lowQualScore : 77777777777777 1111 4 3 444444444444444444444 1 999999 111 1111 111 111111 1111111111 111 1 8888888 111 4444444444444444444444444 111 11 3333333333333333333333 4444 1 1 11111 1111 11111 22222222222 111111 111111 222222222222222222 1 888888 9999999999999999999999999999999 1
lowQualScore : 66666666666666 88 2222 0 8 0 8 888888888888888888888 1 555555 111 4444 111 999999 4444444444 111 2 99 6 7 3333333 44 000 5 9999999999999999999999999 222 5 6 77 6 6666666666666666666666 9999 6 6 5 1 6 9 5 6 77 4 4 66 4 66 11111 4 77 4 4 777 3333 11111 4 11111111111 5 1 66 4 1 333333 222222 111111111111111111 4 2 666 66 0 5 6 5 5 5 4 0 666666 5 5 5 2222222222222222222222222222222 0 3 0 5
lowQualScore : .............. .. .... . . . . ..................... . ...... ... .... ... ...... .......... ... . .. . . ....... .. ... . ......................... ... . . .. . ...................... .... . . . . . . . . .. . . .. . .. ..... . .. . . ... .... ..... . ........... . . .. . . ...... ...... .................. . . ... .. . . . . . . . . ...... . . . ............................... . . . .
lowQualScore : 00000000000000 88 6666 0 0 0 0 666666666666666666666 7 888888 777 2222 777 222222 5555555555 000 3 22 7 3 3333333 22 000 7 9999999999999999999999999 666 7 7 22 7 2222222222222222222222 2222 7 7 0 0 7 0 0 7 99 4 4 11 4 11 11111 1 00 0 0 888 8888 11111 4 11111111111 2 1 11 4 9 000000 888888 444444444444444444 4 5 222 99 0 0 0 0 0 0 4 1 444444 0 0 0 0000000000000000000000000000000 5 2 8 0
consensus : TACGTAAT--AA-GCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT-G-TATAA-AAGGTGATT-NAAGA--T--CTATTGATATTAA------TTGTTTAGTGG---CCAAATC----AA---TGATACATG------TAGTCCGATTA--GTCTG-GTGCCACAAACACTA--GTA-GTCCGGTGCCACTAAC-AC---TGATAGTCCGG---TGC-CACCAA-----AT-------------TC--CCCCAAAAAACATAATTATGTCGCAAAA-CAGCATGAA-TAACATCATTT-NAAT-GTGATAGAACGTTTCTTTGTTTTT-A-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAAT-TTCTTGTATTAGCTGGAATTGTATTTAAAA-GCAAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANATC-AAG-C-AACTGCA---TGTAG---AAAT-----GT-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TT----TTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TAC-CA-CGAAAAGTCCGTTG-CTGAGCACG-TT-----AGAAAAGC-G---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
Reference ( gi|3 ) : TACGTAAT-TAAGGCCTACTTTAATAT-TGTTTT-A-AAGACAGGCTTAGAAAAAATTGCT-TAAATCG-TATAA-CAGCTGATT-TAAA---T--CTATTGATACTAAATTGTTTTGTTTAGTGG---CCAAATC----AA---TGATACATG------TAGCCCGATTA--GTCTG-GCGCCTCAAACACTA--GTA-GTCCGGTGCCACTAATTACATATAATAGTCCGG---TGC-CACCAG-----AT-------------TT--CCCTAGAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTT-GAAT-GTGATAGAACGTTTCTTTGATTTT-A-CAT-----T-TATCTATAATTAAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAAGATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGATT-AAG-C-AACTGCA---TGTAA---AAAT-----AT-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TT----TTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAACT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATATACCGCTAC-CA-CGAAAAGTCCGTTG-CTGAGCA----------AAAAAAAA-A---------AAAAAAAACACGGATAGTCCGTCCCCATTGCACACCGTGT
gi|2 : TACGTAAT-AAA--CCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGTT-TAAAT-G-TATAA-AAG-TGATT-AAAAAG-T--CTATTGATATTAA------TTGTTTAGTGG---CCAAATC----AA---TGACGCATG------TAGTCCGATTA--GTCTG-GTGCCACAAACACTA--GTA-GTCCGGTGCCACTAAC-AC---TGATAGTCCGG---TGC-CACCAA-----AT-------------TC--CCCCCAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACACCATTT-CAAT-GTGATAGA--------------------AT-----T-TATCTATA---AAGATATG-CTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATCGTATTTAAAA-GCAAATATG-G--TCCGTG-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTTAAAAGATC-AAG-C-AACTGCA---AGTAG---AAAT-----GT-TAAT-----------GTAAAAACATCTTTAAAATTCCGTAAC--G-TAAAGTCATATTTT------TT----TTT---------A-----------------ATA--ACGCC-A-AAGAAGAACAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TAC-CA-CGAAAAGTCTGTTG-CTGAGCA----------AAAAAAAACAAAACAAAACAAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|4 : agagtggggactgcccccggctcctgtacgcccgtttacgttatattaaatctaatagtacgTACGTAAT---AGGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT-G-TATAA-AAG-TGATT-AAAAAG-T--ATATTGATATTAA------TTGTTTAGTGG---CCAAATC----AA---TGATACATG------TAGTCCAATTA--GTCTG-GTGCCACAAACATTA--GTA-GTCCGGTGCCACTAAC-AC---TGATAGTCCGG---TGC-CACCAA-----AT-------------GT--CCCCAAAAAACATAATTATGTCGGAAAA-CAGCACGAG-TACCATCATTT-AAAT-GTGATAGAACGTATATTTGTTTTT-A-CAT-----T-TATCTATAA---AGATATG-TTATTTAT-TTGAAATATTCTTGTATTAGCTG-----------AAAA----AATATG-G--TCCGTA-TTTTG-A--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAATATC-GAG-C-AACTGCA---TGTAG---AAAT-----AT-TAAT-----------GCAAAAGCATCTTTAAAATTCCGTAAC--G-TAGAG-----CTTT------TTAAAA------------A-AAAAT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-AACATATA-CCTTATCGA-TTTGCTAATA-AT-----C-CA-CAAAAAGTCCGTTG-CTGAGC-----------------GA-G---------AAAAAAAACAAGGATAGT-----CCCATTCCACACCGTG
gi|5 : cacgcccatgtttacgttatattatatctaatagtatgTACGTAAT---------ACTC-AATATATGTTT----AAGACAGGCTTAGAAAAA-TTGCT-TAAAT-G-TATAAACGGGTC-TT-TAAGATGT--CTGTTGATA---AGT------GTTTAGTGG---CCACGTC----AA---CGATACATG------TAGTCTCATTATAGTCTG-GTGTCACAAACACTT--GTA-GTCCGATGCCACTAAC-GC---TAATAGTCCGG---TGC-CACCAA-----AG-------------TC--CTC-AAAAAACATAATTTTATCGCAAAA-CAGCATGAA-TAACGTAATTT-CAAT-GTGATAAAACGTTTCTTTATTTTT-A-CATATACATGTATCTATAA---AGATATG-TTATTTAC-TTGAAATGTTCTTGTATTAGCTGAAATTGCATTTAAA--GCAAATATG-G--TCCGTA-TTTTG-G--TCCGACT-TGGTAGTTTTGTG--TT-----GGTGATTTTGAAGATAATTGAAAATATC-AAG-C-AACTGCA---TATTG---AGAT-----GT-TGAT-----------GCAAAAATATC-TTGAAATT---TAA------AAAG-----GTTT------TT----TCC---------ACAAAGT-AT
gi|1 : ttcgaatgaccttttatgtcacttaaaatttagaagcttgcagccccctttcaaaatcagtcctacgctactttaatattcaataatatgtacgttaattatattatacgttttattatatctaataggaTACGTAAGATA--GCCTACTT--ATAT-TGTTTTTACAAGACAG-CTTAGAAAAA-TTGCTCTAAATCGCTATAA---GGT-ATA-CAAG---T--CTAT-GA-ATTAA--TGTCCT---TGATGGGCCTCAAATCTCGTAGCTCTTATACATGAATTTATAGTATG--TA--GTCTATGTGTCTCGCACTCTACGATACGTCTGGTGCCACTAAGCACTCGCC-TAGTCCGGAATTGCGCACTAGCCTGGATGTCGGTGCAACAATTAGCTCCAAAAAACGTATATATGTCGCAAAAACAGCATGAAATAACATCATTTTAAAT-GTGATAGAACCTTTC----------------------TATCTAT--TAAAGATATGTTTATTTAT-TTGAAAT-TTC-TGTA-TAGCTGGAATTGTATTTAAAAGGCCAATTTG-GGTCCCGTACTTTTG-GTATTCGATTGTGGT-GCTTTCTGCTTGTCAGTGGTGATTTAACAGATAATTGAACAAATTCAAG-C-AACTGCATCGTGTAGCACAAGT-----ATCTAATACTCCGCTGTCACAAAAACATCTTC--AATTCCGTAACCTGTTAAAG-----CTTT------TT----TTTTTTTTTTAAA-AAAGT-TTGGAATG-TATATTACGCC-ACAGGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTACTAAT-------TAC-CATCGAAAAGTCCGTTGCCTGAGC---------------AAAA-A---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTgc
gi|8 : gagagggggactgcctctccccggctcctatagccaatgtttttacgcttatattatatagatctaatcaagtatTACGTAAT---------ACTT-AATAT--ATTTT-A-ATGACAGGCTTAGAAAAA-TTGCT-TGAAT-G-TATAA-AAG-TGATT-AACA---TGTCTATTGATATTAA------TTGTTTAGTGG---CCAAATC----AA---TGATACA------------------A--GTCTG-ATGCCACAAACACTA--GTA-GTCCGG----AC----------TGATAGTCCGA---TGC-CACCAA-----AG-------------T----CCTCAAAAATATAATTATATCGTAAAA-CAGCATGA
gi|6 : aatgaccttttatgtcacttaatttagacccccccaactttcaaatctgttatgttcaatagtatatatacgttaatcatattatacgaaatattatatttaatagggGATTATAAG---T--CTATTGATATTAA------TTGTTTAGTGG---CCAAATC----AA---TGATACATG------TAGTTCGATT----------------------------A-GTCTGGTGCCAC-AA--ACAT-TAGTAGTCCGG---TGC-CACCAA-----AT-------------TT--CCCCAAAAAACATGATTATGTCGCAAAA-CAGCATGAA-TAACATCATTT-AAAT-GTGATAGAACGTTTCTTTGTTTTTTA-CAT-----T-TATCTATAA---AGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCAAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGATC-AAG-CAAACTGCA---TGTAG---AAAT-----GT-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TT----TTT---------T-AAAGT-ATTGAA-G-TATA--ACGCCAA-AAGAAG-AAAATT-GTGA-GACATATA-CCTTATCGA--TTGCTAATA------TAC-CA-CGAAAAGTCCGTTG-CTGAGCA----------AAAAAAAC-A---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCAT
gi|7 : GG---TGC-TACCAG-----AA-------------GC--CCTCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTT-CAATGGTG-TAGAACGTTTCTTTGTTTTT-ATTAT-----T-TATCTATAA--AGAATATG-TTATTTATATTGAAAT-TTCTTGTATTAGCT-GAATTGTATTT--AA-GCAAATAAGTG--TCCGTA-TTTTG-G--T-CGATT-TGGTAGTTTTGTG--TG-----GGTGA-TTTGAAGATAA-TGAAAAG--T-AAGAC-AACTGCT---TGTAG---AAAT-----AT-TATG-----------GCAAAAACATCTTTAAAATT-CGTAAC--G-TAAAG-----CTTTTTTTTATT----TTT---------A-AAAGTGATTGAA-G-TATA--ACGCCAA-AAGAAGAAAAATTGGTGACGACATATATCCTTATCGATTTTGCTAA-ATACCAC
gi|15 : --TCCGTA-TTTTTTG--TCTGCTT-TGGTACCTTTGTG--AG-----GACGATTGTACAAATAATTGACAATATC-AAG-C-g
gi|9 : taaaatgaatgaaaGTA-TTTTG-G--TCCGATT-TGGTACTTTTGTG--TG-----GGTGATTTTGAAGTTAATTGAAAACATC-AAG-C-AACTGCA---TATAG---AAATGTTAAAT-TAAT-----------GCAAAAACATC-TTAAAAGTCCGTAAC--G-TAAAG-----TTTT------GT----TAA---------A-AAAAT-ATTCAA-GTTATA--ACGCC-A-AGAAAGAAAATTT-GTGA-GACACTTA-TCTTATCAA-TTCCCTACTA------TAC-CA-CGAAAAGTCTGTTG-CTGAGCACGCTTAGTCTGGAAACGC-G---------TAAAATAACACGGGAAATCCGTCCCCATTCCACACCGTG
gi|16 : TA-TTTTG-G--TCCGATT-TGGTAGTTTAGTG--TG-----GTTGATTTTAAAGATTATTGAAAAGATC-AAG-C-A
gi|10 : TAATTGAAAACATC-AAG-C-AATTGCA---TATAG---AAAT-----GT-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAT--G-TAAAG-----CTTT------TT----TTA---------A-AAAGT-ATT-------------C------AAGAAGAAAATTT-GTGA-GACGCTTA-TCTTTTCAA-TTCTCTACTA------TAC-CA-CGAAAAGTCCGTTG-TTGAGCACGCTTAGTCTGGAAACGC-G---------TAAAATAACACGGAAAGTCCGTCCCCATTCCACACCGTG
gi|11 : ttTGCA---TGTAG---AAAT-----GT-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TT----TTT---------T-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGGAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TAC-CA-CGAAAAGTCCGTTG-CTGAGCA----------AAAAAAAC-A---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCAT
gi|14 : CGA-TTTCCTAGTACA--ACTACACA-C--AAAGTCCGTTG-CTGAGCACGTTT-----AGTCTGGA-----------------AACGCAGAAAATCCGTCCCCATTCGGCACCG
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TGCTCGAGATGTCATTGTATAGGCCACTTATTAACAGTCTCCGCGCGCACTTTAGAAAATCAGTCCGACGCCTCCTGTAATTTCCATAGTTATATAGATTTATTATTAATTATACGTTATTTTTATTCTAATAGGATACGTTAATACTTAATTATAT
Unaligned ( gi|13 ): TGCTCGAGATGTCATTACTATGCCCTTATTTAAAGTCCCGCCGACTTTTGGAAAATCAGTCGACGCCTGCTGTAATGTTCCATAGTTATATATGATTTATTATAATTATACGTATTATTTATATCTAATAGGGATACGTTAATACTTAATTATAT
Unaligned ( gi|17 ): CTTATTTTTTTTTATATAACTTTTGCCGCTTATCAAGTACGTTCCATACCAGGTGATTTTAGA
Unaligned ( gi|18 ): ATAAAATCACGGATGGGAGGCATGGGTCCCACTCCAAGGCGCTTGTTT
Alignments
lowQualScore : 222222 333333333 2222 222 11111 1111111 11111 444444444444444444 1111111 111111 1111111 1 2 11111 11111 11111111111 111111 111111 22222222222 111111 9999999999999999999999999999
lowQualScore : 000000 6 6 888 6 6 333333333 6666 1 5 000 77 0 22222 7777777 44444 5 5 222222222222222222 77 5 77 1111111 222222 5 1 0 0 5 4 5 5 5 1 5 1 77 5 4444444 5 77 0 5 5 8 8 5 5 66 4 4 55 4 55 00000 1 3 3 3 777 777 00000 4 99999999999 3 55 4 0 000000 111111 44444444444 4 1 4 4 66 8 4 4 4 4 4 111111 4 55 4 4 3333333333333333333333333333 1
lowQualScore : ...... . . ... . . ......... .... . . ... .. . ..... ....... ..... . . .................. .. . .. ....... ...... . . . . . . . . . . . . .. . ....... . .. . . . . . . . .. . . .. . .. ..... . . . . ... ... ..... . ........... . .. . . ...... ...... ........... . . . . .. . . . . . . ...... . .. . . ............................ .
lowQualScore : 222222 7 7 333 7 7 333333333 7777 0 7 000 99 1 33333 9999999 33333 7 7 111111111111111111 99 7 99 6666666 999999 7 4 7 2 0 5 0 0 7 0 7 4 33 7 4444444 7 99 1 7 7 6 4 0 0 99 0 0 55 0 55 00000 0 6 6 6 000 000 00000 0 00000000000 8 55 0 8 777777 555555 77777777777 0 1 4 4 11 9 4 4 4 4 0 555555 0 55 0 4 0000000000000000000000000000 9
consensus : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAAAG---GTGATTNA-ANG-T--CTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGC-AAAACAGCATG-AATAACATCA-TTTNAAT-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGCA-----A-----GAAAAGCG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
Reference ( family-1856 ) : TACGTAAT--A-AGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAAAG---GTGATTNA-AGA-T--CTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATGTCGC-AAAACAGCATG-AATAACATCA-TTTNAAT-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAAT-TTCTTGTATTAGCTGGAATTGTATTTAAAA-GCAAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGCACG-TTA-----GAAAAGCG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|1 : TACGTAAG--ATAGCCTACTT-A-TAT-TGTTTTTACAAGACAG-CTTAGAAAAA-TTGCTCTAAATCGCTATAAGGTATACAAGTCTATGAATTA-ATG-T--CC-TTGATGGGCCTCAA--------ATCTCGTAGCTCTTATACATGAATTTATAGTATGTAGTCTATGTGTCTCGCACTCTACGATAC--GTCTGGTGCCACTAAGCACTCGCCTAGTCCGGAATTGCGCACTAGC--C---TGGAT-GTC-GGTGCAAC--AATTAGCTCCAAAAAACGTATATATGTCGCAAAAACAGCATGAAATAACATCATTTTAAAT-GTGATAGAACCTTTC----------------------TATCTATTA--AAGATATGTTTATTTAT-TTGAAAT-TTC-TGTA-TAGCTGGAATTGTATTTAAAAGGCCAATTTG-GGTCCCGTACTTTTG-GTATTCGATTGTGGT-GCTTTCTGCTTGTCAGTGGTGATTTAACAGATAATTGAACAAATTCAAG-C-AACTGCATCGTGTAGCACAAGTA-----TCTAATACTCCGCTGTCACAAAAACATCTTC--AATTCCGTAACCTGTTAAAG-----CTTT------TTTTTTTTTTTTAAA-AAAGT-TTGGAATG-TATATTACGCC-ACAGGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTACTAAT-------TA-C--CATCGAAAAGTCCGTTGCCTGAGCA------------AAAA------------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGT
gi|10 : gagagggggactgcctctccccggctcctatagccaatgtttttacgcttatattatatagatctaatcaagtatTAATTGAAAACA-TCAAG-C-AATTGCA---TATAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAT--G-TAAAG-----CTTT------TTTTA---------A-AAAGT-ATT-------------C------AAGAAGAAAATTT-GTGA-GACGCTTA-TCTTTTCAA-TTCTCTACTA------TA-C--CA-CGAAAAGTCCGTTG-TTGAGCACGCTTAGTCTGGAAACGCG---------TAAAATAACACGGAAAGTCCGTCCCCATTCCACACCGTG
gi|11 : ttTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGGAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGCA-----A-----AAAAAACA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCAT
gi|14 : CGA-TTTCCTAGTA------CAACTACA-CACAAAGTCCGTTG-CTGAGCACGTTTA-----GTCTGG----------------AAACGCAGAAAATCCGTCCCCATTCGGCACCG
gi|15 : AAA-ATGAATGAA-A--TCCGTA-TTTTTTG--TCTGCTT-TGGTACCTTTGTG--AG-----GACGATTGTACAAATAATTGACAATA-TCAAG-C-
gi|16 : tTA-TTTTG-G--TCCGATT-TGGTAGTTTAGTG--TG-----GTTGATTTTAAAGATTATTGAAAAGA-TCAAG-C-A
gi|2 : TACGTAAT--A-AACCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGTT-TAAAT---------GTATAAAA----GTGATTAA-AAAGT--CTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ACG-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCCAAAAACATAATTATATCGC-AAAACAGCATG-AATAACACCA-TTTCAAT-GTGATAGA--------------------AT-----T-TATCTAT-A--AAGATATG-CTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATCGTATTTAAAA-GCAAATATG-G--TCCGTG-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTTAAAAGA-TCAAG-C-AACTGCA---AGTAG---AAATG-----T-TAAT-----------GTAAAAACATCTTTAAAATTCCGTAAC--G-TAAAGTCATATTTT------TTTTT---------A-----------------ATA--ACGCC-A-AAGAAGAACAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGCAA----A-----AAAAAACAAAACAAAACAAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|3 : agagtggggactgcccccggctcctgtacgcccgtttacgttatattaaatctaatagtacgTACGTAATTAA-GGCCTACTTTAATAT-TGTTTT-A-AAGACAGGCTTAGAAAAAATTGCT-TAAATC--------GTATAACAG---CTGATTTA-A-A-T--CTATTGATA----CTAAATTGTTTTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGCC------------------CGATTA--GTCTGGCGCCTC-AAACACTAG--TAGTCCGG---TGC-CACTAATTACATATA-ATAGTCCGGTGCCACCAGATTT-CCCTAGAAAACATAATTATATCGC-AAAACAGCATG-AATAACATCA-TTTGAAT-GTGATAGAACGTTTCTTTG-ATTTTA-CAT-----T-TATCTATAATTAAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAAGATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TTAAG-C-AACTGCA---TGTAA---AAATA-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAACT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATATACCGCTA-C--CA-CGAAAAGTCCGTTG-CTGAGCA-----A-----AAAAAAAA---------AAAAAAAACACGGATAGTCCGTCCCCATTGCACACCGTG
gi|4 : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAAA----GTGATTAA-AAAGT--ATATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CAATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATGT-CCCCAAAAAACATAATTATGTCGG-AAAACAGCACG-AGTACCATCA-TTTAAAT-GTGATAGAACGTATATTTG-TTTTTA-CAT-----T-TATCTAT-A--AAGATATG-TTATTTAT-TTGAAATATTCTTGTATTAGCTGAAA---------------AAATATG-G--TCCGTA-TTTTG-A--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAATA-TCGAG-C-AACTGCA---TGTAG---AAATA-----T-TAAT-----------GCAAAAGCATCTTTAAAATTCCGTAAC--G-TAGAG-----C---------TTTTTAAAA-----A-AAAAT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-AACATATA-CCTTATCGA-TTTGCTAATA------AT-C--CA-CAAAAAGTCCGTTG-CTGAGC------------GA-----G---------AAAAAAAACAAGGATAGT-----CCCATTCCACACCGTGt
gi|5 : cacgcccatgtttacgttatattatatctaatagtatgTACGTAAT--A-------CTC-AATATATGTTT----AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAACG---GGTCTTTA-AGA-TGTCTGTTGATA-------A------GTGTTTAGTGGCC-----ACGTCAACG-ATA-CATGTAGTC------------------TCATTATAGTCTGGTGTCAC-AAACACTTG--TAGTCCGA---TGC-CACTAAC-GC---TA-ATAGTCCGGTGCCACCAAAGTC-CTC-AAAAAACATAATTTTATCGC-AAAACAGCATG-AATAACGTAA-TTTCAAT-GTGATAAAACGTTTCTTTA-TTTTTA-CATATACATGTATCTATAA--A-GATATG-TTATTTAC-TTGAAATGTTCTTGTATTAGCTGAAATTGCATTT-AAA-GCAAATATG-G--TCCGTA-TTTTG-G--TCCGACT-TGGTAGTTTTGTG--TT-----GGTGATTTTGAAGATAATTGAAAATA-TCAAG-C-AACTGCA---TATTG---AGATG-----T-TGAT-----------GCAAAAATATC-TTGAAATT---TAA------AAAG-----GTTT------TTTCC---------ACAAAGT-AT
gi|6 : ttcgaatgaccttttatgtcacttaaaatttagaagcttgcagccccctttcaaaatcagtcctacgctactttaatattcaataatatgtacgttaattatattatacgttttattatatctaataggaGATTAT-AAG-T--CTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTT------------------CGATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---T-----------------------------GCCACCAAATTT-CCCCAAAAAACATGATTATGTCGC-AAAACAGCATG-AATAACATCA-TTTAAAT-GTGATAGAACGTTTCTTTGTTTTTTA-CAT-----T-TATCTAT-A--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCAAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TCAAG-CAAACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCCAA-AAGAAG-AAAATT-GTGA-GACATATA-CCTTATCGA--TTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGCA-----A-----AAAAAACA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCATgc
gi|7 : GGTGCTACCAGAAGC-CCTCAAAAAACATAATTATATCGC-AAAACAGCATG-AATAACATCA-TTTCAATGGTG-TAGAACGTTTCTTTG-TTTTTATTAT-----T-TATCTATAA--AGAATATG-TTATTTATATTGAAAT-TTCTTGTATTAGCT-GAATTGTATTT--AA-GCAAATAAGTG--TCCGTA-TTTTG-G--T-CGATT-TGGTAGTTTTGTG--TG-----GGTGA-TTTGAAGATAA-TGAAAAG---TAAGAC-AACTGCT---TGTAG---AAATA-----T-TATG-----------GCAAAAACATCTTTAAAATT-CGTAAC--G-TAAAG-----CTTTTTTTTATTTTT---------A-AAAGTGATTGAA-G-TATA--ACGCCAA-AAGAAGAAAAATTGGTGACGACATATATCCTTATCGATTTTGCTAA-A------TA-C--CA-CG
gi|8 : TACGTAAT--A-------CTT-AATAT--ATTTT-A-ATGACAGGCTTAGAAAAA-TTGCT-TGAAT---------GTATAAAA----GTGATTAACATG-T--CTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CA------------------------------A--GTCTGATGCCAC-AAACACTAG--TAGTCCGG---------------AC---TG-ATAGTCCGATGCCACCAAAGTC-CTC--AAAAATATAATTATATCGT-AAAACAGCATG-A
gi|9 : aatgaccttttatgtcacttaatttagacccccccaactttcaaatctgttatgttcaatagtatatatacgttaatcatattatacgaaatattatatttaatagggGTA-TTTTG-G--TCCGATT-TGGTACTTTTGTG--TG-----GGTGATTTTGAAGTTAATTGAAAACA-TCAAG-C-AACTGCA---TATAG---AAATGTTAAAT-TAAT-----------GCAAAAACATC-TTAAAAGTCCGTAAC--G-TAAAG-----TTTT------GTTAA---------A-AAAAT-ATTCAA-GTTATA--ACGCC-A-AGAAAGAAAATTT-GTGA-GACACTTA-TCTTATCAA-TTCCCTACTA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGCACGCTTAGTCTGGAAACGCG---------TAAAATAACACGGGAAATCCGTCCCCATTCCACACCGTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGCTCGAGATGTCATTGTATAGGCCACTTATTAACAGTCTCCGCGCGCACTTTAGAAAATCAGTCCGACGCCTCCTGTAATTTCCATAGTTATATAGATTTATTATTAATTATACGTTATTTTTATTCTAATAGGATACGTTAATACTTAATTATAT
Unaligned ( gi|13 ): TGCTCGAGATGTCATTACTATGCCCTTATTTAAAGTCCCGCCGACTTTTGGAAAATCAGTCGACGCCTGCTGTAATGTTCCATAGTTATATATGATTTATTATAATTATACGTATTATTTATATCTAATAGGGATACGTTAATACTTAATTATAT
Unaligned ( gi|17 ): CTTATTTTTTTTTATATAACTTTTGCCGCTTATCAAGTACGTTCCATACCAGGTGATTTTAGA
Unaligned ( gi|18 ): ATAAAATCACGGATGGGAGGCATGGGTCCCACTCCAAGGCGCTTGTTT
Alignments
lowQualScore : 111111 333333333 222222 1111 11111 1111111 11111 444444444444444444 1111111 111111 1111111 1 1 11111 11111 11111111111 111111 111111 22222222222 111111 6666666666666666666666666666666
lowQualScore : 999999 6 6 888 6 6 333333333 666666 8888 1 0 22222 7777777 44444 5 5 222222222222222222 77 5 77 1111111 222222 5 1 0 0 5 4 5 5 1 5 5 1 77 5 4444444 5 77 0 5 5 1 5 4 5 66 4 4 55 4 55 00000 1 3 3 3 777 777 00000 4 99999999999 3 55 4 0 000000 111111 44444444444 4 1 4 4 66 8 4 4 4 4 4 111111 4 55 4 4 4 5555555555555555555555555555555 1
lowQualScore : ...... . . ... . . ......... ...... .... . . ..... ....... ..... . . .................. .. . .. ....... ...... . . . . . . . . . . . . .. . ....... . .. . . . . . . . .. . . .. . .. ..... . . . . ... ... ..... . ........... . .. . . ...... ...... ........... . . . . .. . . . . . . ...... . .. . . . ............................... .
lowQualScore : 888888 7 7 333 7 7 333333333 888888 6666 0 1 33333 9999999 33333 7 7 111111111111111111 99 7 99 6666666 999999 7 4 7 2 0 5 0 7 0 7 7 4 33 7 4444444 7 99 1 7 7 4 0 2 0 99 0 0 55 0 55 00000 0 6 6 6 000 000 00000 0 00000000000 8 55 0 8 777777 555555 77777777777 0 1 4 4 11 9 4 4 4 4 0 555555 0 55 0 4 4 9999999999999999999999999999999 9
consensus : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-AG---GTGATT-AA-ANGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATGTT-ATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAAG-CGAATATG-G--TCCGTA-TTTTG-GT--CCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAG--CG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
Reference ( family-1856 ) : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-AG---GTGATT-NA-ANGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATGTT-ATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAAG-CGAATATG-G--TCCGTA-TTTTG-GT--CCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AGAAAAG--CG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|1 : TACGTAAG--ATAGCCTACTT-A-TAT-TGTTTTTACAAGACAG-CTTAGAAAAA-TTGCTCTAAATCGCTATAAGGTATACA-AGTCTATGAAT-TA-ATGTCC-TTGATGGGCCTCAA--------ATCTCGTAGCTCTTATACATGAATTTATAGTATGTAGTCTATGTGTCTCGCACTCTACGATAC--GTCTGGTGCCACTAAGCACTCGCCTAGTCCGGAATTGCGCACTAGC--C---TGGAT-GTC-GGTGCAAC--AATTAGCTCCAAAAAACGTATATATGTCGCAAAAACAGCATGAAATAACATCATTTTAAAT-GTGATAGAACCTTTCT----------------------ATCTATTA--AAGATATGTTTATTTAT-TTGAAAT-TTCT-GTAT-AGCTGGAATTGTATTTAAAAGGCCAATTTG-GGTCCCGTACTTTTG-GTATTCGATTGTGGT-GCTTTCTGCTTGTCAGTGGTGATTTAACAGATAATTGAACAAATTCAAG-C-AACTGCATCGTGTAGCACAAGTA-----TCTAATACTCCGCTGTCACAAAAACATCTTC--AATTCCGTAACCTGTTAAAG-----CTTT------TTTTTTTTTTTTAAA-AAAGT-TTGGAATG-TATATTACGCC-ACAGGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTACTAAT-------TA-C--CATCGAAAAGTCCGTTGCCTGAGC-A----------AAAA----------------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGT
gi|10 : gagagggggactgcctctccccggctcctatagccaatgtttttacgcttatattatatagatctaatcaagtatTAATTGAAAACA-TCAAG-C-AATTGCA---TATAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAT--G-TAAAG-----CTTT------TTTTA---------A-AAAGT-ATT-------------C------AAGAAGAAAATTT-GTGA-GACGCTTA-TCTTTTCAA-TTCTCTACTA------TA-C--CA-CGAAAAGTCCGTTG-TTGAGC-ACGCTTAGTCTGGAAACG--CG---------TAAAATAACACGGAAAGTCCGTCCCCATTCCACACCGTG
gi|11 : ttTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGGAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--CA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCAT
gi|14 : CGA-TTTCCTAGTA------CAACTACA-CACAAAGTCCGTTG-CTGAGC-A----------CGTTTAGTCTG-------------GAAACGCAGAAAATCCGTCCCCATTCGGCACCG
gi|15 : AAAA-TGAATGAA-A--TCCGTA-TTTTTTGT--CTGCTT-TGGTACCTTTGTG--AG-----GACGATTGTACAAATAATTGACAATA-TCAAG-C-
gi|16 : tTA-TTTTG-GT--CCGATT-TGGTAGTTTAGTG--TG-----GTTGATTTTAAAGATTATTGAAAAGA-TCAAG-C-A
gi|2 : TACGTAAT--A-AACCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGTT-TAAAT---------GTATAAA-A----GTGATTAAA-AAGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ACG-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCCAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACACCATTTCAA-T-GTGATAGA--------------------AT-----T-TATCTAT-A--AAGATATGCT-ATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATCGTATTTAAAAG-CAAATATG-G--TCCGTG-TTTTG-GT--CCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTTAAAAGA-TCAAG-C-AACTGCA---AGTAG---AAATG-----T-TAAT-----------GTAAAAACATCTTTAAAATTCCGTAAC--G-TAAAGTCATATTTT------TTTTT---------A-----------------ATA--ACGCC-A-AAGAAGAACAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGCAA----------AAAAAAA--CAAAACAAAACAAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|3 : agagtggggactgcccccggctcctgtacgcccgtttacgttatattaaatctaatagtacgTACGTAATTAA-GGCCTACTTTAATAT-TGTTTT-A-AAGACAGGCTTAGAAAAAATTGCT-TAAATC--------GTATAAC-AG---CTGATT-TA-AA-TCTATTGATA----CTAAATTGTTTTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGCC------------------CGATTA--GTCTGGCGCCTC-AAACACTAG--TAGTCCGG---TGC-CACTAATTACATATA-ATAGTCCGGTGCCACCAGATTT-CCCTAGAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTGAA-T-GTGATAGAACGTTTCTTTG-ATTTTA-CAT-----T-TATCTATAATTAAGATATGTT-ATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAAG-CGAAGATG-G--TCCGTA-TTTTG-GT--CCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TTAAG-C-AACTGCA---TGTAA---AAATA-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAACT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATATACCGCTA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--AA---------AAAAAAAACACGGATAGTCCGTCCCCATTGCACACCGTG
gi|4 : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-A----GTGATTAAA-AAGTATATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CAATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATGT-CCCCAAAAAACATAATTATGTCGGAAAA-CAGCACGAG-TACCATCATTTAAA-T-GTGATAGAACGTATATTTG-TTTTTA-CAT-----T-TATCTAT-A--AAGATATGTT-ATTTAT-TTGAAATATTCTTGTATTAGCTG-----------AAAA----AATATG-G--TCCGTA-TTTTG-AT--CCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAATA-TCGAG-C-AACTGCA---TGTAG---AAATA-----T-TAAT-----------GCAAAAGCATCTTTAAAATTCCGTAAC--G-TAGAG-----C---------TTTTTAAAA-----A-AAAAT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-AACATATA-CCTTATCGA-TTTGCTAATA------AT-C--CA-CAAAAAGTCCGTTG-CTGAGC-G----------A---------G---------AAAAAAAACAAGGATAGT-----CCCATTCCACACCGTGt
gi|5 : cacgcccatgtttacgttatattatatctaatagtatgTACGTAAT--A-------CTC-AATATATGTTT----AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAACGG---GTCTTT-AAGATGTCTGTTGATA-------A------GTGTTTAGTGGCC-----ACGTCAACG-ATA-CATGTAGTC------------------TCATTATAGTCTGGTGTCAC-AAACACTTG--TAGTCCGA---TGC-CACTAAC-GC---TA-ATAGTCCGGTGCCACCAAAGTC-CTC-AAAAAACATAATTTTATCGCAAAA-CAGCATGAA-TAACGTAATTTCAA-T-GTGATAAAACGTTTCTTTA-TTTTTA-CATATACATGTATCTATAA--A-GATATGTT-ATTTAC-TTGAAATGTTCTTGTATTAGCTGAAATTGCATTTAAA-G-CAAATATG-G--TCCGTA-TTTTG-GT--CCGACT-TGGTAGTTTTGTG--TT-----GGTGATTTTGAAGATAATTGAAAATA-TCAAG-C-AACTGCA---TATTG---AGATG-----T-TGAT-----------GCAAAAATATC-TTGAAATT---TAA------AAAG-----GTTT------TTTCC---------ACAAAGT-AT
gi|6 : ttcgaatgaccttttatgtcacttaaaatttagaagcttgcagccccctttcaaaatcagtcctacgctactttaatattcaataatatgtacgttaattatattatacgttttattatatctaataggaGATT-AT-AAGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTT------------------CGATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---T-----------------------------GCCACCAAATTT-CCCCAAAAAACATGATTATGTCGCAAAA-CAGCATGAA-TAACATCATTTAAA-T-GTGATAGAACGTTTCTTTGTTTTTTA-CAT-----T-TATCTAT-A--AAGATATGTT-ATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAAG-CAAATATG-G--TCCGTA-TTTTG-GT--CCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TCAAG-CAAACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCCAA-AAGAAG-AAAATT-GTGA-GACATATA-CCTTATCGA--TTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--CA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCATgc
gi|7 : GGTGCTACCAGAAGC-CCTCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTCAA-TGGTG-TAGAACGTTTCTTTG-TTTTTATTAT-----T-TATCTATAA--AGAATATGTT-ATTTATATTGAAAT-TTCTTGTATTAGCT-GAATTGTATTT--AAG-CAAATAAGTG--TCCGTA-TTTTG-GT---CGATT-TGGTAGTTTTGTG--TG-----GGTGA-TTTGAAGATAA-TGAAAAG---TAAGAC-AACTGCT---TGTAG---AAATA-----T-TATG-----------GCAAAAACATCTTTAAAATT-CGTAAC--G-TAAAG-----CTTTTTTTTATTTTT---------A-AAAGTGATTGAA-G-TATA--ACGCCAA-AAGAAGAAAAATTGGTGACGACATATATCCTTATCGATTTTGCTAA-A------TA-C--CA-CG
gi|8 : TACGTAAT--A-------CTT-AATAT--ATTTT-A-ATGACAGGCTTAGAAAAA-TTGCT-TGAAT---------GTATAAA-A----GTGATT-AACATGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CA------------------------------A--GTCTGATGCCAC-AAACACTAG--TAGTCCGG---------------AC---TG-ATAGTCCGATGCCACCAAAGTC-CTC--AAAAATATAATTATATCGTAAAA-CAGCATGA
gi|9 : aatgaccttttatgtcacttaatttagacccccccaactttcaaatctgttatgttcaatagtatatatacgttaatcatattatacgaaatattatatttaatagggGTA-TTTTG-GT--CCGATT-TGGTACTTTTGTG--TG-----GGTGATTTTGAAGTTAATTGAAAACA-TCAAG-C-AACTGCA---TATAG---AAATGTTAAAT-TAAT-----------GCAAAAACATC-TTAAAAGTCCGTAAC--G-TAAAG-----TTTT------GTTAA---------A-AAAAT-ATTCAA-GTTATA--ACGCC-A-AGAAAGAAAATTT-GTGA-GACACTTA-TCTTATCAA-TTCCCTACTA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGC-ACGCTTAGTCTGGAAACG--CG---------TAAAATAACACGGGAAATCCGTCCCCATTCCACACCGTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGCTCGAGATGTCATTGTATAGGCCACTTATTAACAGTCTCCGCGCGCACTTTAGAAAATCAGTCCGACGCCTCCTGTAATTTCCATAGTTATATAGATTTATTATTAATTATACGTTATTTTTATTCTAATAGGATACGTTAATACTTAATTATAT
Unaligned ( gi|13 ): TGCTCGAGATGTCATTACTATGCCCTTATTTAAAGTCCCGCCGACTTTTGGAAAATCAGTCGACGCCTGCTGTAATGTTCCATAGTTATATATGATTTATTATAATTATACGTATTATTTATATCTAATAGGGATACGTTAATACTTAATTATAT
Unaligned ( gi|17 ): CTTATTTTTTTTTATATAACTTTTGCCGCTTATCAAGTACGTTCCATACCAGGTGATTTTAGA
Unaligned ( gi|18 ): ATAAAATCACGGATGGGAGGCATGGGTCCCACTCCAAGGCGCTTGTTT
Alignments
lowQualScore : 111111 333333333 222222 1111 11111 1111111 11111 444444444444444444 1111111 111111 1111111 1 1 11111 11111 11111111111 111111 111111 22222222222 111111 6666666666666666666666666666666
lowQualScore : 999999 6 6 888 6 6 333333333 666666 6666 1 0 22222 7777777 44444 5 5 222222222222222222 77 5 77 1111111 222222 5 1 0 0 5 4 5 5 1 5 5 1 77 5 4444444 5 77 0 5 5 1 5 4 5 66 4 4 55 4 55 00000 1 3 3 3 777 777 00000 4 99999999999 3 55 4 0 000000 111111 44444444444 4 1 4 4 66 8 4 4 4 4 4 111111 4 55 4 4 4 2222222222222222222222222222222 1
lowQualScore : ...... . . ... . . ......... ...... .... . . ..... ....... ..... . . .................. .. . .. ....... ...... . . . . . . . . . . . . .. . ....... . .. . . . . . . . .. . . .. . .. ..... . . . . ... ... ..... . ........... . .. . . ...... ...... ........... . . . . .. . . . . . . ...... . .. . . . ............................... .
lowQualScore : 888888 7 7 333 7 7 333333333 888888 0000 0 1 33333 9999999 33333 7 7 111111111111111111 99 7 99 6666666 999999 7 4 7 2 0 5 0 7 0 7 7 4 33 7 4444444 7 99 1 7 7 4 0 2 0 99 0 0 55 0 55 00000 0 6 6 6 000 000 00000 0 00000000000 8 55 0 8 777777 555555 77777777777 0 1 4 4 11 9 4 4 4 4 0 555555 0 55 0 4 4 9999999999999999999999999999999 9
consensus : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-AG---GTGATT-AA-ANGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAG--CG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
Reference ( family-1856 ) : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-AG---GTGATT-AA-ANGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAG--CG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|1 : TACGTAAG--ATAGCCTACTT-A-TAT-TGTTTTTACAAGACAG-CTTAGAAAAA-TTGCTCTAAATCGCTATAAGGTATACA-AGTCTATGAAT-TA-ATGTCC-TTGATGGGCCTCAA--------ATCTCGTAGCTCTTATACATGAATTTATAGTATGTAGTCTATGTGTCTCGCACTCTACGATAC--GTCTGGTGCCACTAAGCACTCGCCTAGTCCGGAATTGCGCACTAGC--C---TGGAT-GTC-GGTGCAAC--AATTAGCTCCAAAAAACGTATATATGTCGCAAAAACAGCATGAAATAACATCATTTTAAAT-GTGATAGAACCTTTC----------------------TATCTATTA--AAGATATGTTTATTTAT-TTGAAAT-TTC-TGTA-TAGCTGGAATTGTATTTAAAAGGCCAATTTG-GGTCCCGTACTTTTG-GTATTCGATTGTGGT-GCTTTCTGCTTGTCAGTGGTGATTTAACAGATAATTGAACAAATTCAAG-C-AACTGCATCGTGTAGCACAAGTA-----TCTAATACTCCGCTGTCACAAAAACATCTTC--AATTCCGTAACCTGTTAAAG-----CTTT------TTTTTTTTTTTTAAA-AAAGT-TTGGAATG-TATATTACGCC-ACAGGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTACTAAT-------TA-C--CATCGAAAAGTCCGTTGCCTGAGC-A----------AAAA----------------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGT
gi|10 : gagagggggactgcctctccccggctcctatagccaatgtttttacgcttatattatatagatctaatcaagtatTAATTGAAAACA-TCAAG-C-AATTGCA---TATAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAT--G-TAAAG-----CTTT------TTTTA---------A-AAAGT-ATT----------------C-A-A-GAAGAAAATTT-GTGA-GACGCTTA-TCTTTTCAA-TTCTCTACTA------TA-C--CA-CGAAAAGTCCGTTG-TTGAGC-ACGCTTAGTCTGGAAACG--CG---------TAAAATAACACGGAAAGTCCGTCCCCATTCCACACCGTG
gi|11 : ttTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGGAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--CA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCAT
gi|14 : CGA-TTTCCTAGTA------CAACTACA-CACAAAGTCCGTTG-CTGAGC-A----------CGTTTAGTCTG-------------GAAACGCAGAAAATCCGTCCCCATTCGGCACCG
gi|15 : AAA-ATGAATGAA-A--TCCGTA-TTTTTTG--TCTGCTT-TGGTACCTTTGTG--AG-----GACGATTGTACAAATAATTGACAATA-TCAAG-C-
gi|16 : tTA-TTTTG-G--TCCGATT-TGGTAGTTTAGTG--TG-----GTTGATTTTAAAGATTATTGAAAAGA-TCAAG-C-A
gi|2 : TACGTAAT--A-AACCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGTT-TAAAT---------GTATAAA-A----GTGATTAAA-AAGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ACG-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCCAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACACCATTTCAA-T-GTGATAGA--------------------AT-----T-TATCTAT-A--AAGATATG-CTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATCGTATTTAAAA-GCAAATATG-G--TCCGTG-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTTAAAAGA-TCAAG-C-AACTGCA---AGTAG---AAATG-----T-TAAT-----------GTAAAAACATCTTTAAAATTCCGTAAC--G-TAAAGTCATATTTT------TTTTT---------A-----------------ATA--ACGCC-A-AAGAAGAACAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGCAA----------AAAAAAA--CAAAACAAAACAAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|3 : agagtggggactgcccccggctcctgtacgcccgtttacgttatattaaatctaatagtacgTACGTAATTAA-GGCCTACTTTAATAT-TGTTTT-A-AAGACAGGCTTAGAAAAAATTGCT-TAAATC--------GTATAAC-AG---CTGATT-TA-AA-TCTATTGATA----CTAAATTGTTTTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGCC------------------CGATTA--GTCTGGCGCCTC-AAACACTAG--TAGTCCGG---TGC-CACTAATTACATATA-ATAGTCCGGTGCCACCAGATTT-CCCTAGAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTGAA-T-GTGATAGAACGTTTCTTTG-ATTTTA-CAT-----T-TATCTATAATTAAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAAGATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TTAAG-C-AACTGCA---TGTAA---AAATA-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAACT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATATACCGCTA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--AA---------AAAAAAAACACGGATAGTCCGTCCCCATTGCACACCGTG
gi|4 : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-A----GTGATTAAA-AAGTATATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CAATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATGT-CCCCAAAAAACATAATTATGTCGGAAAA-CAGCACGAG-TACCATCATTTAAA-T-GTGATAGAACGTATATTTG-TTTTTA-CAT-----T-TATCTAT-A--AAGATATG-TTATTTAT-TTGAAATATTCTTGTATTAGCTG-----------AAAA----AATATG-G--TCCGTA-TTTTG-A--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAATA-TCGAG-C-AACTGCA---TGTAG---AAATA-----T-TAAT-----------GCAAAAGCATCTTTAAAATTCCGTAAC--G-TAGAG-----C---------TTTTTAAAA-----A-AAAAT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-AACATATA-CCTTATCGA-TTTGCTAATA------AT-C--CA-CAAAAAGTCCGTTG-CTGAGC-G----------A---------G---------AAAAAAAACAAGGATAGT-----CCCATTCCACACCGTGt
gi|5 : cacgcccatgtttacgttatattatatctaatagtatgTACGTAAT--A-------CTC-AATATATGTTT----AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAACGG---GTCTTT-AAGATGTCTGTTGATA-------A------GTGTTTAGTGGCC-----ACGTCAACG-ATA-CATGTAGTC------------------TCATTATAGTCTGGTGTCAC-AAACACTTG--TAGTCCGA---TGC-CACTAAC-GC---TA-ATAGTCCGGTGCCACCAAAGTC-CTC-AAAAAACATAATTTTATCGCAAAA-CAGCATGAA-TAACGTAATTTCAA-T-GTGATAAAACGTTTCTTTA-TTTTTA-CATATACATGTATCTATAA--A-GATATG-TTATTTAC-TTGAAATGTTCTTGTATTAGCTGAAATTGCATTTAAA--GCAAATATG-G--TCCGTA-TTTTG-G--TCCGACT-TGGTAGTTTTGTG--TT-----GGTGATTTTGAAGATAATTGAAAATA-TCAAG-C-AACTGCA---TATTG---AGATG-----T-TGAT-----------GCAAAAATATC-TTGAAATT---TAA------AAAG-----GTTT------TTTCC---------ACAAAGT-AT
gi|6 : ttcgaatgaccttttatgtcacttaaaatttagaagcttgcagccccctttcaaaatcagtcctacgctactttaatattcaataatatgtacgttaattatattatacgttttattatatctaataggaGATT-AT-AAGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTT------------------CGATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---T-----------------------------GCCACCAAATTT-CCCCAAAAAACATGATTATGTCGCAAAA-CAGCATGAA-TAACATCATTTAAA-T-GTGATAGAACGTTTCTTTGTTTTTTA-CAT-----T-TATCTAT-A--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCAAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TCAAG-CAAACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCCAA-AAGAAG-AAAATT-GTGA-GACATATA-CCTTATCGA--TTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--CA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCATgc
gi|7 : GGTGCTACCAGAAGC-CCTCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTCAA-TGGTG-TAGAACGTTTCTTTG-TTTTTATTAT-----T-TATCTATAA--AGAATATG-TTATTTATATTGAAAT-TTCTTGTATTAGCT-GAATTGTATTT--AA-GCAAATAAGTG--TCCGTA-TTTTG-G--T-CGATT-TGGTAGTTTTGTG--TG-----GGTGA-TTTGAAGATAA-TGAAAAG---TAAGAC-AACTGCT---TGTAG---AAATA-----T-TATG-----------GCAAAAACATCTTTAAAATT-CGTAAC--G-TAAAG-----CTTTTTTTTATTTTT---------A-AAAGTGATTGAA-G-TATA--ACGCCAA-AAGAAGAAAAATTGGTGACGACATATATCCTTATCGATTTTGCTAA-A------TA-C--CA-CG
gi|8 : TACGTAAT--A-------CTT-AATAT--ATTTT-A-ATGACAGGCTTAGAAAAA-TTGCT-TGAAT---------GTATAAA-A----GTGATT-AACATGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CA------------------------------A--GTCTGATGCCAC-AAACACTAG--TAGTCCGG---------------AC---TG-ATAGTCCGATGCCACCAAAGTC-CTC--AAAAATATAATTATATCGTAAAA-CAGCATGA
gi|9 : aatgaccttttatgtcacttaatttagacccccccaactttcaaatctgttatgttcaatagtatatatacgttaatcatattatacgaaatattatatttaatagggGTA-TTTTG-G--TCCGATT-TGGTACTTTTGTG--TG-----GGTGATTTTGAAGTTAATTGAAAACA-TCAAG-C-AACTGCA---TATAG---AAATGTTAAAT-TAAT-----------GCAAAAACATC-TTAAAAGTCCGTAAC--G-TAAAG-----TTTT------GTTAA---------A-AAAAT-ATTCAA-GTTATA--ACGCC-A-AGAAAGAAAATTT-GTGA-GACACTTA-TCTTATCAA-TTCCCTACTA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGC-ACGCTTAGTCTGGAAACG--CG---------TAAAATAACACGGGAAATCCGTCCCCATTCCACACCGTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGCTCGAGATGTCATTGTATAGGCCACTTATTAACAGTCTCCGCGCGCACTTTAGAAAATCAGTCCGACGCCTCCTGTAATTTCCATAGTTATATAGATTTATTATTAATTATACGTTATTTTTATTCTAATAGGATACGTTAATACTTAATTATAT
Unaligned ( gi|13 ): TGCTCGAGATGTCATTACTATGCCCTTATTTAAAGTCCCGCCGACTTTTGGAAAATCAGTCGACGCCTGCTGTAATGTTCCATAGTTATATATGATTTATTATAATTATACGTATTATTTATATCTAATAGGGATACGTTAATACTTAATTATAT
Unaligned ( gi|17 ): CTTATTTTTTTTTATATAACTTTTGCCGCTTATCAAGTACGTTCCATACCAGGTGATTTTAGA
Unaligned ( gi|18 ): ATAAAATCACGGATGGGAGGCATGGGTCCCACTCCAAGGCGCTTGTTT
Alignments
lowQualScore : 111111 333333333 222222 1111 11111 1111111 11111 444444444444444444 1111111 111111 1111111 1 1 11111 11111 11111111111 111111 111111 22222222222 111111 6666666666666666666666666666666
lowQualScore : 999999 6 6 888 6 6 333333333 666666 6666 1 0 22222 7777777 44444 5 5 222222222222222222 77 5 77 1111111 222222 5 1 0 0 5 4 5 5 1 5 5 1 77 5 4444444 5 77 0 5 5 1 5 4 5 66 4 4 55 4 55 00000 1 3 3 3 777 777 00000 4 99999999999 3 55 4 0 000000 111111 44444444444 4 1 4 4 66 8 4 4 4 4 4 111111 4 55 4 4 4 2222222222222222222222222222222 1
lowQualScore : ...... . . ... . . ......... ...... .... . . ..... ....... ..... . . .................. .. . .. ....... ...... . . . . . . . . . . . . .. . ....... . .. . . . . . . . .. . . .. . .. ..... . . . . ... ... ..... . ........... . .. . . ...... ...... ........... . . . . .. . . . . . . ...... . .. . . . ............................... .
lowQualScore : 888888 7 7 333 7 7 333333333 888888 0000 0 1 33333 9999999 33333 7 7 111111111111111111 99 7 99 6666666 999999 7 4 7 2 0 5 0 7 0 7 7 4 33 7 4444444 7 99 1 7 7 4 0 2 0 99 0 0 55 0 55 00000 0 6 6 6 000 000 00000 0 00000000000 8 55 0 8 777777 555555 77777777777 0 1 4 4 11 9 4 4 4 4 0 555555 0 55 0 4 4 9999999999999999999999999999999 9
consensus : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-AG---GTGATT-AA-ANGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAG--CG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
Reference ( family-1856 ) : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-AG---GTGATT-AA-ANGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAG--CG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|1 : TACGTAAG--ATAGCCTACTT-A-TAT-TGTTTTTACAAGACAG-CTTAGAAAAA-TTGCTCTAAATCGCTATAAGGTATACA-AGTCTATGAAT-TA-ATGTCC-TTGATGGGCCTCAA--------ATCTCGTAGCTCTTATACATGAATTTATAGTATGTAGTCTATGTGTCTCGCACTCTACGATAC--GTCTGGTGCCACTAAGCACTCGCCTAGTCCGGAATTGCGCACTAGC--C---TGGAT-GTC-GGTGCAAC--AATTAGCTCCAAAAAACGTATATATGTCGCAAAAACAGCATGAAATAACATCATTTTAAAT-GTGATAGAACCTTTC----------------------TATCTATTA--AAGATATGTTTATTTAT-TTGAAAT-TTC-TGTA-TAGCTGGAATTGTATTTAAAAGGCCAATTTG-GGTCCCGTACTTTTG-GTATTCGATTGTGGT-GCTTTCTGCTTGTCAGTGGTGATTTAACAGATAATTGAACAAATTCAAG-C-AACTGCATCGTGTAGCACAAGTA-----TCTAATACTCCGCTGTCACAAAAACATCTTC--AATTCCGTAACCTGTTAAAG-----CTTT------TTTTTTTTTTTTAAA-AAAGT-TTGGAATG-TATATTACGCC-ACAGGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTACTAAT-------TA-C--CATCGAAAAGTCCGTTGCCTGAGC-A----------AAAA----------------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGT
gi|10 : gagagggggactgcctctccccggctcctatagccaatgtttttacgcttatattatatagatctaatcaagtatTAATTGAAAACA-TCAAG-C-AATTGCA---TATAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAT--G-TAAAG-----CTTT------TTTTA---------A-AAAGT-ATT----------------C-A-A-GAAGAAAATTT-GTGA-GACGCTTA-TCTTTTCAA-TTCTCTACTA------TA-C--CA-CGAAAAGTCCGTTG-TTGAGC-ACGCTTAGTCTGGAAACG--CG---------TAAAATAACACGGAAAGTCCGTCCCCATTCCACACCGTG
gi|11 : ttTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGGAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--CA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCAT
gi|14 : CGA-TTTCCTAGTA------CAACTACA-CACAAAGTCCGTTG-CTGAGC-A----------CGTTTAGTCTG-------------GAAACGCAGAAAATCCGTCCCCATTCGGCACCG
gi|15 : AAA-ATGAATGAA-A--TCCGTA-TTTTTTG--TCTGCTT-TGGTACCTTTGTG--AG-----GACGATTGTACAAATAATTGACAATA-TCAAG-C-
gi|16 : tTA-TTTTG-G--TCCGATT-TGGTAGTTTAGTG--TG-----GTTGATTTTAAAGATTATTGAAAAGA-TCAAG-C-A
gi|2 : TACGTAAT--A-AACCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGTT-TAAAT---------GTATAAA-A----GTGATTAAA-AAGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ACG-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCCAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACACCATTTCAA-T-GTGATAGA--------------------AT-----T-TATCTAT-A--AAGATATG-CTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATCGTATTTAAAA-GCAAATATG-G--TCCGTG-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTTAAAAGA-TCAAG-C-AACTGCA---AGTAG---AAATG-----T-TAAT-----------GTAAAAACATCTTTAAAATTCCGTAAC--G-TAAAGTCATATTTT------TTTTT---------A-----------------ATA--ACGCC-A-AAGAAGAACAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGCAA----------AAAAAAA--CAAAACAAAACAAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|3 : agagtggggactgcccccggctcctgtacgcccgtttacgttatattaaatctaatagtacgTACGTAATTAA-GGCCTACTTTAATAT-TGTTTT-A-AAGACAGGCTTAGAAAAAATTGCT-TAAATC--------GTATAAC-AG---CTGATT-TA-AA-TCTATTGATA----CTAAATTGTTTTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGCC------------------CGATTA--GTCTGGCGCCTC-AAACACTAG--TAGTCCGG---TGC-CACTAATTACATATA-ATAGTCCGGTGCCACCAGATTT-CCCTAGAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTGAA-T-GTGATAGAACGTTTCTTTG-ATTTTA-CAT-----T-TATCTATAATTAAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAAGATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TTAAG-C-AACTGCA---TGTAA---AAATA-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAACT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATATACCGCTA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--AA---------AAAAAAAACACGGATAGTCCGTCCCCATTGCACACCGTG
gi|4 : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-A----GTGATTAAA-AAGTATATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CAATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATGT-CCCCAAAAAACATAATTATGTCGGAAAA-CAGCACGAG-TACCATCATTTAAA-T-GTGATAGAACGTATATTTG-TTTTTA-CAT-----T-TATCTAT-A--AAGATATG-TTATTTAT-TTGAAATATTCTTGTATTAGCTG-----------AAAA----AATATG-G--TCCGTA-TTTTG-A--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAATA-TCGAG-C-AACTGCA---TGTAG---AAATA-----T-TAAT-----------GCAAAAGCATCTTTAAAATTCCGTAAC--G-TAGAG-----C---------TTTTTAAAA-----A-AAAAT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-AACATATA-CCTTATCGA-TTTGCTAATA------AT-C--CA-CAAAAAGTCCGTTG-CTGAGC-G----------A---------G---------AAAAAAAACAAGGATAGT-----CCCATTCCACACCGTGt
gi|5 : cacgcccatgtttacgttatattatatctaatagtatgTACGTAAT--A-------CTC-AATATATGTTT----AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAACGG---GTCTTT-AAGATGTCTGTTGATA-------A------GTGTTTAGTGGCC-----ACGTCAACG-ATA-CATGTAGTC------------------TCATTATAGTCTGGTGTCAC-AAACACTTG--TAGTCCGA---TGC-CACTAAC-GC---TA-ATAGTCCGGTGCCACCAAAGTC-CTC-AAAAAACATAATTTTATCGCAAAA-CAGCATGAA-TAACGTAATTTCAA-T-GTGATAAAACGTTTCTTTA-TTTTTA-CATATACATGTATCTATAA--A-GATATG-TTATTTAC-TTGAAATGTTCTTGTATTAGCTGAAATTGCATTTAAA--GCAAATATG-G--TCCGTA-TTTTG-G--TCCGACT-TGGTAGTTTTGTG--TT-----GGTGATTTTGAAGATAATTGAAAATA-TCAAG-C-AACTGCA---TATTG---AGATG-----T-TGAT-----------GCAAAAATATC-TTGAAATT---TAA------AAAG-----GTTT------TTTCC---------ACAAAGT-AT
gi|6 : ttcgaatgaccttttatgtcacttaaaatttagaagcttgcagccccctttcaaaatcagtcctacgctactttaatattcaataatatgtacgttaattatattatacgttttattatatctaataggaGATT-AT-AAGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTT------------------CGATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---T-----------------------------GCCACCAAATTT-CCCCAAAAAACATGATTATGTCGCAAAA-CAGCATGAA-TAACATCATTTAAA-T-GTGATAGAACGTTTCTTTGTTTTTTA-CAT-----T-TATCTAT-A--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCAAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TCAAG-CAAACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCCAA-AAGAAG-AAAATT-GTGA-GACATATA-CCTTATCGA--TTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--CA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCATgc
gi|7 : GGTGCTACCAGAAGC-CCTCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTCAA-TGGTG-TAGAACGTTTCTTTG-TTTTTATTAT-----T-TATCTATAA--AGAATATG-TTATTTATATTGAAAT-TTCTTGTATTAGCT-GAATTGTATTT--AA-GCAAATAAGTG--TCCGTA-TTTTG-G--T-CGATT-TGGTAGTTTTGTG--TG-----GGTGA-TTTGAAGATAA-TGAAAAG---TAAGAC-AACTGCT---TGTAG---AAATA-----T-TATG-----------GCAAAAACATCTTTAAAATT-CGTAAC--G-TAAAG-----CTTTTTTTTATTTTT---------A-AAAGTGATTGAA-G-TATA--ACGCCAA-AAGAAGAAAAATTGGTGACGACATATATCCTTATCGATTTTGCTAA-A------TA-C--CA-CG
gi|8 : TACGTAAT--A-------CTT-AATAT--ATTTT-A-ATGACAGGCTTAGAAAAA-TTGCT-TGAAT---------GTATAAA-A----GTGATT-AACATGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CA------------------------------A--GTCTGATGCCAC-AAACACTAG--TAGTCCGG---------------AC---TG-ATAGTCCGATGCCACCAAAGTC-CTC--AAAAATATAATTATATCGTAAAA-CAGCATGA
gi|9 : aatgaccttttatgtcacttaatttagacccccccaactttcaaatctgttatgttcaatagtatatatacgttaatcatattatacgaaatattatatttaatagggGTA-TTTTG-G--TCCGATT-TGGTACTTTTGTG--TG-----GGTGATTTTGAAGTTAATTGAAAACA-TCAAG-C-AACTGCA---TATAG---AAATGTTAAAT-TAAT-----------GCAAAAACATC-TTAAAAGTCCGTAAC--G-TAAAG-----TTTT------GTTAA---------A-AAAAT-ATTCAA-GTTATA--ACGCC-A-AGAAAGAAAATTT-GTGA-GACACTTA-TCTTATCAA-TTCCCTACTA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGC-ACGCTTAGTCTGGAAACG--CG---------TAAAATAACACGGGAAATCCGTCCCCATTCCACACCGTG
blockSeqs : TAAGG T A A A . C CGG AAA A T ATTGTTT . . . . TA . . TGC TACATA . A . C . . C . G T TT T ATACATG A TT . A C . G T . . T . . . . C . A A . . TTAAA . . T . . TCATAT TTTTTA AAAAA G G . T . A . G C T T TACCGC A TA . . A CGCTTAGTCTGGAAACGCGT A
blockSeqs : AAA . . A . . . AG AAA A C T . . . . . . . TGC AC . A . T . . G . . T A . T A . . . C . A . . . . . . . . T . . . . . . . . C . . C . AC . G . . . A . . . . . . . . . . . CGCTTAGTCTGGAAACGCGT A
blockSeqs : AGG . . A . . . A AAG A T T . . . . . . . TGC AC . A . C . . A . . T T . T A . . . A . G . . . . . . . . G . . . . . . . . T . . C . A . G . . . . . . . . . . . . . . . AAAAAAACAAAACAAAACA A
blockSeqs : A . . A . . . A AAC T T G . . . . . . . TGC GC . A . C . . C . . T T . T . . . . G . A . . . . . . . . G . . . . . . . . T . . C . T . G . . . . . . . . . . . . . . . CGTTTAGTCTG A
blockSeqs : A . . . . . . A TA A T T . . . . . . . T AC . A . C . . A . . T T . T . . . . C . A . . . . . . . . G . . . . . . . . T . . G . A . G . . . . . . . . . . . . . . . AAAAAAACAA A
blockSeqs : AT T . T . . . . . . . . . . . . . . . C . . . . . T . . . . . . A . . . . . . . . T . . . . . . . . C . . C . A . C . . . . . . . . . . . . . . . AAAAAAAAAA A
blockSeqs : . . . . . . . . . . . . . T . . . . . . . . T . . T . T . . . . . . . . . . . . . . . . . AAAAAAACAA .
blockSeqs : . . . . . . G . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . AGA .
blockSeqs : . . . . . . G . . . . . . . . . . . . . A . . . . . .
blockSeqs : C . . .
blockSeqCons : AGG*** A** ********* A***** AAA* T**** T****** ***** ****************** ** TGC**** AC**** T* T****** ** ** ** ***** *** *** *********** ** A********** ** AGAAAAGCGA*********************
originalCons : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA-AG---GTGATT-AA-ANGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAG--CG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
finalCons : TACGTAATAGG---CCTACTT-AATAT-TGTTTTA--AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAAA-----GTGATTAAA-ANGTCTATTGATAT----TAAT------TGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGGTGC----CACTAACAC----TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTGT-TTTTA-CATT------TATCTATAA--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTTA----------AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-AAGAAAAGCGA---------------------AAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGCTCGAGATGTCATTGTATAGGCCACTTATTAACAGTCTCCGCGCGCACTTTAGAAAATCAGTCCGACGCCTCCTGTAATTTCCATAGTTATATAGATTTATTATTAATTATACGTTATTTTTATTCTAATAGGATACGTTAATACTTAATTATAT
Unaligned ( gi|13 ): TGCTCGAGATGTCATTACTATGCCCTTATTTAAAGTCCCGCCGACTTTTGGAAAATCAGTCGACGCCTGCTGTAATGTTCCATAGTTATATATGATTTATTATAATTATACGTATTATTTATATCTAATAGGGATACGTTAATACTTAATTATAT
Unaligned ( gi|17 ): CTTATTTTTTTTTATATAACTTTTGCCGCTTATCAAGTACGTTCCATACCAGGTGATTTTAGA
Unaligned ( gi|18 ): ATAAAATCACGGATGGGAGGCATGGGTCCCACTCCAAGGCGCTTGTTT
Alignments
lowQualScore : 111111 333333333 1 11111 1111111 11111 444444444444444444 1111111 111111 1111111 1 1 11111 11111 11111111111 111111 111111 22222222222 111111 6666666666666666666666666666666
lowQualScore : 999999 6 6 888 6 6 333333333 99 6 5 77 2 0 22222 7777777 44444 5 5 222222222222222222 77 5 77 1111111 222222 5 1 0 0 5 4 5 5 1 5 5 1 77 5 4444444 5 77 0 5 5 1 5 4 5 66 4 4 55 4 55 00000 1 3 3 3 777 777 00000 4 99999999999 3 55 4 0 000000 111111 44444444444 4 1 4 4 66 8 4 4 4 4 4 111111 4 55 4 4 4 5555555555555555555555555555555 1
lowQualScore : ...... . . ... . . ......... .. . . .. . . ..... ....... ..... . . .................. .. . .. ....... ...... . . . . . . . . . . . . .. . ....... . .. . . . . . . . .. . . .. . .. ..... . . . . ... ... ..... . ........... . .. . . ...... ...... ........... . . . . .. . . . . . . ...... . .. . . . ............................... .
lowQualScore : 888888 7 7 333 7 7 333333333 22 7 7 99 1 1 33333 9999999 33333 7 7 111111111111111111 99 7 99 6666666 999999 7 4 7 2 0 5 0 7 0 7 7 4 33 7 4444444 7 99 1 7 7 4 0 2 0 99 0 0 55 0 55 00000 0 6 6 6 000 000 00000 0 00000000000 8 55 0 8 777777 555555 77777777777 0 1 4 4 11 9 4 4 4 4 0 555555 0 55 0 4 4 9999999999999999999999999999999 9
consensus : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA--AG-TG-ATTAA--AATGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAG--CG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
Reference ( family-1856 ) : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA--AG-TG-ATTAA--AANGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTNAA-T-GTGATAGAACGTTTCTTTG-TTTTTA-CAT-----T-TATCTATAA--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAANA-TCAAG-C-AACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AGAAAAG--CG---------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|1 : TACGTAAG--ATAGCCTACTT-A-TAT-TGTTTTTACAAGACAG-CTTAGAAAAA-TTGCTCTAAATCGCTATAAGGTATACA--AG-TCTATGAATTAATGTCC-TTGATGGGCCTCAA--------ATCTCGTAGCTCTTATACATGAATTTATAGTATGTAGTCTATGTGTCTCGCACTCTACGATAC--GTCTGGTGCCACTAAGCACTCGCCTAGTCCGGAATTGCGCACTAGC--C---TGGAT-GTC-GGTGCAAC--AATTAGCTCCAAAAAACGTATATATGTCGCAAAAACAGCATGAAATAACATCATTTTAAAT-GTGATAGAACCTTTC----------------------TATCTATTA--AAGATATGTTTATTTAT-TTGAAAT-TTC-TGTA-TAGCTGGAATTGTATTTAAAAGGCCAATTTG-GGTCCCGTACTTTTG-GTATTCGATTGTGGT-GCTTTCTGCTTGTCAGTGGTGATTTAACAGATAATTGAACAAATTCAAG-C-AACTGCATCGTGTAGCACAAGTA-----TCTAATACTCCGCTGTCACAAAAACATCTTC--AATTCCGTAACCTGTTAAAG-----CTTT------TTTTTTTTTTTTAAA-AAAGT-TTGGAATG-TATATTACGCC-ACAGGAAGAAAAATT-GTGA-GACATATA-CCTTATCGA-TTTACTAAT-------TA-C--CATCGAAAAGTCCGTTGCCTGAGC-A----------AAAA----------------AAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGT
gi|10 : gagagggggactgcctctccccggctcctatagccaatgtttttacgcttatattatatagatctaatcaagtatTAATTGAAAACA-TCAAG-C-AATTGCA---TATAG---AAATG-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAT--G-TAAAG-----CTTT------TTTTA---------A-AAAGT-ATT-------------C------AAGAAGAAAATTT-GTGA-GACGCTTA-TCTTTTCAA-TTCTCTACTA------TA-C--CA-CGAAAAGTCCGTTG-TTGAGC-ACGCTTAGTCTGGAAACG--CG---------TAAAATAACACGGAAAGTCCGTCCCCATTCCACACCGTG
gi|11 : ttTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGGAAAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--CA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCAT
gi|14 : CGA-TTTCCTAGTA------CAACTACA-CACAAAGTCCGTTG-CTGAGC-A----------CGTTTAGTCTG-------------GAAACGCAGAAAATCCGTCCCCATTCGGCACCG
gi|15 : AAA-ATGAATGAA-A--TCCGTA-TTTTTTG--TCTGCTT-TGGTACCTTTGTG--AG-----GACGATTGTACAAATAATTGACAATA-TCAAG-C-
gi|16 : tTA-TTTTG-G--TCCGATT-TGGTAGTTTAGTG--TG-----GTTGATTTTAAAGATTATTGAAAAGA-TCAAG-C-A
gi|2 : TACGTAAT--A-AACCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGTT-TAAAT---------GTATAAA--AG-TG-ATTAA--AAAGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ACG-CATGTAGTC------------------CGATTA--GTCTGGTGCCAC-AAACACTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATTC-CCCCCAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACACCATTTCAA-T-GTGATAGA--------------------AT-----T-TATCTAT-A--AAGATATG-CTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATCGTATTTAAAA-GCAAATATG-G--TCCGTG-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTTAAAAGA-TCAAG-C-AACTGCA---AGTAG---AAATG-----T-TAAT-----------GTAAAAACATCTTTAAAATTCCGTAAC--G-TAAAGTCATATTTT------TTTTT---------A-----------------ATA--ACGCC-A-AAGAAGAACAATT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGCAA----------AAAAAAA--CAAAACAAAACAAAAAAAACACGGATAGTCCGTCCCCATTCCACACCGTG
gi|3 : agagtggggactgcccccggctcctgtacgcccgtttacgttatattaaatctaatagtacgTACGTAATTAA-GGCCTACTTTAATAT-TGTTTT-A-AAGACAGGCTTAGAAAAAATTGCT-TAAATC--------GTATAAC--AGCTG-ATTTA--AA--TCTATTGATA----CTAAATTGTTTTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGCC------------------CGATTA--GTCTGGCGCCTC-AAACACTAG--TAGTCCGG---TGC-CACTAATTACATATA-ATAGTCCGGTGCCACCAGATTT-CCCTAGAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTGAA-T-GTGATAGAACGTTTCTTTG-ATTTTA-CAT-----T-TATCTATAATTAAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCGAAGATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TTAAG-C-AACTGCA---TGTAA---AAATA-----T-TAAT-----------GCAAAAACATCTTTAAAATTCCGTAAC--G-TAAAG-----CTTT------TTTTT---------A-AAAGT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAACT-GTGA-GACATATA-CCTTATCGA-TTTGCTAATATACCGCTA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--AA---------AAAAAAAACACGGATAGTCCGTCCCCATTGCACACCGTG
gi|4 : TACGTAAT--A-GGCCTACTT-AATAT-TGTTTT-A-AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAA--AG-TG-ATTAA--AAAGTATATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTC------------------CAATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---TGC-CACTAAC-AC---TG-ATAGTCCGGTGCCACCAAATGT-CCCCAAAAAACATAATTATGTCGGAAAA-CAGCACGAG-TACCATCATTTAAA-T-GTGATAGAACGTATATTTG-TTTTTA-CAT-----T-TATCTAT-A--AAGATATG-TTATTTAT-TTGAAATATTCTTGTATTAGCTG-----------AAAA----AATATG-G--TCCGTA-TTTTG-A--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAATA-TCGAG-C-AACTGCA---TGTAG---AAATA-----T-TAAT-----------GCAAAAGCATCTTTAAAATTCCGTAAC--G-TAGAG-----C---------TTTTTAAAA-----A-AAAAT-ATTGAA-G-TATA--ACGCC-A-AAGAAGAAAAATT-GTGA-AACATATA-CCTTATCGA-TTTGCTAATA------AT-C--CA-CAAAAAGTCCGTTG-CTGAGC-G----------A---------G---------AAAAAAAACAAGGATAGT-----CCCATTCCACACCGTGt
gi|5 : cacgcccatgtttacgttatattatatctaatagtatgTACGTAAT--A-------CTC-AATATATGTTT----AAGACAGGCTTAGAAAAA-TTGCT-TAAAT---------GTATAAACGGG-TC-TTTAA--GATGTCTGTTGATA-------A------GTGTTTAGTGGCC-----ACGTCAACG-ATA-CATGTAGTC------------------TCATTATAGTCTGGTGTCAC-AAACACTTG--TAGTCCGA---TGC-CACTAAC-GC---TA-ATAGTCCGGTGCCACCAAAGTC-CTC-AAAAAACATAATTTTATCGCAAAA-CAGCATGAA-TAACGTAATTTCAA-T-GTGATAAAACGTTTCTTTA-TTTTTA-CATATACATGTATCTATAA--A-GATATG-TTATTTAC-TTGAAATGTTCTTGTATTAGCTGAAATTGCATTTAAA--GCAAATATG-G--TCCGTA-TTTTG-G--TCCGACT-TGGTAGTTTTGTG--TT-----GGTGATTTTGAAGATAATTGAAAATA-TCAAG-C-AACTGCA---TATTG---AGATG-----T-TGAT-----------GCAAAAATATC-TTGAAATT---TAA------AAAG-----GTTT------TTTCC---------ACAAAGT-AT
gi|6 : ttcgaatgaccttttatgtcacttaaaatttagaagcttgcagccccctttcaaaatcagtcctacgctactttaatattcaataatatgtacgttaattatattatacgttttattatatctaataggaG-ATTAT--AA-GTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CATGTAGTT------------------CGATTA--GTCTGGTGCCAC-AAACATTAG--TAGTCCGG---T-----------------------------GCCACCAAATTT-CCCCAAAAAACATGATTATGTCGCAAAA-CAGCATGAA-TAACATCATTTAAA-T-GTGATAGAACGTTTCTTTGTTTTTTA-CAT-----T-TATCTAT-A--AAGATATG-TTATTTAT-TTGAAATCTTCTTGTATTAGCTGGAATTGTATTTAAAA-GCAAATATG-G--TCCGTA-TTTTG-G--TCCGATT-TGGTAGTTTTGTG--TG-----GGTGATTTTAAAGATAATTGAAAAGA-TCAAG-CAAACTGCA---TGTAG---AAATG-----T-TAAT-----------GCAAAAACATCCTTAAAATTCCGTAAC--G-TAA--------TTT------TTTTT---------T-AAAGT-ATTGAA-G-TATA--ACGCCAA-AAGAAG-AAAATT-GTGA-GACATATA-CCTTATCGA--TTGCTAATA------TA-C--CA-CGAAAAGTCCGTTG-CTGAGC-A----------AAAAAAA--CA---------ACAAAAA--ACGGATAGTCCGTCCCCATTCCACACCATgc
gi|7 : GGTGCTACCAGAAGC-CCTCAAAAAACATAATTATATCGCAAAA-CAGCATGAA-TAACATCATTTCAA-TGGTG-TAGAACGTTTCTTTG-TTTTTATTAT-----T-TATCTATAA--AGAATATG-TTATTTATATTGAAAT-TTCTTGTATTAGCT-GAATTGTATTT--AA-GCAAATAAGTG--TCCGTA-TTTTG-G--T-CGATT-TGGTAGTTTTGTG--TG-----GGTGA-TTTGAAGATAA-TGAAAAG---TAAGAC-AACTGCT---TGTAG---AAATA-----T-TATG-----------GCAAAAACATCTTTAAAATT-CGTAAC--G-TAAAG-----CTTTTTTTTATTTTT---------A-AAAGTGATTGAA-G-TATA--ACGCCAA-AAGAAGAAAAATTGGTGACGACATATATCCTTATCGATTTTGCTAA-A------TA-C--CA-CG
gi|8 : TACGTAAT--A-------CTT-AATAT--ATTTT-A-ATGACAGGCTTAGAAAAA-TTGCT-TGAAT---------GTATAAA--AG-TG-ATTAA--CATGTCTATTGATA----TTAA------TTGTTTAGTGGCC-----AAATCAATG-ATA-CA------------------------------A--GTCTGATGCCAC-AAACACTAG--TAGTCCGG---------------AC---TG-ATAGTCCGATGCCACCAAAGTC-CTC--AAAAATATAATTATATCGTAAAA-CAGCATGA
gi|9 : aatgaccttttatgtcacttaatttagacccccccaactttcaaatctgttatgttcaatagtatatatacgttaatcatattatacgaaatattatatttaatagggGTA-TTTTG-G--TCCGATT-TGGTACTTTTGTG--TG-----GGTGATTTTGAAGTTAATTGAAAACA-TCAAG-C-AACTGCA---TATAG---AAATGTTAAAT-TAAT-----------GCAAAAACATC-TTAAAAGTCCGTAAC--G-TAAAG-----TTTT------GTTAA---------A-AAAAT-ATTCAA-GTTATA--ACGCC-A-AGAAAGAAAATTT-GTGA-GACACTTA-TCTTATCAA-TTCCCTACTA------TA-C--CA-CGAAAAGTCTGTTG-CTGAGC-ACGCTTAGTCTGGAAACG--CG---------TAAAATAACACGGGAAATCCGTCCCCATTCCACACCGTG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TGCTCGAGATGTCATTGTATAGGCCACTTATTAACAGTCTCCGCGCGCACTTTAGAAAATCAGTCCGACGCCTCCTGTAATTTCCATAGTTATATAGATTTATTATTAATTATACGTTATTTTTATTCTAATAGGATACGTTAATACTTAATTATAT
Unaligned ( gi|13 ): TGCTCGAGATGTCATTACTATGCCCTTATTTAAAGTCCCGCCGACTTTTGGAAAATCAGTCGACGCCTGCTGTAATGTTCCATAGTTATATATGATTTATTATAATTATACGTATTATTTATATCTAATAGGGATACGTTAATACTTAATTATAT
Unaligned ( gi|17 ): CTTATTTTTTTTTATATAACTTTTGCCGCTTATCAAGTACGTTCCATACCAGGTGATTTTAGA
Unaligned ( gi|18 ): ATAAAATCACGGATGGGAGGCATGGGTCCCACTCCAAGGCGCTTGTTT