lowQualScore : 111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 2222 22222222222 111111111111111 1111 111 1 1 3333333333333333 1 44444444444444444444 22222 11111 111 22 11 22 1 22222 11 666666666666666666666666666666666666666 22222222222222222222222222222222222222222222222222222222222222222222222222222 11111111 11111 111111 222 2 1 1111 1 222222222 1 111 111 22 11111 11 11 22222 1111 22 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111111 11 3333 22 11 333 222 444444444444444444444444444444444444444444444444444444444444444444444444444444444 55555555 11 44
lowQualScore : 9 0 0 0 3 66 8 0 3 1 1 4 8 0 1 9 2 22 2 9999 88888888888 777777777777777 8 5 4444 000 1 999999 0 0 77 9999999999999999 5 5 1 0 3 5 77 00000000000000000000 5 8 0 4 44 4 777 44 777 8 22222 4 4 8 5 1 22222 5 3 777 88 111 1 5 77 22 11 1 8 8 22 4 0 11111 33 666666666666666666666666666666666666666 77777777777777777777777777777777777777777777777777777777777777777777777777777 5 55555555 44444 5 5 777777 5 000 3 2 1 3 4 7777 4 0 333333333 7 9 1 9 000 999 0 00 5 888 0 1 77 77 1 11111 5 5 33 1 66 5 44444 7777 2222 44 5 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 77 8888888 5 77 3 99 99 2 4 5555 6 77 22 99 1 9 111 7 333 777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 11111111 22 66
lowQualScore : . . . . . .. . . . . . . . . . . . .. . .... ........... ............... . . .... ... . ...... . . .. ................ . . . . . . .. .................... . . . . .. . ... .. ... . ..... . . . . . ..... . . ... .. ... . . .. .. .. . . . .. . . ..... .. ....................................... ............................................................................. . ........ ..... . . ...... . ... . . . . . .... . . ......... . . . . ... ... . .. . ... . . .. .. . ..... . . .. . .. . ..... .... .... .. . ........................................................................................................................................... .. ....... . .. . .. .. . . .... . .. .. .. . . ... . ... ................................................................................. . ........ .. ..
lowQualScore : 8 0 0 8 0 00 8 2 2 4 8 4 0 0 8 3 8 00 5 2222 88888888888 444444444444444 1 7 7777 000 4 777777 1 1 99 1111111111111111 0 7 4 3 9 7 99 33333333333333333333 0 4 9 4 66 9 444 66 888 3 66666 4 4 7 7 7 11111 7 7 666 11 999 4 7 99 33 33 7 0 0 88 5 8 88888 88 999999999999999999999999999999999999999 55555555555555555555555555555555555555555555555555555555555555555555555555555 7 33333333 33333 7 7 333333 7 111 7 9 7 3 4 3333 3 1 000000000 3 9 4 9 000 111 7 77 7 111 7 1 99 99 9 33333 7 7 66 9 44 7 11111 4444 6666 77 7 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 99 6666666 7 99 7 22 00 0 7 5555 0 33 00 33 0 0 333 3 333 888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 00000000 00 00
consensus : TTAATATTG-TA-GTCTGTTAGNTTNNGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCNCCTCCTTTGGGANGGGATGCCAGGCATATCTGCAAC------T---GCTCTAGAGATCAATGTAA--TCCCGCAAAAGGATGCCCAG-AAAAT---GGCA---AGAAAGAGTGTTTA-TATAGATATAT--ATGTCATTGA-AATT----CAACTTAGA-GACA-GCATGGAATGTCGCA-CAA--AT---A-----TCTT--CTAGAAAATNATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATTTAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TAAATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGCAAAT-GG-ATGTCAAGGTGTGA-AGTTTTATCGTTACA-AA--TTTCTTCTAT-ATG-ATG-G-GTAACAGA--GAAATTAA-------CGTACTTTAC---------A---TTTTGC---AT--AA----A-ATTT-T--T----TA-T-CAG--AT-TT--GAATA---A----AAA-T----A---AAAC-----AT-ACGAT-GGCGTGTT-AAAG-TATNTTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTC--CAC-A-ATCCAGGATGACCGNTGATATTTCC---GT--GTCACTGAGA-CA-TG--ATGCTGACACTAAC--AG--ACGTTTTCCTCC-AC--GA-G-ACACT--TTATCTGCTCTAT-CTACG-AC-TCC-AGNCG--C-GCANA-AAGGTAA-AG-A---A--AGTAAAANA-A-A-A---AA--------A--GCC-C--CGTTCGCA-CAGATGAGGG--TA--NANC-TTTACTTCGG-ATCAGC-T--------TAG----T----TA--------A---------CTGCA--ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGCTACAATN-TTTGGAACAGCAT-TTTCGTTAT-N-TGCAA---TATA-A-AA-ATN--TT-AAT--CTTC--CTAACGAAGATNACTNACATNGTATGANTTNTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAA
Reference ( gi|1 ) : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGCAAA------T---GCTCTA----------TAT--TCCTGCAAAAGTATGCCCAG-AAAAT---TGCA---AGACAGAGTGTTTA-TATAGATATAT--ATGTCATTGAAAATT----CAACTTAGA-GACA-GCATAAAATATTGCA-CAA--AT---A-----TTTT--CTAGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATTTTGGTGTCA--CTTGTGA-AGTTAAA-TGTCGGTATCC-AGCATATGG---CGTGGA-ATGCCAGGG-TACATGC--TCG-TGT--GACGAGGAGAAGTGTCGTCCTGCAAAT-GG-ATGTCAAGGTGTGA-CGTTTCATTATTCCA-AA--TTTCTTCTATGATGCATGCACGTAACGGA--GAAATTGA-------CGTACTTTAC---------A---T--------AT--AA----G---------T----CA-T-CA------T---GAATA---A----AAA-T----A---AAAC-----AT-ACAAT-GACATGAT-AAAG-TATATTTCG-AAGGTAATGGTATGGACGCAGTAACAACAGCTGCTC--CGA-A-GTCCACGATGACCACTGACATCTCC---GT--ATCACTGAGC-CA-TG--ATGCTGACATTAAC--AG--ACGTTTTCCTTC-AC--GA-G-ACACT--TTATCTGCTGCAT-CTACT-AT-TCC-AGTCA--T-GCTTA-AAGGTAACAGCATCCACCATTAAAAGA-A-A-A---AA--------A--GCC-T--CGTTCACA-CAGACGAGAG--TA--TATC-TTTACTCTGG-ATCAGC-T--------TAA----T----TA--------A---------TTGCA--ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGGATGTAACGAA--CTACAGTGATTTGGAACAATATCTTTTGCTAT-T-TGCAA---TATACAGAA-ATC--TT-AAT--CTTC--CTAA--AACATT-CTC-CGTCGCATAAGTTATA---ATCAATGATCTTC-CGAGTAATCTTACTTAAATGTGTATTTCTAAATAGA-AGATAA
gi|2 : TTAAAATTGGTAAGTCTGGTAGCTTGGGTAT-TTTGG---GACTGTTTACAGCAATGTCGAT-TCCCCTCGTTTGGGAGAGGATGCCAGGCA-ATCTGCAAC------T---GCTCTAGAGATCAATGTAA--TCACGCAAACGGATGTCCAG-AAAAT---GGTA---AGAATGCGTG---ACTATAAATATAT--ATG--ATTAAGAAAT----GAACTTGGA-GACA-GCATGGAATGTTGTT-CAA--AT---A-----TTAT--CT--------------TGTTT-ACGTTATAGA--TTGTCC-CCCAGGCT---ATGTAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGG---CGTGGA-ATGTCAGGA-TACATGC--TTG-TGT--GAAAAGGAGAAGTGTCATCCTGGAAAT-GG-ATGTCAAGGTAAGA-AGTTTTATTATTACA-AA--GTTCTTCTA-------------------G--GGAATTAA-------AATACTTCAC---------ATCTT--------GT--AAT---A---------T----TA-A-CATTTAT-T---TAATA---GAAACAAA-T----A---AAACATACGAT-ACAAT-GACTTGTG-AAAG-TA-ATTTTGAAAGATATTGGTATGGACGTGGTAACAACACCTGATC--CAC-T-ATCCCGGATGACCATTGGTTTAACC---GT--GTCACTTAGG-CA-TA--TTGCTGAAAATAGC--AA--ACGTTTTTCTTCTACTAGA-G-ACACT--TTATCTACTCTAT-CTACA-AC-TCC-AGACG--T-ACAGA-AAGGTAACG------------AAAAGA-A-A-ATACAATGTGTACTA--GCA-CAACGTTTAC--CA-ATGAGAG--TG--AACT-TTTCC------AT-AAC-T--------GTA----T----T---------A---------CTGCA--AGGT-------AAATTA-A--CATCACAC--TCACACGG--CAAGAATGTTACGTA--CTACAATG----GGAATAATA--TGTTGGCAT-CATGCAATATTATACATAATATG--TTGAAT--CTAC----AA--AA---G-CTG-TATAATATGAGTTCTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAA
gi|7 : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGCAAA------T---GCTCTA----------TAT--TCCTGCAAAAGTATGCCCAG-AAAAT---TGCA---AGACAGAGTGTTTA-TATAGATATAT--ATGTCATTGAAAATT----CAACTTAGA-GACA-GCATAAAATATTGCA-CAA--AT---A-----TTTT--CTAGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATTTTGGTGTCA--CTTGTGA-AGTTAAA-TG
gi|5 : tcttgtaataaaataaacatccacttcaccatcttgatgaagtagattagcatataataacatatatagtttatgattgtatgtagctgttttattaccaagaaaataatggggggggggggagtgcaaagtggacatcttcgaccatagtagttataaaatataattcatttatttgtgttgacaggccttgcagaagttgcaattggttacagatgggagagaaggatacacaacacagggttactctgtatgtattcggaatatgaaaatgacaatatttgtatatctattaatgaaattgttttgtgtaaaaagattcaaataattattcacaggcatatctttttgtcggcatagtgttgccggtaaatgtggcTTAA-ATCG-TA-GCCTGTGAGCTTGGGTATTTTGGGAAAACTTGTAATGAGCTATGTCTATATC-CCTCCTTTGGGAAAGGATGCCAGGCA-ATCTGCAAC------T---GCTCCAGAGATCAATGTAA--TCCTGCAAAAGGATGCCCAG-AAAAT---GGTA---AGAAAGAGT---TA-C-TA--TATGT--ATGT--------ATT----TAGCTTAGA-GAAAAGTATGGAGTGTCGCA-CAA--AACAAA-----TCTT-----GAAAATTATTGGTTGTTT-GC-----AGA--TTGTCC-ACCAGGGT---ATTTAGGTAAAT--CTTGTGA-AGTTAAA-TGCCGATATCC-ATCACATGG---TATGGG-ATGTCAGAA-TAACTGT--GTG-TGT--AAAAAGGAGAAATGTTATCCTACA
gi|6 : cATATTG-TA-GTCTGTCAAATTTTGTATGCTCGGAAAGATTGTGCACAGCAATGTCCTT-TCGCCTCTTTTGGGATGATATATCAGACATAT-TGCAAAATATCGTAGAGATCAA----------TGTAATCCTGCAAAAGTATGCACAG-AAAAT---TGCA---AGACAGAGTGTTTA-TATAGATATAT--ATGTCATTGGAAATT----TAACGTAGA-GACA-GCCTGAAATATTGCA-CAAGGATA--A-----TCTT--C---AAAATGATTGATTGTTT-ACGCTCTAGA--CTGTCC-GCCGGGTT---ATTTTGGTGACT--CCTGTAA-AATTAAA-TGttaaataaacatgtttgaaaatttacgatataaccatgtgacatgcattcgaaaaaaaattaaaataaaccataggatggcgtgttgaagtaatttttgaaggtattgctgtgaaggtggaaacaacaccggcgccacaatccaggatgatcgaaaacatttccgtctcactgagacatgaggcgcatattaacagacgtttacctccaagagacacctttcctgcttcatctacaactccattcacacataaaggtaaatagtacgaaatacaatgccctgttgacaaagatgaaggtagacttttactttggcataacttagtattctaactgtattattgccatgaaaattgatattgtgctcacacggcaagaat
gi|3 : tgttataaaataaacacctacttcactattctaatgaagtatattagtatatattaacatttatagtttataattgcatgtagatgttttattaccaagacattagtgagtgcaaagtggatacttcgaccacattaacatagtaatatattcattatatttgtgttcacaggccttccaatggttacagatgggatagaaacaacgacaaatgtctccgtatgtactggaatatgaaaatgaaaagattttttttatatccatgaatggtttcttgattttaatgtgaaaataaccacaaattttgttttgttaaaaatattcaaatatatcacggcatatcttttgtcggcataatttgaggtaaaatatggcttGATTGTGCTTATCAATGTCCCT-TCCCCTCCTATGGAAAGGAATGCCA-ACTCGTGTGTAAC------T---GTTCTAAAGGCCAATGTAA--CCATGTAAAAGGATGCTCAA-AAAGT---GGTA---AGAGAGA----TTG-TATAGGTAAATTAAT-TAATTAATGATTGATACAACC---ATGGCT-GTTTGATATACTTTA-AAA--ATTCTA-----TTTTATTTAAAAAAAAAT--ATT-TTT-ACATTCAAGT--ATGCCC-TCCGGGTT---ATTCAGATGACT--TTTGTGA-ATTTGAA-TGCCGTTATCC-AAATTTTGG---TATTGG-ATGTCAGAA-TGAATGC--TTG-TGT--GACAAAGAGAAGTGTGATCCTGCAAAT-GG-ATGCCAAGGTGTGA-GGTTTTATTGATACA-AA--TTCCCTCTCT------TGTACGTAACAGA--GAAATAAA-------T-TACTTTACAACGTAACAA---T--------AT--AA----AGATTTGT--T----TA-A-CAG-----T---GAGTC---A----AAATT----A---AAGC-----AT-ATAGC-GATATTCT-AAAGCTAT-TTTCA-ATCGTATAGGAATGGAAATGGTGACAA---CTGCTC--TAC-A-ATCCAGGACGACCATTGATATCTCC---GT--GTCACTCAAG-CA-TG--ATGCTGACACTAAC--AG--AAGTTTTCTTCC-AC--CC-G-ACATT--TTCTCTGCTCTTT-CTACG-AC-TAC-AGACA--T-GCAGA-AAGGTAG-GGCA---AACAATGACCCA-ATG-A---AA--------T--GCCAT--C-TTCGTA-TGAAT-AGGC--TT--TAAA-TTTACTTCAG-AGCACT-T--------TAA----T----TG--------A----------TACA--AAGT-------CAATTT-A--TGCTGTGC--TCACTCGGAACAAG
gi|10 : tggatactttgggattTGGGAGAGGATGCCATGTA-ATCTGCAAC------T---GCACTAGAAATCATTGTAA--TCCCACAAAAGGATGCCCTG-AAAATGGTTACATGTAGAATGAGTGACTA-TA---A-ATAT--ATGT----GA-------------TTAAG-GACA-ACGTGGGATGTTGCA-CGA--AG---A-----TTAT--CTTGAAAATGATTGGTTGTTT-ACGTTCTAAA--TTGTCC-CCCAGGCT---ATATAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGT---CGTAGA-ATGCAAGGG-CGTTTGT--TCA-TGT--GAAAAAGAAAAGTGTGATCCTGCAAAT-GG-ATGTCGAGGTGTGA-AGTTT-ATCGT---A-AACTTTTATTCTATTATGCATG
gi|4 : --TCCTGCAAAAGGATGCCCAGGAAAAT---GGTA---AGA-AAAGAGTTAC-TATA--TGT-C--ATGTCATT------------AGCT-AGA-GAAAAGTATGGAGTGTCGCAACAA--AA---AACAAATCTT--G-AAAAAATTAT-GGTTGTT---CGCAA-AGACTTTGTCCACCCAAGCTCGGATTCTAG-GTAAATCTTGTGA-AGTTAAACTG-CGATATCC-ATCACATGGATAC-TGGG-ATGTCAGAACTAACTGT--GTGTTGT--AAAAAGGAGAAAT-TTATCCTACAtg
gi|14 : tcaatgtaTTGTTTTA---TCAAGA--ATGTCT-ACCAGGAT---ACACAGGGACCA--ACTGTGA-ACTTCAA-TGTCGGTATCCAAGC-TTTGG---GGTCGG-CTGTCAACA-GAAATGCAATTG-TAC--GA--AAGACAATTGCCATGTT-CAAACGGG-ATGttaaataaacatgtttgagaatttacgatataaccatgtggaccatgcattcgaaaaaaaattacaacttaaacattaggatcggcgtgttgagtaatttttgagtattgctgtgaagttgaaacaacaccggcgccacacttcagatgatcgaaaacatttccgctcactgagaacatgttagggcgatattaacagggacgtttacctccaagagacactctttcctgcttcatcctaccaactccgattcacagcataaaggtaaagatagtacgaaatacaattgccctgttgacaaagatggaaggttagattttactttgcagtaacttagtattctaactgtattatgccattgaaaaatttgatattgtgctcacacgcaagaatgtgatataggctataatttttggaacagcatttttcgttatattgcatataaaaacagttaataacctcatctaacgaagattacttacattgtatatttata
gi|8 : aaaatgTGTTT-ATATTCTAGA--ATGTCC-CCCACGCT----TTTAGGTA-CT--CTTGTGCCAGTTAAA-TGCCGGC--CC-AGCATATGG---TGTGGATCTGTCAGGG-TACATG---TCG-TGTTGAAAAAGGAGAAGTGTGATC-TGCAAAT-GGGAT-TCAAGGTGTGAATGTTTTATGATTGAACAG--TTTCTTCTATGATGGATGAGAGTAACAGAAGAAAATTGATAAACTGTGTACTTTAC---------A---TTTTGC---ATTCAA----A---------C----CATT-CAG-----TTAAGAATAAATA----AGA-T----G---AAAT-----AT-ACAAT-GAC-TGTT-AAAG-TGTATTTTGAAAGGTATTGGT-TTGACGTGGTAACAACACTTGCTC--CGA-ACATCCAGAATGACCCATAATAT-TCC---GT--CTCACTGAGA-CAGTA--AT-CTGACACTAACAGAG--ACGTT---CTT--AC--GA-GAAGACT--TCATCTGCTCTAT-CTAC--ATCTCC-AGCTG--T-GCATA-AAGGTAA-A-----CAC-----AAAGA-A-A-AAG-AA--------A--GCC-T--CATTTACAGCAGATGAGGT--TA---AAC-ATTATTTCGGCATCAGTAT--------TTG----T----T---------A---------TTGCA--ATGT-------AAATTT-AACGATCAC-CAATCACACGGC-CAGGGATGTAcattggtatgggatatatcttacgatttcatttcgtgt
gi|9 : --GAAATTAA-------CTTACTTTAC---------A---TTTTGCAAAAT--AA----ACATTTTTATT----TA-T-TAAAAATTT---AAATA---G----AAA-T----A---AAAC-----AT-ACGAT-GACG-AATAAAAG-T-TGTTTTGAAAGGTATTGGTGTGGACATGGTAACAAGAACTACTC--CAC-G-ATCCAGGATGACGATTGATATTTCTGGGGTGGACTACTGAGA-CA--G--GTCCTGCCACGAAC--AG--AAGTTTTA--TT-AT--GGTG-ACACTGGTAATCTGCTCTA--ATACG-AC-TTC--GTCAACA-GC--AGAAGGTAA-AGAA--AACAAATACAATA-C-A-A---A-------------------CGTTC----CAAA-GATAG--TA--AAACATTTACT-TCG-ATCAGC-T--------TAATATTT----TA--------AACTGTATTGCTGCA--ATGT-------TATTTT-A--TATCGCAC--CC
gi|4 : caagTTTACG--------A---T--------AT--AACCATG---------TGGACCA-TGCA------TTC-GAAAA---A----AAA-TTACAACTTAAAC-----ATTAGGATCGGCGTGTT-GA-G-TAATTTTTG-A--GTATTGCTGTGAA-GTTGAAACAACACCGGCGC--CAC-A-CTTCA-GATGATCGAAAACATTTCC---GC---TCACTGAGAACA-TGTTAGGGCGATATTAAC--AGGGACGTTTACCTCC-AA--GA-G-ACACTC-TTTCCTGCTTCATCCTACCAAC-TCCGATTCA--CAGCATA-AAGGTAA-AG-AT-----AGT--ACGA-A-ATA---CA--------ATTGCC-C--TGTTGACA-AAGATGGAAGGTTA--GAT--TTTACTTTGC-AGTAAC-T--------TAG----TATTCTA--------A---------CTGTATTATGCCATTGAAAAATTTGA--TATTGTGC--TCACAC-G--CAAGAATGTGATATAGGCTATAATT-TTTGGAACAGCATTTTTCGTTATAT-TGC-A---TATA---AA-AACAGTT-AATAACCTCATCTAACGAAGATTACTTACATTGTAT-ATTTATA---
gi|5 : tcaatgtatcctgcaaaaggatgcccaggaaaatggtaagaaaagagttactatatgtcatgtcattagctagagaaaagtatggagtgtcgcaacaaaaaacaaatcttgaaaaaattatggttgttcgcaaagactttgtccacccaagctcggattctaggtaaatcttgtgaagttaaactgcgatatccatcacatggatactgggatgtcagaactaactgtgtgttgtaaaaaggagaaatttatcctacattaaataaacatgtttgagaaAATT---A----AAA-T----A---AACC-----AT-AGGAT-GGCGTGTT-GAAG-TAATTTTTG-AAGGTATTGCTGTGAAGGTGGAAACAACACCGGCGC--CAC-A-ATCCAGGATGATCGAAAACATTTCC---GT--CTCACTGAGA-CA-TG--AGGCGCATATTAAC--AG--ACGTTTACCTCC-AA--GA-G-ACACC--TTTCCTGCTTCAT-CTACA-AC-TCC-ATTCA--C-ACATA-AAGGTAA----AT-----AGTACGAAA-T-A-C---AA--------T--GCC-C--TGTTGACA-AAGATGAAGG--TA--GACT-TTTACTTTGGCAT-AAC-T--------TAG----TATTCTAACTGTATTA---------TTGCC--ATGA-------AAATTG-A--TATTGTGC--TCACACGG--CAAGAAT
gi|11 : cttaaatcgtagcctgtgagcttgggtattttgggaaaacttgtaatgagctatgtctatatccctcctttgggaaaggatgccaggcaatctgcaactgctccagagatcaatgtaatcctgcaaaaggatgcccagaaaatggtaagaaagagttactatatgtatgtatttagcttagagaaaagtatggagtgtcgcacaaaacaaatcttgaaaattattggttgtttgcagattgtccaccagggtatttaggtaaatcttgtgaagttaaatgccgatatccatcacatggtatgggatgtcagaataactgtgtgtgtaaaaaggagaaatgttatcctacattaaataaacatgtttgaaaatttacgatataaccatgtgacatgcattcgaaaaaaAATG---AG---AAA-T----A---AAAC-----AT-ACGAT-GGCGTGTT-AAAG-TA-ATTTTGAAAGGTAATGGAATGGAATCGGTAACAAGAGCTGCTCCACGATA-G---ATGATGGCCATTGCTATTTCC---AT--GCTACCTAGA-CA-TG--CTGCTGACATTAGC--AG--ACGCTTTCCTTC-TA--GA-G-ACAAT--GTATCTCATCTAT-CTACG-AC-TAC-AAACA--T-GTGGA-AAGGTAGAA------------AAAATATA-A-T---AC--------A--ACC-T--C---TGCA-TAAATGATAA--TAAGCAT--TTTCCTC-GA-ATCAGC-TTGGTATTCTAA----T----TCTTTT----A---------TTGCA--ATGT-------AATTTT-A--T
gi|17 : atttatttaacaatTAATTTGGAACAGCATATTTCGTTAT-A-TGCAA---TATAAAACA-GTT--AT-AAC--CTTC--
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TATTCATTGTATTTGTGTTTACAGGCCTTTTAAATGTTGCTATGGTTACAGATGGGATAGAAATACCGAAACATTTCTCCATATGTACTGGAATATGGAAATGAGAATATCAGTGTACACATTAATGATTTCCTAATTTTGATATGATATCATGCGAAAAAAAAAACCCAGTTATTGTTTTAGTTAAAGACCCAAATATATCACTGCACATCTGTGTTCAATACTCAGCAAGGTATGAGGAAAAATGTAGTTCATA
Unaligned ( gi|13 ): ATATTCATGAATGTAATGGATATACAATTCTAATTTTAAGTAGATGAGTAAATATAATGACATCTAAAGTACATGGCTGTATGTAGATGATTTATTGCCAAAACAATTATAAGTGGAAAGAGGCCTGTTCAGCCATATGTCATAGTAAGATTTTATGTTTACAGACCTTTTAAATGTTGCAGTGGTTACAGATGG
Unaligned ( gi|15 ): GTTGCAGTGGTTACAGATGGGATAGAAATACTGAAAAATGTCTCCGTACGTATTTGAATATACAACGAAGAATATTTGTATATTCTTTAACTCTAACATGATATCATG
Unaligned ( gi|16 ): CGATTTTATATATGCTTTTAGGTCTTTCAAATGTTGCAGTGGTTACAAATGGGATAGGGATACTAAACTTTGTACCCGTAAGTA
Alignments
lowQualScore : 1 1 111 33333333333333 1 11111 11111 22222222222222222222 77777777777777777 11 22222222222 99999999999999999999999999999999999999999999 11111111 11111 111 111 1111 333333333333333333333333333333333333 111 1 6666666666666666666666666666666 22222222 1111111 11 11 1 333 222 22 3333333333 11 11 1 11 11 11 333333333 1 222 1 2 2 1
lowQualScore : 6 8 8 1 22 5 0 1 1 2 1 0 4 4 5 5 0 6 0 3 2 5 888 888 1 5 666 5 44 0 11111111111111 66 0 5 0 22222 5 22222 66 77777777777777777777 2 6 4 22 3 555 4 777 4 55 4 4 0 5 0 888 0 5 5 33 999 5 66 1 0 888 5 5 0 5 5 5 888888 99 11111111111111111 3 11 22222222222 44444444444444444444444444444444444444444444 666 888 5 22222222 5 22222 5 3 555 3 1 0 5 2 2 66 2 44 0 888 111 5 5 66 1 66 66 5 2 3 888 5 5 66 0 5 5 66 5 1 7777 1 5 333333333333333333333333333333333333 999 1 88 88 0 999 1 5 222 1 0 4 5 5 3333333333333333333333333333333 55555555 6666666 5 66 1 77 55 1 77 0 000 111 6 0 11 3 0000000000 33 11 0 33 3 33 00 222222222 1 2 1 1 000 3 4 2 5 0 0 2 77 5
lowQualScore : . . . . .. . . . . . . . . . . . . . . . . . ... ... . . ... . .. . .............. .. . . . ..... . ..... .. .................... . . . .. . ... . ... . .. . . . . . ... . . . .. ... . .. . . ... . . . . . . ...... .. ................. . .. ........... ............................................ ... ... . ........ . ..... . . ... . . . . . . .. . .. . ... ... . . .. . .. .. . . . ... . . .. . . . .. . . .... . . .................................... ... . .. .. . ... . . ... . . . . . ............................... ........ ....... . .. . .. .. . .. . ... ... . . .. . .......... .. .. . .. . .. .. ......... . . . . ... . . . . . . . .. .
lowQualScore : 0 0 0 0 00 0 8 0 0 2 0 4 0 1 0 7 7 6 2 6 0 0 888 888 9 0 999 0 66 1 44444444444444 99 0 0 9 66666 0 55555 99 11111111111111111111 8 2 0 11 5 888 0 000 0 55 0 0 2 0 4 888 2 0 0 55 111 0 99 0 2 888 7 7 1 7 7 4 777777 22 11111111111111111 2 00 44444444444 88888888888888888888888888888888888888888888 111 888 0 22222222 0 55555 0 4 999 4 1 2 6 5 5 99 0 11 4 888 444 0 0 99 1 99 99 0 2 4 222 0 0 99 5 0 0 11 0 0 0000 0 0 222222222222222222222222222222222222 111 4 55 44 2 444 4 9 555 4 0 5 0 0 2222222222222222222222222222222 00000000 2222222 0 99 7 99 88 0 55 0 000 000 5 8 00 2 8888888888 88 00 0 88 2 88 33 000000000 0 0 0 0 555 0 0 5 5 0 0 5 00 0
consensus : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNTTCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANA-GAGTG-TTA-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTT--CTAGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAA-GTTTTATCGTT--ACAAA--TTTCTTCTA-TG----ATGCATG--NGTAACAGAG--AAATT----AAC---GTACTTTACATCTT----GCAA-A-T--AAA--ATTTATT---TAACAGA--T-TGAATAA-A---AA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA--A-ANAN-A--NAA------N-GCCC--CGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGC-T-TAG----TATTCTA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAACGAA-ATTGCTN-CGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
Reference ( family-1834 ) : TTAATATTG-TA-GTCTGTTAGNTTNNGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNTTCNCCTCCTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCCGCAAAAGGATGCCCAG-AAAATGG---CA---AGAAA-GAGTGTTTA-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTC----GCA-C-----AA--AT---A-----TCTT--CTAGAAAATNATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TAAATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAA-GTTTTATCGTT--ACAAA--TTTCTTCTA-T-----ATG-ATG--GGTAACAGAG--AAATT----AAC---GTACTTTACATTTT----GCA----T--AAA--ATTT-TT---TATCAGA--TTTGAATAA-A---AA-T----A---AAACAT-ACG-----AT-GGCGTGTTAAAGTATNTTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACAATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-GC-GCANAAAGGTAA-AGAA------AGTAA--A-ANAA-A--AAA------A-GCCC--CGTTCGCA-CAGATG--AGGGTANANC-TTTACTTCGG-ATCAGC-T-TAG----T----TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAACGAAGATNACTNACATNGTATGANTTNTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAA
gi|1 : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTTTCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACA-GAGTGTTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTT--CTAGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TGTCGGTATCC-AGCATATGG---CGTGGA-ATGCCAGGG-TACATGC--TCG-TGT--GACGAGGAGAAGTGTCGTCCTGC---AAAT-GG-ATGTCA-AGGTGTGAC-GTTTCATTATT--CCAAA--TTTCTTCTA-TG----ATGCATGCACGTAACGGAG--AAATT----GAC---GTACTTTACAT---------A----T--AAG--------T---CATCA------TGAATAA-A---AA-T----A---AAACAT-ACA-----AT-GACATGATAAAGTATATTTCG-AAGGTAATGGTATGGACGCAGTAACAACAGCTGCTCC--GAAGTCCACGATGACCACTGACATCTCC---GTA--TCACTGAGC-CA-TG--ATGCTGACATTAACAG--A--CG-TTTTCCTTCAC--GA-GAC-ACT--TTATC-TGCTGCATC-TAC-TATTCC-AGTC-AT-GCTTAAAGGTAACAGCATCCACCATTAA--A-AGAA-A--AAA------A-GCCT--CGTTCACA-CAGACG--AGAGTATATC-TTTACTCTGG-ATCAGC-T-TAA----T----TA--------A---------TTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGGATGTAACGAA--C-TACAGTGATTTGGAACAATA-TCTTTTGCTAT-TTGCAATA-TACA-----GA--AAT-CTT-AAT--CTTC--CTAA--AACATT-CTC-CGTCGCATAAGTTATA---ATCAATGATCTTC-CGAGTAATCTTACTTAAATGTGTATTTCTAAATAGA-AGATAA
gi|10 : TGGGAGAGGATGCCATGTA-ATCTGC-AACTGCACTAGAAATCATTGTAATCCCACAAAAGGATGCCCTG-AAAATGGTTACATGTAGAAT-GAGTGACTA-TA---A-ATATATGT------GA-----------TTAAGGACA-AC-GTGGGATGTT----GCA-C-----GA--AG---A-----TTAT--CTTGAAAATGATTGGTTGTTT-ACGTTCTAAA--TTGTCC-CCCAGGCT---ATA-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGT---CGTAGA-ATGCAAGGG-CGTTTGT--TCA-TGT--GAAAAAGAAAAGTGTGATCCTGC---AAAT-GG-ATGTCG-AGGTGTGAA-G-TTTATCGT-----AAACTTTTATTCTATT-----ATGCATG--
gi|11 : --ATTTATT---TAACA-A--T---AATGAGA---AA-T----A---AAACAT-ACG-----AT-GGCGTGTTAAAGTA-ATTTTGAAAGGTAATGGAATGGAATCGGTAACAAGAGCTGCTCC--ACGATAGATGATGGCCATTGCTATTTCC---ATG--CTACCTAGA-CA-TG--CTGCTGACATTAGCAG--A--CG-CTTTCCTTCTA--GA-GAC-AAT--GTATC-TCATCTATC-TAC-GACTAC-AAAC-AT-GTGGAAAGGTAG-AAAA------AATAT--A-ATAC-A--A-----------CCT--C---TGCA-TAAATG--ATAATAAGCA-TTTTCCTCGA-ATCAGC-T-TGG----TATTCTAATTCTTTTA---------TTGCA--------ATGT-------AATTTT-A--Ttg
gi|14 : GTTGTTTTA---TCAAGA--ATGTCT-ACCAGGAT---ACA-CAGG-GACCAACT-GTGA-ACTTCAA-TGTCGGTATCCAAGC-TTTGG---GGTCGG-CTGTCAACA-GAAATGCAATTG-TAC--GAAA--GACAATTGCCATGTT-C---AAACGGG-ATG-CATTGGTATG-G-GATATATC-TT--AC-GA--TTTC
gi|17 : aaaatTAGGCCTATAAT---TTGGAACAGCA-TATTTCGTTAT-ATGCAATA-T--A-----AAACAGT-TAT-AAC--CTTC--atttcgtgt
gi|2 : gataTTAAAATTGGTAAGTCTGGTAGCTTGGGTAT-TTTGG---GACTGTTTACAGCAATGTCGATTCCCCTCGTTTGGGAGAGGATGCCAGGCA-ATCTGC-AACTGCTCTAGAGATCAATGTAATCACGCAAACGGATGTCCAG-AAAATGG---TA---AGAAT-GCGTG---ACTATAAATATATATG--ATTAAGAAA-TG-AAC--TTGGAGACA-GC-ATGGAATGTT----GTT-C-----AA--AT---A-----TTAT--CT--------------TGTTT-ACGTTATAGA--TTGTCC-CCCAGGCT---ATG-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGG---CGTGGA-ATGTCAGGA-TACATGC--TTG-TGT--GAAAAGGAGAAGTGTCATCCTGG---AAAT-GG-ATGTCA-AGGTAAGAA-GTTTTATTATT--ACAAA--GTTCTTCTA-------------G--GG-----------AATT----AAA---ATACTTCACATCTT----GTAATATT--AAC--ATTTATT---TAATAGA------AAC---A---AA-T----A---AAACAT-ACGATACAAT-GACTTGTGAAAGTA-ATTTTGAAAGATATTGGTATGGACGTGGTAACAACACCTGATCC--ACTATCCCGGATGACCATTGGTTTAACC---GTG--TCACTTAGG-CA-TA--TTGCTGAAAATAGCAA--A--CGTTTTTCTTCTACTAGA-GAC-ACT--TTATC-TACTCTATC-TAC-AACTCC-AGAC-GT-ACAGAAAGGTAA-CGAA------AAGAA--A-ATAC-A--ATGTGTACTA-GCACAACGTTTAC--CA-ATG--AGAGTGAACT-TTTCC------AT-AAC-TGTA-----T----T---------A---------CTGCA--------AGGT-------AAATTA-A--CATCACAC--TCACACGG--CAAGAATGTTACGTA--C-TACAAT-G---GGAATAATA-T-GTT-GGCATCATGCAATATT--ATACATAA--TAT-GTTGAAT--CT-------ACAAA---AGCTG-TATAATATGAGTTCTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAAatcta
gi|3 : GATTGTGCTTATCAATGTCCCTTCCCCTCCTATGGAAAGGAATGCCAA-CTCGTGTGT-AACTGTTCTAAAGGCCAATGTAACCATGTAAAAGGATGCTCAA-AAAGTGG---TA---AGAGA-GA----TTG-TATAGGTAAAT---TAATT----AA-TT-AATGATT-GATACA-ACCATGGC-TGTTTGATATA-CTTTAAAA--ATTCTA-----TTTTATTTAAAAAAAAAT--ATT-TTT-ACATTCAAGT--ATGCCC-TCCGGGTT---ATT-CAGATGACT--TTTGTGA-ATTTGAA-TGCCGTTATCC-AAATTTTGG---TATTGG-ATGTCAGAA-TGAATGC--TTG-TGT--GACAAAGAGAAGTGTGATCCTGC---AAAT-GG-ATGCCA-AGGTGTGAG-GTTTTATTGAT--ACAAA--TTCCCTCTC-T------TG--TA--CGTAACAGAG--AAATA----AAT----TACTTTACAACGTAACAATA----T--AAAG-ATTTGTT---TAACAG-----TGAGTCA-A---AATT----A---AAGCAT-ATA-----GC-GATATTCTAAAGC-TATTTTCAATCGTATAGGAATGGAAATGGTGACAA---CTGCTCT--ACAATCCAGGACGACCATTGATATCTCC---GTG--TCACTCAAG-CA-TG--ATGCTGACACTAACAG--A--AG-TTTTCTTCCAC--CC-GAC-ATT--TTCTC-TGCTCTTTC-TAC-GACTAC-AGAC-AT-GCAGAAAGGTAG-GGCA------AACAATGA-CCCA-ATGAAA------T-GCCA--TCTTCGTA-TGAAT---AGGCTTTAAA-TTTACTTCAG-AGCACT-T-TAA----T----TG--------A----------TACA--------AAGT-------CAATTT-A--TGCTGTGC--TCACTCGGAACAAG
gi|4 : tggatactttgggattTCAATGTA-TCCTGCAAAAGGATGCCCAGGAAAATGG---TA---AGAAAAGAGT------TAC-----TATATGTCAT---GTCA-TT-AGC--T-AGAGAAAAGT-ATGGAGTGTC----GCAAC-----AA--AA---AACAAATCTT--G-AAAAAATTAT-GGTTGTT---CGCAA-AGACTTTGTCCACCCAAGCTCGGATTCTAGGTAAAT--CTTGTGA-AGTTAAACTG-CGATATCC-ATCACATGGATAC-TGGG-ATGTCAGAACTAACTGT--GTGTTGT--AAAAAGGAGAAAT-TTATCCTAC---A
gi|4 : A--TTCGAAAAA-A---AA-TTACAACTTAAACATTAGG-----ATCGGCGTGTTGA-GTAATTTTTGA---GTATTGCTGTGAA-GTTGAAACAACACCGGCGCC--ACACTTCAG-ATGATCGAAAACATTTCC---GC---TCACTGAGAACA-TGTTAGGGCGATATTAACAGGGA--CG-TTTACCTCCAA--GA-GAC-ACT--CTTTCCTGCTTCATCCTACCAACTCCGATTC-ACAGCATAAAGGTAA-AGAT------AGTAC--G-AAAT-A--CAA------TTGCCC--TGTTGACA-AAGATGGAAGGTTAGAT--TTTACTTTGC-AGTAAC-T-TAG----TATTCTA--------A---------CTGTATT------ATGCCATTGAAAAATTTGA--TATTGTGC--TCACACG---CAAGAATGTGATATAGGC-TATAAT-TTTTGGAACAGCATT-TTTCGTTATATTGC-ATA-T--A-----AA--AACAGTT-AATAACCTCATCTAACGAAGATTACTTACATTGTAT-ATTTATAttaaataaacatgtttgagaatttacgatataaccatgtggaccatgcattcgaaaaaaaattacaacttaaacattaggatcggcgtgttgagtaatttttgagtattgctgtgaagttgaaacaacaccggcgccacacttcagatgatcgaaaacatttccgctcactgagaacatgttagggcgatattaacagggacgtttacctccaagagacactctttcctgcttcatcctaccaactccgattcacagcataaaggtaaagatagtacgaaatacaattgccctgttgacaaagatggaaggttagattttactttgcagtaacttagtattctaactgtattatgccattgaaaaatttgatattgtgctcacacgcaagaatgtgatataggctataatttttggaacagcatttttcgttatattgcatataaaaacagttaataacctcatctaacgaagattacttacattgtatatttata
gi|5 : tcaatgtatcctgcaaaaggatgcccaggaaaatggtaagaaaagagttactatatgtcatgtcattagctagagaaaagtatggagtgtcgcaacaaaaaacaaatcttgaaaaaattatggttgttcgcaaagactttgtccacccaagctcggattctaggtaaatcttgtgaagttaaactgcgatatccatcacatggatactgggatgtcagaactaactgtgtgttgtaaaaaggagaaatttatcctacattaaataaacatgtttgagaatttacgatataaccatgtggaccatgcTTAA-ATCG-TA-GCCTGTGAGCTTGGGTATTTTGGGAAAACTTGTAATGAGCTATGTCTATATCCCTCCTTTGGGAAAGGATGCCAGGCA-ATCTGC-AACTGCTCCAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---TA---AGAAA-GAGT---TA-C-TA--TATGTATGT---------A-TTTAGC--TTAGAGAAAAGT-ATGGAGTGTC----GCA-C-----AA--AACAAA-----TCTT-----GAAAATTATTGGTTGTTT-GC-----AGA--TTGTCC-ACCAGGGT---ATT-TAGGTAAAT--CTTGTGA-AGTTAAA-TGCCGATATCC-ATCACATGG---TATGGG-ATGTCAGAA-TAACTGT--GTG-TGT--AAAAAGGAGAAATGTTATCCTACATTAAAT-AA-ACAT-----GTTTGAA-AATTTA-CGAT--ATAA
gi|5 : cAATTA-A---AA-T----A---AACCAT-AGG-----AT-GGCGTGTTGAAGTAATTTTTGAA-GGTATTGCTGTGAAGGTGGAAACAACACCGGCGCC--ACAATCCAGGATGATCGAAAACATTTCC---GTC--TCACTGAGA-CA-TG--AGGCGCATATTAACAG--A--CG-TTTACCTCCAA--GA-GAC-ACC--TTTCC-TGCTTCATC-TAC-AACTCC-ATTC-AC-ACATAAAGGTAA-AT--------AGTAC--G-AAAT-A--CAA------T-GCCC--TGTTGACA-AAGATG--AAGGTAGACT-TTTACTTTGGCAT-AAC-T-TAG----TATTCTA--------A---------CTGTATTATTGCCATGA-------AAATTG-A--TATTGTGC--TCACACGG--CAAGAATccatgtgacatgcattcgaaaaaaaattaaaataaaccataggatggcgtgttgaagtaatttttgaaggtattgctgtgaaggtggaaacaacaccggcgccacaatccaggatgatcgaaaacatttccgtctcactgagacatgaggcgcatattaacagacgtttacctccaagagacacctttcctgcttcatctacaactccattcacacataaaggtaaatagtacgaaatacaatgccctgttgacaaagatgaaggtagacttttactttggcataacttagtattctaactgtattattgccatgaaaattgatattgtgctcacacggcaagaat
gi|6 : cttaaatcgtagcctgtgagcttgggtattttgggaaaacttgtaatgagctatgtctatatccctcctttgggaaaggatgccaggcaatctgcaactgctccagagatcaatgtaatcctgcaaaaggatgcccagaaaatggtaagaaagagttactatatgtatgtatttagcttagagaaaagtatggagtgtcgcacaaaacaaatcttgaaaattattggttgtttgcagattgtccaccagggtatttaggtaaatcttgtgaagttaaatgccgatatccatcacatggtatgggatgtcagaataactgtgtgtgtaaaaaggagaaatgttatcctacattaaataaacatgtttgaaaatttacgatataaccatgtgacatgcattcgaaaaaaATATTG-TA-GTCTGTCAAATTTTGTATGCTCGGAAAGATTGTGCACAGCAATGTCCTTTCGCCTCTTTTGGGATGATATATCAGACATAT-TGCAAAATATCGTAGAGATCAATGTAATCCTGCAAAAGTATGCACAG-AAAATTG---CA---AGACA-GAGTGTTTA-TATAGATATATATGTCATTG-GAAA-TTTAAC--GTAGAGACA-GC-CTGAAATATT----GCA-C-----AAGGATA--A-----TCTT--C---AAAATGATTGATTGTTT-ACGCTCTAGA--CTGTCC-GCCGGGTT---ATT-TTGGTGACT--CCTGTAA-AATTAAA-TG
gi|7 : tgttataaaataaacacctacttcactattctaatgaagtatattagtatatattaacatttatagtttataattgcatgtagatgttttattaccaagacattagtgagtgcaaagtggatacttcgaccacattaacatagtaatatattcattatatttgtgttcacaggccttccaatggttacagatgggatagaaacaacgacaaatgtctccgtatgtactggaatatgaaaatgaaaagattttttttatatccatgaatggtttcttgattttaatgtgaaaataaccacaaattttgttttgttaaaaatattcaaatatatcacggcatatcttttgtcggcataatttgaggtaaaatatggcttTTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTTTCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACA-GAGTGTTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTT--CTAGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TG
gi|8 : tcttgtaataaaataaacatccacttcaccatcttgatgaagtagattagcatataataacatatatagtttatgattgtatgtagctgttttattaccaagaaaataatggggggggggggagtgcaaagtggacatcttcgaccatagtagttataaaatataattcatttatttgtgttgacaggccttgcagaagttgcaattggttacagatgggagagaaggatacacaacacagggttactctgtatgtattcggaatatgaaaatgacaatatttgtatatctattaatgaaattgttttgtgtaaaaagattcaaataattattcacaggcatatctttttgtcggcatagtgttgccggtaaatgtggcTGTTT-ATATTCTAGA--ATGTCC-CCCACGCT----TT-TAGGT-ACT--CTTGTGCCAGTTAAA-TGCCGGC--CC-AGCATATGG---TGTGGATCTGTCAGGG-TACATG---TCG-TGTTGAAAAAGGAGAAGTGTGATC-TGC---AAAT-GGGAT-TCA-AGGTGTGAATGTTTTATGATTGAACAG---TTTCTTCTA-TGATGGATG-A-G--AGTAACAGAAGAAAATTGATAAACTGTGTACTTTACATTTT----GCA----TTCAAACCATT----------CAGT--TAAGAATAA-ATAAGA-T----G---AAATAT-ACA-----AT-GAC-TGTTAAAGTGTATTTTGAAAGGTATTGGTTTG-ACGTGGTAACAACACTTGCTCCGAACA-TCCAGAATGACCCATAATATT-CC---GTC--TCACTGAGA-CAGTA--AT-CTGACACTAACAG--AGACG-TTCTT----AC--GA-GAAGACT--TCATC-TGCTCTATC-TAC-ATCTCC-AGCT-GT-GCATAAAGGTAA-ACAC------A--AA--G-AAAA-A--GAA------A-GCCT--CATTTACAGCAGATG--AGGTTA-AAC-ATTATTTCGGCATCAGTAT-TTG----T----T---------A---------TTGCA--------ATGT-------AAATTT-AACGATCAC-CAATCACACGGC-CAGGGATGT
gi|9 : CAAGG--AAATT----AAC---TTACTTTACATTTT----GCAAAA-T--AAAC-ATTT-TTATTTATTAAAAATTTAAATAG-A---AA-T----A---AAACAT-ACG-----AT-GACGAATAAAAGT-TGTTTTGAAAGGTATTGGTGTGGACATGGTAACAAGAACTACTCC--ACGATCCAGGATGACGATTGATATTTCTGGGGTGGACTACTGAGA-CA--G--GTCCTGCCACGAACAG--A--AG-TTTTATT--AT--GGTGAC-ACTGGTAATC-TGCTCTA-A-TAC-GACTTC--GTCAACAGCAG-AAGGTAA-AGAA------AACAA--ATACAATA--CAA------A-------CGTTC-CA-AAGAT-----AGTAAAACATTTACTTC-G-ATCAGC-T-TAATATTT----TA--------AACTGTATTGCTGCA--------ATGT-------TATTTT-A--TATCGCAC--CCa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTCATTGTATTTGTGTTTACAGGCCTTTTAAATGTTGCTATGGTTACAGATGGGATAGAAATACCGAAACATTTCTCCATATGTACTGGAATATGGAAATGAGAATATCAGTGTACACATTAATGATTTCCTAATTTTGATATGATATCATGCGAAAAAAAAAACCCAGTTATTGTTTTAGTTAAAGACCCAAATATATCACTGCACATCTGTGTTCAATACTCAGCAAGGTATGAGGAAAAATGTAGTTCATA
Unaligned ( gi|13 ): ATATTCATGAATGTAATGGATATACAATTCTAATTTTAAGTAGATGAGTAAATATAATGACATCTAAAGTACATGGCTGTATGTAGATGATTTATTGCCAAAACAATTATAAGTGGAAAGAGGCCTGTTCAGCCATATGTCATAGTAAGATTTTATGTTTACAGACCTTTTAAATGTTGCAGTGGTTACAGATGG
Unaligned ( gi|15 ): GTTGCAGTGGTTACAGATGGGATAGAAATACTGAAAAATGTCTCCGTACGTATTTGAATATACAACGAAGAATATTTGTATATTCTTTAACTCTAACATGATATCATG
Unaligned ( gi|16 ): CGATTTTATATATGCTTTTAGGTCTTTCAAATGTTGCAGTGGTTACAAATGGGATAGGGATACTAAACTTTGTACCCGTAAGTA
Alignments
lowQualScore : 1 1 222222 333333333333333 1 1111 11111 2222222222222222222222 111 2222222222222222222222222222 1111 2222 33333333333 22 33333333 11111111 11111 11 111 1 22222222222222222222222222222222222222 111 33333333333333333333333 22222222 1111111 11 11 1 333 222 22 3333333333 11 11 1 11 11 2222222 1 222 1 1 1 1
lowQualScore : 6 8 8 0 11 5 0 1 6 6 1 0 4 4 5 5 0 6 0 3 5 888 888 1 111111 3 3 444444444444444 66 0 5 0 0000 5 22222 66 8888888888888888888888 0 0 4 22 3 555 4 777 4 55 4 4 0 5 0 888 0 5 5 11 999 5 66 1 0 888 5 5 0 5 5 5 888888 222 4444444444444444444444444444 4444 2222 22222222222 22 99 3 66666666 666 5 22222222 5 22222 5 3 77 3 1 0 5 2 2 66 7 44 0 888 111 5 5 66 1 66 66 5 2 3 888 5 5 66 0 5 5 66 5 1 5 0 1 5 55555555555555555555555555555555555555 5 1 88 66 0 999 1 5 222 1 6666 5 3 66666666666666666666666 55555555 6666666 5 66 1 77 55 1 77 0 000 111 6 0 11 3 0000000000 33 11 0 33 3 33 77 6666666 1 0 3 2 000 1 1 1 5 5 5 1 22 5
lowQualScore : . . . . .. . . . . . . . . . . . . . . . . ... ... . ...... . . ............... .. . . . .... . ..... .. ...................... . . . .. . ... . ... . .. . . . . . ... . . . .. ... . .. . . ... . . . . . . ...... ... ............................ .... .... ........... .. .. . ........ ... . ........ . ..... . . .. . . . . . . .. . .. . ... ... . . .. . .. .. . . . ... . . .. . . . .. . . . . . . ...................................... . . .. .. . ... . . ... . .... . . ....................... ........ ....... . .. . .. .. . .. . ... ... . . .. . .......... .. .. . .. . .. .. ....... . . . . ... . . . . . . . .. .
lowQualScore : 0 0 0 6 22 0 8 0 7 7 0 4 0 1 0 7 7 6 2 6 0 888 888 0 111111 2 4 555555555555555 99 0 0 9 6666 0 55555 99 6666666666666666666666 1 9 0 11 5 888 0 000 0 55 0 0 2 0 4 888 2 0 0 22 111 0 99 0 2 888 7 7 1 7 7 4 777777 999 6666666666666666666666666666 2222 2222 22222222222 55 22 7 44444444 111 0 22222222 0 55555 0 4 88 4 1 2 6 5 5 99 4 11 4 888 444 0 0 99 1 99 99 0 2 4 222 0 0 99 5 0 0 11 0 0 0 0 0 0 22222222222222222222222222222222222222 4 4 55 00 2 444 4 9 555 4 6666 4 2 00000000000000000000000 00000000 2222222 0 99 7 99 88 0 55 0 000 000 5 8 00 2 8888888888 88 00 0 88 2 88 33 0000000 0 7 7 0 555 0 0 0 5 5 5 0 00 0
consensus : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAA-GTTTTATCGTT--ACAAA--TTTCTTCTATG----ATGCATGC--G--TAACAGAG--AAATT----AAC---GTACTTTACATCTT-GCAATA-TAAA--ATTT--ATTTAACAGA---TTGAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-G-A---AATA--------NAAN-GCCNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAACAAA-ATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
Reference ( family-1834 ) : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAA-GTTTTATCGTT--ACAAA--TTTCTTCTATG----ATGCATGN--G--TAACAGAG--AAATT----AAC---GTACTTTACATCTT-GCAA-A-TAAA--ATTT--ATTTAACAGA---TTGAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-A-A---NANA--------NAAN-GCCCCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAACGAA-ATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
gi|1 : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TGTCGGTATCC-AGCATATGG---CGTGGA-ATGCCAGGG-TACATGC--TCG-TGT--GACGAGGAGAAGTGTCGTCCTGC---AAAT-GG-ATGTCA-AGGTGTGAC-GTTTCATTATT--CCAAA--TTTCTTCTATG----ATGCATGCACG--TAACGGAG--AAATT----GAC---GTACTTTACAT---------A-TAAG----TC--AT----CA------TGAATAA-AAA-T----A---AAACAT-ACA-----AT-GACATGATAAAGTATATTTCGAA-GGTAATGGTATGGACGCAGTAACAACAGCTGCTCC--GAAGTCCACGATGACCACTGACATCTCC---GTA--TCACTGAGC-CA-TG--ATGCTGACATTAACAG--A--CG-TTTTCCTTCAC--GA-GAC-ACT--TTATC-TGCTGCATC-TAC-TATTCC-AGTC-AT-GCTTAAAGGTAACAGCATCCACCATTAA-A-A---GAAA--------AAAA-GCCTCGTTCACA-CAGACG--AGAGTATATC-TTTACTCTGG-ATCAGCTTAAT-----TA--------A---------TTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGGATGTAACGAA--C-TACAGTGATTTGGAACAATA-TCTTTTGCTAT-TTGCAATA-TACA-----GA--AAT-CTT-AAT--CTTC--CTAA-AAC-ATT-C-TCCGTCGCATAAGTTATA---ATCAATGATCTTC-CGAGTAATCTTACTTAAATGTGTATTTCTAAATAGA-AGATAA
gi|10 : TGGGAGAGGATGCCATGTA-ATCTGC-AACTGCACTAGAAATCATTGTAATCCCACAAAAGGATGCCCTG-AAAATGGTTACATGTAGAATGAGTG----ACTATAAATATATGTG----------------A---TTAAGGACA-AC-GTGGGATGTT----GCA-C-----GA--AG---A-----TTATCT----TGAAAATGATTGGTTGTTT-ACGTTCTAAA--TTGTCC-CCCAGGCT---ATA-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGT---CGTAGA-ATGCAAGGG-CGTTTGT--TCA-TGT--GAAAAAGAAAAGTGTGATCCTGC---AAAT-GG-ATGTCG-AGGTGTGAA-G-TTTATCGT-----AAACTTTTATTCTATT----ATGCATGT--G--
gi|11 : --ATTT--ATTTAACA-A---T--AATGAGAAA-T----A---AAACAT-ACG-----AT-GGCGTGTTAAAGTA-ATTTTGAAAGGTAATGGAATGGAATCGGTAACAAGAGCTGCTCC--ACGATAGATGATGGCCATTGCTATTTCC---ATG--CTACCTAGA-CA-TG--CTGCTGACATTAGCAG--A--CG-CTTTCCTTCTA--GA-GAC-AAT--GTATC-TCATCTATC-TAC-GACTAC-AAAC-AT-GTGGAAAGGTAG-AAAA------AATAT-A-A---TACA--------A-----CCTC---TGCA-TAAATG--ATAATAAGCA-TTTTCCTCGA-ATCAGCTTGGTATTC-TAATTCTTTTA---------TTGCA--------ATGT-------AATTTT-A--T
gi|14 : GTTGTTTTA---TCAAGA--ATGTCT-ACCAGGAT---ACA-CAGG-GACCAACT-GTGA-ACTTCAA-TGTCGGTATCCAAGC-TTTGG---GGTCGG-CTGTCAACA-GAAATGCAATTG-TAC--GAAA--GACAATTGCCATGTT-C---AAACGGG-ATG-CATTGGTATG-G-GATATATC-TT--AC-GA--TTTC
gi|17 : aaaatTAGGCCTATAAT---TTGGAACAGCA-TATTTCGTTAT-ATGCAATA-T--A-----AAACAGT-TAT-AAC--CTTC--atttcgtgt
gi|2 : gataTTAAAATTGGTAAGTCTGGTAGCTTGGGTAT-TTTGG---GACTGTTTACAGCAATGTCGAT-TCCCCTCGTTTGGGAGAGGATGCCAGGCA-ATCTGC-AACTGCTCTAGAGATCAATGTAATCACGCAAACGGATGTCCAG-AAAATGG---TA---AGAATGCGTG----ACTATAAATATATATG--ATTAAGAAA-TG-AAC--TTGGAGACA-GC-ATGGAATGTT----GTT-C-----AA--AT---A-----TTATCT------------------TGTTT-ACGTTATAGA--TTGTCC-CCCAGGCT---ATG-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGG---CGTGGA-ATGTCAGGA-TACATGC--TTG-TGT--GAAAAGGAGAAGTGTCATCCTGG---AAAT-GG-ATGTCA-AGGTAAGAA-GTTTTATTATT--ACAAA--GTTCTTCTA------------GG--G-------------AATT----AAA---ATACTTCACATCTT-GTAATATTAAC--ATTT--ATTTAATAGA------AAC---AAA-T----A---AAACAT-ACGATACAAT-GACTTGTGAAAGTA-ATTTTGAAAGATATTGGTATGGACGTGGTAACAACACCTGATCC--ACTATCCCGGATGACCATTGGTTTAACC---GTG--TCACTTAGG-CA-TA--TTGCTGAAAATAGCAA--A--CGTTTTTCTTCTACTAGA-GAC-ACT--TTATC-TACTCTATC-TAC-AACTCC-AGAC-GT-ACAGAAAGGTAA-CGAA------AAGAA-A-A---TACAATGTGTACTAGC-ACAACGTTTAC--CA-ATG--AGAGTGAACT-TTTCC------AT-AACT--GTATT------------A---------CTGCA--------AGGT-------AAATTA-A--CATCACAC--TCACACGG--CAAGAATGTTACGTA--C-TACAAT-G---GGAATAATA-T-GTT-GGCATCATGCAATATT--ATACATAA--TAT-GTTGAAT--CT-------ACAAA-A--GC-TGTATAATATGAGTTCTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAAatcta
gi|3 : GATTGTGCTTATCAATGTCCCT-TCCCCTCCTATGGAAAGGAATGCCAA-CTCGTGTGT-AACTGTTCTAAAGGCCAATGTAACCATGTAAAAGGATGCTCAA-AAAGTGG---TA---AGAGAGA----TT-G-TATAGGTAAAT---TAATT----AA-TT-AATGATT-GATACA-ACCATGGC-TGTTTGATATA-CTTTAAAA--ATTCTA-----TTTTATTTAAAAAAAAATATT-----TTT-ACATTCAAGT--ATGCCC-TCCGGGTT---ATT-CAGATGACT--TTTGTGA-ATTTGAA-TGCCGTTATCC-AAATTTTGG---TATTGG-ATGTCAGAA-TGAATGC--TTG-TGT--GACAAAGAGAAGTGTGATCCTGC---AAAT-GG-ATGCCA-AGGTGTGAG-GTTTTATTGAT--ACAAA--TTCCCTCTCT------TG--TAC--G--TAACAGAG--AAATA----AAT----TACTTTACAACGTAACAATA-TAAAG-ATTT--GTTTAACAG-----TGAGTCA-AAATT----A---AAGCAT-ATA-----GC-GATATTCTAAAGC-TATTTTCAATCGTATAGGAATGGAAATGGTGACAA---CTGCTCT--ACAATCCAGGACGACCATTGATATCTCC---GTG--TCACTCAAG-CA-TG--ATGCTGACACTAACAG--A--AG-TTTTCTTCCAC--CC-GAC-ATT--TTCTC-TGCTCTTTC-TAC-GACTAC-AGAC-AT-GCAGAAAGGTAG-GGCA------AACAATG-ACCCAATG--------AAAT-GCCATCTTCGTA-TGAAT---AGGCTTTAAA-TTTACTTCAG-AGCACTTTAAT-----TG--------A----------TACA--------AAGT-------CAATTT-A--TGCTGTGC--TCACTCGGAACAAG
gi|4 : tggatactttgggattTCAATGTA-TCCTGCAAAAGGATGCCCAGGAAAATGG---TA---AGAAA-AGAG-TT-A-C-------TATATGTCAT---GTCA-TT-AGC--T-AGAGAAAAGT-ATGGAGTGTC----GCAAC-----AA--AA---AACAAATCTTG-----AAAAAATTAT-GGTTGTT---CGCAA-AGACTTTGTCCACCCAAGCTCGGATTCTAGGTAAAT--CTTGTGA-AGTTAAACTG-CGATATCC-ATCACATGGATAC-TGGG-ATGTCAGAACTAACTGT--GTGTTGT--AAAAAGGAGAAAT-TTATCCTAC---A
gi|4 : ---TCGAAAAA-AAA-TTACAACTTAAACATTAGG-----ATCGGCGTGTTGA-GTAATTTTTGA---GTATTGCTGTGAA-GTTGAAACAACACCGGCGCC--ACACTTCAG-ATGATCGAAAACATTTCC---GC---TCACTGAGAACA-TGTTAGGGCGATATTAACAGGGA--CG-TTTACCTCCAA--GA-GAC-ACT--CTTTCCTGCTTCATCCTACCAACTCCGATTC-ACAGCATAAAGGTAA-AGAT------AGTAC-G-A---AATA--------CAATTGCCCTGTTGACA-AAGATGGAAGGTTAGAT--TTTACTTTGC-AGTAACTTAGTATTC-TA--------A---------CTGTATT------ATGCCATTGAAAAATTTGA--TATTGTGC--TCACACG---CAAGAATGTGATATAGGC-TATAAT-TTTTGGAACAGCATT-TTTCGTTATATTGC-ATA-T--A-----AA--AACAGTT-AATAACCTCATCTAACGAAGATTACTTACATTGTAT-ATTTATAttaaataaacatgtttgagaatttacgatataaccatgtggaccatgcattcgaaaaaaaattacaacttaaacattaggatcggcgtgttgagtaatttttgagtattgctgtgaagttgaaacaacaccggcgccacacttcagatgatcgaaaacatttccgctcactgagaacatgttagggcgatattaacagggacgtttacctccaagagacactctttcctgcttcatcctaccaactccgattcacagcataaaggtaaagatagtacgaaatacaattgccctgttgacaaagatggaaggttagattttactttgcagtaacttagtattctaactgtattatgccattgaaaaatttgatattgtgctcacacgcaagaatgtgatataggctataatttttggaacagcatttttcgttatattgcatataaaaacagttaataacctcatctaacgaagattacttacattgtatatttata
gi|5 : tcaatgtatcctgcaaaaggatgcccaggaaaatggtaagaaaagagttactatatgtcatgtcattagctagagaaaagtatggagtgtcgcaacaaaaaacaaatcttgaaaaaattatggttgttcgcaaagactttgtccacccaagctcggattctaggtaaatcttgtgaagttaaactgcgatatccatcacatggatactgggatgtcagaactaactgtgtgttgtaaaaaggagaaatttatcctacattaaataaacatgtttgagaatttacgatataaccatgtggaccatgcatTTAA-ATCG-TA-GCCTGTGAGCTTGGGTATTTTGGGAAAACTTGTAATGAGCTATGTCTATATC-CCTCCTTTGGGAAAGGATGCCAGGCA-ATCTGC-AACTGCTCCAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---TA---AGAAAGAGT---T-A-C-TA--TATGTATGT---------A-TTTAGC--TTAGAGAAAAGT-ATGGAGTGTC----GCA-C-----AA--AACAAA-----TCTT-------GAAAATTATTGGTTGTTT-GC-----AGA--TTGTCC-ACCAGGGT---ATT-TAGGTAAAT--CTTGTGA-AGTTAAA-TGCCGATATCC-ATCACATGG---TATGGG-ATGTCAGAA-TAACTGT--GTG-TGT--AAAAAGGAGAAATGTTATCCTACATTAAAT-AA-ACAT-----GTTTGAA-AATTTA-CGAT--ATAA---------CCATGTGACATGCATTC--G--AAA---AA--AAATT----AA
gi|5 : cAATTA-AAA-T----A---AACCAT-AGG-----AT-GGCGTGTTGAAGTA-ATTTTTGAAGGTATTGCTGTGAAGGTGGAAACAACACCGGCGCC--ACAATCCAGGATGATCGAAAACATTTCC---GTC--TCACTGAGA-CA-TG--AGGCGCATATTAACAG--A--CG-TTTACCTCCAA--GA-GAC-ACC--TTTCC-TGCTTCATC-TAC-AACTCC-ATTC-AC-ACATAAAGGTAA-AT--------AGTAC-G-A---AATA--------CAAT-GCCCTGTTGACA-AAGATG--AAGGTAGACT-TTTACTTTGGCAT-AACTTAGTATTC-TA--------A---------CTGTATTATTGCCATGA-------AAATTG-A--TATTGTGC--TCACACGG--CAAGAATaataaaccataggatggcgtgttgaagtaatttttgaaggtattgctgtgaaggtggaaacaacaccggcgccacaatccaggatgatcgaaaacatttccgtctcactgagacatgaggcgcatattaacagacgtttacctccaagagacacctttcctgcttcatctacaactccattcacacataaaggtaaatagtacgaaatacaatgccctgttgacaaagatgaaggtagacttttactttggcataacttagtattctaactgtattattgccatgaaaattgatattgtgctcacacggcaagaat
gi|6 : cttaaatcgtagcctgtgagcttgggtattttgggaaaacttgtaatgagctatgtctatatccctcctttgggaaaggatgccaggcaatctgcaactgctccagagatcaatgtaatcctgcaaaaggatgcccagaaaatggtaagaaagagttactatatgtatgtatttagcttagagaaaagtatggagtgtcgcacaaaacaaatcttgaaaattattggttgtttgcagattgtccaccagggtatttaggtaaatcttgtgaagttaaatgccgatatccatcacatggtatgggatgtcagaataactgtgtgtgtaaaaaggagaaatgttatcctacattaaataaacatgtttgaaaatttacgatataaccatgtgacatgcattcgaaaaaaATATTG-TA-GTCTGTCAAATTTTGTATGCTCGGAAAGATTGTGCACAGCAATGTCCTT-TCGCCTCTTTTGGGATGATATATCAGACATAT-TGCAAAATATCGTAGAGATCAATGTAATCCTGCAAAAGTATGCACAG-AAAATTG---CA---AGACAGAGTGTTT-A-TATAGATATATATGTCATTG-GAAA-TTTAAC--GTAGAGACA-GC-CTGAAATATT----GCA-C-----AAGGATA--A-----TCTTC-------AAAATGATTGATTGTTT-ACGCTCTAGA--CTGTCC-GCCGGGTT---ATT-TTGGTGACT--CCTGTAA-AATTAAA-TG
gi|7 : tgttataaaataaacacctacttcactattctaatgaagtatattagtatatattaacatttatagtttataattgcatgtagatgttttattaccaagacattagtgagtgcaaagtggatacttcgaccacattaacatagtaatatattcattatatttgtgttcacaggccttccaatggttacagatgggatagaaacaacgacaaatgtctccgtatgtactggaatatgaaaatgaaaagattttttttatatccatgaatggtttcttgattttaatgtgaaaataaccacaaattttgttttgttaaaaatattcaaatatatcacggcatatcttttgtcggcataatttgaggtaaaatatggcttTTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TG
gi|8 : tcttgtaataaaataaacatccacttcaccatcttgatgaagtagattagcatataataacatatatagtttatgattgtatgtagctgttttattaccaagaaaataatggggggggggggagtgcaaagtggacatcttcgaccatagtagttataaaatataattcatttatttgtgttgacaggccttgcagaagttgcaattggttacagatgggagagaaggatacacaacacagggttactctgtatgtattcggaatatgaaaatgacaatatttgtatatctattaatgaaattgttttgtgtaaaaagattcaaataattattcacaggcatatctttttgtcggcatagtgttgccggtaaatgtggcTGTTT-ATATTCTAGA--ATGTCC-CCCACGCT----TT-TAGGT-ACT--CTTGTGCCAGTTAAA-TGCCGGC--CC-AGCATATGG---TGTGGATCTGTCAGGG-TACATG---TCG-TGTTGAAAAAGGAGAAGTGTGATC-TGC---AAAT-GGGAT-TCA-AGGTGTGAATGTTTTATGATTGAACAG---TTTCTTCTATG----ATGGATGA--GAGTAACAGAAGAAAATTGATAAACTGTGTACTTTACATTTT-GCAT-T-CAAACCATTC--AGTTAA--GA---ATAAATAA-GA--T----G---AAATAT-ACA-----AT-GAC-TGTTAAAGTGTATTTTGAAAGGTATTGGTTTG-ACGTGGTAACAACACTTGCTCCGAAC-ATCCAGAATGACCCATAATATT-CC---GTC--TCACTGAGA-CAGTA--AT-CTGACACTAACAG--AGACG-TTCTT----AC--GA-GAAGACT--TCATC-TGCTCTATC-TAC-ATCTCC-AGCT-GT-GCATAAAGGTAA-ACAC------A--AA-G-A---AAAA--------GAAA-GCCTCATTTACAGCAGATG--AGGTTA-AAC-ATTATTTCGG---CA--TCAGTATTTGTT--------A---------TTGCA--------ATGT-------AAATTT-AACGATCAC-CAATCACACGGC-CAGGGATGT
gi|9 : CAAGG--AAATT----AAC---TTACTTTACATTTT-GCAA-AATAAAC-ATTTTTATTTATTAAAAATTTAAATAG-AAA-T----A---AAACAT-ACG-----AT-GACGAATAAAAGT-TGTTTTGAAAGGTATTGGTGTGGACATGGTAACAAGAACTACTCC--ACGATCCAGGATGACGATTGATATTTCTGGGGTGGACTACTGAGA-CA--G--GTCCTGCCACGAACAG--A--AG-TTTTATT--AT--GGTGAC-ACTGGTAATC-TGCTCTA-A-TAC-GACTTC--GTCAACAGCAG-AAGGTAA-AGAA------AACAA-ATAC--AATA--------CAAA-----CGTTC-CA-AAGAT-----AGTAAAACATTTACTTC-G-ATCAGCTTAATATTT-TA--------AACTGTATTGCTGCA--------ATGT-------TATTTT-A--TATCGCAC--CCa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTCATTGTATTTGTGTTTACAGGCCTTTTAAATGTTGCTATGGTTACAGATGGGATAGAAATACCGAAACATTTCTCCATATGTACTGGAATATGGAAATGAGAATATCAGTGTACACATTAATGATTTCCTAATTTTGATATGATATCATGCGAAAAAAAAAACCCAGTTATTGTTTTAGTTAAAGACCCAAATATATCACTGCACATCTGTGTTCAATACTCAGCAAGGTATGAGGAAAAATGTAGTTCATA
Unaligned ( gi|13 ): ATATTCATGAATGTAATGGATATACAATTCTAATTTTAAGTAGATGAGTAAATATAATGACATCTAAAGTACATGGCTGTATGTAGATGATTTATTGCCAAAACAATTATAAGTGGAAAGAGGCCTGTTCAGCCATATGTCATAGTAAGATTTTATGTTTACAGACCTTTTAAATGTTGCAGTGGTTACAGATGG
Unaligned ( gi|15 ): GTTGCAGTGGTTACAGATGGGATAGAAATACTGAAAAATGTCTCCGTACGTATTTGAATATACAACGAAGAATATTTGTATATTCTTTAACTCTAACATGATATCATG
Unaligned ( gi|16 ): CGATTTTATATATGCTTTTAGGTCTTTCAAATGTTGCAGTGGTTACAAATGGGATAGGGATACTAAACTTTGTACCCGTAAGTA
Alignments
lowQualScore : 1 1 222222 333333333333333 1 1111 11111 2222222222222222222222 111 111 33333333333333333333333333 1111 1111 2222 55555555555555555 11111111 11111 11 111 1 3333333333333333333 2222222222222 111 33333333333333333333333 22222222 1111111 11 11 1 333 222 22 3333333333 11 11 1 11 22222222 22222 1 222 1 1 1 1
lowQualScore : 6 8 8 0 11 5 0 1 6 6 1 0 4 4 5 5 0 6 0 3 5 888 888 1 111111 3 3 444444444444444 66 0 5 0 0000 5 22222 66 8888888888888888888888 0 0 4 22 3 555 4 777 4 55 4 4 0 5 0 888 0 5 5 11 999 5 66 1 0 777 5 5 0 6666 0 5 6 9999999 666 55555555555555555555555555 66 0000 9999 7777 6 6666 77 1 1 55555555555555555 666 5 22222222 5 22222 5 3 77 3 1 0 5 2 2 66 7 44 0 888 111 5 5 66 1 66 66 5 2 3 888 5 5 66 0 5 5 66 5 1 5 0 1 5 2222222222222222222 1 7777777777777 5 1 1 88 66 0 999 1 5 222 1 6666 5 3 66666666666666666666666 55555555 6666666 5 66 1 77 55 1 77 0 000 111 6 0 11 3 0000000000 33 11 0 33 3 11111111 4 11111 1 0 3 2 000 1 1 1 5 5 5 1 22 5
lowQualScore : . . . . .. . . . . . . . . . . . . . . . . ... ... . ...... . . ............... .. . . . .... . ..... .. ...................... . . . .. . ... . ... . .. . . . . . ... . . . .. ... . .. . . ... . . . .... . . . ....... ... .......................... .. .... .... .... . .... .. . . ................. ... . ........ . ..... . . .. . . . . . . .. . .. . ... ... . . .. . .. .. . . . ... . . .. . . . .. . . . . . . ................... . ............. . . . .. .. . ... . . ... . .... . . ....................... ........ ....... . .. . .. .. . .. . ... ... . . .. . .......... .. .. . .. . ........ . ..... . . . . ... . . . . . . . .. .
lowQualScore : 0 0 0 6 22 0 8 0 7 7 0 4 0 1 0 7 7 6 2 6 0 888 888 0 111111 2 4 555555555555555 99 0 0 9 6666 0 55555 99 6666666666666666666666 1 9 0 11 5 888 0 000 0 55 0 0 2 0 4 888 2 0 0 22 111 0 99 0 2 555 0 0 2 6666 2 0 9 4444444 222 00000000000000000000000000 99 6666 5555 0000 7 4444 99 4 7 11111111111111111 111 0 22222222 0 55555 0 4 88 4 1 2 6 5 5 99 4 11 4 888 444 0 0 99 1 99 99 0 2 4 222 0 0 99 5 0 0 11 0 0 0 0 0 0 4444444444444444444 0 9999999999999 0 0 4 55 00 2 444 4 9 555 4 6666 4 2 00000000000000000000000 00000000 2222222 0 99 7 99 88 0 55 0 000 000 5 8 00 2 8888888888 88 00 0 88 2 11111111 0 77777 0 7 7 0 555 0 0 0 5 5 5 0 00 0
consensus : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTATCGTT--ACAAA--TTTCTTCTATG------ATGCATGC--G--TAACAGAG--AAATT----AAC---GTACTTTACATTTT-GCAATA-TAAA--ATTC--ATTTAACA-G-A---TT-------GAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-GA---AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
Reference ( family-1834 ) : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAA-GTTTTATCGTT--ACAAA--TTTCTTCTATG------ATGCATGC--G--TAACAGAG--AAATT----AAC---GTACTTTACATCTT-GCAATA-TAAA--ATTT--ATTTAACA-G-A---TT-------GAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-GA---AATANAAN-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AAAATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
gi|1 : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TGTCGGTATCC-AGCATATGG---CGTGGA-ATGCCAGGG-TACATGC--TCG-TGT--GACGAGGAGAAGTGTCGTCCTGC---AAAT-GG-ATGTCA-AGGTGTGAC-GTTTCATTATT--CCAAA--TTTCTTCTATG------ATGCATGCACG--TAACGGAG--AAATT----GAC---GTACTTTACAT---------A-TAAG----TC--AT----CA--------T-------GAATAA-AAA-T----A---AAACAT-ACA-----AT-GACATGATAAAGTATATTTCGAA-GGTAATGGTATGGACGCAGTAACAACAGCTGCTCC--GAAGTCCACGATGACCACTGACATCTCC---GTA--TCACTGAGC-CA-TG--ATGCTGACATTAACAG--A--CG-TTTTCCTTCAC--GA-GAC-ACT--TTATC-TGCTGCATC-TAC-TATTCC-AGTC-AT-GCTTAAAGGTAACAGCATCCACCATTAA-AA---GAAAAAAA-G----------C-CTCGTTCACA-CAGACG--AGAGTATATC-TTTACTCTGG-ATCAGCTTAAT-----TA--------A---------TTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGGATGTAACGAA--C-TACAGTGATTTGGAACAATA-TCTTTTGCTAT-TTGCAATA-TACA-----GA--AAT-CTT-AAT--CTTC--CTAA--AACATT-C-TCCGTCGCATAAGTTATA---ATCAATGATCTTC-CGAGTAATCTTACTTAAATGTGTATTTCTAAATAGA-AGATAA
gi|10 : TGGGAGAGGATGCCATGTA-ATCTGC-AACTGCACTAGAAATCATTGTAATCCCACAAAAGGATGCCCTG-AAAATGGTTACATGTAGAATGAGTG----ACTATAAATATATGTG----------------A---TTAAGGACA-AC-GTGGGATGTT----GCA-C-----GA--AG---A-----TTATCT----TGAAAATGATTGGTTGTTT-ACGTTCTAAA--TTGTCC-CCCAGGCT---ATA-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGT---CGTAGA-ATGCAAGGG-CGTTTGT--TCA-TGT--GAAAAAGAAAAGTGTGATCCTGC---AAAT-GG-ATGTCG-AGGTGTGAA-G-TTTATCGT-----AAACTTTTATTCTATT------ATGCATGT--G--
gi|11 : --ATTT--ATTTAACA---A---T---------AATGAGAAA-T----A---AAACAT-ACG-----AT-GGCGTGTTAAAGTA-ATTTTGAAAGGTAATGGAATGGAATCGGTAACAAGAGCTGCTCC--ACGATAGATGATGGCCATTGCTATTTCC---ATG--CTACCTAGA-CA-TG--CTGCTGACATTAGCAG--A--CG-CTTTCCTTCTA--GA-GAC-AAT--GTATC-TCATCTATC-TAC-GACTAC-AAAC-AT-GTGGAAAGGTAG-AAAA------AATA---T---AATACAA-------------C-CTC---TGCA-TAAATG--ATAATAAGCA-TTTTCCTCGA-ATCAGCTTGGTATTC-TAATTCTTTTA---------TTGCA--------ATGT-------AATTTT-A--T
gi|14 : GTTGTTTTA---TCAAGA--ATGTCT-ACCAGGAT---ACA-CAGG-GACCAACT-GTGA-ACTTCAA-TGTCGGTATCCAAGC-TTTGG---GGTCGG-CTGTCAACA-GAAATGCAATTG-TAC--GAAA--GACAATTGCCATGTT-C---AAACGGG-ATG-CATTGGTATG-G-GATATATC-TT--AC-GA--TTTC
gi|17 : aaaatTAGGCCTATAAT---TTGGAACAGCA-TATTTCGTTAT-ATGCAATA-T--A-----AAACAGT-TAT-AAC--CTTC--atttcgtgt
gi|2 : gataTTAAAATTGGTAAGTCTGGTAGCTTGGGTAT-TTTGG---GACTGTTTACAGCAATGTCGAT-TCCCCTCGTTTGGGAGAGGATGCCAGGCA-ATCTGC-AACTGCTCTAGAGATCAATGTAATCACGCAAACGGATGTCCAG-AAAATGG---TA---AGAATGCGTG----ACTATAAATATATATG--ATTAAGAAA-TG-AAC--TTGGAGACA-GC-ATGGAATGTT----GTT-C-----AA--AT---A-----TTATCT------------------TGTTT-ACGTTATAGA--TTGTCC-CCCAGGCT---ATG-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGG---CGTGGA-ATGTCAGGA-TACATGC--TTG-TGT--GAAAAGGAGAAGTGTCATCCTGG---AAAT-GG-ATGTCA-AGGTAAGAA-GTTTTATTATT--ACAAA--GTTCTTCTA---------------------------GG--GAATT----AAA---ATACTTCACATCTT-GTAATATTAAC--ATTT--ATTTAATA-G-A-------------AAC---AAA-T----A---AAACAT-ACGATACAAT-GACTTGTGAAAGTA-ATTTTGAAAGATATTGGTATGGACGTGGTAACAACACCTGATCC--ACTATCCCGGATGACCATTGGTTTAACC---GTG--TCACTTAGG-CA-TA--TTGCTGAAAATAGCAA--A--CGTTTTTCTTCTACTAGA-GAC-ACT--TTATC-TACTCTATC-TAC-AACTCC-AGAC-GT-ACAGAAAGGTAA-CGAA------AAGA---A---AATACAAT-GTGTACTAGCAC-AACGTTTAC--CA-ATG--AGAGTGAACT-TTTCC------AT-AACT--GTATT------------A---------CTGCA--------AGGT-------AAATTA-A--CATCACAC--TCACACGG--CAAGAATGTTACGTA--C-TACAAT-G---GGAATAATA-T-GTT-GGCATCATGCAATATT--ATACATAA--TAT-GTTGAAT--CT-------AC-AAAA--GC-TGTATAATATGAGTTCTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAAatcta
gi|3 : GATTGTGCTTATCAATGTCCCT-TCCCCTCCTATGGAAAGGAATGCCAA-CTCGTGTGT-AACTGTTCTAAAGGCCAATGTAACCATGTAAAAGGATGCTCAA-AAAGTGG---TA---AGAGAGA----TT-G-TATAGGTAAAT---TAATT----AA-TT-AATGATT-GATACA-ACCATGGC-TGTTTGATATA-CTTTAAAA--ATTCTA-----TTTTATTTAAAAAAAAATATT-----TTT-ACATTCAAGT--ATGCCC-TCCGGGTT---ATT-CAGATGACT--TTTGTGA-ATTTGAA-TGCCGTTATCC-AAATTTTGG---TATTGG-ATGTCAGAA-TGAATGC--TTG-TGT--GACAAAGAGAAGTGTGATCCTGC---AAAT-GG-ATGCCA-AGGTGTGAG-GTTTTATTGAT--ACAAA--TTCCCTCTCT--------TG--TAC--G--TAACAGAG--AAATA----AAT----TACTTTACAACGTAACAATA-TAAAG-ATTT--GTTTAACA-G------T-------GAGTCA-AAATT----A---AAGCAT-ATA-----GC-GATATTCTAAAGC-TATTTTCAATCGTATAGGAATGGAAATGGTGACAA---CTGCTCT--ACAATCCAGGACGACCATTGATATCTCC---GTG--TCACTCAAG-CA-TG--ATGCTGACACTAACAG--A--AG-TTTTCTTCCAC--CC-GAC-ATT--TTCTC-TGCTCTTTC-TAC-GACTAC-AGAC-AT-GCAGAAAGGTAG-GGCA------AACAATGACCCAATGAAAT-G----------C-CATCTTCGTA-TGAAT---AGGCTTTAAA-TTTACTTCAG-AGCACTTTAAT-----TG--------A----------TACA--------AAGT-------CAATTT-A--TGCTGTGC--TCACTCGGAACAAG
gi|4 : tggatactttgggattTCAATGTA-TCCTGCAAAAGGATGCCCAGGAAAATGG---TA---AGAAA-AGAG-TT-A-C-------TATATGTCAT---GTCA-TT-AGC--T-AGAGAAAAGT-ATGGAGTGTC----GCAAC-----AA--AA---AACAAATCTTG-----AAAAAATTAT-GGTTGTT---CGCAA-AGACTTTGTCCACCCAAGCTCGGATTCTAGGTAAAT--CTTGTGA-AGTTAAACTG-CGATATCC-ATCACATGGATAC-TGGG-ATGTCAGAACTAACTGT--GTGTTGT--AAAAAGGAGAAAT-TTATCCTACATTAAAT-AA-ACAT-----GTTTGAG-AATTTA-CGAT--ATAA---------CCATGTGGACCATGCATTC--G--AAA---AA--AAATT----A
gi|4 : ---TC-------GAAAAA-AAA-TTACAACTTAAACATTAGG-----ATCGGCGTGTTGA-GTAATTTTTGA---GTATTGCTGTGAA-GTTGAAACAACACCGGCGCC--ACACTTCAG-ATGATCGAAAACATTTCC---GC---TCACTGAGAACA-TGTTAGGGCGATATTAACAGGGA--CG-TTTACCTCCAA--GA-GAC-ACT--CTTTCCTGCTTCATCCTACCAACTCCGATTC-ACAGCATAAAGGTAA-AGAT------AGTAC-GA---AATACAATTG----------C-CCTGTTGACA-AAGATGGAAGGTTAGAT--TTTACTTTGC-AGTAACTTAGTATTC-TA--------A---------CTGTATT------ATGCCATTGAAAAATTTGA--TATTGTGC--TCACACG---CAAGAATGTGATATAGGC-TATAAT-TTTTGGAACAGCATT-TTTCGTTATATTGC-ATA-T--A-----AA--AACAGTT-AATAACCTCATCTAACGAAGATTACTTACATTGTAT-ATTTATAcaacttaaacattaggatcggcgtgttgagtaatttttgagtattgctgtgaagttgaaacaacaccggcgccacacttcagatgatcgaaaacatttccgctcactgagaacatgttagggcgatattaacagggacgtttacctccaagagacactctttcctgcttcatcctaccaactccgattcacagcataaaggtaaagatagtacgaaatacaattgccctgttgacaaagatggaaggttagattttactttgcagtaacttagtattctaactgtattatgccattgaaaaatttgatattgtgctcacacgcaagaatgtgatataggctataatttttggaacagcatttttcgttatattgcatataaaaacagttaataacctcatctaacgaagattacttacattgtatatttata
gi|5 : tcaatgtatcctgcaaaaggatgcccaggaaaatggtaagaaaagagttactatatgtcatgtcattagctagagaaaagtatggagtgtcgcaacaaaaaacaaatcttgaaaaaattatggttgttcgcaaagactttgtccacccaagctcggattctaggtaaatcttgtgaagttaaactgcgatatccatcacatggatactgggatgtcagaactaactgtgtgttgtaaaaaggagaaatttatcctacattaaataaacatgtttgagaatttacgatataaccatgtggaccatgcatTTAA-ATCG-TA-GCCTGTGAGCTTGGGTATTTTGGGAAAACTTGTAATGAGCTATGTCTATATC-CCTCCTTTGGGAAAGGATGCCAGGCA-ATCTGC-AACTGCTCCAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---TA---AGAAAGAGT---T-A-C-TA--TATGTATGT---------A-TTTAGC--TTAGAGAAAAGT-ATGGAGTGTC----GCA-C-----AA--AACAAA-----TCTT-------GAAAATTATTGGTTGTTT-GC-----AGA--TTGTCC-ACCAGGGT---ATT-TAGGTAAAT--CTTGTGA-AGTTAAA-TGCCGATATCC-ATCACATGG---TATGGG-ATGTCAGAA-TAACTGT--GTG-TGT--AAAAAGGAGAAATGTTATCCTACATTAAAT-AA-ACAT-----GTTTGAA-AATTTA-CGAT--ATAA---------CCATGTGAC--ATGCATTC--G--AAA---AA--AAATT----AA
gi|5 : c--AAATA----AAC---ATGTTTGAAAATTT-ACGATA-TAA-----CC--ATGTGACATGCA---TTCGAAAAAAAATTA-AAA-T----A---AACCAT-AGG-----AT-GGCGTGTTGAAGTA-ATTTTTGAAGGTATTGCTGTGAAGGTGGAAACAACACCGGCGCC--ACAATCCAGGATGATCGAAAACATTTCC---GTC--TCACTGAGA-CA-TG--AGGCGCATATTAACAG--A--CG-TTTACCTCCAA--GA-GAC-ACC--TTTCC-TGCTTCATC-TAC-AACTCC-ATTC-AC-ACATAAAGGTAA-AT--------AGTAC-GA---AATACAAT-G----------C-CCTGTTGACA-AAGATG--AAGGTAGACT-TTTACTTTGGCAT-AACTTAGTATTC-TA--------A---------CTGTATTATTGCCATGA-------AAATTG-A--TATTGTGC--TCACACGG--CAAGAATaataaaccataggatggcgtgttgaagtaatttttgaaggtattgctgtgaaggtggaaacaacaccggcgccacaatccaggatgatcgaaaacatttccgtctcactgagacatgaggcgcatattaacagacgtttacctccaagagacacctttcctgcttcatctacaactccattcacacataaaggtaaatagtacgaaatacaatgccctgttgacaaagatgaaggtagacttttactttggcataacttagtattctaactgtattattgccatgaaaattgatattgtgctcacacggcaagaat
gi|6 : cttaaatcgtagcctgtgagcttgggtattttgggaaaacttgtaatgagctatgtctatatccctcctttgggaaaggatgccaggcaatctgcaactgctccagagatcaatgtaatcctgcaaaaggatgcccagaaaatggtaagaaagagttactatatgtatgtatttagcttagagaaaagtatggagtgtcgcacaaaacaaatcttgaaaattattggttgtttgcagattgtccaccagggtatttaggtaaatcttgtgaagttaaatgccgatatccatcacatggtatgggatgtcagaataactgtgtgtgtaaaaaggagaaatgttatcctacattATATTG-TA-GTCTGTCAAATTTTGTATGCTCGGAAAGATTGTGCACAGCAATGTCCTT-TCGCCTCTTTTGGGATGATATATCAGACATAT-TGCAAAATATCGTAGAGATCAATGTAATCCTGCAAAAGTATGCACAG-AAAATTG---CA---AGACAGAGTGTTT-A-TATAGATATATATGTCATTG-GAAA-TTTAAC--GTAGAGACA-GC-CTGAAATATT----GCA-C-----AAGGATA--A-----TCTTC-------AAAATGATTGATTGTTT-ACGCTCTAGA--CTGTCC-GCCGGGTT---ATT-TTGGTGACT--CCTGTAA-AATTAAA-TG
gi|7 : tgttataaaataaacacctacttcactattctaatgaagtatattagtatatattaacatttatagtttataattgcatgtagatgttttattaccaagacattagtgagtgcaaagtggatacttcgaccacattaacatagtaatatattcattatatttgtgttcacaggccttccaatggttacagatgggatagaaacaacgacaaatgtctccgtatgtactggaatatgaaaatgaaaagattttttttatatccatgaatggtttcttgattttaatgtgaaaataaccacaaattttgttttgttaaaaatattcaaatatatcacggcatatcttttgtcggcataatttgaggtaaaatatggcttTTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TG
gi|8 : tcttgtaataaaataaacatccacttcaccatcttgatgaagtagattagcatataataacatatatagtttatgattgtatgtagctgttttattaccaagaaaataatggggggggggggagtgcaaagtggacatcttcgaccatagtagttataaaatataattcatttatttgtgttgacaggccttgcagaagttgcaattggttacagatgggagagaaggatacacaacacagggttactctgtatgtattcggaatatgaaaatgacaatatttgtatatctattaatgaaattgttttgtgtaaaaagattcaaataattattcacaggcatatctttttgtcggcatagtgttgccggtaaatgtggcTGTTT-ATATTCTAGA--ATGTCC-CCCACGCT----TT-TAGGT-ACT--CTTGTGCCAGTTAAA-TGCCGGC--CC-AGCATATGG---TGTGGATCTGTCAGGG-TACATG---TCG-TGTTGAAAAAGGAGAAGTGTGATC-TGC---AAAT-GGGAT-TCA-AGGTGTGAATGTTTTATGATTGAACAG---TTTCTTCTATG------ATGGATGA--GAGTAACAGAAGAAAATTGATAAACTGTGTACTTTACATTTT-GCATT--CAAACCATTC--AGTTAA---G-A---AT-------AAATAA-GA--T----G---AAATAT-ACA-----AT-GAC-TGTTAAAGTGTATTTTGAAAGGTATTGGTTTG-ACGTGGTAACAACACTTGCTCCGAAC-ATCCAGAATGACCCATAATATT-CC---GTC--TCACTGAGA-CAGTA--AT-CTGACACTAACAG--AGACG-TTCTT----AC--GA-GAAGACT--TCATC-TGCTCTATC-TAC-ATCTCC-AGCT-GT-GCATAAAGGTAA-ACAC------A--AA-GA---AAAAGAAA-G----------C-CTCATTTACAGCAGATG--AGGTTA-AAC-ATTATTTCGG---CA--TCAGTATTTGTT--------A---------TTGCA--------ATGT-------AAATTT-AACGATCAC-CAATCACACGGC-CAGGGATGT
gi|9 : CAAGG--AAATT----AAC---TTACTTTACATTTT-GCAAAA-TAAAC-ATTTTTATTTATTA-A-AAATTT-------AAATAG-AAA-T----A---AAACAT-ACG-----AT-GACGAATAAAAGT-TGTTTTGAAAGGTATTGGTGTGGACATGGTAACAAGAACTACTCC--ACGATCCAGGATGACGATTGATATTTCTGGGGTGGACTACTGAGA-CA--G--GTCCTGCCACGAACAG--A--AG-TTTTATT--AT--GGTGAC-ACTGGTAATC-TGCTCTA-A-TAC-GACTTC--GTCAACAGCAG-AAGGTAA-AGAA------AAC----A---AATACAAT-A----------CAAACGTTC-CA-AAGAT-----AGTAAAACATTTACTTC-G-ATCAGCTTAATATTT-TA--------AACTGTATTGCTGCA--------ATGT-------TATTTT-A--TATCGCAC--CCa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTCATTGTATTTGTGTTTACAGGCCTTTTAAATGTTGCTATGGTTACAGATGGGATAGAAATACCGAAACATTTCTCCATATGTACTGGAATATGGAAATGAGAATATCAGTGTACACATTAATGATTTCCTAATTTTGATATGATATCATGCGAAAAAAAAAACCCAGTTATTGTTTTAGTTAAAGACCCAAATATATCACTGCACATCTGTGTTCAATACTCAGCAAGGTATGAGGAAAAATGTAGTTCATA
Unaligned ( gi|13 ): ATATTCATGAATGTAATGGATATACAATTCTAATTTTAAGTAGATGAGTAAATATAATGACATCTAAAGTACATGGCTGTATGTAGATGATTTATTGCCAAAACAATTATAAGTGGAAAGAGGCCTGTTCAGCCATATGTCATAGTAAGATTTTATGTTTACAGACCTTTTAAATGTTGCAGTGGTTACAGATGG
Unaligned ( gi|15 ): GTTGCAGTGGTTACAGATGGGATAGAAATACTGAAAAATGTCTCCGTACGTATTTGAATATACAACGAAGAATATTTGTATATTCTTTAACTCTAACATGATATCATG
Unaligned ( gi|16 ): CGATTTTATATATGCTTTTAGGTCTTTCAAATGTTGCAGTGGTTACAAATGGGATAGGGATACTAAACTTTGTACCCGTAAGTA
Alignments
lowQualScore : 1 1 222222 333333333333333 1 1111 11111 2222222222222222222222 111 111 33333333333333333333333333 1111 777777777777777777777777777777777777 11111111 11111 11 111 1 3333333333333333333 2222222222222 111 33333333333333333333333 22222222 1111111 11 11 1 333 222 22 3333333333 11 11 1 11 22222222 22222 1 222 1 1 1 1
lowQualScore : 6 8 8 0 11 5 0 1 6 6 1 0 4 4 5 5 0 6 0 3 5 888 888 1 111111 3 3 444444444444444 66 0 5 0 0000 5 22222 66 8888888888888888888888 0 0 4 22 3 555 4 777 4 55 4 4 0 5 0 888 0 5 5 11 999 5 66 1 0 777 5 5 0 6666 0 66 5 9999999 666 55555555555555555555555555 66 9999 7777 777 0 5 444444444444444444444444444444444444 666 5 22222222 5 22222 5 3 77 1 0 5 2 2 66 7 44 0 888 111 5 5 66 1 66 66 5 2 3 888 5 5 66 0 5 5 66 5 1 5 0 1 5 2222222222222222222 5555555555555 5 1 1 88 66 0 999 1 5 222 1 6666 5 3 66666666666666666666666 55555555 6666666 5 66 1 77 55 1 77 0 000 111 6 0 11 3 0000000000 33 11 0 33 3 11111111 1 11111 1 0 3 2 000 1 1 1 5 5 5 1 22 5
lowQualScore : . . . . .. . . . . . . . . . . . . . . . . ... ... . ...... . . ............... .. . . . .... . ..... .. ...................... . . . .. . ... . ... . .. . . . . . ... . . . .. ... . .. . . ... . . . .... . .. . ....... ... .......................... .. .... .... ... . . .................................... ... . ........ . ..... . . .. . . . . . .. . .. . ... ... . . .. . .. .. . . . ... . . .. . . . .. . . . . . . ................... ............. . . . .. .. . ... . . ... . .... . . ....................... ........ ....... . .. . .. .. . .. . ... ... . . .. . .......... .. .. . .. . ........ . ..... . . . . ... . . . . . . . .. .
lowQualScore : 0 0 0 6 22 0 8 0 7 7 0 4 0 1 0 7 7 6 2 6 0 888 888 0 111111 2 4 555555555555555 99 0 0 9 6666 0 55555 99 6666666666666666666666 1 9 0 11 5 888 0 000 0 55 0 0 2 0 4 888 2 0 0 22 111 0 99 0 2 555 0 0 2 6666 2 11 9 4444444 222 00000000000000000000000000 11 4444 6666 777 4 7 888888888888888888888888888888888888 111 0 22222222 0 55555 0 4 88 1 2 6 5 5 99 4 11 4 888 444 0 0 99 1 99 99 0 2 4 222 0 0 99 5 0 0 11 0 0 0 0 0 0 4444444444444444444 6666666666666 0 0 4 55 00 2 444 4 9 555 4 6666 4 2 00000000000000000000000 00000000 2222222 0 99 7 99 88 0 55 0 000 000 5 8 00 2 8888888888 88 00 0 88 2 11111111 0 77777 0 7 7 0 555 0 0 0 5 5 5 0 00 0
consensus : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTATCGTT--ACAAA--TTTCTTCTATG------ATGCATG--CG--TAACAGAG--AAATT----AAC---GTACTTTAC-ANTTTGCGATA-TAAA--ATTC--ATTT--AACA-G-A---TT-------GAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-GA---AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
Reference ( family-1834 ) : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTATCGTT--ACAAA--TTTCTTCTATG------ATGCATG--CG--TAACAGAG--AAATT----AAC---GTACTTTAC-ATTTTGCAATA-TAAA--ATTC--ATTT--AACA-G-A---TT-------GAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-GA---AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
gi|1 : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TGTCGGTATCC-AGCATATGG---CGTGGA-ATGCCAGGG-TACATGC--TCG-TGT--GACGAGGAGAAGTGTCGTCCTGC---AAAT-GG-ATGTCA-AGGTGTGAC-GTTTCATTATT--CCAAA--TTTCTTCTATG------ATGCATGCACG--TAACGGAG--AAATT----GAC---GTACTTTAC---------ATA-TAAG----TC--AT------CA--------T-------GAATAA-AAA-T----A---AAACAT-ACA-----AT-GACATGATAAAGTATATTTCG-AAGGTAATGGTATGGACGCAGTAACAACAGCTGCTCC--GAAGTCCACGATGACCACTGACATCTCC---GTA--TCACTGAGC-CA-TG--ATGCTGACATTAACAG--A--CG-TTTTCCTTCAC--GA-GAC-ACT--TTATC-TGCTGCATC-TAC-TATTCC-AGTC-AT-GCTTAAAGGTAACAGCATCCACCATTAA-AA---GAAAAAAA-G----------C-CTCGTTCACA-CAGACG--AGAGTATATC-TTTACTCTGG-ATCAGCTTAAT-----TA--------A---------TTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGGATGTAACGAA--C-TACAGTGATTTGGAACAATA-TCTTTTGCTAT-TTGCAATA-TACA-----GA--AAT-CTT-AAT--CTTC--CTAA--AACATT-C-TCCGTCGCATAAGTTATA---ATCAATGATCTTC-CGAGTAATCTTACTTAAATGTGTATTTCTAAATAGA-AGATAA
gi|10 : TGGGAGAGGATGCCATGTA-ATCTGC-AACTGCACTAGAAATCATTGTAATCCCACAAAAGGATGCCCTG-AAAATGGTTACATGTAGAATGAGTG----ACTATAAATATATGTG----------------A---TTAAGGACA-AC-GTGGGATGTT----GCA-C-----GA--AG---A-----TTATCT----TGAAAATGATTGGTTGTTT-ACGTTCTAAA--TTGTCC-CCCAGGCT---ATA-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGT---CGTAGA-ATGCAAGGG-CGTTTGT--TCA-TGT--GAAAAAGAAAAGTGTGATCCTGC---AAAT-GG-ATGTCG-AGGTGTGAA-G-TTTATCGT-----AAACTTTTATTCTATT------ATGCATG--TG--
gi|11 : --ATTT--ATTT--AACA---A---T---------AATGAGAAA-T----A---AAACAT-ACG-----AT-GGCGTGTTAAAGTA-ATTTTGAAAGGTAATGGAATGGAATCGGTAACAAGAGCTGCTCC--ACGATAGATGATGGCCATTGCTATTTCC---ATG--CTACCTAGA-CA-TG--CTGCTGACATTAGCAG--A--CG-CTTTCCTTCTA--GA-GAC-AAT--GTATC-TCATCTATC-TAC-GACTAC-AAAC-AT-GTGGAAAGGTAG-AAAA------AATA---T---AATACAA-------------C-CTC---TGCA-TAAATG--ATAATAAGCA-TTTTCCTCGA-ATCAGCTTGGTATTC-TAATTCTTTTA---------TTGCA--------ATGT-------AATTTT-A--T
gi|14 : GTTGTTTTA---TCAAGA--ATGTCT-ACCAGGAT---ACA-CAGG-GACCAACT-GTGA-ACTTCAA-TGTCGGTATCCAAGC-TTTGG---GGTCGG-CTGTCAACA-GAAATGCAATTG-TAC--GAAA--GACAATTGCCATGTT-C---AAACGGG-ATG-CATTGGTATG-G-GATATATC-TT--AC-GA--TTTC
gi|17 : aaaatTAGGCCTATAAT---TTGGAACAGCA-TATTTCGTTAT-ATGCAATA-T--A-----AAACAGT-TAT-AAC--CTTC--atttcgtgt
gi|2 : gataTTAAAATTGGTAAGTCTGGTAGCTTGGGTAT-TTTGG---GACTGTTTACAGCAATGTCGAT-TCCCCTCGTTTGGGAGAGGATGCCAGGCA-ATCTGC-AACTGCTCTAGAGATCAATGTAATCACGCAAACGGATGTCCAG-AAAATGG---TA---AGAATGCGTG----ACTATAAATATATATG--ATTAAGAAA-TG-AAC--TTGGAGACA-GC-ATGGAATGTT----GTT-C-----AA--AT---A-----TTATCT------------------TGTTT-ACGTTATAGA--TTGTCC-CCCAGGCT---ATG-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGG---CGTGGA-ATGTCAGGA-TACATGC--TTG-TGT--GAAAAGGAGAAGTGTCATCCTGG---AAAT-GG-ATGTCA-AGGTAAGAA-GTTTTATTATT--ACAAA--GTTCTTCTA---------------------------GG--GAATT----AAA---ATACTTCAC-ATCTTGTAATATTAAC--ATTT--ATTT--AATA-G-A-------------AAC---AAA-T----A---AAACAT-ACGATACAAT-GACTTGTGAAAGTA-ATTTTGAAAGATATTGGTATGGACGTGGTAACAACACCTGATCC--ACTATCCCGGATGACCATTGGTTTAACC---GTG--TCACTTAGG-CA-TA--TTGCTGAAAATAGCAA--A--CGTTTTTCTTCTACTAGA-GAC-ACT--TTATC-TACTCTATC-TAC-AACTCC-AGAC-GT-ACAGAAAGGTAA-CGAA------AAGA---A---AATACAAT-GTGTACTAGCAC-AACGTTTAC--CA-ATG--AGAGTGAACT-TTTCC------AT-AACT--GTATT------------A---------CTGCA--------AGGT-------AAATTA-A--CATCACAC--TCACACGG--CAAGAATGTTACGTA--C-TACAAT-G---GGAATAATA-T-GTT-GGCATCATGCAATATT--ATACATAA--TAT-GTTGAAT--CT-------AC-AAAA--GC-TGTATAATATGAGTTCTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAAatcta
gi|3 : GATTGTGCTTATCAATGTCCCT-TCCCCTCCTATGGAAAGGAATGCCAA-CTCGTGTGT-AACTGTTCTAAAGGCCAATGTAACCATGTAAAAGGATGCTCAA-AAAGTGG---TA---AGAGAGA----TT-G-TATAGGTAAAT---TAATT----AA-TT-AATGATT-GATACA-ACCATGGC-TGTTTGATATA-CTTTAAAA--ATTCTA-----TTTTATTTAAAAAAAAATATT-----TTT-ACATTCAAGT--ATGCCC-TCCGGGTT---ATT-CAGATGACT--TTTGTGA-ATTTGAA-TGCCGTTATCC-AAATTTTGG---TATTGG-ATGTCAGAA-TGAATGC--TTG-TGT--GACAAAGAGAAGTGTGATCCTGC---AAAT-GG-ATGCCA-AGGTGTGAG-GTTTTATTGAT--ACAAA--TTCCCTCTCT--------TG--TA--CG--TAACAGAG--AAATA----AAT----TACTTTACAACGTAACAATA-TAAAG-ATTT--GTTT--AACA-G------T-------GAGTCA-AAATT----A---AAGCAT-ATA-----GC-GATATTCTAAAGC-TATTTTCAATCGTATAGGAATGGAAATGGTGACAA---CTGCTCT--ACAATCCAGGACGACCATTGATATCTCC---GTG--TCACTCAAG-CA-TG--ATGCTGACACTAACAG--A--AG-TTTTCTTCCAC--CC-GAC-ATT--TTCTC-TGCTCTTTC-TAC-GACTAC-AGAC-AT-GCAGAAAGGTAG-GGCA------AACAATGACCCAATGAAAT-G----------C-CATCTTCGTA-TGAAT---AGGCTTTAAA-TTTACTTCAG-AGCACTTTAAT-----TG--------A----------TACA--------AAGT-------CAATTT-A--TGCTGTGC--TCACTCGGAACAAG
gi|4 : tggatactttgggattTCAATGTA-TCCTGCAAAAGGATGCCCAGGAAAATGG---TA---AGAAA-AGAG-TT-A-C-------TATATGTCAT---GTCA-TT-AGC--T-AGAGAAAAGT-ATGGAGTGTC----GCAAC-----AA--AA---AACAAATCTTG-----AAAAAATTAT-GGTTGTT---CGCAA-AGACTTTGTCCACCCAAGCTCGGATTCTAGGTAAAT--CTTGTGA-AGTTAAACTG-CGATATCC-ATCACATGGATAC-TGGG-ATGTCAGAACTAACTGT--GTGTTGT--AAAAAGGAGAAAT-TTATCCTACATTAAAT-AA-ACAT-----GTTTGAG-AATTTA-CGAT--ATAA---------CCATGTGGACCATGCATT--CG--AAA---AA--AAATT----A
gi|4 : --AAATA----AAC---ATGTTTGAG-AATTTACGATA-TAA-----CC--ATGTGGACCATGCA---TTC------GAAAAA-AAA-TTACAACTTAAACATTAGG-----ATCGGCGTGTTGA-GTAATTTTTGA---GTATTGCTGTGAA-GTTGAAACAACACCGGCGCC--ACACTTCAG-ATGATCGAAAACATTTCC---GC---TCACTGAGAACA-TGTTAGGGCGATATTAACAGGGA--CG-TTTACCTCCAA--GA-GAC-ACT--CTTTCCTGCTTCATCCTACCAACTCCGATTC-ACAGCATAAAGGTAA-AGAT------AGTAC-GA---AATACAATTG----------C-CCTGTTGACA-AAGATGGAAGGTTAGAT--TTTACTTTGC-AGTAACTTAGTATTC-TA--------A---------CTGTATT------ATGCCATTGAAAAATTTGA--TATTGTGC--TCACACG---CAAGAATGTGATATAGGC-TATAAT-TTTTGGAACAGCATT-TTTCGTTATATTGC-ATA-T--A-----AA--AACAGTT-AATAACCTCATCTAACGAAGATTACTTACATTGTAT-ATTTATAcaacttaaacattaggatcggcgtgttgagtaatttttgagtattgctgtgaagttgaaacaacaccggcgccacacttcagatgatcgaaaacatttccgctcactgagaacatgttagggcgatattaacagggacgtttacctccaagagacactctttcctgcttcatcctaccaactccgattcacagcataaaggtaaagatagtacgaaatacaattgccctgttgacaaagatggaaggttagattttactttgcagtaacttagtattctaactgtattatgccattgaaaaatttgatattgtgctcacacgcaagaatgtgatataggctataatttttggaacagcatttttcgttatattgcatataaaaacagttaataacctcatctaacgaagattacttacattgtatatttata
gi|5 : tcaatgtatcctgcaaaaggatgcccaggaaaatggtaagaaaagagttactatatgtcatgtcattagctagagaaaagtatggagtgtcgcaacaaaaaacaaatcttgaaaaaattatggttgttcgcaaagactttgtccacccaagctcggattctaggtaaatcttgtgaagttaaactgcgatatccatcacatggatactgggatgtcagaactaactgtgtgttgtaaaaaggagaaatttatcctacattTTAA-ATCG-TA-GCCTGTGAGCTTGGGTATTTTGGGAAAACTTGTAATGAGCTATGTCTATATC-CCTCCTTTGGGAAAGGATGCCAGGCA-ATCTGC-AACTGCTCCAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---TA---AGAAAGAGT---T-A-C-TA--TATGTATGT---------A-TTTAGC--TTAGAGAAAAGT-ATGGAGTGTC----GCA-C-----AA--AACAAA-----TCTT-------GAAAATTATTGGTTGTTT-GC-----AGA--TTGTCC-ACCAGGGT---ATT-TAGGTAAAT--CTTGTGA-AGTTAAA-TGCCGATATCC-ATCACATGG---TATGGG-ATGTCAGAA-TAACTGT--GTG-TGT--AAAAAGGAGAAATGTTATCCTACATTAAAT-AA-ACAT-----GTTTGAA-AATTTA-CGAT--ATAA---------CCATGTGAC--ATGCATT--CG--AAA---AA--AAATT----AA
gi|5 : c--AAATA----AAC---ATGTTTGAA-AATTTACGATA-TAA-----CC--ATGT--GACATGCA---TTCGAAAAAAAATTA-AAA-T----A---AACCAT-AGG-----AT-GGCGTGTTGAAGTA-ATTTTTGAAGGTATTGCTGTGAAGGTGGAAACAACACCGGCGCC--ACAATCCAGGATGATCGAAAACATTTCC---GTC--TCACTGAGA-CA-TG--AGGCGCATATTAACAG--A--CG-TTTACCTCCAA--GA-GAC-ACC--TTTCC-TGCTTCATC-TAC-AACTCC-ATTC-AC-ACATAAAGGTAA-AT--------AGTAC-GA---AATACAAT-G----------C-CCTGTTGACA-AAGATG--AAGGTAGACT-TTTACTTTGGCAT-AACTTAGTATTC-TA--------A---------CTGTATTATTGCCATGA-------AAATTG-A--TATTGTGC--TCACACGG--CAAGAATaataaaccataggatggcgtgttgaagtaatttttgaaggtattgctgtgaaggtggaaacaacaccggcgccacaatccaggatgatcgaaaacatttccgtctcactgagacatgaggcgcatattaacagacgtttacctccaagagacacctttcctgcttcatctacaactccattcacacataaaggtaaatagtacgaaatacaatgccctgttgacaaagatgaaggtagacttttactttggcataacttagtattctaactgtattattgccatgaaaattgatattgtgctcacacggcaagaat
gi|6 : cttaaatcgtagcctgtgagcttgggtattttgggaaaacttgtaatgagctatgtctatatccctcctttgggaaaggatgccaggcaatctgcaactgctccagagatcaatgtaatcctgcaaaaggatgcccagaaaatggtaagaaagagttactatatgtatgtatttagcttagagaaaagtatggagtgtcgcacaaaacaaatcttgaaaattattggttgtttgcagattgtccaccagggtatttaggtaaatcttgtgaagttaaatgccgatatccatcacatggtatgggatgtcagaataactgtgtgtgtaaaaaggagaaatgttatcctacattATATTG-TA-GTCTGTCAAATTTTGTATGCTCGGAAAGATTGTGCACAGCAATGTCCTT-TCGCCTCTTTTGGGATGATATATCAGACATAT-TGCAAAATATCGTAGAGATCAATGTAATCCTGCAAAAGTATGCACAG-AAAATTG---CA---AGACAGAGTGTTT-A-TATAGATATATATGTCATTG-GAAA-TTTAAC--GTAGAGACA-GC-CTGAAATATT----GCA-C-----AAGGATA--A-----TCTTC-------AAAATGATTGATTGTTT-ACGCTCTAGA--CTGTCC-GCCGGGTT---ATT-TTGGTGACT--CCTGTAA-AATTAAA-TG
gi|7 : tgttataaaataaacacctacttcactattctaatgaagtatattagtatatattaacatttatagtttataattgcatgtagatgttttattaccaagacattagtgagtgcaaagtggatacttcgaccacattaacatagtaatatattcattatatttgtgttcacaggccttccaatggttacagatgggatagaaacaacgacaaatgtctccgtatgtactggaatatgaaaatgaaaagattttttttatatccatgaatggtttcttgattttaatgtgaaaataaccacaaattttgttttgttaaaaatattcaaatatatcacggcatatcttttgtcggcataatttgaggtaaaatatggcttTTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TG
gi|8 : tcttgtaataaaataaacatccacttcaccatcttgatgaagtagattagcatataataacatatatagtttatgattgtatgtagctgttttattaccaagaaaataatggggggggggggagtgcaaagtggacatcttcgaccatagtagttataaaatataattcatttatttgtgttgacaggccttgcagaagttgcaattggttacagatgggagagaaggatacacaacacagggttactctgtatgtattcggaatatgaaaatgacaatatttgtatatctattaatgaaattgttttgtgtaaaaagattcaaataattattcacaggcatatctttttgtcggcatagtgttgccggtaaatgtggcTGTTT-ATATTCTAGA--ATGTCC-CCCACGCT----TT-TAGGT-ACT--CTTGTGCCAGTTAAA-TGCCGGC--CC-AGCATATGG---TGTGGATCTGTCAGGG-TACATG---TCG-TGTTGAAAAAGGAGAAGTGTGATC-TGC---AAAT-GGGAT-TCA-AGGTGTGAATGTTTTATGATTGAACAG---TTTCTTCTATG------ATGGATG--AGAGTAACAGAAGAAAATTGATAAACTGTGTACTTTAC-ATTTTGCATT--CAAACCATTC--AGTT--AA---G-A---AT-------AAATAA-GA--T----G---AAATAT-ACA-----AT-GAC-TGTTAAAGTGTATTTTGAAAGGTATTGGTTTG-ACGTGGTAACAACACTTGCTCCGAAC-ATCCAGAATGACCCATAATATT-CC---GTC--TCACTGAGA-CAGTA--AT-CTGACACTAACAG--AGACG-TTCTT----AC--GA-GAAGACT--TCATC-TGCTCTATC-TAC-ATCTCC-AGCT-GT-GCATAAAGGTAA-ACAC------A--AA-GA---AAAAGAAA-G----------C-CTCATTTACAGCAGATG--AGGTTA-AAC-ATTATTTCGG---CA--TCAGTATTTGTT--------A---------TTGCA--------ATGT-------AAATTT-AACGATCAC-CAATCACACGGC-CAGGGATGT
gi|9 : CAAGG--AAATT----AAC---TTACTTTAC-ATTTTGCAAAA-TAAAC-ATTTTTATTT--ATTA-A-AAATTT-------AAATAG-AAA-T----A---AAACAT-ACG-----AT-GACGAATAAAAGT-TGTTTTGAAAGGTATTGGTGTGGACATGGTAACAAGAACTACTCC--ACGATCCAGGATGACGATTGATATTTCTGGGGTGGACTACTGAGA-CA--G--GTCCTGCCACGAACAG--A--AG-TTTTATT--AT--GGTGAC-ACTGGTAATC-TGCTCTA-A-TAC-GACTTC--GTCAACAGCAG-AAGGTAA-AGAA------AAC----A---AATACAAT-A----------CAAACGTTC-CA-AAGAT-----AGTAAAACATTTACTTC-G-ATCAGCTTAATATTT-TA--------AACTGTATTGCTGCA--------ATGT-------TATTTT-A--TATCGCAC--CCa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTCATTGTATTTGTGTTTACAGGCCTTTTAAATGTTGCTATGGTTACAGATGGGATAGAAATACCGAAACATTTCTCCATATGTACTGGAATATGGAAATGAGAATATCAGTGTACACATTAATGATTTCCTAATTTTGATATGATATCATGCGAAAAAAAAAACCCAGTTATTGTTTTAGTTAAAGACCCAAATATATCACTGCACATCTGTGTTCAATACTCAGCAAGGTATGAGGAAAAATGTAGTTCATA
Unaligned ( gi|13 ): ATATTCATGAATGTAATGGATATACAATTCTAATTTTAAGTAGATGAGTAAATATAATGACATCTAAAGTACATGGCTGTATGTAGATGATTTATTGCCAAAACAATTATAAGTGGAAAGAGGCCTGTTCAGCCATATGTCATAGTAAGATTTTATGTTTACAGACCTTTTAAATGTTGCAGTGGTTACAGATGG
Unaligned ( gi|15 ): GTTGCAGTGGTTACAGATGGGATAGAAATACTGAAAAATGTCTCCGTACGTATTTGAATATACAACGAAGAATATTTGTATATTCTTTAACTCTAACATGATATCATG
Unaligned ( gi|16 ): CGATTTTATATATGCTTTTAGGTCTTTCAAATGTTGCAGTGGTTACAAATGGGATAGGGATACTAAACTTTGTACCCGTAAGTA
Alignments
lowQualScore : 1 1 222222 333333333333333 1 1111 11111 2222222222222222222222 111 111 33333333333333333333333333 1111 777777777777777777777777777777777777 11111111 11111 11 111 1 3333333333333333333 2222222222222 111 33333333333333333333333 22222222 1111111 11 11 1 333 222 22 3333333333 11 11 1 11 22222222 22222 1 222 1 1 1 1
lowQualScore : 6 8 8 0 11 5 0 1 6 6 1 0 4 4 5 5 0 6 0 3 5 888 888 1 111111 3 3 444444444444444 66 0 5 0 0000 5 22222 66 8888888888888888888888 0 0 4 22 3 555 4 777 4 55 4 4 0 5 0 888 0 5 5 11 999 5 66 1 0 777 5 5 0 6666 0 66 5 9999999 666 55555555555555555555555555 66 9999 7777 3 9999 5 444444444444444444444444444444444444 666 5 22222222 5 22222 5 3 77 1 0 5 2 2 66 7 44 0 888 111 5 5 66 1 66 66 5 2 3 888 5 5 66 0 5 5 66 5 1 5 0 1 5 2222222222222222222 5555555555555 5 1 1 88 66 0 999 1 5 222 1 6666 5 3 66666666666666666666666 55555555 6666666 5 66 1 77 55 1 77 0 000 111 6 0 11 3 0000000000 33 11 0 33 3 11111111 1 11111 1 0 3 2 000 1 1 1 5 5 5 1 22 5
lowQualScore : . . . . .. . . . . . . . . . . . . . . . . ... ... . ...... . . ............... .. . . . .... . ..... .. ...................... . . . .. . ... . ... . .. . . . . . ... . . . .. ... . .. . . ... . . . .... . .. . ....... ... .......................... .. .... .... . .... . .................................... ... . ........ . ..... . . .. . . . . . .. . .. . ... ... . . .. . .. .. . . . ... . . .. . . . .. . . . . . . ................... ............. . . . .. .. . ... . . ... . .... . . ....................... ........ ....... . .. . .. .. . .. . ... ... . . .. . .......... .. .. . .. . ........ . ..... . . . . ... . . . . . . . .. .
lowQualScore : 0 0 0 6 22 0 8 0 7 7 0 4 0 1 0 7 7 6 2 6 0 888 888 0 111111 2 4 555555555555555 99 0 0 9 6666 0 55555 99 6666666666666666666666 1 9 0 11 5 888 0 000 0 55 0 0 2 0 4 888 2 0 0 22 111 0 99 0 2 555 0 0 2 6666 2 11 9 4444444 222 00000000000000000000000000 11 4444 6666 0 6666 7 888888888888888888888888888888888888 111 0 22222222 0 55555 0 4 88 1 2 6 5 5 99 4 11 4 888 444 0 0 99 1 99 99 0 2 4 222 0 0 99 5 0 0 11 0 0 0 0 0 0 4444444444444444444 6666666666666 0 0 4 55 00 2 444 4 9 555 4 6666 4 2 00000000000000000000000 00000000 2222222 0 99 7 99 88 0 55 0 000 000 5 8 00 2 8888888888 88 00 0 88 2 11111111 0 77777 0 7 7 0 555 0 0 0 5 5 5 0 00 0
consensus : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTATCGTT--ACAAA--TTTCTTCTATG------ATGCATG--CG--TAACAGAG--AAATT----AAC---GTACTTTACANTTT-GCGATA-TAAA--ATTC--ATTT--AACA-G-A---TT-------GAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-GA---AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
Reference ( family-1834 ) : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTATCGTT--ACAAA--TTTCTTCTATG------ATGCATG--CG--TAACAGAG--AAATT----AAC---GTACTTTACANTTT-GCGATA-TAAA--ATTC--ATTT--AACA-G-A---TT-------GAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-GA---AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
gi|1 : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TGTCGGTATCC-AGCATATGG---CGTGGA-ATGCCAGGG-TACATGC--TCG-TGT--GACGAGGAGAAGTGTCGTCCTGC---AAAT-GG-ATGTCA-AGGTGTGAC-GTTTCATTATT--CCAAA--TTTCTTCTATG------ATGCATGCACG--TAACGGAG--AAATT----GAC---GTACTTTAC---------ATA-TAAG----TC--AT------CA--------T-------GAATAA-AAA-T----A---AAACAT-ACA-----AT-GACATGATAAAGTATATTTCG-AAGGTAATGGTATGGACGCAGTAACAACAGCTGCTCC--GAAGTCCACGATGACCACTGACATCTCC---GTA--TCACTGAGC-CA-TG--ATGCTGACATTAACAG--A--CG-TTTTCCTTCAC--GA-GAC-ACT--TTATC-TGCTGCATC-TAC-TATTCC-AGTC-AT-GCTTAAAGGTAACAGCATCCACCATTAA-AA---GAAAAAAA-G----------C-CTCGTTCACA-CAGACG--AGAGTATATC-TTTACTCTGG-ATCAGCTTAAT-----TA--------A---------TTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGGATGTAACGAA--C-TACAGTGATTTGGAACAATA-TCTTTTGCTAT-TTGCAATA-TACA-----GA--AAT-CTT-AAT--CTTC--CTAA--AACATT-C-TCCGTCGCATAAGTTATA---ATCAATGATCTTC-CGAGTAATCTTACTTAAATGTGTATTTCTAAATAGA-AGATAA
gi|10 : TGGGAGAGGATGCCATGTA-ATCTGC-AACTGCACTAGAAATCATTGTAATCCCACAAAAGGATGCCCTG-AAAATGGTTACATGTAGAATGAGTG----ACTATAAATATATGTG----------------A---TTAAGGACA-AC-GTGGGATGTT----GCA-C-----GA--AG---A-----TTATCT----TGAAAATGATTGGTTGTTT-ACGTTCTAAA--TTGTCC-CCCAGGCT---ATA-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGT---CGTAGA-ATGCAAGGG-CGTTTGT--TCA-TGT--GAAAAAGAAAAGTGTGATCCTGC---AAAT-GG-ATGTCG-AGGTGTGAA-G-TTTATCGT-----AAACTTTTATTCTATT------ATGCATG--TG--
gi|11 : --ATTT--ATTT--AACA---A---T---------AATGAGAAA-T----A---AAACAT-ACG-----AT-GGCGTGTTAAAGTA-ATTTTGAAAGGTAATGGAATGGAATCGGTAACAAGAGCTGCTCC--ACGATAGATGATGGCCATTGCTATTTCC---ATG--CTACCTAGA-CA-TG--CTGCTGACATTAGCAG--A--CG-CTTTCCTTCTA--GA-GAC-AAT--GTATC-TCATCTATC-TAC-GACTAC-AAAC-AT-GTGGAAAGGTAG-AAAA------AATA---T---AATACAA-------------C-CTC---TGCA-TAAATG--ATAATAAGCA-TTTTCCTCGA-ATCAGCTTGGTATTC-TAATTCTTTTA---------TTGCA--------ATGT-------AATTTT-A--T
gi|14 : GTTGTTTTA---TCAAGA--ATGTCT-ACCAGGAT---ACA-CAGG-GACCAACT-GTGA-ACTTCAA-TGTCGGTATCCAAGC-TTTGG---GGTCGG-CTGTCAACA-GAAATGCAATTG-TAC--GAAA--GACAATTGCCATGTT-C---AAACGGG-ATG-CATTGGTATG-G-GATATATC-TT--AC-GA--TTTC
gi|17 : aaaatTAGGCCTATAAT---TTGGAACAGCA-TATTTCGTTAT-ATGCAATA-T--A-----AAACAGT-TAT-AAC--CTTC--atttcgtgt
gi|2 : gataTTAAAATTGGTAAGTCTGGTAGCTTGGGTAT-TTTGG---GACTGTTTACAGCAATGTCGAT-TCCCCTCGTTTGGGAGAGGATGCCAGGCA-ATCTGC-AACTGCTCTAGAGATCAATGTAATCACGCAAACGGATGTCCAG-AAAATGG---TA---AGAATGCGTG----ACTATAAATATATATG--ATTAAGAAA-TG-AAC--TTGGAGACA-GC-ATGGAATGTT----GTT-C-----AA--AT---A-----TTATCT------------------TGTTT-ACGTTATAGA--TTGTCC-CCCAGGCT---ATG-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGG---CGTGGA-ATGTCAGGA-TACATGC--TTG-TGT--GAAAAGGAGAAGTGTCATCCTGG---AAAT-GG-ATGTCA-AGGTAAGAA-GTTTTATTATT--ACAAA--GTTCTTCTA---------------------------GG--GAATT----AAA---ATACTTCACATCTT-GTAATATTAAC--ATTT--ATTT--AATA-G-A-------------AAC---AAA-T----A---AAACAT-ACGATACAAT-GACTTGTGAAAGTA-ATTTTGAAAGATATTGGTATGGACGTGGTAACAACACCTGATCC--ACTATCCCGGATGACCATTGGTTTAACC---GTG--TCACTTAGG-CA-TA--TTGCTGAAAATAGCAA--A--CGTTTTTCTTCTACTAGA-GAC-ACT--TTATC-TACTCTATC-TAC-AACTCC-AGAC-GT-ACAGAAAGGTAA-CGAA------AAGA---A---AATACAAT-GTGTACTAGCAC-AACGTTTAC--CA-ATG--AGAGTGAACT-TTTCC------AT-AACT--GTATT------------A---------CTGCA--------AGGT-------AAATTA-A--CATCACAC--TCACACGG--CAAGAATGTTACGTA--C-TACAAT-G---GGAATAATA-T-GTT-GGCATCATGCAATATT--ATACATAA--TAT-GTTGAAT--CT-------AC-AAAA--GC-TGTATAATATGAGTTCTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAAatcta
gi|3 : GATTGTGCTTATCAATGTCCCT-TCCCCTCCTATGGAAAGGAATGCCAA-CTCGTGTGT-AACTGTTCTAAAGGCCAATGTAACCATGTAAAAGGATGCTCAA-AAAGTGG---TA---AGAGAGA----TT-G-TATAGGTAAAT---TAATT----AA-TT-AATGATT-GATACA-ACCATGGC-TGTTTGATATA-CTTTAAAA--ATTCTA-----TTTTATTTAAAAAAAAATATT-----TTT-ACATTCAAGT--ATGCCC-TCCGGGTT---ATT-CAGATGACT--TTTGTGA-ATTTGAA-TGCCGTTATCC-AAATTTTGG---TATTGG-ATGTCAGAA-TGAATGC--TTG-TGT--GACAAAGAGAAGTGTGATCCTGC---AAAT-GG-ATGCCA-AGGTGTGAG-GTTTTATTGAT--ACAAA--TTCCCTCTCT--------TG--TA--CG--TAACAGAG--AAATA----AAT----TACTTTACAACGTAACAATA-TAAAG-ATTT--GTTT--AACA-G------T-------GAGTCA-AAATT----A---AAGCAT-ATA-----GC-GATATTCTAAAGC-TATTTTCAATCGTATAGGAATGGAAATGGTGACAA---CTGCTCT--ACAATCCAGGACGACCATTGATATCTCC---GTG--TCACTCAAG-CA-TG--ATGCTGACACTAACAG--A--AG-TTTTCTTCCAC--CC-GAC-ATT--TTCTC-TGCTCTTTC-TAC-GACTAC-AGAC-AT-GCAGAAAGGTAG-GGCA------AACAATGACCCAATGAAAT-G----------C-CATCTTCGTA-TGAAT---AGGCTTTAAA-TTTACTTCAG-AGCACTTTAAT-----TG--------A----------TACA--------AAGT-------CAATTT-A--TGCTGTGC--TCACTCGGAACAAG
gi|4 : tggatactttgggattTCAATGTA-TCCTGCAAAAGGATGCCCAGGAAAATGG---TA---AGAAA-AGAG-TT-A-C-------TATATGTCAT---GTCA-TT-AGC--T-AGAGAAAAGT-ATGGAGTGTC----GCAAC-----AA--AA---AACAAATCTTG-----AAAAAATTAT-GGTTGTT---CGCAA-AGACTTTGTCCACCCAAGCTCGGATTCTAGGTAAAT--CTTGTGA-AGTTAAACTG-CGATATCC-ATCACATGGATAC-TGGG-ATGTCAGAACTAACTGT--GTGTTGT--AAAAAGGAGAAAT-TTATCCTACATTAAAT-AA-ACAT-----GTTTGAG-AATTTA-CGAT--ATAA---------CCATGTGGACCATGCATT--CG--AAA---AA--AAATT----A
gi|4 : --AAATA----AAC---ATGTTTGAGAATTT-ACGATA-TAA-----CC--ATGTGGACCATGCA---TTC------GAAAAA-AAA-TTACAACTTAAACATTAGG-----ATCGGCGTGTTGA-GTAATTTTTGA---GTATTGCTGTGAA-GTTGAAACAACACCGGCGCC--ACACTTCAG-ATGATCGAAAACATTTCC---GC---TCACTGAGAACA-TGTTAGGGCGATATTAACAGGGA--CG-TTTACCTCCAA--GA-GAC-ACT--CTTTCCTGCTTCATCCTACCAACTCCGATTC-ACAGCATAAAGGTAA-AGAT------AGTAC-GA---AATACAATTG----------C-CCTGTTGACA-AAGATGGAAGGTTAGAT--TTTACTTTGC-AGTAACTTAGTATTC-TA--------A---------CTGTATT------ATGCCATTGAAAAATTTGA--TATTGTGC--TCACACG---CAAGAATGTGATATAGGC-TATAAT-TTTTGGAACAGCATT-TTTCGTTATATTGC-ATA-T--A-----AA--AACAGTT-AATAACCTCATCTAACGAAGATTACTTACATTGTAT-ATTTATAcaacttaaacattaggatcggcgtgttgagtaatttttgagtattgctgtgaagttgaaacaacaccggcgccacacttcagatgatcgaaaacatttccgctcactgagaacatgttagggcgatattaacagggacgtttacctccaagagacactctttcctgcttcatcctaccaactccgattcacagcataaaggtaaagatagtacgaaatacaattgccctgttgacaaagatggaaggttagattttactttgcagtaacttagtattctaactgtattatgccattgaaaaatttgatattgtgctcacacgcaagaatgtgatataggctataatttttggaacagcatttttcgttatattgcatataaaaacagttaataacctcatctaacgaagattacttacattgtatatttata
gi|5 : tcaatgtatcctgcaaaaggatgcccaggaaaatggtaagaaaagagttactatatgtcatgtcattagctagagaaaagtatggagtgtcgcaacaaaaaacaaatcttgaaaaaattatggttgttcgcaaagactttgtccacccaagctcggattctaggtaaatcttgtgaagttaaactgcgatatccatcacatggatactgggatgtcagaactaactgtgtgttgtaaaaaggagaaatttatcctacattTTAA-ATCG-TA-GCCTGTGAGCTTGGGTATTTTGGGAAAACTTGTAATGAGCTATGTCTATATC-CCTCCTTTGGGAAAGGATGCCAGGCA-ATCTGC-AACTGCTCCAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---TA---AGAAAGAGT---T-A-C-TA--TATGTATGT---------A-TTTAGC--TTAGAGAAAAGT-ATGGAGTGTC----GCA-C-----AA--AACAAA-----TCTT-------GAAAATTATTGGTTGTTT-GC-----AGA--TTGTCC-ACCAGGGT---ATT-TAGGTAAAT--CTTGTGA-AGTTAAA-TGCCGATATCC-ATCACATGG---TATGGG-ATGTCAGAA-TAACTGT--GTG-TGT--AAAAAGGAGAAATGTTATCCTACATTAAAT-AA-ACAT-----GTTTGAA-AATTTA-CGAT--ATAA---------CCATGTGAC--ATGCATT--CG--AAA---AA--AAATT----AA
gi|5 : c--AAATA----AAC---ATGTTTGAAAATTT-ACGATA-TAA-----CC--ATGT--GACATGCA---TTCGAAAAAAAATTA-AAA-T----A---AACCAT-AGG-----AT-GGCGTGTTGAAGTA-ATTTTTGAAGGTATTGCTGTGAAGGTGGAAACAACACCGGCGCC--ACAATCCAGGATGATCGAAAACATTTCC---GTC--TCACTGAGA-CA-TG--AGGCGCATATTAACAG--A--CG-TTTACCTCCAA--GA-GAC-ACC--TTTCC-TGCTTCATC-TAC-AACTCC-ATTC-AC-ACATAAAGGTAA-AT--------AGTAC-GA---AATACAAT-G----------C-CCTGTTGACA-AAGATG--AAGGTAGACT-TTTACTTTGGCAT-AACTTAGTATTC-TA--------A---------CTGTATTATTGCCATGA-------AAATTG-A--TATTGTGC--TCACACGG--CAAGAATaataaaccataggatggcgtgttgaagtaatttttgaaggtattgctgtgaaggtggaaacaacaccggcgccacaatccaggatgatcgaaaacatttccgtctcactgagacatgaggcgcatattaacagacgtttacctccaagagacacctttcctgcttcatctacaactccattcacacataaaggtaaatagtacgaaatacaatgccctgttgacaaagatgaaggtagacttttactttggcataacttagtattctaactgtattattgccatgaaaattgatattgtgctcacacggcaagaat
gi|6 : cttaaatcgtagcctgtgagcttgggtattttgggaaaacttgtaatgagctatgtctatatccctcctttgggaaaggatgccaggcaatctgcaactgctccagagatcaatgtaatcctgcaaaaggatgcccagaaaatggtaagaaagagttactatatgtatgtatttagcttagagaaaagtatggagtgtcgcacaaaacaaatcttgaaaattattggttgtttgcagattgtccaccagggtatttaggtaaatcttgtgaagttaaatgccgatatccatcacatggtatgggatgtcagaataactgtgtgtgtaaaaaggagaaatgttatcctacattATATTG-TA-GTCTGTCAAATTTTGTATGCTCGGAAAGATTGTGCACAGCAATGTCCTT-TCGCCTCTTTTGGGATGATATATCAGACATAT-TGCAAAATATCGTAGAGATCAATGTAATCCTGCAAAAGTATGCACAG-AAAATTG---CA---AGACAGAGTGTTT-A-TATAGATATATATGTCATTG-GAAA-TTTAAC--GTAGAGACA-GC-CTGAAATATT----GCA-C-----AAGGATA--A-----TCTTC-------AAAATGATTGATTGTTT-ACGCTCTAGA--CTGTCC-GCCGGGTT---ATT-TTGGTGACT--CCTGTAA-AATTAAA-TG
gi|7 : tgttataaaataaacacctacttcactattctaatgaagtatattagtatatattaacatttatagtttataattgcatgtagatgttttattaccaagacattagtgagtgcaaagtggatacttcgaccacattaacatagtaatatattcattatatttgtgttcacaggccttccaatggttacagatgggatagaaacaacgacaaatgtctccgtatgtactggaatatgaaaatgaaaagattttttttatatccatgaatggtttcttgattttaatgtgaaaataaccacaaattttgttttgttaaaaatattcaaatatatcacggcatatcttttgtcggcataatttgaggtaaaatatggcttTTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TG
gi|8 : tcttgtaataaaataaacatccacttcaccatcttgatgaagtagattagcatataataacatatatagtttatgattgtatgtagctgttttattaccaagaaaataatggggggggggggagtgcaaagtggacatcttcgaccatagtagttataaaatataattcatttatttgtgttgacaggccttgcagaagttgcaattggttacagatgggagagaaggatacacaacacagggttactctgtatgtattcggaatatgaaaatgacaatatttgtatatctattaatgaaattgttttgtgtaaaaagattcaaataattattcacaggcatatctttttgtcggcatagtgttgccggtaaatgtggcTGTTT-ATATTCTAGA--ATGTCC-CCCACGCT----TT-TAGGT-ACT--CTTGTGCCAGTTAAA-TGCCGGC--CC-AGCATATGG---TGTGGATCTGTCAGGG-TACATG---TCG-TGTTGAAAAAGGAGAAGTGTGATC-TGC---AAAT-GGGAT-TCA-AGGTGTGAATGTTTTATGATTGAACAG---TTTCTTCTATG------ATGGATG--AGAGTAACAGAAGAAAATTGATAAACTGTGTACTTTACATTTT-GC-ATT-CAAACCATTC--AGTT--AA---G-A---AT-------AAATAA-GA--T----G---AAATAT-ACA-----AT-GAC-TGTTAAAGTGTATTTTGAAAGGTATTGGTTTG-ACGTGGTAACAACACTTGCTCCGAAC-ATCCAGAATGACCCATAATATT-CC---GTC--TCACTGAGA-CAGTA--AT-CTGACACTAACAG--AGACG-TTCTT----AC--GA-GAAGACT--TCATC-TGCTCTATC-TAC-ATCTCC-AGCT-GT-GCATAAAGGTAA-ACAC------A--AA-GA---AAAAGAAA-G----------C-CTCATTTACAGCAGATG--AGGTTA-AAC-ATTATTTCGG---CA--TCAGTATTTGTT--------A---------TTGCA--------ATGT-------AAATTT-AACGATCAC-CAATCACACGGC-CAGGGATGT
gi|9 : CAAGG--AAATT----AAC---TTACTTTACATTTT-GCAAAA-TAAAC-ATTTTTATTT--ATTA-A-AAATTT-------AAATAG-AAA-T----A---AAACAT-ACG-----AT-GACGAATAAAAGT-TGTTTTGAAAGGTATTGGTGTGGACATGGTAACAAGAACTACTCC--ACGATCCAGGATGACGATTGATATTTCTGGGGTGGACTACTGAGA-CA--G--GTCCTGCCACGAACAG--A--AG-TTTTATT--AT--GGTGAC-ACTGGTAATC-TGCTCTA-A-TAC-GACTTC--GTCAACAGCAG-AAGGTAA-AGAA------AAC----A---AATACAAT-A----------CAAACGTTC-CA-AAGAT-----AGTAAAACATTTACTTC-G-ATCAGCTTAATATTT-TA--------AACTGTATTGCTGCA--------ATGT-------TATTTT-A--TATCGCAC--CCa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTCATTGTATTTGTGTTTACAGGCCTTTTAAATGTTGCTATGGTTACAGATGGGATAGAAATACCGAAACATTTCTCCATATGTACTGGAATATGGAAATGAGAATATCAGTGTACACATTAATGATTTCCTAATTTTGATATGATATCATGCGAAAAAAAAAACCCAGTTATTGTTTTAGTTAAAGACCCAAATATATCACTGCACATCTGTGTTCAATACTCAGCAAGGTATGAGGAAAAATGTAGTTCATA
Unaligned ( gi|13 ): ATATTCATGAATGTAATGGATATACAATTCTAATTTTAAGTAGATGAGTAAATATAATGACATCTAAAGTACATGGCTGTATGTAGATGATTTATTGCCAAAACAATTATAAGTGGAAAGAGGCCTGTTCAGCCATATGTCATAGTAAGATTTTATGTTTACAGACCTTTTAAATGTTGCAGTGGTTACAGATGG
Unaligned ( gi|15 ): GTTGCAGTGGTTACAGATGGGATAGAAATACTGAAAAATGTCTCCGTACGTATTTGAATATACAACGAAGAATATTTGTATATTCTTTAACTCTAACATGATATCATG
Unaligned ( gi|16 ): CGATTTTATATATGCTTTTAGGTCTTTCAAATGTTGCAGTGGTTACAAATGGGATAGGGATACTAAACTTTGTACCCGTAAGTA
Alignments
lowQualScore : 1 1 222222 333333333333333 1 1111 11111 2222222222222222222222 111 111 33333333333333333333333333 1111 777777777777777777777777777777777777 11111111 11111 11 111 1 3333333333333333333 2222222222222 111 33333333333333333333333 22222222 1111111 11 11 1 333 222 22 3333333333 11 11 1 11 22222222 22222 1 222 1 1 1 1
lowQualScore : 6 8 8 0 11 5 0 1 6 6 1 0 4 4 5 5 0 6 0 3 5 888 888 1 111111 3 3 444444444444444 66 0 5 0 0000 5 22222 66 8888888888888888888888 0 0 4 22 3 555 4 777 4 55 4 4 0 5 0 888 0 5 5 11 999 5 66 1 0 777 5 5 0 6666 0 66 5 9999999 666 55555555555555555555555555 66 9999 7777 3 9999 5 444444444444444444444444444444444444 666 5 22222222 5 22222 5 3 77 1 0 5 2 2 66 7 44 0 888 111 5 5 66 1 66 66 5 2 3 888 5 5 66 0 5 5 66 5 1 5 0 1 5 2222222222222222222 5555555555555 5 1 1 88 66 0 999 1 5 222 1 6666 5 3 66666666666666666666666 55555555 6666666 5 66 1 77 55 1 77 0 000 111 6 0 11 3 0000000000 33 11 0 33 3 11111111 1 11111 1 0 3 2 000 1 1 1 5 5 5 1 22 5
lowQualScore : . . . . .. . . . . . . . . . . . . . . . . ... ... . ...... . . ............... .. . . . .... . ..... .. ...................... . . . .. . ... . ... . .. . . . . . ... . . . .. ... . .. . . ... . . . .... . .. . ....... ... .......................... .. .... .... . .... . .................................... ... . ........ . ..... . . .. . . . . . .. . .. . ... ... . . .. . .. .. . . . ... . . .. . . . .. . . . . . . ................... ............. . . . .. .. . ... . . ... . .... . . ....................... ........ ....... . .. . .. .. . .. . ... ... . . .. . .......... .. .. . .. . ........ . ..... . . . . ... . . . . . . . .. .
lowQualScore : 0 0 0 6 22 0 8 0 7 7 0 4 0 1 0 7 7 6 2 6 0 888 888 0 111111 2 4 555555555555555 99 0 0 9 6666 0 55555 99 6666666666666666666666 1 9 0 11 5 888 0 000 0 55 0 0 2 0 4 888 2 0 0 22 111 0 99 0 2 555 0 0 2 6666 2 11 9 4444444 222 00000000000000000000000000 11 4444 6666 0 6666 7 888888888888888888888888888888888888 111 0 22222222 0 55555 0 4 88 1 2 6 5 5 99 4 11 4 888 444 0 0 99 1 99 99 0 2 4 222 0 0 99 5 0 0 11 0 0 0 0 0 0 4444444444444444444 6666666666666 0 0 4 55 00 2 444 4 9 555 4 6666 4 2 00000000000000000000000 00000000 2222222 0 99 7 99 88 0 55 0 000 000 5 8 00 2 8888888888 88 00 0 88 2 11111111 0 77777 0 7 7 0 555 0 0 0 5 5 5 0 00 0
consensus : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTATCGTT--ACAAA--TTTCTTCTATG------ATGCATG--CG--TAACAGAG--AAATT----AAC---GTACTTTACANTTT-GCGATA-TAAA--ATTC--ATTT--AACA-G-A---TT-------GAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-GA---AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
Reference ( family-1834 ) : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTATCGTT--ACAAA--TTTCTTCTATG------ATGCATG--CG--TAACAGAG--AAATT----AAC---GTACTTTACANTTT-GCGATA-TAAA--ATTC--ATTT--AACA-G-A---TT-------GAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-GA---AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
gi|1 : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TGTCGGTATCC-AGCATATGG---CGTGGA-ATGCCAGGG-TACATGC--TCG-TGT--GACGAGGAGAAGTGTCGTCCTGC---AAAT-GG-ATGTCA-AGGTGTGAC-GTTTCATTATT--CCAAA--TTTCTTCTATG------ATGCATGCACG--TAACGGAG--AAATT----GAC---GTACTTTAC---------ATA-TAAG----TC--AT------CA--------T-------GAATAA-AAA-T----A---AAACAT-ACA-----AT-GACATGATAAAGTATATTTCG-AAGGTAATGGTATGGACGCAGTAACAACAGCTGCTCC--GAAGTCCACGATGACCACTGACATCTCC---GTA--TCACTGAGC-CA-TG--ATGCTGACATTAACAG--A--CG-TTTTCCTTCAC--GA-GAC-ACT--TTATC-TGCTGCATC-TAC-TATTCC-AGTC-AT-GCTTAAAGGTAACAGCATCCACCATTAA-AA---GAAAAAAA-G----------C-CTCGTTCACA-CAGACG--AGAGTATATC-TTTACTCTGG-ATCAGCTTAAT-----TA--------A---------TTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGGATGTAACGAA--C-TACAGTGATTTGGAACAATA-TCTTTTGCTAT-TTGCAATA-TACA-----GA--AAT-CTT-AAT--CTTC--CTAA--AACATT-C-TCCGTCGCATAAGTTATA---ATCAATGATCTTC-CGAGTAATCTTACTTAAATGTGTATTTCTAAATAGA-AGATAA
gi|10 : TGGGAGAGGATGCCATGTA-ATCTGC-AACTGCACTAGAAATCATTGTAATCCCACAAAAGGATGCCCTG-AAAATGGTTACATGTAGAATGAGTG----ACTATAAATATATGTG----------------A---TTAAGGACA-AC-GTGGGATGTT----GCA-C-----GA--AG---A-----TTATCT----TGAAAATGATTGGTTGTTT-ACGTTCTAAA--TTGTCC-CCCAGGCT---ATA-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGT---CGTAGA-ATGCAAGGG-CGTTTGT--TCA-TGT--GAAAAAGAAAAGTGTGATCCTGC---AAAT-GG-ATGTCG-AGGTGTGAA-G-TTTATCGT-----AAACTTTTATTCTATT------ATGCATG--TG--
gi|11 : --ATTT--ATTT--AACA---A---T---------AATGAGAAA-T----A---AAACAT-ACG-----AT-GGCGTGTTAAAGTA-ATTTTGAAAGGTAATGGAATGGAATCGGTAACAAGAGCTGCTCC--ACGATAGATGATGGCCATTGCTATTTCC---ATG--CTACCTAGA-CA-TG--CTGCTGACATTAGCAG--A--CG-CTTTCCTTCTA--GA-GAC-AAT--GTATC-TCATCTATC-TAC-GACTAC-AAAC-AT-GTGGAAAGGTAG-AAAA------AATA---T---AATACAA-------------C-CTC---TGCA-TAAATG--ATAATAAGCA-TTTTCCTCGA-ATCAGCTTGGTATTC-TAATTCTTTTA---------TTGCA--------ATGT-------AATTTT-A--T
gi|14 : GTTGTTTTA---TCAAGA--ATGTCT-ACCAGGAT---ACA-CAGG-GACCAACT-GTGA-ACTTCAA-TGTCGGTATCCAAGC-TTTGG---GGTCGG-CTGTCAACA-GAAATGCAATTG-TAC--GAAA--GACAATTGCCATGTT-C---AAACGGG-ATG-CATTGGTATG-G-GATATATC-TT--AC-GA--TTTC
gi|17 : aaaatTAGGCCTATAAT---TTGGAACAGCA-TATTTCGTTAT-ATGCAATA-T--A-----AAACAGT-TAT-AAC--CTTC--atttcgtgt
gi|2 : gataTTAAAATTGGTAAGTCTGGTAGCTTGGGTAT-TTTGG---GACTGTTTACAGCAATGTCGAT-TCCCCTCGTTTGGGAGAGGATGCCAGGCA-ATCTGC-AACTGCTCTAGAGATCAATGTAATCACGCAAACGGATGTCCAG-AAAATGG---TA---AGAATGCGTG----ACTATAAATATATATG--ATTAAGAAA-TG-AAC--TTGGAGACA-GC-ATGGAATGTT----GTT-C-----AA--AT---A-----TTATCT------------------TGTTT-ACGTTATAGA--TTGTCC-CCCAGGCT---ATG-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGG---CGTGGA-ATGTCAGGA-TACATGC--TTG-TGT--GAAAAGGAGAAGTGTCATCCTGG---AAAT-GG-ATGTCA-AGGTAAGAA-GTTTTATTATT--ACAAA--GTTCTTCTA---------------------------GG--GAATT----AAA---ATACTTCACATCTT-GTAATATTAAC--ATTT--ATTT--AATA-G-A-------------AAC---AAA-T----A---AAACAT-ACGATACAAT-GACTTGTGAAAGTA-ATTTTGAAAGATATTGGTATGGACGTGGTAACAACACCTGATCC--ACTATCCCGGATGACCATTGGTTTAACC---GTG--TCACTTAGG-CA-TA--TTGCTGAAAATAGCAA--A--CGTTTTTCTTCTACTAGA-GAC-ACT--TTATC-TACTCTATC-TAC-AACTCC-AGAC-GT-ACAGAAAGGTAA-CGAA------AAGA---A---AATACAAT-GTGTACTAGCAC-AACGTTTAC--CA-ATG--AGAGTGAACT-TTTCC------AT-AACT--GTATT------------A---------CTGCA--------AGGT-------AAATTA-A--CATCACAC--TCACACGG--CAAGAATGTTACGTA--C-TACAAT-G---GGAATAATA-T-GTT-GGCATCATGCAATATT--ATACATAA--TAT-GTTGAAT--CT-------AC-AAAA--GC-TGTATAATATGAGTTCTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAAatcta
gi|3 : GATTGTGCTTATCAATGTCCCT-TCCCCTCCTATGGAAAGGAATGCCAA-CTCGTGTGT-AACTGTTCTAAAGGCCAATGTAACCATGTAAAAGGATGCTCAA-AAAGTGG---TA---AGAGAGA----TT-G-TATAGGTAAAT---TAATT----AA-TT-AATGATT-GATACA-ACCATGGC-TGTTTGATATA-CTTTAAAA--ATTCTA-----TTTTATTTAAAAAAAAATATT-----TTT-ACATTCAAGT--ATGCCC-TCCGGGTT---ATT-CAGATGACT--TTTGTGA-ATTTGAA-TGCCGTTATCC-AAATTTTGG---TATTGG-ATGTCAGAA-TGAATGC--TTG-TGT--GACAAAGAGAAGTGTGATCCTGC---AAAT-GG-ATGCCA-AGGTGTGAG-GTTTTATTGAT--ACAAA--TTCCCTCTCT--------TG--TA--CG--TAACAGAG--AAATA----AAT----TACTTTACAACGTAACAATA-TAAAG-ATTT--GTTT--AACA-G------T-------GAGTCA-AAATT----A---AAGCAT-ATA-----GC-GATATTCTAAAGC-TATTTTCAATCGTATAGGAATGGAAATGGTGACAA---CTGCTCT--ACAATCCAGGACGACCATTGATATCTCC---GTG--TCACTCAAG-CA-TG--ATGCTGACACTAACAG--A--AG-TTTTCTTCCAC--CC-GAC-ATT--TTCTC-TGCTCTTTC-TAC-GACTAC-AGAC-AT-GCAGAAAGGTAG-GGCA------AACAATGACCCAATGAAAT-G----------C-CATCTTCGTA-TGAAT---AGGCTTTAAA-TTTACTTCAG-AGCACTTTAAT-----TG--------A----------TACA--------AAGT-------CAATTT-A--TGCTGTGC--TCACTCGGAACAAG
gi|4 : tggatactttgggattTCAATGTA-TCCTGCAAAAGGATGCCCAGGAAAATGG---TA---AGAAA-AGAG-TT-A-C-------TATATGTCAT---GTCA-TT-AGC--T-AGAGAAAAGT-ATGGAGTGTC----GCAAC-----AA--AA---AACAAATCTTG-----AAAAAATTAT-GGTTGTT---CGCAA-AGACTTTGTCCACCCAAGCTCGGATTCTAGGTAAAT--CTTGTGA-AGTTAAACTG-CGATATCC-ATCACATGGATAC-TGGG-ATGTCAGAACTAACTGT--GTGTTGT--AAAAAGGAGAAAT-TTATCCTACATTAAAT-AA-ACAT-----GTTTGAG-AATTTA-CGAT--ATAA---------CCATGTGGACCATGCATT--CG--AAA---AA--AAATT----A
gi|4 : --AAATA----AAC---ATGTTTGAGAATTT-ACGATA-TAA-----CC--ATGTGGACCATGCA---TTC------GAAAAA-AAA-TTACAACTTAAACATTAGG-----ATCGGCGTGTTGA-GTAATTTTTGA---GTATTGCTGTGAA-GTTGAAACAACACCGGCGCC--ACACTTCAG-ATGATCGAAAACATTTCC---GC---TCACTGAGAACA-TGTTAGGGCGATATTAACAGGGA--CG-TTTACCTCCAA--GA-GAC-ACT--CTTTCCTGCTTCATCCTACCAACTCCGATTC-ACAGCATAAAGGTAA-AGAT------AGTAC-GA---AATACAATTG----------C-CCTGTTGACA-AAGATGGAAGGTTAGAT--TTTACTTTGC-AGTAACTTAGTATTC-TA--------A---------CTGTATT------ATGCCATTGAAAAATTTGA--TATTGTGC--TCACACG---CAAGAATGTGATATAGGC-TATAAT-TTTTGGAACAGCATT-TTTCGTTATATTGC-ATA-T--A-----AA--AACAGTT-AATAACCTCATCTAACGAAGATTACTTACATTGTAT-ATTTATAcaacttaaacattaggatcggcgtgttgagtaatttttgagtattgctgtgaagttgaaacaacaccggcgccacacttcagatgatcgaaaacatttccgctcactgagaacatgttagggcgatattaacagggacgtttacctccaagagacactctttcctgcttcatcctaccaactccgattcacagcataaaggtaaagatagtacgaaatacaattgccctgttgacaaagatggaaggttagattttactttgcagtaacttagtattctaactgtattatgccattgaaaaatttgatattgtgctcacacgcaagaatgtgatataggctataatttttggaacagcatttttcgttatattgcatataaaaacagttaataacctcatctaacgaagattacttacattgtatatttata
gi|5 : tcaatgtatcctgcaaaaggatgcccaggaaaatggtaagaaaagagttactatatgtcatgtcattagctagagaaaagtatggagtgtcgcaacaaaaaacaaatcttgaaaaaattatggttgttcgcaaagactttgtccacccaagctcggattctaggtaaatcttgtgaagttaaactgcgatatccatcacatggatactgggatgtcagaactaactgtgtgttgtaaaaaggagaaatttatcctacattTTAA-ATCG-TA-GCCTGTGAGCTTGGGTATTTTGGGAAAACTTGTAATGAGCTATGTCTATATC-CCTCCTTTGGGAAAGGATGCCAGGCA-ATCTGC-AACTGCTCCAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---TA---AGAAAGAGT---T-A-C-TA--TATGTATGT---------A-TTTAGC--TTAGAGAAAAGT-ATGGAGTGTC----GCA-C-----AA--AACAAA-----TCTT-------GAAAATTATTGGTTGTTT-GC-----AGA--TTGTCC-ACCAGGGT---ATT-TAGGTAAAT--CTTGTGA-AGTTAAA-TGCCGATATCC-ATCACATGG---TATGGG-ATGTCAGAA-TAACTGT--GTG-TGT--AAAAAGGAGAAATGTTATCCTACATTAAAT-AA-ACAT-----GTTTGAA-AATTTA-CGAT--ATAA---------CCATGTGAC--ATGCATT--CG--AAA---AA--AAATT----AA
gi|5 : c--AAATA----AAC---ATGTTTGAAAATTT-ACGATA-TAA-----CC--ATGT--GACATGCA---TTCGAAAAAAAATTA-AAA-T----A---AACCAT-AGG-----AT-GGCGTGTTGAAGTA-ATTTTTGAAGGTATTGCTGTGAAGGTGGAAACAACACCGGCGCC--ACAATCCAGGATGATCGAAAACATTTCC---GTC--TCACTGAGA-CA-TG--AGGCGCATATTAACAG--A--CG-TTTACCTCCAA--GA-GAC-ACC--TTTCC-TGCTTCATC-TAC-AACTCC-ATTC-AC-ACATAAAGGTAA-AT--------AGTAC-GA---AATACAAT-G----------C-CCTGTTGACA-AAGATG--AAGGTAGACT-TTTACTTTGGCAT-AACTTAGTATTC-TA--------A---------CTGTATTATTGCCATGA-------AAATTG-A--TATTGTGC--TCACACGG--CAAGAATaataaaccataggatggcgtgttgaagtaatttttgaaggtattgctgtgaaggtggaaacaacaccggcgccacaatccaggatgatcgaaaacatttccgtctcactgagacatgaggcgcatattaacagacgtttacctccaagagacacctttcctgcttcatctacaactccattcacacataaaggtaaatagtacgaaatacaatgccctgttgacaaagatgaaggtagacttttactttggcataacttagtattctaactgtattattgccatgaaaattgatattgtgctcacacggcaagaat
gi|6 : cttaaatcgtagcctgtgagcttgggtattttgggaaaacttgtaatgagctatgtctatatccctcctttgggaaaggatgccaggcaatctgcaactgctccagagatcaatgtaatcctgcaaaaggatgcccagaaaatggtaagaaagagttactatatgtatgtatttagcttagagaaaagtatggagtgtcgcacaaaacaaatcttgaaaattattggttgtttgcagattgtccaccagggtatttaggtaaatcttgtgaagttaaatgccgatatccatcacatggtatgggatgtcagaataactgtgtgtgtaaaaaggagaaatgttatcctacattATATTG-TA-GTCTGTCAAATTTTGTATGCTCGGAAAGATTGTGCACAGCAATGTCCTT-TCGCCTCTTTTGGGATGATATATCAGACATAT-TGCAAAATATCGTAGAGATCAATGTAATCCTGCAAAAGTATGCACAG-AAAATTG---CA---AGACAGAGTGTTT-A-TATAGATATATATGTCATTG-GAAA-TTTAAC--GTAGAGACA-GC-CTGAAATATT----GCA-C-----AAGGATA--A-----TCTTC-------AAAATGATTGATTGTTT-ACGCTCTAGA--CTGTCC-GCCGGGTT---ATT-TTGGTGACT--CCTGTAA-AATTAAA-TG
gi|7 : tgttataaaataaacacctacttcactattctaatgaagtatattagtatatattaacatttatagtttataattgcatgtagatgttttattaccaagacattagtgagtgcaaagtggatacttcgaccacattaacatagtaatatattcattatatttgtgttcacaggccttccaatggttacagatgggatagaaacaacgacaaatgtctccgtatgtactggaatatgaaaatgaaaagattttttttatatccatgaatggtttcttgattttaatgtgaaaataaccacaaattttgttttgttaaaaatattcaaatatatcacggcatatcttttgtcggcataatttgaggtaaaatatggcttTTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TG
gi|8 : tcttgtaataaaataaacatccacttcaccatcttgatgaagtagattagcatataataacatatatagtttatgattgtatgtagctgttttattaccaagaaaataatggggggggggggagtgcaaagtggacatcttcgaccatagtagttataaaatataattcatttatttgtgttgacaggccttgcagaagttgcaattggttacagatgggagagaaggatacacaacacagggttactctgtatgtattcggaatatgaaaatgacaatatttgtatatctattaatgaaattgttttgtgtaaaaagattcaaataattattcacaggcatatctttttgtcggcatagtgttgccggtaaatgtggcTGTTT-ATATTCTAGA--ATGTCC-CCCACGCT----TT-TAGGT-ACT--CTTGTGCCAGTTAAA-TGCCGGC--CC-AGCATATGG---TGTGGATCTGTCAGGG-TACATG---TCG-TGTTGAAAAAGGAGAAGTGTGATC-TGC---AAAT-GGGAT-TCA-AGGTGTGAATGTTTTATGATTGAACAG---TTTCTTCTATG------ATGGATG--AGAGTAACAGAAGAAAATTGATAAACTGTGTACTTTACATTTT-GC-ATT-CAAACCATTC--AGTT--AA---G-A---AT-------AAATAA-GA--T----G---AAATAT-ACA-----AT-GAC-TGTTAAAGTGTATTTTGAAAGGTATTGGTTTG-ACGTGGTAACAACACTTGCTCCGAAC-ATCCAGAATGACCCATAATATT-CC---GTC--TCACTGAGA-CAGTA--AT-CTGACACTAACAG--AGACG-TTCTT----AC--GA-GAAGACT--TCATC-TGCTCTATC-TAC-ATCTCC-AGCT-GT-GCATAAAGGTAA-ACAC------A--AA-GA---AAAAGAAA-G----------C-CTCATTTACAGCAGATG--AGGTTA-AAC-ATTATTTCGG---CA--TCAGTATTTGTT--------A---------TTGCA--------ATGT-------AAATTT-AACGATCAC-CAATCACACGGC-CAGGGATGT
gi|9 : CAAGG--AAATT----AAC---TTACTTTACATTTT-GCAAAA-TAAAC-ATTTTTATTT--ATTA-A-AAATTT-------AAATAG-AAA-T----A---AAACAT-ACG-----AT-GACGAATAAAAGT-TGTTTTGAAAGGTATTGGTGTGGACATGGTAACAAGAACTACTCC--ACGATCCAGGATGACGATTGATATTTCTGGGGTGGACTACTGAGA-CA--G--GTCCTGCCACGAACAG--A--AG-TTTTATT--AT--GGTGAC-ACTGGTAATC-TGCTCTA-A-TAC-GACTTC--GTCAACAGCAG-AAGGTAA-AGAA------AAC----A---AATACAAT-A----------CAAACGTTC-CA-AAGAT-----AGTAAAACATTTACTTC-G-ATCAGCTTAATATTT-TA--------AACTGTATTGCTGCA--------ATGT-------TATTTT-A--TATCGCAC--CCa
blockSeqs : A G A GG T A A C G G C C A G A G TTA TGT A TTTA A A TCATTGGAAATTT GA A C TGAT A TTTAA GG TTCTATTTTATTTAAAA T GT T CTT A CGG C AA C C A ATA T C TT CAA T TG G ATT G G CATT AT A TGATTGA ACT GTGGACCATGCATTCGAAA GA GATA TGTG T AACA T CCATGTGACATGCATTCGAAAAAA GAG T TACAACTT T ATACA C G AA A A G G GA G AT GGG GGA A G TT T GG GA T C T CTA T G GG C C CA G A A A G . CAAACAATGACCC TGTGTACTAGCA A T G TG GC GGA A A ACA G ATC G A TTAAACTGTATTGC TTATTGCC CATTGAA G AC A AA AA T GG C TT TA C CA A TTATACAT AC AG G AA T ATCTAACG A TTACT G A G GTG A T C T . . C TA G
blockSeqs : T . . GG G C . C G G T C . G A . . . A TTTA A A TCATTGAAAATTC . A . . . . . AAACAAATCTTGAA . GT A T . . . . . . . . . . AA T . . C ATT . . CGA A T TTATT A GATGGATGAGAGTAACAG . . A A GTA . ACATTTTTATTTATTAAAAATTTA CA . A . . . T GT A C C C . T AT . G . . . A . . . T C A . . . . . G . A . A G . ATAGTACGA TTG . A C TA T G G A CA A AGC A A CTAATTCTTTTAT TT . . . G . C G GG . G TT C AT A TA . T . . T AC G GC A T .
blockSeqs : T . . TT G A . G A G T G . A A . . . G TTG A G ATTAAGAAATG . . . . . . . GATTATCTTG . AT T A . . . . . . . . . . CA C . . C . . . CAA G T TTGAT A GTGACATGCATTCGAAA . . A A ACG . CCATGTGGACCATGCATTCG AA . A . . . A A A A C C . A AT . G . . . C . . . T C C . . . . . A . A . . G . AAAATAT TG . A G CG C G C T CT G AGT C A TGTTAT . . . . G . . . . . T . A . TA . G . . .
blockSeqs : . . . TT . T . G A A . C . G A . . . A TTA A G TCATGTCATT . . . . . . . ACAAATCTTG . GC A T . . . . . . . . . . AA C . . G . . . CAA A A TCGT A TGTACGTAACAG . . A A ACG . ACCATTCAGTTAAGAATA TA . A . . . G A G G C C . A GA . G . . . T . . . C C A . . . . . G . T . . T . AAAAGAA TG . C G GA T G T G AA G CAT A A CTAAC . . . . G . .
blockSeqs : T . . T A . . . G A . . . A AC A G TAATTAATT . . . . . . . TATTTTCTAG . GC T A . . . . . . . . . . AC T . . T . . . CAA G A TCTT . . . . T T GCA . AGATTTGTTTAACAGTG AA . A . . . G T G C C C . A GA . C . . . T . . . C C A . . . . . A . T . . T . AGTACGA AG . C A GA A G G G CT G ATC A A CTAAC . . . . A . .
blockSeqs : C . . . . . T . . . C AC . . TATTT . . . . . . . TATTATCT . GC T T . . . . . . . . . . AC T . . T . . . . G T CGAT . . . . T GC . CATTTATTTAATAGA AG . G . . . G A T C G A . G CA . C . . . C . . . T . C . . . . . A . C . . T . ACAAAGA TA . T G TA A . T A AC . AT G A TGA . . . . . .
blockSeqs : . . . . C TA . . . . . . . . . . TAATCTTC . AT T C . . . . . . . . . . CA . . . G . . . . A . CGAT . . . . . A . . . . T G . . . . . AT . . . . . C . . . . . T . . . . . G . T . . G . AAAACA . . A . C A . G . T . C . . AC . . . .
blockSeqs : . . . T . . . . . . . .
blockSeqs : . . . A . . . . . .
blockSeqCons : TTA*** CCGT*** A** GTGGCATGACGAAG************ GCG* ACATTCATTTATTTAANAATTA************** A* AAAANGA************ CTAAC******************
originalCons : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTATCGTT--ACAAA--TTTCTTCTATG------ATGCATG--CG--TAACAGAG--AAATT----AAC---GTACTTTACANTTT-GCGATA-TAAA--ATTC--ATTT--AACA-G-A---TT-------GAATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTATATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAA------AATAA-GA---AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
finalCons : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTGTTA---TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTACCGT---ACAAA--TTTCTTCTATGTGGCATGACGAAG------------AG--AAATT----AAC---GTACTTTACANTTTGCG-ATA-TAAACATTCATTTATTTAANAATTA--------------AATAA-AAA-T----A---AAACAT-ACG-----AT-GACGTGTTAAAGTA-ATTTTGAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AGAAAANGA------------AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTCTAAC------------------TGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTCATTGTATTTGTGTTTACAGGCCTTTTAAATGTTGCTATGGTTACAGATGGGATAGAAATACCGAAACATTTCTCCATATGTACTGGAATATGGAAATGAGAATATCAGTGTACACATTAATGATTTCCTAATTTTGATATGATATCATGCGAAAAAAAAAACCCAGTTATTGTTTTAGTTAAAGACCCAAATATATCACTGCACATCTGTGTTCAATACTCAGCAAGGTATGAGGAAAAATGTAGTTCATA
Unaligned ( gi|13 ): ATATTCATGAATGTAATGGATATACAATTCTAATTTTAAGTAGATGAGTAAATATAATGACATCTAAAGTACATGGCTGTATGTAGATGATTTATTGCCAAAACAATTATAAGTGGAAAGAGGCCTGTTCAGCCATATGTCATAGTAAGATTTTATGTTTACAGACCTTTTAAATGTTGCAGTGGTTACAGATGG
Unaligned ( gi|15 ): GTTGCAGTGGTTACAGATGGGATAGAAATACTGAAAAATGTCTCCGTACGTATTTGAATATACAACGAAGAATATTTGTATATTCTTTAACTCTAACATGATATCATG
Unaligned ( gi|16 ): CGATTTTATATATGCTTTTAGGTCTTTCAAATGTTGCAGTGGTTACAAATGGGATAGGGATACTAAACTTTGTACCCGTAAGTA
Alignments
lowQualScore : 1 1 222222 333333333333333 1 1111 11111 2222222222222222222222 111 6666666666666666666666666666666666666666666666666666 1111 44444444444444 222 11111 1 111 1 22222222222 111111 2222222222222 111 33333333333333333333333 22222222 1111111 11 11 1 333 222 22 3333333333 11 11 1 11 22222222 22222 1 222 1 1 1 1
lowQualScore : 6 8 8 0 11 5 0 1 6 6 1 0 4 4 5 5 0 6 0 3 5 888 888 1 111111 3 3 444444444444444 66 0 5 0 0000 5 22222 66 8888888888888888888888 0 0 4 22 3 555 4 777 4 55 4 4 0 5 0 888 0 5 5 11 999 5 66 1 0 777 5 5 0 6666 0 66 5 8888888888888888888888888888888888888888888888888888 11 9999 7777 3 9999 88888888888888 6 66 1 999 666 3 5 22222 5 3 0 5 1 0 5 2 66 7 44 0 888 111 5 5 66 1 66 66 5 2 3 888 5 5 66 0 5 5 66 5 1 5 0 1 5 33333333333 66 55 444444 0 5555555555555 5 1 1 88 66 0 999 1 5 222 1 6666 5 3 66666666666666666666666 55555555 6666666 5 66 1 77 55 1 77 0 000 111 6 0 11 3 0000000000 33 11 0 33 3 11111111 1 11111 1 0 3 2 000 1 1 1 5 5 5 1 22 5
lowQualScore : . . . . .. . . . . . . . . . . . . . . . . ... ... . ...... . . ............... .. . . . .... . ..... .. ...................... . . . .. . ... . ... . .. . . . . . ... . . . .. ... . .. . . ... . . . .... . .. . .................................................... .. .... .... . .... .............. . .. . ... ... . . ..... . . . . . . . . .. . .. . ... ... . . .. . .. .. . . . ... . . .. . . . .. . . . . . . ........... .. .. ...... . ............. . . . .. .. . ... . . ... . .... . . ....................... ........ ....... . .. . .. .. . .. . ... ... . . .. . .......... .. .. . .. . ........ . ..... . . . . ... . . . . . . . .. .
lowQualScore : 0 0 0 6 22 0 8 0 7 7 0 4 0 1 0 7 7 6 2 6 0 888 888 0 111111 2 4 555555555555555 99 0 0 9 6666 0 55555 99 6666666666666666666666 1 9 0 11 5 888 0 000 0 55 0 0 2 0 4 888 2 0 0 22 111 0 99 0 2 555 0 0 2 6666 2 11 9 6666666666666666666666666666666666666666666666666666 99 4444 6666 0 6666 22222222222222 1 00 0 111 111 4 0 55555 0 4 0 0 1 2 6 5 99 4 11 4 888 444 0 0 99 1 99 99 0 2 4 222 0 0 99 5 0 0 11 0 0 0 0 0 0 88888888888 99 22 444444 4 6666666666666 0 0 4 55 00 2 444 4 9 555 4 6666 4 2 00000000000000000000000 00000000 2222222 0 99 7 99 88 0 55 0 000 000 5 8 00 2 8888888888 88 00 0 88 2 11111111 0 77777 0 7 7 0 555 0 0 0 5 5 5 0 00 0
consensus : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTATNA-T---ACAAATTTC-TTCTAT-G-TGG--CATGCA------C-G-AA--GAGAAATT----AAC---GTACTTTACANTTTG-CGATATAAACAT-----T--C--ATTCATTT-AANAAT-AAATAA-AAATAAAACAT-ACG-----AT-GACGTGTTAAAGTA-ATTTT-GAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AG-----------AAA--ACGA------AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
Reference ( family-1834 ) : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCAATGTCCNT-TCGCCTCTTTTGGGANGGGATGCCAGGCATATCTGC-AACTGCTCTAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---CA---AGANAGAGTG-TT-A-TATAGATATATATGTCATT--GAAA-TTCAAC--TTAGAGACA-GC-ATGGAATGTT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGGTTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTATCC-AGCATATGG---CGTGGG-ATGTCAGGA-TANATGC--TCG-TGT--GAAAAGGAGAAGTGTNATCCTGC---AAAT-GG-ATGTCA-AGGTGTGAG-GNTTTACCG-T---ACAAATTTC-TTCTAT-G-TGG--CATG-A------C-G-AA--GAGAAATT----AAC---GTACTTTACANTTTG-CGATATAAACAT-----T--C--ATTTATTT-AANAATTAAATAA-AAATAAAACAT-ACG-----AT-GACGTGTTAAAGTA-ATTTT-GAAAGGTATTGGTGTGGACGTGGTAACAACACCTGCTCC--ACGATCCAGGATGACCGNTGATATTTCC---GTG--TCACTGAGA-CA-TG--ATGCTGACACTAACAG--A--CG-TTTTCCTCCAC--GA-GAC-ACT--TTATC-TGCTCTATC-TAC-GACTCC-AGNC-AC-GCANAAAGGTAA-AG-----------AAA--ANGA------AATACAAT-G----------C-CNCGTTCGCA-NAGATG--AGGGTANANC-TTTACTTCGG-ATCAGCTTAGTATTC-TA--------A---------CTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGAATGTNACGTAGGC-TACAAT-NTTTGGAACAGCA-T-TTTCGTTAT-NTGCAATA-T--A-----AA--AAT-NTT-AAT--CTTC--CTAAC-AANATTGC-TNCGTCGTATGAGTTATAGTGATNANTNATCTTCTCGAGTAATCTTACTTAAATNTNNATTCCTAAATAGAGGGATAA
gi|1 : TTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TGTCGGTATCC-AGCATATGG---CGTGGA-ATGCCAGGG-TACATGC--TCG-TGT--GACGAGGAGAAGTGTCGTCCTGC---AAAT-GG-ATGTCA-AGGTGTGAC-GTTTCATTATT---CCAAATTTC-TTCTAT-G-ATG--CATGCA------C-GTAACGGAGAAATT----GAC---GTACTTTAC---------ATATAAG--------T--C--AT---------CA--TGAATAA-AAATAAAACAT-ACA-----AT-GACATGATAAAGTATATTTC-G-AAGGTAATGGTATGGACGCAGTAACAACAGCTGCTCC--GAAGTCCACGATGACCACTGACATCTCC---GTA--TCACTGAGC-CA-TG--ATGCTGACATTAACAG--A--CG-TTTTCCTTCAC--GA-GAC-ACT--TTATC-TGCTGCATC-TAC-TATTCC-AGTC-AT-GCTTAAAGGTAACAGCATCCACCATTAAA--AGAA------AA---AAA-G----------C-CTCGTTCACA-CAGACG--AGAGTATATC-TTTACTCTGG-ATCAGCTTAAT-----TA--------A---------TTGCA--------ATGT-------AAATTT-A--TATCGCGC--TCACACGG--CAAGGATGTAACGAA--C-TACAGTGATTTGGAACAATA-TCTTTTGCTAT-TTGCAATA-TACA-----GA--AAT-CTT-AAT--CTTC--CTAA--AACATT-C-TCCGTCGCATAAGTTATA---ATCAATGATCTTC-CGAGTAATCTTACTTAAATGTGTATTTCTAAATAGA-AGATAA
gi|10 : TGGGAGAGGATGCCATGTA-ATCTGC-AACTGCACTAGAAATCATTGTAATCCCACAAAAGGATGCCCTG-AAAATGGTTACATGTAGAATGAGTG----ACTATAAATATATGTG----------------A---TTAAGGACA-AC-GTGGGATGTT----GCA-C-----GA--AG---A-----TTATCT----TGAAAATGATTGGTTGTTT-ACGTTCTAAA--TTGTCC-CCCAGGCT---ATA-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGT---CGTAGA-ATGCAAGGG-CGTTTGT--TCA-TGT--GAAAAAGAAAAGTGTGATCCTGC---AAAT-GG-ATGTCG-AGGTGTGAA-G-TTTATCG-T---AAACTTTTA-TTCTAT-T-ATG--CATG-
gi|11 : --ATTTATTT-AACAAT--AATGAGAAATAAAACAT-ACG-----AT-GGCGTGTTAAAGTA-ATTTT-GAAAGGTAATGGAATGGAATCGGTAACAAGAGCTGCTCC--ACGATAGATGATGGCCATTGCTATTTCC---ATG--CTACCTAGA-CA-TG--CTGCTGACATTAGCAG--A--CG-CTTTCCTTCTA--GA-GAC-AAT--GTATC-TCATCTATC-TAC-GACTAC-AAAC-AT-GTGGAAAGGTAG-AA-----------AAA--ATAT------AATACAA-------------C-CTC---TGCA-TAAATG--ATAATAAGCA-TTTTCCTCGA-ATCAGCTTGGTATTC-TAATTCTTTTA---------TTGCA--------ATGT-------AATTTT-A--Ttg
gi|14 : GTTGTTTTA---TCAAGA--ATGTCT-ACCAGGAT---ACA-CAGG-GACCAACT-GTGA-ACTTCAA-TGTCGGTATCCAAGC-TTTGG---GGTCGG-CTGTCAACA-GAAATGCAATTG-TAC--GAAA--GACAATTGCCATGTT-C---AAACGGG-ATG-CATTGGTATG-G-GATATATCT-T---AC-GATTTCATTTCGT-G-T
gi|17 : aaaatTAGGCCTATAAT---TTGGAACAGCA-TATTTCGTTAT-ATGCAATA-T--A-----AAACAGT-TAT-AAC--CTTC--
gi|2 : gataTTAAAATTGGTAAGTCTGGTAGCTTGGGTAT-TTTGG---GACTGTTTACAGCAATGTCGAT-TCCCCTCGTTTGGGAGAGGATGCCAGGCA-ATCTGC-AACTGCTCTAGAGATCAATGTAATCACGCAAACGGATGTCCAG-AAAATGG---TA---AGAATGCGTG----ACTATAAATATATATG--ATTAAGAAA-TG-AAC--TTGGAGACA-GC-ATGGAATGTT----GTT-C-----AA--AT---A-----TTATCT------------------TGTTT-ACGTTATAGA--TTGTCC-CCCAGGCT---ATG-TAGGTGACT--CTTGTGA-AGTTAAA-TGCCGGTACCC-AGCATATGG---CGTGGA-ATGTCAGGA-TACATGC--TTG-TGT--GAAAAGGAGAAGTGTCATCCTGG---AAAT-GG-ATGTCA-AGGTAAGAA-GTTTTATTATT---ACAAAGTTC-TTCTA------------------------------GGGAATT----AAA---ATACTTCACATCTTG-TAATATTAA-----------C--ATTTATTT-AATAG--AAAC---AAATAAAACAT-ACGATACAAT-GACTTGTGAAAGTA-ATTTT-GAAAGATATTGGTATGGACGTGGTAACAACACCTGATCC--ACTATCCCGGATGACCATTGGTTTAACC---GTG--TCACTTAGG-CA-TA--TTGCTGAAAATAGCAA--A--CGTTTTTCTTCTACTAGA-GAC-ACT--TTATC-TACTCTATC-TAC-AACTCC-AGAC-GT-ACAGAAAGGTAA-CG-----------AAA--AGAA------AATACAAT-GTGTACTAGCAC-AACGTTTAC--CA-ATG--AGAGTGAACT-TTTCC------AT-AACT--GTATT------------A---------CTGCA--------AGGT-------AAATTA-A--CATCACAC--TCACACGG--CAAGAATGTTACGTA--C-TACAAT-G---GGAATAATA-T-GTT-GGCATCATGCAATATT--ATACATAA--TAT-GTTGAAT--CT-------AC-AAAA--GC-TGTATAATATGAGTTCTAGTGATAATTCATCTTCTCAAAT-ATCTTATTT-AATCTTAATTCTTAAATAGAGGGATAAatcta
gi|3 : GATTGTGCTTATCAATGTCCCT-TCCCCTCCTATGGAAAGGAATGCCAA-CTCGTGTGT-AACTGTTCTAAAGGCCAATGTAACCATGTAAAAGGATGCTCAA-AAAGTGG---TA---AGAGAGA----TT-G-TATAGGTAAAT---TAATT----AA-TT-AATGATT-GATACA-ACCATGGC-TGTTTGATATA-CTTTAAAA--ATTCTA-----TTTTATTTAAAAAAAAATATT-----TTT-ACATTCAAGT--ATGCCC-TCCGGGTT---ATT-CAGATGACT--TTTGTGA-ATTTGAA-TGCCGTTATCC-AAATTTTGG---TATTGG-ATGTCAGAA-TGAATGC--TTG-TGT--GACAAAGAGAAGTGTGATCCTGC---AAAT-GG-ATGCCA-AGGTGTGAG-GTTTTATTGAT---ACAAATTCC-CTCTCTTG-TA---CGTA-A------C----A--GAGAAATA----AAT----TACTTTACAACGTAACAATATAAAGAT-----T--------TGTTT-AACAGTGAGTCAA-AATTAAAGCAT-ATA-----GC-GATATTCTAAAGCT-ATTTT-CAATCGTATAGGAATGGAAATGGTGACAAC---TGCTCT--ACAATCCAGGACGACCATTGATATCTCC---GTG--TCACTCAAG-CA-TG--ATGCTGACACTAACAG--A--AG-TTTTCTTCCAC--CC-GAC-ATT--TTCTC-TGCTCTTTC-TAC-GACTAC-AGAC-AT-GCAGAAAGGTAG-GG-----------CAA--ACAATGACCCAATGAAAT-G----------C-CATCTTCGTA-TGAAT---AGGCTTTAAA-TTTACTTCAG-AGCACTTTAAT-----TG--------A----------TACA--------AAGT-------CAATTT-A--TGCTGTGC--TCACTCGGAACAAG
gi|4 : tggatactttgggattTCAATGTA-TCCTGCAAAAGGATGCCCAGGAAAATGG---TA---AGAAA-AGAG-TT-A-C-------TATATGTCAT---GTCA-TT-AGC--T-AGAGAAAAGT-ATGGAGTGTC----GCAAC-----AA--AA---AACAAATCTTG-----AAAAAATTAT-GGTTGTT---CGCAA-AGACTTTGTCCACCCAAGCTCGGATTCTAGGTAAAT--CTTGTGA-AGTTAAACTG-CGATATCC-ATCACATGGATAC-TGGG-ATGTCAGAACTAACTGT--GTGTTGT--AAAAAGGAGAAAT-TTATCCTACATTAAAT-AA-ACAT-----GTTTGAG-AATTTACGA-T---ATAA--------CCAT-G-TGGACCATGCATT----C-G-AA--AAAAAATT----A
gi|4 : AAATA----AAC---ATGTTTGAGAATTTA-CGATATAACCATGTGGAC--C--ATGCATTC-GAAAAAAAATTAC-AACTTAAACATTAGG-----ATCGGCGTGTTGA-GTA-ATTTTTGA---GTATTGCTGTGAA-GTTGAAACAACACCGGCGCC--ACACTTCAG-ATGATCGAAAACATTTCC---GC---TCACTGAGAACA-TGTTAGGGCGATATTAACAGGGA--CG-TTTACCTCCAA--GA-GAC-ACT--CTTTCCTGCTTCATCCTACCAACTCCGATTC-ACAGCATAAAGGTAA-AG-----------ATAGTACGA------AATACAATTG----------C-CCTGTTGACA-AAGATGGAAGGTTAGAT--TTTACTTTGC-AGTAACTTAGTATTC-TA--------A---------CTGTATT------ATGCCATTGAAAAATTTGA--TATTGTGC--TCACACG---CAAGAATGTGATATAGGC-TATAAT-TTTTGGAACAGCATT-TTTCGTTATATTGC-ATA-T--A-----AA--AACAGTT-AATAACCTCATCTAACGAAGATTACTTACATTGTAT-ATTTATAcaacttaaacattaggatcggcgtgttgagtaatttttgagtattgctgtgaagttgaaacaacaccggcgccacacttcagatgatcgaaaacatttccgctcactgagaacatgttagggcgatattaacagggacgtttacctccaagagacactctttcctgcttcatcctaccaactccgattcacagcataaaggtaaagatagtacgaaatacaattgccctgttgacaaagatggaaggttagattttactttgcagtaacttagtattctaactgtattatgccattgaaaaatttgatattgtgctcacacgcaagaatgtgatataggctataatttttggaacagcatttttcgttatattgcatataaaaacagttaataacctcatctaacgaagattacttacattgtatatttata
gi|5 : tcaatgtatcctgcaaaaggatgcccaggaaaatggtaagaaaagagttactatatgtcatgtcattagctagagaaaagtatggagtgtcgcaacaaaaaacaaatcttgaaaaaattatggttgttcgcaaagactttgtccacccaagctcggattctaggtaaatcttgtgaagttaaactgcgatatccatcacatggatactgggatgtcagaactaactgtgtgttgtaaaaaggagaaatttatcctacattTTAA-ATCG-TA-GCCTGTGAGCTTGGGTATTTTGGGAAAACTTGTAATGAGCTATGTCTATATC-CCTCCTTTGGGAAAGGATGCCAGGCA-ATCTGC-AACTGCTCCAGAGATCAATGTAATCCTGCAAAAGGATGCCCAG-AAAATGG---TA---AGAAAGAGT---T-A-C-TA--TATGTATGT---------A-TTTAGC--TTAGAGAAAAGT-ATGGAGTGTC----GCA-C-----AA--AACAAA-----TCTT-------GAAAATTATTGGTTGTTT-GC-----AGA--TTGTCC-ACCAGGGT---ATT-TAGGTAAAT--CTTGTGA-AGTTAAA-TGCCGATATCC-ATCACATGG---TATGGG-ATGTCAGAA-TAACTGT--GTG-TGT--AAAAAGGAGAAATGTTATCCTACATTAAAT-AA-ACAT-----GTTTGAA-AATTTACGA-T---ATAA--------CCAT-G-TGA--CATGCATT----C-G-AA--AAAAAATT----AA
gi|5 : cAAATA----AAC---ATGTTTGAAAATTTA-CGATATAACCATG----TGAC--ATGCATTCGAAAAA--AAATTA-AAATAAACCAT-AGG-----AT-GGCGTGTTGAAGTA-ATTTT-TGAAGGTATTGCTGTGAAGGTGGAAACAACACCGGCGCC--ACAATCCAGGATGATCGAAAACATTTCC---GTC--TCACTGAGA-CA-TG--AGGCGCATATTAACAG--A--CG-TTTACCTCCAA--GA-GAC-ACC--TTTCC-TGCTTCATC-TAC-AACTCC-ATTC-AC-ACATAAAGGTAA-AT-----------AGT--ACGA------AATACAAT-G----------C-CCTGTTGACA-AAGATG--AAGGTAGACT-TTTACTTTGGCAT-AACTTAGTATTC-TA--------A---------CTGTATTATTGCCATGA-------AAATTG-A--TATTGTGC--TCACACGG--CAAGAATaataaaccataggatggcgtgttgaagtaatttttgaaggtattgctgtgaaggtggaaacaacaccggcgccacaatccaggatgatcgaaaacatttccgtctcactgagacatgaggcgcatattaacagacgtttacctccaagagacacctttcctgcttcatctacaactccattcacacataaaggtaaatagtacgaaatacaatgccctgttgacaaagatgaaggtagacttttactttggcataacttagtattctaactgtattattgccatgaaaattgatattgtgctcacacggcaagaat
gi|6 : cttaaatcgtagcctgtgagcttgggtattttgggaaaacttgtaatgagctatgtctatatccctcctttgggaaaggatgccaggcaatctgcaactgctccagagatcaatgtaatcctgcaaaaggatgcccagaaaatggtaagaaagagttactatatgtatgtatttagcttagagaaaagtatggagtgtcgcacaaaacaaatcttgaaaattattggttgtttgcagattgtccaccagggtatttaggtaaatcttgtgaagttaaatgccgatatccatcacatggtatgggatgtcagaataactgtgtgtgtaaaaaggagaaatgttatcctacattATATTG-TA-GTCTGTCAAATTTTGTATGCTCGGAAAGATTGTGCACAGCAATGTCCTT-TCGCCTCTTTTGGGATGATATATCAGACATAT-TGCAAAATATCGTAGAGATCAATGTAATCCTGCAAAAGTATGCACAG-AAAATTG---CA---AGACAGAGTGTTT-A-TATAGATATATATGTCATTG-GAAA-TTTAAC--GTAGAGACA-GC-CTGAAATATT----GCA-C-----AAGGATA--A-----TCTTC-------AAAATGATTGATTGTTT-ACGCTCTAGA--CTGTCC-GCCGGGTT---ATT-TTGGTGACT--CCTGTAA-AATTAAA-TG
gi|7 : tgttataaaataaacacctacttcactattctaatgaagtatattagtatatattaacatttatagtttataattgcatgtagatgttttattaccaagacattagtgagtgcaaagtggatacttcgaccacattaacatagtaatatattcattatatttgtgttcacaggccttccaatggttacagatgggatagaaacaacgacaaatgtctccgtatgtactggaatatgaaaatgaaaagattttttttatatccatgaatggtttcttgattttaatgtgaaaataaccacaaattttgttttgttaaaaatattcaaatatatcacggcatatcttttgtcggcataatttgaggtaaaatatggcttTTAATATTG-TA-GTCTGTTAAATTTTGTATGTTCGGAAAGATTGTGCACAGCATTGTCCTT-TCGCCTCTTTTGGGACGGAATATCAGACATAT-TGC-AAATGCTCTA----------TATTCCTGCAAAAGTATGCCCAG-AAAATTG---CA---AGACAGAGTG-TTTA-TATAGATATATATGTCATT--GAAAATTCAAC--TTAGAGACA-GC-ATAAAATATT----GCA-C-----AA--AT---A-----TTTTCT----AGAAAATTATTGATTGTTT-ACGCTCTAGA--TTGTCC-CCCAGGCT---ATT-TTGGTGTCA--CTTGTGA-AGTTAAA-TG
gi|8 : tcttgtaataaaataaacatccacttcaccatcttgatgaagtagattagcatataataacatatatagtttatgattgtatgtagctgttttattaccaagaaaataatggggggggggggagtgcaaagtggacatcttcgaccatagtagttataaaatataattcatttatttgtgttgacaggccttgcagaagttgcaattggttacagatgggagagaaggatacacaacacagggttactctgtatgtattcggaatatgaaaatgacaatatttgtatatctattaatgaaattgttttgtgtaaaaagattcaaataattattcacaggcatatctttttgtcggcatagtgttgccggtaaatgtggcTGTTT-ATATTCTAGA--ATGTCC-CCCACGCT----TT-TAGGT-ACT--CTTGTGCCAGTTAAA-TGCCGGC--CC-AGCATATGG---TGTGGATCTGTCAGGG-TACATG---TCG-TGTTGAAAAAGGAGAAGTGTGATC-TGC---AAAT-GGGAT-TCA-AGGTGTGAATGTTTTATGA-TTGAACAG-TTTC-TTCTAT-GATGG---ATG-AGAGTAACAG-AA--GA-AAATTGATAAACTGTGTACTTTACATTTTG-C-ATTCAAAC----------C--ATTCAGTT-AAGAAT-AAATAA-GA-TGAAATAT-ACA-----AT-GAC-TGTTAAAGTGTATTTT-GAAAGGTATTGGTTTG-ACGTGGTAACAACACTTGCTCCGAAC-ATCCAGAATGACCCATAATATT-CC---GTC--TCACTGAGA-CAGTA--AT-CTGACACTAACAG--AGACG-TTCTT----AC--GA-GAAGACT--TCATC-TGCTCTATC-TAC-ATCTCC-AGCT-GT-GCATAAAGGTAA-AC-----------ACA--AAGA------AAAAGAAA-G----------C-CTCATTTACAGCAGATG--AGGTTA-AAC-ATTATTTCGG---CA--TCAGTATTTGTT--------A---------TTGCA--------ATGT-------AAATTT-AACGATCAC-CAATCACACGGC-CAGGGATGT
gi|9 : -AA--G-GAAATT----AAC---TTACTTTACATTTTG-CAAAATAAACAT-----T--TTTATTTATTA-AAAATTTAAATAG-AAATAAAACAT-ACG-----AT-GACGAATAAAAGTT-GTTTT-GAAAGGTATTGGTGTGGACATGGTAACAAGAACTACTCC--ACGATCCAGGATGACGATTGATATTTCTGGGGTGGACTACTGAGA-CA--G--GTCCTGCCACGAACAG--A--AG-TTTTATT--AT--GGTGAC-ACTGGTAATC-TGCTCTA-A-TAC-GACTTC--GTCAACAGCAG-AAGGTAA-AG-----------AAA--AC-A------AATACAAT-A----------CAAACGTTC-CA-AAGAT-----AGTAAAACATTTACTTC-G-ATCAGCTTAATATTT-TA--------AACTGTATTGCTGCA--------ATGT-------TATTTT-A--TATCGCAC--CCa
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TATTCATTGTATTTGTGTTTACAGGCCTTTTAAATGTTGCTATGGTTACAGATGGGATAGAAATACCGAAACATTTCTCCATATGTACTGGAATATGGAAATGAGAATATCAGTGTACACATTAATGATTTCCTAATTTTGATATGATATCATGCGAAAAAAAAAACCCAGTTATTGTTTTAGTTAAAGACCCAAATATATCACTGCACATCTGTGTTCAATACTCAGCAAGGTATGAGGAAAAATGTAGTTCATA
Unaligned ( gi|13 ): ATATTCATGAATGTAATGGATATACAATTCTAATTTTAAGTAGATGAGTAAATATAATGACATCTAAAGTACATGGCTGTATGTAGATGATTTATTGCCAAAACAATTATAAGTGGAAAGAGGCCTGTTCAGCCATATGTCATAGTAAGATTTTATGTTTACAGACCTTTTAAATGTTGCAGTGGTTACAGATGG
Unaligned ( gi|15 ): GTTGCAGTGGTTACAGATGGGATAGAAATACTGAAAAATGTCTCCGTACGTATTTGAATATACAACGAAGAATATTTGTATATTCTTTAACTCTAACATGATATCATG
Unaligned ( gi|16 ): CGATTTTATATATGCTTTTAGGTCTTTCAAATGTTGCAGTGGTTACAAATGGGATAGGGATACTAAACTTTGTACCCGTAAGTA