGA-A---TAATT--A-----CA------T-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CTGATAAA-CT--TTTGCA-TAG-AGGAAAAAA---TAAGTTGgtacaataa
gi|11 : TATA--C--CAATTACTATA--TTAA---GCA--T--G-ATAATTTCTTAGT-------TA-C-AAT--A-AATAGAAAACTA-A------GTAAATATA-------CAT-GTAAT-A---AAGGCCATTTGA-A---TAAT---G-----CA------T-------G----
gi|13 : cAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-TT--TTTGAA-CAG-AGGAAAAAA---Ta
gi|15 : CAACTGTCAATATA--C--TAATTTCTATAA-GTAG---ACA--T--G-ATAATccttggtgagtctcatca
gi|2 : aaCAACTGTCAATATA--TATTAATTACTATAA-GTAG---ACA--T--G-ATAATTT-GTAATTACATTGTA-C-ATT--A-GAAAGAAAACTA-AGTGATGGTAAATAT----------T-G---C-C---AATAT-AT---------TAAT---A-----TA------T-------G----GATGT-GAGG--AGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CTGAT-TA-CT--TTTGAA-CAG-AGG--AAAA---TTAGTTGATTTAC-AT-CA-TCATGT-TTAGATT----CATCTC
gi|3 : aaCAACTGTCAATATA--T--TAATTACTATAAGGTAG---ACAATC--G-ATA--TTTGCAGT-------TA-C-ATT--AGGAAAGAAAACT--A------GT-AATAC--------CAT-G---T-G---ATGGTAATTTGG-AT--TAATATAA-----TA------T-------G----A-TGT-AGAG-TAGTCCT--AAGG--TA-AA----TC-------ACCAGGAATCTT---CCGATA-A-C---TTTGAA-CAG-AGGAAAAAAAT-TGAGTTGATTTACAAT-CGTTCATGT-TTGGATTC---CATCTCCC-CATAACAATAAAtgttgatggggatattacaataaaggcgaggaatgttattttcgcgaatgg
gi|4 : acGTCAATATATAC--TAATTACAATAA-GTAG---ACA--T--G-ATAATATTGTAGT-------TA-C-ATT--A-GAAAGAAAAGAA-A------GTAA-TACA-------CAT-G---T-G---ATGGTAATTTGA-T---TAAT---A-----TAATA---T-------G----G-TGT-GAGG-TAGTCAT--ACAG---A-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TTAGTTGATTTAC--------CATATATTGTATT----tgacatcgatatatcaggtatctgagta
gi|5 : CAACTGTCAATACA--C--TAAATACTATAA-GTAG---ACA--T--G-ATAATTTCATAGT-------TA-C-ATT--A-GATAGAAAAATA-A------ATAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAC---A-----CA------T-------G----A-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-AAATC-T---CTGATAAA-CT--CTTGAA-CGG-AGGAAAAAA---TGAGTTGATTTAT-AT-AA-TCATAT-TGAGATT----CATCTCCC-CATAAAAATAAAAATggacacccatcccaaacaactgaagcgtattcaagcaatggtcttataa
gi|6 : CAATTAT-AGTA-A--C--TAAT-ACTATAA-GTTGCGAATA--TTGA-ATTATATTGT-GT-------TA-CTATTTTA-GA-AGAATATTATA------GTAA-TACAGTTCTCTCA--G---T-A---A-GGTAATTTGG-AGTATAAT---ATAAATCA------T-------GACTTG-CAC-TAGGATAGTCATTAACAAGTTA-AACACATC------TACCATGAATC-TTAACCAGAATT-TT--TTTGAA-CAGAAGGAAAAAA---ggggagtatttttgagtat
gi|7 : tCATCTGTTATTATA--C--TAATTATTATGA-CTAG---ACA--T--G-ATAATTTCTTAGG-------TA-C-ATT--A-AATAGAAAAATA-A------ATATACATA-------CTT-GTATT-A---AAGGTCATT--------------------------------------------TGT-C----TGGCCAT--ACAG--TA-AA----TC----------------------------TA-CT--TTTGAA-CCG-ATG-AAACA---TAAGATGGTTTAT-AT-CA-TCATGT-TTCTATC----C--CTCCCGCCTAAAAGTGACAATatccttgagtgagagttcataa
gi|8 : aT--A-AGTAGAGAAA-A-C------ATAACTATA-------CAT-G---T-A---AAAGTCGTTTGG-A---TAAT---A-----CATGTACAT-------G----G-TGT-CAGG-TAGTCAT--GGAG--TA-AA----CCTACATGTACCA-GAATC-T---CTGATAAC-CT--TTTGAA-C---AGGAAAAAA---TG----------------A-TCATGT-TTTAATT----CGTCTTCC-AATAAAAGTAAAcaataatatgaaactgagtgaaa
gi|9 : gtcactaTGTCAATATATAC--TAATTACTATAA-GTGA---ATA--T--G-ATAATTT-GTAGT-------TA-C-ATT--A-GA-AGAAAACTA-A------GTAA-TACA-------CAT-GG--T-G---ATGGTAATTTGA-T---TAAT---A-----TAAA----T-------G----A-TGG--AGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATT-AT--TTTGAA-CAG-AGGAAAAAtgacaatcgatattaggtaacggagtag
blockSeqs : TAT G CGA AT TG . C TACATTG . T TT G T A AGTGATG A GTTCTCT . TAA ATTA A C AGTA ATAAATCATGACTTG C A TA GT . CACA TACATG G TTAA AA . . A AT A AATCGT A AG C A G
blockSeqs : TAC . . . . . C . . . . . T C TA A . . TAT A A C AT ACATGTACATGG G . . . . . . T TT TA . . . . T ATCA . GG . A .
blockSeqs : TAC . . . . . T . . . . . A C A A . . G C A A A ATAATATGA A . . . . . . . T TA . . . . G ATAA . GT . A .
blockSeqs : C . . . . . T . . . . . A C A A . . . G T A A ATAATATGG G . . . . . . . T TA . . . . T ATCA . AG . G
blockSeqs : C . . . . . C . . . . . A G A A . . . G T C T ATAAATGA C . . . . . . . T AA . . . . G A . CT . .
blockSeqs : T . . . . . T . . . . . T A A A . . . A A A A TACATGG T . . . . . . . T TT . . . . A . . TA .
blockSeqs : C . . . . . C . . . . . T T A C . . . A A C A ATATGGA C . . . . . . . T TA . . . . G
blockSeqs : C . . . . . . . . . . . T A A . . . . A A C T ACATGA C . . . . . . . T AC . . . .
blockSeqs : C . . . . . . . . . . . . A C . . . . A T A . . . . . . . . . . T TT . . . .
blockSeqs : . . . . . . . . C A . . . . G . . . . . . . . . . A . . .
blockSeqCons : A******* A**** A**** ATAACATGG*********************** C* T**** TA* ** *** ATCA*** ****
originalCons : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTA-A------GTAAATATA-------CAT-G---T-A---AAGGTCATTTGA-A---TAAT---A-----CA------T-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TNAGTTGATTTAC-AT-CA-TCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
finalCons : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTAA-------GTAAATATA-------CAT-G---TA----AAGGTCATTTGAA----TAATATAACATGG-----------------------TGTC-AGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATCT----CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TNAGTTGATTTACATCA---TCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GAACATATTTTAATTGTATAGAAAACATTAAAAAAGGTTTTGACACAAGCTTGCTTACAACTTAGAGGTTATCAACTCTAG
Unaligned ( gi|14 ): TTTAAAACAACTGTCAATATATACCCCTAAATCTACAATTATGTAGACTCTAATATTGAGTTA
Unaligned ( gi|16 ): GGTTTGAACACAAGTTACGGGGATCTCGCCTA
Alignments
lowQualScore : 11111 1111111 11111111 1111111 222 11111 22222222222222222222222222 111111 111 1111111 1111 1
lowQualScore : 11111 3 666 55 55 3 6 3333333 4 4 55 3 8 4 11111111 6 1111111 3 222 3 2 3 33333 66666666666666666666666666 88 4 55 55 3 7777 000000 7 77777 444 55 3 3 222 1 0 3333333 5 22 7777 1 0
lowQualScore : ..... . ... .. .. . . ....... . . .. . . . ........ . ....... . ... . . . ..... .......................... .. . .. .. . .... ...... . ..... ... .. . . ... . . ....... . .. .... . .
lowQualScore : 33333 6 444 00 00 6 4 0000000 0 0 00 6 4 5 77777777 5 8888888 6 777 6 5 6 77777 00000000000000000000000000 11 0 00 00 6 7777 555555 3 66666 111 00 6 6 555 0 2 7777777 7 00 9999 7 0
consensus : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTA-A------GTAAATATA-------CAT-G---T-AAAGGTCATTTGA-A---TAATATA---A--CAT-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TNAGTTGATTTAC-AT-CA-TCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
Reference ( family-1903 ) : CAACTGTCAATATA--C--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCGTAGT-------TA-C-ATT--A-GATAGAAAANTA-A------GTAAATATA-------CAT-G---T-AAAGGTCATTTGA-A---TAATATA---A--CAT-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TNAGTTGATTTAC-AT-CA-TCATGT-TTNNATT----CATCTCCC-CATAAAAGTAAAAAT
gi|1 : AA-GTAG---GCA--A--GTATA-TTCTGTAGT-------TATC-ATT--A--ACAGAGAA-TA---------TGAATGTA-------CATTA---TCAAAGGTCATTTGATA---TAA---A---G--CATCGGTTCCG----G-TGTTCATG-TAGTCAA--ACA---TACAA----AC------TTCCA-GAATC------CGATATATCTAGTTTGAAACAG-AGAAAAAAAACGTTA--TAAGTTAC-ATCCA-TC-CAT-TTACATTTAAACATCTC
gi|10 : gagtatatttctgttgataatacacatgtataagcaaaagttttgaatcacaattcttcaacttacggttctcaaatatacatgtaaaacgaaccgtcgaatttacattcttacatttgctagataCAACTGTCAATATA--T--TAATTACTATAA-GTAG---ACA--T--G-ATAATTTCTTCGT-------TA-C-ATC--A-GATAGGAAAATA-A------ATAGATATA-------CAT-GTATT-AAAGGTCATTCGA-A---TAAT-T----A--CAT-------G----G-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CTGATAAA-CT--TTTGCA-TAG-AGGAAAAAA---TAAGTTGgtacaataa
gi|11 : TATA--C--CAATTACTATA--TTAA---GCA--T--G-ATAATTTCTTAGT-------TA-C-AAT--A-AATAGAAAACTA-A------GTAAATATA-------CAT-GTAAT-AAAGGCCATTTGA-A---TAAT
gi|13 : cAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATA-TT--TTTGAA-CAG-AGGAAAAAA---Tgcatga
gi|15 : CAACTGTCAATATA--C--TAATTTCTATAA-GTAG---ACA--T--G-ATAATccttggtgagtctcatca
gi|2 : aaCAACTGTCAATATA--TATTAATTACTATAA-GTAG---ACA--T--G-ATAATTT-GTAATTACATTGTA-C-ATT--A-GAAAGAAAACTA-AGTGATGGTAAATAT----------T-G---C-CAATAT-AT---------TAATAT--------AT-------G----GATGT-GAGG--AGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CTGAT-TA-CT--TTTGAA-CAG-AGG--AAAA---TTAGTTGATTTAC-AT-CA-TCATGT-TTAGATT----CATCTC
gi|3 : aaCAACTGTCAATATA--T--TAATTACTATAAGGTAG---ACAATC--G-ATA--TTTGCAGT-------TA-C-ATT--AGGAAAGAAAACT--A------GT-AATAC--------CAT-G---T-GATGGTAATTTGG-AT--TAATATA---A--TAT-------G----A-TGT-AGAG-TAGTCCT--AAGG--TA-AA----TC-------ACCAGGAATCTT---CCGATA-A-C---TTTGAA-CAG-AGGAAAAAAAT-TGAGTTGATTTACAAT-CGTTCATGT-TTGGATTC---CATCTCCC-CATAACAATAAAtgttgatggggatattacaataaaggcgaggaatgttattttcgcgaatgg
gi|4 : acGTCAATATATAC--TAATTACAATAA-GTAG---ACA--T--G-ATAATATTGTAGT-------TA-C-ATT--A-GAAAGAAAAGAA-A------GTAA-TACA-------CAT-G---T-GATGGTAATTTGA-T---TAATATA---A--TAT-------G----G-TGT-GAGG-TAGTCAT--ACAG---A-AA----TC------TACCA-GAATC-T---CCGATATA-CT--TTTGAA-CAG-AGGAAAAAA---TTAGTTGATTTAC--------CATATATTGTATT----tgacatcgatatatcaggtatctgagta
gi|5 : CAACTGTCAATACA--C--TAAATACTATAA-GTAG---ACA--T--G-ATAATTTCATAGT-------TA-C-ATT--A-GATAGAAAAATA-A------ATAAATATA-------CAT-G---T-AAAGGTCATTTGA-A---TAACA--------CAT-------G----A-TGT-CAGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-AAATC-T---CTGATAAA-CT--CTTGAA-CGG-AGGAAAAAA---TGAGTTGATTTAT-AT-AA-TCATAT-TGAGATT----CATCTCCC-CATAAAAATAAAAATggacacccatcccaaacaactgaagcgtattcaagcaatggtcttataa
gi|6 : CAATTAT-AGTA-A--C--TAAT-ACTATAA-GTTGCGAATA--TTGA-ATTATATTGT-GT-------TA-CTATTTTA-GA-AGAATATTATA------GTAA-TACAGTTCTCTCA--G---T-AA-GGTAATTTGG-AGTATAATATA---AATCAT-------GACTTG-CAC-TAGGATAGTCATTAACAAGTTA-AACACATC------TACCATGAATC-TTAACCAGAATT-TT--TTTGAA-CAGAAGGAAAAAA---ggggagtatttttgagtat
gi|7 : tCATCTGTTATTATA--C--TAATTATTATGA-CTAG---ACA--T--G-ATAATTTCTTAGG-------TA-C-ATT--A-AATAGAAAAATA-A------ATATACATA-------CTT-GTATT-AAAGGTCATT--------------------------------------TGT-C----TGGCCAT--ACAG--TA-AA----TC----------------------------TA-CT--TTTGAA-CCG-ATG-AAACA---TAAGATGGTTTAT-AT-CA-TCATGT-TTCTATC----C--CTCCCGCCTAAAAGTGACAATatccttgagtgagagttcataa
gi|8 : aT--A-AGTAGAGAAA-A-C------ATAACTATA-------CAT-G---T-AAAAGTCGTTTGG-A---TAATACATGTA--CAT-------G----G-TGT-CAGG-TAGTCAT--GGAG--TA-AA----CCTACATGTACCA-GAATC-T---CTGATAAC-CT--TTTGAA-C---AGGAAAAAA---TG----------------A-TCATGT-TTTAATT----CGTCTTCC-AATAAAAGTAAAcaataatatgaaactgagtgaaa
gi|9 : gtcactaTGTCAATATATAC--TAATTACTATAA-GTGA---ATA--T--G-ATAATTT-GTAGT-------TA-C-ATT--A-GA-AGAAAACTA-A------GTAA-TACA-------CAT-GG--T-GATGGTAATTTGA-T---TAATATA---A---AT-------G----A-TGG--AGG-TAGTCAT--ACAG--TA-AA----TC------TACCA-GAATC-T---CCGATATT-AT--TTTGAA-CAG-AGGAAAAAtgacaatcgatattaggtaacggagtag
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): GAACATATTTTAATTGTATAGAAAACATTAAAAAAGGTTTTGACACAAGCTTGCTTACAACTTAGAGGTTATCAACTCTAG
Unaligned ( gi|14 ): TTTAAAACAACTGTCAATATATACCCCTAAATCTACAATTATGTAGACTCTAATATTGAGTTA
Unaligned ( gi|16 ): GGTTTGAACACAAGTTACGGGGATCTCGCCTA