lowQualScore : 222 2 1 2 22222222222 222222222222 222222222222222 111 11111 2 1 111111111 1 111 2222 111 33333333 1111 11 1 111 3333333333333333333333 11 333333333333333 1 11 555555 222222222 111 444444444 33333 1111 11111 1 22222 1 11 444444444444 111 222 11 1 3333333 11 11 11111 1 1 1111 1 2 222222 2 44444444444444444444 33 1111
lowQualScore : 4 55 3 3 3 55 3 3 000 3 9 7 55 55 7777 2 4 55 8 55555555555 3 3 3 3 3 3 4 4 222222222222 66 777777777777777 66 9999 5 66 5 5 5 555 5 22222 888 5 4 888 66 0 777777777 5 5 0 5 888 5 1 555 0000 5 333 66 99 5 5 0 5 5 5 66 5 33333333 66 0000 5 5 5 5 0 66 5 55 5 0 5 5 5 333 5 5 5 5 8888 4444444444444444444444 00 55 5 666 0 66 5 5 5 5 5 5 5 5 5 5 111111111111111 5 5 66 2 00 000000 0 66 5 555555555 666 555 0 5 5 555555555 5 5 33333 5 66 66 0000 66 777 5 44444 5 8 1 888 888 55555 5 3 0 88 4 4 4 4 4 5 5 5 5 888 5 5 5 777777777777 5 222 5 333 5 5 11 5 5 0 66 66 1 5555555 4 4 4 66 77 4 00 11111 8 4 4 777 55 4 4 2 5 66 5 0 5 5 5 5555 0 2 777777 7 888 77777777777777777777 5 66 66 22 4444 5
lowQualScore : . .. . . . .. . . ... . . . .. .. .... . . .. . ........... . . . . . . . . ............ .. ............... .. .... . .. . . . ... . ..... ... . . ... .. . ......... . . . . ... . . ... .... . ... .. .. . . . . . . .. . ........ .. .... . . . . . .. . .. . . . . . ... . . . . .... ...................... .. .. . ... . .. . . . . . . . . . . ............... . . .. . .. ...... . .. . ......... ... ... . . . ......... . . ..... . .. .. .... .. ... . ..... . . . ... ... ..... . . . .. . . . . . . . . . ... . . . ............ . ... . ... . . .. . . . .. .. . ....... . . . .. .. . .. ..... . . . ... .. . . . . .. . . . . . .... . . ...... . ... .................... . .. .. .. .... .
lowQualScore : 0 00 6 6 6 00 6 6 555 6 0 3 00 00 7777 0 0 55 0 00000000000 6 6 6 6 6 6 4 8 888888888888 11 888888888888888 11 4444 0 99 0 0 0 666 0 55555 888 0 4 888 99 0 666666666 0 0 0 0 888 0 4 666 1111 0 888 99 11 0 0 1 0 0 0 99 0 00000000 99 6666 0 0 0 0 4 99 0 99 0 0 0 0 0 111 0 0 0 0 9999 8888888888888888888888 77 99 0 222 4 99 0 7 0 0 0 0 0 0 0 0 222222222222222 0 0 99 0 11 000000 4 99 0 222222222 888 999 8 0 0 555555555 0 0 55555 0 99 99 6666 99 333 7 33333 7 6 9 888 888 99999 0 2 0 00 4 4 4 4 4 0 0 0 0 888 0 0 0 111111111111 0 222 0 888 0 0 00 0 0 0 11 33 1 8888888 4 4 4 11 44 4 66 11111 9 4 0 000 55 4 4 8 0 99 0 0 0 0 0 1111 0 1 222222 8 888 22222222222222222222 0 99 99 99 0000 0
consensus : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AAA--CC-GCA-TCAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTA------------CC--TGTT---------------T--TC----AA-AA--T-CC-AAT-C---GA-GC-----AAAAATAG---A-AACGACC-GAAA---A--CGA-GGCA--T-TTT--TTC-TG-TG-ACG-TCA---TGG-AATGT-C-TA--TTGT-AGA---GC--GA-CTAC-TATGGGA-GAC-ATA-GACA-G--TT-TC-TGC-T--TTT--T----AA-A-C-AGT-CGTTAA--TG-GA-GTG-A-T-GGAAGC-C-TTGTTTC--ATCCG-AT-T-CA-AA-A--GTAT--------ATGGACN-------ATTCT-AATA-TCGAATT-A-G-GTCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGC-TAA-TCCG-TG-T---------------GTA-TA-TC--TTGTCAA-TTTCGTGNA-CTCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TTTATA-AT----TGN-C-CG-CGT--AG-T-AC--A--C----C--AGCAT-G-AT-A-----AC-GAAATGGTGAATAGA---AAAA---TT-AT-TG-ACTTTTGAAATTAC-ATAT-ATTG-T-TGCAAA-TG-A-G-A-TTA---AT-AAATTATG-AT-GG--TGT-T-G---ATAAA-TAA--TT-GAT--TTTTTTTA-T-ACGGAA-A-G-AGAAA--G-TAGCGACT-ATTC-CTTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT-AG---GTTG-TTTTGATTA---GG---A--A-------------ACAA-TTTC--AA--CAGACA--TTGAA--T-T-TAGAAAGAGA
Reference ( gi|6 ) : ATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AAA--CC-GCAATCAAAA-TCGG--C--G----CAG-AA-AT--AACAG-GTTA----------CTGATCC-CG-T-AA-TG-TG-GCTATT-TTTA------------CC--TGTT---------------T--TC----AA-AA--T-CC-AAT-C---GA-GC-----AAAAATAG---A-AACGACCCGAAA---A--CGA-GGCA--T-TTT--TTC-TG-TG-ACG-TCA---TGG-AATGT-C-TA--TTGT-AGA---GC--GA-TTAC-TATGGGA-GAC-ATA-GACA-G--TT-TC-T---T--TTT--T----AA-A-C-AGT-CGTTAA--TG-GA-TTG-A-T-GGAAGC-C-TTGTTTC--GTCCG-AT-T-CA-AA-A--GTAT--------ATGGACT-------ATTCT-AATA-TCGAATT-A-G-GTCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGC-TAA-TCCG-TG-T---------------GTA-TA-TC--TTGTAAA-TTTCGTGGAAC-CGAGCAA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TTTATA-AT----TGC-C-CG-CGT--A--T-AC--A--C----C--AGCAT-G-AT-A-----AC-GAAATGGTGAATAGA---AAAA---TT-AT-TG-ACTTTTGAAATTAC-ATAT-ATTG-T-TGCAAA-TG-A-G-A-TTA---AT-AAATTATG-AT-GG--TGT-T-T---ATAAA-TAA--TT-GA---TTTTTTTA-T-ACGGAA-A-G-AGAAA--G-TAGCGACT-ATTTCTTTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATTGATAAT-A----GTTGTTTTTGATTA---GG---A--A-------------ACAA-TTTC--AA--CAGACAT-TTGAA--T-T-TAGAAAGAGA
gi|5 : ATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AA----C-GCA-TCAAAA-TCGG--C--G----CA--AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TT-A------------CC--TGTT---------------T---C----AA-AA--T-CC-AAT-C---GA-GC-----AAAAATAAGAAA-AACGACC--AAA---A--CGA-GGCA--T-TTT--TTC-TG-TGAACG-TCA---T-G-AATGT-C-TA---TGT-AGA---GC--GGCTTAC-TATGGGA-GAC-ATA-GACA-G--TT-TT-G---C--TTT--T----AA-A-C-AGT-CGTTAA--TG-GA-GTG-A-T--GAAGC-CTTTGTTTC--ATCCG-AT-T-CAGAA-A--GTAT--------AT-GAC--------AATCT-AATA-TCGAATT-A-G-G-CAA--CAAACCGCA-ATC-TTT-TATGTCTG-A-GGCTAGC-TAA-TCCGTTG-T---------------GTA-TA-TC--TTGTCAA-TTT-GTTAA---CGAGCGAGCG-GTGTGAA--------G-AACTCTTTT-TAAAAGCTTTTATA-AGA---CGTAC-CG-CGT--AGTT-AC--A--C----C--AGCAT-G-AT-A-----AC-GAAATGGT-AATAGA---AAAA---TT-TTATG-ACTTT--AAATACC-ATAT-ATTGTT-TGCAAA-TGCA-G-A--TA---AT-AAA-TATGAAT-GG---GT-TGTG--ATAAATTAA--TT-GAT--TTTTTTTATT-ACGG-A-A-G-A-AAA--G-TAGCGGAC-ATTCTTTTGAATGGATGA-A-ACT--ATATTATTTGTTT-TGCAC--TA-----CATCTA-T-TGCTTG-G---AAAT--AAGACCGT-G-AAAAATAA-TGA-C--AT-AA-T-TAAC-ATCAGGCT-TT-ATGAATT-ATAAT-AG---GTTG-TTTTGATTA---GG---A--A-------------ACAA-TGTCCAAA--CAGACA--TTGAA--T-T-TAGGAAGAGA
gi|7 : cggtctatgccaatgcaaaaatatttatttgtgactgaaaggATTTTCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA---CC-GCA-TCCAAA-TCGG--C--G----CAG-AA-AT--AACAG--TTA----------TTGTTCC-CG-T-AA-TG-TG-GCAATT-TTTA------------CC--TGTT---------------T--TC----AA-AA--T-CC-AAT-C---GA-GT-----AAAAATAG---A-AATGACC-GAAA---A--CGA-GGCA--T-TTT--TTC-TG-TG-ACG-TCA---TAG-AATGT-C-TA--T-GT-AGA---GC--GG-CTTC-TATGGGA-GAC-ATA-GACA-G--TT-TC-TAC-T--TTT--C----AA-A-C-AGT-CGTTAA--TG-GA-GTG-A-T-GAAAGC-C-TTGTTTC--ATCCG-AT-T-CA-GA-A--GTAT--------ATG-ACA-------ATTCT-AATA-TCGAATT-A-G-GTCAA--C-AAATGCA-ATCTTTT-TATGTCTG-G-GGCTAGC-TAA-TCTG-TG-T---------------GTA-TA-TC--TTGTCAA-TTTCGTGT--CTCGAGCGA--G-GTGTGAA--------GAAACTT-TTT-T-GATGC-TTTATA-AT------A-C-CG-CGT--AG-T-AC--A--C----C--AGCAT-T-AT-A-----AC-GAAATGGT-AATAGA---AAAA---TT-A--TG-AC-TTTGAAA-TAC-ATCT-ATTG-T-TGC-AA-T----A-A-TTG---AT-AAATTATG-ATAGG--TTG-T-G---ATAAA-TAA--TT-TGCATTTTTTTTA-T-AC-GAA-A-G-AGAAA--G-TAGCGACT-ATT--CTTGAAT-G-TGA-A-ACT--ATATTA-TGGTTT-TGCAC--TA-----CATTTA-T-TG-TT--A---AAAT---AGA-TAT-AAAAA
gi|3 : aaagggtctatgcaatgcaaaaatattttattgtgactgcaaaggATTTACTTCAC-G--AG-TTA-A-A--CGTC-AAA-AAA--CCTGCA--TAAAA-TCCG--T--GTCGCCAG-ATTATCAGACAGAGTTA----------TTGATCC--G-T-AA-TGCTGAGCTAAT-TTTA------------CCACTGTT---------------TCTTC----AA-AAAAT-CC-AAT-TCAAGA-GCTTTCCAAAAATAG---A-AACGAC--GAAA---A--CGA-GGCAATT-TTTA-TTC-TG-TG-ACGCTCA---TGG-AATCT---TA--T-GT-A-A---GC--GA-CTAC-TATGAGA-T-C-ATA---CA-T--TT-TC-TGC-T--TTT--T----AA-AAC-AGT-CGTTAA--TA-G---TG-A-TTGGAAGC-C-TTGTTTC--TTCCG-AT-T-CA-AA-A--GTAT--------ACTGACT-------ATTCTTAATA-C--AATT-A-G-GTCAA--C-A-CCGCA-ATCTTT---ATGTCGA-A-GGCTAGC-TAA-TCCG-TG-G---------------GTA-TA-TCTATTGTAAA--TTCGTGAA---CGAGCAA--GCGTG-GAA--------GAAAC-TCTTT-G-GAAGC-TTTATATAA----TGC-C-TG-CGT--G--T-ACATA--C----C--AGCAT-GAAT-A-----ACGGAAATGGT--ATAGA---AAAA---TT-A--TG-AC-TTTGAAAT--C-AT-T-ATT--T-TGCAAATTG-A-G-A-TTA---AT-AAATTAT--AT-GGGTTGTGT-G---ATAAA-TAT--TT-GA---TTTTTTTA-T-ACGAAA-G-GAAGAAA--G-TAGCGGATAATATACTTGAAT-GATGA-AGATT--ATATTA-TGGTTT-TGCACG-TA-----CATTAT-T-TG-TTGCG---AAATTAAAGA-CGT-G--AAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATGAA-TGATAAA-G----GGTG-TTTTGATTA---GG------A-------------ACAA-TTTC--AA--CAGACAA-TTGAAT-T-T-TAGAAAGAGA
gi|9 : gcggtctatggcaatgcacaaaaatattctatttgcgcaaaggaATTTTCGTTACTG--AG-TTA-A-A--CGTATAAACAAA--CC-GCA-TCAAAA-TCGGATC--G----CAGGAA-AT--AACAG-AGTA----------TTGATCC-CG-T-A--TG-TG-GCTATTCTTTA------------CC--TGTT---------------T--TC----AAGAA--T-CC--AT-C----A-GC-----AAAAATAG---AGAACGACC--GAA---A--CAACGGCA--TATTTA-TTC-TGCTG-ACG-TCA---TGG-AATGT---TA--CTGTCAGACGGGC--TA-CTCC-T-CGCGACGCC-ATA-GAC--GCTTT-TC-T---T--CTT--TCTTAAA-A-C-AGT-CATC-A--TG-GAGCTG-ACT-GGAAGC-C-TTGTTTC--ATCCG-AT-CACG-AA-C--GTAT--------ATG
gi|14 : aagagtctatgcaactgaatgcaaaaaaatattttatgtattgactgcaaagggATTTTCTTCATTG--AA-TTA-A-A--CGTA-TAA-AA---TC-GCA-TCAAAA-TCGT--C--A----CAG-AA-AT--AACAAAGTTA----------TCGATAC-CG-T-AA-TG-TG-GCTATT-TTTA------------CC--TGTT---------------T--TC----A
gi|13 : aaagggtctatgcaatgatatggcattttattgtgattgcaaaggATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AA---CC-GCA-TCAAAA-TCGG--C--G----CAG-AA-AT--TACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-G
gi|12 : aagggactatgcaatggaagaataatttattgtgattgcaaaggATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AAA--CC-GCATCCAAAATTCGG--C--G----CAGAAA-AT--TACAG-GTTA----------TTGAT-C-CG-T-AA-TG-TG-Gaaattacattatttaatatattctagtcactcataaaatatccaa
gi|4 : aagggactatgcaatgaagaattaaatttattgtgattgccaaaggTTTACTTCACTG--AGGTTA-A-A--CGTA-AAA-AAA--CC-GCA-TCAAAAATCGG--C--G----CAGGAA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TT-A------------C---TGTT---------------T--TC----AA-AA--T-CC-AATTC---GA-GC-----AAAAATAG---A-AACGACC-GAAA---A--CGA-GGCAAAT-TTT--TTC-T--TGTACG-TCA---TGG-AATGT-C-TA--TCGT-AGAA--GC--GA-CTAC-TATGGGA-GAC-ATA-GACA-G--TT-TC-TGTTT--TTT--T----AA-A-C-AGT-CGTTA---TG-GA-GTG-A-T-GGAAGC-C-TTGTTTC--ATCCG-AT-T-CC-AA-A--GTAT--------AT-GACT-------ATTCT--ATA-TCGAATT-A-G-GTCAA--C-AACCGCA-ATCTTTTATTTGTCTGCG-GGCTAGC-TAACTCCG-TG-T---------------GTA-TA-TC--TTGTCAA--TTCGTGAA---CGAGCAA--G-GTGTGAA--------GAA----CTCTGT-GAAGC-TTTATA-CA----TGC-CGCG--GT--AG-T-AC--A--C----C---GCAT-G-AT-A-----AC-GGAATGGTGATTAGA---AAAAATTTT-AT-TGTACTTTTGAAATACC-ATAT-ATTG-T-TGCAAA-TG-A-GCA-TTA---AT-AAATTATG-AT-GGGTTGT-T-G---ATAAA-TAA--TT-GAT--TTTTTTTA-T-AC-GAA-A-G-AGAAA--GTTAG-GACT-AT---TCTGAAT-GATGA-A-ACT--ATATTA-TGGTTT-TGCAC--TA-----CATTTATT-TG-TTGCG---AAAT--AAGA-CGTGGAAAAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATG-ATTTATAAT-AAAAGGTTG--TTTGATTT---AG---G--A-------------ACA---TTC--AA--CAGAC---TTGAATTT-T-TAGAAAGAGAaaattacattatttaatattatttctagtcacttcataaaaattatccaa
gi|2 : ctctatgcaatggaaaaaatttttatttgactgcaaaggatTCTACTTC-CTG--AG-TTACACA--CGTA-AAA-AA---CC-GCA-TCAAA--TCG---C--G----CAG-AA-A---AACAGAGTTA-----------TGATTC-CG-TTAACTG-TG--CT-TT-TTAA------------CC--TGTT---------------T--TTTTCAAA-AA--T-CCTAAT-CCG-GATGC-----AAAAATAG---A-AACGAACCGAAA---AACCGAAGGCA--T-TTT--T-C-TG-TG-AC--TCA---TGG-AATGTCC-TA---TGT-AGA---GC--GA-CTAC-TATGGGA-GAC-ATATGACACG--TTATC-T---TGCTTT--T----AA-G-C-AGTCCGTTAA--T--GA-GTG-ATT-GGGAGCTC-TTGTTTC--TCCCGAAT-T-CA-GA-ACTGTATAACGTTAAATGCACTACAACTGATTCT--ATA-TCGAATT-AGG-GTC-A--C-AGCGCCA-ATC-TTT-TATGTCTG-A-GGCTAGC--AA-TCCG-TG-T---------------GTATTA-TT--TTGTCAATTTTCGT-GAAC-CGAGTGA--G-GTGTGAACG------AAAACTCATTT-T-TGAGC-ATCATA-ATTATATGC-C-CATCGT--AG-T-AC--A--CCACTC--AGCA--A-AT-AAGGATAC-GAAATGGTGATTAGAAATAAAA---AG-A--TG-ACTTTTGAAA-TAC-ATA--ATTG-TATGCAAA-TG-A-G-ATTTA---ATGAAATT-TG-AT-GGT-TGT-G-A---ATAAT-TAACTTT-GA---TTTTTTTA-TAACGAAA-ACGTAGAAA--G-TAGCGACT-CATTC-ATGAAT-GATGA-A-ACTCAATATTATGGTTTT-TGCAC--TA-----CATTTA-T-TG-TTGCGCAAAAAT--AAGA-CGT-GAAAAATAAATTGA-TCAATAAA-T-T-AC-ATCAG--C-TTAATGAATTA--AATGG----GTTGTTTTCGATTA---AGGCCG--A-------------ACAA-TTTC--AA--CAGACATCTTGAA--TCT-TAGAAAGAGAa
gi|1 : gtctatcaatgcaaaaattctttattgtgactgcaaaggatTTACGTCACTGCAGG-TTA-A-AGGCGTA-CAA-AAC--GA-GCGATCAAAA-TCGG--CCGG----AAG-AA-AT--AACAGAGTTATTATTTTTTTTTGATCCGCGTT-AA-TG-T---CTTTT-TTTATTTTTTTTATTTTT--TGTTTACGCATTTTACCTTT--TC----AA-AA--TCCC-AAT-C---GA-GC-----AAAAATAG---A-AACGACCGGAAACAGA--TGG-GTCA--G-TGTCATTCGTG-TG-A----------GA-AAT-T-CATAAGTTG--AGA---GCGGGA-CTACATATGGGA-GACTATA-TACA-G--TT-TC-TGC-T--TTTCAT----AA-A-CAAGT-CGTTAAACTGAGA-GTGTG-T-GGAAGC-C-TTGTTTCATGTCCG-ATGT-CA-GACA--TTAT--------AT-GACA-------ATTCT-AATA--CGAATT-A----TCAAACT-AACCGCACATCTTTT-TATGT-TG-A--GCTAGCTTAA-TCCG-TGTT---------------GTG-TATTC--TTGTCAA-TTTC-TCGAAC-CGAGCGA--G-GTGTGAA---------AAACT--CTT-T-GAAGC-TTTATA-A-----TG--C-CG-CGT--AG-TAAC--AGGC----CCGAGCAT-G-ATAA-----AC-GAAATGGTGACTAAC---AAAA---TTGAG-TG-ACTTTGAGAAATACAATATAATTG-T-TGCAAA-TG-A-G-A-TTAATTAT-AAATTAGG-AT-G----GT-T-G---ATAAA-TAAT-TT-GAT--TTTTTTTA-T-ACGAAAGA-G-AGAAAGGG-TAGC-ACT-ATT--CTTAATT-GATGAGA-ACT--ATATTAT--GTTTATGCGC--CACATAGCATTTACT-TG-TTGTG---AAAT--AAGA-CGT-TAGAAAATAATTGA-C--AA-AA-TAT-AC-ATCAG--C-TTAATGAATTAATAAT-A----GTTGTTTT--ATTGGATGG---ACTA-------------CCAATTTTC--AAGTCAGA-A--TTGAA--T-TATAGAAAGAGAa
gi|17 : gcgtctatgcaatcgcagaaatgaatcactctttgtgactgcaaaggagaCTTCACTG--AG-TTA-A-A--CGTA-AAA-AAAACCC-GC-ATCAAAA-TCGG--C--G----C
gi|10 : agcatctatgcaatgcaaaaatattttattgtgactgcaaaggatgttTA----------TCGATCC-CG-T-AA-TA-TG-GCTATT-TTTA------------CC--TGCT---------------T--TC----AA-AA--T-CC-AAT-C---AA-GC-----AAAAATAG---A-AACGACCGAAAA---A--------------------TC-TC-TG-ACG-TCACATCGGCAACAA-A-TA--TGGT-----------GG-CTAG-TATAGAA-TAC-ATA-GGCA-G--TT-ACAG---C--CTT--T----AACA-C-AGT-AGTTTA--TG-CG-TTG-A-T-GCAAGC-C-TTGTTTC--ATCCG-AT-T-CA-AA-C--GTAT---------TTAACA-------ATTCT-AATATTCGAATT-A-G-GCCTA--C-GAC
gi|8 : GAATTTA-GCGTCAA--C-AACCGCA--TCTTTT-TATGTCGG-AAGGCTAGC-TAA-TCCG-TG-TCGTATATCCAGAGACATA-TA-TC--TTGTCAA-TTTCGTGT--CTCGAGCGA--G-GTGTGAACATGGTGAAAAACTT-TTT-T-GATTC-TTTATA-AT------A-T-CG-CGTCAG--T-AC--A--C----C--AGCATTG-AT-A-----AC-GAAATGGT-AATAGA---AAAA---TT-----G-ACTTT-GAA--TAC-A-AT-ATTG-T--GCAAA-TG-A-G-A-TTG----T-AAGTTATG-AT-GG---GT-T-CGTGATAAA-TA---TT-GA---TTTTTTTT-T-ACG-AA-A-G-AGAAA--G-TAG-GACTGATTCAGTTGAAT-GATGA-A-ACT--AGATTTATGGTTT-TGCAC--TA-----TATTTA-T-TG-TTGCG---AAA---AAGA-CGT-G-AAAAATGATTGACC--AT-AA-T-T-ACAACCAG----TT-ATGAATT-ATAAA-G----GTTG-CTGTGATTA---GG---A--ATAAAGTACGACAGATAA-TTTC--AA--CAGACA--TCGAA----T-TAG-AAGAGAaaagttatctaagtatcagtgtctagtctgtgt
gi|15 : -TATGTCTG-A-GGCTAGC-TAA-TCCG-TG-T---------------ATA-TA-TC--TTGTCAA-CCTCGTGT--CTCGAGCAA--G-GTGTGAA--------GAAACTTTTTT-C-GATGC-TTTATA-AT------A-C-CG-TGT--AG-T-AC--A--C----C--Aa
gi|21 : ctttttacatgTAGA---AAAA---TT-AT--G-ACTTT--AAAATAC-ATAT-ATTG-T-TGCAAA-T
gi|11 : TGAAAT-AC-ATAC-ATTG-T-TGCAA--TG-AAG-A-TTA---AT-AAATTATG-AG-GT--TGT-G-----ATAAA-TAA--TTTGA---TTTTTTTA-T-ACG-AA-A-G-AGAAA--G----CGACT-ATTC--TTGAAT-GATGA-A-ACT--ATATTAT-GGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-G-AAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT-AG---GTTG-TTGTGATTA---GG------A-------------ATAA-TTCC--AA--CAGACA--TTGAA--T-T-TAGAAAGAGA
gi|18 : ttagGAAA--A--AGCGACT-A---CCTTAAAA-GA-GA-A-TC---ATAT-ATGAATTT-TAC-CGGTA-----CATTTA-TGTG-CTGCG---AAAT--Aa
gi|16 : tacaaat-TTTCG---AAAT--AAGA-CGT-GAAAA-ATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT-AG---GTTG-TTGTGATTA---GG------A-------------ACAA-TTTC--AA--CAGACA---TGAA--T-T-TAGAAAGAGAcacgt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TAAAGGGTCTATGGAATGAAATTATATTTTATTGTGATAGCAAAGGATTTTCTTCACTGAGTT
Unaligned ( gi|20 ): GGATTTCGATGCCAAATGGAATATCGTTTAATTGTGATTGCAAAGGTTTTCTCACTGA
Alignments
lowQualScore : 22222 1 1111111111 111 11111 1111111 1111 11 11 1111 111 11111 22222222222 1111111 333333333333333 2222 22222222 1 44444444444 111111 11111 1 22222 11 111 333333333333 11 111 1 222 11 11111 1111 44444444444444444444 1111 1111
lowQualScore : 1 44 3 3 3 44 3 3 00000 3 3 3 6 44 44 7777 0 3 55 4 4444444444 3 3 3 3 3 3 3 55 55 8888 4 66 8 4 333 4 11111 777 4 4 4 1111111 8 3333 55 4 4 4 4 4 777 4 0 22 5555 4 222 66 4 4 4 4 4 4 66 4 999 77777 4 4 4 66 55 4 4 8 4 4 4 66 4 4 4 4 6666 22222222222 1 6666666 5 5 4 4 4 66 4 5 3 4 4 4 4 4 4 222222222222222 4 4 66 3 4 9999 66 4 22222222 3 4 4 4 8 44444444444 4 4 4 4 4 66 777 000000 555 77777 5 5 0 777 777 00000 4 1 8 44 4 4 4 4 4 4 4 4 4 222 4 4 000000000000 4 00 8 4 1 4 4 77 4 4 8 000 2 4 4 111 4 4 4 55 33 4 99 00000 8 4 3 666 55 4 4 5 1 4 66 4 8 4 4 4 2222 8 8 9999 1 4 4 777 00000000000000000000 4 66 66 1111 1111 4
lowQualScore : . .. . . . .. . . ..... . . . . .. .. .... . . .. . .......... . . . . . . . .. .. .... . .. . . ... . ..... ... . . . ....... . .... .. . . . . . ... . . .. .... . ... .. . . . . . . .. . ... ..... . . . .. .. . . . . . . .. . . . . .... ........... . ....... . . . . . .. . . . . . . . . . ............... . . .. . . .... .. . ........ . . . . . ........... . . . . . .. ... ...... ... ..... . . . ... ... ..... . . . .. . . . . . . . . . ... . . ............ . .. . . . . . .. . . . ... . . . ... . . . .. .. . .. ..... . . . ... .. . . . . . .. . . . . . .... . . .... . . . ... .................... . .. .. .... .... .
lowQualScore : 0 66 3 3 3 66 3 3 66666 3 3 3 7 66 66 1111 9 6 00 4 6666666666 3 3 3 3 3 3 6 00 00 5555 4 11 9 4 999 4 11111 888 4 4 4 1111111 9 0000 00 4 4 4 4 4 888 4 1 88 9999 4 222 11 4 4 4 4 4 4 11 4 000 77777 4 4 8 11 66 4 4 9 4 4 4 11 4 4 4 4 9999 44444444444 0 2222222 0 0 4 4 4 11 4 0 2 4 4 4 4 4 4 222222222222222 4 4 11 6 4 3333 11 4 22222222 0 4 4 4 9 77777777777 4 4 4 4 4 11 888 333333 111 55555 0 0 5 888 888 00000 4 9 1 44 0 0 0 0 0 4 4 4 4 222 4 4 777777777777 4 66 9 4 9 4 4 66 4 4 9 333 0 0 0 222 0 0 0 55 99 0 55 00000 0 0 6 444 00 0 0 7 9 4 11 4 9 4 4 4 3333 9 9 7777 1 4 4 888 00000000000000000000 4 11 11 4444 4444 4
consensus : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GCA-T-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGA-CC-GAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-A--GTATA--------TGGACNA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGTGAAC-CGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TTTATA-AT-----G----NCCG-C-GT-AG-TA-C--A---CC-A----GCAT-G-ATAA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTACA-TATA-TTG-T-TGCAAA-TG-A-G-ATT-AAT---AAATTATG-AT-GG--T-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAAG--TAGCGACT-A-T-TC-C-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TACAT-----TTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
Reference ( family-1858 ) : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GCA-T-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGA-CC-GAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-A--GTATA--------TGGACNA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGTGNACTCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TTTATA-ATT----G----NCCG-C-GT-AG-TA-C--A---CC-A----GCAT-G-ATAA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTACA-TATA-TTG-T-TGCAAA-TG-A-G-ATT-AAT---AAATTATG-AT-GG--T-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAAG--TAGCGACT-A-T-TC-C-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TACAT-----TTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
gi|1 : TTACGTCACTGCAGG-TTA-A-AGGCGTA-CAA-AACGA--GC-G-A-T-CAAAA-TCGG--CCGG----AAG-AA-AT--AACAGAGTTATTATTTTTTTTTGATCCGCGTT-AA-TG-T---CTTTT-TTTATT--TTTTT--T
gi|1 : gcgtctatgcaatcgcagaaatgaatcactctttgtgactgcaaaggagaT-TTTACC--T--TT--TC----AA-AA--TCCCAAT-C---GA-GC-----AAAAAT---AGA-AACGA-CC-GGAAA--CAGATGG-GTCA--G-TGTCATTCGT-G-TG-A----------GA-AAT-TCATAAGTTG--AGA---GCGGGAC-TACATATGGGA-GACTATA-TACA-G--TT-TCT-G-CTTTTCAT--AAACAAGTC-GTTAAACTGAGAG-TGTG-T-GGAAGC-C-TTGTTTCATGTCCGA-TGT-CA-GACA--TTATA--------TG-ACAA-------TTC-TAATA--CGAATT-A----TCAAACT-AACCGCACATCTTTT-TATGT-TG-A-G-CTAGCTTAA-TCCG-TGTT--------------GTGT-ATTC--TTGTCAATTT-CTCGAAC-CGAGCGA--G-GTGTGAA---------AAACTC--TT-T-GAAGC-TTTATA-AT----------GCCG-C-GT-AG-TAAC--AGGCCCGA----GCAT-G-ATAAA----C-GAAATGGTGACTAACAA---AA---TTGAG-TG-ACTTTGAGAAATACAATATAATTG-T-TGCAAA-TG-A-G-ATT-AATTATAAATTAGG-AT-GG--T-----T---GATAAA-TAA--TTTG-ATTTTTTT-TA-TACGAAAGA-G-AGAAAGGGTAGC-ACT-A-T-TC---TTAATT-GATGAGA-ACT--ATATTAT--GTTTATGCGC--CACATAGCATTTACT-TG-TTGTG---AAAT--AAGA-CGT-TAGAAAATAATTGA-C--AA-AA-TAT-AC-ATCAG--C-TTAATGAATTAATAAT---A-GTTG-TTTT--ATTGGATGG---ACTA-------------CCAATTTTC--AAGTCAGA--A--TTGAA--T-TATAGAAAGAGAattttttgtttacgcattttaccttttcaaaatcccaatcgagcaaaaatagaaacgaccggaaacagatgggtcagtgtcattcgtgtgagaaattcataagttgagagcgggactacatatgggagactatatacagtttctgcttttcataaacaagtcgttaaactgagagtgtgtggaagccttgtttcatgtccgatgtcagacattatatgacaattctaatacgaattatcaaactaaccgcacatctttttatgttgagctagcttaatccgtgttgtgtattcttgtcaatttctcgaaccgagcgaggtgtgaaaaactctttgaagctttataatgccgcgtagtaacaggcccgagcatgataaacgaaatggtgactaacaaaattgagtgactttgagaaatacaatataattgttgcaaatgagattaattataaattaggatggttgataaataatttgattttttttatacgaaagagagaaagggtagcactattcttaattgatgagaactatattatgtttatgcgccacatagcatttacttgttgtgaaataagacgttagaaaataattgacaaaatatacatcagcttaatgaattaataatagttgttttattggatggactaccaattttcaagtcagaattgaattatagaaagaga
gi|10 : gcgtctatgcaatcgcagaaatgaatcactctttgtgactgcaaaggagattacgtcactgcaggttaaaggcgtacaaaacgagcgatcaaaatcggccggaagaaataacagagttattatttttttttgatccgcgttaatgtctttttttattttttttattttttgtttacgcaTA----------TCGATCC-CG-T-AA-TA-TG-GCTATT-TTTACC--TGCTT--TC----AA-AA--TCC-AAT-C---AA-GC-----AAAAAT---AGA-AACGA-CC-GAAAA--------A---------------TC-T-C-TG-ACG-TCACATCGGCAACAAA-TA--TGGT---------G--GC-TAG-TATAGAA-TAC-ATA-GGCA-G--TT-ACA-G-CCTTT--A--ACACA-GTA-GTTTA--TG-CGT-TG-A-T-GCAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-C--GTAT---------TTAACAA-------TTC-TAATATTCGAATT-AG-G-CCTA--C-GAC
gi|11 : TGAAAT-ACA-TACA-TTG-T-TGCAA--TG-AAG-ATT-AAT---AAATTATG-AG-GT--T-GT------GATAAA-TAA--TTTG-ATTTTTTT--A-TACG-AA-A-G-AGAAAG-----CGACT-A-T-TC---TTGAAT-GATGA-A-ACT--ATATTAT-GGTTT-TGCAC--TACAT-----TTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAA-ATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTGT-GATTA---GG------A-------------ATAA-TTCC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGAaaagttatctaagtatcagtgtctagtctgtgt
gi|12 : ttagATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AA--A--CC-GCA-TCCAAAATTCGG--C--G----CAGAAA-AT--TACAG-GTTA----------TTGAT-C-CG-T-AA-TG-TG-Ga
gi|13 : aagggactatgcaatgaagaattaaatttattgtgattgccaaaggATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AA-----CC-GCA-T-CAAAA-TCGG--C--G----CAG-AA-AT--TACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-Gaaattacattatttaatattatttctagtcacttcataaaaattatccaa
gi|14 : aagggactatgcaatggaagaataatttattgtgattgcaaaggATTTTCTTCATTG--AA-TTA-A-A--CGTA-TAA-AA-----TC-GCA-T-CAAAA-TCGT--C--A----CAG-AA-AT--AACAAAGTTA----------TCGATAC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----Aaaattacattatttaatatattctagtcactcataaaatatccaa
gi|15 : aaagggtctatgcaatgatatggcattttattgtgattgcaaagg-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------ATAT-AT-C--TTGTCAACCT-CGTGT-CTCGAGCAA--G-GTGTGAA--------GAAACTTTTTT-C-GATGC-TTTATA-AT----------ACCG-T-GT-AG-TA-C--A---CC-A----
gi|16 : ctttttacatg-TTTCG---AAAT--AAGA-CGT-GAAAA-ATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTGT-GATTA---GG------A-------------ACAA-TTTC--AA--CAGAC-A---TGAA--T-T-TAGAAAGAGA
gi|17 : ATGTTCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--AACCC-GCA-T-CAAAA-TCGG--C--G----Ca
gi|18 : agcatctatgcaatgcaaaaatattttattgtgactgcaaaggGAAAA---AGCGACT-A----C-C-TTAAAA-GA-GA-A-TC---ATAT-ATGAATTT-TAC-CGGTACAT-----TTA-TGTG-CTGCG---AAAT--A
gi|2 : tacaaatTCTACTTC-CTG--AG-TTACACA--CGTA-AAA-AA-----CC-GCA-T-CAAA--TCG---C--G----CAG-AA-A---AACAGAGTTA----------T-GATTC-CG-TTAACTG-TG--CT-TT-TTAACC--TGTTT--TTTTCAAA-AA--TCCTAAT-CCG-GATGC-----AAAAAT---AGA-AACGAACC-GAAAAACC----GAAGGCA--T-TTT--T-C-T-G-TG-AC--TCA---TGG-AATGTCCTA--T-GT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATATGACACG--TTATCTTG-CTTTT-----AAGCA-GTCCGTTAA--TG--AG-TG-A-TTGGGAGCTC-TTGTTTCTC--CCGAAT-T-CA-GA-ACTGTATAACGTTAAATGCACTACAACTGATTC-TA-TA-TCGAATT-AG-GGTCA---C-AGCGCCA-ATCTTTT--ATGTCTG-A-GGCTAGC--AA-TCCG-TGT---------------GTATTAT-T--TTGTCAATTTTCGTGAAC-CGAGTGA--G-GTGTGAACG------AAAACTCATTT-T-TGAGC-ATCATA-ATTATATG----CCCATC-GT-AG-TA-C--A---CC-ACTCAGCA--A-ATAAGGATAC-GAAATGGTGATTAGAAATAAAA---AG-AT--G-ACTTTTGAAAT-ACA-TA-A-TTG-TATGCAAA-TG-A-G-ATTTAATG--AAATT-TG-AT-GG--TTGT--G---AATAAT-TAACTTT-G-ATTTTTTTATA--ACGAAA-ACGTAGAAAG--TAGCGACTCA-T-TC-A-T-GAAT-GATGA-A-ACTCAATATTATGGTTTT-TGCAC--TACAT-----TTA-T-TG-TTGCGCAAAAAT--AAGA-CGT-GAAAAATAAATTGA-TCAATAAA-T-T-AC-ATCAG--C-TTAATGAATT-A-AAT---GGGTTG-TTTTCGATTA---AGGCCG--A-------------ACAA-TTTC--AA--CAGAC-ATCTTGAA--TCT-TAGAAAGAGAcacgt
gi|21 : gtctatcaatgcaaaaattctttattgtgactgcaaaggatTAGAAA---AA---TT-AT--G-ACTTT--AAAATACA-TATA-TTG-T-TGCAAA-Ta
gi|3 : ATTTACTTCAC-G--AG-TTA-A-A--CGTC-AAA-AA--A--CCTGCA-T--AAAA-TCCG--T--GTCGCCAG-ATTATCAGACAGAGTTA----------TTGATCC--G-T-AA-TGCTGAGCTAAT-TTTACCACTGTTTCTTC----AA-AAAATCC-AAT-TCAAGA-GCTTTCCAAAAAT---AGA-AACGA-C--GAAAA--C----GA-GGCAATT-TTTA-TTC-T-G-TG-ACGCTCA---TGG-AATCT--TA--T-GT-A-A---GCG--AC-TAC-TATGAGA-T-C-ATA---CA-T--TT-TCT-G-CTTTT--TA-AAACA-GTC-GTTAA--T---AG-TG-ATT-GGAAGC-C-TTGTTTCTT--CCGA-T-T-CA-AA-A--GTATA--------CTGACTA-------TTCTTAATA-C--AATT-AG-G-TCAA--C--ACCGCA-ATC--TT-TATGTCGA-A-GGCTAGCT-AA-TCCG-TGG---------------GTAT-AT-CTATTGTAAA-TT-CGTGAA--CGAGCAA--GCGTG-GAA--------GAAAC-TCTTT-G-GAAGC-TTTATATAAT----G----CCTG-C-GT--G-TA-CATA---CC-A----GCAT-GAATAA-----CGGAAATGGT--ATAGAAA---AA---TT-A--TG-AC-TTTGAAAT--CA-T-TA-TT--T-TGCAAATTG-A-G-ATT-AAT---AAATTAT--AT-GGGTT-GTG-T---GATAAA-TAT--TT-G-A-TTTTTT-TA-TACGAAA-G-GAAGAAAG--TAGCGGATAA-TATA-C-TTGAAT-GATGA-AGATT--ATATTA-TGGTTT-TGCACG-TACAT-----TAT-T-TG-TTGCG---AAATTAAAGA-CGT-G--AAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATGAATG-ATAA----AGGGTG-TTTT-GATTA---GG------A-------------ACAA-TTTC--AA--CAGACAA--TTGAAT-T-T-TAGAAAGAGA
gi|4 : gcggtctatggcaatgcacaaaaatattctatttgcgcaaaggaTTTACTTCACTG--AGGTTA-A-A--CGTA-AAA-AA--A--CC-GCA-T-CAAAAATCGG--C--G----CAGGAA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TT-AC---TGTTT--TC----AA-AA--TCC-AATTC---GA-GC-----AAAAAT---AGA-AACGA-CC-GAAAA--C----GA-GGCAAAT-TTT--TTC-TTG-T--ACG-TCA---TGG-AATGTC-TA--TCGT-AGAA--GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-GTTTTTT--T--AAACA-GTC-GTT-A--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CC-AA-A--GTATA--------T-GACTA-------TTC-T-ATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTTATTTGTCTGCG-GGCTAGCT-AACTCCG-TGT---------------GTAT-AT-C--TTGTCAA-TT-CGTGAA--CGAGCAA--G-GTGTGAA--------GAA----CTCTGT-GAAGC-TTTATACAT----------GCCG-CGGT-AG-TA-C--A---CC------GCAT-G-ATAA-----C-GGAATGGTGATTAGAAA---AAATTTT-AT-TGTACTTTTGAAATACCA-TATA-TTG-T-TGCAAA-TG-A-GCATT-AAT---AAATTATG-AT-GGGTT-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TAC-GAA-A-G-AGAAAGT-TAG-GACT-A-T-TC----TGAAT-GATGA-A-ACT--ATATTA-TGGTTT-TGCAC--TACAT-----TTATT-TG-TTGCG---AAAT--AAGA-CGTGGAAAAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATGATTT-ATAATAAAAGGTTG--TTT-GATTT---AG---G--A-------------ACA---TTC--AA--CAGAC----TTGAATTT-T-TAGAAAGAGA
gi|5 : ctctatgcaatggaaaaaatttttatttgactgcaaaggatATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AA------C-GCA-T-CAAAA-TCGG--C--G----CA--AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTA-T-TTTACC--TG-TT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAATAAGAAA-AACGA-CC--AAAA--C----GA-GGCA--T-TTT--TTC-T-G-TGAACG-TCA---T-G-AATGTC-TA---TGT-AGA---GCG--GCTTAC-TATGGGA-GAC-ATA-GACA-G--TT-T-T-G-C-TTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T--GAAGC-CTTTGTTTCAT--CCGA-T-T-CAGAA-A--GTATA--------T-GACAA--------TC-TAATA-TCGAATT-AG-G--CAA--CAAACCGCA-ATC-TTT-TATGTCTG-A-GGCTAGCT-AA-TCCGTTGT---------------GTAT-AT-C--TTGTCAATTT--GTTAA--CGAGCGAGCG-GTGTGAA--------G-AACTCTTTT-TAAAAGCTTTTATA-A------GACGTACCG-C-GT-AGTTA-C--A---CC-A----GCAT-G-ATAA-----C-GAAATGGT-AATAGAAA---AA---TT-TTATG-ACTTT--AAATACCA-TATA-TTGTT-TGCAAA-TGCA-G-A-T-AAT---AAA-TATGAAT-GG----GTTGT---GATAAATTAA--TT-G-ATTTTTTT-TATTACGG-A-A-G-A-AAAG--TAGCGGAC-A-T-TCTT-TTGAATGGATGA-A-ACT--ATATTATTTGTTT-TGCAC--TACAT-----CTA-T-TGCTTG-G---AAAT--AAGACCGT-G-AAAAATAA-TGA-C--AT-AA-T-TAAC-ATCAGGCT-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TGTCCAAA--CAGAC-A--TTGAA--T-T-TAGGAAGAGAa
gi|6 : cggtctatgccaatgcaaaaatatttatttgtgactgaaaggATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GCAAT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAG-GTTA----------CTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGA-CCCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AT-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT----TTTT--T--AAACA-GTC-GTTAA--TG-GAT-TG-A-T-GGAAGC-C-TTGTTTCGT--CCGA-T-T-CA-AA-A--GTATA--------TGGACTA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTAAATTT-CGTGGAACCGAGCAA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TTTATA-ATT----G----CCCG-C-GT-A--TA-C--A---CC-A----GCAT-G-ATAA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTACA-TATA-TTG-T-TGCAAA-TG-A-G-ATT-AAT---AAATTATG-AT-GG--T-GT--T---TATAAA-TAA--TT-G-A-TTTTTT-TA-TACGGAA-A-G-AGAAAG--TAGCGACT-ATT-TC-T-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TACAT-----TTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATTGATAAT---A-GTTGTTTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-AT-TTGAA--T-T-TAGAAAGAGA
gi|7 : ATTTTCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA-----CC-GCA-T-CCAAA-TCGG--C--G----CAG-AA-AT--AACAG--TTA----------TTGTTCC-CG-T-AA-TG-TG-GCAATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GT-----AAAAAT---AGA-AATGA-CC-GAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TAG-AATGTC-TA---TGT-AGA---GCG--GC-TTC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-A-CTTTT--C--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GAAAGC-C-TTGTTTCAT--CCGA-T-T-CA-GA-A--GTATA--------T-GACAA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AAATGCA-ATCTTTT-TATGTCTG-G-GGCTAGCT-AA-TCTG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGTGT-CTCGAGCGA--G-GTGTGAA--------GAAACTT-TTT-T-GATGC-TTTATA-AT----------ACCG-C-GT-AG-TA-C--A---CC-A----GCAT-T-ATAA-----C-GAAATGGT-AATAGAAA---AA---TT-A--TG-AC-TTTGAAA-TACA-TCTA-TTG-T-TGC-AA-T----A-ATT-GAT---AAATTATG-ATAGG--T-TG--T---GATAAA-TAAT-TT-GCATTTTTTT-TA-TAC-GAA-A-G-AGAAAG--TAGCGACT-A-T-T--C-TTGAAT-G-TGA-A-ACT--ATATTA-TGGTTT-TGCAC--TACAT-----TTA-T-TG-TT--A---AAAT---AGA-TAT-AAAAA
gi|8 : aaagggtctatgcaatgcaaaaatattttattgtgactgcaaaggGAATTTAGCG-TCAA--C-AACCGCA--TCTTTT-TATGTCGG-AAGGCTAGCT-AA-TCCG-TGTCGTATATCCAGAGACATAT-AT-C--TTGTCAATTT-CGTGT-CTCGAGCGA--G-GTGTGAACATGGTGAAAAACTT-TTT-T-GATTC-TTTATA-AT----------ATCG-C-GTCAG-TA-C--A---CC-A----GCATTG-ATAA-----C-GAAATGGT-AATAGAAA---AA---TT-----G-ACTTT-GAA--TACA--ATA-TTG-T--GCAAA-TG-A-G-ATT-G-T---AAGTTATG-AT-GG----GT--TCGTGATAAA-TA---TT-G-ATTTTTTT-T--TACG-AA-A-G-AGAAAG--TAG-GACTGA-T-TC-AGTTGAAT-GATGA-A-ACT--AGATTTATGGTTT-TGCAC--TATAT-----TTA-T-TG-TTGCG---AAA---AAGA-CGT-G-AAAAATGATTGACC--AT-AA-T-T-ACAACCAG----TT-ATGAATT-ATAA----AGGTTG-CTGT-GATTA---GG---A--ATAAAGTACGACAGATAA-TTTC--AA--CAGAC-A--TCGAA----T-TAG-AAGAGA
gi|9 : ATTTTCGTTACTG--AG-TTA-A-A--CGTATAAACAA--A--CC-GCA-T-CAAAA-TCGGATC--G----CAGGAA-AT--AACAGAGT-A----------TTGATCC-CG-T--A-TG-TG-GCTATTCTTTACC--TGTTT--TC----AAGAA--TCC--AT-C----A-GC-----AAAAAT---AGAGAACGA-CC-G-AAA--C----AACGGCA--TATTTA-TTC-T-GCTG-ACG-TCA---TGG-AATGT--TA--CTGTCAGACGGGCT--AC-TCC-T-CGCGACGCC-ATA-GAC--GCTTT-TCT-T-CTTTC--TTAAAACA-GTC-ATC-A--TG-GAGCTG-ACT-GGAAGC-C-TTGTTTCAT--CCGA-T-CACG-AA-C--GTATA--------TGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAAAGGGTCTATGGAATGAAATTATATTTTATTGTGATAGCAAAGGATTTTCTTCACTGAGTT
Unaligned ( gi|20 ): GGATTTCGATGCCAAATGGAATATCGTTTAATTGTGATTGCAAAGGTTTTCTCACTGA
Alignments
lowQualScore : 22222 1 1111111111 111 11111 1111111 1111 11 11 1111 111 11111 22222222222 1111111 333333333333333 1 22222222 11 11 22222222 1111111 11111 1 22222 11 222222222222 11 1111111111 11 11111 1111 44444444444444444444 1111 1111
lowQualScore : 1 44 3 3 3 44 3 3 00000 3 3 3 6 44 44 7777 0 3 55 4 4444444444 3 3 3 3 3 3 3 55 55 8888 4 66 8 4 333 4 11111 777 4 8 1111111 8 3333 55 4 4 4 4 4 777 4 0 22 5555 4 222 66 4 4 4 4 4 4 66 4 999 77777 4 4 4 66 55 4 4 8 4 4 4 66 4 4 4 4 6666 22222222222 1 6666666 5 5 4 4 4 66 4 5 3 4 4 4 4 4 4 222222222222222 4 4 66 3 4 4 2 66 4 22222222 22 4 4 4 66 00 4 88888888 4 4 4 4 4 66 66 2222222 555 5 22222 5 5 0 777 777 00000 4 1 8 44 4 4 4 4 4 4 4 4 4 777 4 4 4 555555555555 4 55 4 4 1 4 4 77 4 4 8 55 44 9999999999 4 4 4 55 33 4 99 00000 8 4 3 666 55 4 4 5 1 4 66 4 8 4 4 4 2222 8 8 9999 1 4 4 777 00000000000000000000 4 66 66 1111 1111 4
lowQualScore : . .. . . . .. . . ..... . . . . .. .. .... . . .. . .......... . . . . . . . .. .. .... . .. . . ... . ..... ... . . ....... . .... .. . . . . . ... . . .. .... . ... .. . . . . . . .. . ... ..... . . . .. .. . . . . . . .. . . . . .... ........... . ....... . . . . . .. . . . . . . . . . ............... . . .. . . . . .. . ........ .. . . . .. .. . ........ . . . . . .. .. ....... ... . ..... . . . ... ... ..... . . . .. . . . . . . . . . ... . . . ............ . .. . . . . . .. . . . .. .. .......... . . . .. .. . .. ..... . . . ... .. . . . . . .. . . . . . .... . . .... . . . ... .................... . .. .. .... .... .
lowQualScore : 0 66 3 3 3 66 3 3 66666 3 3 3 7 66 66 1111 9 6 00 4 6666666666 3 3 3 3 3 3 6 00 00 5555 4 11 9 4 999 4 11111 888 4 9 1111111 9 0000 00 4 4 4 4 4 888 4 1 88 9999 4 222 11 4 4 4 4 4 4 11 4 000 77777 4 4 8 11 66 4 4 9 4 4 4 11 4 4 4 4 9999 44444444444 0 2222222 0 0 4 4 4 11 4 0 2 4 4 4 4 4 4 222222222222222 4 4 11 6 4 4 0 11 4 22222222 77 4 4 4 11 66 4 11111111 4 4 4 4 4 11 11 0000000 111 0 55555 0 0 5 888 888 00000 4 9 1 44 0 0 0 0 0 4 4 4 4 888 4 4 4 111111111111 4 00 4 4 9 4 4 66 4 4 9 55 88 0000000000 0 0 0 55 99 0 55 00000 0 0 6 444 00 0 0 7 9 4 11 4 9 4 4 4 3333 9 9 7777 1 4 4 888 00000000000000000000 4 11 11 4444 4444 4
consensus : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GC-AT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGA-CCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-A--GTATA--------TGGACNA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGT-GAACCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--A-T-----G-NCCG-C-GT-AG-T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTAC-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-AT-GG--T-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCGACT-A-T-TC-C-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
Reference ( family-1858 ) : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GC-AT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGA-CCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-A--GTATA--------TGGACNA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGT-GAACCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--A-T-----G-NCCG-C-GT-AG-T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTAC-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-AT-GG--T-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCGACT-A-T-TC-C-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
gi|1 : TTACGTCACTGCAGG-TTA-A-AGGCGTA-CAA-AACGA--GC-G--AT-CAAAA-TCGG--CCGG----AAG-AA-AT--AACAGAGTTATTATTTTTTTTTGATCCGCGTT-AA-TG-T---CTTTT-TTTATT--TTTTT--T
gi|1 : gcgtctatgcaatcgcagaaatgaatcactctttgtgactgcaaaggagaT-TTTACC--T--TT--TC----AA-AA--TCCCAAT-C---GA-GC-----AAAAAT---AGA-AACGA-CCGGAAA--CAGATGG-GTCA--G-TGTCATTCGT-G-TG-A----------GA-AAT-TCATAAGTTG--AGA---GCGGGAC-TACATATGGGA-GACTATA-TACA-G--TT-TCT-G-CTTTTCAT--AAACAAGTC-GTTAAACTGAGAG-TGTG-T-GGAAGC-C-TTGTTTCATGTCCGA-TGT-CA-GACA--TTATA--------TG-ACAA-------TTC-TAATA--CGAATT-A----TCAAACT-AACCGCACATCTTTT-TATGT-TG-A-G-CTAGCTTAA-TCCG-TGTT--------------GTGT-ATTC--TTGTCAATTT-CTC-GAACCGAGCGA--G-GTGTGAA---------AAACT--CTT-T-GAAGC-TT--TATA--A-T-----G--CCG-C-GT-AG-TAAC--AGGCCCGA----GCAT-G-ATAAA-----C-GAAATGGTGACTAACAA---AA---TTGAG-TG-ACTTTGAGAAATACAATATAATTG-T-TGCAAA-TG-A-G-ATT-AATTAT-AAATTAGG-AT-G-----GT--T---GATAAA-TAAT-TT-G-ATTTTTTT-TA-TACGAAAGA-G-AGAAAGGG-TAGC-ACT-A-T-T--C-TTAATT-GATGAGA-ACT--ATATTAT--GTTTATGCGC--CACATAGCATTTACT-TG-TTGTG---AAAT--AAGA-CGT-TAGAAAATAATTGA-C--AA-AA-TAT-AC-ATCAG--C-TTAATGAATTAATAAT---A-GTTG-TTTT--ATTGGATGG---ACTA-------------CCAATTTTC--AAGTCAGA--A--TTGAA--T-TATAGAAAGAGAattttttgtttacgcattttaccttttcaaaatcccaatcgagcaaaaatagaaacgaccggaaacagatgggtcagtgtcattcgtgtgagaaattcataagttgagagcgggactacatatgggagactatatacagtttctgcttttcataaacaagtcgttaaactgagagtgtgtggaagccttgtttcatgtccgatgtcagacattatatgacaattctaatacgaattatcaaactaaccgcacatctttttatgttgagctagcttaatccgtgttgtgtattcttgtcaatttctcgaaccgagcgaggtgtgaaaaactctttgaagctttataatgccgcgtagtaacaggcccgagcatgataaacgaaatggtgactaacaaaattgagtgactttgagaaatacaatataattgttgcaaatgagattaattataaattaggatggttgataaataatttgattttttttatacgaaagagagaaagggtagcactattcttaattgatgagaactatattatgtttatgcgccacatagcatttacttgttgtgaaataagacgttagaaaataattgacaaaatatacatcagcttaatgaattaataatagttgttttattggatggactaccaattttcaagtcagaattgaattatagaaagaga
gi|10 : gcgtctatgcaatcgcagaaatgaatcactctttgtgactgcaaaggagattacgtcactgcaggttaaaggcgtacaaaacgagcgatcaaaatcggccggaagaaataacagagttattatttttttttgatccgcgttaatgtctttttttattttttttattttttgtttacgcaTA----------TCGATCC-CG-T-AA-TA-TG-GCTATT-TTTACC--TGCTT--TC----AA-AA--TCC-AAT-C---AA-GC-----AAAAAT---AGA-AACGA-CCGAAAA--------A---------------TC-T-C-TG-ACG-TCACATCGGCAACAAA-TA--TGGT---------G--GC-TAG-TATAGAA-TAC-ATA-GGCA-G--TT-ACA-G-CCTTT--A--ACACA-GTA-GTTTA--TG-CGT-TG-A-T-GCAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-C--GTAT---------TTAACAA-------TTC-TAATATTCGAATT-AG-G-CCTA--C-GAC
gi|11 : TGAAAT-AC-ATAC-ATTG-T-TGCAA--TG-AAG-ATT-A---AT-AAATTATG-AG-GT--T-GT------GATAAA-TAA--TTTG-ATTTTTTT--A-TACG-AA-A-G-AGAAA--G----CGACT-A-T-TC---TTGAAT-GATGA-A-ACT--ATATTAT-GGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAA-ATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTGT-GATTA---GG------A-------------ATAA-TTCC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGAaaagttatctaagtatcagtgtctagtctgtgt
gi|12 : ttagATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AA--A--CC-GC-ATCCAAAATTCGG--C--G----CAGAAA-AT--TACAG-GTTA----------TTGAT-C-CG-T-AA-TG-TG-Ga
gi|13 : aagggactatgcaatgaagaattaaatttattgtgattgccaaaggATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AA-----CC-GC-AT-CAAAA-TCGG--C--G----CAG-AA-AT--TACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-Gaaattacattatttaatattatttctagtcacttcataaaaattatccaa
gi|14 : aagggactatgcaatggaagaataatttattgtgattgcaaaggATTTTCTTCATTG--AA-TTA-A-A--CGTA-TAA-AA-----TC-GC-AT-CAAAA-TCGT--C--A----CAG-AA-AT--AACAAAGTTA----------TCGATAC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----Aaaattacattatttaatatattctagtcactcataaaatatccaa
gi|15 : aaagggtctatgcaatgatatggcattttattgtgattgcaaagg-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------ATAT-AT-C--TTGTCAACCT-CGT-GTCTCGAGCAA--G-GTGTGAA--------GAAACTTTTTT-C-GATGC-TT--TATA--A-T-------ACCG-T-GT-AG-T-AC--A--CC--A----
gi|16 : ctttttacatg-TTTCG---AAAT--AAGA-CGT-GAAAA-ATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTGT-GATTA---GG------A-------------ACAA-TTTC--AA--CAGAC-A---TGAA--T-T-TAGAAAGAGA
gi|17 : ATGTTCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--AACCC-GC-AT-CAAAA-TCGG--C--G----Ca
gi|18 : agcatctatgcaatgcaaaaatattttattgtgactgcaaaggGAAA--A--AGCGACT-A----C-C-TTAAAA-GA-GA-A-TC---ATAT-ATGAATTT-TAC-CGGTA-----CATTTA-TGTG-CTGCG---AAAT--A
gi|2 : tacaaatTCTACTTC-CTG--AG-TTACACA--CGTA-AAA-AA-----CC-GC-AT-CAAA--TCG---C--G----CAG-AA-A---AACAGAGTTA----------T-GATTC-CG-TTAACTG-TG--CT-TT-TTAACC--TGTTT--TTTTCAAA-AA--TCCTAAT-CCG-GATGC-----AAAAAT---AGA-AACGAACCGAAAAACC----GAAGGCA--T-TTT--T-C-T-G-TG-AC--TCA---TGG-AATGTCCTA--T-GT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATATGACACG--TTATCTTG-CTTTT-----AAGCA-GTCCGTTAA--TG--AG-TG-A-TTGGGAGCTC-TTGTTTCTC--CCGAAT-T-CA-GA-ACTGTATAACGTTAAATGCACTACAACTGATTC-TA-TA-TCGAATT-AG-GGTCA---C-AGCGCCA-ATCTTTT--ATGTCTG-A-GGCTAGC--AA-TCCG-TGT---------------GTATTAT-T--TTGTCAATTTTCGT-GAACCGAGTGA--G-GTGTGAACG------AAAACTCATTT-T-TGAGC-AT--CATA--A-TTATATG-CCCATC-GT-AG-T-AC--A--CC--ACTCAGCA--A-AT-AAGGATAC-GAAATGGTGATTAGAAATAAAA---AG-AT--G-ACTTTTGAAAT-AC-ATA--ATTG-TATGCAAA-TG-A-G-ATTTA---ATGAAATT-TG-AT-GG--TTGT--G---AATAAT-TAACTTT-G-ATTTTTTTATA--ACGAAA-ACGTAGAAA--G-TAGCGACTCA-T-TC-A-T-GAAT-GATGA-A-ACTCAATATTATGGTTTT-TGCAC--TA-----CATTTA-T-TG-TTGCGCAAAAAT--AAGA-CGT-GAAAAATAAATTGA-TCAATAAA-T-T-AC-ATCAG--C-TTAATGAATT-A-AAT---GGGTTG-TTTTCGATTA---AGGCCG--A-------------ACAA-TTTC--AA--CAGAC-ATCTTGAA--TCT-TAGAAAGAGAcacgt
gi|21 : gtctatcaatgcaaaaattctttattgtgactgcaaaggatTAGAAA---AA---TT-AT--G-ACTTT--AAAATAC-ATAT-ATTG-T-TGCAAA-Ta
gi|3 : ATTTACTTCAC-G--AG-TTA-A-A--CGTC-AAA-AA--A--CCTGC-AT--AAAA-TCCG--T--GTCGCCAG-ATTATCAGACAGAGTTA----------TTGATCC--G-T-AA-TGCTGAGCTAAT-TTTACCACTGTTTCTTC----AA-AAAATCC-AAT-TCAAGA-GCTTTCCAAAAAT---AGA-AACGA-C-GAAAA--C----GA-GGCAATT-TTTA-TTC-T-G-TG-ACGCTCA---TGG-AATCT--TA--T-GT-A-A---GCG--AC-TAC-TATGAGA-T-C-ATA---CA-T--TT-TCT-G-CTTTT--TA-AAACA-GTC-GTTAA--T---AG-TG-ATT-GGAAGC-C-TTGTTTCTT--CCGA-T-T-CA-AA-A--GTATA--------CTGACTA-------TTCTTAATA-C--AATT-AG-G-TCAA--C--ACCGCA-ATC--TT-TATGTCGA-A-GGCTAGCT-AA-TCCG-TGG---------------GTAT-AT-CTATTGTAAA-TT-CGT-GAA-CGAGCAA--GCGTG-GAA--------GAAAC-TCTTT-G-GAAGC-TTTATATA--A-T-----G-CCTG-C-GT--G-T-ACATA--CC--A----GCAT-GAAT-AA-----CGGAAATGGT--ATAGAAA---AA---TT-A--TG-AC-TTTGAAAT--C-AT-T-ATT--T-TGCAAATTG-A-G-ATT-A---AT-AAATTAT--AT-GGGTT-GTG-T---GATAAA-TAT--TT-G-A-TTTTTT-TA-TACGAAA-G-GAAGAAA--G-TAGCGGATAA-TATA-C-TTGAAT-GATGA-AGATT--ATATTA-TGGTTT-TGCACG-TA-----CATTAT-T-TG-TTGCG---AAATTAAAGA-CGT-G--AAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATGAATG-ATAA----AGGGTG-TTTT-GATTA---GG------A-------------ACAA-TTTC--AA--CAGACAA--TTGAAT-T-T-TAGAAAGAGA
gi|4 : gcggtctatggcaatgcacaaaaatattctatttgcgcaaaggaTTTACTTCACTG--AGGTTA-A-A--CGTA-AAA-AA--A--CC-GC-AT-CAAAAATCGG--C--G----CAGGAA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TT-AC---TGTTT--TC----AA-AA--TCC-AATTC---GA-GC-----AAAAAT---AGA-AACGA-CCGAAAA--C----GA-GGCAAAT-TTT--TTC-TTG-T--ACG-TCA---TGG-AATGTC-TA--TCGT-AGAA--GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-GTTTTTT--T--AAACA-GTC-GTT-A--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CC-AA-A--GTATA--------T-GACTA-------TTC-T-ATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTTATTTGTCTGCG-GGCTAGCT-AACTCCG-TGT---------------GTAT-AT-C--TTGTCAA-TT-CGT-GAA-CGAGCAA--G-GTGTGAA--------GAA----CTCTGT-GAAGC-TT--TATAC-A-T-----G--CCG-CGGT-AG-T-AC--A--CC-------GCAT-G-AT-AA-----C-GGAATGGTGATTAGAAA---AAATTTT-AT-TGTACTTTTGAAATACC-ATAT-ATTG-T-TGCAAA-TG-A-GCATT-A---AT-AAATTATG-AT-GGGTT-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TAC-GAA-A-G-AGAAA--GTTAG-GACT-A-T-TC----TGAAT-GATGA-A-ACT--ATATTA-TGGTTT-TGCAC--TA-----CATTTATT-TG-TTGCG---AAAT--AAGA-CGTGGAAAAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATGATTT-ATAATAAAAGGTTG--TTT-GATTT---AG---G--A-------------ACA---TTC--AA--CAGAC----TTGAATTT-T-TAGAAAGAGA
gi|5 : ctctatgcaatggaaaaaatttttatttgactgcaaaggatATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AA------C-GC-AT-CAAAA-TCGG--C--G----CA--AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTA-T-TTTACC--TG-TT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAATAAGAAA-AACGA-CC-AAAA--C----GA-GGCA--T-TTT--TTC-T-G-TGAACG-TCA---T-G-AATGTC-TA---TGT-AGA---GCG--GCTTAC-TATGGGA-GAC-ATA-GACA-G--TT-T-T-G-C-TTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T--GAAGC-CTTTGTTTCAT--CCGA-T-T-CAGAA-A--GTATA--------T-GACAA--------TC-TAATA-TCGAATT-AG-G--CAA--CAAACCGCA-ATC-TTT-TATGTCTG-A-GGCTAGCT-AA-TCCGTTGT---------------GTAT-AT-C--TTGTCAATTT--GT-TAA-CGAGCGAGCG-GTGTGAA--------G-AACTCTTTT-TAAAAGCTTT--TATAAGA-C-----GTACCG-C-GT-AGTT-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGT-AATAGAAA---AA---TT-TTATG-ACTTT--AAATACC-ATAT-ATTGTT-TGCAAA-TGCA-G-A-T-A---AT-AAA-TATGAAT-GG----GTTGT---GATAAATTAA--TT-G-ATTTTTTT-TATTACGG-A-A-G-A-AAA--G-TAGCGGAC-A-T-TCTT-TTGAATGGATGA-A-ACT--ATATTATTTGTTT-TGCAC--TA-----CATCTA-T-TGCTTG-G---AAAT--AAGACCGT-G-AAAAATAA-TGA-C--AT-AA-T-TAAC-ATCAGGCT-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TGTCCAAA--CAGAC-A--TTGAA--T-T-TAGGAAGAGAa
gi|6 : cggtctatgccaatgcaaaaatatttatttgtgactgaaaggATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GCAAT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAG-GTTA----------CTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGACCCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AT-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT----TTTT--T--AAACA-GTC-GTTAA--TG-GAT-TG-A-T-GGAAGC-C-TTGTTTCGT--CCGA-T-T-CA-AA-A--GTATA--------TGGACTA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTAAATTT-CGTGGAACCGAGCAA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--ATT-----G-CCCG-C-GT-A--T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTAC-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-AT-GG--T-GT--T---TATAAA-TAA--TT-G-A-TTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCGACT-ATT-TC-T-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATTGATAAT---A-GTTGTTTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-AT-TTGAA--T-T-TAGAAAGAGA
gi|7 : ATTTTCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA-----CC-GC-AT-CCAAA-TCGG--C--G----CAG-AA-AT--AACAG--TTA----------TTGTTCC-CG-T-AA-TG-TG-GCAATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GT-----AAAAAT---AGA-AATGA-CCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TAG-AATGTC-TA---TGT-AGA---GCG--GC-TTC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-A-CTTTT--C--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GAAAGC-C-TTGTTTCAT--CCGA-T-T-CA-GA-A--GTATA--------T-GACAA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AAATGCA-ATCTTTT-TATGTCTG-G-GGCTAGCT-AA-TCTG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGT-GTCTCGAGCGA--G-GTGTGAA--------GAAACTT-TTT-T-GATGC-TT--TATA--A-T-------ACCG-C-GT-AG-T-AC--A--CC--A----GCAT-T-AT-AA-----C-GAAATGGT-AATAGAAA---AA---TT-A--TG-AC-TTTGAAA-TAC-ATCT-ATTG-T-TGC-AA-T----A-ATT-G---AT-AAATTATG-ATAGG--T-TG--T---GATAAA-TAAT-TT-GCATTTTTTT-TA-TAC-GAA-A-G-AGAAA--G-TAGCGACT-A-T-T--C-TTGAAT-G-TGA-A-ACT--ATATTA-TGGTTT-TGCAC--TA-----CATTTA-T-TG-TT--A---AAAT---AGA-TAT-AAAAA
gi|8 : aaagggtctatgcaatgcaaaaatattttattgtgactgcaaaggGAATTTAGCG-TCAA--C-AACCGCA--TCTTTT-TATGTCGG-AAGGCTAGCT-AA-TCCG-TGTCGTATATCCAGAGACATAT-AT-C--TTGTCAATTT-CGT-GTCTCGAGCGA--G-GTGTGAACATGGTGAAAAACTT-TTT-T-GATTC-TT--TATA--A-T-----A-TC-G-C-GTCAG-T-AC--A--CC--A----GCATTG-AT-AA-----C-GAAATGGT-AATAGAAA---AA---TT-----G-ACTTT-GAA--TAC-A-AT-ATTG-T--GCAAA-TG-A-G-ATT-G----T-AAGTTATG-AT-GG----GT--TCGTGATAAA-TA---TT-G-ATTTTTTT-T--TACG-AA-A-G-AGAAA--G-TAG-GACTGA-T-TC-AGTTGAAT-GATGA-A-ACT--AGATTTATGGTTT-TGCAC--TA-----TATTTA-T-TG-TTGCG---AAA---AAGA-CGT-G-AAAAATGATTGACC--AT-AA-T-T-ACAACCAG----TT-ATGAATT-ATAA----AGGTTG-CTGT-GATTA---GG---A--ATAAAGTACGACAGATAA-TTTC--AA--CAGAC-A--TCGAA----T-TAG-AAGAGA
gi|9 : ATTTTCGTTACTG--AG-TTA-A-A--CGTATAAACAA--A--CC-GC-AT-CAAAA-TCGGATC--G----CAGGAA-AT--AACAGAGT-A----------TTGATCC-CG-T--A-TG-TG-GCTATTCTTTACC--TGTTT--TC----AAGAA--TCC--AT-C----A-GC-----AAAAAT---AGAGAACGA-CCG-AAA--C----AACGGCA--TATTTA-TTC-T-GCTG-ACG-TCA---TGG-AATGT--TA--CTGTCAGACGGGCT--AC-TCC-T-CGCGACGCC-ATA-GAC--GCTTT-TCT-T-CTTTC--TTAAAACA-GTC-ATC-A--TG-GAGCTG-ACT-GGAAGC-C-TTGTTTCAT--CCGA-T-CACG-AA-C--GTATA--------TGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAAAGGGTCTATGGAATGAAATTATATTTTATTGTGATAGCAAAGGATTTTCTTCACTGAGTT
Unaligned ( gi|20 ): GGATTTCGATGCCAAATGGAATATCGTTTAATTGTGATTGCAAAGGTTTTCTCACTGA
Alignments
lowQualScore : 22222 1 1111111111 111 11111 1111111 1111 11 11 1111 111 11111 22222222222 1111111 333333333333333 1 22222222 11 11 22222222 1111111 11111 1 22222 11 222222222222 11 1111111111 11 11111 1111 44444444444444444444 1111 1111
lowQualScore : 1 44 3 3 3 44 3 3 00000 3 3 3 6 44 44 7777 0 3 55 4 4444444444 3 3 3 3 3 3 3 55 55 8888 4 66 8 4 333 4 11111 777 4 8 1111111 8 3333 55 4 4 4 4 4 777 4 0 22 5555 4 222 66 4 4 4 4 4 4 66 4 999 77777 4 4 4 66 55 4 4 8 4 4 4 66 4 4 4 4 6666 22222222222 1 6666666 5 5 4 4 4 66 4 5 3 4 4 4 4 4 4 222222222222222 4 4 66 3 4 4 2 66 4 22222222 22 4 4 4 66 00 4 88888888 4 4 4 4 4 66 66 2222222 555 5 22222 5 5 0 777 777 00000 4 1 8 44 4 4 4 4 4 4 4 4 4 777 4 4 4 555555555555 4 55 4 4 1 4 4 77 4 4 8 55 44 9999999999 4 4 4 55 33 4 99 00000 8 4 3 666 55 4 4 5 1 4 66 4 8 4 4 4 2222 8 8 9999 1 4 4 777 00000000000000000000 4 66 66 1111 1111 4
lowQualScore : . .. . . . .. . . ..... . . . . .. .. .... . . .. . .......... . . . . . . . .. .. .... . .. . . ... . ..... ... . . ....... . .... .. . . . . . ... . . .. .... . ... .. . . . . . . .. . ... ..... . . . .. .. . . . . . . .. . . . . .... ........... . ....... . . . . . .. . . . . . . . . . ............... . . .. . . . . .. . ........ .. . . . .. .. . ........ . . . . . .. .. ....... ... . ..... . . . ... ... ..... . . . .. . . . . . . . . . ... . . . ............ . .. . . . . . .. . . . .. .. .......... . . . .. .. . .. ..... . . . ... .. . . . . . .. . . . . . .... . . .... . . . ... .................... . .. .. .... .... .
lowQualScore : 0 66 3 3 3 66 3 3 66666 3 3 3 7 66 66 1111 9 6 00 4 6666666666 3 3 3 3 3 3 6 00 00 5555 4 11 9 4 999 4 11111 888 4 9 1111111 9 0000 00 4 4 4 4 4 888 4 1 88 9999 4 222 11 4 4 4 4 4 4 11 4 000 77777 4 4 8 11 66 4 4 9 4 4 4 11 4 4 4 4 9999 44444444444 0 2222222 0 0 4 4 4 11 4 0 2 4 4 4 4 4 4 222222222222222 4 4 11 6 4 4 0 11 4 22222222 77 4 4 4 11 66 4 11111111 4 4 4 4 4 11 11 0000000 111 0 55555 0 0 5 888 888 00000 4 9 1 44 0 0 0 0 0 4 4 4 4 888 4 4 4 111111111111 4 00 4 4 9 4 4 66 4 4 9 55 88 0000000000 0 0 0 55 99 0 55 00000 0 0 6 444 00 0 0 7 9 4 11 4 9 4 4 4 3333 9 9 7777 1 4 4 888 00000000000000000000 4 11 11 4444 4444 4
consensus : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GC-AT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGA-CCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-A--GTATA--------TGGACNA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGT-GAACCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--A-T-----G-NCCG-C-GT-AG-T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTAC-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-AT-GG--T-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCGACT-A-T-TC-C-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
Reference ( family-1858 ) : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GC-AT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGA-CCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-A--GTATA--------TGGACNA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGT-GAACCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--A-T-----G-NCCG-C-GT-AG-T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTAC-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-AT-GG--T-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCGACT-A-T-TC-C-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
gi|1 : TTACGTCACTGCAGG-TTA-A-AGGCGTA-CAA-AACGA--GC-G--AT-CAAAA-TCGG--CCGG----AAG-AA-AT--AACAGAGTTATTATTTTTTTTTGATCCGCGTT-AA-TG-T---CTTTT-TTTATT--TTTTT--T
gi|1 : gcgtctatgcaatcgcagaaatgaatcactctttgtgactgcaaaggagaT-TTTACC--T--TT--TC----AA-AA--TCCCAAT-C---GA-GC-----AAAAAT---AGA-AACGA-CCGGAAA--CAGATGG-GTCA--G-TGTCATTCGT-G-TG-A----------GA-AAT-TCATAAGTTG--AGA---GCGGGAC-TACATATGGGA-GACTATA-TACA-G--TT-TCT-G-CTTTTCAT--AAACAAGTC-GTTAAACTGAGAG-TGTG-T-GGAAGC-C-TTGTTTCATGTCCGA-TGT-CA-GACA--TTATA--------TG-ACAA-------TTC-TAATA--CGAATT-A----TCAAACT-AACCGCACATCTTTT-TATGT-TG-A-G-CTAGCTTAA-TCCG-TGTT--------------GTGT-ATTC--TTGTCAATTT-CTC-GAACCGAGCGA--G-GTGTGAA---------AAACT--CTT-T-GAAGC-TT--TATA--A-T-----G--CCG-C-GT-AG-TAAC--AGGCCCGA----GCAT-G-ATAAA-----C-GAAATGGTGACTAACAA---AA---TTGAG-TG-ACTTTGAGAAATACAATATAATTG-T-TGCAAA-TG-A-G-ATT-AATTAT-AAATTAGG-AT-G-----GT--T---GATAAA-TAAT-TT-G-ATTTTTTT-TA-TACGAAAGA-G-AGAAAGGG-TAGC-ACT-A-T-T--C-TTAATT-GATGAGA-ACT--ATATTAT--GTTTATGCGC--CACATAGCATTTACT-TG-TTGTG---AAAT--AAGA-CGT-TAGAAAATAATTGA-C--AA-AA-TAT-AC-ATCAG--C-TTAATGAATTAATAAT---A-GTTG-TTTT--ATTGGATGG---ACTA-------------CCAATTTTC--AAGTCAGA--A--TTGAA--T-TATAGAAAGAGAattttttgtttacgcattttaccttttcaaaatcccaatcgagcaaaaatagaaacgaccggaaacagatgggtcagtgtcattcgtgtgagaaattcataagttgagagcgggactacatatgggagactatatacagtttctgcttttcataaacaagtcgttaaactgagagtgtgtggaagccttgtttcatgtccgatgtcagacattatatgacaattctaatacgaattatcaaactaaccgcacatctttttatgttgagctagcttaatccgtgttgtgtattcttgtcaatttctcgaaccgagcgaggtgtgaaaaactctttgaagctttataatgccgcgtagtaacaggcccgagcatgataaacgaaatggtgactaacaaaattgagtgactttgagaaatacaatataattgttgcaaatgagattaattataaattaggatggttgataaataatttgattttttttatacgaaagagagaaagggtagcactattcttaattgatgagaactatattatgtttatgcgccacatagcatttacttgttgtgaaataagacgttagaaaataattgacaaaatatacatcagcttaatgaattaataatagttgttttattggatggactaccaattttcaagtcagaattgaattatagaaagaga
gi|10 : gcgtctatgcaatcgcagaaatgaatcactctttgtgactgcaaaggagattacgtcactgcaggttaaaggcgtacaaaacgagcgatcaaaatcggccggaagaaataacagagttattatttttttttgatccgcgttaatgtctttttttattttttttattttttgtttacgcaTA----------TCGATCC-CG-T-AA-TA-TG-GCTATT-TTTACC--TGCTT--TC----AA-AA--TCC-AAT-C---AA-GC-----AAAAAT---AGA-AACGA-CCGAAAA--------A---------------TC-T-C-TG-ACG-TCACATCGGCAACAAA-TA--TGGT---------G--GC-TAG-TATAGAA-TAC-ATA-GGCA-G--TT-ACA-G-CCTTT--A--ACACA-GTA-GTTTA--TG-CGT-TG-A-T-GCAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-C--GTAT---------TTAACAA-------TTC-TAATATTCGAATT-AG-G-CCTA--C-GAC
gi|11 : TGAAAT-AC-ATAC-ATTG-T-TGCAA--TG-AAG-ATT-A---AT-AAATTATG-AG-GT--T-GT------GATAAA-TAA--TTTG-ATTTTTTT--A-TACG-AA-A-G-AGAAA--G----CGACT-A-T-TC---TTGAAT-GATGA-A-ACT--ATATTAT-GGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAA-ATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTGT-GATTA---GG------A-------------ATAA-TTCC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGAaaagttatctaagtatcagtgtctagtctgtgt
gi|12 : ttagATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AA--A--CC-GC-ATCCAAAATTCGG--C--G----CAGAAA-AT--TACAG-GTTA----------TTGAT-C-CG-T-AA-TG-TG-Ga
gi|13 : aagggactatgcaatgaagaattaaatttattgtgattgccaaaggATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AA-----CC-GC-AT-CAAAA-TCGG--C--G----CAG-AA-AT--TACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-Gaaattacattatttaatattatttctagtcacttcataaaaattatccaa
gi|14 : aagggactatgcaatggaagaataatttattgtgattgcaaaggATTTTCTTCATTG--AA-TTA-A-A--CGTA-TAA-AA-----TC-GC-AT-CAAAA-TCGT--C--A----CAG-AA-AT--AACAAAGTTA----------TCGATAC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----Aaaattacattatttaatatattctagtcactcataaaatatccaa
gi|15 : aaagggtctatgcaatgatatggcattttattgtgattgcaaagg-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------ATAT-AT-C--TTGTCAACCT-CGT-GTCTCGAGCAA--G-GTGTGAA--------GAAACTTTTTT-C-GATGC-TT--TATA--A-T-------ACCG-T-GT-AG-T-AC--A--CC--A----
gi|16 : ctttttacatg-TTTCG---AAAT--AAGA-CGT-GAAAA-ATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTGT-GATTA---GG------A-------------ACAA-TTTC--AA--CAGAC-A---TGAA--T-T-TAGAAAGAGA
gi|17 : ATGTTCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--AACCC-GC-AT-CAAAA-TCGG--C--G----Ca
gi|18 : agcatctatgcaatgcaaaaatattttattgtgactgcaaaggGAAA--A--AGCGACT-A----C-C-TTAAAA-GA-GA-A-TC---ATAT-ATGAATTT-TAC-CGGTA-----CATTTA-TGTG-CTGCG---AAAT--A
gi|2 : tacaaatTCTACTTC-CTG--AG-TTACACA--CGTA-AAA-AA-----CC-GC-AT-CAAA--TCG---C--G----CAG-AA-A---AACAGAGTTA----------T-GATTC-CG-TTAACTG-TG--CT-TT-TTAACC--TGTTT--TTTTCAAA-AA--TCCTAAT-CCG-GATGC-----AAAAAT---AGA-AACGAACCGAAAAACC----GAAGGCA--T-TTT--T-C-T-G-TG-AC--TCA---TGG-AATGTCCTA--T-GT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATATGACACG--TTATCTTG-CTTTT-----AAGCA-GTCCGTTAA--TG--AG-TG-A-TTGGGAGCTC-TTGTTTCTC--CCGAAT-T-CA-GA-ACTGTATAACGTTAAATGCACTACAACTGATTC-TA-TA-TCGAATT-AG-GGTCA---C-AGCGCCA-ATCTTTT--ATGTCTG-A-GGCTAGC--AA-TCCG-TGT---------------GTATTAT-T--TTGTCAATTTTCGT-GAACCGAGTGA--G-GTGTGAACG------AAAACTCATTT-T-TGAGC-AT--CATA--A-TTATATG-CCCATC-GT-AG-T-AC--A--CC--ACTCAGCA--A-AT-AAGGATAC-GAAATGGTGATTAGAAATAAAA---AG-AT--G-ACTTTTGAAAT-AC-ATA--ATTG-TATGCAAA-TG-A-G-ATTTA---ATGAAATT-TG-AT-GG--TTGT--G---AATAAT-TAACTTT-G-ATTTTTTTATA--ACGAAA-ACGTAGAAA--G-TAGCGACTCA-T-TC-A-T-GAAT-GATGA-A-ACTCAATATTATGGTTTT-TGCAC--TA-----CATTTA-T-TG-TTGCGCAAAAAT--AAGA-CGT-GAAAAATAAATTGA-TCAATAAA-T-T-AC-ATCAG--C-TTAATGAATT-A-AAT---GGGTTG-TTTTCGATTA---AGGCCG--A-------------ACAA-TTTC--AA--CAGAC-ATCTTGAA--TCT-TAGAAAGAGAcacgt
gi|21 : gtctatcaatgcaaaaattctttattgtgactgcaaaggatTAGAAA---AA---TT-AT--G-ACTTT--AAAATAC-ATAT-ATTG-T-TGCAAA-Ta
gi|3 : ATTTACTTCAC-G--AG-TTA-A-A--CGTC-AAA-AA--A--CCTGC-AT--AAAA-TCCG--T--GTCGCCAG-ATTATCAGACAGAGTTA----------TTGATCC--G-T-AA-TGCTGAGCTAAT-TTTACCACTGTTTCTTC----AA-AAAATCC-AAT-TCAAGA-GCTTTCCAAAAAT---AGA-AACGA-C-GAAAA--C----GA-GGCAATT-TTTA-TTC-T-G-TG-ACGCTCA---TGG-AATCT--TA--T-GT-A-A---GCG--AC-TAC-TATGAGA-T-C-ATA---CA-T--TT-TCT-G-CTTTT--TA-AAACA-GTC-GTTAA--T---AG-TG-ATT-GGAAGC-C-TTGTTTCTT--CCGA-T-T-CA-AA-A--GTATA--------CTGACTA-------TTCTTAATA-C--AATT-AG-G-TCAA--C--ACCGCA-ATC--TT-TATGTCGA-A-GGCTAGCT-AA-TCCG-TGG---------------GTAT-AT-CTATTGTAAA-TT-CGT-GAA-CGAGCAA--GCGTG-GAA--------GAAAC-TCTTT-G-GAAGC-TTTATATA--A-T-----G-CCTG-C-GT--G-T-ACATA--CC--A----GCAT-GAAT-AA-----CGGAAATGGT--ATAGAAA---AA---TT-A--TG-AC-TTTGAAAT--C-AT-T-ATT--T-TGCAAATTG-A-G-ATT-A---AT-AAATTAT--AT-GGGTT-GTG-T---GATAAA-TAT--TT-G-A-TTTTTT-TA-TACGAAA-G-GAAGAAA--G-TAGCGGATAA-TATA-C-TTGAAT-GATGA-AGATT--ATATTA-TGGTTT-TGCACG-TA-----CATTAT-T-TG-TTGCG---AAATTAAAGA-CGT-G--AAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATGAATG-ATAA----AGGGTG-TTTT-GATTA---GG------A-------------ACAA-TTTC--AA--CAGACAA--TTGAAT-T-T-TAGAAAGAGA
gi|4 : gcggtctatggcaatgcacaaaaatattctatttgcgcaaaggaTTTACTTCACTG--AGGTTA-A-A--CGTA-AAA-AA--A--CC-GC-AT-CAAAAATCGG--C--G----CAGGAA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TT-AC---TGTTT--TC----AA-AA--TCC-AATTC---GA-GC-----AAAAAT---AGA-AACGA-CCGAAAA--C----GA-GGCAAAT-TTT--TTC-TTG-T--ACG-TCA---TGG-AATGTC-TA--TCGT-AGAA--GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-GTTTTTT--T--AAACA-GTC-GTT-A--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CC-AA-A--GTATA--------T-GACTA-------TTC-T-ATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTTATTTGTCTGCG-GGCTAGCT-AACTCCG-TGT---------------GTAT-AT-C--TTGTCAA-TT-CGT-GAA-CGAGCAA--G-GTGTGAA--------GAA----CTCTGT-GAAGC-TT--TATAC-A-T-----G--CCG-CGGT-AG-T-AC--A--CC-------GCAT-G-AT-AA-----C-GGAATGGTGATTAGAAA---AAATTTT-AT-TGTACTTTTGAAATACC-ATAT-ATTG-T-TGCAAA-TG-A-GCATT-A---AT-AAATTATG-AT-GGGTT-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TAC-GAA-A-G-AGAAA--GTTAG-GACT-A-T-TC----TGAAT-GATGA-A-ACT--ATATTA-TGGTTT-TGCAC--TA-----CATTTATT-TG-TTGCG---AAAT--AAGA-CGTGGAAAAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATGATTT-ATAATAAAAGGTTG--TTT-GATTT---AG---G--A-------------ACA---TTC--AA--CAGAC----TTGAATTT-T-TAGAAAGAGA
gi|5 : ctctatgcaatggaaaaaatttttatttgactgcaaaggatATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AA------C-GC-AT-CAAAA-TCGG--C--G----CA--AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTA-T-TTTACC--TG-TT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAATAAGAAA-AACGA-CC-AAAA--C----GA-GGCA--T-TTT--TTC-T-G-TGAACG-TCA---T-G-AATGTC-TA---TGT-AGA---GCG--GCTTAC-TATGGGA-GAC-ATA-GACA-G--TT-T-T-G-C-TTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T--GAAGC-CTTTGTTTCAT--CCGA-T-T-CAGAA-A--GTATA--------T-GACAA--------TC-TAATA-TCGAATT-AG-G--CAA--CAAACCGCA-ATC-TTT-TATGTCTG-A-GGCTAGCT-AA-TCCGTTGT---------------GTAT-AT-C--TTGTCAATTT--GT-TAA-CGAGCGAGCG-GTGTGAA--------G-AACTCTTTT-TAAAAGCTTT--TATAAGA-C-----GTACCG-C-GT-AGTT-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGT-AATAGAAA---AA---TT-TTATG-ACTTT--AAATACC-ATAT-ATTGTT-TGCAAA-TGCA-G-A-T-A---AT-AAA-TATGAAT-GG----GTTGT---GATAAATTAA--TT-G-ATTTTTTT-TATTACGG-A-A-G-A-AAA--G-TAGCGGAC-A-T-TCTT-TTGAATGGATGA-A-ACT--ATATTATTTGTTT-TGCAC--TA-----CATCTA-T-TGCTTG-G---AAAT--AAGACCGT-G-AAAAATAA-TGA-C--AT-AA-T-TAAC-ATCAGGCT-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TGTCCAAA--CAGAC-A--TTGAA--T-T-TAGGAAGAGAa
gi|6 : cggtctatgccaatgcaaaaatatttatttgtgactgaaaggATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GCAAT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAG-GTTA----------CTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGACCCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AT-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT----TTTT--T--AAACA-GTC-GTTAA--TG-GAT-TG-A-T-GGAAGC-C-TTGTTTCGT--CCGA-T-T-CA-AA-A--GTATA--------TGGACTA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTAAATTT-CGTGGAACCGAGCAA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--ATT-----G-CCCG-C-GT-A--T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTAC-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-AT-GG--T-GT--T---TATAAA-TAA--TT-G-A-TTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCGACT-ATT-TC-T-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATTGATAAT---A-GTTGTTTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-AT-TTGAA--T-T-TAGAAAGAGA
gi|7 : ATTTTCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA-----CC-GC-AT-CCAAA-TCGG--C--G----CAG-AA-AT--AACAG--TTA----------TTGTTCC-CG-T-AA-TG-TG-GCAATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GT-----AAAAAT---AGA-AATGA-CCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TAG-AATGTC-TA---TGT-AGA---GCG--GC-TTC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-A-CTTTT--C--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GAAAGC-C-TTGTTTCAT--CCGA-T-T-CA-GA-A--GTATA--------T-GACAA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AAATGCA-ATCTTTT-TATGTCTG-G-GGCTAGCT-AA-TCTG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGT-GTCTCGAGCGA--G-GTGTGAA--------GAAACTT-TTT-T-GATGC-TT--TATA--A-T-------ACCG-C-GT-AG-T-AC--A--CC--A----GCAT-T-AT-AA-----C-GAAATGGT-AATAGAAA---AA---TT-A--TG-AC-TTTGAAA-TAC-ATCT-ATTG-T-TGC-AA-T----A-ATT-G---AT-AAATTATG-ATAGG--T-TG--T---GATAAA-TAAT-TT-GCATTTTTTT-TA-TAC-GAA-A-G-AGAAA--G-TAGCGACT-A-T-T--C-TTGAAT-G-TGA-A-ACT--ATATTA-TGGTTT-TGCAC--TA-----CATTTA-T-TG-TT--A---AAAT---AGA-TAT-AAAAA
gi|8 : aaagggtctatgcaatgcaaaaatattttattgtgactgcaaaggGAATTTAGCG-TCAA--C-AACCGCA--TCTTTT-TATGTCGG-AAGGCTAGCT-AA-TCCG-TGTCGTATATCCAGAGACATAT-AT-C--TTGTCAATTT-CGT-GTCTCGAGCGA--G-GTGTGAACATGGTGAAAAACTT-TTT-T-GATTC-TT--TATA--A-T-----A-TC-G-C-GTCAG-T-AC--A--CC--A----GCATTG-AT-AA-----C-GAAATGGT-AATAGAAA---AA---TT-----G-ACTTT-GAA--TAC-A-AT-ATTG-T--GCAAA-TG-A-G-ATT-G----T-AAGTTATG-AT-GG----GT--TCGTGATAAA-TA---TT-G-ATTTTTTT-T--TACG-AA-A-G-AGAAA--G-TAG-GACTGA-T-TC-AGTTGAAT-GATGA-A-ACT--AGATTTATGGTTT-TGCAC--TA-----TATTTA-T-TG-TTGCG---AAA---AAGA-CGT-G-AAAAATGATTGACC--AT-AA-T-T-ACAACCAG----TT-ATGAATT-ATAA----AGGTTG-CTGT-GATTA---GG---A--ATAAAGTACGACAGATAA-TTTC--AA--CAGAC-A--TCGAA----T-TAG-AAGAGA
gi|9 : ATTTTCGTTACTG--AG-TTA-A-A--CGTATAAACAA--A--CC-GC-AT-CAAAA-TCGGATC--G----CAGGAA-AT--AACAGAGT-A----------TTGATCC-CG-T--A-TG-TG-GCTATTCTTTACC--TGTTT--TC----AAGAA--TCC--AT-C----A-GC-----AAAAAT---AGAGAACGA-CCG-AAA--C----AACGGCA--TATTTA-TTC-T-GCTG-ACG-TCA---TGG-AATGT--TA--CTGTCAGACGGGCT--AC-TCC-T-CGCGACGCC-ATA-GAC--GCTTT-TCT-T-CTTTC--TTAAAACA-GTC-ATC-A--TG-GAGCTG-ACT-GGAAGC-C-TTGTTTCAT--CCGA-T-CACG-AA-C--GTATA--------TGa
blockSeqs : T . G C C . T C AAC T A C T AT . TCGC A T CA A . . . T C C A C AC CT TTCA G AA T T CAA T TTTCC AAG G A ACC A ATT A . T C A C CAT C CC TG C CGG . T . C . T C CT A TG TTA . C T . C C . T T T T . A . A G ACT ACGTTAAATGC A CAACTGA T T T C G . A . T A C A . C T CGTATATCCAGAGAC T . TA C T G T GC C CATGGTGA TT G A T TA AG T TATATGC T G C T . AT . ACTCA GA . GGATA G G TAA ATT TTAT T T T AT . . T A T C A C T . G A A GTTGTGT T CT T C T A T GA . C T . TT AATATAC G . G CA TG . GG . T G C CAA TA C G A A C CA A T . A A GCT A G TAAA G T C . AATAAAGTACGACAG . CA . ATC TTT .
blockSeqs : T . . . . . . . A . . . A . . . G . . A . . . . . . . . . . . . . . . CG . . . . C C C AAT A . . . . . . . A TC . A . . . . . . . . . GT TA . . A . G . . C . . . . . . . . C TTA T . . . . . . . . . T . . . . . . . . . . T . . C . . CG CA . . . . C . GTA . . . . . . . A TG . . . G . . ATT . T T TA . . . . . . . . . . . . . GTTGTT . T . . T . . GA . . A . T GATTCAG . . . . TG . G . . . . . . . . A A . . . T . . . CT . . T G . . . GCCGA . . . AA TC .
blockSeqs : T . . . . . . . A . . . . . . . G . . A . . . . . . . . . . . . . . . . . . . . . C . TA . . . . . . . . C TT . . . . . . . . . . . G A . . A . G . . . . . . . . . . . A CTG T . . . . . . . . . T . . . . . . . . . . T . . C . . . TC . . . . . . GC . . . . . . . A A . . . G . . ATT . T T TA . . . . . . . . . . . . . GTTCGT . . . . T . . GG . . . . T CATTCA . . . . TT . . . . . . . . . . A A . . . . . . . CT . . T G . . . GA . . . AT TT .
blockSeqs : T . . . . . . . A . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . C . T . . . . . . . . C CT . . . . . . . . . . . G T . . A . G . . . . . . . . . . . A TGG T . . . . . . . . . T . . . . . . . . . . T . . T . . . CT . . . . . . GC . . . . . . . A G . . . . . . AT . T T TT . . . . . . . . . . . . . TTGTG . . . . T . . GG . . . . T ATTCTT . . . . TT . . . . . . . . . . A A . . . . . . . C . . T G . . . AA . . . A T .
blockSeqs : A . . . . . . . A . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . C . T . . . . . . . . C T . . . . . . . . . . . G T . . A . G . . . . . . . . . . . A TG A . . . . . . . . . T . . . . . . . . . . T . . T . . . TC . . . . . . AT . . . . . . . A G . . . . . . AT . T T T . . . . . . . . . . . . . GTTGT . . . . T . . G . . . . T ATTTCT . . . . AT . . . . . . . . . . A A . . . . . . . C . . T G . . . AA . . . A T .
blockSeqs : A . . . . . . . A . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . C . T . . . . . . . . C T . . . . . . . . . . . A T . . A . G . . . . . . . . . . . A TG T . . . . . . . . . . . . . . . . . . . . T . . . . . . C . . . . . . A . . . . . . . A G . . . . . . AT . T T T . . . . . . . . . . . . . TGTT . . . . T . . G . . . . T ATTC . . . . T . . . . . . . . . . A A . . . . . . . C . . T G . . . A . . . A T .
blockSeqs : A . . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . C . T . . . . . . . . . T . . . . . . . . . . . T C . . . . . . . . . . . . . . . . A TG A . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . G . . . . . . . A T . . . . . . AT . . . T . . . . . . . . . . . . . TTGT . . . . . . . G . . . . T ATTC . . . . T . . . . . . . . . . . . . . . . . . . C . . . G . . . A . . . A T .
blockSeqs : A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . T . . . . . . A . . . . . . . . . . . . . . T . . . . . . . . . . . . . TGT . . . . . . . G . . . . . ATTC . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . A . . . . . .
blockSeqs : A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . ACC . . . . T . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : ** ** A**** ** ********** C****** ** C* T*** ** T**** ** G* ** A*** TG********* ** *************** TC ** A****** AT*** T* *** GTTGTT****** ** ** ATTC****** TT ***** *** GA****************** **
originalCons : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GC-AT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGA-CCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TA--TTGT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTT--T--AAACA-GTC-GTTAA--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AA-A--GTATA--------TGGACNA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGT-GAACCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--A-T-----G-NCCG-C-GT-AG-T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT-AT-TG-ACTTTTGAAATTAC-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-AT-GG--T-GT--T---GATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCGACT-A-T-TC-C-TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GG---A--A-------------ACAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
finalCons : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AAA----CC-GC-AT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAAT---AGA-AACGA-CCGAAAAC------GA-GGCA--T-TTT--TTC-T-G-TG-ACG-TCA---TGG-AATGTC-TAT---GT-AGA---GCG--AC-TAC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTTT----AAACA-GTC-GTTAA--TGG-AG-TG-A-T-GGAAGC-C-TTGTTTCAT--CCGA-T-T-CA-AAA---GTATATG---------ACNA-------TTC-TAATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGCT-AA-TCCG-TGT---------------GTAT-AT-C--TTGTCAATTT-CGT-GAACCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--A-T-----G-NCCG-C-GT-AG-T-AC--A--CCA------GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TTAT---G-ACTTTTGAAAT-AC-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-AT-GGGTTGTT------GATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCGACTATTC------TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTA---GGGA------------------ACAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAAAGGGTCTATGGAATGAAATTATATTTTATTGTGATAGCAAAGGATTTTCTTCACTGAGTT
Unaligned ( gi|20 ): GGATTTCGATGCCAAATGGAATATCGTTTAATTGTGATTGCAAAGGTTTTCTCACTGA
Alignments
lowQualScore : 22222 1 1111111111 111 11111 1111111 1111 11 11 11 111 11111 3333333333333333333 222222222222222 1111 22222222 11 11 33333333 1111111 11111 1 111 11 11 11 11 11111 1111 3333333333333333333333 1111 1111
lowQualScore : 1 44 3 3 3 44 3 3 00000 3 3 3 6 44 44 7777 0 3 55 4 4444444444 3 3 3 3 3 3 3 2 55 55 8888 4 66 8 4 333 4 11111 777 4 4 4 1111111 8 3333 55 4 4 4 4 4 777 4 0 22 4 8 00 222 66 4 4 4 4 4 4 66 4 999 88888 4 4 4 4 66 55 4 4 4 8 4 4 66 4 4 4 4 4 4 4 7777777777777777777 5 5 4 4 4 66 4 5 4 4 4 4 4 4 4 777777777777777 4 4 66 3 4 5555 66 4 22222222 22 4 4 4 66 00 22222222 4 4 4 4 4 66 66 2222222 555 5 22222 5 5 0 777 333 8888 4 4 1 22 4 8 4 4 4 4 4 4 4 4 4 777 4 4 3 99 4 55 4 4 7777 77 4 4 8 55 44 777 8 66 4 4 4 55 33 4 99 00000 8 4 3 666 55 4 4 5 1 4 66 4 8 4 4 4 2222 8 8 9999 1 4 4 1111111111111111111111 4 4 66 66 1111 1111 4
lowQualScore : . .. . . . .. . . ..... . . . . .. .. .... . . .. . .......... . . . . . . . . .. .. .... . .. . . ... . ..... ... . . . ....... . .... .. . . . . . ... . . .. . . .. ... .. . . . . . . .. . ... ..... . . . . .. .. . . . . . . .. . . . . . . . ................... . . . . . .. . . . . . . . . . ............... . . .. . . .... .. . ........ .. . . . .. .. ........ . . . . . .. .. ....... ... . ..... . . . ... ... .... . . . .. . . . . . . . . . . . ... . . . .. . .. . . .... .. . . . .. .. ... . .. . . . .. .. . .. ..... . . . ... .. . . . . . .. . . . . . .... . . .... . . . ...................... . . .. .. .... .... .
lowQualScore : 0 66 3 3 3 66 3 3 66666 3 3 3 7 66 66 1111 9 6 00 4 6666666666 3 3 3 3 3 3 6 3 00 00 5555 4 11 9 4 999 4 11111 888 4 4 4 1111111 9 0000 00 4 4 4 4 4 888 4 1 88 4 9 66 222 11 4 4 4 4 4 4 11 4 000 77777 4 4 4 8 11 66 4 4 4 9 4 4 11 4 4 4 4 4 4 4 9999999999999999999 0 0 4 4 4 11 4 0 4 4 4 4 4 4 4 888888888888888 4 4 11 6 4 1111 11 4 22222222 77 4 4 4 11 66 66666666 4 4 4 4 4 11 11 0000000 111 0 55555 0 0 5 888 999 7777 4 4 9 11 0 0 0 0 0 0 0 4 4 4 4 888 4 4 9 00 4 00 4 4 2222 66 4 4 9 55 88 000 0 55 0 0 0 55 99 0 55 00000 0 0 6 444 00 0 0 7 9 4 11 4 9 4 4 4 3333 9 9 7777 1 4 4 0000000000000000000000 4 4 11 11 4444 4444 4
consensus : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GCA-T-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAATAG---A-AACGA-CC-GAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TGA-CG-TCA---TGG-AATGTC-TA-T-GT--AGA---GC--GACT-AC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTT--T--AAA-C-AGTC-GTTAA--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCA--TCCGA-T-T-CA-AA-AGTATA-TG-ACN------------------ATTCT-AATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGC-TAA-TCCG-TG-T---------------GTAT-A-TC--TTGTCAATTT-CGTG-AACCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--AT-----G-NCCG-C-GT-AG-T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT--A-T-G-ACTTTT-GAAAT-A-C-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-ATGGGTTGT-TGATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCG---ACT-ATTC--TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTAG--G---GA-------------A-CAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
Reference ( family-1858 ) : ATTTNCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GCA-T-CAAAA-TCGG--C--G----CAG-AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAATAG---A-AACGA-CC-GAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TGA-CG-TCA---TGG-AATGTC-TA-T-GT--AGA---GC--GACT-AC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-G-CTTTT--T--AAA-C-AGTC-GTTAA--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCA--TCCGA-T-T-CA-AA-AGTATA-TG-ACN------------------ATTCT-AATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGC-TAA-TCCG-TG-T---------------GTAT-A-TC--TTGTCAATTT-CGTG-AACCGAGCGA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--AT-----G-NCCG-C-GT-AG-T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT--A-T-G-ACTTTT-GAAAT-A-C-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-ATGGGTTGT-TGATAAA-TAA--TT-G-ATTTTTTT-TA-TACGGAA-A-G-AGAAA--G-TAGCG---ACT-ATTC--TTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTAG--G---GA-------------A-CAA-TTTC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGA
gi|1 : TTACGTCACTGCAGG-TTA-A-AGGCGTA-CAA-AACGA--GC-G-A-T-CAAAA-TCGG--CCGG----AAG-AA-AT--AACAGAGTTATTATTTTTTTTTGATCCGCGTT-AA-TG-T---CTTTT-TTTATT--TTTTT--T
gi|1 : gcgtctatgcaatcgcagaaatgaatcactctttgtgactgcaaaggagaT-TTTACC--T--TT--TC----AA-AA--TCCCAAT-C---GA-GC-----AAAAATAG---A-AACGA-CC-GGAAA--CAGATGG-GTCA--G-TGTCATTCGT-G-TGA-----------GA-AAT-TCATA-A-GTTGAGA---GCGGGACT-ACATATGGGA-GACTATA-TACA-G--TT-TCT-G-CTTTTCAT--AAA-CAAGTC-GTTAAACTGAGAG-TGTG-T-GGAAGC-C-TTGTTTCATGTCCGA-TGT-CA-GACATTATA-TG-ACA------------------ATTCT-AATA--CGAATT-A----TCAAACT-AACCGCACATCTTTT-TATGT-TG-A--GCTAGCTTAA-TCCG-TGTT---------------GTGT-ATTC--TTGTCAATTT-CTCG-AACCGAGCGA--G-GTGTGAA---------AAACT--CTT-T-GAAGC-TT--TATA--AT-----G--CCG-C-GT-AG-TAAC--AGGCCCGA----GCAT-G-ATAAA-----C-GAAATGGTGACTAACAA---AA---TTGAG-T-G-ACTTTGAGAAAT-A-CAATATAATTG-T-TGCAAA-TG-A-G-ATT-AATTAT-AAATTAGG-ATG----GT-TGATAAA-TAAT-TT-G-ATTTTTTT-TA-TACGAAAGA-G-AGAAAGGG-TAGC----ACT-ATTC--TTAATT-GATGAGA-ACT--ATATTAT--GTTTATGCGC--CACATAGCATTTACT-TG-TTGTG---AAAT--AAGA-CGT-TAGAAAATAATTGA-C--AA-AA-TAT-AC-ATCAG--C-TTAATGAATTAATAAT---A-GTTG-TTTT--ATTGGATG---GACT-----------ACCAATTTTC--AAGTCAGA--A--TTGAA--T-TATAGAAAGAGAattttttgtttacgcattttaccttttcaaaatcccaatcgagcaaaaatagaaacgaccggaaacagatgggtcagtgtcattcgtgtgagaaattcataagttgagagcgggactacatatgggagactatatacagtttctgcttttcataaacaagtcgttaaactgagagtgtgtggaagccttgtttcatgtccgatgtcagacattatatgacaattctaatacgaattatcaaactaaccgcacatctttttatgttgagctagcttaatccgtgttgtgtattcttgtcaatttctcgaaccgagcgaggtgtgaaaaactctttgaagctttataatgccgcgtagtaacaggcccgagcatgataaacgaaatggtgactaacaaaattgagtgactttgagaaatacaatataattgttgcaaatgagattaattataaattaggatggttgataaataatttgattttttttatacgaaagagagaaagggtagcactattcttaattgatgagaactatattatgtttatgcgccacatagcatttacttgttgtgaaataagacgttagaaaataattgacaaaatatacatcagcttaatgaattaataatagttgttttattggatggactaccaattttcaagtcagaattgaattatagaaagaga
gi|10 : gcgtctatgcaatcgcagaaatgaatcactctttgtgactgcaaaggagattacgtcactgcaggttaaaggcgtacaaaacgagcgatcaaaatcggccggaagaaataacagagttattatttttttttgatccgcgttaatgtctttttttattttttttattttttgtttacgcaTA----------TCGATCC-CG-T-AA-TA-TG-GCTATT-TTTACC--TGCTT--TC----AA-AA--TCC-AAT-C---AA-GC-----AAAAATAG---A-AACGA-CC-GAAAA--------A---------------TC-T-C-TGA-CG-TCACATCGGCAACAAA-TA-T-G---------GT--GGCT-AG-TATAGAA-TAC-ATA-GGCA-G--TT-ACA-G-CCTTT--A--ACA-C-AGTA-GTTTA--TG-CGT-TG-A-T-GCAAGC-C-TTGTTTCA--TCCGA-T-T-CA-AA-CGTATT-TA-ACA------------------ATTCT-AATATTCGAATT-AG-G-CCTA--C-GAC
gi|11 : T-GAAAT-A-C-ATAC-ATTG-T-TGCAA--TG-AAG-ATT-A---AT-AAATTATG-A--GGTTGT--GATAAA-TAA--TTTG-ATTTTTTT--A-TACG-AA-A-G-AGAAA--G----CG---ACT-ATTC--TTGAAT-GATGA-A-ACT--ATATTAT-GGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAA-ATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTGT-GATTA---G---GA-------------A-TAA-TTCC--AA--CAGAC-A--TTGAA--T-T-TAGAAAGAGAaaagttatctaagtatcagtgtctagtctgtgt
gi|12 : ttagATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AA--A--CC-GCA-TCCAAAATTCGG--C--G----CAGAAA-AT--TACAG-GTTA----------TTGAT-C-CG-T-AA-TG-TG-Ga
gi|13 : aagggactatgcaatgaagaattaaatttattgtgattgccaaaggATTTTCTTCACTG--AG-TTA-A-A--CGTT-AAG-AA-----CC-GCA-T-CAAAA-TCGG--C--G----CAG-AA-AT--TACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-Gaaattacattatttaatattatttctagtcacttcataaaaattatccaa
gi|14 : aagggactatgcaatggaagaataatttattgtgattgcaaaggATTTTCTTCATTG--AA-TTA-A-A--CGTA-TAA-AA-----TC-GCA-T-CAAAA-TCGT--C--A----CAG-AA-AT--AACAAAGTTA----------TCGATAC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----Aaaattacattatttaatatattctagtcactcataaaatatccaa
gi|15 : aaagggtctatgcaatgatatggcattttattgtgattgcaaagg-TATGTCTG-A-GGCTAGC-TAA-TCCG-TG-T---------------ATAT-A-TC--TTGTCAACCT-CGTG-TCTCGAGCAA--G-GTGTGAA--------GAAACTTTTTT-C-GATGC-TT--TATA--AT-------ACCG-T-GT-AG-T-AC--A--CC--A----
gi|16 : ctttttacatg-TTTCG---AAAT--AAGA-CGT-GAAAA-ATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATT-ATAAT---AGGTTG-TTGT-GATTA---G---GA-------------A-CAA-TTTC--AA--CAGAC-A---TGAA--T-T-TAGAAAGAGA
gi|17 : ATGTTCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--AACCC-GCA-T-CAAAA-TCGG--C--G----Ca
gi|18 : agcatctatgcaatgcaaaaatattttattgtgactgcaaaggGAAA--A--AGCG---ACT-AC-C--TTAAAA-GA-GA-A-TC---ATAT-ATGAATTT-TAC-CGGTA-----CATTTA-TGTG-CTGCG---AAAT--A
gi|2 : tacaaatTCTACTTC-CTG--AG-TTACACA--CGTA-AAA-AA-----CC-GCA-T-CAAA--TCG---C--G----CAG-AA-A---AACAGAGTTA----------T-GATTC-CG-TTAACTG-TG--CT-TT-TTAACC--TGTTT--TTTTCAAA-AA--TCCTAAT-CCG-GATGC-----AAAAATAG---A-AACGAACC-GAAAAACC----GAAGGCA--T-TTT--T-C-T-G-TGA-C--TCA---TGG-AATGTCCTA-T-GT--AGA---GC--GACT-AC-TATGGGA-GAC-ATATGACACG--TTATCTTG-CTTTT-----AAG-C-AGTCCGTTAA--TG--AG-TG-A-TTGGGAGCTC-TTGTTTCT--CCCGAAT-T-CA-GA-ACTGTA-TA-ACGTTAAATGCACTACAACTGATTCT-A-TA-TCGAATT-AG-GGTCA---C-AGCGCCA-ATCTTTT--ATGTCTG-A-GGCTAGC--AA-TCCG-TG-T---------------GTATTA-TT--TTGTCAATTTTCGTG-AACCGAGTGA--G-GTGTGAACG------AAAACTCATTT-T-TGAGC-AT--CATA--ATTATATG-CCCATC-GT-AG-T-AC--A--CC--ACTCAGCA--A-AT-AAGGATAC-GAAATGGTGATTAGAAATAAAA---AG--A-T-G-ACTTTT-GAAAT-A-C-ATA--ATTG-TATGCAAA-TG-A-G-ATTTA---ATGAAATT-TG-ATGG-TTGT-GAATAAT-TAACTTT-G-ATTTTTTTATA--ACGAAA-ACGTAGAAA--G-TAGCG---ACTCATTC--ATGAAT-GATGA-A-ACTCAATATTATGGTTTT-TGCAC--TA-----CATTTA-T-TG-TTGCGCAAAAAT--AAGA-CGT-GAAAAATAAATTGA-TCAATAAA-T-T-AC-ATCAG--C-TTAATGAATT-A-AAT---GGGTTG-TTTTCGATTAA--GGCCGA-------------A-CAA-TTTC--AA--CAGAC-ATCTTGAA--TCT-TAGAAAGAGAcacgt
gi|21 : gtctatcaatgcaaaaattctttattgtgactgcaaaggatTAGAAA---AA---TT--A-T-G-ACTTT--AAAAT-A-C-ATAT-ATTG-T-TGCAAA-Ta
gi|3 : ATTTACTTCAC-G--AG-TTA-A-A--CGTC-AAA-AA--A--CCTGCA-T--AAAA-TCCG--T--GTCGCCAG-ATTATCAGACAGAGTTA----------TTGATCC--G-T-AA-TGCTGAGCTAAT-TTTACCACTGTTTCTTC----AA-AAAATCC-AAT-TCAAGA-GCTTTCCAAAAATAG---A-AACGA-C--GAAAA--C----GA-GGCAATT-TTTA-TTC-T-G-TGA-CGCTCA---TGG-AATCT--TA-T-GT--A-A---GC--GACT-AC-TATGAGA-T-C-ATA---CA-T--TT-TCT-G-CTTTT--T--AAAAC-AGTC-GTTAA--T---AG-TG-A-TTGGAAGC-C-TTGTTTCT--TCCGA-T-T-CA-AA-AGTATACTG-ACT------------------ATTCTTAATA-C--AATT-AG-G-TCAA--C-A-CCGCA-ATCTTT---ATGTCGA-A-GGCTAGC-TAA-TCCG-TG-G---------------GTAT-A-TCTATTGTAAA-TT-CGTG-AA-CGAGCAA--GCGTG-GAA--------GAAAC-TCTTT-G-GAAGC-TTTATATA--AT-----G-CCTG-C-GT--G-T-ACATA--CC--A----GCAT-GAAT-AA-----CGGAAATGGT--ATAGAAA---AA---TT--A-T-G-AC-TTT-GAAAT---C-AT-T-ATT--T-TGCAAATTG-A-G-ATT-A---AT-AAATTAT--ATGGGTTGTGTGATAAA-TAT--TT-G-A-TTTTTT-TA-TACGAAA-G-GAAGAAA--G-TAGCGGATAAT-ATAC--TTGAAT-GATGA-AGATT--ATATTA-TGGTTT-TGCACG-TA-----CATTAT-T-TG-TTGCG---AAATTAAAGA-CGT-G--AAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATGAATG-ATAA----AGGGTG-TTTT-GATTA---G---GA-------------A-CAA-TTTC--AA--CAGACAA--TTGAAT-T-T-TAGAAAGAGA
gi|4 : gcggtctatggcaatgcacaaaaatattctatttgcgcaaaggaTTTACTTCACTG--AGGTTA-A-A--CGTA-AAA-AA--A--CC-GCA-T-CAAAAATCGG--C--G----CAGGAA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TT-AC---TGTTT--TC----AA-AA--TCC-AATTC---GA-GC-----AAAAATAG---A-AACGA-CC-GAAAA--C----GA-GGCAAAT-TTT--TTC-TTG-T-A-CG-TCA---TGG-AATGTC-TA-TCGT--AGAA--GC--GACT-AC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-GTTTTTT--T--AAA-C-AGTC-GTT-A--TG-GAG-TG-A-T-GGAAGC-C-TTGTTTCA--TCCGA-T-T-CC-AA-AGTATA-TG-ACT------------------ATTCT--ATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTTATTTGTCTGCG-GGCTAGC-TAACTCCG-TG-T---------------GTAT-A-TC--TTGTCAA-TT-CGTG-AA-CGAGCAA--G-GTGTGAA--------GAA----CTCTGT-GAAGC-TT--TATAC-AT-----G--CCG-CGGT-AG-T-AC--A--CC-------GCAT-G-AT-AA-----C-GGAATGGTGATTAGAAA---AAATTTT--ATT-GTACTTTT-GAAAT-ACC-ATAT-ATTG-T-TGCAAA-TG-A-GCATT-A---AT-AAATTATG-ATGGGTTGT-TGATAAA-TAA--TT-G-ATTTTTTT-TA-TAC-GAA-A-G-AGAAA--GTTAG-G---ACT-ATTC---TGAAT-GATGA-A-ACT--ATATTA-TGGTTT-TGCAC--TA-----CATTTATT-TG-TTGCG---AAAT--AAGA-CGTGGAAAAAATAATTGA-C--AT-AATT-T-AC-ATCAG--CTTT-ATGATTT-ATAATAAAAGGTTG--TTT-GATTTA--G---GA-------------A-CA---TTC--AA--CAGAC----TTGAATTT-T-TAGAAAGAGA
gi|5 : ctctatgcaatggaaaaaatttttatttgactgcaaaggatATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AA------C-GCA-T-CAAAA-TCGG--C--G----CA--AA-AT--AACAGAGTTA----------TTGATCC-CG-T-AA-TG-TG-GCTATT-TT-ACC--TGTTT---C----AA-AA--TCC-AAT-C---GA-GC-----AAAAATAAGAAA-AACGA-CC--AAAA--C----GA-GGCA--T-TTT--TTC-T-G-TGAACG-TCA---TG--AATGTC-TA-T-GT--AGA---GC--GGCTTAC-TATGGGA-GAC-ATA-GACA-G--TT-T-T-G-CTTTT-----AAA-C-AGTC-GTTAA--TG-GAG-TG-A-T--GAAGC-CTTTGTTTCA--TCCGA-T-T-CAGAA-AGTATA-TG-ACA------------------A-TCT-AATA-TCGAATT-AG-G--CAA--CAAACCGCA-ATC-TTT-TATGTCTG-A-GGCTAGC-TAA-TCCGTTG-T---------------GTAT-A-TC--TTGTCAATTT--GTT-AA-CGAGCGAGCG-GTGTGAA--------G-AACTCTTTT-TAAAAGCTTT--TATAAGAC-----GTACCG-C-GT-AGTT-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGT-AATAGAAA---AATT-TT--A-T-G-ACTTT---AAAT-ACC-ATAT-ATTGTT-TGCAAA-TGCA-G-A-T-A---AT-AAA-TATGAATGGGTTG--TGATAAATTAA--TT-G-ATTTTTTT-TATTACGG-A-A-G-A-AAA--G-TAGCG---GAC-ATTCTTTTGAATGGATGA-A-ACT--ATATTATTTGTTT-TGCAC--TA-----CATCTA-T-TGCTTG-G---AAAT--AAGACCGT-G-AAAAATAA-TGA-C--AT-AA-T-TAAC-ATCAGGCT-TT-ATGAATT-ATAAT---AGGTTG-TTTT-GATTAG--G---AA-------------A-CAA-TGTCCAAA--CAGAC-A--TTGAA--T-T-TAGGAAGAGAa
gi|6 : cggtctatgccaatgcaaaaatatttatttgtgactgaaaggATTTACTTCACTG--AG-TTA-A-A--CGTA-AAA-AA--A--CC-GCAAT-CAAAA-TCGG--C--G----CAG-AA-AT--AACAG-GTTA----------CTGATCC-CG-T-AA-TG-TG-GCTATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GC-----AAAAATAG---A-AACGA-CCCGAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TGA-CG-TCA---TGG-AATGTC-TA-TTGT--AGA---GC--GATT-AC-TATGGGA-GAC-ATA-GACA-G--TT-TCT----TTTT--T--AAA-C-AGTC-GTTAA--TG-GAT-TG-A-T-GGAAGC-C-TTGTTTCG--TCCGA-T-T-CA-AA-AGTATA-TGGACT------------------ATTCT-AATA-TCGAATT-AG-G-TCAA--C-AACCGCA-ATCTTTT-TATGTCTG-A-GGCTAGC-TAA-TCCG-TG-T---------------GTAT-A-TC--TTGTAAATTT-CGTGGAACCGAGCAA--G-GTGTGAA--------GAAACTTCTTT-T-GAAGC-TT--TATA--ATT----G-CCCG-C-GT-A--T-AC--A--CC--A----GCAT-G-AT-AA-----C-GAAATGGTGAATAGAAA---AA---TT--A-TTG-ACTTTT-GAAATTA-C-ATAT-ATTG-T-TGCAAA-TG-A-G-ATT-A---AT-AAATTATG-ATGG--TGT-TTATAAA-TAA--TT-G-ATTTTTTT--A-TACGGAA-A-G-AGAAA--G-TAGCG---ACT-ATTTCTTTGAAT-GATGA-A-ACT--ATATTATTGGTTT-TGCAC--TA-----CATTTA-T-TG-TTGCG---AAAT--AAGA-CGT-GAAAAAATAATTGA-C--AT-AA-T-T-AC-ATCAG--C-TT-ATGAATTGATAAT---A-GTTGTTTTT-GATTAG--G---AA-------------A-CAA-TTTC--AA--CAGAC-AT-TTGAA--T-T-TAGAAAGAGA
gi|7 : ATTTTCTTCACTG--AG-TTA-A-A--CGTA-AAA-AA-----CC-GCA-T-CCAAA-TCGG--C--G----CAG-AA-AT--AACAG--TTA----------TTGTTCC-CG-T-AA-TG-TG-GCAATT-TTTACC--TGTTT--TC----AA-AA--TCC-AAT-C---GA-GT-----AAAAATAG---A-AATGA-CC-GAAAA--C----GA-GGCA--T-TTT--TTC-T-G-TGA-CG-TCA---TAG-AATGTC-TA-T-GT--AGA---GC--GGCT-TC-TATGGGA-GAC-ATA-GACA-G--TT-TCT-A-CTTTT--C--AAA-C-AGTC-GTTAA--TG-GAG-TG-A-T-GAAAGC-C-TTGTTTCA--TCCGA-T-T-CA-GA-AGTATA-TG-ACA------------------ATTCT-AATA-TCGAATT-AG-G-TCAA--C-AAATGCA-ATCTTTT-TATGTCTG-G-GGCTAGC-TAA-TCTG-TG-T---------------GTAT-A-TC--TTGTCAATTT-CGTG-TCTCGAGCGA--G-GTGTGAA--------GAAACTT-TTT-T-GATGC-TT--TATA--AT-------ACCG-C-GT-AG-T-AC--A--CC--A----GCAT-T-AT-AA-----C-GAAATGGT-AATAGAAA---AA---TT--A-T-G-AC-TTT-GAAAT-A-C-ATCT-ATTG-T-TGC-AA-T----A-ATT-G---AT-AAATTATG-ATAGGTTG--TGATAAA-TAAT-TT-GCATTTTTTT-TA-TAC-GAA-A-G-AGAAA--G-TAGCG---ACT-ATTC--TTGAAT-G-TGA-A-ACT--ATATTA-TGGTTT-TGCAC--TA-----CATTTA-T-TG-TT--A---AAAT---AGA-TAT-AAAAA
gi|8 : aaagggtctatgcaatgcaaaaatattttattgtgactgcaaaggGAATTTAGCG-TCAA--C-AACCGCA--TCTTTT-TATGTCGG-AAGGCTAGC-TAA-TCCG-TG-TCGTATATCCAGAGACATAT-A-TC--TTGTCAATTT-CGTG-TCTCGAGCGA--G-GTGTGAACATGGTGAAAAACTT-TTT-T-GATTC-TT--TATA--AT-----A-TC-G-C-GTCAG-T-AC--A--CC--A----GCATTG-AT-AA-----C-GAAATGGT-AATAGAAA---AA---TT------G-ACTTT---GAAT-A-C-A-AT-ATTG-T--GCAAA-TG-A-G-ATT-G----T-AAGTTATG-ATGGGTTCG-TGATAAA-TA---TT-G-ATTTTTTT-T--TAC-GAA-A-G-AGAAA--G-TAG-G---ACTGATTCAGTTGAAT-GATGA-A-ACT--AGATTTATGGTTT-TGCAC--TA-----TATTTA-T-TG-TTGCG---AAA---AAGA-CGT-G-AAAAATGATTGACC--AT-AA-T-T-ACAACCAG----TT-ATGAATT-ATAA----AGGTTG-CTGT-GATTAG--G---AATAAAGTACGACAGA-TAA-TTTC--AA--CAGAC-A--TCGAA----T-TAG-AAGAGA
gi|9 : ATTTTCGTTACTG--AG-TTA-A-A--CGTATAAACAA--A--CC-GCA-T-CAAAA-TCGGATC--G----CAGGAA-AT--AACAGAGT-A----------TTGATCC-CG-T--A-TG-TG-GCTATTCTTTACC--TGTTT--TC----AAGAA--TCC--AT-C----A-GC-----AAAAATAG---AGAACGA-CC-G-AAA--C----AACGGCA--TATTTA-TTC-T-GCTGA-CG-TCA---TGG-AATGT--TACT-GTC-AGACGGGC--TACT-CC-T-CGCGACGCC-ATA-GAC--GCTTT-TCT-T-CTTTC--TTAAAA-C-AGTC-ATC-A--TG-GAGCTG-ACT-GGAAGC-C-TTGTTTCA--TCCGA-T-CACG-AA-CGTATA-TG-a
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TAAAGGGTCTATGGAATGAAATTATATTTTATTGTGATAGCAAAGGATTTTCTTCACTGAGTT
Unaligned ( gi|20 ): GGATTTCGATGCCAAATGGAATATCGTTTAATTGTGATTGCAAAGGTTTTCTCACTGA