lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111
lowQualScore : 33 11 444444444444 11 8888888888 44444444444444444 11111 3333 6666666666666666666666 22 22222222222 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 1 1111111111 99999999999999999999999999999999999999999 11111 11111111 333333333333333333333333333 1111 444 222 1 11 000000000
lowQualScore : 4 00 77 99 888888888888 99 0000000000 3 3 22222222222222222 0 99999 0000 8888888888888888888888 55 8 0 33 44 77777 66666666666 88 44 555 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 55 3 1 1 2 8888888888 3 1 3 77777777777777777777777777777777777777777 11111 66 777 4 88888888 66 3 1 999999999999999999999999999 4444 2 444 0 888 2 88 333333333 6 6
lowQualScore : . .. .. .. ............ .. .......... . . ................. . ..... .... ...................... .. . . .. .. ..... ........... .. .. ... .............................................................................................. . .. . . . . .......... . . . ......................................... ..... .. ... . ........ .. . . ........................... .... . ... . ... . .. ......... . .
lowQualScore : 0 55 00 55 222222222222 55 8888888888 7 0 44444444444444444 7 77777 6666 3333333333333333333333 55 0 4 00 55 77777 99999999999 99 00 888 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 00 3 1 1 5 6666666666 1 4 3 44444444444444444444444444444444444444444 11111 11 888 5 88888888 22 3 4 000000000000000000000000000 0000 5 555 7 333 0 33 000000000 0 0
consensus : NNCATCNTCANTCANNCCCCNACCGGCAGAAGA-GCG--GGGGACTACTAGTT-C---CTCCCTCTGTCCGTCTGTNTGTC--TCTGTCG------CAACTTNGTT-TTCCGGACCTTTTTTT-TTTT---ATCAT---G-----CTTTGA--TT-TAGGAAGCT-GAAA-----TTTG--GC-------ATGTGATTTG-CT---AA----------TG--TA---T---T---GTATAC--------T-----T-AAGT--T--TCGTC-GCAGTTGANTGATTTTTACGAGAT-----TTATGGGACTCTGTG-CCGAATGTAGTTTTCCGGA-------CTT-TTTCTC-CACT------A-----TG---T-----G---AGA-A----NCT-GAAA-----TTT--GAT---GTGTG-------GTTNTCTAACGAGT------AGA-----TAC-AG-------ACCGAGTTTNACTTTTATTATGG-TTGACTTAT--GG--CTT---AGGATATTCAAAAATA
Reference ( gi|2 ) : ATCATCTTT-CTTATTCTCCAACCAGCAGAAGA-GAA--GGAAACTACTAGTT-CATACTCCATCTGTCTGTCTGTCTGCCCTTCTGTTC------CAACTTAATA-TTCTGTACCTTTTTTTATTTT---ATCAT---C-----CTTTGA--TT-TAGGAGCCT-GAAA-----TTTG--AC-------ATGTGGTTTA-CT---AA---AT-----TG--TA---T---T---GCATAC--------T-----T-AAGT--T--TCGTT-GCAGTTGAATGAATTCTATAAG-T-----TTATGGGACTTGGTG-CAGAATATAGTTTTCCAGA-------CTT-TTTTTC-CACT------A-----TA---T-----G---AGATA----TCT-GAAA-----TTT--GAT---GTGTG-------GTTTCCCAATGAGT------AGA-----TAC-AA-------ACGAAATTTCAC--ATGTTATGG-AGGAGTTAT--GGTCCTTTAGGGGATATCCAGAAATAA
gi|11 : CATCATTATTTAGTCCCCTACCAGCAAA----GCT--GGA--CTGTTAGTTTCAT-CTCTGTCTGTCTATCAATCTG----TCTATTTAAAATACAACTTTTTT-TTCTGAACTTTTTTTTTTTTTTTTACCAT---G-----TTTTGA--TT-TAGGATGGT-AAAA-----TTTG--GA-------ATGTGATTT
gi|4 : tatcATCTTC-ATCATACTCTA-CTGGT-GAAGACGCATTGGGGACTACTAGTT------TCCCTCTATTCATCTGTATG----TATGTTG------CAAATTTGTT-TTCTG-GTCTCTTTCT----------------------CTAGAA--TT-TGGTA--CT---AG-----T--------------ATGTTATTTG-TT---AA-----------------------T---GTATAA--------T-----T-AAACAGC--TCATT-GCAGTTGATTGATTTTTCTGAGAA-----TCATGGTACTGTGTG-CTGATTACAGTTTTGTAG--------CCT-TTTCTC-CACC------A-----T---------------GAAG----TCTAAAAA-----TTT--GAT---GT-T--------ATTATCTAACGAAT------AGA-----TGC-AG-------ACCAAGTTTCACTTTTATTATGG-TTGACTTAT--
gi|1 : tatA-AAG--GGGGACAACTAGTT------TCC-TCT--CTGTCTGTTTGTCAATCTTTTA------CAACTTAATAGTTTTTCAGACTTTTTAA-------ACCAT---G-----CTTTAA--TTATGGTAG-CT-GAAA-----TTGG--GT-------ATGCAATTTG-CT--------AC-----TG--TA-------T---GTTTAC--------A-----A-AAAT--CTATTTTT-ATAGTCCACTGGTTTTTCCAAGAT-----ATATGGGACTCAA-G-CTGAATGTATTTTTCCTGA-------C-T-TTTCTC-CACT------ATGGTTTA---TTGTAGG---AAACA-----AG-AAAA-----TTT--AATATCATGTG-------GTTTTCTAGTGATT------ACA-----TAA-AG-------ATTGAGTTTGAC--t
gi|8 : ataactcaatttttgtctttattctaatggtaaaatcAA--GGGTACTACAATTT-CC--CTC--TCTGTCTGTTTTTAAGTTCGTCTGCCA------CAAATTAGTT-TTCCGGACTTTTTTTCGCATT---GT-------------TTTGA--TT-TAGGAAGTT-AAAA-----TTTG--GC-------GTGT-GTTCAGCT---CA----------TGCATG---T---T---GAAT-T--------T-----C-AAAT--T--CCATC-ACAGTTGACTTATTTTCACAAGAT-----TTA-AGGACTTTGTA-CCCAATGTAG-TTTCCGGA-------CTT-TTtttggttgactttcatttattctaattagtaagacatagtttcatggttgactgaacatttttaatcatttacttcatattttttttattgggtgatttt
gi|6 : aACTACTAGTT------TCCCTCTATTCATCTGTATG----TATGTTG------CAAATTTGTT-TTCTG-GTCTCTTTCT----------------------CTAGAA--TT-TGGTA--CT---AG-----T--------------ATGTTATTTG-TT---AA-----------------------T---GTATAA--------T-----T-AAACAGC--TCATC-GCAGTTGATTGATTTTTCTGAGAA-----TCATGGTACTGTGTG-CTGATTACAGTTTTGTAG--------CCT-TTTCTC-CAC--------------A---T-----G---AA--G----TCTAAAAA-----TTT--G-T---AT-TT-------ATTATCTAACGAAT------AGA-----TGC-AG-------ACCAAGTTTCACTTTTATTATGG-TTGACTTAT--
gi|15 : tactctactggtgaagacgcattgggTCCGTCCGTCCGTCAGCTTTTCTATCA------TAACGCTGTT-TTCTGGAC------TTATTTT---ATTAT---A-----CTCTGA--TG-TAGGAGGTT-GGAA-----TTTGGTAC-------ATG-GGTTTA-CT---AA---t
gi|13 : acTCTGTCCATCCGTCA------AAACTTAGTG-GTCCAGA--TTTGTTT-TTTC---ATCAT---G-----CTTTGA--AA-TAGGAACCT-GAAATATGGTTTG--AC-------TTGTGATTTA-CT---AA----------TG--TATGTT---T---AAAGATCAAGG---T-----G-AAGT--T--TTGTC-ATAGTTGA
gi|5 : TTTTTTTTTTTA---ATCATGTGCTGATGCTTTGAGTTTATAGGAAACT-GAAA-----TTTT--GT-------ATCTGATTTG-CTTTTAA---ACG----TA--TG---T---TTAAGCAT----------T-----T-ATTT--T--TCTTTTACAA--GA--GAA------------------ATGGGATTTTATG-CTAAATGTAGTTTTTCAGA-------C-------TC-CACT------A-----T
gi|3 : gtctattaatttttgtttggtggaTTAGTTT---TTCAG---A-----CTTTTC--TC-T--GAACTTTGAAA-----TTTG--GT-------TTGTGATTTT-CT---AA---AT----------------------------------------------GT--T--TGTTT-ACAG----AT---TTTTACAAGAT-----TTATGGGACTCTGCG-CCAAATGTAGTTTTCTGGA-------A-T-TTTCTC-TACT------ACTTT-TATT-T-----T---AGGAA----ACT-GAAA-----TTC--AAT---ATATG-------GTtctctaacttaggaaatgaaaattcaatagacctagagtaaatttattttcatcatgtatttcaacgaaaataggacttagtttcatggttgacttctttaatgtttgtctagttcat
gi|12 : tgaactattttttgtactttagtgttataaatcctttgttggggaggtgaagaaagtttccactttgtcagttcatctgtcacta--TT-TAGAAAGCT-GTAA-----TTTGGTACCAGGGGTATGTATTTTG-TT---AA----------TG--TA---TGTTT---ACAGAT--------CAAGTCT-AGGT--T--TCGTC-ATGGTTGGATGA-TT--------T-----TTATGGAACTCTGTG-CGGAATATATTTTTCTGGA--------TT-TTTATC-TATT------A-----TG---T-----G---caagtttgagactttcatttgaacaaatatttgtaagattttgtttcatgcttgaccgaacttgaattcctctactctgtttagttttccgtattttcttcatggtacatttt
gi|7 : cagT-GAAA-----TTTG--GT-------TTGTACTTTA-CT---AA----------TG--TA-------T---GTTTAC-----------------AGT--T--TCGCC-GCAGTAGTGTGACTTGAATAA--TGAGAATTATTAAACTTTATG-TCGAGCATAGTTTGCCAAGTGTTTTTTTT-TTTTCC-CACC------A-----T---------------GCT-----TTT-GGAA-----TCC--GAT---GTGTGAAATGTAGTTACCTAGCGAGT------ACA-----CACGGA-------ACGA
gi|14 : aaggggaatatttgtttgcactccgcccgtccatcagtccgtcggtcttaaattaattttacggactttttT-AAAA-----TTCA--GG-------ATGTG-TTTA-CC---AGTGCATGCTTATG--TA---T--------CAAGT--------T-----T-AAGT--T--TCGCC-ATAGTTGAGTGATTTTGACAAGAT-----ATAAGATACTTTATATCAAA--ATAGTTTTCCGAA-------CTG-TTTTTC-
gi|9 : t-GAAA-----TTTG--GA-------ATGTGATTTG-CT---AA----------TG--CA-------T---GTATACAAATCAAGT-----TAAAGT--C--TCGTC-ACAGTTGACTG---TTTAAAAGAT-----ATATGAAATTCTGTG-CCAGATGTAATTTT-CAGG-------AGT-TTCCTC-CACT------A-----TG---TTTTAAGTTTAGA-A----AGT-GAAA-----TTT--TAT---GTa
gi|10 : TC-GCAGTTGAATGTATT-TACGAG-TC----TTATGGGAGGTTGTG-GTGAGTATAGTTTTCTAGA-------CCT-TCTT-------------------CA---T-----G------TA----TTT-G--A-----TTTAAGAT---ATGTT-------GTTTCCCAATGAGTCAACACAGATCAAGTAC-AACTTTTGTACG---TTTGAC--TTGTTCTAGCAGAAATTGTAAGG--CTT---AGGATATTCAAAAATAtaagataaaagtctcatttttgtcacagttgacctattcaaac
gi|13 : -CAAAACTTAGTGGTCCAGA-------TTTGTTTTTT-CATC------A-----TGCTTT-----G---AAATAGGAACCT-GAAATATGGTTT--GAC---TTGTG-------ATTTACTAATG
gi|8 : tctgtccatccgtAAT-TAGTTTTCCGGA-------CTT-TTTTTCGCATTGTTTTGA-----TT---T-----A---GGA-A----GTT-AAAA-----TTT--GGC---GTGTG-------tatgtttaaagatcaaggtgaagttttgtcatagttga
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GTTGAAATTTCTGACAAAAATTGTAAAACTTTTCAATGGTTGACTGAATGAATTCTTGTGCTTTGTCTAGTTTTCTGTAATTTTCGTTTTTAT
Unaligned ( gi|17 ): TAAAATTTGGAATGTGATTTGCTAACAATTTAACAGATCAAGTTCAAAGTTTTGTC
Alignments
lowQualScore : 222 1 2 111 3333333 3333333333333 44444444444444444444444444444444444 111 1111111111111 777777777777777777777777777777777777777777 111 55555555555555555555555555 1 777777777777777777777777777
lowQualScore : 1 222 0 22 33 5 3 0 222 5 6666666 0 66 0 1 55 2222222222222 2 7777 99999999999999999999999999999999999 0 77 3 1 444 66666 5555555555555 1 6666 66 44 666666666666666666666666666666666666666666 0 2 2 555 33 44 0 2 0 44 666 99999 1 22222222222222222222222222 5 1 66 0 66 888 9999 33 22 1 333 1 3 55 000000000000000000000000000
lowQualScore : . ... . .. .. . . . ... . ....... . .. . . .. ............. . .... ................................... . .. . . ... ..... ............. . .... .. .. .......................................... . . . ... .. .. . . . .. ... ..... . .......................... . . .. . .. ... .... .. .. . ... . . .. ...........................
lowQualScore : 0 000 7 00 55 5 2 0 555 7 4444444 2 11 1 0 55 9999999999999 5 4444 55555555555555555555555555555555555 3 99 3 8 888 77777 7777777777777 3 1111 88 66 888888888888888888888888888888888888888888 2 2 6 888 00 44 2 2 8 66 111 11111 3 22222222222222222222222222 0 0 99 0 99 888 5555 99 77 7 999 0 5 77 555555555555555555555555555
consensus : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---C-TCCCT--CTGTCCGTCCGTCTG--TC--TCTGT----CGCAACTTN---GTTTTCCGGAC-TTTT----TTT-TTT-TA-TCATG--------CTTTGA--TT-TAGGAAGCTGAAA-----TTTGG--NA---------TGTGATTTGCT----AA--TG--TAT-----TGT-T---A-----C---------TTAA-GT--T--TCGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA--------TG----T-----G---AGA-ATC--TGAAA-TTT--GAT---ATGTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTAT-----------------GGTCCTTTAGGGGATATCCAGAAATA
Reference ( family-1831 ) : NNCATCNTCANTCANNCCCCNACCGGCAGAAGA-GCG--G-GGGACTACTAGTTC---C-TCCCT--CTGTCCGTCTGTNTG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACCTTTT----TTT-TTT-TA-TCATG--------CTTTGA--TT-TAGGAAGCTGAAA-----TTTGG--CA---------TGTGATTTGCT----AA--TG--TAT-----TGTAT---A-----C---------TTAA-GT--T--TCGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTCTGTGCCGAATGTAGTTTTCC--GGACTTTTTCT-----CCACTA--------TG----T-----G---AGA-ANC--TGAAA-TTT--GAT---GTGTGGTTNTCTAACGAGTAGATACAGACCGAGTTTNACTTTTATTATGGTTGACTTAT-----------------GG--CTT---AGGATATTCAAAAATA
gi|1 : G--G-GGGACAACTAGTTT---C----CT--CT--CTGTCTGTTTG--TCAATCTTT----TACAACTTAATAGTTTTTCAGAC---------TTT-TTA-AA-CCATG--------CTTTAA--TT-ATGGTAGCTGAAA-----TTGGG--TA---------TGCAATTTGCT----AC--TG--TA------TGTTT---A-----C---------AAAA-AT--CTATTTTTATAGTCCACTGGTTT---TTCCAAGATATATGGGACTC-AAGCTGAATGTATTTTTCC--TGAC-TTTTCT-----CCACTATGGTTTATTG----T-----A---GGA-AACAAGAAAA-TTT--AATATCATGTGGTTTTCTAGTGATTACATAAAGATTGAGTTTGACTT------TGGTTGACTT
gi|10 : ataactcaatttttgtctttattctaatggtaaaatcaaaTCGCAGTTGAATG-TAT---TTACGAGTCTTATGGGAGGTTGTGGTGAGTATAGTTTTCT--AGAC--CTTCT-----TC---A--------TG----T-------------ATT--TG--A-TTTAAGAT---ATGTTGTTTCCCAATGAGTCAACACAGATCAAGTACAACTTTTG-TACGTTTGACTTGTTCTAGCAGAAATTGTAAGG--CTT---AGGATATTCAAAAATAtcatttattctaattagtaagacatagtttcatggttgactgaacatttttaatcatttacttcatattttttttattgggtgatttt
gi|11 : CATCATTATTTAGTCCCCTACCAGCAAA----GCT--G-G--ACTGTTAGTTT---CATCTCTGTCTGTCTATCAATCTG--TC--TATTTAAAATACAACTTT---TTTTTCTGAACTTTTTTTTTTTT-TTT-TA-CCATG--------TTTTGA--TT-TAGGATGGTAAAA-----TTTGG--AA---------TGTGATTT
gi|12 : tatc--TT-TAGAAAGCTGTAA-----TTTGG--TACCAGGGGTATGTATTTTGTT----AA--TG--TAT------GTTT---A-----CAGATCAAGTCTAG-GT--T--TCGTCATGGTTGGATGATTT---TTA---------TGGAACTCTGTGCGGAATATATTTTTCT--GGA-TTTTTAT-----CTATTA--------TG----T-----G---
gi|13 : cagTCTG--TCCATCCGT----CAAAACTTA---GTGGTCCAGA--TTTG----TTT-TTT-CA-TCATG--------CTTTGA--AA-TAGGAACCTGAAATATGGTTTGA--CT---------TGTGATTTACT----AA--TG--TA------TGTTT---AAAGATCAAGG-----TGAA-GT--T--TTGTCATAGTTGA
gi|14 : TAAAA-----TTCAG--GA---------TGTG-TTTACC----AG--TG--CATGCTTATGTATCAAG-----T---------TTAA-GT--T--TCGCCATAGTTGAGTGATTT---TGACAAGATATAAGATACTTTATATCAAA-ATAGTTTTCC--GAACTGTTTTT-----C
gi|15 : tCT--CCGTCCGTCCGTCAGCTTT--TCTAT----CATAACGCT---GTTTTCTGGAC---------TTA-TTT-TA-TTATA--------CTCTGA--TG-TAGGAGGTTGGAA-----TTTGGTACA---------TG-GGTTTACT----AA--a
gi|17 : aTAAAA-----TTTGG--AA---------TGTGATTTGCT----AA--
gi|2 : CATCTTT-CTTATTCTCCAACCAGCAGAAGA-GAA--G-GAAACTACTAGTTCATAC-TCCAT--CTGTCTGTCTGTCTG--CCCTTCTGT----TCCAACTTA---ATATTCTGTACCTTTT----TTTATTT-TA-TCATC--------CTTTGA--TT-TAGGAGCCTGAAA-----TTTGA--CA---------TGTGGTTTACT----AAATTG--TAT-----TGCAT---A-----C---------TTAA-GT--T--TCGTTGCAGTTGAATGAATT---CTATAAG-TTTATGGGACTTGGTGCAGAATATAGTTTTCC--AGACTTTTTTT-----CCACTA--------TA----T-----G---AGATATC--TGAAA-TTT--GAT---GTGTGGTTTCCCAATGAGTAGATACAAACGAAATTTCAC--ATGTTATGGAGGAGTTAT-----------------GGTCCTTTAGGGGATATCCAGAAATAcaatttaacagatcaagttcaaagttttgtc
gi|3 : atAGTTT---C--CACT--TTGTCAGTTCATCTG--TC--ACTAT-----------TA---GTTTTTCAGACTTTT-----------------------------CTCTGAA-CT-T-------TGAAA-----TTTGG--TT---------TGTGATTTTCT----AAA-TG--T-T-----TGT---------------------TTA---------------CAG-------ATTT---TTACAAGATTTATGGGACTCTGCGCCAAATGTAGTTTTCT--GGAA-TTTTCT-----CTACTACTTTTAT-TT----T-----A---GGA-AAC--TGAAA-TTC--AAT---ATATGGTa
gi|4 : tgaactattttttgtactttagtgttataaatcctttgttggggaggtgaagaaATCTTCA-TCATACTC-TACTGGT-GAAGACGCATTG-GGGACTACTAGTT------TCCCT--CTATTCATCTGTATG--TA--T--GT----TGCAAATTT---GTTTTCTGG---TCTC----TTT-CTC-TA-----G------------AA--TT-TGGTA--------------CTAG--TA---------TGTTATTTGTT----AA--TG--TAT-------------A-----A---------TTAA-ACAGC--TCATTGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCACCA--------TG---------------AA-GTC--TAAAAATTT--GAT---GT-TA-TTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTAT-----------------caagtttgagactttcatttgaacaaatatttgtaagattttgtttcatgcttgaccgaacttgaattcctctactctgtttagttttccgtattttcttcatggtacatttt
gi|5 : tatTTT---GTTTGGTGGA--TTTT----TTT-TTT-TAATCATGTGCTGATGCTTTGAGTTTATAGGAAACTGAAA-----TTTTG--TA---------TCTGATTTGCTTTTAAA--CG--TA------TGT---------------------TTAA-------------GCATTTATTTTTCTT---TTACAAGAGAAATGGGATTTTATGCTAAATGTAGTTTTTC--AGA------CT-----CCACTA--------Tt
gi|6 : gtctattaattCTCTACTGGT-GAAGACGCA--TTGGGACTACTAGTT------TCCCT--CTATTCATCTGTATG--TA--T--GT----TGCAAATTT---GTTTTCTGG---TCTC----TTT-CTC-TA-----G------------AA--TT-TGGTA--------------CTAG--TA---------TGTTATTTGTT----AA--TG--TAT-------------A-----A---------TTAA-ACAGC--TCATCGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCAC-----------A----T-----G---A-A-GTC--TAAAAATTT--G-T---ATTTA-TTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTAT-----------------tctctaacttaggaaatgaaaattcaatagacctagagtaaatttattttcatcatgtatttcaacgaaaataggacttagtttcatggttgacttctttaatgtttgtctagttcat
gi|7 : ta--G-GGGAATATTTGTTTGCAC-TCCGC--CCGTCCATCAGTCCG--TC--G--GT----CTTAAATTA---ATTTTACGGAC-----------T-TTT-T----------------------------------TGAAA-----TTTGG--TT---------TGTACTTTACT----AA--TG--TA------TGTTT---A-----C------------A-GT--T--TCGCCGCAGTAGTGTGACTTGAATAATGAGAATTATTAAACTTTATGTCGAGCATAGTTTGCCAAGTGTTTTTTTTTTTTCCCACCA--------TGCTTTT-----G----GA-ATC--CGATG-TGT--GAA---ATGTAGTTACCTAGCGAGTACACACGGAACGAt
gi|8 : aa--G-GGTACTAC-AATTT---C-CCTCT--CTGTCTGTTTTTAAG--TTCGTCTGC----CACAAATTA---GTTTTCCGGAC---TT----TTT-TTCGCA-T--TG--------TTTTGA--TT-TAGGAAGTTAAAA-----TTTGG--CG---------TGTGTTCAGCT----CA--TGCATGT-----TGAAT---------T---------TCAA-AT--T--CCATCACAGTTGACTTATTT---TCACAAGATTTA-AGGACTTTGTACCCAATGTAG-TTTCC--GGACTTTT
gi|9 : aaaGAAA-----TTTGG--AA---------TGTGATTTGCT----AA--TG--CAT------GTAT---A-----CAAATCAAG-TTAAAGT--C--TCGTCACAGTTGACTG---T---TTAAAAGATATATGAAATTCTGTGCCAGATGTAATTTTCA--GGA-GTTTCCT-----CCACTA--------TG----TTTTAAGTTTAGA-AAG--TGAAA-TTT--TAT---GT---------TA------AGATAAA-----AGTCTCATTTTTGTCACAGTTGACCTAT-----------------
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGAAATTTCTGACAAAAATTGTAAAACTTTTCAATGGTTGACTGAATGAATTCTTGTGCTTTGTCTAGTTTTCTGTAATTTTCGTTTTTAT
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 11 1 1111 333333 11111 3333333333333 44444444444444444444444444444 111 111111111 111111111 77777777777777777777777777777 111111 111 55555555555555555555555555555 1 00000000000000000000
lowQualScore : 99 7 5 3 8 0000 000000 2 66 11111 0 55 3333333333333 2 7777 0 77777777777777777777777777777 0 77 3 1 444 66666 1 000000000 2 000000000 6666 66 55555555555555555555555555555 1 000000 0 2 2 555 1 0 0 0 44 222 99999 1 33333333333333333333333333333 5 0 66 0 7777 888 77 33 22 1 333 3 2 0 2 33333333333333333333
lowQualScore : .. . . . . .... ...... . .. ..... . .. ............. . .... . ............................. . .. . . ... ..... . ......... . ......... .... .. ............................. . ...... . . . ... . . . . .. ... ..... . ............................. . . .. . .... ... .. .. .. . ... . . . . ....................
lowQualScore : 33 3 5 2 8 7777 444444 2 11 11111 3 55 9999999999999 5 4444 5 55555555555555555555555555555 3 99 3 8 777 77777 0 777777777 7 777777777 1111 88 44444444444444444444444444444 6 000000 2 2 6 888 4 8 2 8 66 000 11111 3 88888888888888888888888888888 0 8 99 0 2222 888 99 44 77 7 999 2 2 8 5 00000000000000000000
consensus : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---C--CCCT--CTGTCCGTCC----GTCTG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAA-----TTTGGTA---------TGT-GATT---------TGCT----AA--TGTATN--GT-T--A-----C---------TT-AAGT--TT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
Reference ( family-1831 ) : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---C-TCCCT--CTGTCCGTCC----GTCTG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAA-----TTTGGNA---------TGT-GATT---------TGCT----AA--TGTATT--GT-T--A-----C---------TT-AAGT--TT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCT--------TT---AGG----GGATATCCAGAAATA
gi|1 : --G-GGGACAACTAGTTT---C--CTCT--CTGTCTGTTT----GTCAA--TC--TTT------TACAACTTAATAGTTTTTCAGACTTTT-----TAA------ACCATG--------CTTTAA--TT-ATGGTAGCTGAAA-----TTGGGTA---------TGC-AATT---------TGCT----AC--TGTATG--TT-T--A-----C---------AA-AAAT--CTATTTTTATAGTCCACTGGTTT---TTCCAAGATATATGGGACTCAA-GCTGAATGTATTTTTCC--TGACTTTT-CT-----CCACTA-------TGGTTTATTGT-----A---GGA-AACAAGAAAA-TTT--AATATCATGTGGTTTTCTAGTGATTACATAAAGATTGAGTTTGACTTT------GGTTGACTT
gi|10 : ataactcaatttttgtctttattctaatggtaaaatcaaagTCGCAGTTGAATG-TAT---TTACGAGTCTTATGGGAGGTTGTGGTGAGTATAGTTTTCT--AGAC--CTTCT-----TC---A-------TG--------T-------------ATT--TG--A-TTTAAGATAT---GTTGTTTCCCAATGAGTCAACACAGATCAAGTACAACTTTTG-TACGTTTGACTT---GTTCTAGCAGAAATTGTAAGGCTTAGGATATTCAAAAATAtcatttattctaattagtaagacatagtttcatggttgactgaacatttttaatcatttacttcatattttttttattgggtgatttt
gi|11 : CATCATTATTTAGTCCCCTACCAGCAAA----GC-----TGGACTGTTAGTTT---CATCTCTGTCTGTCTATCA----ATCTG--TC--TATTTAAAATACAACTTT---TTTTTCTGAACTTTTTTTTTTTTT--TTTACCATG--------TTTTGA--TT-TAGGATGGTAAAA-----TTTGGAA---------TGT-GATT---------T
gi|12 : tatc--TT-TAGAAAGCTGTAA-----TTTGGTACCAGGGGTATGT-ATTT---------TGTT----AA--TGTATG--TT-T--A-----CAGATCAAGTCT-AGGT--TT--CGTCATGGTTGGATGATT------------TTTATGGAACTCTGTGCGGAATATATTTTTCT--GGA-TTTTTAT-----CTATTA-------TG--------T-----G---
gi|13 : cagTCTG--TCCATCCGT----CAAAACTTA---GTGGTCCAGA-TTTG-----TTTT--TTCATCATG--------CTTTGA--AA-TAGGAACCTGAAATATGGTTTGACT---------TGT-GATT---------TACT----AA--TGTATG--TT-T--AAAGATCAAGG-----TG-AAGT--TT--TGTCATAGTTGA
gi|14 : TAAAA-----TTCAGGA---------TGT-GTTTACCAGTGCATGCT----TA--TGTATCAAGT-T-------------------T-AAGT--TT--CGCCATAGTTGAGTGATTT---TGACAAGATATAAGATACTTTATATCAAA-ATAGTTTTCC--GAACTGTTTTT-----C
gi|15 : tCT--CCGTCCGTCC----GTCAGCTTT--TCTAT----CATAACGCT---GTTTTCTGGACTTAT-----TTT------ATTATA--------CTCTGA--TG-TAGGAGGTTGGAA-----TTTGGTA---------CATGGGTT---------TACT----AA--a
gi|17 : aTAAAA-----TTTGGAA---------TGT-GATT---------TGCT----AA--
gi|2 : CATCTTT-CTTATTCTCCAACCAGCAGAAGA-GAA--G-GAAACTACTAGTTCATAC-TCCAT--CTGTCTGTCT----GTCTG--CCCTTCTGT----TCCAACTTA---ATATTCTGTACCTTT-----TTTTATTTTATCATC--------CTTTGA--TT-TAGGAGCCTGAAA-----TTTGACA---------TGT-GGTT---------TACT----AAATTGTATT--GCAT--A-----C---------TT-AAGT--TT--CGTTGCAGTTGAATGAATT---CTATAAG-TTTATGGGACTTGGTGCAGAATATAGTTTTCC--AGACTTTTTTT-----CCACTA-------TA--------T-----G---AGATATC--TGAAA-TTT--GATGT---GTGGTTTCCCAATGAGTAGATACAAACGAAATTTCAC--ATGTTATGGAGGAGTTATGGTCCT--------TT---AGG----GGATATCCAGAAATAcaatttaacagatcaagttcaaagttttgtc
gi|3 : atAGTTT---C--CACT--TTGTCAGTTC----ATCTG--TC--ACTAT-----------TA---GTTTTTCAGACTTTT----------------------------CTCTGAA-CT-T-------TGAAA-----TTTGGTT---------TGT-GATT---------TTCT----AAA-TGT-TT--GT-T-------------------T-A--------------CAG-------ATTT---TTACAAGATTTATGGGACTCTGCGCCAAATGTAGTTTTCT--GGAA-TTTTCT-----CTACTACTTTTATTT--------T-----A---GGA-AAC--TGAAA-TTC--AATAT---ATGGTa
gi|4 : tgaactattttttgtactttagtgttataaatcctttgttggggaggtgaagaaATCTTCA-TCAT-ACTCTACTGGT-GAAGACGCATTG-GGGACTACTAGTTT---C---CCT--CTATTCATCT----GTATG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA--------------CTAGTA---------TGT-TATT---------TGTT----AA--TGTAT---------A-----A---------TT-AAACAGCT--CATTGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCACCA-------TG-------------------AA-GTC--TAAAAATTT--GAT-----GTTATTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATcaagtttgagactttcatttgaacaaatatttgtaagattttgtttcatgcttgaccgaacttgaattcctctactctgtttagttttccgtattttcttcatggtacatttt
gi|5 : tatTTT---GTTTGGTGGATTTTT-----TTTT--TTAATCATGTGCTGATGCTTTGAGTTTATAGGAAACTGAAA-----TTTTGTA---------TCT-GATT---------TGCTTTTAAA--CGTA-T--GT--------------------TT-AA------------GCATTTATTTTTCTT---TTACAAGAGAAATGGGATTTTATGCTAAATGTAGTTTTTC--AGA------CT-----CCACTA-------Tt
gi|6 : gtctattaattCTCTACTGGT-GAAGACGCA--TTGGGACTACTAGTTT---C---CCT--CTATTCATCT----GTATG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA--------------CTAGTA---------TGT-TATT---------TGTT----AA--TGTAT---------A-----A---------TT-AAACAGCT--CATCGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCAC----------A--------T-----G---A-A-GTC--TAAAAATTT--G-TAT---TTA-TTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATtctctaacttaggaaatgaaaattcaatagacctagagtaaatttattttcatcatgtatttcaacgaaaataggacttagtttcatggttgacttctttaatgtttgtctagttcat
gi|7 : taA--G-GGGAATATTTGTTT---G--CACT--CCGCCCGTCC----ATCAG--TCCGTCGGT----CTTAAATTA---ATTTTACGGACT-----------T--TTT---------------------------------TGAAA-----TTTGGTT---------TGT-ACTT---------TACT----AA--TGTATG--TT-T--A-----C-------------AGT--TT--CGCCGCAGTAGTGTGACTTGAATAATGAGAATTATTAAACTTTATGTCGAGCATAGTTTGCCAAGTGTTTTTTTTTTTTCCCACCA-------TGCTTT----T-----G----GA-ATC--CGATG-TGT--GAAAT---GTAGTTACCTAGCGAGTACACACGGAACGAt
gi|8 : aA--G-GGTACTAC-AATTT---C-CCTCT--CTGTCTGTTTTTAAGTTCG--TC--T--GC----CACAAATTA---GTTTTCCGGACTTTT-----TTTC--GC-AT--TG--------TTTTGA--TT-TAGGAAGTTAAAA-----TTTGGCG---------TGT-GTTC---------AGCT----CA--TGCA-T--GT-TGAA-----T---------TTCAAAT--TC--CATCACAGTTGACTTATTT---TCACAAGATTTA-AGGACTTTGTACCCAATGTAG-TTTCC--GGACTTTT
gi|9 : aaGAAA-----TTTGGAA---------TGT-GATT---------TGCT----AA--TGCA-T--GTAT--A-----CAAATCAAG-TTAAAGT--CT--CGTCACAGTTGACTG---T---TTAAAAGATATATGAAATTCTGTGCCAGATGTAATTTTCA--GGA-GTTTCCT-----CCACTA-------TG--------TTTTAAGTTTAGA-AAG--TGAAA-TTT----TAT---GT-------TA------AGATAAA-----AGTCTCATTTTTGTCACAGTTGACCTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGAAATTTCTGACAAAAATTGTAAAACTTTTCAATGGTTGACTGAATGAATTCTTGTGCTTTGTCTAGTTTTCTGTAATTTTCGTTTTTAT
Alignments
lowQualScore : 11 1 1111 1111 11111 3333333333333 44444444444444444444444444444 111 1111111111111 99999999999999999999999999 55555555555555555555555555555 1 3333333333333 2222
lowQualScore : 99 7 5 3 8 0000 888 0000 00000 88888 55 3333333333333 2 7777 0 77777777777777777777777777777 0 77 3 1 444 4444444444444 2 1 6666 33 55555555555555555555555555 777 0 1 2 555 1 0 0 0 44 999 1 99999 1 33333333333333333333333333333 5 0 66 0 0 7777 888 77 33 22 1 333 5 2 0 2 8888888888888 4444
lowQualScore : .. . . . . .... ... .... ..... ..... .. ............. . .... . ............................. . .. . . ... ............. . . .... .. .......................... ... . . . ... . . . . .. ... . ..... . ............................. . . .. . . .... ... .. .. .. . ... . . . . ............. ....
lowQualScore : 33 3 5 2 8 7777 888 3333 11111 88888 55 9999999999999 5 4444 5 55555555555555555555555555555 3 99 3 8 777 5555555555555 7 3 1111 99 44444444444444444444444444 000 2 0 6 888 4 8 2 8 66 222 2 11111 3 88888888888888888888888888888 0 8 99 4 0 2222 888 99 44 77 7 999 7 2 8 5 0000000000000 0000
consensus : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTATGNT-T--A-----C---------TT-AAGTTT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
Reference ( family-1831 ) : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTATNGT-T--A-----C---------TT-AAGTTT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
gi|1 : --G-GGGACAACTAGTTT---CCT-C-TCTGTCTGTTT----GTC----AA--TC--TTT------TACAACTTAATAGTTTTTCAGACTTTT-----TAA------ACCATG--------CTTTAA--TT-ATGGTAGCTGAAATTGGGT---A---------TGC-AATTTGCT----AC--TGTATGTT-T--A-----C---------AA-AAATCTATTTTTATAGTCCACTGGTTT---TTCCAAGATATATGGGACTCAA-GCTGAATGTATTTTTCC--TGACTTTT-CT-----CCACTA-------TGGTTTATTGT-----A---GGA-AACAAGAAAA-TTT--AATATCATGTGGTTTTCTAGTGATTACATAAAGATTGAGTTTGACTTT------GGTTGACTT
gi|10 : ataactcaatttttgtctttattctaatggtaaaatcaaagTCGCAGTTGAATG-TAT---TTACGAGTCTTATGGGAGGTTGTGGTGAGTATAGTTTTCT--AGACCTT--CT-----TCA----------TG--------T-------------ATT--TGA---TTTAAGATAT---GTTGTTTCCCAATGAGTCAACACAGATCAAGTACAACTTTTGT-ACGTTTGACTT---GTTCTAGCAGAAATTGTAAGGCTTAGGATATTCAAAAATAtcatttattctaattagtaagacatagtttcatggttgactgaacatttttaatcatttacttcatattttttttattgggtgatttt
gi|11 : CATCATTATTTAGTCCCCTACCAGCAAA----GC-----TGGACTGTTAGTTT---CAT-C-TCTGTCTGTCT----ATCAATCTG--TC--TATTTAAAATACAACTTT---TTTTTCTGAACTTTTTTTTTTTTT--TTTACCATG--------TTTTGA--TT-TAGGATGGTAAAATTTGGA---A---------TGT-GATTT
gi|12 : tatc--TT-TAGAAAGCTGTAATTTGGT---ACCAGGGGTATGT-ATTTTGTT----AA--TGTATGTT-T--A-----CAGATCAAGTCT-AGGTTT--CGTCATGGTTGGATGATT------------TTTATGGAACTCTGTGCGGAATATATTTTTCT--GGA-TTTTTAT-----CTATTA-------TG--------T-----G---
gi|13 : cagTC----TG--TCCATCCGT----CAAAACTTA---GTGGTCCAGA-TTTG-----TTTT--TTCATCATG--------CTTTGA--AA-TAGGAACCTGAAATATGGTTTGACT-------TGT-GATTTACT----AA--TGTATGTT-T--AAAGATCAAGG-----TG-AAGTTT--TGTCATAGTTGA
gi|14 : TAAAATTCAGG---A---------TGT-G-TTTACC----AG--TGCATGCT-T--A-----TGTATCAAGTTT-AAGTTT--CGCCATAGTTGAGTGATTT---TGACAAGATATAAGATACTTTATATCAAA-ATAGTTTTCC--GAACTGTTTTT-----C
gi|15 : t-C-TCCGTCCGTCC----GTC----AGCTTT--TCTAT----CATAACGCT---GTTTTCTGGACTTAT-----TTT------ATTATA--------CTCTGA--TG-TAGGAGGTTGGAATTTGGT---A---------CATGGGTTTACT----AA--a
gi|17 : aTAAAATTTGGA---A---------TGT-GATTTGCT----AA--
gi|2 : CATCTTT-CTTATTCTCCAACCAGCAGAAGA-GAA--G-GAAACTACTAGTTCATACTC-CATCTGTCTGTCT----GTC----TG--CCCTTCTGT----TCCAACTTA---ATATTCTGTACCTTT-----TTTTATTTTATCATC--------CTTTGA--TT-TAGGAGCCTGAAATTTGAC---A---------TGT-GGTTTACT----AAATTGTATTGCAT--A-----C---------TT-AAGTTT--CGTTGCAGTTGAATGAATT---CTATAAG-TTTATGGGACTTGGTGCAGAATATAGTTTTCC--AGACTTTTTTT-----CCACTA-------TA--------T-----G---AGATATC--TGAAA-TTT--GATGT---GTGGTTTCCCAATGAGTAGATACAAACGAAATTTCAC--ATGTTATGGAGGAGTTATGGTCCT--------TT---AGG----GGATATCCAGAAATAcaatttaacagatcaagttcaaagttttgtc
gi|3 : atAGTTT---CCA-C-TTTGTCAGTTC----ATC----TG--TC--ACTAT-----------TA---GTTTTTCAGACTTTT----------------------------CTCTGAA-CT-T-------TGAAATTTGGT---T---------TGT-GATTTTCT----AA-----AT----------------------------GTTT---------GTTTACAGATTT---TTACAAGATTTATGGGACTCTGCGCCAAATGTAGTTTTCT--GGAA-TTTTCT-----CTACTACTTTTATTT--------T-----A---GGA-AAC--TGAAA-TTC--AATAT---ATGGTa
gi|4 : tgaactattttttgtactttagtgttataaatcctttgttggggaggtgaagaaATCTTCA-TCAT-ACTCTACTGGT-GAAGACGCATTG-GGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTATAAT-T--AAA---C-------------AGCT---CATTGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCACCA-------TG-------------------AA-GTC--TAAAAATTT--GAT-----GTTATTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATcaagtttgagactttcatttgaacaaatatttgtaagattttgtttcatgcttgaccgaacttgaattcctctactctgtttagttttccgtattttcttcatggtacatttt
gi|5 : tatTTT---GTTTGGTGGATTTTT-----TTTT--TTAATCATGTGCTGATGCTTTGAGTTTATAGGAAACTGAAATTTTGT---A---------TCT-GATTTGCTTTTAAA--CGTAT-GT--------------------TT-AA----------GCATTTATTTTTCTT---TTACAAGAGAAATGGGATTTTATGCTAAATGTAGTTTTTC--AGA------CT-----CCACTA-------Tt
gi|6 : gtctattaattCTCTACTGGT-GAAGACGCA--TTGGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTATAAT-T--AAA---C-------------AGCT---CATCGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCAC----------A--------T-----G---A-A-GTC--TAAAAATTT--G-TAT---TTA-TTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATtctctaacttaggaaatgaaaattcaatagacctagagtaaatttattttcatcatgtatttcaacgaaaataggacttagtttcatggttgacttctttaatgtttgtctagttcat
gi|7 : taA--G-GGGAATATTTGTTT---GCA-C-TCCGCCCGTCC----ATC----AG--TCCGTCGGT----CTTAAATTA---ATTTTACGGACT-----------T--TTT---------------------------------TGAAATTTGGT---T---------TGT-ACTTTACT----AA--TGTATGTT-T--A-----C-------------AGTTT--CGCCGCAGTAGTGTGACTTGAATAATGAGAATTATTAAACTTTATGTCGAGCATAGTTTGCCAAGTGTTTTTTTTTTTTCCCACCA-------TGCTTT----T-----G----GA-ATC--CGATG-TGT--GAAAT---GTAGTTACCTAGCGAGTACACACGGAACGAt
gi|8 : aA--G-GGTACTAC-AATTT---CCCTC-TCTGTCTGTTTTTAAGTT----CG--TC--T--GC----CACAAATTA---GTTTTCCGGACTTTT-----TTTC--GC-AT--TG--------TTTTGA--TT-TAGGAAGTTAAAATTTGGC---G---------TGT-GTTCAGCT----CA--TGCAT-GT-TGAA-----T---------TTCAAATTC--CATCACAGTTGACTTATTT---TCACAAGATTTA-AGGACTTTGTACCCAATGTAG-TTTCC--GGACTTTT
gi|9 : aaGAAATTTGGA---A---------TGT-GATTTGCT----AA--TGCAT-GTAT--A-----CAAATCAAG-TTAAAGTCT--CGTCACAGTTGACTG---T---TTAAAAGATATATGAAATTCTGTGCCAGATGTAATTTTCA--GGA-GTTTCCT-----CCACTA-------TG--------TTTTAAGTTTAGA-AAG--TGAAA-TTT----TAT---GT-------TA------AGATAAA-----AGTCTCATTTTTGTCACAGTTGACCTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGAAATTTCTGACAAAAATTGTAAAACTTTTCAATGGTTGACTGAATGAATTCTTGTGCTTTGTCTAGTTTTCTGTAATTTTCGTTTTTAT
Alignments
lowQualScore : 11 1 1111 1111 11111 3333333333333 44444444444444444444444444444 111 1111111111111 8888888888888888888 55555555555555555555555555555 1 3333333333333 2222
lowQualScore : 99 7 5 3 8 0000 888 0000 00000 88888 55 3333333333333 2 7777 0 77777777777777777777777777777 0 77 3 1 444 4444444444444 2 1 6666 33 3 1 2222222222222222222 0 999 0 2 2 555 1 0 0 0 44 999 1 99999 1 33333333333333333333333333333 5 0 66 0 0 7777 888 77 33 22 1 333 5 2 0 2 8888888888888 4444
lowQualScore : .. . . . . .... ... .... ..... ..... .. ............. . .... . ............................. . .. . . ... ............. . . .... .. . . ................... . ... . . . ... . . . . .. ... . ..... . ............................. . . .. . . .... ... .. .. .. . ... . . . . ............. ....
lowQualScore : 33 3 5 2 8 7777 888 3333 11111 88888 55 9999999999999 5 4444 5 55555555555555555555555555555 3 99 3 8 777 5555555555555 7 3 1111 99 3 0 0000000000000000000 4 000 2 2 6 888 4 8 2 8 66 222 2 11111 3 88888888888888888888888888888 0 8 99 4 0 2222 888 99 44 77 7 999 7 2 8 5 0000000000000 0000
consensus : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTAT-GTTTA-----C---------TT--AAGTTT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
Reference ( family-1831 ) : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTAT-GNTTA-----C---------TT--AAGTTT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
gi|1 : --G-GGGACAACTAGTTT---CCT-C-TCTGTCTGTTT----GTC----AA--TC--TTT------TACAACTTAATAGTTTTTCAGACTTTT-----TAA------ACCATG--------CTTTAA--TT-ATGGTAGCTGAAATTGGGT---A---------TGC-AATTTGCT----AC--TGTAT-GTTTA-----C---------AA--AAATCTATTTTTATAGTCCACTGGTTT---TTCCAAGATATATGGGACTCAA-GCTGAATGTATTTTTCC--TGACTTTT-CT-----CCACTA-------TGGTTTATTGT-----A---GGA-AACAAGAAAA-TTT--AATATCATGTGGTTTTCTAGTGATTACATAAAGATTGAGTTTGACTTT------GGTTGACTT
gi|10 : ataactcaatttttgtctttattctaatggtaaaatcaaagTCGCAGTTGAATG-TAT---TTACGAGTCTTATGGGAGGTTGTGGTGAGTATAGTTTTCT--AGACCTT--CT-----TCA----------TG--------T-------------ATT--TGA---TTTAAGATAT---GTTGTTTCCCAATGAGTCAACACAGATCAAGTACAACTTTTGT-ACGTTTGACTT---GTTCTAGCAGAAATTGTAAGGCTTAGGATATTCAAAAATAtcatttattctaattagtaagacatagtttcatggttgactgaacatttttaatcatttacttcatattttttttattgggtgatttt
gi|11 : CATCATTATTTAGTCCCCTACCAGCAAA----GC-----TGGACTGTTAGTTT---CAT-C-TCTGTCTGTCT----ATCAATCTG--TC--TATTTAAAATACAACTTT---TTTTTCTGAACTTTTTTTTTTTTT--TTTACCATG--------TTTTGA--TT-TAGGATGGTAAAATTTGGA---A---------TGT-GATTT
gi|12 : tatc--TT-TAGAAAGCTGTAATTTGGT---ACCAGGGGTATGT-ATTTTGTT----AA--TGTAT-GTTTA-----CAGATCAAGTCT--AGGTTT--CGTCATGGTTGGATGATT------------TTTATGGAACTCTGTGCGGAATATATTTTTCT--GGA-TTTTTAT-----CTATTA-------TG--------T-----G---
gi|13 : cagTC----TG--TCCATCCGT----CAAAACTTA---GTGGTCCAGA-TTTG-----TTTT--TTCATCATG--------CTTTGA--AA-TAGGAACCTGAAATATGGTTTGACT-------TGT-GATTTACT----AA--TGTAT-GTTTAAAGATCAAGG-----TG--AAGTTT--TGTCATAGTTGA
gi|14 : TAAAATTCAGG---A---------TGT-G-TTTACC----AG--TGCAT-GCTTA-----TGTATCAAGTTT--AAGTTT--CGCCATAGTTGAGTGATTT---TGACAAGATATAAGATACTTTATATCAAA-ATAGTTTTCC--GAACTGTTTTT-----C
gi|15 : t-C-TCCGTCCGTCC----GTC----AGCTTT--TCTAT----CATAACGCT---GTTTTCTGGACTTAT-----TTT------ATTATA--------CTCTGA--TG-TAGGAGGTTGGAATTTGGT---A---------CATGGGTTTACT----AA--a
gi|17 : aTAAAATTTGGA---A---------TGT-GATTTGCT----AA--
gi|2 : CATCTTT-CTTATTCTCCAACCAGCAGAAGA-GAA--G-GAAACTACTAGTTCATACTC-CATCTGTCTGTCT----GTC----TG--CCCTTCTGT----TCCAACTTA---ATATTCTGTACCTTT-----TTTTATTTTATCATC--------CTTTGA--TT-TAGGAGCCTGAAATTTGAC---A---------TGT-GGTTTACT----AAATTGTATTGCATA-----C---------TT--AAGTTT--CGTTGCAGTTGAATGAATT---CTATAAG-TTTATGGGACTTGGTGCAGAATATAGTTTTCC--AGACTTTTTTT-----CCACTA-------TA--------T-----G---AGATATC--TGAAA-TTT--GATGT---GTGGTTTCCCAATGAGTAGATACAAACGAAATTTCAC--ATGTTATGGAGGAGTTATGGTCCT--------TT---AGG----GGATATCCAGAAATAcaatttaacagatcaagttcaaagttttgtc
gi|3 : atAGTTT---CCA-C-TTTGTCAGTTC----ATC----TG--TC--ACTAT-----------TA---GTTTTTCAGACTTTT----------------------------CTCTGAA-CT-T-------TGAAATTTGGT---T---------TGT-GATTTTCT----AA-----AT-GTTTG-----T---------TT--A------------CAG-------ATTT---TTACAAGATTTATGGGACTCTGCGCCAAATGTAGTTTTCT--GGAA-TTTTCT-----CTACTACTTTTATTT--------T-----A---GGA-AAC--TGAAA-TTC--AATAT---ATGGTa
gi|4 : tgaactattttttgtactttagtgttataaatcctttgttggggaggtgaagaaATCTTCA-TCAT-ACTCTACTGGT-GAAGACGCATTG-GGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTAT-AATTAAA---C--------------AGCT---CATTGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCACCA-------TG-------------------AA-GTC--TAAAAATTT--GAT-----GTTATTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATcaagtttgagactttcatttgaacaaatatttgtaagattttgtttcatgcttgaccgaacttgaattcctctactctgtttagttttccgtattttcttcatggtacatttt
gi|5 : tatTTT---GTTTGGTGGATTTTT-----TTTT--TTAATCATGTGCTGATGCTTTGAGTTTATAGGAAACTGAAATTTTGT---A---------TCT-GATTTGCTTTTAAA--CGTAT-GTTTA-------------------A-----------GCATTTATTTTTCTT---TTACAAGAGAAATGGGATTTTATGCTAAATGTAGTTTTTC--AGA------CT-----CCACTA-------Tt
gi|6 : gtctattaattCTCTACTGGT-GAAGACGCA--TTGGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTAT-AATTAAA---C--------------AGCT---CATCGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCAC----------A--------T-----G---A-A-GTC--TAAAAATTT--G-TAT---TTA-TTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATtctctaacttaggaaatgaaaattcaatagacctagagtaaatttattttcatcatgtatttcaacgaaaataggacttagtttcatggttgacttctttaatgtttgtctagttcat
gi|7 : taA--G-GGGAATATTTGTTT---GCA-C-TCCGCCCGTCC----ATC----AG--TCCGTCGGT----CTTAAATTA---ATTTTACGGACT-----------T--TTT---------------------------------TGAAATTTGGT---T---------TGT-ACTTTACT----AA--TGTAT-GTTTA-----C--------------AGTTT--CGCCGCAGTAGTGTGACTTGAATAATGAGAATTATTAAACTTTATGTCGAGCATAGTTTGCCAAGTGTTTTTTTTTTTTCCCACCA-------TGCTTT----T-----G----GA-ATC--CGATG-TGT--GAAAT---GTAGTTACCTAGCGAGTACACACGGAACGAt
gi|8 : aA--G-GGTACTAC-AATTT---CCCTC-TCTGTCTGTTTTTAAGTT----CG--TC--T--GC----CACAAATTA---GTTTTCCGGACTTTT-----TTTC--GC-AT--TG--------TTTTGA--TT-TAGGAAGTTAAAATTTGGC---G---------TGT-GTTCAGCT----CA--TGCAT-GTTGA-----A---------TTTCAAATTC--CATCACAGTTGACTTATTT---TCACAAGATTTA-AGGACTTTGTACCCAATGTAG-TTTCC--GGACTTTT
gi|9 : aaGAAATTTGGA---A---------TGT-GATTTGCT----AA--TGCAT-GTATA-----CAAATCAAG-TTA-AAGTCT--CGTCACAGTTGACTG---T---TTAAAAGATATATGAAATTCTGTGCCAGATGTAATTTTCA--GGA-GTTTCCT-----CCACTA-------TG--------TTTTAAGTTTAGA-AAG--TGAAA-TTT----TAT---GT-------TA------AGATAAA-----AGTCTCATTTTTGTCACAGTTGACCTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGAAATTTCTGACAAAAATTGTAAAACTTTTCAATGGTTGACTGAATGAATTCTTGTGCTTTGTCTAGTTTTCTGTAATTTTCGTTTTTAT
Alignments
lowQualScore : 11 1 1111 1111 11111 3333333333333 44444444444444444444444444444 111 1111111111111 66666666666666666666666666666 55555555555555555555555555555 1 3333333333333 2222
lowQualScore : 99 7 5 3 8 0000 888 0000 00000 88888 55 3333333333333 2 7777 0 77777777777777777777777777777 0 77 3 1 444 4444444444444 2 1 6666 33 3 55555555555555555555555555555 0 2 2 555 1 0 0 0 44 999 1 99999 1 33333333333333333333333333333 5 0 66 0 0 7777 888 77 33 22 1 333 5 2 0 2 8888888888888 4444
lowQualScore : .. . . . . .... ... .... ..... ..... .. ............. . .... . ............................. . .. . . ... ............. . . .... .. . ............................. . . . ... . . . . .. ... . ..... . ............................. . . .. . . .... ... .. .. .. . ... . . . . ............. ....
lowQualScore : 33 3 5 2 8 7777 888 3333 11111 88888 55 9999999999999 5 4444 5 55555555555555555555555555555 3 99 3 8 777 5555555555555 7 3 1111 99 3 22222222222222222222222222222 2 2 6 888 4 8 2 8 66 222 2 11111 3 88888888888888888888888888888 0 8 99 4 0 2222 888 99 44 77 7 999 7 2 8 5 0000000000000 0000
consensus : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTAT-GTTTA-----C---------TT--AAGT--TT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
Reference ( family-1831 ) : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTAT-GTTTA-----C---------TT--AAGT--TT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
gi|1 : --G-GGGACAACTAGTTT---CCT-C-TCTGTCTGTTT----GTC----AA--TC--TTT------TACAACTTAATAGTTTTTCAGACTTTT-----TAA------ACCATG--------CTTTAA--TT-ATGGTAGCTGAAATTGGGT---A---------TGC-AATTTGCT----AC--TGTAT-GTTTA-----C---------AA--AAAT--CTATTTTTATAGTCCACTGGTTT---TTCCAAGATATATGGGACTCAA-GCTGAATGTATTTTTCC--TGACTTTT-CT-----CCACTA-------TGGTTTATTGT-----A---GGA-AACAAGAAAA-TTT--AATATCATGTGGTTTTCTAGTGATTACATAAAGATTGAGTTTGACTTT------GGTTGACTT
gi|10 : ataactcaatttttgtctttattctaatggtaaaatcaaagTCGCAGTTGAATG-TAT---TTACGAGTCTTATGGGAGGTTGTGGTGAGTATAGTTTTCT--AGACCTT--CT-----TCA----------TG--------T-------------ATT--TGA---TTTAAGATAT---GTTGTTTCCCAATGAGTCAACACAGATCAAGTACAACTTTTGT-ACGTTTGACTT---GTTCTAGCAGAAATTGTAAGGCTTAGGATATTCAAAAATAtcatttattctaattagtaagacatagtttcatggttgactgaacatttttaatcatttacttcatattttttttattgggtgatttt
gi|11 : CATCATTATTTAGTCCCCTACCAGCAAA----GC-----TGGACTGTTAGTTT---CAT-C-TCTGTCTGTCT----ATCAATCTG--TC--TATTTAAAATACAACTTT---TTTTTCTGAACTTTTTTTTTTTTT--TTTACCATG--------TTTTGA--TT-TAGGATGGTAAAATTTGGA---A---------TGT-GATTT
gi|12 : tatc--TT-TAGAAAGCTGTAATTTGGT---ACCAGGGGTATGT-ATTTTGTT----AA--TGTAT-GTTTA-----CAGATCAAGTCT--AGGT--TT--CGTCATGGTTGGATGATT------------TTTATGGAACTCTGTGCGGAATATATTTTTCT--GGA-TTTTTAT-----CTATTA-------TG--------T-----G---
gi|13 : cagTC----TG--TCCATCCGT----CAAAACTTA---GTGGTCCAGA-TTTG-----TTTT--TTCATCATG--------CTTTGA--AA-TAGGAACCTGAAATATGGTTTGACT-------TGT-GATTTACT----AA--TGTAT-GTTTAAAGATCAAGG-----TG--AAGT--TT--TGTCATAGTTGA
gi|14 : TAAAATTCAGG---A---------TGT-G-TTTACC----AG--TGCAT-GCTTA-----TGTATCAAGTTT--AAGT--TT--CGCCATAGTTGAGTGATTT---TGACAAGATATAAGATACTTTATATCAAA-ATAGTTTTCC--GAACTGTTTTT-----C
gi|15 : t-C-TCCGTCCGTCC----GTC----AGCTTT--TCTAT----CATAACGCT---GTTTTCTGGACTTAT-----TTT------ATTATA--------CTCTGA--TG-TAGGAGGTTGGAATTTGGT---A---------CATGGGTTTACT----AA--a
gi|17 : aTAAAATTTGGA---A---------TGT-GATTTGCT----AA--
gi|2 : CATCTTT-CTTATTCTCCAACCAGCAGAAGA-GAA--G-GAAACTACTAGTTCATACTC-CATCTGTCTGTCT----GTC----TG--CCCTTCTGT----TCCAACTTA---ATATTCTGTACCTTT-----TTTTATTTTATCATC--------CTTTGA--TT-TAGGAGCCTGAAATTTGAC---A---------TGT-GGTTTACT----AAATTGTATTGCATA-----C---------TT--AAGT--TT--CGTTGCAGTTGAATGAATT---CTATAAG-TTTATGGGACTTGGTGCAGAATATAGTTTTCC--AGACTTTTTTT-----CCACTA-------TA--------T-----G---AGATATC--TGAAA-TTT--GATGT---GTGGTTTCCCAATGAGTAGATACAAACGAAATTTCAC--ATGTTATGGAGGAGTTATGGTCCT--------TT---AGG----GGATATCCAGAAATAcaatttaacagatcaagttcaaagttttgtc
gi|3 : atAGTTT---CCA-C-TTTGTCAGTTC----ATC----TG--TC--ACTAT-----------TA---GTTTTTCAGACTTTT----------------------------CTCTGAA-CT-T-------TGAAATTTGGT---T---------TGT-GATTTTCT----AA-----AT-GTTTG-----T---------TT--A--------------CAG-------ATTT---TTACAAGATTTATGGGACTCTGCGCCAAATGTAGTTTTCT--GGAA-TTTTCT-----CTACTACTTTTATTT--------T-----A---GGA-AAC--TGAAA-TTC--AATAT---ATGGTa
gi|4 : tgaactattttttgtactttagtgttataaatcctttgttggggaggtgaagaaATCTTCA-TCAT-ACTCTACTGGT-GAAGACGCATTG-GGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTAT-----A-----A---------TT--AAACAGCT--CATTGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCACCA-------TG-------------------AA-GTC--TAAAAATTT--GAT-----GTTATTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATcaagtttgagactttcatttgaacaaatatttgtaagattttgtttcatgcttgaccgaacttgaattcctctactctgtttagttttccgtattttcttcatggtacatttt
gi|5 : tatTTT---GTTTGGTGGATTTTT-----TTTT--TTAATCATGTGCTGATGCTTTGAGTTTATAGGAAACTGAAATTTTGT---A---------TCT-GATTTGCTTTTAAA--CGTAT-GTTTA-------------------A-------------GCATTTATTTTTCTT---TTACAAGAGAAATGGGATTTTATGCTAAATGTAGTTTTTC--AGA------CT-----CCACTA-------Tt
gi|6 : gtctattaattCTCTACTGGT-GAAGACGCA--TTGGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTAT-----A-----A---------TT--AAACAGCT--CATCGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCAC----------A--------T-----G---A-A-GTC--TAAAAATTT--G-TAT---TTA-TTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATtctctaacttaggaaatgaaaattcaatagacctagagtaaatttattttcatcatgtatttcaacgaaaataggacttagtttcatggttgacttctttaatgtttgtctagttcat
gi|7 : taA--G-GGGAATATTTGTTT---GCA-C-TCCGCCCGTCC----ATC----AG--TCCGTCGGT----CTTAAATTA---ATTTTACGGACT-----------T--TTT---------------------------------TGAAATTTGGT---T---------TGT-ACTTTACT----AA--TGTAT-GTTTA-----C--------------AGT--TT--CGCCGCAGTAGTGTGACTTGAATAATGAGAATTATTAAACTTTATGTCGAGCATAGTTTGCCAAGTGTTTTTTTTTTTTCCCACCA-------TGCTTT----T-----G----GA-ATC--CGATG-TGT--GAAAT---GTAGTTACCTAGCGAGTACACACGGAACGAt
gi|8 : aA--G-GGTACTAC-AATTT---CCCTC-TCTGTCTGTTTTTAAGTT----CG--TC--T--GC----CACAAATTA---GTTTTCCGGACTTTT-----TTTC--GC-AT--TG--------TTTTGA--TT-TAGGAAGTTAAAATTTGGC---G---------TGT-GTTCAGCT----CA--TGCAT-GTTGA-----A---------TTTCAAAT--TC--CATCACAGTTGACTTATTT---TCACAAGATTTA-AGGACTTTGTACCCAATGTAG-TTTCC--GGACTTTT
gi|9 : aaGAAATTTGGA---A---------TGT-GATTTGCT----AA--TGCAT-GTATA-----CAAATCAAG-TTA-AAGT--CT--CGTCACAGTTGACTG---T---TTAAAAGATATATGAAATTCTGTGCCAGATGTAATTTTCA--GGA-GTTTCCT-----CCACTA-------TG--------TTTTAAGTTTAGA-AAG--TGAAA-TTT----TAT---GT-------TA------AGATAAA-----AGTCTCATTTTTGTCACAGTTGACCTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGAAATTTCTGACAAAAATTGTAAAACTTTTCAATGGTTGACTGAATGAATTCTTGTGCTTTGTCTAGTTTTCTGTAATTTTCGTTTTTAT
Alignments
lowQualScore : 11 1 1111 1111 11111 3333333333333 44444444444444444444444444444 111 1111111111111 66666666666666666666666666666 55555555555555555555555555555 1 3333333333333 2222
lowQualScore : 99 7 5 3 8 0000 888 0000 00000 88888 55 3333333333333 2 7777 0 77777777777777777777777777777 0 77 3 1 444 4444444444444 2 1 6666 33 3 55555555555555555555555555555 0 2 2 555 1 0 0 0 44 999 1 99999 1 33333333333333333333333333333 5 0 66 0 0 7777 888 77 33 22 1 333 5 2 0 2 8888888888888 4444
lowQualScore : .. . . . . .... ... .... ..... ..... .. ............. . .... . ............................. . .. . . ... ............. . . .... .. . ............................. . . . ... . . . . .. ... . ..... . ............................. . . .. . . .... ... .. .. .. . ... . . . . ............. ....
lowQualScore : 33 3 5 2 8 7777 888 3333 11111 88888 55 9999999999999 5 4444 5 55555555555555555555555555555 3 99 3 8 777 5555555555555 7 3 1111 99 3 22222222222222222222222222222 2 2 6 888 4 8 2 8 66 222 2 11111 3 88888888888888888888888888888 0 8 99 4 0 2222 888 99 44 77 7 999 7 2 8 5 0000000000000 0000
consensus : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTAT-GTTTA-----C---------TT--AAGT--TT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
Reference ( family-1831 ) : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTAT-GTTTA-----C---------TT--AAGT--TT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
gi|1 : --G-GGGACAACTAGTTT---CCT-C-TCTGTCTGTTT----GTC----AA--TC--TTT------TACAACTTAATAGTTTTTCAGACTTTT-----TAA------ACCATG--------CTTTAA--TT-ATGGTAGCTGAAATTGGGT---A---------TGC-AATTTGCT----AC--TGTAT-GTTTA-----C---------AA--AAAT--CTATTTTTATAGTCCACTGGTTT---TTCCAAGATATATGGGACTCAA-GCTGAATGTATTTTTCC--TGACTTTT-CT-----CCACTA-------TGGTTTATTGT-----A---GGA-AACAAGAAAA-TTT--AATATCATGTGGTTTTCTAGTGATTACATAAAGATTGAGTTTGACTTT------GGTTGACTT
gi|10 : ataactcaatttttgtctttattctaatggtaaaatcaaagTCGCAGTTGAATG-TAT---TTACGAGTCTTATGGGAGGTTGTGGTGAGTATAGTTTTCT--AGACCTT--CT-----TCA----------TG--------T-------------ATT--TGA---TTTAAGATAT---GTTGTTTCCCAATGAGTCAACACAGATCAAGTACAACTTTTGT-ACGTTTGACTT---GTTCTAGCAGAAATTGTAAGGCTTAGGATATTCAAAAATAtcatttattctaattagtaagacatagtttcatggttgactgaacatttttaatcatttacttcatattttttttattgggtgatttt
gi|11 : CATCATTATTTAGTCCCCTACCAGCAAA----GC-----TGGACTGTTAGTTT---CAT-C-TCTGTCTGTCT----ATCAATCTG--TC--TATTTAAAATACAACTTT---TTTTTCTGAACTTTTTTTTTTTTT--TTTACCATG--------TTTTGA--TT-TAGGATGGTAAAATTTGGA---A---------TGT-GATTT
gi|12 : tatc--TT-TAGAAAGCTGTAATTTGGT---ACCAGGGGTATGT-ATTTTGTT----AA--TGTAT-GTTTA-----CAGATCAAGTCT--AGGT--TT--CGTCATGGTTGGATGATT------------TTTATGGAACTCTGTGCGGAATATATTTTTCT--GGA-TTTTTAT-----CTATTA-------TG--------T-----G---
gi|13 : cagTC----TG--TCCATCCGT----CAAAACTTA---GTGGTCCAGA-TTTG-----TTTT--TTCATCATG--------CTTTGA--AA-TAGGAACCTGAAATATGGTTTGACT-------TGT-GATTTACT----AA--TGTAT-GTTTAAAGATCAAGG-----TG--AAGT--TT--TGTCATAGTTGA
gi|14 : TAAAATTCAGG---A---------TGT-G-TTTACC----AG--TGCAT-GCTTA-----TGTATCAAGTTT--AAGT--TT--CGCCATAGTTGAGTGATTT---TGACAAGATATAAGATACTTTATATCAAA-ATAGTTTTCC--GAACTGTTTTT-----C
gi|15 : t-C-TCCGTCCGTCC----GTC----AGCTTT--TCTAT----CATAACGCT---GTTTTCTGGACTTAT-----TTT------ATTATA--------CTCTGA--TG-TAGGAGGTTGGAATTTGGT---A---------CATGGGTTTACT----AA--a
gi|17 : aTAAAATTTGGA---A---------TGT-GATTTGCT----AA--
gi|2 : CATCTTT-CTTATTCTCCAACCAGCAGAAGA-GAA--G-GAAACTACTAGTTCATACTC-CATCTGTCTGTCT----GTC----TG--CCCTTCTGT----TCCAACTTA---ATATTCTGTACCTTT-----TTTTATTTTATCATC--------CTTTGA--TT-TAGGAGCCTGAAATTTGAC---A---------TGT-GGTTTACT----AAATTGTATTGCATA-----C---------TT--AAGT--TT--CGTTGCAGTTGAATGAATT---CTATAAG-TTTATGGGACTTGGTGCAGAATATAGTTTTCC--AGACTTTTTTT-----CCACTA-------TA--------T-----G---AGATATC--TGAAA-TTT--GATGT---GTGGTTTCCCAATGAGTAGATACAAACGAAATTTCAC--ATGTTATGGAGGAGTTATGGTCCT--------TT---AGG----GGATATCCAGAAATAcaatttaacagatcaagttcaaagttttgtc
gi|3 : atAGTTT---CCA-C-TTTGTCAGTTC----ATC----TG--TC--ACTAT-----------TA---GTTTTTCAGACTTTT----------------------------CTCTGAA-CT-T-------TGAAATTTGGT---T---------TGT-GATTTTCT----AA-----AT-GTTTG-----T---------TT--A--------------CAG-------ATTT---TTACAAGATTTATGGGACTCTGCGCCAAATGTAGTTTTCT--GGAA-TTTTCT-----CTACTACTTTTATTT--------T-----A---GGA-AAC--TGAAA-TTC--AATAT---ATGGTa
gi|4 : tgaactattttttgtactttagtgttataaatcctttgttggggaggtgaagaaATCTTCA-TCAT-ACTCTACTGGT-GAAGACGCATTG-GGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTAT-----A-----A---------TT--AAACAGCT--CATTGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCACCA-------TG-------------------AA-GTC--TAAAAATTT--GAT-----GTTATTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATcaagtttgagactttcatttgaacaaatatttgtaagattttgtttcatgcttgaccgaacttgaattcctctactctgtttagttttccgtattttcttcatggtacatttt
gi|5 : tatTTT---GTTTGGTGGATTTTT-----TTTT--TTAATCATGTGCTGATGCTTTGAGTTTATAGGAAACTGAAATTTTGT---A---------TCT-GATTTGCTTTTAAA--CGTAT-GTTTA-------------------A-------------GCATTTATTTTTCTT---TTACAAGAGAAATGGGATTTTATGCTAAATGTAGTTTTTC--AGA------CT-----CCACTA-------Tt
gi|6 : gtctattaattCTCTACTGGT-GAAGACGCA--TTGGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTC-----TTTC--TCTA----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTAT-----A-----A---------TT--AAACAGCT--CATCGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGT--AG-CCTTTTCT-----CCAC----------A--------T-----G---A-A-GTC--TAAAAATTT--G-TAT---TTA-TTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATtctctaacttaggaaatgaaaattcaatagacctagagtaaatttattttcatcatgtatttcaacgaaaataggacttagtttcatggttgacttctttaatgtttgtctagttcat
gi|7 : taA--G-GGGAATATTTGTTT---GCA-C-TCCGCCCGTCC----ATC----AG--TCCGTCGGT----CTTAAATTA---ATTTTACGGACT-----------T--TTT---------------------------------TGAAATTTGGT---T---------TGT-ACTTTACT----AA--TGTAT-GTTTA-----C--------------AGT--TT--CGCCGCAGTAGTGTGACTTGAATAATGAGAATTATTAAACTTTATGTCGAGCATAGTTTGCCAAGTGTTTTTTTTTTTTCCCACCA-------TGCTTT----T-----G----GA-ATC--CGATG-TGT--GAAAT---GTAGTTACCTAGCGAGTACACACGGAACGAt
gi|8 : aA--G-GGTACTAC-AATTT---CCCTC-TCTGTCTGTTTTTAAGTT----CG--TC--T--GC----CACAAATTA---GTTTTCCGGACTTTT-----TTTC--GC-AT--TG--------TTTTGA--TT-TAGGAAGTTAAAATTTGGC---G---------TGT-GTTCAGCT----CA--TGCAT-GTTGA-----A---------TTTCAAAT--TC--CATCACAGTTGACTTATTT---TCACAAGATTTA-AGGACTTTGTACCCAATGTAG-TTTCC--GGACTTTT
gi|9 : aaGAAATTTGGA---A---------TGT-GATTTGCT----AA--TGCAT-GTATA-----CAAATCAAG-TTA-AAGT--CT--CGTCACAGTTGACTG---T---TTAAAAGATATATGAAATTCTGTGCCAGATGTAATTTTCA--GGA-GTTTCCT-----CCACTA-------TG--------TTTTAAGTTTAGA-AAG--TGAAA-TTT----TAT---GT-------TA------AGATAAA-----AGTCTCATTTTTGTCACAGTTGACCTAT
blockSeqs : C T A A C TTG ATA CCA TTTAA AATCT CT TATTTAAAATA C T TTTTTTAATCATGTGCTGATGC GT A A TGG ACCAGGGGTA G A TTTA AT T CAGATCAAGTCTAGGTTT A A GAA G AA ACC T TTTTC T TGTTTTAAGTTTAG T . A AAGA . TG TC AT G TCA T C G TT .
blockSeqs : A . . A C TT . CTC T T . CATCCGTCA C A TTTTTTTTTTTTACCATGT A . A AGC TTGACT . T . . . AAGATCAAGGTGAAGTTT A A . A . ACT T . T CTTTTATTTTAGG . . A GA . GG TC AT G CGA T T
blockSeqs : . A . G . TC C A . CTTCTGTTC C T TTTTATTTTATCATCC . . A ACC A . A . . . TGTATCAAGTTTAAGTTT G A . A . ACT T . T TGCTTTTGG . . . AA . GG AT AC A CCA T T
blockSeqs : G . AC T T . CGTCGGTCT C A TTTTTTCATCATGC . . A GGT A . G . . . CAAATCAAGTTAAAGTCT A A . A . GTT T . C TATGAG . . . GA . TA AT AC A CCA C T
blockSeqs : G . AC C T . TCTATCA A A TTTCGCATTGT . . A GCC A . A . . . ATTAAACAGCT T A . G . ACT T . T ATGA . . . GA . AG AC GC G ACG . C
blockSeqs : . . C T T . ACTAT A T TTTATTATAC . . G AAC A . G . . . ATTAAACAGCT T T . A . AT T . C TGT . . . G . A . . . .
blockSeqs : . C T T . TGTTG A T TTTCTCTAG . . A AGT A . A . . . ATTTCAAATTC T A . G . AA T . T TGA . . . . . .
blockSeqs : C A . TGTTG A T TTTCTCTAG . . G . T . A . . . CTTAAGTTT G A . G . CC C . .
blockSeqs : C . TGCCA . A TTTT . . A . A . A . . . CAGTTT C A . A . CC . . .
blockSeqs : A C . . . . A . A . . . TTTA C . . A . AG . .
blockSeqs : . . . . A . C . . . A . . . . . A
blockSeqs : T . T . .
blockSeqs : G . A . .
blockSeqs : A . .
blockSeqCons : N*** TTTCTTTATCATGC*************** CATCAAGTAAGTTT*************** ACC TGTTGG*********************** ** ***
originalCons : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTT-----TTTT--TTTATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTAT-GTTTA-----C---------TT--AAGT--TT--CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACTTTTTCT-----CCACTA-------TG--------T-----G---AGA-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
finalCons : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTTTTTCTTTATCATGC---------------TTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTAT-GTTTACATCAAGTAAGTTT---------------CGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCC--GGACCTTTTCT-----CCACTATGTTGG-----------------------A-ATC--TGAAA-TTT--GATAT---GTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGAAATTTCTGACAAAAATTGTAAAACTTTTCAATGGTTGACTGAATGAATTCTTGTGCTTTGTCTAGTTTTCTGTAATTTTCGTTTTTAT
Alignments
lowQualScore : 11 1 1111 1111 11111 3333333333333 66666666666666666666666666 111 1111111111111 555555555555555555555555 111 1111111 666666666666666666 1 11111111 3333333333333 2222
lowQualScore : 99 7 5 3 8 0000 888 0000 00000 88888 55 3333333333333 2 7777 77777777777777777777777777 0 77 3 1 444 4444444444444 2 1 6666 66 11 000000000000000000000000 1 1 3 2 555 33 44 0 0 0 666 1111111 1 8888 4 000000000000000000 5 0 66 0 0 00000000 77 33 22 1 333 5 2 0 2 8888888888888 4444
lowQualScore : .. . . . . .... ... .... ..... ..... .. ............. . .... .......................... . .. . . ... ............. . . .... .. .. ........................ . . . . ... .. .. . . . ... ....... . .... . .................. . . .. . . ........ .. .. .. . ... . . . . ............. ....
lowQualScore : 33 3 5 2 8 7777 888 3333 11111 88888 55 9999999999999 5 4444 44444444444444444444444444 3 99 3 8 777 5555555555555 7 3 1111 88 77 888888888888888888888888 4 2 3 4 888 00 44 2 8 1 222 8888888 3 5555 0 333333333333333333 0 8 99 4 0 22222222 99 44 77 7 999 7 2 8 5 0000000000000 0000
consensus : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTTTTTC--TCT-----ATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTATGTTT--A--C--A--TCAA-GT---AAGTTTCGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCCGGACCTTTTCT-------CCACTA----T-G--------TT-------GGA-ATC--TGAAA-TTT--GAT---ATGTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
Reference ( family-1831 ) : NNCATCTTTACTTATTCCCCTACCGGCAGAAGACGCA--G-GGGACTACTAGTTT---CCC-C-TCTGTCCGTCC----GTC----TG--TC--TCTGT----CGCAACTTN---GTTTTCCGGACTTTTTTTC--TTT-----ATCATG--------CTTTGA--TT-TAGGAAGCTGAAATTTGGT---A---------TGT-GATTTGCT----AA--TGTATGTTT--A--C--A--TCAA-GT---AAGTTTCGTCGCAGTTGANTGATTT---TTACGAGATTTATGGGACTTTGTGCCGAATATAGTTTTCCGGACCTTTTCT-------CCACTA----T-G--------TT-------GGA-ATC--TGAAA-TTT--GAT---ATGTGGTTNCCTAACGAGTAGATACAGACCGAGTTTCACTTTTGTTACGGTTGACTTATGGTCCTAGCAGAAATTGTAAGGCTTAGGATATCCAGAAATA
gi|1 : --G-GGGACAACTAGTTT---CCT-C-TCTGTCTGTTT----GTC----AA--TC--TTT------TACAACTTAATAGTTTTTCAGACTTTTTAA-----------ACCATG--------CTTTAA--TT-ATGGTAGCTGAAATTGGGT---A---------TGC-AATTTGCT----AC--TGTATGTTT--A--C--A---AAA-AT---CTATTT--TTATAGTCCACTGGTTT---TTCCAAGATATATGGGAC-TCAAGCTGAATGTATTTTTCCTGA-CTTTTCT-------CCACTA----TGG--------TTTATTGTAGGA-AACAAGAAAA-TTT--AATATCATGTGGTTTTCTAGTGATTACATAAAGATTGAGTTTGACTTT------GGTTGACTT
gi|10 : ataactcaatttttgtctttattctaatggtaaaatcaaagTCGCAGTTGAATG-TAT---TTACGAGTCTTATGGGAGGTTGTGGTGAGTATAGTTTTCTAGACCTT--CT-------TCA-------T-G--------T------------ATT--TGA---TTTAAGAT---ATGTTGTTTCCCAATGAGTCAACACAGATCAAGTACAACTTTTGT-ACGTTTGACTT---GTTCTAGCAGAAATTGTAAGGCTTAGGATATTCAAAAATAtcatttattctaattagtaagacatagtttcatggttgactgaacatttttaatcatttacttcatattttttttattgggtgatttt
gi|11 : CATCATTATTTAGTCCCCTACCAGCAAA----GC-----TGGACTGTTAGTTT---CAT-C-TCTGTCTGTCT----ATCAATCTG--TC--TATTTAAAATACAACTTT---TTTTTCTGAACTTTTTTTT--TTTTTTTTACCATG--------TTTTGA--TT-TAGGATGGTAAAATTTGGA---A---------TGT-GATTT
gi|12 : tatc--TT-TAGAAAGCTGTAATTTGGT---ACCAGGGGTATGT-ATTTTGTT----AA--TGTATGTTT--A--C--AGATCAA-GTCT-AGGTTTCGTCATGGTTGGATGATTT---TTA---------TGGAACTCTGTGCGGAATATATTTTTCTGGA-TTTTTAT-------CTATTA----T-G--------T
gi|13 : cagTC----TG--TCCATCCGT----CAAAACTTA---GTGGTCCAGATTTGTTTT---TTC-----ATCATG--------CTTTGA--AA-TAGGAACCTGAAATATGGTTTGACT-------TGT-GATTTACT----AA--TGTATGTTTAAA--G--A--TCAAGGTG--AAGTTTTGTCATAGTTGAg
gi|14 : TAAAATTCAGG---A---------TGT-G-TTTACC----AG--TGCATGCTT--A--TGTA--TCAA-GTTT-AAGTTTCGCCATAGTTGAGTGATTT---TGACAAGATATAAGATACTTTATATCAAA-ATAGTTTTCCGAACTGTTTTT-------C
gi|15 : t-C-TCCGTCCGTCC----GTC----AGCTTT--TCTAT----CATAACGCT---GTTTTCTGGACTTATTTT-----------ATTATA--------CTCTGA--TG-TAGGAGGTTGGAATTTGGT---A---------CATGGGTTTACT----AA--a
gi|17 : aTAAAATTTGGA---A---------TGT-GATTTGCT----AA--CA-AT-TTA--A--CAGA--TCAA-GTTCAAAGTTTTGTC
gi|2 : CATCTTT-CTTATTCTCCAACCAGCAGAAGA-GAA--G-GAAACTACTAGTTCATACTC-CATCTGTCTGTCT----GTC----TG--CCCTTCTGT----TCCAACTTA---ATATTCTGTACCTTTTTTTATTTT-----ATCATC--------CTTTGA--TT-TAGGAGCCTGAAATTTGAC---A---------TGT-GGTTTACT----AAATTGTAT---T--G--C--A--T-AC-TT---AAGTTTCGTTGCAGTTGAATGAATT---CTATAAG-TTTATGGGACTTGGTGCAGAATATAGTTTTCCAGACTTTTTTT-------CCACTA----T-A--------TG-------AGATATC--TGAAA-TTT--GAT---GTGTGGTTTCCCAATGAGTAGATACAAACGAAATTTCAC--ATGTTATGGAGGAGTTATGGTCCT--------TT---AGG----GGATATCCAGAAATA
gi|3 : atAGTTT---CCA-C-TTTGTCAGTTC----ATC----TG--TC--ACTAT-----------TA---GTTTTTCAGACTTTT----------------------------CTCTGAA-CT-T-------TGAAATTTGGT---T---------TGT-GATTTTCT----AAA-TGTTTGTTT--A--C--A--------------------------------GATTT---TTACAAGATTTATGGGACTCTGCGCCAAATGTAGTTTTCTGGA-ATTTTCT-------CTACTACTTTT-A--------TTTTA----GGA-AAC--TGAAA-TTC--AAT---ATATGGTa
gi|4 : tgaactattttttgtactttagtgttataaatcctttgttggggaggtgaagaaATCTTCA-TCAT-ACTCTACTGGT-GAAGACGCATTG-GGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTCTTTC--TCT-----A----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTATA-----------A--TTAA-AC---AG--CTCATTGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGTAG-CCTTTTCT-------CCACCA----T-G------------------AA-GTC--TAAAAATTT--GAT-----GTTATTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATcaagtttgagactttcatttgaacaaatatttgtaagattttgtttcatgcttgaccgaacttgaattcctctactctgtttagttttccgtattttcttcatggtacatttt
gi|5 : tatTTT---GTTTGGTGGATTTTTTTTT--TTA-----ATCATGTGCTGATGCTTTGAGTTTATAGGAAACTGAAATTTTGT---A---------TCT-GATTTGCTTTTAAA--CGTATGTTT--AAGC--A--TT----T---ATTTTTC----------------TT---TTACAAGAGAAATGGGATTTTATGCTAAATGTAGTTTTTCAGA------CT-------CCACTA----T-t
gi|6 : gtctattaattCTCTACTGGT-GAAGACGCA--TTGGGACTACTAGTTT---CCC---TCTATTCATCT----GTA----TG--TA--T--GT----TGCAAATTT---GTTTTCTGG--TCTCTTTC--TCT-----A----G------------AA--TT-TGGTA---------CTAGT---A---------TGT-TATTTGTT----AA--TGTATA-----------A--TTAA-AC---AG--CTCATCGCAGTTGATTGATTT---TTCTGAGAATCATGGTACTGTGTGCTGATTACAGTTTTGTAG-CCTTTTCT-------CCAC-A----T-G------------------AA-GTC--TAAAAATTT--G-T---ATTTA-TTATCTAACGAATAGATGCAGACCAAGTTTCACTTTTATTATGGTTGACTTATtctctaacttaggaaatgaaaattcaatagacctagagtaaatttattttcatcatgtatttcaacgaaaataggacttagtttcatggttgacttctttaatgtttgtctagttcat
gi|7 : taA--G-GGGAATATTTGTTT---GCA-C-TCCGCCCGTCC----ATC----AG--TCCGTCGGT----CTTAAATTA---ATTTTACGGACT--TTTT--------------------------------------------TGAAATTTGGT---T---------TGT-ACTTTACT----AA--TGTATGTTT--A--C----------------AGTTTCGCCGCAGTAGTGTGACTTGAATAATGAGAATTATTAAACTTTATGTCGAGCATAGTTTGCCAAGTGTTTTTTTTTTTTCCCACCA----T-GCTT-----TT-------GGA-ATC--CGATG-TGT--GAA---ATGTAGTTACCTAGCGAGTACACACGGAACGAt
gi|8 : aA--G-GGTACTAC-AATTT---CCCTC-TCTGTCTGTTTTTAAGTT----CG--TC--T--GC----CACAAATTA---GTTTTCCGGACTTTTTTTC--GC------AT--TG--------TTTTGA--TT-TAGGAAGTTAAAATTTGGC---G---------TGT-GTTCAGCT----CA--TGCATGTTG--A-----A--TT---TC---AAATTCCATCACAGTTGACTTATTT---TCACAAGATTTA-AGGACTTTGTACCCAATGTAG-TTTCCGGACTTTT
gi|9 : aaGAAATTTGGA---A---------TGT-GATTTGCT----AA--TGCATGTAT--A--CAAA--TCAA-GTTA-AAGTCTCGTCACAGTTGACTG---T---TTAAAAGATATATGAAATTCTGTGCCAGATGTAATTTTCAGGA-GTTTCCT-------CCACTA----T-GTTTTAAGTTT-------AGA-AAG--TGAAA-TTT----T---ATGT-------TA------AGATAAA-----AGTCTCATTTTTGTCACAGTTGACCTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTTGAAATTTCTGACAAAAATTGTAAAACTTTTCAATGGTTGACTGAATGAATTCTTGTGCTTTGTCTAGTTTTCTGTAATTTTCGTTTTTAT