lowQualScore : 1 11111 111 11 11 11 111 2222 11 111111 1111 11111 1 333333333333333333
lowQualScore : 5 5 5 66 2 5 888 44444 5 0 666 00 4 8888 4 777 22 4 8 4 7 3 44 00 3 222 3 55 2222 44 2 22 777777 7777 7 77 3 3 4444 44 77777 55 3 3 55 7 44 4 5 1 3 99 777777777777777777 6 99 1
lowQualScore : . . . .. . . ... ..... . . ... .. . .... . ... .. . . . . . .. .. . ... . .. .... .. . .. ...... .... . .. . . .... .. ..... .. . . .. . .. . . . . .. .................. . .. .
lowQualScore : 0 0 0 99 8 0 222 44444 7 7 444 55 0 5555 0 000 44 0 0 0 5 3 66 88 3 222 3 00 4444 22 2 33 222222 7777 3 99 3 3 1111 66 22222 00 6 6 00 2 66 0 0 7 5 22 222222222222222222 7 22 0
consensus : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCCC--AAAATGTACCCTGGAACATTG-CTTGGTGCT-CA----A-TATAT---TCTTCCC-AC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-G--TCC-TAAAC-CCT---TTGC--TCCGAGGGGACACAACCAGAAAGAAAAA--N---AACT----AACTACCAT-AAA--A-TA-C-ACAAAG--CTGCCACTTTGCGATG---TCTATCATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCG-CCC--------CCC-------AAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
Reference ( gi|3 ) : TATGCAAAT-TGTTGC-ATATAC--ACACAAATCAAG-TTC--TGTTCTGG-ACA-CTAAGGGTCATCCT--AAAATGTACCCTGGAACATTA-CTTGGTGCT-CA----A-TATAT---TCTTTTC-AC-AT-TAAAGCAAGAAACAG-GCAA--A-CAAT-G--CCC-TAAAC-CCA---TTGC--TCCGAGAGGACACAACCAGAAAGAAAAA--A---AACT----AACTACCAT-AAA--A-TA-C-ACTAAG--CTGCCACTTTGCGATG---TATATCATA--T-C-AAATTGGT--CTACCTT--TGGA-TAGC-ACAACAAAATGGTATTAGTGGGAATTTG-CCC--------CCA-------AAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATATA
gi|5 : TATGCAAAA-TTTTGC-ATATAC--ACACACATCAAG-TTT--TGTT-------------------------AAAGTGTACTCTGGAACATTG-CTTGGTGTT-CA----A-TATAT---TCCTCCC-AC-AT-TAAAGCAAGGATTAG-GCCA--A-TAAT-G--TCC-AAAAA-CCT---TTGT--TCCGAGGGGACACAACCAGAA--AAAAA--C---AACT----AACTACCAT-AAA--A-TA-C-AC-AAG--CTGCCACTTTGCGATG---TCTATCATA--T-CAAAATTGGT--CTACCCT--TGGG-TAGC-ACAACAAAATGGTATTTTTGGCAATTTGCCCC--------CCACCCCTCCAGAGTGATATCGAA-CAACCTAT--CTGACTCATGGACTAT
gi|4 : ATGTAAAT-TTATGC-ATATAG--ACACAAATCAAG-TTA--TGTTTTGA-ACA-CTAAGGGTCAACCC--AAAATGTACCTTGGAACATTG-CTTGGTGCT-CA----A-GATAT---TCTTTCCCAC-GT-TACAGTAAGAAATAG-GCAA--A-TAAT-G--ACC-TAAAG-CTT---TTGC--TCCGCGAAGTCACAACC-TATAGAAAA---A---AACT----AACTACCAT-AAA--A-TA-C-ATAAAG--CTGCCACTTTGCGATG---CCTGTCATA--T-C-AAACTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTTG-CCC--------CCC-------AAAGTGGTACCGAC-CAACCTAT--CTGGCTCATGGACTA
gi|8 : ATGCAAAT-GTTTGC-ATATAC--ACACAAACCAAG-TTC--TTTTTTGA-ACA-CTAAGGGCCATCCC--AAAATGTACCCTGGAACATTG-CTTGGTGCT-CA----A-TATTT---TCTTCCC-AC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-G--TCC-TAAAC-CCT---TTGC--TCCGAAAGGACACAACCAGACAAAAATA--ACC-AACT----AACTAGCATAAAA--A-TA-C-ATAAAG--TTGCCATTTTCCGATG---TCTATCATA--T-C-AAATTGGT--CAACTCT--TGGA-TAGT-ACa
gi|18 : TGCAATG-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTT
gi|1 : gttttGCAAAT-TTTTCC-ATATAC--ACACAAATCAGG-TTC--TATTATGA-ACA-CTAAGGGTCATCCC--AAAATGTACCCTGGAACATTT-CTTGGTGCT-AA----A-TATAT---TCTTCCC-AC-AT-TAAAGCAAGAAAAAG-GCAA--A-C-AT-G--TCC-TAACC-CCT---TTGC--TCTGAGGGGACACNA--AAAAGGCAAAA--A---
gi|6 : CAAAT-TTTTGCGATATATTAACACAAA-CAAG-TT---TGTTTTTG-ACA-CTAAAG--CATCCC--AA--TG-ACCCTGGAAC--TAGCTT--TACT-CA----A-TATAT---TCTCT-C-ACGAT-TAAAGCAAGA--TAT-GCAA--AATAAT-G--TCC--AAAC-CT----TTGC--TCCGAGA--------CCAGAAAAAAAAA--ACCCAACT----AATTAGCAT-AAATAA-TA------AAG--CTGCCACTTTGCGATG-----TCTTATA--TAC-AAATTGGT--CTACT------GA-TAGT-ACAAC-AAATGGTTCTAGTGACAATCCC-CCC--------CCC-------AAAG-GGTATCGAATCAACCTATTCTTGCCTCATGGACTATtgtcctaacccctttgctctgaggggacacaactaaaaaaacaacaacaaataaccataaaatacacaaagctgccactttgcgatgtctatcatatcaaattggtctacccttggatagcacaacaagatggtattagtagcaatttgtcccctaaagtggtaccgaacaatcaatctggctcatggactaatt
gi|7 : tgcCAAATGTTTTGC-ATATAC--ACACAAACCAAGATTCCCTGTTTTGACACAACTAAGGGTCATCCGCAAAAATGTATTCTGGATCATTG-CTTGGTGCC-CA----A-TATATACGTCTTCCC-ACAATGTGAAGAAGGAAATAGTGCAACCA-TAAT-G--TCC-AAACC-CCT---TTGCAATCCGAGAGGACACAACCAGAA--AAAAA--A---AACT----AG----GAT-AAAC-ATTA-CAACTAAAGTCTGCCATTTCG-AATGTTCTATAT-ATAAGT-C-AAATTGTTCACTACCCT--GGCAGTAGTAACAACAAGAT
gi|2 : AAT-TTTTGC-ATA--C--ACATAAATCAAG-TTC--TGTTTTGA-ACA-CTAAAGGTAATCCC--AAAATGTACCCCGGAACATTG-CTCGGTGCT-CAATATA-TATAT---TCTTCCC-AC-AT-TAAAGCAAGGAATAG-GCAA--A-TAATAG--TCTATAAAC-TCT---TTGT--TCCAAGGGGACACAACCAGAAAAAAACC--C---AACT----AATTAGCATAAAA--A-TA-C-ACTGAT--CTGCCACTTTGCGATG---TCTGTTATA--T-----ATTGGT--CTACCTT--TG
gi|16 : CCGGAACATTG-CTTGGTGCT-CA----AATATAT---TCTTCCC-AC-GT-TAAAGCAAGGAATGG-GCAA--A-TAAT-GTACCC-Ttggttagactcaaacatttatacatgttttcctcataatgtgtcacaatctgttagaaaataggtattacatgcacattcaataacaa
gi|9 : GGTGCTTCA----A-TAAAT---TCCTCCG-AC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-G--GCC-TAAA----AAGTTTGC--TCCGAGGAGACACAACC----AGAAAAA--A---AACTATTAAACTACCAT-ATA--A-TA-C-TCACAT--CTGCCACTTTGCGATG---TCTATCATA--T-C-AAATTAGT--ATACCCTTATGGC-TAGt
gi|13 : -CA----A-GATAT---TCTTCCC-AC-AT-TACAGCAAGGCATAG-GCAA--A-TGAT-G--GCC-T-------------GC--TCTGCATTGACACAACCAGTA-GAAAAA--C---AACT----AACTACCAT-AAA--A-TA-C-GTAAAG--CTGCCATTTTGCAATG---TCTATCAaattaaatatttatgcacgttttcttcaaaatgtgccacgatctgatattacatatatacatgtattt
gi|17 : GCAAGGAATGG-GCAA--A-TAAT-G--GCC-TAAACTCTT---TTGT--TTCAAGGGTAC
gi|1 : CACNAAAAAG-GCAA--A--AAT-G--TCC-TAACC-CCT---TTGC--TCTGAGGGGACACAACTAAAAA-AACAA--C---AACA----AATAACCAT-AAA--A-TA-C-ACAAAG--CTGCCACTTTGCGATG---TCTATCATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTAGCAATTTG-TCC--------CCT-------AAAGTGGTACCGAA-CAATCAAT--CTGGCTCATGGACTA
gi|11 : gcaaatttttccatatacacacaaatcaggttctattatgaacactaagggtcatcccaaaatgtaccctggaacatttcttggtgctaaatatattcttcccacattaaagcaagaaaaaggcaaacatgtcctaacccctttgctctgagggga---TTGT--TCCGAGGGGACACAACCAGAAA-AAAAC--G---AACT----AGCTACCAT-AAA--A-TATC-A--AAG--CTGTC----------------TATCATA--T-C-AAATTGAC--CTACCGT--T--A-TAGatt
gi|10 : GC--TCCGAGGGGACACAACTAGAAAAAAAAATCC---AACT----AACTACCAT-AAA--A-TA-C-CCAACG--CTGCTACTTTGAGATG---TCTATCACA--T-C-AAATTGAT--CTACCCT--TGGA-TAGC----ACAAGATGGTATTAGTGGCAATCC--CCC--------CCC-------CAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATAttagaatcaaacatttatgcatgctttcctcaaaacgtgccacaatctgatagaaaataaggattacatgca
gi|12 : A--A-TA-C-ACTAAG--TTGCTACTATGCGATG---TCTATCTTA--T-C--AATTGGT--CTACCTT--TG
gi|14 : T--TGGA-TAGT-ACAACAAGATGGTATTAGTGGAAATTTG-CCCCCTCCCCTCCC-------AGAGTGGTACCGAA-CAAC----------CTCATAGTCTATAtggttagaatcgctgtttttcctcaaaattgtgccacaattgcctattattgtctacttgtgctatgactatataatgttaagta
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): AGTGCATATAAGAGCATTGCCCCCCGAAGTGTACCGATGGGTCCAAGATTTTGCCTCACTTGGCTCATAGACTAATA
Alignments
lowQualScore : 11111 33333333333333333
lowQualScore : 4 4 66 4 666 2 5 5 5 5 3 7777 3 666 3 7 3 3 44 3 3 33 3 0 33 3 9 3 66666 3 6 3 3 44 0 3 3 3 44 3 3 44 0 44 3 4 0 22 11111111111111111 5 77
lowQualScore : . . .. . ... . . . . . . .... . ... . . . . .. . . .. . . .. . . . ..... . . . . .. . . . . .. . . .. . .. . . . .. ................. . ..
lowQualScore : 4 4 11 4 222 2 0 0 0 0 6 7777 6 444 6 3 6 1 22 1 1 77 1 2 99 1 6 1 11111 3 7 1 1 22 8 1 1 1 66 3 3 66 2 22 6 4 2 11 44444444444444444 7 99
consensus : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAAC---AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
Reference ( family-1882 ) : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAAN---AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
gi|1 : GCAAAT-TTTTCC-ATATAC--ACACAAATCAGG-TTC--TATTATGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTTCTTGGTGCT-AA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGAAAAAG-GCAA--A-C-AT-GTCC-TAACC-CCTTTGC--TCTGAGGGGACACNA--AAA-AGGCA-AAA
gi|1 : AAAAG-GCAA--A--AAT-GTCC-TAACC-CCTTTGC--TCTGAGGGGACACAACTAAA-AA-AA-CAAC---AACA-AATAACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTAGCAATTTGTCC--------C--------CTAAAGTGGTACCGAA-CAATCAAT--CTGGCTCATGGACTAatgtcctaacccctttgctctgaggggacacaactaaaaaaacaacaacaaataaccataaaatacacaaagctgccactttgcgatgtctatcatatcaaattggtctacccttggatagcacaacaagatggtattagtagcaatttgtcccctaaagtggtaccgaacaatcaatctggctcatggactaatt
gi|10 : gcaaatttttccatatacacacaaatcaggttctattatgaacactaagggtcatcccaaaatgtaccctggaacatttcttggtgctaaatatattcttcccacattaaagcaagaaaaaggcaaacatgtcctaacccctttgctctgaggggacacnaGC--TCCGAGGGGACACAACTAGA-AAAAA-AAATCC-AACT-AACTACCAT-AAA-A-TACC--CAACG-CTGCTACTTTGAGATG-TCTAT-CACA--T-C-AAATTGAT--CTACCCT--TGGA-TAGC----ACAAGATGGTATTAGTGGCAATCC-CCC--------C--------CCCAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATAatt
gi|11 : TTGT--TCCGAGGGGACACAACCAGA-AA-AA-AACG---AACT-AGCTACCAT-AAA-A-TAT---CAAAG-C-------------TG-TCTAT-CATA--T-C-AAATTGAC--CTACCGT--T--A-TAG
gi|12 : A-A-TACA--CTAAG-TTGCTACTATGCGATG-TCTAT-CTTA--T-C--AATTGGT--CTACCTT--TGttagaatcaaacatttatgcatgctttcctcaaaacgtgccacaatctgatagaaaataaggattacatgca
gi|13 : -CA----A-GATAT---TCTT-CCCAC-AT-TACAGCAAGGCATAG-GCAA--A-TGAT-GGCC-T----------GC--TCTGCATTGACACAACCAGT-A-GAA-AAAC---AACT-AACTACCAT-AAA-A-TACG--TAAAG-CTGCCATTTTGCAATG-TCTAT-CAtggttagaatcgctgtttttcctcaaaattgtgccacaattgcctattattgtctacttgtgctatgactatataatgttaagta
gi|14 : T--TGGA-TAGT-ACAACAAGATGGTATTAGTGGAAATTTGCCCCCTCCCCTC--------CCAGAGTGGTACCGAA-CAAC----------CTCATAGTCTATA
gi|16 : CCGGAACATTGCTTGGTGCT-CA----AATATAT---TCTT-CCCAC-GT-TAAAGCAAGGAATGG-GCAA--A-TAAT-GT------AC-CCTTa
gi|17 : GCAAGGAATGG-GCAA--A-TAAT-GGCC-TAAACTCTTTTGT--TTCAAGGGTAC
gi|18 : TGCAATG-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTT
gi|2 : gttttAAT-TTTTGC-ATA--C--ACATAAATCAAG-TTC--TGTTTTGA-ACA-CTAAAGGTAATCC-CAAAA-TGTACCCCGGAACATTGCTCGGTGCT-CAATATA-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAATAGTCTATAAAC-TCTTTGT--TCCAAGGGGACACAACCAGA-AAAAA-ACCC---AACT-AATTAGCATAAAA-A-TACA--CTGAT-CTGCCACTTTGCGATG-TCTGT-TATA--T-----ATTGGT--CTACCTT--TG
gi|3 : TATGCAAAT-TGTTGC-ATATAC--ACACAAATCAAG-TTC--TGTTCTGG-ACA-CTAAGGGTCATCC-TAAAA-TGTACCCTGGAACATTACTTGGTGCT-CA----A-TATAT---TCTT-TTCAC-AT-TAAAGCAAGAAACAG-GCAA--A-CAAT-GCCC-TAAAC-CCATTGC--TCCGAGAGGACACAACCAGA-AAGAA-AAAA---AACT-AACTACCAT-AAA-A-TACA--CTAAG-CTGCCACTTTGCGATG-TATAT-CATA--T-C-AAATTGGT--CTACCTT--TGGA-TAGC-ACAACAAAATGGTATTAGTGGGAATTTGCCC--------C--------CAAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATAtggttagactcaaacatttatacatgttttcctcataatgtgtcacaatctgttagaaaataggtattacatgcacattcaataacaa
gi|4 : ATGTAAAT-TTATGC-ATATAG--ACACAAATCAAG-TTA--TGTTTTGA-ACA-CTAAGGGTCAACC-CAAAA-TGTACCTTGGAACATTGCTTGGTGCT-CA----A-GATAT---TCTTTCCCAC-GT-TACAGTAAGAAATAG-GCAA--A-TAAT-GACC-TAAAG-CTTTTGC--TCCGCGAAGTCACAACC-TA-TAGAA-AAA----AACT-AACTACCAT-AAA-A-TACA--TAAAG-CTGCCACTTTGCGATG-CCTGT-CATA--T-C-AAACTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTTGCCC--------C--------CCAAAGTGGTACCGAC-CAACCTAT--CTGGCTCATGGACTAta
gi|5 : TATGCAAAA-TTTTGC-ATATAC--ACACACATCAAG-TTT--TGTT------------------------AAAG-TGTACTCTGGAACATTGCTTGGTGTT-CA----A-TATAT---TCCT-CCCAC-AT-TAAAGCAAGGATTAG-GCCA--A-TAAT-GTCC-AAAAA-CCTTTGT--TCCGAGGGGACACAACCAGA-A--AA-AAAC---AACT-AACTACCAT-AAA-A-TACA--C-AAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-CAAAATTGGT--CTACCCT--TGGG-TAGC-ACAACAAAATGGTATTTTTGGCAATTTGCCC--------CCCACCCCTCCAGAGTGATATCGAA-CAACCTAT--CTGACTCATGGACTATa
gi|6 : CAAAT-TTTTGCGATATATTAACACAAAC-AAG-TT---TGTTTTTG-ACA-CTAAAG--CATCC-CAA---TG-ACCCTGGAAC-TAGCTT--TACT-CA----A-TATAT---TCT--CTCACGAT-TAAAGCAAG--ATAT-GCAA--AATAAT-GTCC--AAAC-C-TTTGC--TCCGAG--------ACCAGA-AAAAA-AAAACCCAACT-AATTAGCAT-AAA---TA-A--TAAAG-CTGCCACTTTGCGATG-TC--T-TATA--TAC-AAATTGGT--CTACT------GA-TAGT-ACAACAA-ATGGTTCTAGTGACAATCCCCCC--------C--------CCAAAG-GGTATCGAATCAACCTATTCTTGCCTCATGGACTAT
gi|7 : tgcCAAATGTTTTGC-ATATAC--ACACAAACCAAGATTCCCTGTTTTGACACAACTAAGGGTCATCCGCAAAAATGTATTCTGGATCATTGCTTGGTGCC-CA----A-TATATACGTCTT-CCCACAATGTGAAGAAGGAAATAGTGCAACCA-TAAT-GTCC-AAACC-CCTTTGCAATCCGAGAGGACACAACCAGA-AAAAA-AA----------AACTAGGAT-AAACATTACAACTAAAGTCTGCCATTTCG-AATGTTCTATATATAAGT-C-AAATTGTTCACTACCCT--GGCAGTAGTAACAACAAGAT
gi|8 : ATGCAAAT-GTTTGC-ATATAC--ACACAAACCAAG-TTC--TTTTTTGA-ACA-CTAAGGGCCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATTT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAAAGGACACAACCAGACAAAAATAACC---AACT-AACTAGCATAAAA-A-TACA--TAAAG-TTGCCATTTTCCGATG-TCTAT-CATA--T-C-AAATTGGT--CAACTCT--TGGA-TAGT-AC
gi|9 : GGTGCTTCA----A-TAAAT---TCCT-CCGAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GGCC-TAAAA-AGTTTGC--TCCGAGGAGACACAACCAGA-AA-AA-AAAC---TATTAAACTACCAT-ATA-A-TACT--CACAT-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTAGT--ATACCCTTATGGC-TAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTGCATATAAGAGCATTGCCCCCCGAAGTGTACCGATGGGTCCAAGATTTTGCCTCACTTGGCTCATAGACTAATA
Alignments
lowQualScore : 11 11111 33333333333333333
lowQualScore : 4 4 66 4 666 2 5 5 5 5 3 7777 3 666 3 7 3 3 44 3 3 33 3 0 33 3 11 3 11111 3 6 3 3 44 0 3 3 3 44 3 3 44 0 44 3 4 0 22 11111111111111111 5 77
lowQualScore : . . .. . ... . . . . . . .... . ... . . . . .. . . .. . . .. . .. . ..... . . . . .. . . . . .. . . .. . .. . . . .. ................. . ..
lowQualScore : 4 4 11 4 222 2 0 0 0 0 6 7777 6 444 6 3 6 1 22 1 1 77 1 2 99 1 22 1 33333 3 7 1 1 22 8 1 1 1 66 3 3 66 2 22 6 4 2 11 44444444444444444 7 99
consensus : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
Reference ( family-1882 ) : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
gi|1 : GCAAAT-TTTTCC-ATATAC--ACACAAATCAGG-TTC--TATTATGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTTCTTGGTGCT-AA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGAAAAAG-GCAA--A-C-AT-GTCC-TAACC-CCTTTGC--TCTGAGGGGACACNA--AAA-AGGCA-AAA---
gi|1 : AAAAG-GCAA--A--AAT-GTCC-TAACC-CCTTTGC--TCTGAGGGGACACAACTAAA-AA-AA-CAA---C-AACA-AATAACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTAGCAATTTGTCC--------C--------CTAAAGTGGTACCGAA-CAATCAAT--CTGGCTCATGGACTAatgtcctaacccctttgctctgaggggacacaactaaaaaaacaacaacaaataaccataaaatacacaaagctgccactttgcgatgtctatcatatcaaattggtctacccttggatagcacaacaagatggtattagtagcaatttgtcccctaaagtggtaccgaacaatcaatctggctcatggactaatt
gi|10 : gcaaatttttccatatacacacaaatcaggttctattatgaacactaagggtcatcccaaaatgtaccctggaacatttcttggtgctaaatatattcttcccacattaaagcaagaaaaaggcaaacatgtcctaacccctttgctctgaggggacacnaGC--TCCGAGGGGACACAACTAGA-AAAAA-AAATC-C-AACT-AACTACCAT-AAA-A-TACC--CAACG-CTGCTACTTTGAGATG-TCTAT-CACA--T-C-AAATTGAT--CTACCCT--TGGA-TAGC----ACAAGATGGTATTAGTGGCAATCC-CCC--------C--------CCCAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATAatt
gi|11 : TTGT--TCCGAGGGGACACAACCAGA-A--AA-AAA---CGAACT-AGCTACCAT-AAA-A-TAT---CAAAG-C-------------TG-TCTAT-CATA--T-C-AAATTGAC--CTACCGT--T--A-TAG
gi|12 : A-A-TACA--CTAAG-TTGCTACTATGCGATG-TCTAT-CTTA--T-C--AATTGGT--CTACCTT--TGttagaatcaaacatttatgcatgctttcctcaaaacgtgccacaatctgatagaaaataaggattacatgca
gi|13 : -CA----A-GATAT---TCTT-CCCAC-AT-TACAGCAAGGCATAG-GCAA--A-TGAT-GGCC-T----------GC--TCTGCATTGACACAACCAGT-A-GAA-AAA---C-AACT-AACTACCAT-AAA-A-TACG--TAAAG-CTGCCATTTTGCAATG-TCTAT-CAtggttagaatcgctgtttttcctcaaaattgtgccacaattgcctattattgtctacttgtgctatgactatataatgttaagta
gi|14 : T--TGGA-TAGT-ACAACAAGATGGTATTAGTGGAAATTTGCCCCCTCCCCTC--------CCAGAGTGGTACCGAA-CAAC----------CTCATAGTCTATA
gi|16 : CCGGAACATTGCTTGGTGCT-CA----AATATAT---TCTT-CCCAC-GT-TAAAGCAAGGAATGG-GCAA--A-TAAT-GT------AC-CCTTa
gi|17 : GCAAGGAATGG-GCAA--A-TAAT-GGCC-TAAACTCTTTTGT--TTCAAGGGTAC
gi|18 : TGCAATG-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTT
gi|2 : gttttAAT-TTTTGC-ATA--C--ACATAAATCAAG-TTC--TGTTTTGA-ACA-CTAAAGGTAATCC-CAAAA-TGTACCCCGGAACATTGCTCGGTGCT-CAATATA-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAATAGTCTATAAAC-TCTTTGT--TCCAAGGGGACACAACCAGA-AAAAA-ACC---C-AACT-AATTAGCATAAAA-A-TACA--CTGAT-CTGCCACTTTGCGATG-TCTGT-TATA--T-----ATTGGT--CTACCTT--TG
gi|3 : TATGCAAAT-TGTTGC-ATATAC--ACACAAATCAAG-TTC--TGTTCTGG-ACA-CTAAGGGTCATCC-TAAAA-TGTACCCTGGAACATTACTTGGTGCT-CA----A-TATAT---TCTT-TTCAC-AT-TAAAGCAAGAAACAG-GCAA--A-CAAT-GCCC-TAAAC-CCATTGC--TCCGAGAGGACACAACCAGA-AAGAA-AAA---A-AACT-AACTACCAT-AAA-A-TACA--CTAAG-CTGCCACTTTGCGATG-TATAT-CATA--T-C-AAATTGGT--CTACCTT--TGGA-TAGC-ACAACAAAATGGTATTAGTGGGAATTTGCCC--------C--------CAAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATAtggttagactcaaacatttatacatgttttcctcataatgtgtcacaatctgttagaaaataggtattacatgcacattcaataacaa
gi|4 : ATGTAAAT-TTATGC-ATATAG--ACACAAATCAAG-TTA--TGTTTTGA-ACA-CTAAGGGTCAACC-CAAAA-TGTACCTTGGAACATTGCTTGGTGCT-CA----A-GATAT---TCTTTCCCAC-GT-TACAGTAAGAAATAG-GCAA--A-TAAT-GACC-TAAAG-CTTTTGC--TCCGCGAAGTCACAACC-TA-TAGAA-AAA-----AACT-AACTACCAT-AAA-A-TACA--TAAAG-CTGCCACTTTGCGATG-CCTGT-CATA--T-C-AAACTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTTGCCC--------C--------CCAAAGTGGTACCGAC-CAACCTAT--CTGGCTCATGGACTAta
gi|5 : TATGCAAAA-TTTTGC-ATATAC--ACACACATCAAG-TTT--TGTT------------------------AAAG-TGTACTCTGGAACATTGCTTGGTGTT-CA----A-TATAT---TCCT-CCCAC-AT-TAAAGCAAGGATTAG-GCCA--A-TAAT-GTCC-AAAAA-CCTTTGT--TCCGAGGGGACACAACCAGA-A--AA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--C-AAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-CAAAATTGGT--CTACCCT--TGGG-TAGC-ACAACAAAATGGTATTTTTGGCAATTTGCCC--------CCCACCCCTCCAGAGTGATATCGAA-CAACCTAT--CTGACTCATGGACTATa
gi|6 : CAAAT-TTTTGCGATATATTAACACAAAC-AAG-TT---TGTTTTTG-ACA-CTAAAG--CATCC-CAA---TG-ACCCTGGAAC-TAGCTT--TACT-CA----A-TATAT---TCT--CTCACGAT-TAAAGCAAG--ATAT-GCAA--AATAAT-GTCC--AAAC-C-TTTGC--TCCGAG--------ACCAGA-AAAAA-AAAACCC-AACT-AATTAGCAT-AAA---TA-A--TAAAG-CTGCCACTTTGCGATG-TC--T-TATA--TAC-AAATTGGT--CTACT------GA-TAGT-ACAACAA-ATGGTTCTAGTGACAATCCCCCC--------C--------CCAAAG-GGTATCGAATCAACCTATTCTTGCCTCATGGACTAT
gi|7 : tgcCAAATGTTTTGC-ATATAC--ACACAAACCAAGATTCCCTGTTTTGACACAACTAAGGGTCATCCGCAAAAATGTATTCTGGATCATTGCTTGGTGCC-CA----A-TATATACGTCTT-CCCACAATGTGAAGAAGGAAATAGTGCAACCA-TAAT-GTCC-AAACC-CCTTTGCAATCCGAGAGGACACAACCAGA-AAAAA-AA-----------AACTAGGAT-AAACATTACAACTAAAGTCTGCCATTTCG-AATGTTCTATATATAAGT-C-AAATTGTTCACTACCCT--GGCAGTAGTAACAACAAGAT
gi|8 : ATGCAAAT-GTTTGC-ATATAC--ACACAAACCAAG-TTC--TTTTTTGA-ACA-CTAAGGGCCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATTT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAAAGGACACAACCAGACAAAAATAAC---C-AACT-AACTAGCATAAAA-A-TACA--TAAAG-TTGCCATTTTCCGATG-TCTAT-CATA--T-C-AAATTGGT--CAACTCT--TGGA-TAGT-AC
gi|9 : GGTGCTTCA----A-TAAAT---TCCT-CCGAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GGCC-TAAAA-AGTTTGC--TCCGAGGAGACACAACCAGA-AA-AA-AAA---C-TATTAAACTACCAT-ATA-A-TACT--CACAT-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTAGT--ATACCCTTATGGC-TAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTGCATATAAGAGCATTGCCCCCCGAAGTGTACCGATGGGTCCAAGATTTTGCCTCACTTGGCTCATAGACTAATA
Alignments
lowQualScore : 11 11111 33333333333333333
lowQualScore : 4 4 66 4 666 2 5 5 5 5 3 7777 3 666 3 7 3 3 44 3 3 33 3 0 33 3 11 3 11111 3 6 3 3 44 0 3 3 3 44 3 3 44 0 44 3 4 0 22 11111111111111111 5 77
lowQualScore : . . .. . ... . . . . . . .... . ... . . . . .. . . .. . . .. . .. . ..... . . . . .. . . . . .. . . .. . .. . . . .. ................. . ..
lowQualScore : 4 4 11 4 222 2 0 0 0 0 6 7777 6 444 6 3 6 1 22 1 1 77 1 2 99 1 22 1 33333 3 7 1 1 22 8 1 1 1 66 3 3 66 2 22 6 4 2 11 44444444444444444 7 99
consensus : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
Reference ( family-1882 ) : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
gi|1 : GCAAAT-TTTTCC-ATATAC--ACACAAATCAGG-TTC--TATTATGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTTCTTGGTGCT-AA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGAAAAAG-GCAA--A-C-AT-GTCC-TAACC-CCTTTGC--TCTGAGGGGACACNA--AAA-AGGCA-AAA---
gi|1 : AAAAG-GCAA--A--AAT-GTCC-TAACC-CCTTTGC--TCTGAGGGGACACAACTAAA-AA-AA-CAA---C-AACA-AATAACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTAGCAATTTGTCC--------C--------CTAAAGTGGTACCGAA-CAATCAAT--CTGGCTCATGGACTAatgtcctaacccctttgctctgaggggacacaactaaaaaaacaacaacaaataaccataaaatacacaaagctgccactttgcgatgtctatcatatcaaattggtctacccttggatagcacaacaagatggtattagtagcaatttgtcccctaaagtggtaccgaacaatcaatctggctcatggactaatt
gi|10 : gcaaatttttccatatacacacaaatcaggttctattatgaacactaagggtcatcccaaaatgtaccctggaacatttcttggtgctaaatatattcttcccacattaaagcaagaaaaaggcaaacatgtcctaacccctttgctctgaggggacacnaGC--TCCGAGGGGACACAACTAGA-AAAAA-AAATC-C-AACT-AACTACCAT-AAA-A-TACC--CAACG-CTGCTACTTTGAGATG-TCTAT-CACA--T-C-AAATTGAT--CTACCCT--TGGA-TAGC----ACAAGATGGTATTAGTGGCAATCC-CCC--------C--------CCCAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATAatt
gi|11 : TTGT--TCCGAGGGGACACAACCAGA-A--AA-AAA---CGAACT-AGCTACCAT-AAA-A-TAT---CAAAG-C-------------TG-TCTAT-CATA--T-C-AAATTGAC--CTACCGT--T--A-TAG
gi|12 : A-A-TACA--CTAAG-TTGCTACTATGCGATG-TCTAT-CTTA--T-C--AATTGGT--CTACCTT--TGttagaatcaaacatttatgcatgctttcctcaaaacgtgccacaatctgatagaaaataaggattacatgca
gi|13 : -CA----A-GATAT---TCTT-CCCAC-AT-TACAGCAAGGCATAG-GCAA--A-TGAT-GGCC-T----------GC--TCTGCATTGACACAACCAGT-A-GAA-AAA---C-AACT-AACTACCAT-AAA-A-TACG--TAAAG-CTGCCATTTTGCAATG-TCTAT-CAtggttagaatcgctgtttttcctcaaaattgtgccacaattgcctattattgtctacttgtgctatgactatataatgttaagta
gi|14 : T--TGGA-TAGT-ACAACAAGATGGTATTAGTGGAAATTTGCCCCCTCCCCTC--------CCAGAGTGGTACCGAA-CAAC----------CTCATAGTCTATA
gi|16 : CCGGAACATTGCTTGGTGCT-CA----AATATAT---TCTT-CCCAC-GT-TAAAGCAAGGAATGG-GCAA--A-TAAT-GT------AC-CCTTa
gi|17 : GCAAGGAATGG-GCAA--A-TAAT-GGCC-TAAACTCTTTTGT--TTCAAGGGTAC
gi|18 : TGCAATG-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTT
gi|2 : gttttAAT-TTTTGC-ATA--C--ACATAAATCAAG-TTC--TGTTTTGA-ACA-CTAAAGGTAATCC-CAAAA-TGTACCCCGGAACATTGCTCGGTGCT-CAATATA-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAATAGTCTATAAAC-TCTTTGT--TCCAAGGGGACACAACCAGA-AAAAA-ACC---C-AACT-AATTAGCATAAAA-A-TACA--CTGAT-CTGCCACTTTGCGATG-TCTGT-TATA--T-----ATTGGT--CTACCTT--TG
gi|3 : TATGCAAAT-TGTTGC-ATATAC--ACACAAATCAAG-TTC--TGTTCTGG-ACA-CTAAGGGTCATCC-TAAAA-TGTACCCTGGAACATTACTTGGTGCT-CA----A-TATAT---TCTT-TTCAC-AT-TAAAGCAAGAAACAG-GCAA--A-CAAT-GCCC-TAAAC-CCATTGC--TCCGAGAGGACACAACCAGA-AAGAA-AAA---A-AACT-AACTACCAT-AAA-A-TACA--CTAAG-CTGCCACTTTGCGATG-TATAT-CATA--T-C-AAATTGGT--CTACCTT--TGGA-TAGC-ACAACAAAATGGTATTAGTGGGAATTTGCCC--------C--------CAAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATAtggttagactcaaacatttatacatgttttcctcataatgtgtcacaatctgttagaaaataggtattacatgcacattcaataacaa
gi|4 : ATGTAAAT-TTATGC-ATATAG--ACACAAATCAAG-TTA--TGTTTTGA-ACA-CTAAGGGTCAACC-CAAAA-TGTACCTTGGAACATTGCTTGGTGCT-CA----A-GATAT---TCTTTCCCAC-GT-TACAGTAAGAAATAG-GCAA--A-TAAT-GACC-TAAAG-CTTTTGC--TCCGCGAAGTCACAACC-TA-TAGAA-AAA-----AACT-AACTACCAT-AAA-A-TACA--TAAAG-CTGCCACTTTGCGATG-CCTGT-CATA--T-C-AAACTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTTGCCC--------C--------CCAAAGTGGTACCGAC-CAACCTAT--CTGGCTCATGGACTAta
gi|5 : TATGCAAAA-TTTTGC-ATATAC--ACACACATCAAG-TTT--TGTT------------------------AAAG-TGTACTCTGGAACATTGCTTGGTGTT-CA----A-TATAT---TCCT-CCCAC-AT-TAAAGCAAGGATTAG-GCCA--A-TAAT-GTCC-AAAAA-CCTTTGT--TCCGAGGGGACACAACCAGA-A--AA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--C-AAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-CAAAATTGGT--CTACCCT--TGGG-TAGC-ACAACAAAATGGTATTTTTGGCAATTTGCCC--------CCCACCCCTCCAGAGTGATATCGAA-CAACCTAT--CTGACTCATGGACTATa
gi|6 : CAAAT-TTTTGCGATATATTAACACAAAC-AAG-TT---TGTTTTTG-ACA-CTAAAG--CATCC-CAA---TG-ACCCTGGAAC-TAGCTT--TACT-CA----A-TATAT---TCT--CTCACGAT-TAAAGCAAG--ATAT-GCAA--AATAAT-GTCC--AAAC-C-TTTGC--TCCGAG--------ACCAGA-AAAAA-AAAACCC-AACT-AATTAGCAT-AAA---TA-A--TAAAG-CTGCCACTTTGCGATG-TC--T-TATA--TAC-AAATTGGT--CTACT------GA-TAGT-ACAACAA-ATGGTTCTAGTGACAATCCCCCC--------C--------CCAAAG-GGTATCGAATCAACCTATTCTTGCCTCATGGACTAT
gi|7 : tgcCAAATGTTTTGC-ATATAC--ACACAAACCAAGATTCCCTGTTTTGACACAACTAAGGGTCATCCGCAAAAATGTATTCTGGATCATTGCTTGGTGCC-CA----A-TATATACGTCTT-CCCACAATGTGAAGAAGGAAATAGTGCAACCA-TAAT-GTCC-AAACC-CCTTTGCAATCCGAGAGGACACAACCAGA-AAAAA-AA-----------AACTAGGAT-AAACATTACAACTAAAGTCTGCCATTTCG-AATGTTCTATATATAAGT-C-AAATTGTTCACTACCCT--GGCAGTAGTAACAACAAGAT
gi|8 : ATGCAAAT-GTTTGC-ATATAC--ACACAAACCAAG-TTC--TTTTTTGA-ACA-CTAAGGGCCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATTT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAAAGGACACAACCAGACAAAAATAAC---C-AACT-AACTAGCATAAAA-A-TACA--TAAAG-TTGCCATTTTCCGATG-TCTAT-CATA--T-C-AAATTGGT--CAACTCT--TGGA-TAGT-AC
gi|9 : GGTGCTTCA----A-TAAAT---TCCT-CCGAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GGCC-TAAAA-AGTTTGC--TCCGAGGAGACACAACCAGA-AA-AA-AAA---C-TATTAAACTACCAT-ATA-A-TACT--CACAT-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTAGT--ATACCCTTATGGC-TAG
blockSeqs : G G TA A CCC T C A G A T ATAT A ACG T G G T CC A A AT T AA C AA T ACCC A A C T AC T T A AG A A CA TA G A TG CCTCCCCTC T TC
blockSeqs : . . . . C C . . . . . . . . . A . . . . . T . . . AA . TCC . A . . . . . . . . . . . . . TG CCCACCCCT . .
blockSeqs : . . . . C T . . . . . . . . . . . . . . . T . . . AG . CG . . . . . . . . . . . . . . . TG C . .
blockSeqs : . . . . C T . . . . . . . . . . . . . . . T . . . AG . C . . . . . . . . . . . . . . . TG C . .
blockSeqs : . . . . A T . . . . . . . . . . . . . . . T . . . AA . C . . . . . . . . . . . . . . . CC C . .
blockSeqs : . . . . T T . . . . . . . . . . . . . . . T . . . AA . A . . . . . . . . . . . . . . . C C . .
blockSeqs : . . . . C . . . . . . . . . . . . . . . . A . . . AA . C . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . . . A . C . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . G . C . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T . . . A . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : .
blockSeqCons :
originalCons : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
finalCons : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTGCATATAAGAGCATTGCCCCCCGAAGTGTACCGATGGGTCCAAGATTTTGCCTCACTTGGCTCATAGACTAATA
Alignments
lowQualScore : 11 11111 33333333333333333
lowQualScore : 4 4 66 4 666 2 5 5 5 5 3 7777 3 666 3 7 3 3 44 3 3 33 3 0 33 3 11 3 11111 3 6 3 3 44 0 3 3 3 44 3 3 44 0 44 3 4 0 22 11111111111111111 5 77
lowQualScore : . . .. . ... . . . . . . .... . ... . . . . .. . . .. . . .. . .. . ..... . . . . .. . . . . .. . . .. . .. . . . .. ................. . ..
lowQualScore : 4 4 11 4 222 2 0 0 0 0 6 7777 6 444 6 3 6 1 22 1 1 77 1 2 99 1 22 1 33333 3 7 1 1 22 8 1 1 1 66 3 3 66 2 22 6 4 2 11 44444444444444444 7 99
consensus : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
Reference ( family-1882 ) : TATGCAAAT-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTTTTGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAGGGGACACAACCAGA-AAGAA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTCGCCC--------C--------CCAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATA
gi|1 : GCAAAT-TTTTCC-ATATAC--ACACAAATCAGG-TTC--TATTATGA-ACA-CTAAGGGTCATCC-CAAAA-TGTACCCTGGAACATTTCTTGGTGCT-AA----A-TATAT---TCTT-CCCAC-AT-TAAAGCAAGAAAAAG-GCAA--A-C-AT-GTCC-TAACC-CCTTTGC--TCTGAGGGGACACNA--AAA-AGGCA-AAA---
gi|1 : AAAAG-GCAA--A--AAT-GTCC-TAACC-CCTTTGC--TCTGAGGGGACACAACTAAA-AA-AA-CAA---C-AACA-AATAACCAT-AAA-A-TACA--CAAAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTAGCAATTTGTCC--------C--------CTAAAGTGGTACCGAA-CAATCAAT--CTGGCTCATGGACTAatgtcctaacccctttgctctgaggggacacaactaaaaaaacaacaacaaataaccataaaatacacaaagctgccactttgcgatgtctatcatatcaaattggtctacccttggatagcacaacaagatggtattagtagcaatttgtcccctaaagtggtaccgaacaatcaatctggctcatggactaatt
gi|10 : gcaaatttttccatatacacacaaatcaggttctattatgaacactaagggtcatcccaaaatgtaccctggaacatttcttggtgctaaatatattcttcccacattaaagcaagaaaaaggcaaacatgtcctaacccctttgctctgaggggacacnaGC--TCCGAGGGGACACAACTAGA-AAAAA-AAATC-C-AACT-AACTACCAT-AAA-A-TACC--CAACG-CTGCTACTTTGAGATG-TCTAT-CACA--T-C-AAATTGAT--CTACCCT--TGGA-TAGC----ACAAGATGGTATTAGTGGCAATCC-CCC--------C--------CCCAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATAatt
gi|11 : TTGT--TCCGAGGGGACACAACCAGA-A--AA-AAA---CGAACT-AGCTACCAT-AAA-A-TAT---CAAAG-C-------------TG-TCTAT-CATA--T-C-AAATTGAC--CTACCGT--T--A-TAG
gi|12 : A-A-TACA--CTAAG-TTGCTACTATGCGATG-TCTAT-CTTA--T-C--AATTGGT--CTACCTT--TGttagaatcaaacatttatgcatgctttcctcaaaacgtgccacaatctgatagaaaataaggattacatgca
gi|13 : -CA----A-GATAT---TCTT-CCCAC-AT-TACAGCAAGGCATAG-GCAA--A-TGAT-GGCC-T----------GC--TCTGCATTGACACAACCAGT-A-GAA-AAA---C-AACT-AACTACCAT-AAA-A-TACG--TAAAG-CTGCCATTTTGCAATG-TCTAT-CAtggttagaatcgctgtttttcctcaaaattgtgccacaattgcctattattgtctacttgtgctatgactatataatgttaagta
gi|14 : T--TGGA-TAGT-ACAACAAGATGGTATTAGTGGAAATTTGCCCCCTCCCCTC--------CCAGAGTGGTACCGAA-CAAC----------CTCATAGTCTATA
gi|16 : CCGGAACATTGCTTGGTGCT-CA----AATATAT---TCTT-CCCAC-GT-TAAAGCAAGGAATGG-GCAA--A-TAAT-GT------AC-CCTTa
gi|17 : GCAAGGAATGG-GCAA--A-TAAT-GGCC-TAAACTCTTTTGT--TTCAAGGGTAC
gi|18 : TGCAATG-TTTTGC-ATATAC--ACACAAACCAAG-TTC--TGTT
gi|2 : gttttAAT-TTTTGC-ATA--C--ACATAAATCAAG-TTC--TGTTTTGA-ACA-CTAAAGGTAATCC-CAAAA-TGTACCCCGGAACATTGCTCGGTGCT-CAATATA-TATAT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAATAGTCTATAAAC-TCTTTGT--TCCAAGGGGACACAACCAGA-AAAAA-ACC---C-AACT-AATTAGCATAAAA-A-TACA--CTGAT-CTGCCACTTTGCGATG-TCTGT-TATA--T-----ATTGGT--CTACCTT--TG
gi|3 : TATGCAAAT-TGTTGC-ATATAC--ACACAAATCAAG-TTC--TGTTCTGG-ACA-CTAAGGGTCATCC-TAAAA-TGTACCCTGGAACATTACTTGGTGCT-CA----A-TATAT---TCTT-TTCAC-AT-TAAAGCAAGAAACAG-GCAA--A-CAAT-GCCC-TAAAC-CCATTGC--TCCGAGAGGACACAACCAGA-AAGAA-AAA---A-AACT-AACTACCAT-AAA-A-TACA--CTAAG-CTGCCACTTTGCGATG-TATAT-CATA--T-C-AAATTGGT--CTACCTT--TGGA-TAGC-ACAACAAAATGGTATTAGTGGGAATTTGCCC--------C--------CAAAAGTGGTACCGAA-CAACCTAT--CTGGCTCATGGACTATAtggttagactcaaacatttatacatgttttcctcataatgtgtcacaatctgttagaaaataggtattacatgcacattcaataacaa
gi|4 : ATGTAAAT-TTATGC-ATATAG--ACACAAATCAAG-TTA--TGTTTTGA-ACA-CTAAGGGTCAACC-CAAAA-TGTACCTTGGAACATTGCTTGGTGCT-CA----A-GATAT---TCTTTCCCAC-GT-TACAGTAAGAAATAG-GCAA--A-TAAT-GACC-TAAAG-CTTTTGC--TCCGCGAAGTCACAACC-TA-TAGAA-AAA-----AACT-AACTACCAT-AAA-A-TACA--TAAAG-CTGCCACTTTGCGATG-CCTGT-CATA--T-C-AAACTGGT--CTACCCT--TGGA-TAGC-ACAACAAGATGGTATTAGTGGCAATTTGCCC--------C--------CCAAAGTGGTACCGAC-CAACCTAT--CTGGCTCATGGACTAta
gi|5 : TATGCAAAA-TTTTGC-ATATAC--ACACACATCAAG-TTT--TGTT------------------------AAAG-TGTACTCTGGAACATTGCTTGGTGTT-CA----A-TATAT---TCCT-CCCAC-AT-TAAAGCAAGGATTAG-GCCA--A-TAAT-GTCC-AAAAA-CCTTTGT--TCCGAGGGGACACAACCAGA-A--AA-AAA---C-AACT-AACTACCAT-AAA-A-TACA--C-AAG-CTGCCACTTTGCGATG-TCTAT-CATA--T-CAAAATTGGT--CTACCCT--TGGG-TAGC-ACAACAAAATGGTATTTTTGGCAATTTGCCC--------CCCACCCCTCCAGAGTGATATCGAA-CAACCTAT--CTGACTCATGGACTATa
gi|6 : CAAAT-TTTTGCGATATATTAACACAAAC-AAG-TT---TGTTTTTG-ACA-CTAAAG--CATCC-CAA---TG-ACCCTGGAAC-TAGCTT--TACT-CA----A-TATAT---TCT--CTCACGAT-TAAAGCAAG--ATAT-GCAA--AATAAT-GTCC--AAAC-C-TTTGC--TCCGAG--------ACCAGA-AAAAA-AAAACCC-AACT-AATTAGCAT-AAA---TA-A--TAAAG-CTGCCACTTTGCGATG-TC--T-TATA--TAC-AAATTGGT--CTACT------GA-TAGT-ACAACAA-ATGGTTCTAGTGACAATCCCCCC--------C--------CCAAAG-GGTATCGAATCAACCTATTCTTGCCTCATGGACTAT
gi|7 : tgcCAAATGTTTTGC-ATATAC--ACACAAACCAAGATTCCCTGTTTTGACACAACTAAGGGTCATCCGCAAAAATGTATTCTGGATCATTGCTTGGTGCC-CA----A-TATATACGTCTT-CCCACAATGTGAAGAAGGAAATAGTGCAACCA-TAAT-GTCC-AAACC-CCTTTGCAATCCGAGAGGACACAACCAGA-AAAAA-AA-----------AACTAGGAT-AAACATTACAACTAAAGTCTGCCATTTCG-AATGTTCTATATATAAGT-C-AAATTGTTCACTACCCT--GGCAGTAGTAACAACAAGAT
gi|8 : ATGCAAAT-GTTTGC-ATATAC--ACACAAACCAAG-TTC--TTTTTTGA-ACA-CTAAGGGCCATCC-CAAAA-TGTACCCTGGAACATTGCTTGGTGCT-CA----A-TATTT---TCTT-CCCAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GTCC-TAAAC-CCTTTGC--TCCGAAAGGACACAACCAGACAAAAATAAC---C-AACT-AACTAGCATAAAA-A-TACA--TAAAG-TTGCCATTTTCCGATG-TCTAT-CATA--T-C-AAATTGGT--CAACTCT--TGGA-TAGT-AC
gi|9 : GGTGCTTCA----A-TAAAT---TCCT-CCGAC-AT-TAAAGCAAGGAATAG-GCAA--A-TAAT-GGCC-TAAAA-AGTTTGC--TCCGAGGAGACACAACCAGA-AA-AA-AAA---C-TATTAAACTACCAT-ATA-A-TACT--CACAT-CTGCCACTTTGCGATG-TCTAT-CATA--T-C-AAATTAGT--ATACCCTTATGGC-TAG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGTGCATATAAGAGCATTGCCCCCCGAAGTGTACCGATGGGTCCAAGATTTTGCCTCACTTGGCTCATAGACTAATA