lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4 55555 33 2 111 1 1 1 11 22 11 1 1 222222 2 1 1 1 1 11 2222 1 4 4 2 33 11 11 22 1 3333 1 444444444444 555555555555555555555 1111 11 333 11 1 55555555555555 1111 1 4 7777 1 6666666 11 4 666666666666 222 1 1 22222 222222 2222222 111 111 111 1 11 1 3333333333 111 222 222222222222222 55555555555555555555555555555555555555555555555555555555555555555555555 22222 22222222222 2222 444 33333333 111 1 3333 11 66666666666666666666666666666666 111 222 11 111 22
lowQualScore : 0 22222 6 44 0 000 3 3 3 7 8 6 6 88 00 88 3 7 3 8 7 222222 3 3 7 3 3 3 88 7 7 6 8888 3 6 0 0 6 44 6 88 88 7 6 00 6 3 4444 4 4 3 999999999999 000000000000000000000 9999 33 111 88 5 00000000000000 9999 3 0 2 4 0 6666 5 5555555 88 0 666666666666 999 3 3 0 55555 666666 4444444 222 888 444 0 0 0 0 000 5 8 6 8 11 0 8 6 0 0 6666666666 1 444 8 111 888888888888888 8 0 00000000000000000000000000000000000000000000000000000000000000000000000 44444 99 88 11111111111 5555 0 0 6 333 2 77777777 777 0 5555 33 00000000000000000000000000000000 3 666 6 555 3 33 444 8 55
lowQualScore : . ..... . .. . ... . . . . . . . .. .. .. . . . . . ...... . . . . . . .. . . . .... . . . . . .. . .. .. . . .. . . .... . . . ............ ..................... .... .. ... .. . .............. .... . . . . . .... . ....... .. . ............ ... . . . ..... ...... ....... ... ... ... . . . . ... . . . . .. . . . . . .......... . ... . ... ............... . . ....................................................................... ..... .. .. ........... .... . . . ... . ........ ... . .... .. ................................ . ... . ... . .. ... . ..
lowQualScore : 0 00000 0 00 0 000 3 3 3 3 3 7 7 33 00 33 3 3 3 3 3 777777 7 3 3 3 3 3 33 3 3 7 3333 3 7 0 0 7 00 7 33 33 3 7 00 7 3 3333 0 0 3 777777777777 888888888888888888888 0000 88 000 88 0 88888888888888 5555 2 0 5 0 0 0000 5 0000000 33 0 000000000000 000 3 2 0 88888 000000 4444444 888 000 000 8 8 8 8 888 0 0 0 0 00 8 0 0 8 8 0000000000 0 000 0 444 222222222222222 0 6 22222222222222222222222222222222222222222222222222222222222222222222222 00000 22 33 00000000000 0000 8 8 5 222 2 55555555 555 0 0000 22 88888888888888888888888888888888 2 888 0 000 8 00 000 0 00
consensus : AATG-TCTTTGATCACAT-ATTAAACCAATCTATTATATGGGTTCTGAAAATGTGCGCGATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATAATGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAATTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AATCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCGTAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATACAGTAAGTA--TTTGCACCATAACCATAAAACGT--CATGGTATTC-CTCC-AGTTGTAAA--T-TGTAATATTTCTAATGCCAATGA-AA--A--T--AT--GTCTCTGGGAAAGAGTAACTTCAGCTCTA--ATC-ACACAAATTTTG--TCATT-CAAATATTTATACAGATTGGAAATGT-ACA-AC---TACAACA---TGAAAGATGGAAAGCTT-GTCACATNCTTANTTTTAAAATCAAAC-TGCTTGTTGGAAAGAATATCTTAATTCAGTTAATAACTACAAAATAAAATATAGAAGATCAATT--TGTAGATTCAG-AC---GANA--TCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ACT--ACAG--TATTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGA--TGAAATTCACTTCCTTA-TTCAATGTGACAA--ATTTAG-TCAACA---AAGAG-AGAAACTTATTTA------GA-C-----TTGT-AAATTCA----AGT--ATA--TA---AATTAANA-TGA-TT----------AA-CT-G-ATAAAGAAAA-----TTATTTTTTTT-N--ATTT--TA-A----AT-----TGTGT---AAGATATTGAAATCATGAA-TGCCTTGGG-TAGA-C-TT---CTTCA-CGATAAGC--TTTA-CCTA-AC--CTATTTCA--TT------TT--A----TCTTAG-TCGAATTTT--GAGCAATG-ATGACTCCT---TCC-CTCTTGTGCCCAATGT
Reference ( gi|3 ) : AATGCTCTTTGATC-CATTATTAAACCAATTTTATATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTCAAATCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAATTTTCCAC-TTTAAAGGATG-CTTTC-ATACAGTAAGTA--TTTGCACCATAACCATAAAACGT--CATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--A--T--ATTAGTCTCTGGGAAAGAGTAACTTCAGCTCTAC-ATC-ACACAAATTTTG--TCA-T-CAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTT-GTCACATCCTTATTTTTAAAATCAAACTTGCTTGT---GAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAG-TTCAG------GACA--TCATCACACAGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACCCCCAGGAATG---AAAGAATTTGCAAAAATTGCACACAAAATGTAGT-G-A-AGA--TGAAATTCACTTCCTTA-T-CAATGTGACAA--ATTTAG-TCAACA---AAGAG-AGAAACTTATTTA------GA-C-----TTGT-AAATTCA----AGT--ATA--TA---AATTAAAA-TGA-TT----------AA-CT-G-ATAAAGAAAAG-TTGTTGTTTTTTTT-T--ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-T-CTTTGGG-T--A-C-TT---CTTCA-TGATAA----TTTA-CCTA-AC--CTATTTCA--TTC-----TT--A----TCTTGG-TCGAATTT---GAACAATG-ATGACTCCT---TCC-CTCTTGTGCCCAATGT
gi|1 : AATG-TCTTTGATCACAT-ATTAAACCAATCTATTATATGG-TTCTGAAA---TACGGGATACT-GAATATTAAGAACACTGAA-CTCAATCAACT-GATAATATTCAAATAGAAGATGAGTACA-AACCAGTTAA--ATGTGGTAATTAT-T-CAT-CAAATTTTTGCAAA-------------------------TCTTTCAACCCATGCTTCTCCTCTT-GAGTTGGGTAAAAC-ACCGACTACATTATGATACAGTCA--AGAGCA-------------TCGTTGATTAGAAGAATAGTCTTAT-TGGA-TTTCCACTTTTAAAGGATG-CTTTC--TA-AGTAGGAAGCTCTGCACCATAACCACACAACTT--C-T-GTATTCAGTCCAAATTGGCAAC-TGTGTAATATTTCTAATGCCAAGGG-AA--AGCTCGAT--GTCTCTGGGAAAGA-------------------T-ACACAA----TGATTCATT-CAAATATTCAT-CA-ATTGGAAA--T-ACA-------ATAACT---TGAAAG-TGGAAAATTT-
gi|2 : ggggatgtataccctatcttttaagattcctacaattcggggcccagctgaccccaattaactacagaggggaattatcataactcgtatctgagtaaactatttttttaaaatgccattctgaataataatagattagataaattttagaacaaatacaatgtcatccttgctagcacaaattggttttccaaacatgcttgacaactgcagtgatcaactgtttcattcttaagtctagttaagaaatatgtgtagcacaaaagcggagtagactattgtttgatgtcattgttccaaaaggcttttgatagtgtaatacattgtagagctagaattgaaatactctgctaaatatagttctagcttatgaaacaactaaatatgtatgttgaaaagtggaaaccctgcagtttaaattaaatgctcttcacttcttattccgtattaatttatggtgtacgtcaaggttaaatctcagttcctggtcttttcaaaaatttctccaatgattacatgtaccaaaattcagagaaagctttacgatgagttaaaattacagtatggaaaaaattgcggcctaatgatgcagatgtatattttacatctccagaaggctcccaaaagaatttaactgacagaaaatactgtaagattgggaattaagttaacttgcacaaaacaaaataatttacatttaattaaggctgaacagcccataaaacataaatttctttggtaaaaaacccgaaatgatgtggatcaaactatatacttgggatattatgttttatgcatctgaaacattgttttatggcaaaatcctctcaaacatagttcaaattaagacgatatttttttagttttaaaccaggaattaaagaacatgtatTATATGGGTTCTGAAAATGTGCACACTACTTAAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAA-ATTGTTACACAA--AGCTAACGGTGTG--AGTTACCTACATTCAAAATTTTGCAAATATATATTAGGAATAAA-AAAACAATCTGTC-AATCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAAAAGCATATTCAAATACTG-CATA-GTTAGAA----AATC-TATCTGAA-TTTCCACGTTTAAAGGATGCCTTTCTATACAGTAAGTA--TTTGCACCATAACCATAAAACGTCGCATGGTATT--CTCC-AGTTGTAAAACTCTGTAATATTTTTAATGCTAATGATAACCA--T--ATTAGTCTCTGGGAAAGAGTAACTTCAGCTCTAA-ATCAACACAAATTTTG--TCATT-CAAATATTTATACAGATTGGAAATGTGACAAAC---TACAACA---CGAAAGATGGAAAGCTTGGTCACATCCTTATTTTTAAAATCAAAC-TGCTTGTTGGAAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAGAAC---GACA--TCATCACACA-ACTTCTTAGATTGG-A-GCTGG---CTGAGATT-G-T--ACAC--TACCCCCAGGAATG---AAAGAATTTGC-AAAATTGCACACAAAATGTAGT-G-A-AGATGTGAAATTCACTTCCTTA-T-CAATGTGACAA--ATTTAGTTCAACA---AAGAGAAGAAAC-TATTTA------GA-C-----TTGT-AAATTCA----AGT--ATA---A---AATT-TAA-TGA-TT----------AACCT-GAATAAAGAAAAGTTTGTTGTTTTTTTTAT--ATTT--TA-A----A------TGTG----AAGATATTGAAATCATGAA-TGCTTTGGGAT--A-CTTT---CTTCATTGATAAAT--TTTA-CCTA-AC--C-ATTTCA--TT------TT--A----TCTT-G-TCGAA-TT---GAACAATG-ATACTTCCT---TCC-CTCTTGTGCCCAATGTa
gi|4 : ATATGGGCAACACT-AAATACTAAGAGCACT-AAACTAAATCAAGTAGATAATGTTCAAACAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAATAAAA-AATCTGTC-AATCATGATTCT-CTCTCAGAACTGGGT-AGACATCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCATAGGTTAGAC----AATC-TAGCTAAA-TGTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTA--TTTGCACCATAACCATAAAACGT--CATGGTATTC-CT-C-AGTTGTAAA-----------------------ATGA-AA--A--T--AT--GTCTCTTGGAAAGAGTAACTTCAGCTCTACAATC-ACAAAAATTTTG--TCATT-CAAATATTTA-ACA-----------------------ACAACA---TGAAAGATGGAAAACTT-GTCACATACTTAATTTTAAAATCAaatcgactccttcccttcttgtc
gi|13 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnntctgaatttccacttttaaaggatgcctttctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCTCTGGGAAAGAG------CAGTTATA--------ACAA-TGATA--TCA-TTCAAATATTTA-ACAGATTGGAAATGT-ACATACGTATATAACAACTTGAAAGATAGGAAGTTT-GT
gi|5 : ttTTCAGTTA-TAACTACAAAATAAAATATAGAAGATCAATTGGTATAGATTCAG------AGTA--TCATCACA--GACTT-TTA-ATTGA-A-ACTGG---T--AGAT--ACT--GCAA--TATTCACAGGAATG---AAAAAA----AAAAAATTGCA-----AATGTAGT-GCA-AGA--TGAAATTCACTTCTTTA-TTCAATGAGGCAA--ATTTAG-TCAACA---AAGAG-AGAAA-TTATTTA------GA-C-----TTGT-GCATTT----------------------TCAAAAGTGA---------------------ACAAAGAAAA-------ACTTTTTTT-G--ATTT--TA-A----AT-----TGTG----AAGATGTCGAAATCATGAACT-CCTTGGG-TAGA-T-TT---CTTCA-CGATAAGCTGTTT----TA-A----TTCTGCA--TT------TTAAA----TGTTAGCTTGAATTCTAGGAAC-----ATGACCCCT---TCC-TTGTTGT--CCAAT
gi|7 : atacctatctttacacatgcGATCAGTT--TGTAGATTCAGCATTGAGAAAACTCATTACA-AGACTT-T-A-ATTAACGTACCGGCGAT--AGTTTCACTTAACAGAGTGCGCGCAAGGATGTGGAAAGCATTTCAAAAAATTGCGAAGAAAATGTAGA-G-ACAGA--TAAAA-TCACTT-CTTG-T-CG--GTGAC------------CAAGA---GCGTG-AGAGAGTGATTTA------GAGCGTGAATTGT-AAATTCAGAAGAGT--A-A--TAG--AGCTAATG-TAA-TTCGAGTGTGGAGA-CTAG-ATAAAAAGAA-------ATTTTTTTT-A--ACTTGGTA-ATGTGATAAGAGTGTGT---GAGATATTGAGAccaattttgtcctaatcttaatacatgtacttgtctctttctctcatttaattcctgttagctctgtctttttgttctctttcctggtgtatgctgtgcactttaaatgccctgtttaggctctgaattagagaataacatctattct
gi|16 : tagaagcaatgTA-ATGGC-G--CTTG---T--AGAT--GTT--ACAG--TATTCCCTGAAATG---AAAGAATTTGCAAAAA
gi|6 : T-ATT--ACAA--T-TTCCCAGGAATG---AA-GAATTTGCAAAAAATGCACAGAAAAT--AGT-GGA-AGA--TGAAATT-ACTTCCTTA-TTCAATATAACAG-------------CA---AAGAG-AAAA--TTATTTA------GG-C-----TTGT-ACATTCA----AATGAATATTTACTTGATTTACA-TG--TA----------AA-CT-G-ATAAAGAA-------TTTTTTGTGTG-TGGATTT--T--A----AT-----TGTGTAATAAGATA--GAAATTAAGAA---CCTTGGG-TAGA-T-TT---CTTCA-CGATAA----TTTACCCTA-GT--CAATTTAA--TTCACTTTTT--AAATGTC-TAT-TTGAATTT---TAGCAAT--ATGACCCCT---TCCTTTCTTAT--CCAATG
gi|11 : gAAAT-GTACAGGAAATTTATTTG-A-AGA--TGAGATTCACTTCCTTATT-CAATTTAACAAGCATATAA-TCATTGTTTAATGG-AGAAAC-CATTTAAAACAGAA-C-----ATGTGAAAGTGA----AGT--TTA--C-------------TGATTT----------AT-CT-G-ATAAAGAAAA--------CTTTTTTG-A--ATTT--TA-A----AT-----Tcatttccctaattttcagtgatgtgtcatatatgtactcatttatcgtaccattgtagatgtcttttcttctttctttttt
gi|8 : t--ATTT--TGGA----AT-----TGTG----A-GATATTGAAAT-ATGAAATGCCTTGGG-T--AGC-TTTGTCTTCA-TGATAA----TTTA-CCTAGACCGCT-TTTCAATTTA-----TT--A----TCTTGG-TCGAATTTTG-GAGCGATG-TTGACTCCTTTGTCC-CTCTTGTGC
gi|10 : tgCGAAATT---GAGCAATGTATGACTCCT---TCC-CTCTTGT--CCAATaatagcaggattgtgtctttttttttcgtcaatgtttgtcatatgtctcgctttatgtttttatagcgctatcatctatcttttgatttcttttctgtaatgctatgttatgctcctttttgccctttttgggctctgaattagtcaataaagttattctag
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AAGAAGTCTCATCTGCTATTAGTTCATTGAAAACTGGAAAAGCAAAGGGTCTGGATCTAATATCTATTTTCATTTTTTGTCTCTCAAACACATACTATCCAGAAGCATGGGCAAACGGGTATATATCCCCCTTTTTTAAAATCAGGGAACCCAGTTGACCCCAATAACTAAAGAGGAATTGCCATAACTAGTAAT
Unaligned ( gi|12 ): TCTTGTGCAATACAATTTTGTCTTTTTTTCAAAGTTTGTCATTTAGTTCCACTTTATGTTAAGCTTTCTTTTCTTAATGTATGTTTATGCTCCTTTTTGCCCTGCTTGGGCTCTGAATTAGCAATAAAATCTATTT
Unaligned ( gi|14 ): AAATATGAAATTGATACAATATGATGCCCAGTGATAATCCTACTATTGTGCAATACAATTTTGTCCTTTTCTGAATGTGTGTCATTATGTCT
Unaligned ( gi|15 ): TATTTAAATCTGTACCTTCGAAAGTGAGCAAATTTACTGATTTATCTGATAAAGAAAAAAAAATGTTGGATTTCAAATTGC
Unaligned ( gi|17 ): GCTCTGAATTAGCAATAAATCTATTCTATTCATAG
Alignments
lowQualScore : 2 1 2 1 1 1 11 11 11 1 1 1 1 1 1 1 1 1 1 11 2222 1 1 11 11 1 1 555555 1 222222222222 22222222 11 11 1 444444444444444 111 2 222 66666666 11 555555 11 11 1 1111 111111 1111111 111 111 1 11111111111 111 11 111111111111111 66666666666666666666666666666666666666666666666666 55555555 11111 11111111111 3333 11 111 33 222222222222222 11 22222222222 1 11 11 111 11
lowQualScore : 0 5 0 88 6 6 3 0 2 0 0 0 3 4 2 2 33 22 33 0 3 0 4 3 0 0 0 0 0 3 0 0 0 33 3 3 2 2 1111 0 8 5 0 0 3 33 3 2 22 2 0 0 555555 4 4 0 777777777777 888888 88888888 0 11 11 0 11 0 000000000000000 444 0 8 1 1 0 000 0 7 0 66666666 33 3 333333 1 33 99 0 0 8 6666 999999 6666666 111 1 111 2 2 3 6 6 99 1 7 88888888888 111 6 44 666666666666666 22 22222222222222222222222222222222222222222222222222 5 5 0 00000000 66666 66 77 55 55555555555 5555 3 8 33 2222 8 444 8 11 0 333333333333333 8 11 00000000000 0 999 0 33 33 111 6 77
lowQualScore : . . . .. . . . . . . . . . . . . .. .. .. . . . . . . . . . . . . . . .. . . . . .... . . . . . . .. . . .. . . . ...... . . . ............ ...... ........ . .. .. . .. . ............... ... . . . . . ... . . . ........ .. . ...... . .. .. . . . .... ...... ....... ... . ... . . . . . .. . . ........... ... . .. ............... .. .................................................. . . . ........ ..... .. .. .. ........... .... . . .. .... . ... . .. . ............... . .. ........... . ... . .. .. ... . ..
lowQualScore : 0 5 0 00 7 7 2 2 0 0 0 0 2 0 5 5 88 55 88 0 2 0 0 2 0 0 0 0 0 2 0 0 0 88 2 2 0 5 2222 0 0 6 0 8 2 88 2 5 55 5 0 0 000000 2 2 0 222222222222 000000 66666666 8 66 00 8 44 0 222222222222222 000 8 0 0 0 0 555 7 3 7 33333333 88 2 555555 0 88 22 0 8 0 2222 000000 5555555 333 7 777 5 5 3 7 7 22 0 3 33333333333 777 7 00 444444444444444 77 33333333333333333333333333333333333333333333333333 7 7 1 22222222 77777 77 99 99 44444444444 3333 2 0 88 4444 0 000 0 44 8 222222222222222 0 00 00000000000 8 888 6 33 33 777 7 55
consensus : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGGGTTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGT--CATGGTATTC-CTCC-AGTT-GTAAAAC-C-TGTAATATTTTTAATGCTAATGA-AA--A--T--ATTAGTCTCTGGGAAAGAGTAACTTCAGCTCTA-A-ATC-ACACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-ACAA-AC---TACAACA---CGAAAGATGGAAAGCTT-GTCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTAT-------AATATAGAAGATCAATT--TGTAGATTCAG-AC---GACA--TCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGA--TGAAATTCACTTCCTTATTCAATGTGACAA--ATTTAG-TCAACA---AAGAG-AGAAACTTATTTA------GA-C-----TTGTAAATTC--A----AGT--ATA--TA---AATTNACA-TGA-TT----------AA-CT-G-ATAAAGAAAA-------ATTTTTT-----TT-GATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATG-AATGCCTTGGGTAGAC-T---TCTTCA-CGATAA--TTTACC-----TA-AC--CTATTTC-A--TT--TT--A----TCTTGG-TCGAATTTT-GAGCAATG-ATGACTCCT---TCC-CTCTTGTGCCCAATGT
Reference ( family-1839 ) : AATG-TCTTTGATCACAT-ATTAAACCAATCTATTATATGGGTTCTGAAAATGTGCGCGATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATAATGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAATTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCGTAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATACAGTAAGTATTTGCACCATAACCATAAAACGT--CATGGTATTC-CTCC-AGTT-GTAAA---T-TGTAATATTTCTAATGCCAATGA-AA--A--T--AT--GTCTCTGGGAAAGAGTAACTTCAGCTCT--A-ATC-ACACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-AC-A-AC---TACAACA---TGAAAGATGGAAAGCTT-GTCACATNCTTANTTTTAAAATCAAAC-TGCTTGTTGGAAAGAATATCTTAATTCAGTTAATAACTACAAAATAAAATATAGAAGATCAATT--TGTAGATTCAG-AC---GANA--TCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ACT--ACAG--TATTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGA--TGAAATTCACTTCCTTATTCAATGTGACAA--ATTTAG-TCAACA---AAGAG-AGAAACTTATTTA------GA-C-----TTGTAAATTC--A----AGT--ATA--TA---AATTAANA-TGA-TT----------AA-CT-G-ATAAAGAAAA-----TTATTTTTT-----TT-NATTT--TA-A----AT-----TGTG---TAAGATATTGAAATCATG-AATGCCTTGGGTAGAC-T---TCTTCA-CGATAAGCTTTACC-----TA-AC--CTATTTC-A--TT--TT--A----TCTTAG-TCGAATTTT-GAGCAATG-ATGACTCCT---TCC-CTCTTGTGCCCAATGT
gi|1 : AATG-TCTTTGATCACAT-ATTAAACCAATCTATTATAT-GGTTCTGAAA---TACGGGATACT-GAATATTAAGAACACTGAA-CTCAATCAACT-GATAATATTCAAATAGAAGATGAGTACA-AACCAGTTAA--ATGTGGTAATTAT-T-CAT-CAAATTTTTGC------------------------A-AATCTTTC-AACCCATGCTTCTCCTCTT-GAGTTGGGTAAAAC-ACCGACTACATTATGATACAGTCA--AGAGCA-------------TCGTTGATTAGAAGAATAGTCTTAT-TGGA-TTTCCACTTTTAAAGGATG-CTTTCTAAGTAGGAAGC-TCTGCACCATAACCACACAACTT--C-T-GTATTCAGTCCAAATTGGCAAC---TGTGTAATATTTCTAATGCCAAGGG-AA--AGCTCGAT--GTCTCTGGGAAAGA--------------------T-ACACAA----TGATTCATTCAAATATTCAT-CA-ATTGGAAA--T-AC-A-------ATAACT---TGAAAG-TGGAAAATTT-
gi|10 : ggggatgtataccctatcttttaagattcctacaattcggggcccagctgaccccaattaactacagaggggaattatcataactcgtatctgagtaaactatttttttaaaatgccattctgaataataatagattagataaattttagaacaaatacaatgtcatccttgctagcacaaattggttttccaaacatgcttgacaactgcagtgatcaactgtttcattcttaagtctagttaagaaatatgtgtagcacaaaagcggagtagactattgtttgatgtcattgttccaaaaggcttttgatagtgtaatacattgtagagctagaattgaaatactctgctaaatatagttctagcttatgaaacaactaaatatgtatgttgaaaagtggaaaccctgcagtttaaattaaatgctcttcacttcttattccgtattaatttatggtgtacgtcaaggttaaatctcagttcctggtcttttcaaaaatttctccaatgattacatgtaccaaaattcagagaaagctttacgatgagttaaaattacagtatggaaaaaattgcggcctaatgatgcagatgtatattttacatctccagaaggctcccaaaagaatttaactgacagaaaatactgtaagattgggaattaagttaacttgcacaaaacaaaataatttacatttaattaaggctgaacagcccataaaacataaatttctttggtaaaaaacccgaaatgatgtggatcaaactatatacttgggatattatgttttatgcatctgaaacattgttttatggcaaaatcctctcaaacatagttcaaattaagacgatatttttttagttttaaaccaggaattaaagaacatgtatTT-GAGCAATGTATGACTCCT---TCC-CTCTTGT--CCAATa
gi|11 : cgaaaAAAT-GTACAGGAAATTTATTTG-A-AGA--TGAGATTCACTTCCTTATTCAATTTAACAAGCATATAA-TCATTGTTTAATGG-AGAAAC-CATTTAAAACAGAA-C-----ATGTGA------A----AGT--G-----A---AGTTTAC--TGATTT----------AT-CT-G-ATAAAGAAA--------ACTTTTT-----TG-AATTT--TA-A----AT-----Tacagttttgtctttttttcaaagtttgtcattatgtctcactttatgttagtttcttttcttaatgtatgttatgctccttttgccctgcttgggctctgaattagcaataaaatctatttta
gi|13 : tT--GTCTCTGGGAAAGAG------CAGTTAT--A-AC-------AATGATA--TCATTCAAATATTTA-ACAGATTGGAAATGT-AC-ATACGTATATAACAACTTGAAAGATAGGAAGTTT-GT
gi|15 : tTATTTA------AA-T-----CTGTACCTTCGAA----AGT--GAG--CA---AATTTAC--TGA-TT----------TATCT-G-ATAAAGAAAA-----
gi|16 : TA-ATGGC-G--CTTG---T--AGAT--GTT--ACAG--TATTCCCTGAAATG---AAAGAATTTGCAAAAAaaaaatgttggatttcaaattgc
gi|2 : TATATGGGTTCTGAAAATGTGCACACTACTTAAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAA-ATTGTTACACAA--AGCTAACGGTGTG--AGTTACCTACATTCAAAATTTTGCAAATATATATTAGGAATAAA-AAAACAATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAAAAGCATATTCAAATACTG-CATA-GTTAGAA----AATC-TATCTGAA-TTTCCACGTTTAAAGGATGCCTTTCTATACAGTAAGTATTTGCACCATAACCATAAAACGTCGCATGGTATT--CTCC-AGTT-GTAAAACTC-TGTAATATTTTTAATGCTAATGATAACCA--T--ATTAGTCTCTGGGAAAGAGTAACTTCAGCTCTA-A-ATCAACACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGTGACAA-AC---TACAACA---CGAAAGATGGAAAGCTTGGTCACATCCTTATTTTTAAAATCAAAC-TGCTTGTTGGAAAGAATATCTTAATTCAATTAATAATTAT-------AATATAGAAGATCAATT--TGTAGATTCAGAAC---GACA--TCATCACA-CAACTTCTTAGATTGG-A-GCTGG---CTGAGATT-G-T--ACAC--TACCCCCAGGAATG---AAAGAATTTGC-AAAATTGCACACAAAATGTAGT-G-A-AGATGTGAAATTCACTTCCTTA-TCAATGTGACAA--ATTTAGTTCAACA---AAGAGAAGAAAC-TATTTA------GA-C-----TTGTAAATTC--A----AGT--ATA---A---AATTTA-A-TGA-TT----------AACCT-GAATAAAGAAAAGTTTGTTGTTTTTT-----TTATATTT--TA-A----A------TGTG----AAGATATTGAAATCATG-AATGCTTTGGG-ATACTT---TCTTCATTGATAAATTTTACC-----TA-AC--C-ATTTC-A--TT--TT--A----TCTT-G-TCGAA--TT-GAACAATG-ATACTTCCT---TCC-CTCTTGTGCCCAATGT
gi|3 : AATGCTCTTTGATC-CATTATTAAACCAATTTTATATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTCAAA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAATTTTCCAC-TTTAAAGGATG-CTTTC-ATACAGTAAGTATTTGCACCATAACCATAAAACGT--CATGGTATTC-CTCC-AGTT-GTAAAAT-C-TGTAATATTTTTAATGCTAATGA-AA--A--T--ATTAGTCTCTGGGAAAGAGTAACTTCAGCTCT--ACATC-ACACAAATTTTG--TCA-TCAAATATTTATACAGATTGGAAATGT-ACAA-AC---TACAACA---CGAAAGATGGAAAGCTT-GTCACATCCTTATTTTTAAAATCAAACTTGCTTGT---GAAGAATATCTTAATTCAATTAATAATTAT-------AATATAGAAGATCAATT--TGTAG-TTCAG------GACA--TCATCACACAGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACCCCCAGGAATG---AAAGAATTTGCAAAAATTGCACACAAAATGTAGT-G-A-AGA--TGAAATTCACTTCCTTA-TCAATGTGACAA--ATTTAG-TCAACA---AAGAG-AGAAACTTATTTA------GA-C-----TTGTAAATTC--A----AGT--ATA--TA---AATTAAAA-TGA-TT----------AA-CT-G-ATAAAGAAAAGTTG-TTGTTTTTT-----TT-TATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATG-AAT-CTTTGGGT--AC-T---TCTTCA-TGATAA--TTTACC-----TA-AC--CTATTTC-A--TTC-TT--A----TCTTGG-TCGAA-TTT-GAACAATG-ATGACTCCT---TCC-CTCTTGTGCCCAATGTaatcgactccttcccttcttgtc
gi|4 : TCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTA
gi|4 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnnATATGGGCAACACT-AAATACTAAGAGCACT-AAACTAAATCAAGTAGATAATGTTCAAACAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAATAAAA-AATCTGTC-AA-TCATGATTCT-CTCTCAGAACTGGGT-AGACATCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCATAGGTTAGAC----AATC-TAGCTAAA-TGTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGT--CATGGTATTC-CT-C-AGTT-GTAA------------------------AATGA-AA--A--T--AT--GTCTCTTGGAAAGAGTAACTTCAGCTCTACA-ATC-ACAAAAATTTTG--TCATTCAAATATTTA-ACA------------------------ACAACA---TGAAAGATGGAAAACTT-GTCACATACTTAATTTTAAAATCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatgggcaacactaaatactaagagcactaaactaaatcaagtagataatgttcaaacagaagattgttacacaaagctaaggtgtgagttactacatcaaaaatttgcaaatatatattaggaataaataaaaaatctgtcaatcatgattctctctcagaactgggtagacatccactgcattatgatatagtccaaagcatattcaaatactgtcataggttagacaatctagctaaatgtccacttttaaaggatgcctttctatgcagtaagtatttgcaccataaccataaaacgtcatggtattcctcagttgtaaaatgaaaatatgtctcttggaaagagtaacttcagctctacaatcacaaaaattttgtcattcaaatatttaacaacaacatgaaagatggaaaacttgtcacatacttaattttaaaatca
gi|5 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnntctgaatttccacttttaaaggatgcctttctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCAGTTA-TAACTACAAAATAAAATATAGAAGATCAATTGGTATAGATTCAG-A-----GTA--TCATCACA--GACTT-TTA-ATTGA-A-ACTGG---T--AGAT--ACT--GCAA--TATTCACAGGAATG---AAAAAA----AAAAAATTGCA-----AATGTAGT-GCA-AGA--TGAAATTCACTTCTTTATTCAATGAGGCAA--ATTTAG-TCAACA---AAGAG-AGAAA-TTATTTA------GA-C-----TTGTGCATTT------------------------TCAAAAGTGA---------------------ACAAAGAAAA-------ACTTTTT-----TT-GATTT--TA-A----AT-----TGTG----AAGATGTCGAAATCATG-AACTCCTTGGGTAGAT-T---TCTTCA-CGATAAGCTGT-TT-----TA-A----TTCTGC-A--TT--TTAAA----TGTTAGCTTGAATTCT--AGGAAC--ATGACCCCT---TCC-TTGTTGT--CCAAT
gi|6 : atacctatctttacacatgcT-ATT--ACAA--T-TTCCCAGGAATG---AA-GAATTTGCAAAAAATGCACAGAAAA--TAGTGG-A-AGA--TGAAATT-ACTTCCTTATTCAATATAA-------------CAGCA---AAGAG-AAAA--TTATTTA------GG-C-----TTGTACATTC--A----AATGAATATTTACTTGATTTACA-TG--TA----------AA-CT-G-ATAAAGA----------ATTTTTTGTGTGTG-GATTT--T--A----AT-----TGTGTAATAAGATA--GAAATTAAG-AA--CCTTGGGTAGAT-T---TCTTCA-CGATAA--TTTACCCTAGTCA-AT--TTAATTC-ACTTT--TT--AAATGTC-TAT-TTGAATTTT--AGCAAT--ATGACCCCT---TCCTTTCTTAT--CCAATGccaattttgtcctaatcttaatacatgtacttgtctctttctctcatttaattcctgttagctctgtctttttgttctctttcctggtgtatgctgtgcactttaaatgccctgtttaggctctgaattagagaataacatctattct
gi|7 : gGATCAGTT--TGTAGATTCAGCATTGAGAAAACTCATTACA-AGACTT-T-A-ATTAACGTACCGGCGAT--AGTTTCACTTAACAGAGTGCGCGCAAGGATGTGGAAAGCATTTCAAAAAATTGCGAAGAAAATGTAGA-G-ACAGA--TAAAAT-CACTTC-TTGT-CG--GTGAC------------CAAGA---GCGTG-AGAGAGTGATTTA------GAGCGTGAATTGTAAATTC--AGAAGAGT--A-A--TAG--AGCTAATG-TAA-TTCGAGTGTGGAGA-CTAG-ATAAAAAGAA-------ATTTTTT-----TT-AACTTGGTA-ATGTGATAAGAGTGTG---TGAGATATTGAGAcatttccctaattttcagtgatgtgtcatatatgtactcatttatcgtaccattgtagatgtcttttcttctttctttttt
gi|8 : tagaagcaatgT-GATTT--TGGA----AT-----TGTG-----AGATATTGAAAT-ATGAAATGCCTTGGGTAG-C-TTTGTCTTCA-TGATAA--TTTACC-----TAGACCGCT-TTTCAA--TTTATT--A----TCTTGG-TCGAATTTTGGAGCGATG-TTGACTCCTTTGTCC-CTCTTGTGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAGAAGTCTCATCTGCTATTAGTTCATTGAAAACTGGAAAAGCAAAGGGTCTGGATCTAATATCTATTTTCATTTTTTGTCTCTCAAACACATACTATCCAGAAGCATGGGCAAACGGGTATATATCCCCCTTTTTTAAAATCAGGGAACCCAGTTGACCCCAATAACTAAAGAGGAATTGCCATAACTAGTAAT
Unaligned ( gi|12 ): TCTTGTGCAATACAATTTTGTCTTTTTTTCAAAGTTTGTCATTTAGTTCCACTTTATGTTAAGCTTTCTTTTCTTAATGTATGTTTATGCTCCTTTTTGCCCTGCTTGGGCTCTGAATTAGCAATAAAATCTATTT
Unaligned ( gi|14 ): AAATATGAAATTGATACAATATGATGCCCAGTGATAATCCTACTATTGTGCAATACAATTTTGTCCTTTTCTGAATGTGTGTCATTATGTCT
Unaligned ( gi|17 ): GCTCTGAATTAGCAATAAATCTATTCTATTCATAG
Alignments
lowQualScore : 1 1 1 2 1 1 1 11 11 11 1 1 1 1 1 1 1 1 1 1 11 2222 1 1 111 11 1 22222 1 11 1111 1111111 1 11 11 1 2222222 111 1 1 222 4444444 11 66666666666 11 1 1111 111111 1111111 111 1 111111111111 111 111111 11111 11111111 444444444444 222222222222222222 44444444444444444 11111 1 1111 11111 2222 222 111 2222 222222222222222 11 22222222222 11 66666666666666666666666 11 222 111 22
lowQualScore : 5 5 5 22 3 3 0 0 0 0 3 1 2 2 33 22 33 0 3 0 1 3 0 0 0 0 0 3 0 0 0 33 3 3 6 1111 0 8 5 0 0 3 777 2 88 2 0 33333 0 0 0 33 8888 888888 6666666 0 11 11 0 11 0 9999 6666666 444 0 0 5 000 7 3333333 33 3 11111111111 3 99 0 0 8 6666 999999 4444444 99 1 111 2 2 3 6 6 99 1 7 777777777777 111 6 999 666666 5 44444 22 55555555 333333333333 1 555555555555555555 5 999 5 00000000000000000 44444 0 66 5 0000 22222 0000 3 111 2222 444 8 8 8888 0 333333333333333 8 11 00000000000 0 33 0 11111111111111111111111 33 99 222 6 111 888 55
lowQualScore : . . . .. . . . . . . . . . . .. .. .. . . . . . . . . . . . . . . .. . . . .... . . . . . . ... . .. . . ..... . . . .. .... ...... ....... . .. .. . .. . .... ....... ... . . . ... . ....... .. . ........... . .. . . . .... ...... ....... .. . ... . . . . . .. . . ............ ... . ... ...... . ..... .. ........ ............ . .................. . ... . ................. ..... . .. . .... ..... .... . ... .... ... . . .... . ............... . .. ........... . .. . ....................... .. .. ... . ... ... ..
lowQualScore : 0 5 5 00 3 2 2 0 0 0 2 0 5 5 88 55 88 0 2 0 0 2 0 0 0 0 0 2 0 0 0 88 2 2 5 2222 0 0 6 0 8 2 000 5 88 5 0 00000 8 8 0 88 8888 000000 8888888 6 66 00 8 44 0 4444 0000000 000 8 0 5 555 3 3333333 88 2 00000000000 2 22 0 8 0 2222 000000 3333333 22 7 777 5 5 3 7 7 22 0 3 333333333333 777 7 444 444444 7 33333 77 11111111 777777777777 0 666666666666666666 7 444 7 44444444444444444 33333 0 99 0 6666 55555 8888 2 888 4444 000 0 0 0000 8 222222222222222 0 00 00000000000 8 00 8 77777777777777777777777 33 22 555 7 777 777 00
consensus : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAAT-CTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCA-CACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-------A--GACATCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTATTCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAATTC--A----AGT--ATA--TA---AATTTACATGA-TT----------AA-C-T-GA-TAAAGAAAA------ATTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-TGCCTTGGGTAGACT---T-CTTCAC-GATAA----TTTACC-----TA-AC--CTATTTC-A--TT--TT--A----TCTTGG-TCGAATT-----------------------TT-GAGC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGT
Reference ( family-1839 ) : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGGGTTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAAC-CTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCA-CACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-------A-CGACATCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTATTCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAATTC--A----AGT--ATA--TA---AATTNACATGA-TT----------AA-C-T-GA-TAAAGAAAA------ATTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-TGCCTTGGGTAGACT---T-CTTCAC-GATAA----TTTACC-----TA-AC--CTATTTC-A--TT--TT--A----TCTTGG-TCGAATT-----------------------TT-GAGC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGT
gi|1 : AATG-TCTTTGATCACAT-ATTAAACCAATCTATTATATGG-TTCTGAAA---TACGGGATACT-GAATATTAAGAACACTGAA-CTCAATCAACT-GATAATATTCAAATAGAAGATGAGTACA-AACCAGTTAA--ATGTGGTAATTAT-T-CAT-CAAATTTTTGC------------------------A-AATCTTTC-AACCCATGCTTCTCCTCTT-GAGTTGGGTAAAAC-ACCGACTACATTATGATACAGTCAAGA--GCA-------------TCGTTGATTAGAAGAATAGTCTTAT-TGGA-TTTCCACTTTTAAAGGATG-CTTTCTAAGTAGGAAGC-TCTGCACCATAACCACACAACTTC---T-GTATTCAGTCCAAATTGGCAACT-GTGTAATATTTCTAATGCCAAGGG-AA--AGCTCGATGTCTCTGGGAAAGA-------------------TA-CACAA----TGATTCATTCAAATATTCAT-CA-ATTGGAAA--T-ACA-------ATAACT---TGAAAG-TGGAAAATTT
gi|10 : ggggatgtataccctatcttttaagattcctacaattcggggcccagctgaccccaattaactacagaggggaattatcataactcgtatctgagtaaactatttttttaaaatgccattctgaataataatagattagataaattttagaacaaatacaatgtcatccttgctagcacaaattggttttccaaacatgcttgacaactgcagtgatcaactgtttcattcttaagtctagttaagaaatatgtgtagcacaaaagcggagtagactattgtttgatgtcattgttccaaaaggcttttgatagtgtaatacattgtagagctagaattgaaatactctgctaaatatagttctagcttatgaaacaactaaatatgtatgttgaaaagtggaaaccctgcagtttaaattaaatgctcttcacttcttattccgtattaatttatggtgtacgtcaaggttaaatctcagttcctggtcttttcaaaaatttctccaatgattacatgtaccaaaattcagagaaagctttacgatgagttaaaattacagtatggaaaaaattgcggcctaatgatgcagatgtatattttacatctccagaaggctcccaaaagaatttaactgacagaaaatactgtaagattgggaattaagttaacttgcacaaaacaaaataatttacatttaattaaggctgaacagcccataaaacataaatttctttggtaaaaaacccgaaatgatgtggatcaaactatatacttgggatattatgttttatgcatctgaaacattgttttatggcaaaatcctctcaaacatagttcaaattaagacgatatttttttagttttaaaccaggaattaaagaacatgtat-----------------------TT-GAGC--AATGT-AT-GACTCCT---TCC-C-TCTTGT--CCAATa
gi|11 : cgaaaAAAT-GTACAGGAAATTTATTTG-A-AGATG--AGATTCACTTCCTTATTCAATTTAACAAGCATATAAT-CATTGTTTAATGGA-GAAAC-CATTTAAAACAGAA-C-----ATGTGA------A----AGT--G-----A---AGTTTAC-TGATTT----------AT-C-T-GA-TAAAGAAAA--------CT-------TTT-----TTGAATTT--TA-A----AT-----Tacagttttgtctttttttcaaagtttgtcattatgtctcactttatgttagtttcttttcttaatgtatgttatgctccttttgccctgcttgggctctgaattagcaataaaatctatttta
gi|13 : t--GTCTCTGGGAAAGAG------CAGTTATA-A-------CAA-TGATA--TCATTCAAATATTTA-ACAGATTGGAAATGT-ACATACGTATATAACAACTTGAAAGATAGGAAGTTTG-T
gi|15 : ttTATTTA------AA-T-----CTGTACCTTCGAA----AGT--GAG--CA---AATTTAC-TGA-TT----------TATC-T-GA-TAAAGAAAA------A---AAAA---TGT-----TGG-ATTT--CA-A----AT-----TG
gi|16 : TA-ATGGC-G--CTTG---T--AGAT--GTT--ACAG--TATTCCCTGAAATG---AAAGAATTTGCAAAAAc
gi|2 : TATATGGGTTCTGAAAATGTGCACACTACTTAAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAA-ATTGTTACACAA--AGCTAACGGTGTG--AGTTACCTACATTCAAAATTTTGCAAATATATATTAGGAATAAA-AAAACAATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAAAAGCATATTCAAATACTG-CATAG-TTAGAA----AATC-TATCTGAA-TTTCCACGTTTAAAGGATGCCTTTCTATACAGTAAGTATTTGCACCATAACCATAAAACGTCGCATGGTATTC--TCC-AGTTGTAAAACTCTGTAATATTTTTAATGCTAATGATAACCATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCAACACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGTGACAAAC---TACAACA---CGAAAGATGGAAAGCTTGGTCACATCCTTATTTTTAAAATCAAACT-GCTTGTTGGAAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-------AACGACATCATCACA-CAACTTCTTAGATTGG-A-GCTGG---CTGAGATT-GT---ACAC--TACCCCCAGGAATG---AAAGAATTTGCAAAA-TTGCACACAAAATGTAGT-G-A-AGATGTGAAATTCACTTCCTTAT-CAATGTGACAA--ATTTAGTTCAACA---AAGAGAAGAAACT-ATTTA------GA-C-----TTGTAAATTC--A----AGT--ATA---A---AATTTA-ATGA-TT----------AA-CCT-GAATAAAGAAAA------GTTTGTTGTTTTTT-----TTATATTT--TA-A----AT------GTG----AAGATATTGAAATCATGAA-TGCTTTGGG-ATACT---TTCTTCATTGATAAAT--TTTACC-----TA-AC--C-ATTTC-A--TT--TT--A----TCTTG--TCGAATTGAACAATGATACTTCCTTCCCTCTT-GTGCCCAATGTAATCGACTCCT---TCC-CTTCTTGT
gi|3 : AATGCTCTTTGATC-CATTATTAAACCAATTTTATATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTCAAA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAATTTTCCAC-TTTAAAGGATG-CTTTC-ATACAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAAT-CTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-CATCA-CACAAATTTTG--TCA-TCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGT---GAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAG-TTCAG----------GACATCATCACACAGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACCCCCAGGAATG---AAAGAATTTGCAAAAATTGCACACAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTA-TCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAATTC--A----AGT--ATA--TA---AATTAAAATGA-TT----------AA-C-T-GA-TAAAGAAAAGTTGTTGTTT-------TTT-----TTT-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-T-CTTTGGGT--ACT---T-CTTCAT-GATAA----TTTACC-----TA-AC--CTATTTC-A--TTC-TT--A----TCTTGG-TCGAA-T-----------------------TT-GAAC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGTc
gi|4 : TCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTA
gi|4 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnnATATGGGCAACACT-AAATACTAAGAGCACT-AAACTAAATCAAGTAGATAATGTTCAAACAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAATAAAA-AATCTGTC-AA-TCATGATTCT-CTCTCAGAACTGGGT-AGACATCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAC----AATC-TAGCTAAA-TGTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CT-C-AGTTGTAA-----------------------AATGA-AA--ATAT----GTCTCTTGGAAAGAGTAACTTCAGCTCTACAATCA-CAAAAATTTTG--TCATTCAAATATTTA-ACA-----------------------ACAACA---TGAAAGATGGAAAACTTG-TCACATACTTAATTTTAAAATCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatgggcaacactaaatactaagagcactaaactaaatcaagtagataatgttcaaacagaagattgttacacaaagctaaggtgtgagttactacatcaaaaatttgcaaatatatattaggaataaataaaaaatctgtcaatcatgattctctctcagaactgggtagacatccactgcattatgatatagtccaaagcatattcaaatactgtcataggttagacaatctagctaaatgtccacttttaaaggatgcctttctatgcagtaagtatttgcaccataaccataaaacgtcatggtattcctcagttgtaaaatgaaaatatgtctcttggaaagagtaacttcagctctacaatcacaaaaattttgtcattcaaatatttaacaacaacatgaaagatggaaaacttgtcacatacttaattttaaaatca
gi|5 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnntctgaatttccacttttaaaggatgcctttctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCAGTTA-TAACTACAAAATAAAATATAGAAGATCAATTGGTATAGATTCAG-------A---GTATCATCACA--GACTT-TTA-ATTGA-A-ACTGG---T--AGAT--ACT--GCAA--TATTCACAGGAATG---AAAAAA----AAAAAATTGCA-----AATGTAGT-GCA-AGATG--AAATTCACTTCTTTATTCAATGAGGCAA--ATTTAGT-CAACA---AAGAGA-GAAA-TTATTTA------GA-C-----TTGTGCATT-------------------------TTCAAAAG--TG----------AA-C-------AAAGAAAA------ACTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATGTCGAAATCATGAA-CTCCTTGGGTAGATT---T-CTTCAC-GATAAGCTGTTT--------TA-A----TTCTGC-A--TT--TTAAA----TGTTAGCTTGAATT-----------------------CT--AGG--AAC---AT-GACCCCT---TCC-T-TGTTGT--CCAAT
gi|6 : atacctatctttacacatgcT-ATT--ACAA--T-TTCCCAGGAATG---AA-GAATTTGCAAAAAATGCACAGAAAA--TAGTGG-A-AGATG--AAATT-ACTTCCTTATTCAATATAA-------------CAGCA---AAGAGA-AAA--TTATTTA------GG-C-----TTGTACATTC--A----AATGAATATTTACTTGATTTACATG--TA----------AA-C-T-GA-TAAAG---A------ATTT-------TTTGTGTGTGG-ATTT--T--A----AT-----TGTGTAATAAGATA--GAAATTAAGAA---CCTTGGGTAGATT---T-CTTCAC-GATAA----TTTACCCTAGTCA-AT--TTAATTC-ACTTT--TT--AAATGTC-TAT-TTGAATT-----------------------TT--AGC--AAT---AT-GACCCCT---TCCTT-TCTTAT--CCAATGccaattttgtcctaatcttaatacatgtacttgtctctttctctcatttaattcctgttagctctgtctttttgttctctttcctggtgtatgctgtgcactttaaatgccctgtttaggctctgaattagagaataacatctattct
gi|7 : gGATCAGTT--TGTAGATTCAGCATTGAGA-AAAC-TCATTACA-AGACTT-T-A-ATTAACGTACCGGCGAT--AGTTTCACTTAACAGAGTGCGCGCAAGGATGTGGAAAGCATTTCAAAAAATTGCGAAGAAAATGTAGA-G-ACAGATA--AAAT-CACTTC-TTGT-CG--GTGAC------------CAAGA---GCGTGA-GAGAGTGATTTA------GAGCGTGAATTGTAAATTC--AGAAGAGT--A-A--TAG--AGCTAATGTAA-TTCGAGTGTGGAGA-C-TAGA-TAAAAAGAA------ATTT-------TTT-----TTA-ACTTGGTA-ATGTGATAAGAGTGTGT---GAGATATTGAGAcatttccctaattttcagtgatgtgtcatatatgtactcatttatcgtaccattgtagatgtcttttcttctttctttttt
gi|8 : tagaagcaatgTG-ATTT--TGGA----AT-----TGTG----A-GATATTGAAAT-ATGAAATGCCTTGGGTAG-CTTTGT-CTTCAT-GATAA----TTTACC-----TAGACCGCT-TTTCAA--TTTATT--A----TCTTGG-TCGAATT-----------------------TTGGAGC--GATG--TT-GACTCCTTTGTCC-C-TCTTGTGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAGAAGTCTCATCTGCTATTAGTTCATTGAAAACTGGAAAAGCAAAGGGTCTGGATCTAATATCTATTTTCATTTTTTGTCTCTCAAACACATACTATCCAGAAGCATGGGCAAACGGGTATATATCCCCCTTTTTTAAAATCAGGGAACCCAGTTGACCCCAATAACTAAAGAGGAATTGCCATAACTAGTAAT
Unaligned ( gi|12 ): TCTTGTGCAATACAATTTTGTCTTTTTTTCAAAGTTTGTCATTTAGTTCCACTTTATGTTAAGCTTTCTTTTCTTAATGTATGTTTATGCTCCTTTTTGCCCTGCTTGGGCTCTGAATTAGCAATAAAATCTATTT
Unaligned ( gi|14 ): AAATATGAAATTGATACAATATGATGCCCAGTGATAATCCTACTATTGTGCAATACAATTTTGTCCTTTTCTGAATGTGTGTCATTATGTCT
Unaligned ( gi|17 ): GCTCTGAATTAGCAATAAATCTATTCTATTCATAG
Alignments
lowQualScore : 1 1 1 1 1 1 1 11 11 11 1 1 1 1 1 1 1 1 1 1 11 2222 1 1 111 11 1 111 1 11 1111 1111111 1 11 11 1 2222222 111 1 1 222 4444444 11 44444444 11 11 1 1111 111111 1111111 111 1 111111111111 111 111111 11111 1111 1111 55555555555555555555555555555555555555555 44444444444444444 11111 1 1111 11111 2222 222 111 2222 222222222222222 11 22222222222 11 66666666666666666666666 11 222 111 22
lowQualScore : 5 5 5 22 3 3 0 0 0 0 3 1 2 2 33 22 33 0 3 0 1 3 0 0 0 0 0 3 0 0 0 33 3 3 6 1111 0 8 5 0 0 3 777 2 88 2 0 666 2 0 0 0 33 8888 888888 6666666 0 11 11 0 11 0 9999 6666666 444 0 0 5 000 7 3333333 33 3 22222222 33 33 99 0 0 8 6666 999999 4444444 99 1 111 2 2 3 6 6 99 1 7 777777777777 111 6 999 666666 5 44444 0000 77 2222 33333333333333333333333333333333333333333 555 5 00000000000000000 44444 0 66 5 0000 22222 0000 3 111 2222 444 8 8 8888 0 333333333333333 8 11 00000000000 0 33 0 11111111111111111111111 33 99 222 6 111 888 55
lowQualScore : . . . .. . . . . . . . . . . .. .. .. . . . . . . . . . . . . . . .. . . . .... . . . . . . ... . .. . . ... . . . . .. .... ...... ....... . .. .. . .. . .... ....... ... . . . ... . ....... .. . ........ .. .. .. . . . .... ...... ....... .. . ... . . . . . .. . . ............ ... . ... ...... . ..... .... .. .... ......................................... ... . ................. ..... . .. . .... ..... .... . ... .... ... . . .... . ............... . .. ........... . .. . ....................... .. .. ... . ... ... ..
lowQualScore : 0 5 5 00 3 2 2 0 0 0 2 0 5 5 88 55 88 0 2 0 0 2 0 0 0 0 0 2 0 0 0 88 2 2 5 2222 0 0 6 0 8 2 000 5 88 5 0 222 5 8 8 0 88 8888 000000 8888888 6 66 00 8 44 0 4444 0000000 000 8 0 5 555 3 3333333 88 2 00000000 55 88 22 0 8 0 2222 000000 3333333 22 7 777 5 5 3 7 7 22 0 3 333333333333 777 7 444 444444 7 33333 6666 99 1111 44444444444444444444444444444444444444444 999 7 44444444444444444 33333 0 99 0 6666 55555 8888 2 888 4444 000 0 0 0000 8 222222222222222 0 00 00000000000 8 00 8 77777777777777777777777 33 22 555 7 777 777 00
consensus : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCA-CACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----A--GACA--TCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTATTCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAA--TTC--A----AGT--ATA--TA---AATTTACATG--A-TT----------AA-C-T-GA-TAAAGAAAA------ATTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-TGCCTTGGGTAGACT---T-CTTCAC-GATAA----TTTACC-----TA-AC--CTATTTC-A--TT--TT--A----TCTTGG-TCGAATT-----------------------TT-GAGC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGT
Reference ( family-1839 ) : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCA-CACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----A--GACA--TCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTATTCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAA--TTC--A----AGT--ATA--TA---AATTTACATG--A-TT----------AA-C-T-GA-TAAAGAAAA------ATTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-TGCCTTGGGTAGACT---T-CTTCAC-GATAA----TTTACC-----TA-AC--CTATTTC-A--TT--TT--A----TCTTGG-TCGAATT-----------------------TT-GAGC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGT
gi|1 : AATG-TCTTTGATCACAT-ATTAAACCAATCTATTATATGG-TTCTGAAA---TACGGGATACT-GAATATTAAGAACACTGAA-CTCAATCAACT-GATAATATTCAAATAGAAGATGAGTACA-AACCAGTTAA--ATGTGGTAATTAT-T-CAT-CAAATTTTTGC------------------------A-AATCTTTC-AACCCATGCTTCTCCTCTT-GAGTTGGGTAAAAC-ACCGACTACATTATGATACAGTCAAGA--GCA-------------TCGTTGATTAGAAGAATAGTCTTAT-TGGA-TTTCCACTTTTAAAGGATG-CTTTCTAAGTAGGAAGC-TCTGCACCATAACCACACAACTTC---T-GTATTCAGTCCAAATTGGCAAC-TGTGTAATATTTCTAATGCCAAGGG-AA--AGCTCGATGTCTCTGGGAAAGA-------------------TA-CACAA----TGATTCATTCAAATATTCAT-CA-ATTGGAAA--T-ACA-------ATAACT---TGAAAG-TGGAAAATTT
gi|10 : ggggatgtataccctatcttttaagattcctacaattcggggcccagctgaccccaattaactacagaggggaattatcataactcgtatctgagtaaactatttttttaaaatgccattctgaataataatagattagataaattttagaacaaatacaatgtcatccttgctagcacaaattggttttccaaacatgcttgacaactgcagtgatcaactgtttcattcttaagtctagttaagaaatatgtgtagcacaaaagcggagtagactattgtttgatgtcattgttccaaaaggcttttgatagtgtaatacattgtagagctagaattgaaatactctgctaaatatagttctagcttatgaaacaactaaatatgtatgttgaaaagtggaaaccctgcagtttaaattaaatgctcttcacttcttattccgtattaatttatggtgtacgtcaaggttaaatctcagttcctggtcttttcaaaaatttctccaatgattacatgtaccaaaattcagagaaagctttacgatgagttaaaattacagtatggaaaaaattgcggcctaatgatgcagatgtatattttacatctccagaaggctcccaaaagaatttaactgacagaaaatactgtaagattgggaattaagttaacttgcacaaaacaaaataatttacatttaattaaggctgaacagcccataaaacataaatttctttggtaaaaaacccgaaatgatgtggatcaaactatatacttgggatattatgttttatgcatctgaaacattgttttatggcaaaatcctctcaaacatagttcaaattaagacgatatttttttagttttaaaccaggaattaaagaacatgtat-----------------------TT-GAGC--AATGT-AT-GACTCCT---TCC-C-TCTTGT--CCAATa
gi|11 : cgaaaAAAT-GTACAGGAAATTTATTTG-A-AGATG--AGATTCACTTCCTTATTCAATTTAACAAGCATATAAT-CATTGTTTAATGGA-GAAAC-CATTTAAAACAGAA-C-----ATGTGA--------A----AGT--G-----A---AGTTTAC-TG--ATTT----------AT-C-T-GA-TAAAGAAAA--------CT-------TTT-----TTGAATTT--TA-A----AT-----Tacagttttgtctttttttcaaagtttgtcattatgtctcactttatgttagtttcttttcttaatgtatgttatgctccttttgccctgcttgggctctgaattagcaataaaatctatttta
gi|13 : t--GTCTCTGGGAAAGAG------CAGTTATA-A-------CAA-TGATA--TCATTCAAATATTTA-ACAGATTGGAAATGT-ACATACGTATATAACAACTTGAAAGATAGGAAGTTTG-T
gi|15 : ttTATTTA------AA-T-----CTGTACC--TTCGAA----AGT--GAG--CA---AATTTAC-TG--A-TT----------TATC-T-GA-TAAAGAAAA------A---AAAA---TGT-----TGG-ATTT--CA-A----AT-----TG
gi|16 : TA-ATGGC-G--CTTG---T--AGAT--GTT--ACAG--TATTCCCTGAAATG---AAAGAATTTGCAAAAAc
gi|2 : TATATGGGTTCTGAAAATGTGCACACTACTTAAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAA-ATTGTTACACAA--AGCTAACGGTGTG--AGTTACCTACATTCAAAATTTTGCAAATATATATTAGGAATAAA-AAAACAATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAAAAGCATATTCAAATACTG-CATAG-TTAGAA----AATC-TATCTGAA-TTTCCACGTTTAAAGGATGCCTTTCTATACAGTAAGTATTTGCACCATAACCATAAAACGTCGCATGGTATTC--TCC-AGTTGTAAAACTCTGTAATATTTTTAATGCTAATGATAACCATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCAACACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGTGACAAAC---TACAACA---CGAAAGATGGAAAGCTTGGTCACATCCTTATTTTTAAAATCAAACT-GCTTGTTGGAAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----AACGACA--TCATCACA-CAACTTCTTAGATTGG-A-GCTGG---CTGAGATT-GT---ACAC--TACCCCCAGGAATG---AAAGAATTTGCAAAA-TTGCACACAAAATGTAGT-G-A-AGATGTGAAATTCACTTCCTTAT-CAATGTGACAA--ATTTAGTTCAACA---AAGAGAAGAAACT-ATTTA------GA-C-----TTGTAAA--TTC--A----AGT--ATA---A---AATTTA-ATG--A-TT----------AA-CCT-GAATAAAGAAAA------GTTTGTTGTTTTTT-----TTATATTT--TA-A----AT------GTG----AAGATATTGAAATCATGAA-TGCTTTGGG-ATACT---TTCTTCATTGATAAAT--TTTACC-----TA-AC--C-ATTTC-A--TT--TT--A----TCTTG--TCGAATTGAACAATGATACTTCCTTCCCTCTT-GTGCCCAATGTAATCGACTCCT---TCC-CTTCTTGT
gi|3 : AATGCTCTTTGATC-CATTATTAAACCAATTTTATATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTCAAA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAATTTTCCAC-TTTAAAGGATG-CTTTC-ATACAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-CATCA-CACAAATTTTG--TCA-TCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGT---GAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAG-TTCAG--------GACA--TCATCACACAGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACCCCCAGGAATG---AAAGAATTTGCAAAAATTGCACACAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTA-TCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAA--TTC--A----AGT--ATA--TA---AATTAAAATG--A-TT----------AA-C-T-GA-TAAAGAAAAGTTGTTGTTT-------TTT-----TTT-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-T-CTTTGGGT--ACT---T-CTTCAT-GATAA----TTTACC-----TA-AC--CTATTTC-A--TTC-TT--A----TCTTGG-TCGAA-T-----------------------TT-GAAC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGTc
gi|4 : TCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTA
gi|4 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnnATATGGGCAACACT-AAATACTAAGAGCACT-AAACTAAATCAAGTAGATAATGTTCAAACAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAATAAAA-AATCTGTC-AA-TCATGATTCT-CTCTCAGAACTGGGT-AGACATCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAC----AATC-TAGCTAAA-TGTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CT-C-AGTTGTAA-----------------------AATGA-AA--ATAT----GTCTCTTGGAAAGAGTAACTTCAGCTCTACAATCA-CAAAAATTTTG--TCATTCAAATATTTA-ACA-----------------------ACAACA---TGAAAGATGGAAAACTTG-TCACATACTTAATTTTAAAATCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatgggcaacactaaatactaagagcactaaactaaatcaagtagataatgttcaaacagaagattgttacacaaagctaaggtgtgagttactacatcaaaaatttgcaaatatatattaggaataaataaaaaatctgtcaatcatgattctctctcagaactgggtagacatccactgcattatgatatagtccaaagcatattcaaatactgtcataggttagacaatctagctaaatgtccacttttaaaggatgcctttctatgcagtaagtatttgcaccataaccataaaacgtcatggtattcctcagttgtaaaatgaaaatatgtctcttggaaagagtaacttcagctctacaatcacaaaaattttgtcattcaaatatttaacaacaacatgaaagatggaaaacttgtcacatacttaattttaaaatca
gi|5 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnntctgaatttccacttttaaaggatgcctttctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCAGTTA-TAACTACAAAATAAAATATAGAAGATCAATTGGTATAGATTCAG-----A--G-TA--TCATCACA--GACTT-TTA-ATTGA-A-ACTGG---T--AGAT--ACT--GCAA--TATTCACAGGAATG---AAAAAA----AAAAAATTGCA-----AATGTAGT-GCA-AGATG--AAATTCACTTCTTTATTCAATGAGGCAA--ATTTAGT-CAACA---AAGAGA-GAAA-TTATTTA------GA-C-----TTGTGCATTTTC--A----A----------A---A------GTG--A---------------------A-CAAAGAAAA------ACTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATGTCGAAATCATGAA-CTCCTTGGGTAGATT---T-CTTCAC-GATAAGCTGTTT--------TA-A----TTCTGC-A--TT--TTAAA----TGTTAGCTTGAATT-----------------------CT--AGG--AAC---AT-GACCCCT---TCC-T-TGTTGT--CCAAT
gi|6 : atacctatctttacacatgcT-ATT--ACAA--T-TTCCCAGGAATG---AA-GAATTTGCAAAAAATGCACAGAAAA--TAGTGG-A-AGATG--AAATT-ACTTCCTTATTCAATATAA-------------CAGCA---AAGAGA-AAA--TTATTTA------GG-C-----TTGTACA--TTC--A----AATGAATATTTACTTGATTTACATG----TA----------AA-C-T-GA-TAAAG---A------ATTT-------TTTGTGTGTGG-ATTT--T--A----AT-----TGTGTAATAAGATA--GAAATTAAGAA---CCTTGGGTAGATT---T-CTTCAC-GATAA----TTTACCCTAGTCA-AT--TTAATTC-ACTTT--TT--AAATGTC-TAT-TTGAATT-----------------------TT--AGC--AAT---AT-GACCCCT---TCCTT-TCTTAT--CCAATGccaattttgtcctaatcttaatacatgtacttgtctctttctctcatttaattcctgttagctctgtctttttgttctctttcctggtgtatgctgtgcactttaaatgccctgtttaggctctgaattagagaataacatctattct
gi|7 : gGATCAGTT--TGTAGATTCAGCATTGA--GAAAACTCATTACA-AGACTT-T-A-ATTAACGTACCGGCGAT--AGTTTCACTTAACAGAGTGCGCGCAAGGATGTGGAAAGCATTTCAAAAAATTGCGAAGAAAATGTAGA-G-ACAGATA--AAAT-CACTTC-TTGT-CG--GTGAC------------CAAGA---GCGTGA-GAGAGTGATTTA------GAGCGTGAATTGTAAA--TTC--AGAAGAGT--A-A--TA---GAGCTA-ATGTAA-TTCGAGTGTGGAGA-C-TAGA-TAAAAAGAA------ATTT-------TTT-----TTA-ACTTGGTA-ATGTGATAAGAGTGTGT---GAGATATTGAGAcatttccctaattttcagtgatgtgtcatatatgtactcatttatcgtaccattgtagatgtcttttcttctttctttttt
gi|8 : tagaagcaatgTG-ATTT--TGGA----AT-----TGTG----A-GATATTGAAAT-ATGAAATGCCTTGGGTAG-CTTTGT-CTTCAT-GATAA----TTTACC-----TAGACCGCT-TTTCAA--TTTATT--A----TCTTGG-TCGAATT-----------------------TTGGAGC--GATG--TT-GACTCCTTTGTCC-C-TCTTGTGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAGAAGTCTCATCTGCTATTAGTTCATTGAAAACTGGAAAAGCAAAGGGTCTGGATCTAATATCTATTTTCATTTTTTGTCTCTCAAACACATACTATCCAGAAGCATGGGCAAACGGGTATATATCCCCCTTTTTTAAAATCAGGGAACCCAGTTGACCCCAATAACTAAAGAGGAATTGCCATAACTAGTAAT
Unaligned ( gi|12 ): TCTTGTGCAATACAATTTTGTCTTTTTTTCAAAGTTTGTCATTTAGTTCCACTTTATGTTAAGCTTTCTTTTCTTAATGTATGTTTATGCTCCTTTTTGCCCTGCTTGGGCTCTGAATTAGCAATAAAATCTATTT
Unaligned ( gi|14 ): AAATATGAAATTGATACAATATGATGCCCAGTGATAATCCTACTATTGTGCAATACAATTTTGTCCTTTTCTGAATGTGTGTCATTATGTCT
Unaligned ( gi|17 ): GCTCTGAATTAGCAATAAATCTATTCTATTCATAG
Alignments
lowQualScore : 1 1 1 1 1 1 1 11 11 11 1 1 1 1 1 1 1 1 1 1 11 2222 1 1 111 11 1 111 1 11 1111 1111111 1 11 11 1 2222222 111 1 1 222 4444444 11 44444444 11 11 1 1111 111111 1111111 111 1 111111111111 111 111111 11111 1111 1111 55555555555555555555555555555555555555555 44444444444444444 11111 1 1111 11111 2222 222 111 2222 222222222222222 11 22222222222 11 66666666666666666666666 11 222 111 22
lowQualScore : 5 5 5 22 3 3 0 0 0 0 3 1 2 2 33 22 33 0 3 0 1 3 0 0 0 0 0 3 0 0 0 33 3 3 6 1111 0 8 5 0 0 3 777 2 88 2 0 666 2 0 0 0 33 8888 888888 6666666 0 11 11 0 11 0 9999 6666666 444 0 0 5 000 7 3333333 33 3 22222222 33 33 99 0 0 8 6666 999999 4444444 99 1 111 2 2 3 6 6 99 1 7 777777777777 111 6 999 666666 5 44444 0000 77 2222 33333333333333333333333333333333333333333 555 5 00000000000000000 44444 0 66 5 0000 22222 0000 3 111 2222 444 8 8 8888 0 333333333333333 8 11 00000000000 0 33 0 11111111111111111111111 33 99 222 6 111 888 55
lowQualScore : . . . .. . . . . . . . . . . .. .. .. . . . . . . . . . . . . . . .. . . . .... . . . . . . ... . .. . . ... . . . . .. .... ...... ....... . .. .. . .. . .... ....... ... . . . ... . ....... .. . ........ .. .. .. . . . .... ...... ....... .. . ... . . . . . .. . . ............ ... . ... ...... . ..... .... .. .... ......................................... ... . ................. ..... . .. . .... ..... .... . ... .... ... . . .... . ............... . .. ........... . .. . ....................... .. .. ... . ... ... ..
lowQualScore : 0 5 5 00 3 2 2 0 0 0 2 0 5 5 88 55 88 0 2 0 0 2 0 0 0 0 0 2 0 0 0 88 2 2 5 2222 0 0 6 0 8 2 000 5 88 5 0 222 5 8 8 0 88 8888 000000 8888888 6 66 00 8 44 0 4444 0000000 000 8 0 5 555 3 3333333 88 2 00000000 55 88 22 0 8 0 2222 000000 3333333 22 7 777 5 5 3 7 7 22 0 3 333333333333 777 7 444 444444 7 33333 6666 99 1111 44444444444444444444444444444444444444444 999 7 44444444444444444 33333 0 99 0 6666 55555 8888 2 888 4444 000 0 0 0000 8 222222222222222 0 00 00000000000 8 00 8 77777777777777777777777 33 22 555 7 777 777 00
consensus : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCA-CACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----A--GACA--TCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTATTCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAA--TTC--A----AGT--ATA--TA---AATTTACATG--A-TT----------AA-C-T-GA-TAAAGAAAA------ATTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-TGCCTTGGGTAGACT---T-CTTCAC-GATAA----TTTACC-----TA-AC--CTATTTC-A--TT--TT--A----TCTTGG-TCGAATT-----------------------TT-GAGC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGT
Reference ( family-1839 ) : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCA-CACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----A--GACA--TCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTATTCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAA--TTC--A----AGT--ATA--TA---AATTTACATG--A-TT----------AA-C-T-GA-TAAAGAAAA------ATTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-TGCCTTGGGTAGACT---T-CTTCAC-GATAA----TTTACC-----TA-AC--CTATTTC-A--TT--TT--A----TCTTGG-TCGAATT-----------------------TT-GAGC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGT
gi|1 : AATG-TCTTTGATCACAT-ATTAAACCAATCTATTATATGG-TTCTGAAA---TACGGGATACT-GAATATTAAGAACACTGAA-CTCAATCAACT-GATAATATTCAAATAGAAGATGAGTACA-AACCAGTTAA--ATGTGGTAATTAT-T-CAT-CAAATTTTTGC------------------------A-AATCTTTC-AACCCATGCTTCTCCTCTT-GAGTTGGGTAAAAC-ACCGACTACATTATGATACAGTCAAGA--GCA-------------TCGTTGATTAGAAGAATAGTCTTAT-TGGA-TTTCCACTTTTAAAGGATG-CTTTCTAAGTAGGAAGC-TCTGCACCATAACCACACAACTTC---T-GTATTCAGTCCAAATTGGCAAC-TGTGTAATATTTCTAATGCCAAGGG-AA--AGCTCGATGTCTCTGGGAAAGA-------------------TA-CACAA----TGATTCATTCAAATATTCAT-CA-ATTGGAAA--T-ACA-------ATAACT---TGAAAG-TGGAAAATTT
gi|10 : ggggatgtataccctatcttttaagattcctacaattcggggcccagctgaccccaattaactacagaggggaattatcataactcgtatctgagtaaactatttttttaaaatgccattctgaataataatagattagataaattttagaacaaatacaatgtcatccttgctagcacaaattggttttccaaacatgcttgacaactgcagtgatcaactgtttcattcttaagtctagttaagaaatatgtgtagcacaaaagcggagtagactattgtttgatgtcattgttccaaaaggcttttgatagtgtaatacattgtagagctagaattgaaatactctgctaaatatagttctagcttatgaaacaactaaatatgtatgttgaaaagtggaaaccctgcagtttaaattaaatgctcttcacttcttattccgtattaatttatggtgtacgtcaaggttaaatctcagttcctggtcttttcaaaaatttctccaatgattacatgtaccaaaattcagagaaagctttacgatgagttaaaattacagtatggaaaaaattgcggcctaatgatgcagatgtatattttacatctccagaaggctcccaaaagaatttaactgacagaaaatactgtaagattgggaattaagttaacttgcacaaaacaaaataatttacatttaattaaggctgaacagcccataaaacataaatttctttggtaaaaaacccgaaatgatgtggatcaaactatatacttgggatattatgttttatgcatctgaaacattgttttatggcaaaatcctctcaaacatagttcaaattaagacgatatttttttagttttaaaccaggaattaaagaacatgtat-----------------------TT-GAGC--AATGT-AT-GACTCCT---TCC-C-TCTTGT--CCAATa
gi|11 : cgaaaAAAT-GTACAGGAAATTTATTTG-A-AGATG--AGATTCACTTCCTTATTCAATTTAACAAGCATATAAT-CATTGTTTAATGGA-GAAAC-CATTTAAAACAGAA-C-----ATGTGA--------A----AGT--G-----A---AGTTTAC-TG--ATTT----------AT-C-T-GA-TAAAGAAAA--------CT-------TTT-----TTGAATTT--TA-A----AT-----Tacagttttgtctttttttcaaagtttgtcattatgtctcactttatgttagtttcttttcttaatgtatgttatgctccttttgccctgcttgggctctgaattagcaataaaatctatttta
gi|13 : t--GTCTCTGGGAAAGAG------CAGTTATA-A-------CAA-TGATA--TCATTCAAATATTTA-ACAGATTGGAAATGT-ACATACGTATATAACAACTTGAAAGATAGGAAGTTTG-T
gi|15 : ttTATTTA------AA-T-----CTGTACC--TTCGAA----AGT--GAG--CA---AATTTAC-TG--A-TT----------TATC-T-GA-TAAAGAAAA------A---AAAA---TGT-----TGG-ATTT--CA-A----AT-----TG
gi|16 : TA-ATGGC-G--CTTG---T--AGAT--GTT--ACAG--TATTCCCTGAAATG---AAAGAATTTGCAAAAAc
gi|2 : TATATGGGTTCTGAAAATGTGCACACTACTTAAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAA-ATTGTTACACAA--AGCTAACGGTGTG--AGTTACCTACATTCAAAATTTTGCAAATATATATTAGGAATAAA-AAAACAATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAAAAGCATATTCAAATACTG-CATAG-TTAGAA----AATC-TATCTGAA-TTTCCACGTTTAAAGGATGCCTTTCTATACAGTAAGTATTTGCACCATAACCATAAAACGTCGCATGGTATTC--TCC-AGTTGTAAAACTCTGTAATATTTTTAATGCTAATGATAACCATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCAACACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGTGACAAAC---TACAACA---CGAAAGATGGAAAGCTTGGTCACATCCTTATTTTTAAAATCAAACT-GCTTGTTGGAAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----AACGACA--TCATCACA-CAACTTCTTAGATTGG-A-GCTGG---CTGAGATT-GT---ACAC--TACCCCCAGGAATG---AAAGAATTTGCAAAA-TTGCACACAAAATGTAGT-G-A-AGATGTGAAATTCACTTCCTTAT-CAATGTGACAA--ATTTAGTTCAACA---AAGAGAAGAAACT-ATTTA------GA-C-----TTGTAAA--TTC--A----AGT--ATA---A---AATTTA-ATG--A-TT----------AA-CCT-GAATAAAGAAAA------GTTTGTTGTTTTTT-----TTATATTT--TA-A----AT------GTG----AAGATATTGAAATCATGAA-TGCTTTGGG-ATACT---TTCTTCATTGATAAAT--TTTACC-----TA-AC--C-ATTTC-A--TT--TT--A----TCTTG--TCGAATTGAACAATGATACTTCCTTCCCTCTT-GTGCCCAATGTAATCGACTCCT---TCC-CTTCTTGT
gi|3 : AATGCTCTTTGATC-CATTATTAAACCAATTTTATATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTCAAA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAATTTTCCAC-TTTAAAGGATG-CTTTC-ATACAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-CATCA-CACAAATTTTG--TCA-TCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGT---GAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAG-TTCAG--------GACA--TCATCACACAGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACCCCCAGGAATG---AAAGAATTTGCAAAAATTGCACACAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTA-TCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAA--TTC--A----AGT--ATA--TA---AATTAAAATG--A-TT----------AA-C-T-GA-TAAAGAAAAGTTGTTGTTT-------TTT-----TTT-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-T-CTTTGGGT--ACT---T-CTTCAT-GATAA----TTTACC-----TA-AC--CTATTTC-A--TTC-TT--A----TCTTGG-TCGAA-T-----------------------TT-GAAC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGTc
gi|4 : TCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTA
gi|4 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnnATATGGGCAACACT-AAATACTAAGAGCACT-AAACTAAATCAAGTAGATAATGTTCAAACAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAATAAAA-AATCTGTC-AA-TCATGATTCT-CTCTCAGAACTGGGT-AGACATCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAC----AATC-TAGCTAAA-TGTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CT-C-AGTTGTAA-----------------------AATGA-AA--ATAT----GTCTCTTGGAAAGAGTAACTTCAGCTCTACAATCA-CAAAAATTTTG--TCATTCAAATATTTA-ACA-----------------------ACAACA---TGAAAGATGGAAAACTTG-TCACATACTTAATTTTAAAATCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatgggcaacactaaatactaagagcactaaactaaatcaagtagataatgttcaaacagaagattgttacacaaagctaaggtgtgagttactacatcaaaaatttgcaaatatatattaggaataaataaaaaatctgtcaatcatgattctctctcagaactgggtagacatccactgcattatgatatagtccaaagcatattcaaatactgtcataggttagacaatctagctaaatgtccacttttaaaggatgcctttctatgcagtaagtatttgcaccataaccataaaacgtcatggtattcctcagttgtaaaatgaaaatatgtctcttggaaagagtaacttcagctctacaatcacaaaaattttgtcattcaaatatttaacaacaacatgaaagatggaaaacttgtcacatacttaattttaaaatca
gi|5 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnntctgaatttccacttttaaaggatgcctttctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCAGTTA-TAACTACAAAATAAAATATAGAAGATCAATTGGTATAGATTCAG-----A--G-TA--TCATCACA--GACTT-TTA-ATTGA-A-ACTGG---T--AGAT--ACT--GCAA--TATTCACAGGAATG---AAAAAA----AAAAAATTGCA-----AATGTAGT-GCA-AGATG--AAATTCACTTCTTTATTCAATGAGGCAA--ATTTAGT-CAACA---AAGAGA-GAAA-TTATTTA------GA-C-----TTGTGCATTTTC--A----A----------A---A------GTG--A---------------------A-CAAAGAAAA------ACTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATGTCGAAATCATGAA-CTCCTTGGGTAGATT---T-CTTCAC-GATAAGCTGTTT--------TA-A----TTCTGC-A--TT--TTAAA----TGTTAGCTTGAATT-----------------------CT--AGG--AAC---AT-GACCCCT---TCC-T-TGTTGT--CCAAT
gi|6 : atacctatctttacacatgcT-ATT--ACAA--T-TTCCCAGGAATG---AA-GAATTTGCAAAAAATGCACAGAAAA--TAGTGG-A-AGATG--AAATT-ACTTCCTTATTCAATATAA-------------CAGCA---AAGAGA-AAA--TTATTTA------GG-C-----TTGTACA--TTC--A----AATGAATATTTACTTGATTTACATG----TA----------AA-C-T-GA-TAAAG---A------ATTT-------TTTGTGTGTGG-ATTT--T--A----AT-----TGTGTAATAAGATA--GAAATTAAGAA---CCTTGGGTAGATT---T-CTTCAC-GATAA----TTTACCCTAGTCA-AT--TTAATTC-ACTTT--TT--AAATGTC-TAT-TTGAATT-----------------------TT--AGC--AAT---AT-GACCCCT---TCCTT-TCTTAT--CCAATGccaattttgtcctaatcttaatacatgtacttgtctctttctctcatttaattcctgttagctctgtctttttgttctctttcctggtgtatgctgtgcactttaaatgccctgtttaggctctgaattagagaataacatctattct
gi|7 : gGATCAGTT--TGTAGATTCAGCATTGA--GAAAACTCATTACA-AGACTT-T-A-ATTAACGTACCGGCGAT--AGTTTCACTTAACAGAGTGCGCGCAAGGATGTGGAAAGCATTTCAAAAAATTGCGAAGAAAATGTAGA-G-ACAGATA--AAAT-CACTTC-TTGT-CG--GTGAC------------CAAGA---GCGTGA-GAGAGTGATTTA------GAGCGTGAATTGTAAA--TTC--AGAAGAGT--A-A--TA---GAGCTA-ATGTAA-TTCGAGTGTGGAGA-C-TAGA-TAAAAAGAA------ATTT-------TTT-----TTA-ACTTGGTA-ATGTGATAAGAGTGTGT---GAGATATTGAGAcatttccctaattttcagtgatgtgtcatatatgtactcatttatcgtaccattgtagatgtcttttcttctttctttttt
gi|8 : tagaagcaatgTG-ATTT--TGGA----AT-----TGTG----A-GATATTGAAAT-ATGAAATGCCTTGGGTAG-CTTTGT-CTTCAT-GATAA----TTTACC-----TAGACCGCT-TTTCAA--TTTATT--A----TCTTGG-TCGAATT-----------------------TTGGAGC--GATG--TT-GACTCCTTTGTCC-C-TCTTGTGC
blockSeqs : C . T TA G A T . A A T G C . CG . C A T T A T C A . . A . A . AA T T G . . T G C A GCA G C C . AAC C T CC TA TAACTT AATCAA A GA . TA G TGTG TACGTAT ACT G T . A AATAAAA GG A CATTGA AC AC CA . G CGTA CGAT TCACTTA AG A TGG C C G C C TG C T AAATTTAGTT . A CTT . G GTGAA CATT GA GAAG AATAGAGCTAATGTAATTCGAGTGTGGAGA CT A GTTTGTTGTTT GTGTG T GG G TGTG AAGAG TAAT C ATG TAGA TTG . . GCTG CTAGTCAATTTA A CT TTAAATG GC GAACAATGATACTTCCTTCCCTC GG CC GTA C TTG CT GC
blockSeqs : . A . . . A T G C . G . . A . A A . . . . . A . . . . T T G . . . T C A A G C C . AA C . . TA TAACTT CAATCA A TT . TA G TGT AACT . . . . . A A AA . A . . AG CTG TATT . A . C C . . . . C T AAATTTAGT . . GTG . . . CC . . GAATATTTACTTGATTTACATGTAAA TA . GTTGTTGTTT . . . . . . T C CT TAGA . . . . TAGACCGCT . . TTAAA G . G . G . . TT GC
blockSeqs : A . . . A A . C . G . . A . A A . . . . . A . . . . T . . . . . T C A A G . . . . . . . . TAACTT CATCA A TT . A G TGT AACT . . . . . T . . . . GA T TATT . A . C G . . . . T T AAATTTAGT . . CT . . . AA . . GAGCAAATTTACTGATTTAT T . AAAAA . . . . . . . T T TAG . . . . TAACCTA . . TATTA T . G . G . . C .
blockSeqs : . . . . A . TT . A . . . . . AA T TGT . G . A G . . . . C . . . . TT . . . AA . . ATATAAATTAAAATGATTAA T . ACTT . . . . . . . . . TA . . . . TAATT . . CTTA G . . . . . . T .
blockSeqs : ACT . . . . . . . . . . . . . . TT . . . CA . . ATAAAATTTAATGATTAA T . ATTT . . . . . . . . . . . . . C
blockSeqs : . . . AA . . AAGTGA . . ATTT . . . . . .
blockSeqs : . . . . .
blockSeqCons : TAACTT ATCA*** TT ** A* TGT* ACT**** AA** AAATTTAGT*** *** ****** AA** ATAAAATTTANTGATTTTGTAA******************* ATTTTT*********** T** TAGA **** TAACCTT******** TTATA****** G* G* G**
originalCons : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-AATCA-CACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-ACAAAC---TACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----A--GACA--TCATCACA-AGACTT-TTA-ATTGA-G-ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTATTCAATGTGACAA--ATTTAGT-CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAA--TTC--A----AGT--ATA--TA---AATTTACATG--A-TT----------AA-C-T-GA-TAAAGAAAA------ATTT-------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAA-TGCCTTGGGTAGACT---T-CTTCAC-GATAA----TTTACC-----TA-AC--CTATTTC-A--TT--TT--A----TCTTGG-TCGAATT-----------------------TT-GAGC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGT
finalCons : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAA--GCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGTC--ATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTAATCA---CACAAATTTTG--TCATTCAAATATTTAA-CAGATTGGAAATGT-ACAACT----ACAACA---CGAAAGATGGAAAGCTTG-TCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----A--GACA--TCATCACA-AGACTT-TTA-ATTGAAA--CTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGATG--AAATTCACTTCCTTATTCAATGTGACAAATTTAGT---CAACA---AAGAGA-GAAACTTATTTA------GA-C-----TTGTAAA--TTC--A----AGTATAAAATTTANTGATTTTGTAA-------------------C-T-GA-TAAAGAAAAATTTTT-----------TTT-----TTG-ATTT--TA-A----AT-----TGTG----AAGATATTGAAATCATGAAT--CCTTGGGTAGACT---T-CTTCAC-GATAA----TTTACCTAACCTT--------TTTC-A--TTTTATA------TCTTGG-TCGAATT-----------------------TTG-AGC--AATG--AT-GACTCCT---TCC-C-TCTTGTGCCCAATGT
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAGAAGTCTCATCTGCTATTAGTTCATTGAAAACTGGAAAAGCAAAGGGTCTGGATCTAATATCTATTTTCATTTTTTGTCTCTCAAACACATACTATCCAGAAGCATGGGCAAACGGGTATATATCCCCCTTTTTTAAAATCAGGGAACCCAGTTGACCCCAATAACTAAAGAGGAATTGCCATAACTAGTAAT
Unaligned ( gi|12 ): TCTTGTGCAATACAATTTTGTCTTTTTTTCAAAGTTTGTCATTTAGTTCCACTTTATGTTAAGCTTTCTTTTCTTAATGTATGTTTATGCTCCTTTTTGCCCTGCTTGGGCTCTGAATTAGCAATAAAATCTATTT
Unaligned ( gi|14 ): AAATATGAAATTGATACAATATGATGCCCAGTGATAATCCTACTATTGTGCAATACAATTTTGTCCTTTTCTGAATGTGTGTCATTATGTCT
Unaligned ( gi|17 ): GCTCTGAATTAGCAATAAATCTATTCTATTCATAG
Alignments
lowQualScore : 1 1 1 1 1 1 1 11 11 11 1 1 1 1 1 1 1 1 1 1 11 2222 1 1 11 11 1 111 1 11 1111 22222222 11 1 1 444444444444444 111 1 222 4444444 11 44444444 11 11 1 1 111 111111 1111111 111 1 222222222 111 11 111111 11111 66666666666666666666666666666666666666666666666 333333333333333333333333333333 2222 222 111 2222 22222222222 22222222 1 11 11 111 11
lowQualScore : 5 5 5 22 3 3 0 0 0 0 3 1 2 2 33 22 33 0 3 0 1 3 0 0 0 0 0 3 0 0 0 33 3 3 2 1111 0 8 5 0 0 3 33 3 2 22 2 0 666 2 0 0 0 33 8888 888888 88888888 0 11 11 0 6 0 000000000000000 444 0 8 5 000 7 3333333 33 3 22222222 33 33 99 0 3 0 444 999999 4444444 99 1 111 2 2 2 6 3 6 99 1 7 000000000 111 6 44 666666 5 44444 22 77777777777777777777777777777777777777777777777 5 5 999999999999999999999999999999 66 5 5 0 0000 3 444 111 8 444 8 8888 88 99999999999 77777777 0 999 0 33 33 111 6 77
lowQualScore : . . . .. . . . . . . . . . . .. .. .. . . . . . . . . . . . . . . .. . . . .... . . . . . . .. . . .. . . ... . . . . .. .... ...... ........ . .. .. . . . ............... ... . . . ... . ....... .. . ........ .. .. .. . . . ... ...... ....... .. . ... . . . . . . .. . . ......... ... . .. ...... . ..... .. ............................................... . . .............................. .. . . . .... . ... ... . ... . .... .. ........... ........ . ... . .. .. ... . ..
lowQualScore : 0 5 5 00 3 2 2 0 0 0 2 0 5 5 88 55 88 0 2 0 0 2 0 0 0 0 0 2 0 0 0 88 2 2 5 2222 0 0 6 0 8 2 88 2 5 55 5 0 222 5 8 8 0 88 8888 000000 66666666 8 66 00 8 0 0 222222222222222 000 8 0 5 555 3 3333333 88 2 00000000 55 88 22 0 2 0 555 000000 3333333 22 7 777 5 5 5 7 3 7 22 0 3 333333333 777 7 00 444444 7 33333 77 99999999999999999999999999999999999999999999999 7 7 777777777777777777777777777777 99 0 0 1 8888 2 888 666 0 000 0 0000 88 44444444444 66666666 8 444 6 33 33 777 7 55
consensus : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGT--CATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-A-ATC-ACACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGT-ACAA-AC---TACAACA---CGAAAGATGGAAAGCTT-GTCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----A--GACA--TCATCACA-AGACTT-TTA-ATTGAA--ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGA--TGAAATTCACTTCCTTATTCAATGTGACAA--ATTTAG-TCAACA---AAGAG-AGAAACTTATTTA------GA-C-----TTGTAAATTC--A----AGT-A-TN-AA----ATT-TANT--GATT------TA-A-CT-G-ATAAAGAAAAATT-----TTT----T---TT---TTG---ATTT--TA-A-ATTGTG----AAGATATTGAAATCATGAA-T-CCTTGGGTAGAC-TT---CTTCA-CGATAA----TTTA-CCTA-ACC--TTT--TTCATTTT----AT-ATCTTGG-TCGAATTTT-GAGCAATG-ATGACTCCT---TCC-CTCTTGTGCCCAATGT
Reference ( family-1839 ) : AATGCTCTTTGATCACATTATTAAACCAATCTNNTATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATANTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAANTTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGT--CATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCT--A-ATC-ACACAAATTTTG--TCATTCAAATATTTA-ACAGATTGGAAATGT-AC-A-AC---TACAACA---CGAAAGATGGAAAGCTT-GTCACATCCTTATTTTTAAAATCAAACTTGCTTGTTGGGAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----A--GACA--TCATCACA-AGACTT-TTA-ATTGAA--ACTGG---T--AGATT-ATT--ACAA--TACTCCCAGGAATG---AAAGAATTTGCAAAAATTGCACAGAAAATGTAGT-G-A-AGA--TGAAATTCACTTCCTTATTCAATGTGACAA--ATTTAG-TCAACA---AAGAG-AGAAACTTATTTA------GA-C-----TTGTAAATTC--A----AGT-A-TA-AA----ATT-TANT--GATTT---TGTA-A-CT-G-ATAAAGAAAAATT-----TTT----T---TT---TTG---ATTT--TA-A-ATTGTG----AAGATATTGAAATCATGAA-T-CCTTGGGTAGAC-TT---CTTCA-CGATAA----TTTA-CCTA-ACC--TTT--TTCATTTT----AT-ATCTTGG-TCGAATTTT-GAGCAATG-ATGACTCCT---TCC-CTCTTGTGCCCAATGT
gi|1 : AATG-TCTTTGATCACAT-ATTAAACCAATCTATTATATGG-TTCTGAAA---TACGGGATACT-GAATATTAAGAACACTGAA-CTCAATCAACT-GATAATATTCAAATAGAAGATGAGTACA-AACCAGTTAA--ATGTGGTAATTAT-T-CAT-CAAATTTTTGC------------------------A-AATCTTTC-AACCCATGCTTCTCCTCTT-GAGTTGGGTAAAAC-ACCGACTACATTATGATACAGTCA--AGAGCA-------------TCGTTGATTAGAAGAATAGTCTTAT-TGGA-TTTCCACTTTTAAAGGATG-CTTTCTAAGTAGGAAGC-TCTGCACCATAACCACACAACTT--C-T-GTATTCAGTCCAAATTGGCAAC-TGTGTAATATTTCTAATGCCAAGGG-AA--AGCTCGATGTCTCTGGGAAAGA--------------------T-ACACAA----TGATTCATTCAAATATTCA-TCA-ATTGGAAA--T-AC-A-------ATAACT---TGAAAG-TGGAAAATTT-
gi|10 : ggggatgtataccctatcttttaagattcctacaattcggggcccagctgaccccaattaactacagaggggaattatcataactcgtatctgagtaaactatttttttaaaatgccattctgaataataatagattagataaattttagaacaaatacaatgtcatccttgctagcacaaattggttttccaaacatgcttgacaactgcagtgatcaactgtttcattcttaagtctagttaagaaatatgtgtagcacaaaagcggagtagactattgtttgatgtcattgttccaaaaggcttttgatagtgtaatacattgtagagctagaattgaaatactctgctaaatatagttctagcttatgaaacaactaaatatgtatgttgaaaagtggaaaccctgcagtttaaattaaatgctcttcacttcttattccgtattaatttatggtgtacgtcaaggttaaatctcagttcctggtcttttcaaaaatttctccaatgattacatgtaccaaaattcagagaaagctttacgatgagttaaaattacagtatggaaaaaattgcggcctaatgatgcagatgtatattttacatctccagaaggctcccaaaagaatttaactgacagaaaatactgtaagattgggaattaagttaacttgcacaaaacaaaataatttacatttaattaaggctgaacagcccataaaacataaatttctttggtaaaaaacccgaaatgatgtggatcaaactatatacttgggatattatgttttatgcatctgaaacattgttttatggcaaaatcctctcaaacatagttcaaattaagacgatatttttttagttttaaaccaggaattaaagaacatgtatTT-GAGCAATGTATGACTCCT---TCC-CTCTTGT--CCAATa
gi|11 : cgaaaAAAT-GTACAGGAAATTTATTTG-A-AGA--TGAGATTCACTTCCTTATTCAATTTAACAAGCATATAA-TCATTGTTTAATGG-AGAAAC-CATTTAAAACAGAA-C-----ATGTGA------A----AG----TG-AA----GTT-TACT--GATT------TA-T-CT-G-ATAAAGAAAA---------CT----T---TT---TTGA--ATTT--TA-A-ATTacagttttgtctttttttcaaagtttgtcattatgtctcactttatgttagtttcttttcttaatgtatgttatgctccttttgccctgcttgggctctgaattagcaataaaatctatttta
gi|13 : t--GTCTCTGGGAAAGAG------CAGTTAT--A-AC-------AATGATA--TCATTCAAATATTTA-ACAGATTGGAAATGT-AC-ATACGTATATAACAACTTGAAAGATAGGAAGTTT-GT
gi|15 : ttTATTTA------AA-T-----CTGTACCTTCGAA----AGTGA-GC-AA----ATT-TACT--GATTT------A-T-CT-G-ATAAAGAAAAA----------AAAAT---GT---TGG---ATTT--CA-A-ATTG
gi|16 : CTTG---T--AGAT--GTT--ACAG--TATTCCCTGAAATG---AAAGAATTTGCAAAAAc
gi|2 : taatggcgTATATGGGTTCTGAAAATGTGCACACTACTTAAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAA-ATTGTTACACAA--AGCTAACGGTGTG--AGTTACCTACATTCAAAATTTTGCAAATATATATTAGGAATAAA-AAAACAATCTGTC-AA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCCAAAAAGCATATTCAAATACTG-CATA-GTTAGAA----AATC-TATCTGAA-TTTCCACGTTTAAAGGATGCCTTTCTATACAGTAAGTATTTGCACCATAACCATAAAACGTCGCATGGTATT--CTCC-AGTTGTAAAACTCTGTAATATTTTTAATGCTAATGATAACCATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCTA-A-ATCAACACAAATTTTG--TCATTCAAATATTTATACAGATTGGAAATGTGACAA-AC---TACAACA---CGAAAGATGGAAAGCTTGGTCACATCCTTATTTTTAAAATCAAAC-TGCTTGTTGGAAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAGATTCAG-----AACGACA--TCATCACA-CAACTTCTTAGATTGGA--GCTGG---CTGAGATT-G-T--ACAC--TACCCCCAGGAATG---AAAGAATTTGC-AAAATTGCACACAAAATGTAGT-G-A-AGATGTGAAATTCACTTCCTTA-TCAATGTGACAA--ATTTAGTTCAACA---AAGAGAAGAAAC-TATTTA------GA-C-----TTGTAAATTC--A----AGT-A-TA-AA----ATT-TAAT--GAT-------TA-ACCT-GAATAAAGAAAAGTTTGTTGTTT----T---TT---TTAT--ATTT--TA-A-A-TGTG----AAGATATTGAAATCATGAA-T-GCTTTGGGATACTTT---CTTCATTGATAAAT--TTTA-CCTA-ACC---AT--TTCATTT------T-ATCTT-G-TCGAA--TT-GAACAATG-ATACTTCCT---TCC-CTCTTGTGCCCAATGT
gi|3 : AATGCTCTTTGATC-CATTATTAAACCAATTTTATATATGG-TTCTGAAAATGTGCGCAATACT-AAATACTAAGAGCACT-AA-CTAAATCAAGTAGATATTGTTCAAATAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAA-AAAA-AATCTGTCAAA-TCATGCTTCT-CTCTCAGAACTGGGT-AGAC-TCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCATAGGTTAGAA----AATC-TATCTGAATTTTCCAC-TTTAAAGGATG-CTTTC-ATACAGTAAGTATTTGCACCATAACCATAAAACGT--CATGGTATTC-CTCC-AGTTGTAAAA-TCTGTAATATTTTTAATGCTAATGA-AA--ATATTA--GTCTCTGGGAAAGAGTAACTTCAGCTCT--ACATC-ACACAAATTTTG--TCA-TCAAATATTTATACAGATTGGAAATGT-ACAA-AC---TACAACA---CGAAAGATGGAAAGCTT-GTCACATCCTTATTTTTAAAATCAAACTTGCTTGT---GAAGAATATCTTAATTCAATTAATAATTATAA-------TATAGAAGATCAATT--TGTAG-TTCAG--------GACA--TCATCACACAGACTT-TTA-ATTGAG--ACTGG---T--AGATT-ATT--ACAA--TACCCCCAGGAATG---AAAGAATTTGCAAAAATTGCACACAAAATGTAGT-G-A-AGA--TGAAATTCACTTCCTTA-TCAATGTGACAA--ATTTAG-TCAACA---AAGAG-AGAAACTTATTTA------GA-C-----TTGTAAATTC--A----AGT-A-TATAA----ATTAAAAT--GAT-------TA-A-CT-G-ATAAAGAAAAGTTGTTG-TTT----T---TT---TTT---ATTT--TA-A-ATTGTG----AAGATATTGAAATCATGAA-T-CTTTGGGT--AC-TT---CTTCA-TGATAA----TTTA-CCTA-ACC--TAT--TTCATTCT-----T-ATCTTGG-TCGAA-TTT-GAACAATG-ATGACTCCT---TCC-CTCTTGTGCCCAATGTaatcgactccttcccttcttgtc
gi|4 : TCTGAA-TTTCCACTTTTAAAGGATGCCTTTCTA
gi|4 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnnATATGGGCAACACT-AAATACTAAGAGCACT-AAACTAAATCAAGTAGATAATGTTCAAACAGAAGATTGTTACACAA--AGCTAA-GGTGTG--AGTTAC-TACAT-CAAAAATTTGCAAATATATATTAGGAATAAATAAAA-AATCTGTC-AA-TCATGATTCT-CTCTCAGAACTGGGT-AGACATCC-ACTGCATTATGATATAGTCC--AAAGCATATTCAAATACTGTCATAGGTTAGAC----AATC-TAGCTAAA-TGTCCACTTTTAAAGGATGCCTTTCTATGCAGTAAGTATTTGCACCATAACCATAAAACGT--CATGGTATTC-CT-C-AGTTGTAA-----------------------AATGA-AA--ATAT----GTCTCTTGGAAAGAGTAACTTCAGCTCTACA-ATC-ACAAAAATTTTG--TCATTCAAATATTTA-ACA------------------------ACAACA---TGAAAGATGGAAAACTT-GTCACATACTTAATTTTAAAATCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatgggcaacactaaatactaagagcactaaactaaatcaagtagataatgttcaaacagaagattgttacacaaagctaaggtgtgagttactacatcaaaaatttgcaaatatatattaggaataaataaaaaatctgtcaatcatgattctctctcagaactgggtagacatccactgcattatgatatagtccaaagcatattcaaatactgtcataggttagacaatctagctaaatgtccacttttaaaggatgcctttctatgcagtaagtatttgcaccataaccataaaacgtcatggtattcctcagttgtaaaatgaaaatatgtctcttggaaagagtaacttcagctctacaatcacaaaaattttgtcattcaaatatttaacaacaacatgaaagatggaaaacttgtcacatacttaattttaaaatca
gi|5 : gtttctgtatgaaaactccgaaattgaatgcgtatcaaactctaaatacttgggcattatgttcaatgcatctggaactttttccatggccaggcnnnnnnnnnnnnnnnnnnnnnnntctgaatttccacttttaaaggatgcctttctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCAGTTA-TAACTACAAAATAAAATATAGAAGATCAATTGGTATAGATTCAG-----A--G-TA--TCATCACA--GACTT-TTA-ATTGAA--ACTGG---T--AGAT--ACT--GCAA--TATTCACAGGAATG---AAAAAA----AAAAAATTGCA-----AATGTAGT-GCA-AGA--TGAAATTCACTTCTTTATTCAATGAGGCAA--ATTTAG-TCAACA---AAGAG-AGAAA-TTATTTA------GA-C-----TTGTGCATTT-------------TC-AA----A----AGT--GA------------------ACAAAGAAAAA-------CTT----T---TT---TTG---ATTT--TA-A-ATTGTG----AAGATGTCGAAATCATGAACT-CCTTGGGTAGAT-TT---CTTCA-CGATAAGCTGTTT----TA-A----TTC--TGCATTTT----AA-ATGTTAGCTTGAATTCT--AGGAAC--ATGACCCCT---TCC-TTGTTGT--CCAAT
gi|6 : atacctatctttacacatgcT-ATT--ACAA--T-TTCCCAGGAATG---AA-GAATTTGCAAAAAATGCACAGAAAAT--AGT-GGA-AGA--TGAAATT-ACTTCCTTATTCAATATAACAG-------------CA---AAGAG-AAAA--TTATTTA------GG-C-----TTGTACATTC--A----A---A-TG-AAT---ATT-TACTT-GATTTACATGTA-AACT-G-ATAAAG---AATT-----TTT----TGTGTG---TGG---ATTT--T--A-ATTGTGTAATAAGATA--GAAATTAAGAA---CCTTGGGTAGAT-TT---CTTCA-CGATAA----TTTACCCTA-GTCAATTTAATTCACTTTTTAAAT-GTC-TAT-TTGAATTTT--AGCAAT--ATGACCCCT---TCCTTTCTTAT--CCAATGccaattttgtcctaatcttaatacatgtacttgtctctttctctcatttaattcctgttagctctgtctttttgttctctttcctggtgtatgctgtgcactttaaatgccctgtttaggctctgaattagagaataacatctattct
gi|7 : gGATCAGTT--TGTAGATTCAGCATTGA--GAAAACTCATTACA-AGACTT-T-A-ATTAACGTACCGGCGAT--AGTTTCACTTAACAGAGTGCGCGCAAGGATGTGGAAAGCATTTCAAAAAATTGCGAAGAAAATGTAGA-G-ACAGA--TAAAAT-CACTTC-TTGT-CG--GTGAC------------CAAGA---GCGTG-AGAGAGTGATTTA------GAGCGTGAATTGTAAATTC--AGAAGAGT-AATA-GAGCTAATG-TAATTCGAGTG---TGGAGA-CTAG-ATAAAAAGAAATT-----TTT----T---TTAACTTGGTAATGTGATA-AGAGTGTGT---GAGATATTGAGAcatttccctaattttcagtgatgtgtcatatatgtactcatttatcgtaccattgtagatgtcttttcttctttctttttt
gi|8 : tagaagcaatgTG---ATTT--TGGA-ATTGTG----A-GATATTGAAAT-ATGAAATGCCTTGGGTAG-C-TTTGTCTTCA-TGATAA----TTTA-CCTAGACCG-CTT--TTCAATTT----ATTATCTTGG-TCGAATTTTGGAGCGATG-TTGACTCCTTTGTCC-CTCTTGTGC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AAGAAGTCTCATCTGCTATTAGTTCATTGAAAACTGGAAAAGCAAAGGGTCTGGATCTAATATCTATTTTCATTTTTTGTCTCTCAAACACATACTATCCAGAAGCATGGGCAAACGGGTATATATCCCCCTTTTTTAAAATCAGGGAACCCAGTTGACCCCAATAACTAAAGAGGAATTGCCATAACTAGTAAT
Unaligned ( gi|12 ): TCTTGTGCAATACAATTTTGTCTTTTTTTCAAAGTTTGTCATTTAGTTCCACTTTATGTTAAGCTTTCTTTTCTTAATGTATGTTTATGCTCCTTTTTGCCCTGCTTGGGCTCTGAATTAGCAATAAAATCTATTT
Unaligned ( gi|14 ): AAATATGAAATTGATACAATATGATGCCCAGTGATAATCCTACTATTGTGCAATACAATTTTGTCCTTTTCTGAATGTGTGTCATTATGTCT
Unaligned ( gi|17 ): GCTCTGAATTAGCAATAAATCTATTCTATTCATAG