lowQualScore : 1111111111 1111111111111111 111111111111 111111111111111111111111111
lowQualScore : 555 1 555555555555 11 444444444444 22222222 11 111 22 11111 11 33333 1111 222222222 1 11 11 2222 22 1 1 77777777777777777777777777777777777777 111 2222 1 444 22 11 333 11111 111 11 33 1 1 11 3333 1 222 1 1 33333 33333 1 3333 1 11 11 11 1 2 5555555 1 1111 33 22 2 2 7777777777777777 2 444444444 2 55 22 11 7777777777777777777777777777777 2 2 444 2 2 55 7777777777 4 0000000000000000 2 2 77777 3333333 444444444 1 2 1 5555555 44 11 2 22 22 2 444444 1 1 1 22 2 4 4 4 6666 22 1 4 4 444444 000000000000 4 33 2 4 33333 44 1 2 2 222 2 44444 2 2 44 4 666 55 44444 1 222 1 7777777777777777 4 4 1 8888 4 55 77777 4 6666 444 4 1 55 7777777777777 4 4 444 1 999999 5555555 4 1 55 11 44444444444 4 666 77777777 4 1 33 99999999999999 77777 4 777 9999999999999999999999 55555 4 55555555 33 55 4 4 77777777 444 44444444 444444 7777777 1 55 999999 4 22 1 55555 4 1 33 4 4 66666666 22 4 777 222 55 1 222 1 4 000000000000000000000000000 22 1
lowQualScore : 555 0 1 0 444444444444 3 33 8 8 8 8 8 8 777777777777 88888888 8 44 8 8 444 66 33333 8 99 8 66666 8 8 7777 777777777 5 11 77 8 8 5555 8 22 999 33 0 3 0 77777777777777777777777777777777777777 666 2222 0 111 88 11 8 222 88888 444 11 3 11 3 3 3 77 7 0000 7 6 333 7 5 7 3 77777 33333 3 5555 2 88 88 88 3 6 6666666 7 3 3333 4 55 6 77 0 0 5555555555555555 0 111111111 0 55 77 77 9999999999999999999999999999999 4 0 2 0 4 777 0 0 55 5555555555 6 0 6 9999999999999999 0 0 6 6 66666 6 4444444 888888888 5 2 3 5 4444444 33 88 0 77 55 0 444444 2 7 5 5 77 0 0 0 0 1111 11 5 6 0 6 0 444444 111111111111 0 00 8 0 66666 77 5 3 0 111 0 00000 0 6 0 4 66 0 111 55 22222 5 777 7 9999999999999999 0 0 6 5 5555 6 0 55 6 77777 0 2222 666 0 5 55 4444444444444 0 0 777 7 6 777777 7777777 0 7 55 22 6 44444444444 0 111 6 6 44444444 0 5 00 88888888888888 66666 0 000 5555555555555555555555 11111 0 22222222 22 55 0 6 6 0 33333333 888 77777777 222222 3333333 5 55 222222 6 0 11 7 11111 0 6 5 22 0 0 55555555 33 6 0 6 6 000 555 6 6 55 5 555 5 0 111111111111111111111111111 6 11 5
lowQualScore : ... . . . ............ . .. . . . . . . ............ ........ . .. . . ... .. ..... . .. . ..... . . .... ......... . .. .. . . .... . .. ... .. . . . ...................................... ... .... . ... .. .. . ... ..... ... .. . .. . . . .. . .... . . ... . . . . ..... ..... . .... . .. .. .. . . ....... . . .... . .. . .. . . ................ . ......... . .. .. .. ............................... . . . . . ... . . .. .......... . . . ................ . . . . ..... . ....... ......... . . . . ....... .. .. . .. .. . ...... . . . . .. . . . . .... .. . . . . . ...... ............ . .. . . ..... .. . . . ... . ..... . . . . .. . ... .. ..... . ... . ................ . . . . .... . . .. . ..... . .... ... . . .. ............. . . ... . . ...... ....... . . .. .. . ........... . ... . . ........ . . .. .............. ..... . ... ...................... ..... . ........ .. .. . . . . ........ ... ........ ...... ....... . .. ...... . . .. . ..... . . . .. . . ........ .. . . . . ... ... . . .. . ... . . ........................... . .. .
lowQualScore : 444 8 4 6 888888888888 2 66 0 0 0 0 0 0 888888888888 22222222 0 44 0 0 000 44 66666 0 00 0 00000 0 0 0000 000000000 0 00 66 0 0 0000 0 00 888 55 0 2 0 00000000000000000000000000000000000000 222 0000 0 888 00 00 0 222 88888 000 00 2 00 3 3 2 55 3 7777 3 0 333 3 0 3 3 00000 33333 3 7777 3 33 33 33 3 7 0000000 3 3 5555 0 00 0 55 0 0 0000000000000000 0 555555555 0 00 55 55 0000000000000000000000000000000 0 0 5 0 0 555 0 0 00 0000000000 0 0 0 0000000000000000 0 0 0 0 00000 0 5555555 555555555 5 5 0 0 5555555 00 00 0 55 55 0 000000 5 0 5 5 55 0 0 0 0 0000 00 0 0 0 0 0 000000 000000000000 0 00 5 0 55555 55 5 0 0 000 0 00000 0 0 0 0 00 0 000 00 00000 0 000 0 0000000000000000 0 0 0 0 0000 0 0 00 0 00000 0 0000 000 0 0 00 0000000000000 0 0 000 0 0 000000 0000000 0 0 00 00 0 00000000000 0 000 0 0 00000000 0 0 00 00000000000000 00000 0 000 0000000000000000000000 00000 0 00000000 00 00 0 0 0 0 00000000 000 00000000 000000 0000000 0 00 000000 0 0 00 0 00000 0 0 0 00 0 0 00000000 00 0 0 0 0 000 000 0 0 00 0 000 0 0 000000000000000000000000000 0 00 0
consensus : CTGTTC--AAATATATTTTTAACATGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGTTA-----TAAA---ACGTTT----CT--AG-GTAAGGC-A-TTT---CTTA-GCTT--AGGA-ATAA-AGA-TTT----ACA-A-TG----AAAAAGAAAATGAA---T--T-CATCT--TCAA-TC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATT-CAAATGANGT-GGAA-TTAT-ATGC---TA------CCACT-TTCTATTGCCAAGCT-TATGA-TGCAC-CTC--AATCTAATTTT-ACTAAGAGAGGATCTCTT-CAGA--TCTTTTTCT---GAG--TAAATCAACATA-TG-GACTTC-TTTTACTTGTGTATAATTTTTTT---ATAAAA-TTCAAGT---TTTTTT-AAACCA-AAA-A-TTTTTG-----ATGA-TTGCC---TCCTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAA-TT----GAATTTTTAT-ATTTTGTAA-TGNTNTGGAAAATCCAAAGGATTATCTTGGAATAAGGAAAT--ATTTTTCCCATGNAGTCCCAAGCCCAATTGTCGGTCACTTGTGGATTGATAAA--GTTTAGAAAAGCNAAGAATC-AGACGTTATTAAGATGA-ATTCGCAATTANCTGGATANTCGAGAAATGNAAAATTTTGGACACAAAAGTGGCAGTCTATTACTTG----------CTGTTAGACA-CCAGCATTGGATGTTTTTG-CAGTTGCAGGGACCGGAGAGATTTCTTTTAATAAATTTGAAGTGAAA---TTTTTCTATGTTTNNGAAACATCTTTTTGNATTGAGGAGATCNACTTCCCCATNATNCGCACTACAATA-AAGAAGAACCGGTAGTACCAATGTAACATCAAAAGGTTTTTTCTAAAAGTTTACACTGG-ATATATCNAATACCAATAATTCTTTTTCATTTGTAAAACGATGCGTTTTC-TGGCTTTTTCTCAATAAGGCAACAGCTGTTACTAAGTTACACTTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTA-TT-TTGTTCA-CAATTTGT-ATTATATTGCCATTAATAGTAA-ATTCATTCCATCTTGAGGTTTGGCCATTTTGAGTTAGAATATCAAAACTTTTGGATTTATTCTACATCGACCTTGAGCAGTTTCCAGTCTTGAACAACANTA-TTCTGGAGAATATC--AAGGCT--TTTGTAAACGCACTTTGCTTTCAGAAAGATTACAATATCATCA-GCA-GTATAATCAGACAGTTTACGATGAACATTGTTTACTT-GTACAGGGATCACA----TTCTTCCAT-TTTCA--TCTATTGACA--TA-CCATCCAATAAAT-ATATTGAAGAGTATCGGGCTTAAAAACATCCCCTTGTTTTGAC---CCACATTCA-GAATTGAATATCATCACTTACAACCATATCAAAATTTTTATTCTACTTGTTGTTCTTTTTACTATAC-ATGGGAAAAATAGAATGATTAAACAGTTTTGTTGAGAAATATTAGATGTCAAAGGAGATTTATAAA-TAAACCCAATCTCCAGACAGTG--TCAATGCTTTCCTAAGATCAAGTGAAGCCGGCAT-TATCTTTTTTGTTTTTTGTAATGGCAATTAT-ATGTTCGTATACTGAGAATAAGTGGTCTTTGA-TGTCCT-CAGTTTTGTCTTTGAAATCCGAATTTTGGTTTT---CAACTTATTAAT-GACGATAGA-GTTTACAA-TTCAAGTAGTCTAGTTGGGGAATTATTCCTATTGAAAAGTTTTTCCTAGGTTGATGGTAA-TTGACTGATACTCTGTTGTTGTTTGAGGCGTTCAAGCCTATT-ACCA-GATTTATTAACAAAGCAAGTACTAAAATTAACTTT--AT--TCCAACTTTTTGGGAATCACCAGGAATTGAGTTTAA-GTGGAACAATTTTTC-AGAGGTTTCAACATATGCATATCCCCCATTTTTCAGCATTTCATT--GATATACATATCCATGGAAGATCTTTCCCATTTTT---CGAACTTTAAGCAGCCTTTATTTGATAATTGGTAATG-TCTGGTTCAAGGAAAATGATTTATGTTGCAGCTGTTTCTGTTCAAAAACAT
Reference ( gi|1 ) : CTGTTGTAAAATATATTTTTAAAATGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGTTA-----TAAC---ACATTT----CT--AG-GTAAGGC-A-TTT---CTTAAGCTT--AGGA-ATA--GGA-TT-----ACA-A-TG----AAAAAGGAAATGAA---T--T-CAGCT--TCAG-TC-ACA-CCA----GTATT-GC--ACAT-TTTGCAA-CATCTTTG-ATT-CACCTGAAGT-GGA--TTAT-AT-C---TA------CCACT-TTCTATTGC-AA-CT-TATGA-AGCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTT-CAGA--T-TTTTTCT---GAG--TAAATCAACATAATG-GACTTC-TTTTACTTGTGGATAATTTTTTT---ATAAAAATTCAAGT---TTTTTTGAAACCA-AAA-A-TGTTTG-----ATGA-TTGCT---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTG-TGAA-T-----GAATTTTTAT-ATTTTGTAA-TGGTATG-AAAATCCGA--GATTATC-TAGAAT-AGAAAATAAATTTT---CAT--AGT-CCAAGC---ATTGTGGGTCAC-TGTGGATTGATAAAATGTTTA--AAAGCCAAGAATCGGGACGTCATTAAGATGAAATTC-CAA-TATTT-AATACTCGAG-AATGAAATTTTTTGGAC-CAAA-GTGGCAGTCT--TACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGT-GCA----CTCGAG-GATTTCTTT-AATAAATTTGAGGCGAAAAATTTTTCCTATGTT-GAAAAACATCTGTT-GGAT-GAGAAGATCCACCTCCCCATAATTTCAACTACAATACAAGAAGAACTGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGGTATATATCCATTACCAATAATTCTTTTTCATTT--AAAAC-ATGC-TTTTCGTGGCTTTTTC-CAATAAG-CA-CAGCTGTTGATAAGTTAAACCTTCCATTGCATT-CAACATAA-ACCTAA-ATAA-CAGTAATTATTGGTAGGCAATTTGTTATTATATTCGCATTAATTGTAACATTCATTCC--CT-GAGGTT--GCCATTCTGAGTTA-AATATCAAAACTTTTGGATTTAT-CTACATTGACCT---GCAGTTTCCAGT-TTGAGC-ATATTGCTTCTG-AGAATATTCAAAGGCTGTTTTGTAAAC-CATGTTTCTTTAGAAAAGATTACAATTTC-TCAAGCATACATAA-CAGACAGTTTAC-ATGAACATTGTTTACTTTGTACAAGGATCCCAAATTTTTTTCCATGTTTCAAGTCCATTGACAATTAACCATC-AATAAATTAT-TTGAAGAGT-TGGGGCTTAAAA-CATGCCCTT--TTTGACACGCCAC-TTCAAGAATTGAATA-CATCACTTA-AACCATCAGAAAAATTTTATTCTACTCGTTGCC----TTACTATACCATGG--AAAATAGAAT-ATAAAACAGTTTT--TGGAAAATATCAGAT-TCAA-GGAG-TTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAATGAGGCCG-CATATA-CTTTTTTGTTTTT-GTACTGTGAATTATTGTGTTGATA-A--GAGAATAAGTGGTCT--GAGTGTCCTACAGTTT---CTTTGAAA-CCAAGTT--GGTTTTTTTCA-CTTATTAATTGAC-ATAGATGTTTACAAATTCTATAAGTCTAGTATGGGA--TATTC-TATTGAAAAGTTTTCCTTAGGTTGA-GGTAAATTGCAT-ATACTCT-TAGTTGTTT-AGGGGT-CAAGCCTATTGACCAAGATTTA---ATACAGCAATTACTAAA--TAACTTTCAATAGTCCAACTTCTTGGGAAT-ACCCAGAATTGAGTATAAAGTG-AACAATTTTTCCAAAGCTTTCAACATTGGCATATCCCCCA-TTTTCA-CATTTCATTTGAATAT-CATAATCATGGAGGA-CTCTTCCATTTTTTCACGAACATAAGGCAGTCTT--TTTCATTAATGGTCATGTTCTGGTTCA--GGAAATG--TTA-GTTG-AGTT-TATCCGTTTCAAACCAT
gi|3 : CTGTTC--AAATATATTTTAACAATGTA---A-------CTTTCATGTGTTCA-A--CT-AATAT-TTCTCTG-TGTTTATGTTA-----TAA----ACATTT----TT--AA-GTAGGGCCA-TTT---CTTA-GCTT--AG-A-ATAA-GGA-AT-----ACA-A-TG----AAAAAAGGAATGAAATTT--T-CATCT--TCA--TC-ACAACCA----GTATT-GC--ACAT-ATTGCAA-CATCTTTG-ATT-CAAATGAGGT-GGAATTTATTAT-C---TA------CCACT-T-CTATTGCCAA-CTATATGA--GCAC--TC--AATCTAATTTTTGCTAAGAGAGGATCTCTCGCAT---T-TTTTTCT---GAG--TAA-TCAACATA-TG-GACTTC-TTT-ACTTGTGTATA--TTTTTT---ATAAAA-TTCAAGT---TTT-TTGAAACCA-AAA-ATTTTTTG-----ATGA-TTGC----TCTTGAGTGCA--CTGGTCAAAT--TTTCTTTGTTTTATG--TTTGGTAATAAGGTGTTGAA-TTG---GAATTTTTATAATTTTGTAA-T-GTAT--AAAATCCAA--GATTATCTTAGAATAAGAAAAT--ATTTTTCCCATAAAGTCCCAAGCCCAATTGT-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-AGACGTTATT-AGATG--ATTCGCAATTAATT-GATAATCGAGAAATGAA---TTTTGGAC-CAAA-GTG
gi|4 : tacaaatacaaatatttattggcacacacaaacacaattacaaacattgcaaaaggcccattgaacatcatttggcagtgttaatttacatttttttaatgtaatagcatgttgaatttctatattcacaacacgtcctttgataaatttcctgtaatttttaaaacttttgtgtaacatcaCTGTTC--AAATATATTTTTAACATGTT---A-------CTTTCAT--GT-CAGAGACTGAATATATTCTCTGCTGTT-ATGTTA-----TAA----ACATTTTTCTCT--AGTGTA-GGC-ACTTT---CTTA-GCTA--TGTA-ATA--GGA-TTT----ACACA-TG----AAAAAGGAAATGAA---T--TTCATCT--TCAA-TC-ACA-CCA----GTATTTGC--ACATATTTGCAAACATCTTTGCATTTCAATAGAAGT-GGAA-TTAT-ATGC---TGAGCTCTCCACTCTTCTATTGCCAA-CT-TATGATAGCAC--TC--AATCTAATTTT-GCTAAGAGAGGATCTC-T-CAGA--T-TTTTTTTCTGGAG--TAAATCAACAT-ATGCGACTTCTTTTTACTTGTGTATA
gi|6 : atacaaatttactaaattatttattgcgtccacaaacacaatacaataatggcaaagaccattatgaacatattttggcaagtcttgtataatttacaatttttttttattttgtacaaatagcattgttgatttctatatcaaaacagtctttgcataattcactgtaattttttaagactttgtagtcaaatccaCTGTTC--AAATATATTTTAAACATGTTTGTA-----A-CTTT-----GT-CA-AGACT-ATTAT-TTTTCTG-TGTT-ATGTTAGCCTATAAATAGATGTTT----CTG-AG-GTA-GGC-A-TTT---CTTA-GCTTCTAAGA-ATA--AAA-TTT----ACA-A-TG----AAAAAGAAAAT------T--C-CATCT--TCAA-TC-ACA-CCA----GTATT-ACGAACA---TTACAA-CA----TG-AT----------GT-GGA--AT-T-AT-C----------------------TTGC-AAGTT-TATG--TGCACTCTTGAAATCTAATTTT-ACTGAGAGAGGATCTC-T-CAGATCT-TTTTTCT---GAG--T
gi|8 : ataagatacaaaagttggcgcaaacacaatttaattggcaaaggccctttgaatgtttacattattttttatgcaatttaaatttcatcgaaatttttaaaactttgtatacatcaCTGTT-TAAA-TATATTTTTAGCATGTA---ACTTTCATCTTTCAT-TGT-CA-AGACT-AATAT-TTTTCTG-TGTT-ATTTTA-----T
gi|5 : aattacaaatatacaaatatttattggcacaaacacaattacaataattggcaaaggcccattgaacatcattagacaatgtttacatattttttatgcaatagcaagtatagctgacttctgtattcaaaacagtctttaataaatttcactgtaatttttaaaacttcgtgcatatatatcaTGTTG--AAATATATTTTTCATCTGTA---A-------CTTTTAT-TGT-CC-AGATT-AATAT-TTCTCTG-TGTT-ATGTTA------AAA---ATGTTT----CTA-AG-GT-AGGC-A-TTT---CTT-AGCTT--AGAATATAAGAGA-TTTGCAAACA-A-CGAAAAAAAAAAAAAATGAAT--T--T-CATCC--TCAA-TC-ACA-CCAGTACGTATT-GCAAACAT-TT--CAA-CATCTTTA-ATT-CA-ATGATATAGAA--TTAC-ATACCTATA------CCACT-TTCTACTGC-AAGTT-TATG--TGCA--CTC--AATCTAATTTT-ACTAAGAGAGGATCTC-T-CAGA--TCTTTTTCT---GAGAATAAA
gi|16 : aaaacaaatacaactatttattggcacaaacacaattacaataatttgtaaagacccatgggacatcattaaacaatatacatattttatgtaatcgcatgtccctgactcctgtacttattcaaaacagtctccaataaatttcacagaaatttttgatactttctcaaatctgtatatcaaTTT----CTTAAG-GTAAGGC-A-TTTCTGCTCATTCTT--ACGA-TTA--AGATTT-----ACA-ATTG----GAAAAGAAAATGAT---TTCT-CACCTGCTCAGATCGACA-CAAG---GTGTG-AC--ACAT-T
gi|10 : GCAC--TC--AATCGAATTTT-ACTAAGAGGGGATCTCT--CGGA--TCTTTTTCT---GAA--CGAATCAACATA-TG-GACTTC-TTTTTCTAATGTTTAATTTTTTTTTCAT-AAAATTCAAGG---TTTTTTTAA--CATAAG-G-TTTTTG-----ATAA-TTGCT---TC-TGAGTGCA--CTGATCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT-----GAAATTTTAT-ATTTTGTAA-TG
gi|2 : tatgtTACTTAT--ATAATTTTCT----ATAAAATTTCAAGTCGTTTTTTT--AACCA-AAAGA-T-TTTGGGTGTATGAATTGACGGATCCTGAGTGCAAGTTGGTCAATTTCATTCTTTGTTTTATAGTTTTGGTAA-AAGGGG-TGAA-TTTTTTGAATTT--AT-ATTTTGTAAATGTTTTGGAAAATCCAAAGGATTATC-TGAAAT-AGGAAA---ATTTT---CATGTAGT-CCAAGC---ATT-TCGGTCAT-TGTGGATTGATAAA--GTTTAGAAAAGCAAAGA-------CGT-AT-AAGATGA--TTC-CA--TATCTGAATACTCGAG-AATGTAAAATTTTGGACACAAAAGTGGCAGTCTATTACTTG----------CTGTTAGACA-CCAGCATTGGATGTTTTTG-CAGTTGCAGGGACCGGAGAGATTTCTTTTAATAAATTTGAAGTGAAA-----TTTCTATGTT-TTGAAACATCTTTTTGGATTGAAGAGATCAACTTCCC-ATA-TGTGCACTACAATA--AGAAGA--TGGTAGTACCAATGTAATATCAAAAAGTTTTTTCTAAAAGTTTACACTGG-ATAT-TCAAATACCAATAATTCTTTT-CATTTGTAAAACGATGCGTTTTC-TGGCTTTTTCTCAATAAGGCAACAGCTGTTACTAAGTTACACTTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTA-TT-TTGTTCA-CAATTTGT-ATTATATTGCCATTAAT-GTAA-ATTCATTCCATTT-GAGGTTTGGCC-TTTTGAGTTAGAATATCAAA-CTTTTGGATTTATTCTACATTGACCTTGAG-AGTTTCCAGTCTTGAAC-ACAATA-TTCTGGAGAATATC--AAGGCT--TTTGTAAACGCACTTTGCTTTCAGAAAGATTACAATATCATCA-GCA-GTATAATCAGACAGTTTACGATGAACATTGTTTACTT-GTACAGGGATCACA----TTCTTCCAT-TTTCA--TCTATTGACA--TA-CCATCCAATAAAT-ATATTGAAGAGTATCGGGCTTAAAAACATCCCCTTGTTTTGAC---CCACATTCA-GAATTGAATATCATCACTTACAACCATATCAAAATTTTTATTCTACTTGTTGTTCTTTTTACTATAC-ATGGGAAAAATAGAATGATTAAACAGTTTTGTTGAGAAATATTAGATGTCAAAGGAGATTTATAAA-TAAACCCAATCTCCAGACAGTG--TCAATGCTTTCCTAAGATCAAGTGAAGCCGGCAT-TATCTTTTTTGTTTTTTGTAATGGCAATTAT-ATGTTCGTATACTGAGAATAAGTGGTCTTTGA-TGTCCT-CAGTTTTGTCTTTGAAATCCGAATTTTGGTTTT---CAACTTATTAAT-GACGATAGA-GTTTACAA-TTCAAGTAGTCTAGTTGGGGAATTATTCCTATTGAAAAGTTTTTCCTAGGTTGATGGTAA-TTGACTGATACTCTGTTGTTGTTTGAGGCGTTCAAGCCTATT-ACCA-GATTTATTAACAAAGCAAGTACTAAAATTAACTTT--AT--TCCAACTTTTTGGGAATCACCAGGAATTGAGTTTAA-GTGGAACAATTTTTC-AGAGGTTTCAACATATGCATATCCCCCATTTTTCAGCATTTCATT--GATATACATATCCATGGAAGATCTTTCCCATTTTT---CGAACTTTAAGCAGCCTTTATTTGATAATTGGTAATG-TCTGGTTCAAGGAAAATGATTTATGTTGCAGCTGTTTCTGTTCAAAAACATttg
gi|14 : ttcaGAG-GATTTCTTT-AATAAATTTGAAGTGAAA---TTTTTCTATGTTTGAAA--CATCT-TT-GCA--GAGA-GATCCAC-TCCCCATTATTC--ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAG--TTTTTCTAAAAGTTTACA-TGG-AT-TATCCAATACCAATAATTC-TTTTCATTT--AAAAC-g
gi|15 : ATATTGCCATTAATAGTAA-ATTCATTCC--CTTGAGGTTT-GCCATT-TGAGTTA-AATATCAAAAC-TTTGGATTTAT-TTACATCGACTT---GCAGTTTCCAGT-TTGAACAATAT
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CTATACACATAGCAATAACTATATTTATTTGGCACAACGATACATTAACAATAATTGGCTAAAAGTGCCGCATTGAACATAGCATTTGGCAGTGTTAATTTACATTTTTATGAGTAGATGAGTCATGTTTGATCTTTCTATAATTCAAAACAAGTCTTTGATAAATTCATGTAAATATAATTATAAAGACTTTGTAGTAAATCCACTTGCATGTCAAAATATATTTTTAGTAACATGTAACTTTTCATTATCATACTTTGGTGTGCATGTTACA
Unaligned ( gi|9 ): AATATAAATACAAATATTTATTGGCACAAACACAATTACAATAATTGACAAAGGCCCATTGAACATCATTTGGCAGTGTTTACATATTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAACTTTGTGTATATCACTGTTCAAATATATGTAAATATAACTTCAGAATCATCTTATTTAATAGTATGAATAGTGT
Unaligned ( gi|11 ): CACAAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATATATTTCAAGTGCTGTAATTTTTAAGACTTTGTGTAAATCACTGCAGCCAGTTTTCTGATACTTCTTTAAAATTATTTTCATCTCAATATTGAAGAGTTTC
Unaligned ( gi|12 ): TCTAAATATAAATCGTACAAAAACCAATACAAATATTATTGGCACAACACATAATTCAATAATTGGCAAAGGCCCATTGAACATCATGGCAGTGTTTCATTTGTTTATGTATAACATATTTTCTATATTTCCAAAAGCGAGGTGGCGGTTGATTATAGATGTTTCACTGTAACTAGTTAAAGACTTTGCGAAATGATCACGGTTCAGAATATT
Unaligned ( gi|13 ): AATATACAAATACAAATATTTATTGGCACAAACACAATTACAATAATAATTTAATTGGCAAAAGCCCATTGAACGTCATTTGGCAGTGTTTACATTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAATTTTGATATATCACTGTTCAAATATATTTTTAA
Unaligned ( gi|17 ): TACCACAGCACTAACATTACTTTTTATACAAATACAAATACAATACAAATATTAATTGGCAAAGGCCCATTGAACATCATTAGACAGAGTTTACATATTTTT
Unaligned ( gi|18 ): AAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTATGTAATAGCATGTTGATTTCTAT
Alignments
lowQualScore : 111 111 33333333333 11111 2222 1111 22 111111 111 11 1111 1111 11111111 22222 222 11 4444444444444444 1 1 222 22 22 11 1 1 1 2222 1 1 1111 1 1 111 22222 22222 1 11 11 11 1 3333 1 1 1 2 33 111 11 222 333 11 333 1 11 11 33 1 22222 1 11 222 22222 22 1 333 11 8888888888 2 2 1 2222 2 222 11 33 2 2 1 1 1 222 1 2 33 111 2 1 33 1 1 2 1 1 1 1 1 1 1 2 2 22 2 1 1 3333 22 11 2 333 2 111 2 1 22 22 1 1 2 2 1 1 2 4444 2 22 22222 1 1 2 1 1 11 333 1 2 1 1 2222 2 11 1 11 1 1 1 2 22 1 1 2 1 2 2222 11 2 2 222 1 11 333 1 2 1 2 2 11 1 1 2 1 1 1 1 2 2 222 11 333333 1 2 1 2 1 1 22 1 1 333 11 2 11 11 1 1 1
lowQualScore : 000 1 000 5 66666666666 77 5 77 0 5 5 5 5 44444 0 4444 4444 22 6 99 6 6 6 999999 99 111 3 00 3 4444 6 6 4444 88888888 99 88 6 6 55555 6 888 6 0 8 0 8 11 8 1 0 8 9999999999999999 999 0 3 6 555 11 99 6 22 6 00 6 99 0 0 0 0 0 0 3 0000 0 0 4444 0 3 0 444 55555 44444 0 33 33 33 0 66 3 1111 3 0 0 0 1 3 00 555 44 0 555 777 77 6 6 777 6 5 44 88 00 4 22222 2 44 888 77777 11 44 1 7 7 4 777 88 7777777777 0 0 5 3333 2 3 7 7 333 11 7 22 3 1 3 2 1 2 6 4 555 3 7 7 0 3 00 111 3 3 7 7 1 7 7 00 5 5 0 5 5 5 2 2 5 5 5 5 0 0 3 22 0 6 3 5555 22 44 3 7 7 7 6 0 777 6 3 555 1 0 5 77 77 5 3 2 2 4 5 0 0 5 5 0 3 2222 0 77 99999 5 5 0 5 2 5 2 88 555 5 0 5 5 999 4 4444 0 88 5 4 88 5 5 5 0 77 5 5 0 5 3 55 0 2 4444 88 0 0 111 5 88 555 5 0 5 0 0 4 66 66 88 5 5 0 55 5 5 4 5 5 3 0 0 111 3 2 88 777777 5 3 0 4 5 0 2 77 5 5 77 5 4 5 555 4 4 88 2 4 4 3 0 88 88 5 5 5 4 3 3
lowQualScore : ... . ... . ........... .. . .. . . . . . ..... . .... .... .. . .. . . . ...... .. ... . .. . .... . . .... ........ .. .. . . ..... . ... . . . . . .. . . . . ................ ... . . . ... .. .. . .. . .. . .. . . . . . . . .... . . .... . . . ... ..... ..... . .. .. .. . .. . .... . . . . . . .. ... .. . ... ... .. . . ... . . .. .. .. . ..... . .. ... ..... .. .. . . . . ... .. .......... . . . .... . . . . ... .. . .. . . . . . . . . ... . . . . . .. ... . . . . . . . .. . . . . . . . . . . . . . . . .. . . . .... .. .. . . . . . . ... . . ... . . . .. .. . . . . . . . . . . . . .... . .. ..... . . . . . . . .. ... . . . . ... . .... . .. . . .. . . . . .. . . . . . .. . . .... .. . . ... . .. ... . . . . . . .. .. .. . . . .. . . . . . . . . ... . . .. ...... . . . . . . . .. . . .. . . . ... . . .. . . . . . .. .. . . . . . .
lowQualScore : 999 7 000 7 44444444444 11 7 11 7 7 7 7 7 33333 1 6666 2222 55 7 00 7 7 7 222222 22 000 5 88 5 2222 7 7 2222 77777777 22 33 7 7 00000 7 000 7 8 0 8 0 00 0 0 8 0 4444444444444444 444 0 2 7 777 77 22 7 88 7 33 7 22 8 0 0 0 8 6 2 8888 0 0 8888 0 2 0 888 00000 22222 5 88 88 88 0 55 2 2222 2 0 0 8 0 3 33 333 77 7 777 000 77 7 7 000 7 0 00 33 33 0 00000 3 77 000 00000 77 00 0 3 3 0 333 55 5555555555 0 0 5 0000 5 7 3 3 333 33 3 77 7 0 7 0 0 3 7 0 000 3 3 3 7 3 33 333 3 3 3 3 0 3 3 33 0 0 0 5 0 5 5 5 5 0 0 5 0 0 0 55 0 0 3 7777 33 77 3 3 3 3 7 7 333 7 3 333 0 0 0 55 55 0 0 5 5 0 5 0 0 5 0 0 0 5555 0 55 55555 0 5 0 5 5 5 5 00 000 5 0 5 0 555 0 0000 0 00 0 0 00 0 5 5 0 55 0 5 0 5 0 00 0 5 5555 55 0 0 000 5 55 000 5 0 0 0 0 0 55 55 55 0 5 0 55 0 0 0 0 0 0 0 0 555 0 5 55 000000 0 0 0 0 0 0 5 00 5 0 55 5 0 5 000 0 0 55 5 0 0 0 0 00 55 5 0 0 0 0 0
consensus : CTGTTN--AAATATATTTTTA---ACA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA---ACGTTT----CT--AG-GTAAGGC-A-TTTCTT-AG------CT--TAGGA-ATAA-AGATTT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-AT-C---TA------CCACT-TTCTATTGCCAAGCT-TATGAT-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCGGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTAT-GAAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CATG-AGTCCCAAGC---ATTGT-GGTCACTTGTGGATTGATAAA--GTTT--AAAAGC-AAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAAATTTTGGAC-C-AAAGTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT--GAAACATC-TTTTGGA-TGAGGAGATCCACCTCCCCAT-ATTT-CACTACAATA-AAGAAGAACCGGTAGTA-CAA--TAACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTCTTTTTCATT--TAAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAAT-GTAA-ATTCATTCC--CTTGAGGTTT-GCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGAACAATANTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
Reference ( family-1830 ) : CTGTTC--AAATATATTTTTA---ACA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA---ACGTTT----CT--AG-GTAAGGC-A-TTTCTT-AG------CT--TAGGA-ATAA-AGATTT----ACA-A-TG----AAAAAGAAAATGAA---T--T-CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-ATGC---TA------CCACT-TTCTATTGCCAAGCT-TATGAT-GCAC-CTC--AATCTAATTTT-ACTAAGAGAGGATCTCTTCAGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCCTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGNTNTGGAAAATCCAAAGGATTATCTTGGAATAAGGAAAT--ATTTTTCCCATGNAGTCCCAAGCCCAATTGTCGGTCACTTGTGGATTGATAAA--GTTTAGAAAAGCNAAGAATC-AGACGTTATTAAGATG-AATTCGCAATTANCTGGATANTCGAGAAATGNAAAATTTTGGACACAAAAGTGGCAGTCTATTACTTG----------CTGTTAGAC-ACCAGCATTGGATGTTTTT-GCAGTTGCAGGGACCGGAGAGATTTCTTTTAATAAATTTGAAGTGAAA---TTTTTCTATGTTTNNGAAACATCTTTTTGNATTGAGGAGATCNACTTCCCCATNATNCGCACTACAATA-AAGAAGAACCGGTAGTACCAATGTAACATCAAAAGGTTTTTTCTAAAAGTTTACACTGG-ATATATCNAATACCAATAATTCTTTTTCATTTGTAAAACGATGCGTTTTC-TGGCTTTTTCTCAATAAGGCAACAGCTGTTACTAAGTTACACTTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGT-ATT-TTGTT-CACAATTTG-TATTATATTGCCATTAATAGTAA-ATTCATTCCATCTTGAGGTTTGGCCATTTTGAGTTAGAATATCAAAACTTTTGGATTTATTCTACATCGACCTTGAGCAGTTTCCAGTCTTGAACAACANTA-TTCTGGAGAATATC--AAGGC--TTTTGTAAACGCACTTTGCTTTCAGAAAGATTACAATATCATC-AGCA-GTATAATCAGACAGTTTACGATGAACATTGTTTAC-TTGTACAGGGATCACA----TTCTTCCAT-TTTCA--TCTATTGAC-AT--ACCATCCAATAAATATA-TTGAAGAGTATCGGGCTTAAAAACATCCCCTTGTTTTGAC---CCACATTC-AGAATTGAATATCATCACTTACAACCATATCAAAATTTTTATTCTACTTGTTGTTCTTTTTACTATA-CATGGGAAAAATAGAATGATTAAACAGTTTTGTTGAGAAATATTAGATGTCAAAGGAGATTTAT-AAATAAACCCAATCTCCAGACAGTG--TCAATGCTTTCCTAAGATCAAGTGAAGCCGGCATTAT-CTTTTTTGTTTTTTGTAATGGCAATTA-TATGTTCGTATACTGAGAATAAGTGGTCTTTGA-TGTCCT-CAGTTTTGTCTTTGAAATCCGAATTTTGG---TTTTCAACTTATTAA-TGACGATAGA-GTTTAC-AATTCAAGTAGTCTAGTTGGGGAATTATTCCTATTGAAAAGTTTTTCCTAGGTTGATGGT-AATTGACTGATACTCTGTTGTTGTTTGAGGCGTTCAAGCCTATT-ACC-AGATTTATTAACAAAGCAAGTACTAAAATTAACTTT--AT--TCCAACTTTTTGGGAATCACCAGGAATTGAGT-TTAAGTGGAACAATTTTT-CAGAGGTTTCAACATATGCATATCCCCCATTTTTCAGCATTTCATT--GATATACATATCCATGGAAGATCTTTCCCATTTTT---CGAACTTTAAGCAGCCTTTATTTGATAATTGGTAATG-TCTGGTTCAAGGAAAATGATTTATGTTGCAGCTGTTTCTGTTCAAAAACAT
gi|1 : CTGTTGTAAAATATATTTTTA---AAA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAC---ACATTT----CT--AG-GTAAGGC-A-TTTCTTAAG------CT--TAGGA-AT-A-GGA-TT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CAGCT--TCA-GTC-ACA-CCA----GTATT-GC--ACAT-TTTGCAA-CATCTTTG-ATTCACCT-GAAGTGG-ATT-AT-AT-C---TA------CCACT-TTCTATTGC--AACT-TATGAA-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCAGA-T--TTTTTCT-GAG--TAAATCAACATAATG-GACTTC-TTTTACTTGTGGATAATTTTTTT---ATAAAAATT-CAAG-T--TTTTTTGAAACCA-AAA-A-TGTTTGATG-----ATTGCT---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTG-TGAA-T----GAATTTTTAT-ATTTTGTAA-TGGTAT-GAAAATCCGA--GATTATC-TAGAAT-AGAAAATAAATTTT---CAT--AGT-CCAAGC---ATTGTGGGTCAC-TGTGGATTGATAAAATGTTT--AAAAGCCAAGAATCGGGACGTCATTAAGATGAAATTC-CAA-TATTT-AATACTCGAG-AATGAAATTTTTTGGAC-C-AAAGTGGCAGTC--TTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAG-TGC----ACTCGAG-GATTTC-TTTAATAAATTTGAGGCGAAAAATTTTTCCTATG-TTGAAAAACATC-TGTTGGA-TGAGAAGATCCACCTCCCCATAATTTCAACTACAATACAAGAAGAACTGGTAGTA-CAA--TAACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGGTATATATCCATTACCAATAATTCTTTTTCATT--TAAAAC-ATGC-TTTTCGTGGCTTTTTC-CAATAA-GC-ACAGCTGTTGATAAGTTAAACCTTCCATTGCA-TTCAACATAA-ACCTAA-ATAA-CAGTAATTATTGGTAGGCAATTTGTTATTATATTCGCATTAATTGTAACATTCATTC---CCTGAGGTT--GCCATTCTGAGTTA-AATATCAAAACTTTTGGATTTA-TCTACATTGACCT---GCAGTTTCCAGT-TTGAGC-ATATTGCTTCT-GAGAATATTCAAAGGCTGTTTTGTAAAC-CATGTTTCTTTAGAAAAGATTACAATTTC-TCAAGCATACATAA-CAGACAGTTTAC-ATGAACATTGTTTACTTTGTACAAGGATCCCAAATTTTTTTCCATGTTTCAAGTCCATTGACAATTAACCAT-CAATAAAT-TATTTGAAGAGT-TGGGGCTT-AAAACATGCCCT--TTTTGACACGCCAC-TTCAAGAATTGAATA-CATCACTTA-AACCATCAGAAAAATTTTATTCTACTCGTTG----CCTTACTATACCATGG--AAAATAGAAT-ATAAAACAGTTT--TTGGAAAATATCAGAT-TC-AAGGAG-TTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAATGAGGCC-GCA-TATACTTTTTTG-TTTTTGTACTGTGAATTATTGTGTTGATA-A--GAGAATAAGTGGTC--TGAGTGTCCTACAGTT---TCTTTGAAA-CCAAG--TTGGTTTTTTTC-ACTTATTAATTGAC-ATAGATGTTTACAAATTCTATAAGTCTAGTATGGGA--TATT-CTATTGAAAAGTTTTCCTTAGGTTGA-GGTAAATTGCAT-ATACTCT-TAGTTGTTT-AGG-GGTCAAGCCTATTGACCAAGAT---TTAATACAGCAATTACTAAA--TAACTTTCAATAGTCCAACTTCTTGGGAAT-ACCCAGAATTGAGTATAAAGT-GAACAATTTTTCCAAAGCTTTCAACATTGGCATATCCCCCA-TTTTCA-CATTTCATTTGAATAT-CATAATCATGGAGGA-CTCTTCCATTTTTTCACGAACATAAGGCAGTCTT--TTTCATTAATGGTCATGTTCTGGTTCA--GGAAATG--TTA-GTTG-AGTT-TATCCGTTTCAAACCAT
gi|10 : -TATG-T-GCAC--TC--AATCGAATTTT-ACTAAGAGGGGATCTCT-CGGA-TC-TTTTTCT-GAA--CGAATCAACAT-ATG-GACTTC-TTTTTCTAATGTTTAATTTTTTTTTCAT-AAAATT-CAAGGT--TTTTTT-AA--CATAAG-G-TTTTTGATA-----ATTGCT---TC-TGAGTGCA--CTGATCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAAATTTTAT-ATTTTGTAA-TGTT
gi|14 : GAG-GATTTCTTT-AATAAATTTGAAGTGAAA---TTTTTCTATGTTT--GAAACATC--TTTGCA--GA-GAGATCCAC-TCCCCATTATT--CACTACAATA-AAGAAGAACCGGTAGTA-CAA--TAACATCAAAAG--TTTTTCTAAAAGTTTACA-TGG-AT-TATCCAATACCAATAATTC-TTTTCATT--TAAAACg
gi|15 : ATATTGCCATTAATAGTAA-ATTCATTCC--CTTGAGGTTT-GCCA-TTTGAGTTA-AATATCAAAAC-TTTGGATTTATT-TACATCGACTT---GCAGTTTCCAGT-TTGAACAATA
gi|16 : TTT----CTTAAG-GTAAGGC-A-TTTCT---GCTCATTCT--TACG--ATTA-AGATTT----ACA-ATTG----GAAAAGAAAATGAT---TTCT-CACCTGCTCAGATCGACA-CAAG---GTGTG-AC--ACAT-Tt
gi|2 : TACTTAT--ATAATTTTCT----AT-AAAATTTCAAG-TCGTTTTTT-TAACCA-AAAGA-TTTTGGGTGTATGAATTGACGGATCCTGAGTGCAAGTTGGTCAATTTCATTCTTTGTTTTATAGTTTTGGTAA-AAGGGGT-GAATTTTTTGAATTT--AT-ATTTTGTAAATGTTTTGGAAAATCCAAAGGATTATCT-GAAATA-GGAAA---ATTTT---CATGTAGTCC-AAGC---ATT-TCGGTCA-TTGTGGATTGATAAA--GTTTAGAAAAGCAAAGA-------CGT-AT-AAGATG-A-TTC-CA--TATCTGAATACTCGAGAA-TGTAAAATTTTGGACACAAAAGTGGCAGTCTATTACTTG----------CTGTTAGAC-ACCAGCATTGGATGTTTTT-GCAGTTGCAGGGACCGGAGAGATTTCTTTTAATAAATTTGAAGTGAAA---TTT--CTATGTTTT-GAAACATCTTTTTGGATTGAAGAGATCAACTTCCC-AT-ATGTGCACTACAATA-A-GAAGA--TGGTAGTACCAATGTAATATCAAAAAGTTTTTTCTAAAAGTTTACACTGG-ATAT-TCAAATACCAATAATTCTTTT-CATTTGTAAAACGATGCGTTTTC-TGGCTTTTTCTCAATAAGGCAACAGCTGTTACTAAGTTACACTTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGT-ATT-TTGTT-CACAATTTG-TATTATATTGCCATTAAT-GTAA-ATTCATTCCAT-TTGAGGTTTGGCC-TTTTGAGTTAGAATATCAAA-CTTTTGGATTTATTCTACATTGACCTTGAG-AGTTTCCAGTCTTGAACA-CAATA-TTCTGGAGAATATC--AAGGC--TTTTGTAAACGCACTTTGCTTTCAGAAAGATTACAATATCATC-AGCA-GTATAATCAGACAGTTTACGATGAACATTGTTTAC-TTGTACAGGGATCACA----TTCTTCCAT-TTTCA--TCTATTGAC-AT--ACCATCCAATAAATATA-TTGAAGAGTATCGGGCTTAAAAACATCCCCTTGTTTTGAC---CCACATTC-AGAATTGAATATCATCACTTACAACCATATCAAAATTTTTATTCTACTTGTTGTTCTTTTTACTATA-CATGGGAAAAATAGAATGATTAAACAGTTTTGTTGAGAAATATTAGATGTCAAAGGAGATTTAT-AAATAAACCCAATCTCCAGACAGTG--TCAATGCTTTCCTAAGATCAAGTGAAGCCGGCATTAT-CTTTTTTGTTTTTTGTAATGGCAATTA-TATGTTCGTATACTGAGAATAAGTGGTCTTTGA-TGTCCT-CAGTTTTGTCTTTGAAATCCGAATTTTGG---TTTTCAACTTATTAA-TGACGATAGA-GTTTAC-AATTCAAGTAGTCTAGTTGGGGAATTATTCCTATTGAAAAGTTTTTCCTAGGTTGATGGT-AATTGACTGATACTCTGTTGTTGTTTGAGGCGTTCAAGCCTATT-ACC-AGATTTATTAACAAAGCAAGTACTAAAATTAACTTT--AT--TCCAACTTTTTGGGAATCACCAGGAATTGAGT-TTAAGTGGAACAATTTTT-CAGAGGTTTCAACATATGCATATCCCCCATTTTTCAGCATTTCATT--GATATACATATCCATGGAAGATCTTTCCCATTTTT---CGAACTTTAAGCAGCCTTTATTTGATAATTGGTAATG-TCTGGTTCAAGGAAAATGATTTATGTTGCAGCTGTTTCTGTTCAAAAACAT
gi|3 : ttcaCTGTTC--AAATATATTTT-A---ACAATGTA---A-------CTTTCATGTGTTCA-A--CT-AATAT-TTCTCTG-TGTTTATGT-----TATAAA----CATTT----TT--AA-GTAGGGCCA-TTTCTT-AG------CT--TAG-A-ATAA-GGAAT-----ACA-A-TG----AAAAAAGGAATGAAATTT--T-CATCT--TCA--TC-ACAACCAG----TATT-GC-A-CAT-ATTGCAA-CATCTTTG-ATTCAAAT-GAGGTGGAATTTATTAT-C---TA------CCACT-T-CTATTGCCAA-CTATATGA--GCAC--TC--AATCTAATTTTTGCTAAGAGAGGATCTCT-CGCA-TT-TTTTTCT-GAG--TAA-TCAACAT-ATG-GACTTC-TTT-ACTTGTGTATA--TTTTTT---AT-AAAATT-CAAG-T--TTTTTG-AAACCA-AAA-ATTTTTTGATG-----ATTG-C---TCTTGAGTGCA--CTGGTCAAAT--TTTCTTTGTTTTATG--TTTGGTAATAAGGTGTTGAATTG---GAATTTTTATAATTTTGTAA-TG-TAT--AAAATCCAA--GATTATCTTAGAATAAGAAAAT--ATTTTTCCCATAAAGTCCCAAGCCCAATTGT-GGTCACTTGTGGATTGATAAA--GTTT--AAAAGC-AAGAATC-AGACGTTATT-AGATG--ATTCGCAATTAATT-GATAATCGAGAAATG---AATTTTGGAC-C-AAAGTGg
gi|4 : tacaaatacaaatatttattggcacacacaaacacaattacaaacattgcaaaaggcccattgaacatcatttggcagtgttaatttacatttttttaatgtaatagcatgttgaatttctatattcacaacacgtcctttgataaatttcctgtaatttttaaaacttttgtgtaacatcaCTGTTC--AAATATATTTTTA---ACA-TGTT---A-------CTTTCAT--GT-CAGAGACTGAATATATTCTCTGCTGTT-ATGT-----TATAAA----CATTTTTCTCT--AGTGTA-GGC-ACTTTCTT-AG------CT--ATGTA-ATAG--GATTT----ACACA-TG----AAAAAGGAAATGAA---T--TTCATCT--TCA-ATC-ACA-CCAG----TATTTGC-A-CATATTTGCAAACATCTTTGCATTTCAATAGAAGTGGAATT-AT-ATGC---TGAGCTCTCCACTCTTCTATTGCCAA-CT-TATGATAGCAC--TC--AATCTAATTTT-GCTAAGAGAGGATCTC-TCAGATTT-TTTTTCTGGAG--TAAATCAACAT-ATGCGACTTCTTTTTACTTGTGTATA
gi|5 : atacaaatttactaaattatttattgcgtccacaaacacaatacaataatggcaaagaccattatgaacatattttggcaagtcttgtataatttacaatttttttttattttgtacaaatagcattgttgatttctatatcaaaacagtctttgcataattcactgtaattttttaagactttgtagtcaaatccaTGTTG--AAATATATTTTTC---ATC-TGTA---A-------CTTTTAT-TGT-CC-AGATT-AATAT-TTCTCTG-TGTT-ATGT-----TA-AAA---ATGTTT----CTA-AG-GT-AGGC-A-TTTCTT-AG------CT--TAGAATATAAGAGATTTGCAAACA-A-CGAAAAAAAAAAAAAATGAAT--T--T-CATCC--TCA-ATC-ACA-CCAGTACGTATT-GCAAACAT-TT--CAA-CATCTTTA-ATTC-AAT-GATATAGAATT-AC-ATACCTATA------CCACT-TTCTACTG-CAAGTT-TATG-T-GCA--CTC--AATCTAATTTT-ACTAAGAGAGGATCTC-TCAGA-TC-TTTTTCT-GAGAATAAA
gi|6 : aaaacaaatacaactatttattggcacaaacacaattacaataatttgtaaagacccatgggacatcattaaacaatatacatattttatgtaatcgcatgtccctgactcctgtacttattcaaaacagtctccaataaatttcacagaaatttttgatactttctcaaatctgtatatcaaCTGTTC--AAATATATTTTAA---ACA-TGTTTGTA-----A-CTTT-----GT-CA-AGACT-ATTAT-TTTTCTG-TGTT-ATGTTAGCCTATAAATAGATGTTT----CTG-AG-GT-AGGC-A-TTTCTT-AG------CTTCTAAGA-ATAA-A-ATTT----ACA-A-TG----AAAAAGAAAAT------T--C-CATCT--TCA-ATC-ACA-CCA----GTATT-ACGAACA---TTACAA-C--------------AT-GATGTGGAATT-AT----C----------------------TTG-CAAGTT-TATG-T-GCACTCTTGAAATCTAATTTT-ACTGAGAGAGGATCTC-TCAGA-TCTTTTTTCT-GAG--T
gi|7 : ataagatacaaaagttggcgcaaacacaatttaattggcaaaggccctttgaatgtttacattattttttatgcaatttaaatttcatcgaaatttttaaaactttgtatacatcaTGTCA--AAATATATTTTTAGTAACA-TGTA---A-----C-TTTTCAT-TAT-C---------ATAC-TTTGGTG-TG-C-ATGT-----TACA
gi|8 : ctatacacatagcaataactatatttatttggcacaacgatacattaacaataattggctaaaagtgccgcattgaacatagcatttggcagtgttaatttacatttttatgagtagatgagtcatgtttgatctttctataattcaaaacaagtctttgataaattcatgtaaatataattataaagactttgtagtaaatccacttgcaCTGTTT--AAATATATTTTTA---GCA-TGTA---ACTTTCATCTTTCAT-TGT-CA-AGACT-AATAT-TTTTCTG-TGTT-ATTT-----TAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATATAAATACAAATATTTATTGGCACAAACACAATTACAATAATTGACAAAGGCCCATTGAACATCATTTGGCAGTGTTTACATATTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAACTTTGTGTATATCACTGTTCAAATATATGTAAATATAACTTCAGAATCATCTTATTTAATAGTATGAATAGTGT
Unaligned ( gi|11 ): CACAAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATATATTTCAAGTGCTGTAATTTTTAAGACTTTGTGTAAATCACTGCAGCCAGTTTTCTGATACTTCTTTAAAATTATTTTCATCTCAATATTGAAGAGTTTC
Unaligned ( gi|12 ): TCTAAATATAAATCGTACAAAAACCAATACAAATATTATTGGCACAACACATAATTCAATAATTGGCAAAGGCCCATTGAACATCATGGCAGTGTTTCATTTGTTTATGTATAACATATTTTCTATATTTCCAAAAGCGAGGTGGCGGTTGATTATAGATGTTTCACTGTAACTAGTTAAAGACTTTGCGAAATGATCACGGTTCAGAATATT
Unaligned ( gi|13 ): AATATACAAATACAAATATTTATTGGCACAAACACAATTACAATAATAATTTAATTGGCAAAAGCCCATTGAACGTCATTTGGCAGTGTTTACATTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAATTTTGATATATCACTGTTCAAATATATTTTTAA
Unaligned ( gi|17 ): TACCACAGCACTAACATTACTTTTTATACAAATACAAATACAATACAAATATTAATTGGCAAAGGCCCATTGAACATCATTAGACAGAGTTTACATATTTTT
Unaligned ( gi|18 ): AAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTATGTAATAGCATGTTGATTTCTAT
Alignments
lowQualScore : 111 33333333333 11111 2222 1111 22 222222 11 1111 1111 11111111 22222 222 11 4444444444444 1 1 222 22 22 11 1 1 1 2222 1 1 1111 1 1 111 22222 22222 11 11 11 1 3333 1 1 22 11 222 222 333 222 1 11 11 11 1 222222 1 11 222 1 22 1 22222 1 1 11 4444444444 1 1 1 2222 1 222 11 2222 2222222 1 1 11111111 22 1 11 11 1 1 2 11 1 1 1 1 1 1 1 1 1 1 1 1 11 1 111 1 111 1 222 1 11 2222 1 11 11 1 1 1 1 1 1 1 2222 1 11 1 11 1 1 1 1 1 11 222 1 1 1 1 2222 1 11 1 11 1 1 1 1 11 1 1 1 1 1 2222 11 1 1 222 1 11 222 1 1 1 1 1 11 1 1 1 1 1 1 1 1 1 222 11 11 11 1 1 1 1 1 1 11 1 1 222 11 1 11 11 1 1 1
lowQualScore : 888 1 000 5 66666666666 77 5 77 0 5 5 5 5 44444 0 4444 4444 22 6 99 6 6 6 888888 5 6 99 3 4444 6 6 4444 88888888 99 88 6 6 55555 6 888 6 0 8 0 8 11 8 1 0 88 8 2222222222222 999 0 3 6 555 11 99 6 22 0 6 00 6 99 0 0 0 0 0 0 3 0000 0 0 4444 0 3 0 444 55555 44444 3 33 33 33 0 66 3 1111 3 0 0 9 00 0 88 7 6 7 555 333 888 6 6 333 3 44 88 88 3 000000 2 44 888 3 00 3 7 7 44444 3 3 88 1111111111 5 5 5 3333 2 3 7 7 0 333 11 7 1111 0000000 2 2 6 99999999 00 7 0 3 88 00 3 3 7 7 3 88 5 5 5 5 5 5 1 1 5 5 5 5 5 5 1 88 5 777 3 666 7 7 3 7 7 7 6 0 333 6 3 88 7 8888 5 88 88 5 2 1 2 1 5 5 5 5 5 5 1 4444 5 88 5 88 5 5 5 5 1 5 1 88 000 5 5 5 5 333 1 4444 5 88 5 1 88 5 5 5 5 88 5 5 5 5 1 22 5 2 4444 88 5 5 111 5 88 111 5 5 5 5 5 1 22 22 88 5 5 5 22 5 5 1 5 5 1 5 5 111 1 1 88 88 88 5 2 5 1 5 5 1 22 5 5 88 5 1 5 111 1 1 88 1 1 1 1 5 88 88 5 5 5 1 1 1
lowQualScore : ... . ... . ........... .. . .. . . . . . ..... . .... .... .. . .. . . . ...... . . .. . .... . . .... ........ .. .. . . ..... . ... . . . . . .. . . . .. . ............. ... . . . ... .. .. . .. . . .. . .. . . . . . . . .... . . .... . . . ... ..... ..... . .. .. .. . .. . .... . . . . .. . .. . . . ... ... ... . . ... . .. .. .. . ...... . .. ... . .. . . . ..... . . .. .......... . . . .... . . . . . ... .. . .... ....... . . . ........ .. . . . .. .. . . . . . .. . . . . . . . . . . . . . . . .. . ... . ... . . . . . . . . ... . . .. . .... . .. .. . . . . . . . . . . . . .... . .. . .. . . . . . . . .. ... . . . . ... . .... . .. . . .. . . . . .. . . . . . .. . . .... .. . . ... . .. ... . . . . . . .. .. .. . . . .. . . . . . . . . ... . . .. .. .. . . . . . . . .. . . .. . . . ... . . .. . . . . . .. .. . . . . . .
lowQualScore : 999 7 000 7 44444444444 11 7 11 7 7 7 7 7 33333 1 6666 2222 55 7 00 7 7 7 333333 2 7 00 5 2222 7 7 2222 77777777 22 33 7 7 00000 7 000 7 8 0 8 0 00 0 0 8 88 0 6666666666666 444 0 2 7 777 77 22 7 88 7 7 33 7 22 8 0 0 0 8 6 2 8888 0 0 8888 0 2 0 888 00000 22222 2 88 88 88 0 55 2 2222 2 0 0 2 00 7 33 3 7 3 777 333 777 7 7 333 3 00 33 33 3 777777 0 77 000 3 77 3 3 3 00000 3 3 55 0000000000 5 0 5 0000 5 3 3 3 7 333 00 3 7777 7777777 0 0 7 33333333 77 3 7 3 33 33 3 3 3 3 7 33 0 0 0 5 0 5 0 0 5 0 0 5 5 5 0 00 5 777 3 000 3 3 3 3 3 3 7 7 333 7 3 33 3 5555 0 00 00 0 5 0 5 0 5 5 5 5 0 5 0 5555 0 00 5 55 0 5 5 5 0 5 0 00 555 5 5 5 0 000 0 0000 0 00 0 0 00 0 5 5 5 00 0 5 5 5 0 00 5 5 5555 55 0 5 000 5 55 555 5 5 0 5 5 0 00 00 55 0 5 5 00 0 0 0 0 0 0 0 5 555 0 0 55 00 00 0 5 5 0 0 0 0 00 5 0 00 5 0 5 000 0 0 55 0 0 0 0 5 00 55 5 0 0 0 0 0
consensus : CTGTTN--AAATATATTTTTA---ACA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA---ACGTTT----CT--AG-GTAAGGC-A-TTTCTT-AGCT------TAGGA-ATAA-GGATTT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-AT-C---TA------CCACT-TTCTATTGCCAAGCT-TATGAT-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCGGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGC-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTA-CAA--TAACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTC-TTTTCATT--TAAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATATTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
Reference ( family-1830 ) : CTGTTN--AAATATATTTTTA---ACA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA---ACGTTT----CT--AG-GTAAGGC-A-TTTCTT-AGCT------TAGGA-ATAA-AGATTT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-AT-C---TA------CCACT-TTCTATTGCCAAGCT-TATGAT-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCGGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGT-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTA-CAA--TAACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTCTTTTTCATT--TAAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATANTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
gi|1 : CTGTTGTAAAATATATTTTTA---AAA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAC---ACATTT----CT--AG-GTAAGGC-A-TTTCTTAAGCT------TAGGA-AT-A-GGA-TT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CAGCT--TCA-GTC-ACA-CCA----GTATT-GC--ACAT-TTTGCAA-CATCTTTG-ATTCACCT-GAAGTGG-ATT-AT-AT-C---TA------CCACT-TTCTATTGC--AACT-TATGAA-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCAGA-T--TTTTTCT-GAG--TAAATCAACATAATG-GACTTC-TTTTACTTGTGGATAATTTTTTT---ATAAAAATT-CAAG-T--TTTTTTGAAACCA-AAA-A-TGTTTGATG-----ATTGCT---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTG-TGAA-T----GAATTTTTAT-ATTTTGTAA-TGGTATG-AAAATCCGA--GATTATC-TAGAAT-AGAAAATAAATTTT---CAT---AGT-CCAAGC---ATTGTGGGTCAC-TGTGGATTGATAAAATGTTTA--AAAGCCAAGAATCGGGACGTCATTAAGATGAAATTC-CAA-TATTT-AATACTCGAG-AATG-AAATTTTTTGGAC-CAAA-GTGGCAGTC--TTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAG-TGC----ACTCGAG-GATTTC-TTTAATAAATTTGAGGCGAAAAATTTTTCCTATG-TT-GAAAAACATCTGTT-GGAT-GAGAAGATCCACCTCCCCATAATTT-CAACTACAATACAAGAAGAACTGGTAGTA-CAA--TAACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGGTATATATCCATTACCAATAATTCTTTTTCATT--TAAAAC-ATGC-TTTTCGTGGCTTTTTC-CAATAA-GC-ACAGCTGTTGATAAGTTAAACCTTCCATTGCA-TTCAACATAA-ACCTAA-ATAA-CAGTAATTATTGGTAGGCAATTTGTTATTATATTCGCATTAATT-GTAACATTCATTCC-C-TGAGG-TTGCCATTCTGAGTTA-AATATCAAAACTTTTGGATTTA-TCTACATTGACCT---GCAGTTTCCAGT-TTGA--GC-ATATTGCTTCT-GAGAATATTCAAAGGCTGTTTTGTAAAC-CATGTTTCTTTAGAAAAGATTACAATTTC-TCAAGCATACATAA-CAGACAGTTTAC-ATGAACATTGTTTACTTTGTACAAGGATCCCAAATTTTTTTCCATGTTTCAAGTCCATTGACAATTAACCAT-CAATAAAT-TATTTGAAGAGT-TGGGGCTT-AAAACATGCCCT--TTTTGACACGCCAC-TTCAAGAATTGAATA-CATCACTTA-AACCATCAGAAAAATTTTATTCTACTCGTTG----CCTTACTATACCATGG--AAAATAGAAT-ATAAAACAGTTT--TTGGAAAATATCAGAT-TC-AAGGAG-TTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAATGAGGCC-GCA-TATACTTTTTTG-TTTTTGTACTGTGAATTATTGTGTTGATA-A--GAGAATAAGTGGTC--TGAGTGTCCTACAGTT---TCTTTGAAA-CCAAG--TTGGTTTTTTTC-ACTTATTAATTGAC-ATAGATGTTTACAAATTCTATAAGTCTAGTATGGGA--TATT-CTATTGAAAAGTTTTCCTTAGGTTGA-GGTAAATTGCAT-ATACTCT-TAGTTGTTT-AGG-GGTCAAGCCTATTGACCAAGAT---TTAATACAGCAATTACTAAA--TAACTTTCAATAGTCCAACTTCTTGGGAAT-ACCCAGAATTGAGTATAAAGT-GAACAATTTTTCCAAAGCTTTCAACATTGGCATATCCCCCA-TTTTCA-CATTTCATTTGAATAT-CATAATCATGGAGGA-CTCTTCCATTTTTTCACGAACATAAGGCAGTCTT--TTTCATTAATGGTCATGTTCTGGTTCA--GGAAATG--TTA-GTTG-AGTT-TATCCGTTTCAAACCAT
gi|10 : -TATG-T-GCAC--TC--AATCGAATTTT-ACTAAGAGGGGATCTCT-CGGA-TC-TTTTTCT-GAA--CGAATCAACAT-ATG-GACTTC-TTTTTCTAATGTTTAATTTTTTTTTCAT-AAAATT-CAAGGT--TTTTTT-AA--CATAAG-G-TTTTTGATA-----ATTGCT---TCT-GAGTGCA--CTGATCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAAATTTTAT-ATTTTGTAA-TGTT
gi|14 : GAG-GATTTCTTT-AATAAATTTGAAGTGAAA---TTTTTCTATGTTT-G--AAACATCTTT--GCA--GAG-AGATCCAC-TCCCCAT-TATT-C-ACTACAATA-AAGAAGAACCGGTAGTA-CAA--TAACATCAAAAG--TTTTTCTAAAAGTTTACA-TGG-AT-TATCCAATACCAATAATTC-TTTTCATT--TAAAACg
gi|15 : ATATTGCCATTAA-TAGTAA-ATTCATTCC-CTTGAGGTTTGCCATTT-GAGTTA-AATATCAAAACTTT-GGATTTATT-TACATCGACTT---GCAGTTTCCAGT-TTGA--ACAATA
gi|16 : TTT----CTTAAG-GTAAGGC-A-TTTCT---GCTCATTCTTACGA-TTAA--GATTT----ACA-ATTG----GAAAAGAAAATGAT---TTCT-CACCTGCTCAGATCGACA-CAAG---GTGTG-AC--ACAT-Tt
gi|2 : TACTTAT--ATAATTTTCT----AT-AAAATTTCAAG-TCGTTTTTT-TAACCA-AAAGA-TTTTGGGTGTATGAATTGACGGATCCTGAGTGCAAGTTGGTCAATTTCATTCTTTGTTTTATAGTTTTGGTAA-AAGGGGT-GAATTTTTTGAATTT--AT-ATTTTGTAAATGTTTTGGAAAATCCAAAGGATTATCTGA-AATAGGAAAAT----TTT---CAT-GTAGTCC-AAGC---ATTTC-GGTCA-TTGTGGATTGATAAA--GTTTAGAAAAG-CAAA------GACGT-AT-AAGATG-A-TTC-CA--TATCTGAATACTCGAGAA-TGTAAA-ATTTTGGACACAAAAGTGGCAGTCTATTACTTG----------CTGTTAGACA-CCAGCATTGGATGTTTTTG-CAGTTGCAGGGACCGGAGAGATTTCTTTTAATAAATTTGAAGTGAAA---TTT--CTATGTTTTG--AAACATCTTTTTGGATTGAAGAGATCAACTTCCC-AT-ATGTGC-ACTACAAT--AAGAAGA--TGGTAGTACCAATGTAATATCAAAAAGTTTTTTCTAAAAGTTTACACTGG-ATAT-TCAAATACCAATAATTC-TTTTCATTTGTAAAACGATGCGTTTTC-TGGCTTTTTCTCAATAAGGCAACAGCTGTTACTAAGTTACACTTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGT-ATT-TTGTT-CACAATTTG-TATTATATTGCCATTAA-T-GTAA-ATTCATTCCATTTGAGGTTTGGCCTTTTGAGTTAGAATATC-AAACTTTTGGATTTATTCTACATTGACCTTGAG-AGTTTCCAGTCTTGAACACAATA----TTCTGGAGAATATC--AAGGC--TTTTGTAAACGCACTTTGCTTTCAGAAAGATTACAATATCATC-AGCA-GTATAATCAGACAGTTTACGATGAACATTGTTTAC-TTGTACAGGGATCACA----TTCTTCCAT-TTTCA--TCTATTGAC-AT--ACCATCCAATAAATATA-TTGAAGAGTATCGGGCTTAAAAACATCCCCTTGTTTTGAC---CCACATTC-AGAATTGAATATCATCACTTACAACCATATCAAAATTTTTATTCTACTTGTTGTTCTTTTTACTATA-CATGGGAAAAATAGAATGATTAAACAGTTTTGTTGAGAAATATTAGATGTCAAAGGAGATTTAT-AAATAAACCCAATCTCCAGACAGTG--TCAATGCTTTCCTAAGATCAAGTGAAGCCGGCATTAT-CTTTTTTGTTTTTTGTAATGGCAATTA-TATGTTCGTATACTGAGAATAAGTGGTCTTTGA-TGTCCT-CAGTTTTGTCTTTGAAATCCGAATTTTGG---TTTTCAACTTATTAA-TGACGATAGA-GTTTAC-AATTCAAGTAGTCTAGTTGGGGAATTATTCCTATTGAAAAGTTTTTCCTAGGTTGATGGT-AATTGACTGATACTCTGTTGTTGTTTGAGGCGTTCAAGCCTATT-ACC-AGATTTATTAACAAAGCAAGTACTAAAATTAACTTT--AT--TCCAACTTTTTGGGAATCACCAGGAATTGAGT-TTAAGTGGAACAATTTTT-CAGAGGTTTCAACATATGCATATCCCCCATTTTTCAGCATTTCATT--GATATACATATCCATGGAAGATCTTTCCCATTTTT---CGAACTTTAAGCAGCCTTTATTTGATAATTGGTAATG-TCTGGTTCAAGGAAAATGATTTATGTTGCAGCTGTTTCTGTTCAAAAACAT
gi|3 : ttcaCTGTTC--AAATATATTTT-A---ACAATGTA---A-------CTTTCATGTGTTCA-A--CT-AATAT-TTCTCTG-TGTTTATGT-----TATAAA----CATTT----TT--AA-GTAGGGCCA-TTTCTT-AGCT------TAG-A-ATAA-GGAAT-----ACA-A-TG----AAAAAAGGAATGAAATTT--T-CATCT--TCA--TC-ACAACCAG----TATT-GC-A-CAT-ATTGCAA-CATCTTTG-ATTCAAAT-GAGGTGGAATTTATTAT-C---TA------CCACT-T-CTATTGCCAA-CTATATGA--GCAC--TC--AATCTAATTTTTGCTAAGAGAGGATCTCT-CGCA-TT-TTTTTCT-GAG--TAA-TCAACAT-ATG-GACTTC-TTT-ACTTGTGTATA--TTTTTT---AT-AAAATT-CAAG-T--TTTTTG-AAACCA-AAA-ATTTTTTGATG-----ATTG-C---TCTTGAGTGCA--CTGGTCAAAT--TTTCTTTGTTTTATG--TTTGGTAATAAGGTGTTGAATTG---GAATTTTTATAATTTTGTAA-TG-TAT--AAAATCCAA--GATTATCTTAGAATAAGAAAAT--ATTTTTCCCATAA-AGTCCCAAGCCCAATTGT-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-AGACGTTATT-AGATG--ATTCGCAATTAATT-GATAATCGAGAAATG---A-ATTTTGGAC-CAAA-GTGg
gi|4 : tacaaatacaaatatttattggcacacacaaacacaattacaaacattgcaaaaggcccattgaacatcatttggcagtgttaatttacatttttttaatgtaatagcatgttgaatttctatattcacaacacgtcctttgataaatttcctgtaatttttaaaacttttgtgtaacatcaCTGTTC--AAATATATTTTTA---ACA-TGTT---A-------CTTTCAT--GT-CAGAGACTGAATATATTCTCTGCTGTT-ATGT-----TATAAA----CATTTTTCTCT--AGTGTA-GGC-ACTTTCTT-AGCT------ATGTA-ATAG--GATTT----ACACA-TG----AAAAAGGAAATGAA---T--TTCATCT--TCA-ATC-ACA-CCAG----TATTTGC-A-CATATTTGCAAACATCTTTGCATTTCAATAGAAGTGGAATT-AT-ATGC---TGAGCTCTCCACTCTTCTATTGCCAA-CT-TATGATAGCAC--TC--AATCTAATTTT-GCTAAGAGAGGATCTC-TCAGATTT-TTTTTCTGGAG--TAAATCAACAT-ATGCGACTTCTTTTTACTTGTGTATA
gi|5 : atacaaatttactaaattatttattgcgtccacaaacacaatacaataatggcaaagaccattatgaacatattttggcaagtcttgtataatttacaatttttttttattttgtacaaatagcattgttgatttctatatcaaaacagtctttgcataattcactgtaattttttaagactttgtagtcaaatccaTGTTG--AAATATATTTTTC---ATC-TGTA---A-------CTTTTAT-TGT-CC-AGATT-AATAT-TTCTCTG-TGTT-ATGT-----TA-AAA---ATGTTT----CTA-AG-GT-AGGC-A-TTTCTT-AGCT------TAGAATATAAGAGATTTGCAAACA-A-CGAAAAAAAAAAAAAATGAAT--T--T-CATCC--TCA-ATC-ACA-CCAGTACGTATT-GCAAACAT-TT--CAA-CATCTTTA-ATTC-AAT-GATATAGAATT-AC-ATACCTATA------CCACT-TTCTACTG-CAAGTT-TATG-T-GCA--CTC--AATCTAATTTT-ACTAAGAGAGGATCTC-TCAGA-TC-TTTTTCT-GAGAATAAA
gi|6 : aaaacaaatacaactatttattggcacaaacacaattacaataatttgtaaagacccatgggacatcattaaacaatatacatattttatgtaatcgcatgtccctgactcctgtacttattcaaaacagtctccaataaatttcacagaaatttttgatactttctcaaatctgtatatcaaCTGTTC--AAATATATTTTAA---ACA-TGTTTGTA-----A-CTTT-----GT-CA-AGACT-ATTAT-TTTTCTG-TGTT-ATGTTAGCCTATAAATAGATGTTT----CTG-AG-GT-AGGC-A-TTTCTT-AGCTTC----TAAGA-ATAA-A-ATTT----ACA-A-TG----AAAAAGAAAAT------T--C-CATCT--TCA-ATC-ACA-CCA----GTATT-ACGAACA---TTACAA-C--------------AT-GATGTGGAAT---T-AT-C----------------------TTG-CAAGTT-TATG-T-GCACTCTTGAAATCTAATTTT-ACTGAGAGAGGATCTC-TCAGA-TCTTTTTTCT-GAG--T
gi|7 : ataagatacaaaagttggcgcaaacacaatttaattggcaaaggccctttgaatgtttacattattttttatgcaatttaaatttcatcgaaatttttaaaactttgtatacatcaTGTCA--AAATATATTTTTAGTAACA-TGTA---A-----C-TTTTCAT-TAT-C---------ATAC-TTTGGTG-TG-C-ATGT-----TACA
gi|8 : ctatacacatagcaataactatatttatttggcacaacgatacattaacaataattggctaaaagtgccgcattgaacatagcatttggcagtgttaatttacatttttatgagtagatgagtcatgtttgatctttctataattcaaaacaagtctttgataaattcatgtaaatataattataaagactttgtagtaaatccacttgcaCTGTTT--AAATATATTTTTA---GCA-TGTA---ACTTTCATCTTTCAT-TGT-CA-AGACT-AATAT-TTTTCTG-TGTT-ATTT-----TAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATATAAATACAAATATTTATTGGCACAAACACAATTACAATAATTGACAAAGGCCCATTGAACATCATTTGGCAGTGTTTACATATTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAACTTTGTGTATATCACTGTTCAAATATATGTAAATATAACTTCAGAATCATCTTATTTAATAGTATGAATAGTGT
Unaligned ( gi|11 ): CACAAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATATATTTCAAGTGCTGTAATTTTTAAGACTTTGTGTAAATCACTGCAGCCAGTTTTCTGATACTTCTTTAAAATTATTTTCATCTCAATATTGAAGAGTTTC
Unaligned ( gi|12 ): TCTAAATATAAATCGTACAAAAACCAATACAAATATTATTGGCACAACACATAATTCAATAATTGGCAAAGGCCCATTGAACATCATGGCAGTGTTTCATTTGTTTATGTATAACATATTTTCTATATTTCCAAAAGCGAGGTGGCGGTTGATTATAGATGTTTCACTGTAACTAGTTAAAGACTTTGCGAAATGATCACGGTTCAGAATATT
Unaligned ( gi|13 ): AATATACAAATACAAATATTTATTGGCACAAACACAATTACAATAATAATTTAATTGGCAAAAGCCCATTGAACGTCATTTGGCAGTGTTTACATTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAATTTTGATATATCACTGTTCAAATATATTTTTAA
Unaligned ( gi|17 ): TACCACAGCACTAACATTACTTTTTATACAAATACAAATACAATACAAATATTAATTGGCAAAGGCCCATTGAACATCATTAGACAGAGTTTACATATTTTT
Unaligned ( gi|18 ): AAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTATGTAATAGCATGTTGATTTCTAT
Alignments
lowQualScore : 111 33333333333 11111 2222 1111 22 111111 11 1111 1111 11111111 22222 222 11 4444444444444 1 1 222 22 22 11 1 1 1 2222 1 1 1111 1 1 111 22222 22222 11 11 11 1 3333 1 1 22 11 222 222 333 222 11 11 11 11 1 222222 1 11 222 1 22 1 22222 1 1 11 4444444444 1 1 1 2222 1 222 11 2222 2222222 1 1 11111111 1 1 11 11 1 1 1 11 1 1 1 1 1 1 1 1 1 1 1 1 11 1 111 1 111 1 222 1 11 1111 1 11 11 1 1 1 1 1 1 1 2222 1 11 1 11 1 1 1 1 1 11 222 1 1 1 1 2222 1 11 1 11 1 1 1 1 11 1 1 1 1 1 2222 11 1 1 222 1 11 222 1 1 1 1 1 11 1 1 1 1 1 1 1 1 1 222 11 11 11 1 1 1 1 1 1 11 1 1 222 11 1 11 11 1 1 1
lowQualScore : 888 1 000 5 66666666666 77 5 77 0 5 5 5 5 44444 0 4444 4444 22 6 99 6 6 6 999999 99 5 6 33 3 4444 6 6 4444 88888888 99 88 6 6 55555 6 888 6 0 8 0 8 11 8 1 0 88 8 2222222222222 999 0 3 6 555 11 99 6 22 0 6 00 6 99 0 0 0 0 0 0 3 0000 0 0 4444 0 3 0 444 55555 44444 3 33 33 33 0 66 3 1111 3 0 0 9 00 0 88 7 6 7 555 333 888 6 6 333 44 44 88 88 3 000000 2 44 888 3 00 3 7 7 44444 3 3 88 1111111111 5 5 5 3333 2 3 7 7 0 333 11 7 1111 0000000 2 2 6 99999999 3 7 7 0 3 88 00 3 3 7 7 3 88 5 5 5 5 5 5 1 1 5 5 5 5 5 5 1 88 5 777 3 666 7 7 3 7 7 7 6 0 333 6 3 88 7 5555 5 88 88 5 2 1 2 1 5 5 5 5 5 5 1 4444 5 88 5 88 5 5 5 5 1 5 1 88 000 5 5 5 5 333 1 4444 5 88 5 1 88 5 5 5 5 88 5 5 5 5 1 22 5 2 4444 88 5 5 111 5 88 111 5 5 5 5 5 1 22 22 88 5 5 5 22 5 5 1 5 5 1 5 5 111 1 1 88 88 88 5 2 5 1 5 5 1 22 5 5 88 5 1 5 111 1 1 88 1 1 1 1 5 88 88 5 5 5 1 1 1
lowQualScore : ... . ... . ........... .. . .. . . . . . ..... . .... .... .. . .. . . . ...... .. . . .. . .... . . .... ........ .. .. . . ..... . ... . . . . . .. . . . .. . ............. ... . . . ... .. .. . .. . . .. . .. . . . . . . . .... . . .... . . . ... ..... ..... . .. .. .. . .. . .... . . . . .. . .. . . . ... ... ... . . ... .. .. .. .. . ...... . .. ... . .. . . . ..... . . .. .......... . . . .... . . . . . ... .. . .... ....... . . . ........ . . . . . .. .. . . . . . .. . . . . . . . . . . . . . . . .. . ... . ... . . . . . . . . ... . . .. . .... . .. .. . . . . . . . . . . . . .... . .. . .. . . . . . . . .. ... . . . . ... . .... . .. . . .. . . . . .. . . . . . .. . . .... .. . . ... . .. ... . . . . . . .. .. .. . . . .. . . . . . . . . ... . . .. .. .. . . . . . . . .. . . .. . . . ... . . .. . . . . . .. .. . . . . . .
lowQualScore : 999 7 000 7 44444444444 11 7 11 7 7 7 7 7 33333 1 6666 2222 55 7 00 7 7 7 222222 22 2 7 33 5 2222 7 7 2222 77777777 22 33 7 7 00000 7 000 7 8 0 8 0 00 0 0 8 88 0 6666666666666 444 0 2 7 777 77 22 7 88 7 7 33 7 22 8 0 0 0 8 6 2 8888 0 0 8888 0 2 0 888 00000 22222 2 88 88 88 0 55 2 2222 2 0 0 2 00 7 33 3 7 3 777 333 777 7 7 333 00 00 33 33 3 777777 0 77 000 3 77 3 3 3 00000 3 3 55 0000000000 5 0 5 0000 5 3 3 3 7 333 00 3 7777 7777777 0 0 7 33333333 3 3 3 7 3 33 33 3 3 3 3 3 33 0 0 0 5 0 5 0 0 5 0 0 5 5 5 0 00 5 777 3 000 3 3 3 3 3 3 7 7 333 7 3 33 3 3333 0 00 00 0 5 0 5 0 5 5 5 5 0 5 0 5555 0 00 5 55 0 5 5 5 0 5 0 00 555 5 5 5 0 000 0 0000 0 00 0 0 00 0 5 5 5 00 0 5 5 5 0 00 5 5 5555 55 0 5 000 5 55 555 5 5 0 5 5 0 00 00 55 0 5 5 00 0 0 0 0 0 0 0 5 555 0 0 55 00 00 0 5 5 0 0 0 0 00 5 0 00 5 0 5 000 0 0 55 0 0 0 0 5 00 55 5 0 0 0 0 0
consensus : CTGTTN--AAATATATTTTTA---ACA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA---ACGTTT----CT--AG-GTAAGGC-A-TTTCTT-AG------CT--TAGGA-ATAAG-GATTT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-AT-C---TA------CCACT-TTCTATTGCCAAGCT-TATGAT-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCGGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGC-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTC-TTTTCATTT--AAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATATTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
Reference ( family-1830 ) : CTGTTN--AAATATATTTTTA---ACA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA---ACGTTT----CT--AG-GTAAGGC-A-TTTCTT-AG------CT--TAGGA-ATAAG-GATTT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-AT-C---TA------CCACT-TTCTATTGCCAAGCT-TATGAT-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCGGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGC-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTC-TTTTCATTT--AAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATATTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
gi|1 : CTGTTGTAAAATATATTTTTA---AAA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAC---ACATTT----CT--AG-GTAAGGC-A-TTTCTTAAG------CT--TAGGA-AT-AG-GA-TT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CAGCT--TCA-GTC-ACA-CCA----GTATT-GC--ACAT-TTTGCAA-CATCTTTG-ATTCACCT-GAAGTGG-ATT-AT-AT-C---TA------CCACT-TTCTATTGC--AACT-TATGAA-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCAGA-T--TTTTTCT-GAG--TAAATCAACATAATG-GACTTC-TTTTACTTGTGGATAATTTTTTT---ATAAAAATT-CAAG-T--TTTTTTGAAACCA-AAA-A-TGTTTGATG-----ATTGCT---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTG-TGAA-T----GAATTTTTAT-ATTTTGTAA-TGGTATG-AAAATCCGA--GATTATC-TAGAAT-AGAAAATAAATTTT---CAT---AGT-CCAAGC---ATTGTGGGTCAC-TGTGGATTGATAAAATGTTTA--AAAGCCAAGAATCGGGACGTCATTAAGATGAAATTC-CAA-TATTT-AATACTCGAG-AATG-AAATTTTTTGGAC-CAAA-GTGGCAGTC--TTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAG-TGC----ACTCGAG-GATTTC-TTTAATAAATTTGAGGCGAAAAATTTTTCCTATG-TT-GAAAAACATCTGTT-GGAT-GAGAAGATCCACCTCCCCATAATTT-CAACTACAATACAAGAAGAACTGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGGTATATATCCATTACCAATAATTCTTTTTCATTT--AAAAC-ATGC-TTTTCGTGGCTTTTTC-CAATAA-GC-ACAGCTGTTGATAAGTTAAACCTTCCATTGCA-TTCAACATAA-ACCTAA-ATAA-CAGTAATTATTGGTAGGCAATTTGTTATTATATTCGCATTAATT-GTAACATTCATTCC-C-TGAGG-TTGCCATTCTGAGTTA-AATATCAAAACTTTTGGATTTA-TCTACATTGACCT---GCAGTTTCCAGT-TTGA--GC-ATATTGCTTCT-GAGAATATTCAAAGGCTGTTTTGTAAAC-CATGTTTCTTTAGAAAAGATTACAATTTC-TCAAGCATACATAA-CAGACAGTTTAC-ATGAACATTGTTTACTTTGTACAAGGATCCCAAATTTTTTTCCATGTTTCAAGTCCATTGACAATTAACCAT-CAATAAAT-TATTTGAAGAGT-TGGGGCTT-AAAACATGCCCT--TTTTGACACGCCAC-TTCAAGAATTGAATA-CATCACTTA-AACCATCAGAAAAATTTTATTCTACTCGTTG----CCTTACTATACCATGG--AAAATAGAAT-ATAAAACAGTTT--TTGGAAAATATCAGAT-TC-AAGGAG-TTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAATGAGGCC-GCA-TATACTTTTTTG-TTTTTGTACTGTGAATTATTGTGTTGATA-A--GAGAATAAGTGGTC--TGAGTGTCCTACAGTT---TCTTTGAAA-CCAAG--TTGGTTTTTTTC-ACTTATTAATTGAC-ATAGATGTTTACAAATTCTATAAGTCTAGTATGGGA--TATT-CTATTGAAAAGTTTTCCTTAGGTTGA-GGTAAATTGCAT-ATACTCT-TAGTTGTTT-AGG-GGTCAAGCCTATTGACCAAGAT---TTAATACAGCAATTACTAAA--TAACTTTCAATAGTCCAACTTCTTGGGAAT-ACCCAGAATTGAGTATAAAGT-GAACAATTTTTCCAAAGCTTTCAACATTGGCATATCCCCCA-TTTTCA-CATTTCATTTGAATAT-CATAATCATGGAGGA-CTCTTCCATTTTTTCACGAACATAAGGCAGTCTT--TTTCATTAATGGTCATGTTCTGGTTCA--GGAAATG--TTA-GTTG-AGTT-TATCCGTTTCAAACCAT
gi|10 : -TATG-T-GCAC--TC--AATCGAATTTT-ACTAAGAGGGGATCTCT-CGGA-TC-TTTTTCT-GAA--CGAATCAACAT-ATG-GACTTC-TTTTTCTAATGTTTAATTTTTTTTTCAT-AAAATT-CAAGGT--TTTTTT-AA--CATAAG-G-TTTTTGATA-----ATTGCT---TCT-GAGTGCA--CTGATCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAAATTTTAT-ATTTTGTAA-TGTT
gi|14 : GAG-GATTTCTTT-AATAAATTTGAAGTGAAA---TTTTTCTATGTTT-G--AAACATCTTT--GCA--GAG-AGATCCAC-TCCCCAT-TATT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAG--TTTTTCTAAAAGTTTACA-TGG-AT-TATCCAATACCAATAATTC-TTTTCATTT--AAAACg
gi|15 : ATATTGCCATTAA-TAGTAA-ATTCATTCC-CTTGAGGTTTGCCATTT-GAGTTA-AATATCAAAACTTT-GGATTTATT-TACATCGACTT---GCAGTTTCCAGT-TTGA--ACAATAT
gi|16 : TTT----CTTAAG-GTAAGGC-A-TTTCT---GCTCATTCT--TACGA-TTAA--GATTT----ACA-ATTG----GAAAAGAAAATGAT---TTCT-CACCTGCTCAGATCGACA-CAAG---GTGTG-AC--ACAT-T
gi|2 : TACTTAT--ATAATTTTCT----AT-AAAATTTCAAG-TCGTTTTTT-TAACCA-AAAGA-TTTTGGGTGTATGAATTGACGGATCCTGAGTGCAAGTTGGTCAATTTCATTCTTTGTTTTATAGTTTTGGTAA-AAGGGGT-GAATTTTTTGAATTT--AT-ATTTTGTAAATGTTTTGGAAAATCCAAAGGATTATCTGA-AATAGGAAAAT----TTT---CAT-GTAGTCC-AAGC---ATTTC-GGTCA-TTGTGGATTGATAAA--GTTTAGAAAAG-CAAA------GACGT-AT-AAGATG-A-TTC-CA--TATCTGAATACTCGAGAA-TGTAAA-ATTTTGGACACAAAAGTGGCAGTCTATTACTTG----------CTGTTAGACA-CCAGCATTGGATGTTTTTG-CAGTTGCAGGGACCGGAGAGATTTCTTTTAATAAATTTGAAGTGAAA---TTT--CTATGTTTTG--AAACATCTTTTTGGATTGAAGAGATCAACTTCCC-AT-ATGTGC-ACTACAATA-A-GAAGA--TGGTAGTACCAATGTAATATCAAAAAGTTTTTTCTAAAAGTTTACACTGG-ATAT-TCAAATACCAATAATTC-TTTTCATTTGTAAAACGATGCGTTTTC-TGGCTTTTTCTCAATAAGGCAACAGCTGTTACTAAGTTACACTTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGT-ATT-TTGTT-CACAATTTG-TATTATATTGCCATTAA-T-GTAA-ATTCATTCCATTTGAGGTTTGGCCTTTTGAGTTAGAATATC-AAACTTTTGGATTTATTCTACATTGACCTTGAG-AGTTTCCAGTCTTGAACACAATA----TTCTGGAGAATATC--AAGGC--TTTTGTAAACGCACTTTGCTTTCAGAAAGATTACAATATCATC-AGCA-GTATAATCAGACAGTTTACGATGAACATTGTTTAC-TTGTACAGGGATCACA----TTCTTCCAT-TTTCA--TCTATTGAC-AT--ACCATCCAATAAATATA-TTGAAGAGTATCGGGCTTAAAAACATCCCCTTGTTTTGAC---CCACATTC-AGAATTGAATATCATCACTTACAACCATATCAAAATTTTTATTCTACTTGTTGTTCTTTTTACTATA-CATGGGAAAAATAGAATGATTAAACAGTTTTGTTGAGAAATATTAGATGTCAAAGGAGATTTAT-AAATAAACCCAATCTCCAGACAGTG--TCAATGCTTTCCTAAGATCAAGTGAAGCCGGCATTAT-CTTTTTTGTTTTTTGTAATGGCAATTA-TATGTTCGTATACTGAGAATAAGTGGTCTTTGA-TGTCCT-CAGTTTTGTCTTTGAAATCCGAATTTTGG---TTTTCAACTTATTAA-TGACGATAGA-GTTTAC-AATTCAAGTAGTCTAGTTGGGGAATTATTCCTATTGAAAAGTTTTTCCTAGGTTGATGGT-AATTGACTGATACTCTGTTGTTGTTTGAGGCGTTCAAGCCTATT-ACC-AGATTTATTAACAAAGCAAGTACTAAAATTAACTTT--AT--TCCAACTTTTTGGGAATCACCAGGAATTGAGT-TTAAGTGGAACAATTTTT-CAGAGGTTTCAACATATGCATATCCCCCATTTTTCAGCATTTCATT--GATATACATATCCATGGAAGATCTTTCCCATTTTT---CGAACTTTAAGCAGCCTTTATTTGATAATTGGTAATG-TCTGGTTCAAGGAAAATGATTTATGTTGCAGCTGTTTCTGTTCAAAAACAT
gi|3 : ttcaCTGTTC--AAATATATTTT-A---ACAATGTA---A-------CTTTCATGTGTTCA-A--CT-AATAT-TTCTCTG-TGTTTATGT-----TATAAA----CATTT----TT--AA-GTAGGGCCA-TTTCTT-AG------CT--TAG-A-ATAAG-GAAT-----ACA-A-TG----AAAAAAGGAATGAAATTT--T-CATCT--TCA--TC-ACAACCAG----TATT-GC-A-CAT-ATTGCAA-CATCTTTG-ATTCAAAT-GAGGTGGAATTTATTAT-C---TA------CCACT-T-CTATTGCCAA-CTATATGA--GCAC--TC--AATCTAATTTTTGCTAAGAGAGGATCTCT-CGCA-TT-TTTTTCT-GAG--TAA-TCAACAT-ATG-GACTTC-TTT-ACTTGTGTATA--TTTTTT---AT-AAAATT-CAAG-T--TTTTTG-AAACCA-AAA-ATTTTTTGATG-----ATTG-C---TCTTGAGTGCA--CTGGTCAAAT--TTTCTTTGTTTTATG--TTTGGTAATAAGGTGTTGAATTG---GAATTTTTATAATTTTGTAA-TG-TAT--AAAATCCAA--GATTATCTTAGAATAAGAAAAT--ATTTTTCCCATAA-AGTCCCAAGCCCAATTGT-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-AGACGTTATT-AGATG--ATTCGCAATTAATT-GATAATCGAGAAATG---A-ATTTTGGAC-CAAA-GTGg
gi|4 : tacaaatacaaatatttattggcacacacaaacacaattacaaacattgcaaaaggcccattgaacatcatttggcagtgttaatttacatttttttaatgtaatagcatgttgaatttctatattcacaacacgtcctttgataaatttcctgtaatttttaaaacttttgtgtaacatcaCTGTTC--AAATATATTTTTA---ACA-TGTT---A-------CTTTCAT--GT-CAGAGACTGAATATATTCTCTGCTGTT-ATGT-----TATAAA----CATTTTTCTCT--AGTGTA-GGC-ACTTTCTT-AG------CT--ATGTA-ATA-G-GATTT----ACACA-TG----AAAAAGGAAATGAA---T--TTCATCT--TCA-ATC-ACA-CCAG----TATTTGC-A-CATATTTGCAAACATCTTTGCATTTCAATAGAAGTGGAATT-AT-ATGC---TGAGCTCTCCACTCTTCTATTGCCAA-CT-TATGATAGCAC--TC--AATCTAATTTT-GCTAAGAGAGGATCTC-TCAGATTT-TTTTTCTGGAG--TAAATCAACAT-ATGCGACTTCTTTTTACTTGTGTATA
gi|5 : atacaaatttactaaattatttattgcgtccacaaacacaatacaataatggcaaagaccattatgaacatattttggcaagtcttgtataatttacaatttttttttattttgtacaaatagcattgttgatttctatatcaaaacagtctttgcataattcactgtaattttttaagactttgtagtcaaatccaTGTTG--AAATATATTTTTC---ATC-TGTA---A-------CTTTTAT-TGT-CC-AGATT-AATAT-TTCTCTG-TGTT-ATGT-----TA-AAA---ATGTTT----CTA-AG-GT-AGGC-A-TTTCTT-AG------CT--TAGAATATAAGAGATTTGCAAACA-A-CGAAAAAAAAAAAAAATGAAT--T--T-CATCC--TCA-ATC-ACA-CCAGTACGTATT-GCAAACAT-TT--CAA-CATCTTTA-ATTC-AAT-GATATAGAATT-AC-ATACCTATA------CCACT-TTCTACTG-CAAGTT-TATG-T-GCA--CTC--AATCTAATTTT-ACTAAGAGAGGATCTC-TCAGA-TC-TTTTTCT-GAGAATAAA
gi|6 : aaaacaaatacaactatttattggcacaaacacaattacaataatttgtaaagacccatgggacatcattaaacaatatacatattttatgtaatcgcatgtccctgactcctgtacttattcaaaacagtctccaataaatttcacagaaatttttgatactttctcaaatctgtatatcaaCTGTTC--AAATATATTTTAA---ACA-TGTTTGTA-----A-CTTT-----GT-CA-AGACT-ATTAT-TTTTCTG-TGTT-ATGTTAGCCTATAAATAGATGTTT----CTG-AG-GT-AGGC-A-TTTCTT-AG------CTTCTAAGA-ATAA--AATTT----ACA-A-TG----AAAAAGAAAAT------T--C-CATCT--TCA-ATC-ACA-CCA----GTATT-ACGAACA---TTACAA-C--------------AT-GATGTGGAAT---T-AT-C----------------------TTG-CAAGTT-TATG-T-GCACTCTTGAAATCTAATTTT-ACTGAGAGAGGATCTC-TCAGA-TCTTTTTTCT-GAG--T
gi|7 : ataagatacaaaagttggcgcaaacacaatttaattggcaaaggccctttgaatgtttacattattttttatgcaatttaaatttcatcgaaatttttaaaactttgtatacatcaTGTCA--AAATATATTTTTAGTAACA-TGTA---A-----C-TTTTCAT-TAT-C---------ATAC-TTTGGTG-TG-C-ATGT-----TACA
gi|8 : ctatacacatagcaataactatatttatttggcacaacgatacattaacaataattggctaaaagtgccgcattgaacatagcatttggcagtgttaatttacatttttatgagtagatgagtcatgtttgatctttctataattcaaaacaagtctttgataaattcatgtaaatataattataaagactttgtagtaaatccacttgcaCTGTTT--AAATATATTTTTA---GCA-TGTA---ACTTTCATCTTTCAT-TGT-CA-AGACT-AATAT-TTTTCTG-TGTT-ATTT-----TAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATATAAATACAAATATTTATTGGCACAAACACAATTACAATAATTGACAAAGGCCCATTGAACATCATTTGGCAGTGTTTACATATTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAACTTTGTGTATATCACTGTTCAAATATATGTAAATATAACTTCAGAATCATCTTATTTAATAGTATGAATAGTGT
Unaligned ( gi|11 ): CACAAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATATATTTCAAGTGCTGTAATTTTTAAGACTTTGTGTAAATCACTGCAGCCAGTTTTCTGATACTTCTTTAAAATTATTTTCATCTCAATATTGAAGAGTTTC
Unaligned ( gi|12 ): TCTAAATATAAATCGTACAAAAACCAATACAAATATTATTGGCACAACACATAATTCAATAATTGGCAAAGGCCCATTGAACATCATGGCAGTGTTTCATTTGTTTATGTATAACATATTTTCTATATTTCCAAAAGCGAGGTGGCGGTTGATTATAGATGTTTCACTGTAACTAGTTAAAGACTTTGCGAAATGATCACGGTTCAGAATATT
Unaligned ( gi|13 ): AATATACAAATACAAATATTTATTGGCACAAACACAATTACAATAATAATTTAATTGGCAAAAGCCCATTGAACGTCATTTGGCAGTGTTTACATTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAATTTTGATATATCACTGTTCAAATATATTTTTAA
Unaligned ( gi|17 ): TACCACAGCACTAACATTACTTTTTATACAAATACAAATACAATACAAATATTAATTGGCAAAGGCCCATTGAACATCATTAGACAGAGTTTACATATTTTT
Unaligned ( gi|18 ): AAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTATGTAATAGCATGTTGATTTCTAT
Alignments
lowQualScore : 111 33333333333 11111 2222 1111 22 111111 11 1111 1111 11111111 22222 222 11 4444444444444 1 1 222 22 22 11 1 1 1 2222 1 1 1111 1 1 111 22222 22222 11 11 11 1 3333 1 1 22 11 222 222 333 222 11 11 11 11 1 222222 1 11 222 1 22 1 22222 1 1 11 4444444444 1 1 1 2222 1 222 11 2222 2222222 1 1 11111111 1 1 11 11 1 1 1 11 1 1 1 1 1 1 1 1 1 1 1 1 11 1 111 1 111 1 222 1 11 1111 1 11 11 1 1 1 1 1 1 1 2222 1 11 1 11 1 1 1 1 1 11 222 1 1 1 1 2222 1 11 1 11 1 1 1 1 11 1 1 1 1 1 2222 11 1 1 222 1 11 222 1 1 1 1 1 11 1 1 1 1 1 1 1 1 1 222 11 11 11 1 1 1 1 1 1 11 1 1 222 11 1 11 11 1 1 1
lowQualScore : 888 1 000 5 66666666666 77 5 77 0 5 5 5 5 44444 0 4444 4444 22 6 99 6 6 6 999999 99 5 6 33 3 4444 6 6 4444 88888888 99 88 6 6 55555 6 888 6 0 8 0 8 11 8 1 0 88 8 2222222222222 999 0 3 6 555 11 99 6 22 0 6 00 6 99 0 0 0 0 0 0 3 0000 0 0 4444 0 3 0 444 55555 44444 3 33 33 33 0 66 3 1111 3 0 0 9 00 0 88 7 6 7 555 333 888 6 6 333 44 44 88 88 3 000000 2 44 888 3 00 3 7 7 44444 3 3 88 1111111111 5 5 5 3333 2 3 7 7 0 333 11 7 1111 0000000 2 2 6 99999999 3 7 7 0 3 88 00 3 3 7 7 3 88 5 5 5 5 5 5 1 1 5 5 5 5 5 5 1 88 5 777 3 666 7 7 3 7 7 7 6 0 333 6 3 88 7 5555 5 88 88 5 2 1 2 1 5 5 5 5 5 5 1 4444 5 88 5 88 5 5 5 5 1 5 1 88 000 5 5 5 5 333 1 4444 5 88 5 1 88 5 5 5 5 88 5 5 5 5 1 22 5 2 4444 88 5 5 111 5 88 111 5 5 5 5 5 1 22 22 88 5 5 5 22 5 5 1 5 5 1 5 5 111 1 1 88 88 88 5 2 5 1 5 5 1 22 5 5 88 5 1 5 111 1 1 88 1 1 1 1 5 88 88 5 5 5 1 1 1
lowQualScore : ... . ... . ........... .. . .. . . . . . ..... . .... .... .. . .. . . . ...... .. . . .. . .... . . .... ........ .. .. . . ..... . ... . . . . . .. . . . .. . ............. ... . . . ... .. .. . .. . . .. . .. . . . . . . . .... . . .... . . . ... ..... ..... . .. .. .. . .. . .... . . . . .. . .. . . . ... ... ... . . ... .. .. .. .. . ...... . .. ... . .. . . . ..... . . .. .......... . . . .... . . . . . ... .. . .... ....... . . . ........ . . . . . .. .. . . . . . .. . . . . . . . . . . . . . . . .. . ... . ... . . . . . . . . ... . . .. . .... . .. .. . . . . . . . . . . . . .... . .. . .. . . . . . . . .. ... . . . . ... . .... . .. . . .. . . . . .. . . . . . .. . . .... .. . . ... . .. ... . . . . . . .. .. .. . . . .. . . . . . . . . ... . . .. .. .. . . . . . . . .. . . .. . . . ... . . .. . . . . . .. .. . . . . . .
lowQualScore : 999 7 000 7 44444444444 11 7 11 7 7 7 7 7 33333 1 6666 2222 55 7 00 7 7 7 222222 22 2 7 33 5 2222 7 7 2222 77777777 22 33 7 7 00000 7 000 7 8 0 8 0 00 0 0 8 88 0 6666666666666 444 0 2 7 777 77 22 7 88 7 7 33 7 22 8 0 0 0 8 6 2 8888 0 0 8888 0 2 0 888 00000 22222 2 88 88 88 0 55 2 2222 2 0 0 2 00 7 33 3 7 3 777 333 777 7 7 333 00 00 33 33 3 777777 0 77 000 3 77 3 3 3 00000 3 3 55 0000000000 5 0 5 0000 5 3 3 3 7 333 00 3 7777 7777777 0 0 7 33333333 3 3 3 7 3 33 33 3 3 3 3 3 33 0 0 0 5 0 5 0 0 5 0 0 5 5 5 0 00 5 777 3 000 3 3 3 3 3 3 7 7 333 7 3 33 3 3333 0 00 00 0 5 0 5 0 5 5 5 5 0 5 0 5555 0 00 5 55 0 5 5 5 0 5 0 00 555 5 5 5 0 000 0 0000 0 00 0 0 00 0 5 5 5 00 0 5 5 5 0 00 5 5 5555 55 0 5 000 5 55 555 5 5 0 5 5 0 00 00 55 0 5 5 00 0 0 0 0 0 0 0 5 555 0 0 55 00 00 0 5 5 0 0 0 0 00 5 0 00 5 0 5 000 0 0 55 0 0 0 0 5 00 55 5 0 0 0 0 0
consensus : CTGTTN--AAATATATTTTTA---ACA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA---ACGTTT----CT--AG-GTAAGGC-A-TTTCTT-AG------CT--TAGGA-ATAAG-GATTT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-AT-C---TA------CCACT-TTCTATTGCCAAGCT-TATGAT-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCGGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGC-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTC-TTTTCATTT--AAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATATTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
Reference ( family-1830 ) : CTGTTN--AAATATATTTTTA---ACA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA---ACGTTT----CT--AG-GTAAGGC-A-TTTCTT-AG------CT--TAGGA-ATAAG-GATTT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-AT-C---TA------CCACT-TTCTATTGCCAAGCT-TATGAT-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCGGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGC-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTC-TTTTCATTT--AAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATATTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
gi|1 : CTGTTGTAAAATATATTTTTA---AAA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAC---ACATTT----CT--AG-GTAAGGC-A-TTTCTTAAG------CT--TAGGA-AT-AG-GA-TT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CAGCT--TCA-GTC-ACA-CCA----GTATT-GC--ACAT-TTTGCAA-CATCTTTG-ATTCACCT-GAAGTGG-ATT-AT-AT-C---TA------CCACT-TTCTATTGC--AACT-TATGAA-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCAGA-T--TTTTTCT-GAG--TAAATCAACATAATG-GACTTC-TTTTACTTGTGGATAATTTTTTT---ATAAAAATT-CAAG-T--TTTTTTGAAACCA-AAA-A-TGTTTGATG-----ATTGCT---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTG-TGAA-T----GAATTTTTAT-ATTTTGTAA-TGGTATG-AAAATCCGA--GATTATC-TAGAAT-AGAAAATAAATTTT---CAT---AGT-CCAAGC---ATTGTGGGTCAC-TGTGGATTGATAAAATGTTTA--AAAGCCAAGAATCGGGACGTCATTAAGATGAAATTC-CAA-TATTT-AATACTCGAG-AATG-AAATTTTTTGGAC-CAAA-GTGGCAGTC--TTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAG-TGC----ACTCGAG-GATTTC-TTTAATAAATTTGAGGCGAAAAATTTTTCCTATG-TT-GAAAAACATCTGTT-GGAT-GAGAAGATCCACCTCCCCATAATTT-CAACTACAATACAAGAAGAACTGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGGTATATATCCATTACCAATAATTCTTTTTCATTT--AAAAC-ATGC-TTTTCGTGGCTTTTTC-CAATAA-GC-ACAGCTGTTGATAAGTTAAACCTTCCATTGCA-TTCAACATAA-ACCTAA-ATAA-CAGTAATTATTGGTAGGCAATTTGTTATTATATTCGCATTAATT-GTAACATTCATTCC-C-TGAGG-TTGCCATTCTGAGTTA-AATATCAAAACTTTTGGATTTA-TCTACATTGACCT---GCAGTTTCCAGT-TTGA--GC-ATATTGCTTCT-GAGAATATTCAAAGGCTGTTTTGTAAAC-CATGTTTCTTTAGAAAAGATTACAATTTC-TCAAGCATACATAA-CAGACAGTTTAC-ATGAACATTGTTTACTTTGTACAAGGATCCCAAATTTTTTTCCATGTTTCAAGTCCATTGACAATTAACCAT-CAATAAAT-TATTTGAAGAGT-TGGGGCTT-AAAACATGCCCT--TTTTGACACGCCAC-TTCAAGAATTGAATA-CATCACTTA-AACCATCAGAAAAATTTTATTCTACTCGTTG----CCTTACTATACCATGG--AAAATAGAAT-ATAAAACAGTTT--TTGGAAAATATCAGAT-TC-AAGGAG-TTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAATGAGGCC-GCA-TATACTTTTTTG-TTTTTGTACTGTGAATTATTGTGTTGATA-A--GAGAATAAGTGGTC--TGAGTGTCCTACAGTT---TCTTTGAAA-CCAAG--TTGGTTTTTTTC-ACTTATTAATTGAC-ATAGATGTTTACAAATTCTATAAGTCTAGTATGGGA--TATT-CTATTGAAAAGTTTTCCTTAGGTTGA-GGTAAATTGCAT-ATACTCT-TAGTTGTTT-AGG-GGTCAAGCCTATTGACCAAGAT---TTAATACAGCAATTACTAAA--TAACTTTCAATAGTCCAACTTCTTGGGAAT-ACCCAGAATTGAGTATAAAGT-GAACAATTTTTCCAAAGCTTTCAACATTGGCATATCCCCCA-TTTTCA-CATTTCATTTGAATAT-CATAATCATGGAGGA-CTCTTCCATTTTTTCACGAACATAAGGCAGTCTT--TTTCATTAATGGTCATGTTCTGGTTCA--GGAAATG--TTA-GTTG-AGTT-TATCCGTTTCAAACCAT
gi|10 : -TATG-T-GCAC--TC--AATCGAATTTT-ACTAAGAGGGGATCTCT-CGGA-TC-TTTTTCT-GAA--CGAATCAACAT-ATG-GACTTC-TTTTTCTAATGTTTAATTTTTTTTTCAT-AAAATT-CAAGGT--TTTTTT-AA--CATAAG-G-TTTTTGATA-----ATTGCT---TCT-GAGTGCA--CTGATCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAAATTTTAT-ATTTTGTAA-TGTT
gi|14 : GAG-GATTTCTTT-AATAAATTTGAAGTGAAA---TTTTTCTATGTTT-G--AAACATCTTT--GCA--GAG-AGATCCAC-TCCCCAT-TATT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAG--TTTTTCTAAAAGTTTACA-TGG-AT-TATCCAATACCAATAATTC-TTTTCATTT--AAAACg
gi|15 : ATATTGCCATTAA-TAGTAA-ATTCATTCC-CTTGAGGTTTGCCATTT-GAGTTA-AATATCAAAACTTT-GGATTTATT-TACATCGACTT---GCAGTTTCCAGT-TTGA--ACAATAT
gi|16 : TTT----CTTAAG-GTAAGGC-A-TTTCT---GCTCATTCT--TACGA-TTAA--GATTT----ACA-ATTG----GAAAAGAAAATGAT---TTCT-CACCTGCTCAGATCGACA-CAAG---GTGTG-AC--ACAT-T
gi|2 : TACTTAT--ATAATTTTCT----AT-AAAATTTCAAG-TCGTTTTTT-TAACCA-AAAGA-TTTTGGGTGTATGAATTGACGGATCCTGAGTGCAAGTTGGTCAATTTCATTCTTTGTTTTATAGTTTTGGTAA-AAGGGGT-GAATTTTTTGAATTT--AT-ATTTTGTAAATGTTTTGGAAAATCCAAAGGATTATCTGA-AATAGGAAAAT----TTT---CAT-GTAGTCC-AAGC---ATTTC-GGTCA-TTGTGGATTGATAAA--GTTTAGAAAAG-CAAA------GACGT-AT-AAGATG-A-TTC-CA--TATCTGAATACTCGAGAA-TGTAAA-ATTTTGGACACAAAAGTGGCAGTCTATTACTTG----------CTGTTAGACA-CCAGCATTGGATGTTTTTG-CAGTTGCAGGGACCGGAGAGATTTCTTTTAATAAATTTGAAGTGAAA---TTT--CTATGTTTTG--AAACATCTTTTTGGATTGAAGAGATCAACTTCCC-AT-ATGTGC-ACTACAATA-A-GAAGA--TGGTAGTACCAATGTAATATCAAAAAGTTTTTTCTAAAAGTTTACACTGG-ATAT-TCAAATACCAATAATTC-TTTTCATTTGTAAAACGATGCGTTTTC-TGGCTTTTTCTCAATAAGGCAACAGCTGTTACTAAGTTACACTTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGT-ATT-TTGTT-CACAATTTG-TATTATATTGCCATTAA-T-GTAA-ATTCATTCCATTTGAGGTTTGGCCTTTTGAGTTAGAATATC-AAACTTTTGGATTTATTCTACATTGACCTTGAG-AGTTTCCAGTCTTGAACACAATA----TTCTGGAGAATATC--AAGGC--TTTTGTAAACGCACTTTGCTTTCAGAAAGATTACAATATCATC-AGCA-GTATAATCAGACAGTTTACGATGAACATTGTTTAC-TTGTACAGGGATCACA----TTCTTCCAT-TTTCA--TCTATTGAC-AT--ACCATCCAATAAATATA-TTGAAGAGTATCGGGCTTAAAAACATCCCCTTGTTTTGAC---CCACATTC-AGAATTGAATATCATCACTTACAACCATATCAAAATTTTTATTCTACTTGTTGTTCTTTTTACTATA-CATGGGAAAAATAGAATGATTAAACAGTTTTGTTGAGAAATATTAGATGTCAAAGGAGATTTAT-AAATAAACCCAATCTCCAGACAGTG--TCAATGCTTTCCTAAGATCAAGTGAAGCCGGCATTAT-CTTTTTTGTTTTTTGTAATGGCAATTA-TATGTTCGTATACTGAGAATAAGTGGTCTTTGA-TGTCCT-CAGTTTTGTCTTTGAAATCCGAATTTTGG---TTTTCAACTTATTAA-TGACGATAGA-GTTTAC-AATTCAAGTAGTCTAGTTGGGGAATTATTCCTATTGAAAAGTTTTTCCTAGGTTGATGGT-AATTGACTGATACTCTGTTGTTGTTTGAGGCGTTCAAGCCTATT-ACC-AGATTTATTAACAAAGCAAGTACTAAAATTAACTTT--AT--TCCAACTTTTTGGGAATCACCAGGAATTGAGT-TTAAGTGGAACAATTTTT-CAGAGGTTTCAACATATGCATATCCCCCATTTTTCAGCATTTCATT--GATATACATATCCATGGAAGATCTTTCCCATTTTT---CGAACTTTAAGCAGCCTTTATTTGATAATTGGTAATG-TCTGGTTCAAGGAAAATGATTTATGTTGCAGCTGTTTCTGTTCAAAAACAT
gi|3 : ttcaCTGTTC--AAATATATTTT-A---ACAATGTA---A-------CTTTCATGTGTTCA-A--CT-AATAT-TTCTCTG-TGTTTATGT-----TATAAA----CATTT----TT--AA-GTAGGGCCA-TTTCTT-AG------CT--TAG-A-ATAAG-GAAT-----ACA-A-TG----AAAAAAGGAATGAAATTT--T-CATCT--TCA--TC-ACAACCAG----TATT-GC-A-CAT-ATTGCAA-CATCTTTG-ATTCAAAT-GAGGTGGAATTTATTAT-C---TA------CCACT-T-CTATTGCCAA-CTATATGA--GCAC--TC--AATCTAATTTTTGCTAAGAGAGGATCTCT-CGCA-TT-TTTTTCT-GAG--TAA-TCAACAT-ATG-GACTTC-TTT-ACTTGTGTATA--TTTTTT---AT-AAAATT-CAAG-T--TTTTTG-AAACCA-AAA-ATTTTTTGATG-----ATTG-C---TCTTGAGTGCA--CTGGTCAAAT--TTTCTTTGTTTTATG--TTTGGTAATAAGGTGTTGAATTG---GAATTTTTATAATTTTGTAA-TG-TAT--AAAATCCAA--GATTATCTTAGAATAAGAAAAT--ATTTTTCCCATAA-AGTCCCAAGCCCAATTGT-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-AGACGTTATT-AGATG--ATTCGCAATTAATT-GATAATCGAGAAATG---A-ATTTTGGAC-CAAA-GTGg
gi|4 : tacaaatacaaatatttattggcacacacaaacacaattacaaacattgcaaaaggcccattgaacatcatttggcagtgttaatttacatttttttaatgtaatagcatgttgaatttctatattcacaacacgtcctttgataaatttcctgtaatttttaaaacttttgtgtaacatcaCTGTTC--AAATATATTTTTA---ACA-TGTT---A-------CTTTCAT--GT-CAGAGACTGAATATATTCTCTGCTGTT-ATGT-----TATAAA----CATTTTTCTCT--AGTGTA-GGC-ACTTTCTT-AG------CT--ATGTA-ATA-G-GATTT----ACACA-TG----AAAAAGGAAATGAA---T--TTCATCT--TCA-ATC-ACA-CCAG----TATTTGC-A-CATATTTGCAAACATCTTTGCATTTCAATAGAAGTGGAATT-AT-ATGC---TGAGCTCTCCACTCTTCTATTGCCAA-CT-TATGATAGCAC--TC--AATCTAATTTT-GCTAAGAGAGGATCTC-TCAGATTT-TTTTTCTGGAG--TAAATCAACAT-ATGCGACTTCTTTTTACTTGTGTATA
gi|5 : atacaaatttactaaattatttattgcgtccacaaacacaatacaataatggcaaagaccattatgaacatattttggcaagtcttgtataatttacaatttttttttattttgtacaaatagcattgttgatttctatatcaaaacagtctttgcataattcactgtaattttttaagactttgtagtcaaatccaTGTTG--AAATATATTTTTC---ATC-TGTA---A-------CTTTTAT-TGT-CC-AGATT-AATAT-TTCTCTG-TGTT-ATGT-----TA-AAA---ATGTTT----CTA-AG-GT-AGGC-A-TTTCTT-AG------CT--TAGAATATAAGAGATTTGCAAACA-A-CGAAAAAAAAAAAAAATGAAT--T--T-CATCC--TCA-ATC-ACA-CCAGTACGTATT-GCAAACAT-TT--CAA-CATCTTTA-ATTC-AAT-GATATAGAATT-AC-ATACCTATA------CCACT-TTCTACTG-CAAGTT-TATG-T-GCA--CTC--AATCTAATTTT-ACTAAGAGAGGATCTC-TCAGA-TC-TTTTTCT-GAGAATAAA
gi|6 : aaaacaaatacaactatttattggcacaaacacaattacaataatttgtaaagacccatgggacatcattaaacaatatacatattttatgtaatcgcatgtccctgactcctgtacttattcaaaacagtctccaataaatttcacagaaatttttgatactttctcaaatctgtatatcaaCTGTTC--AAATATATTTTAA---ACA-TGTTTGTA-----A-CTTT-----GT-CA-AGACT-ATTAT-TTTTCTG-TGTT-ATGTTAGCCTATAAATAGATGTTT----CTG-AG-GT-AGGC-A-TTTCTT-AG------CTTCTAAGA-ATAA--AATTT----ACA-A-TG----AAAAAGAAAAT------T--C-CATCT--TCA-ATC-ACA-CCA----GTATT-ACGAACA---TTACAA-C--------------AT-GATGTGGAAT---T-AT-C----------------------TTG-CAAGTT-TATG-T-GCACTCTTGAAATCTAATTTT-ACTGAGAGAGGATCTC-TCAGA-TCTTTTTTCT-GAG--T
gi|7 : ataagatacaaaagttggcgcaaacacaatttaattggcaaaggccctttgaatgtttacattattttttatgcaatttaaatttcatcgaaatttttaaaactttgtatacatcaTGTCA--AAATATATTTTTAGTAACA-TGTA---A-----C-TTTTCAT-TAT-C---------ATAC-TTTGGTG-TG-C-ATGT-----TACA
gi|8 : ctatacacatagcaataactatatttatttggcacaacgatacattaacaataattggctaaaagtgccgcattgaacatagcatttggcagtgttaatttacatttttatgagtagatgagtcatgtttgatctttctataattcaaaacaagtctttgataaattcatgtaaatataattataaagactttgtagtaaatccacttgcaCTGTTT--AAATATATTTTTA---GCA-TGTA---ACTTTCATCTTTCAT-TGT-CA-AGACT-AATAT-TTTTCTG-TGTT-ATTT-----TAT
blockSeqs : C T GTA A ACTTTCAT GT T AG G A C T TAGCC TAGA TTCT TA T AA C C . CTCATT TC G T GA T GCAA C T AAAA ATTTT GC GA G A GTACG T AAA A A C AA A G TT T GCTGAGCTCT CTT C G A ATA TC GA T T T CT G AA . C T A TTTC . T TCG . A T GA TATGA ACGGA T AG TC GT T TT T TTTT T A A T GG AG T G A A TCC GT C C CCA C CT . GA . AATCA T A A G AT G A A TAAA A A TA . . . T AGGG G A T T . TT T TG TTGGATT G T C ATGTGC . A A C GT GT C . A A . GT G G . T G A C C T C G T . . T C . TA . ATT T T G A T T C TGA C C AC A . G . . G T G C A A . . T G . A . . . . . C A . A C A C TG . A . T C ATC T TTCT . GA G T TG G A A . . G T . T A GC . C TACT TT . . TTG T TT . A . G . . A GT TG AT C T . AC G G T G C T . . TTA A G AT . . C A . T G . G AT T G . A T T . T T TA G A T A . AG AT T C G T A A
blockSeqs : C T . . TGTAA T . A . . . . . A . A . AG . . . . . T . G A . . . . TTCT . A . . GG . GAA . . . CA . A T . ACCTATA TT C G . T C . . T . C . . . . . A T . . GT . A . AT . CT T . . . . TT T G T . . T . . T . A . . AA C . . T T . . . . . T A . . . A . A . . . T . . . T G GCA . . . TATTC . . . . . . . . . . . . T . CT T . . . . T . . . . . A
blockSeqs : G A . . AC T . C . . . . . . . G . A . . . . . A . G T . . . . TTT . A . . G . A . . . A . T T . CTA T . . . A . . . T . T . . . . . . . . . T . . . G . C . . . . . T T . . . . .
blockSeqs : C T . . A T . A . . . . . . . . . A . . . . . G . . T . . . . TTT . A . . G . A . . . . . T . . C . . . . T . . . T . T . .
blockSeqs : A T . . A . . A . . . . . . . . A . . . . . . . . T . . . . TC . . . . G . A . . T . . . T . C . .
blockSeqs : T . . . A . . . . . . . .
blockSeqCons : C** AC********* **** G* A* G* TTT***** GCTG********* T** T** ** T* C*
originalCons : CTGTTN--AAATATATTTTTA---ACA-TGTA---A-----A-CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA---ACGTTT----CT--AG-GTAAGGC-A-TTTCTT-AG------CT--TAGGA-ATAAG-GATTT----ACA-A-TG----AAAAAGGAAATGAA---T--T-CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-AT-C---TA------CCACT-TTCTATTGCCAAGCT-TATGAT-GCAC-CTC--AATCTAATTTT-GCTAAGAGAGGATCTCTTCGGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGC-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTC-TTTTCATTT--AAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATATTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
finalCons : CTGTTC--AAATATATTTTTA---ACA-TGTAAC---------CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGT-----TATAAA----CGTTT----CTG-AG-GTA-GGC-A-TTTCTT-AG------CT--TAGGA-ATAAG-GATTT----ACA-A-TG----AAAAAGGAAATGAATTT-----CATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-ATGCTG---------CCACTT--CTATTGCCAAGCT-TATGT--GCAC--TC--AATCTAATTTT-GCTAAGAGAGGATCTCT-CGGA-TC-TTTTTCT-GAG--TAAATCAACAT-ATG-GACTTC-TTTTACTTGTGTATAATTTTTTT---AT-AAAATT-CAAG-T--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGC-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTC-TTTTCATTT--AAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATATTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATATAAATACAAATATTTATTGGCACAAACACAATTACAATAATTGACAAAGGCCCATTGAACATCATTTGGCAGTGTTTACATATTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAACTTTGTGTATATCACTGTTCAAATATATGTAAATATAACTTCAGAATCATCTTATTTAATAGTATGAATAGTGT
Unaligned ( gi|11 ): CACAAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATATATTTCAAGTGCTGTAATTTTTAAGACTTTGTGTAAATCACTGCAGCCAGTTTTCTGATACTTCTTTAAAATTATTTTCATCTCAATATTGAAGAGTTTC
Unaligned ( gi|12 ): TCTAAATATAAATCGTACAAAAACCAATACAAATATTATTGGCACAACACATAATTCAATAATTGGCAAAGGCCCATTGAACATCATGGCAGTGTTTCATTTGTTTATGTATAACATATTTTCTATATTTCCAAAAGCGAGGTGGCGGTTGATTATAGATGTTTCACTGTAACTAGTTAAAGACTTTGCGAAATGATCACGGTTCAGAATATT
Unaligned ( gi|13 ): AATATACAAATACAAATATTTATTGGCACAAACACAATTACAATAATAATTTAATTGGCAAAAGCCCATTGAACGTCATTTGGCAGTGTTTACATTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAATTTTGATATATCACTGTTCAAATATATTTTTAA
Unaligned ( gi|17 ): TACCACAGCACTAACATTACTTTTTATACAAATACAAATACAATACAAATATTAATTGGCAAAGGCCCATTGAACATCATTAGACAGAGTTTACATATTTTT
Unaligned ( gi|18 ): AAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTATGTAATAGCATGTTGATTTCTAT
Alignments
lowQualScore : 111 111 1111 2222222 222222222 1111 11 1 222222 1111 22222 1111 2222 222 11 5555555555555555 111111 1 1 111 1111 11 1 1 1 2222 1 1 1 11 1 1 111 22222 22222 11 11 11 1 3333 1 1 22 11 222 222 333 222 11 11 11 11 1 222222 1 11 222 1 22 1 22222 1 1 11 4444444444 1 1 1 2222 1 222 11 2222 2222222 1 1 11111111 1 1 11 11 1 1 1 11 1 1 1 1 1 1 1 1 1 1 1 1 11 1 111 1 111 1 222 1 11 1111 1 11 11 1 1 1 1 1 1 1 2222 1 11 1 11 1 1 1 1 1 11 222 1 1 1 1 2222 1 11 1 11 1 1 1 1 11 1 1 1 1 1 2222 11 1 1 222 1 11 222 1 1 1 1 1 11 1 1 1 1 1 1 1 1 1 222 11 11 11 1 1 1 1 1 1 11 1 1 222 11 1 11 11 1 1 1
lowQualScore : 000 1 000 5 2222 7777777 0 77 5 77 0 5 5 5 5 222222222 8 4444 55 3 99 6 6 888888 5 6 3333 11111 6 6 4444 99 88 99 88 6 6 6666 6 888 6 0 8 0 8 11 8 1 0 8 5555555555555555 888888 0 3 6 999 6 4444 6 6 0 6 00 6 99 0 0 0 0 0 0 3 0000 0 0 0 33 0 3 0 444 55555 44444 7 33 33 33 0 66 3 1111 3 0 0 9 00 0 88 7 6 7 555 333 888 6 6 333 44 44 88 88 3 000000 2 44 888 3 00 3 7 7 44444 3 3 88 1111111111 5 5 5 3333 2 3 7 7 0 333 11 7 1111 0000000 2 2 6 99999999 3 7 7 0 3 88 00 3 3 7 7 3 88 5 5 5 5 5 5 1 1 5 5 5 5 5 5 1 88 5 777 3 666 7 7 3 7 7 7 6 0 333 6 3 88 7 5555 5 88 88 5 2 1 2 1 5 5 5 5 5 5 1 4444 5 88 5 88 5 5 5 5 1 5 1 88 000 5 5 5 5 333 1 4444 5 88 5 1 88 5 5 5 5 88 5 5 5 5 1 22 5 2 4444 88 5 5 111 5 88 111 5 5 5 5 5 1 22 22 88 5 5 5 22 5 5 1 5 5 1 5 5 111 1 1 88 88 88 5 2 5 1 5 5 1 22 5 5 88 5 1 5 111 1 1 88 1 1 1 1 5 88 88 5 5 5 1 1 1
lowQualScore : ... . ... . .... ....... . .. . .. . . . . . ......... . .... .. . .. . . ...... . . .... ..... . . .... .. .. .. .. . . .... . ... . . . . . .. . . . . ................ ...... . . . ... . .... . . . . .. . .. . . . . . . . .... . . . .. . . . ... ..... ..... . .. .. .. . .. . .... . . . . .. . .. . . . ... ... ... . . ... .. .. .. .. . ...... . .. ... . .. . . . ..... . . .. .......... . . . .... . . . . . ... .. . .... ....... . . . ........ . . . . . .. .. . . . . . .. . . . . . . . . . . . . . . . .. . ... . ... . . . . . . . . ... . . .. . .... . .. .. . . . . . . . . . . . . .... . .. . .. . . . . . . . .. ... . . . . ... . .... . .. . . .. . . . . .. . . . . . .. . . .... .. . . ... . .. ... . . . . . . .. .. .. . . . .. . . . . . . . . ... . . .. .. .. . . . . . . . .. . . .. . . . ... . . .. . . . . . .. .. . . . . . .
lowQualScore : 999 7 000 7 1111 6666666 7 11 7 11 7 7 7 7 7 999999999 0 2222 77 3 22 7 7 333333 2 7 3333 55555 7 7 2222 22 33 22 33 7 7 7777 7 000 7 8 0 8 0 00 0 0 8 0 2222222222222222 666666 0 2 7 777 7 2222 7 7 7 7 33 7 22 8 0 0 0 8 6 2 8888 0 0 0 88 0 2 0 888 00000 22222 0 88 88 88 0 55 2 2222 2 0 0 2 00 7 33 3 7 3 777 333 777 7 7 333 00 00 33 33 3 777777 0 77 000 3 77 3 3 3 00000 3 3 55 0000000000 5 0 5 0000 5 3 3 3 7 333 00 3 7777 7777777 0 0 7 33333333 3 3 3 7 3 33 33 3 3 3 3 3 33 0 0 0 5 0 5 0 0 5 0 0 5 5 5 0 00 5 777 3 000 3 3 3 3 3 3 7 7 333 7 3 33 3 3333 0 00 00 0 5 0 5 0 5 5 5 5 0 5 0 5555 0 00 5 55 0 5 5 5 0 5 0 00 555 5 5 5 0 000 0 0000 0 00 0 0 00 0 5 5 5 00 0 5 5 5 0 00 5 5 5555 55 0 5 000 5 55 555 5 5 0 5 5 0 00 00 55 0 5 5 00 0 0 0 0 0 0 0 5 555 0 0 55 00 00 0 5 5 0 0 0 0 00 5 0 00 5 0 5 000 0 0 55 0 0 0 0 5 00 55 5 0 0 0 0 0
consensus : CTGTTN--AAATATATTTTTA---ACA-TGT----AAC------TTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGTTA---------TAA-ACGTTT----CT-AAGGTA-GG--CA-TTTCTTA-GCT------TAGGA-ATAAG-GATTT----ACA-A-TG----AAAAAGGAAATGAA--TT-TCATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-AT-C---TA------CCAC-T--T-CTATTGCCAAGCT-TATG-T-GCAC-TC----AATCTAATTTT-GCTAAGAGAGGATCTCT-CGGA-TC-TTTTTCT-GAG--TAAATCAACATA-TG-GACTTC-TTTTACTTGTGTATAATTTTTTT---ATAAAA-TT-CAA-GT--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGC-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTC-TTTTCATTT--AAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATATTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
Reference ( family-1830 ) : CTGTTC--AAATATATTTTTA---ACA-TGT----AAC------CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGTTA---------TAA-ACGTTT----CT-GAGGTA-GG--CA-TTTCTTA-GCT------TAGGA-ATAAG-GATTT----ACA-A-TG----AAAAAGGAAATGAA--TT-TCATCT--TCA-ATC-ACA-CCAG---GTATT-GC-AACAT-TTTGCAA-CATCTTTG-ATTCAAAT-GANGTGGAATT-AT-ATGC---TG------CCAC-T--T-CTATTGCCAAGCT-TATG-T-GCAC-TC----AATCTAATTTT-GCTAAGAGAGGATCTCT-CGGA-TC-TTTTTCT-GAG--TAAATCAACATA-TG-GACTTC-TTTTACTTGTGTATAATTTTTTT---ATAAAA-TT-CAA-GT--TTTTTT-AAACCA-AAA-A-TTTTTGATG-----ATTGCC---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAATTTTTAT-ATTTTGTAA-TGTTATG-AAAATCCGA--GATTATCTTAGAATAAGAAAAT--ATTTT---CAT-G-AGTCCCAAGC---ATTGC-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-GGACGTCATTAAGATG-AATTC-CAA-TATTT-AATACTCGAGAAATG-AAA-ATTTTGGAC-CAAA-GTGGCAGTCTATTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAGTTGCAGGGACCGGAG-GATTTCTTTTAATAAATTTGAAGCGAAA---TTTTCCTATGTTT-G--AAACATCTTTT-GGAT-GAGGAGATCCACCTCCCCAT-ATTT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGG-ATATATCCAATACCAATAATTC-TTTTCATTT--AAAACGATGCGTTTTCGTGGCTTTTTCTCAATAAGGCAACAGCTGTTGNTAAGTTANACCTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGTAATTATTGNTACGCAATTTGTTATTATATTGCCATTAA-T-GTAA-ATTCATTCC-CTTGAGGTTTGCCATTTTGAGTTA-AATATCAAAACTTTTGGATTTATTCTACATCGACCT---GCAGTTTCCAGT-TTGA--ACAATATTGCTTCTGGAGAATATCCAAAGGCTGTTTTGTAAACGCACGTTNCTTTCGGAAAGATTACAATNTCATCAAGCATGCATAATCAGACAGTTTACGATGAACATTGTTTACTTTGTACAGGGATCNCAAATTTTCTTCCATGTTTCAAGTCCATTGACAATTAACCATCCAATAAATATATTTGAAGAGTATNGGGCTTAAAAACATNCCCTTGTTTTGACACGCCACATTCAAGAATTGAATATCATCACTTACAACCATNNNAAAANTTTTATTCTACTCGTTGTTCTCCTTACTATACCATGGGAAAAATAGAATGATNAAACAGTTTTGTTGGGAAATATCAGATGTCAAAGGAGATTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAGTGAGGCCGGCATTATACTTTTTTGTTTTTTGTANTGNNAATTATTGTGTTCGTATACTGAGAATAAGTGGTCTTTGAGTGTCCTACAGTTTTGTCTTTGAAATCCGAGTTTTGGTTTTTTTCAACTTATTAATTGACGATAGATGTTTACAAATTCNANNAGTCTAGTNNGGGAATTATTCCTATTGAAAAGTTTTCCCTAGGTTGATGGTAAATTGNNTGATACTCTGTNGTTGTTTGAGGCGNTCAAGCCTATTGACCAAGATTTATTAACANAGCAANTACTAAAATTAACTTTCAATAGTCCAACTTCTTGGGAATCACCCGGAATTGAGTATNAAGTGGAACAATTTTTCCAGAGNTTTCAACATNNGCATATCCCCCATTTTTCAGCATTTCATTTGGATATACATANCCATGGAGGATCTCTCCCATTTTTTCACGAACNTNAGGCAGCCTTTATTTNATNANTGGTNATGTTCTGGTTCAAGGGAAATGATTTATGTTGCAGCTGTNTCCGTTCNAAANCAT
gi|1 : CTGTTGTAAAATATATTTTTA---AAA-TGT----AAA------CTTTCAT-TGT-CA-AGACT-AATAT-TTCTCTG-TGTT-ATGTTA---------TAACACATTT----CT--AGGTAAGG--CA-TTTCTTAAGCT------TAGGA-ATA-G-GATT-----ACA-A-TG----AAAAAGGAAATGAA--TT--CAGCT--TCA-GTC-ACA-CCAG----TATT-GC-A-CAT-TTTGCAA-CATCTTTG-ATTCACCT-GAAGTGGA-TT-AT-AT-C---TA------CCAC-T--TTCTATTGC--AACT-TATG-AAGCACCTC----AATCTAATTTT-GCTAAGAGAGGATCTCTTCAGA-T--TTTTTCT-GAG--TAAATCAACATAATG-GACTTC-TTTTACTTGTGGATAATTTTTTT---ATAAAAATT-CAA-GT--TTTTTTGAAACCA-AAA-A-TGTTTGATG-----ATTGCT---TCTTGAGTGCA--CTGGTCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTG-TGAA-T----GAATTTTTAT-ATTTTGTAA-TGGTATG-AAAATCCGA--GATTATC-TAGAAT-AGAAAATAAATTTT---CAT---AGT-CCAAGC---ATTGTGGGTCAC-TGTGGATTGATAAAATGTTTA--AAAGCCAAGAATCGGGACGTCATTAAGATGAAATTC-CAA-TATTT-AATACTCGAG-AATG-AAATTTTTTGGAC-CAAA-GTGGCAGTC--TTACTTGAGTTCTAGATCTGCTAGACAACCAGCATTGGATGTTTTCGGCAG-TGC----ACTCGAG-GATTTC-TTTAATAAATTTGAGGCGAAAAATTTTTCCTATG-TT-GAAAAACATCTGTT-GGAT-GAGAAGATCCACCTCCCCATAATTT-CAACTACAATACAAGAAGAACTGGTAGTAC-AAT--AACATCAAAAAGCTTTTTCTAAAAGTTTACA-TGGTATATATCCATTACCAATAATTCTTTTTCATTT--AAAAC-ATGC-TTTTCGTGGCTTTTTC-CAATAA-GC-ACAGCTGTTGATAAGTTAAACCTTCCATTGCA-TTCAACATAA-ACCTAA-ATAA-CAGTAATTATTGGTAGGCAATTTGTTATTATATTCGCATTAATT-GTAACATTCATTCC-C-TGAGG-TTGCCATTCTGAGTTA-AATATCAAAACTTTTGGATTTA-TCTACATTGACCT---GCAGTTTCCAGT-TTGA--GC-ATATTGCTTCT-GAGAATATTCAAAGGCTGTTTTGTAAAC-CATGTTTCTTTAGAAAAGATTACAATTTC-TCAAGCATACATAA-CAGACAGTTTAC-ATGAACATTGTTTACTTTGTACAAGGATCCCAAATTTTTTTCCATGTTTCAAGTCCATTGACAATTAACCAT-CAATAAAT-TATTTGAAGAGT-TGGGGCTT-AAAACATGCCCT--TTTTGACACGCCAC-TTCAAGAATTGAATA-CATCACTTA-AACCATCAGAAAAATTTTATTCTACTCGTTG----CCTTACTATACCATGG--AAAATAGAAT-ATAAAACAGTTT--TTGGAAAATATCAGAT-TC-AAGGAG-TTTATAAAATAAACCCAATCTCCAGACAGTGGTCCAATGCTTTCCTAAGATCAAATGAGGCC-GCA-TATACTTTTTTG-TTTTTGTACTGTGAATTATTGTGTTGATA-A--GAGAATAAGTGGTC--TGAGTGTCCTACAGTT---TCTTTGAAA-CCAAG--TTGGTTTTTTTC-ACTTATTAATTGAC-ATAGATGTTTACAAATTCTATAAGTCTAGTATGGGA--TATT-CTATTGAAAAGTTTTCCTTAGGTTGA-GGTAAATTGCAT-ATACTCT-TAGTTGTTT-AGG-GGTCAAGCCTATTGACCAAGAT---TTAATACAGCAATTACTAAA--TAACTTTCAATAGTCCAACTTCTTGGGAAT-ACCCAGAATTGAGTATAAAGT-GAACAATTTTTCCAAAGCTTTCAACATTGGCATATCCCCCA-TTTTCA-CATTTCATTTGAATAT-CATAATCATGGAGGA-CTCTTCCATTTTTTCACGAACATAAGGCAGTCTT--TTTCATTAATGGTCATGTTCTGGTTCA--GGAAATG--TTA-GTTG-AGTT-TATCCGTTTCAAACCAT
gi|10 : -TATG-T-GCAC-TC----AATCGAATTTT-ACTAAGAGGGGATCTCT-CGGA-TC-TTTTTCT-GAA--CGAATCAACATA-TG-GACTTC-TTTTTCTAATGTTTAATTTTTTTTTCATAAAA-TT-CAAGGT--TTTTTT-AA--CATAAG-G-TTTTTGATA-----ATTGCT---TC-TGAGTGCA--CTGATCAATT--ATTCTTTGTTTTATG--TTTGGTAA-AAGGTGTTGAATT----GAAATTTTAT-ATTTTGTAA-TGTT
gi|14 : GAG-GATTTCTTT-AATAAATTTGAAGTGAAA---TTTTTCTATGTTT-G--AAACATCTTT--GCA--GAG-AGATCCAC-TCCCCAT-TATT-C-ACTACAATA-AAGAAGAACCGGTAGTAC-AAT--AACATCAAAAG--TTTTTCTAAAAGTTTACA-TGG-AT-TATCCAATACCAATAATTC-TTTTCATTT--AAAACg
gi|15 : ATATTGCCATTAA-TAGTAA-ATTCATTCC-CTTGAGGTTTGCCATTT-GAGTTA-AATATCAAAACTTT-GGATTTATT-TACATCGACTT---GCAGTTTCCAGT-TTGA--ACAATAT
gi|16 : TTT----CTTAAGGTAAGG--CA-TTTCT---GCTCATTCTTACGA-TTAAG--ATTT----ACA-ATTG----GAAAAGAAAATGAT--TTCTCACCTGCTCAGATCGACA-CAAG---GTGTG-AC--ACAT-T
gi|2 : TACTTAT--ATAATTTTCT----ATAAAA-TTTCAA-GTCGTTTTTT-TAACCA-AAAGA-TTTTGGGTGTATGAATTGACGGATCCTGAGTGCAAGTTGGTCAATTTCATTCTTTGTTTTATAGTTTTGGTAA-AAGGGGT-GAATTTTTTGAATTT--AT-ATTTTGTAAATGTTTTGGAAAATCCAAAGGATTATCTGA-AATAGGAAAAT----TTT---CAT-GTAGTCC-AAGC---ATTTC-GGTCA-TTGTGGATTGATAAA--GTTTAGAAAAG-CAAA------GACGT-AT-AAGATG-A-TTC-CA--TATCTGAATACTCGAGAA-TGTAAA-ATTTTGGACACAAAAGTGGCAGTCTATTACTTG----------CTGTTAGACA-CCAGCATTGGATGTTTTTG-CAGTTGCAGGGACCGGAGAGATTTCTTTTAATAAATTTGAAGTGAAA---TTT--CTATGTTTTG--AAACATCTTTTTGGATTGAAGAGATCAACTTCCC-AT-ATGTGC-ACTACAATA-A-GAAGA--TGGTAGTACCAATGTAATATCAAAAAGTTTTTTCTAAAAGTTTACACTGG-ATAT-TCAAATACCAATAATTC-TTTTCATTTGTAAAACGATGCGTTTTC-TGGCTTTTTCTCAATAAGGCAACAGCTGTTACTAAGTTACACTTTCCATTGCATTTCAGCATAACACCTAAGATAATCAGT-ATT-TTGTT-CACAATTTG-TATTATATTGCCATTAA-T-GTAA-ATTCATTCCATTTGAGGTTTGGCCTTTTGAGTTAGAATATC-AAACTTTTGGATTTATTCTACATTGACCTTGAG-AGTTTCCAGTCTTGAACACAATA----TTCTGGAGAATATC--AAGGC--TTTTGTAAACGCACTTTGCTTTCAGAAAGATTACAATATCATC-AGCA-GTATAATCAGACAGTTTACGATGAACATTGTTTAC-TTGTACAGGGATCACA----TTCTTCCAT-TTTCA--TCTATTGAC-AT--ACCATCCAATAAATATA-TTGAAGAGTATCGGGCTTAAAAACATCCCCTTGTTTTGAC---CCACATTC-AGAATTGAATATCATCACTTACAACCATATCAAAATTTTTATTCTACTTGTTGTTCTTTTTACTATA-CATGGGAAAAATAGAATGATTAAACAGTTTTGTTGAGAAATATTAGATGTCAAAGGAGATTTAT-AAATAAACCCAATCTCCAGACAGTG--TCAATGCTTTCCTAAGATCAAGTGAAGCCGGCATTAT-CTTTTTTGTTTTTTGTAATGGCAATTA-TATGTTCGTATACTGAGAATAAGTGGTCTTTGA-TGTCCT-CAGTTTTGTCTTTGAAATCCGAATTTTGG---TTTTCAACTTATTAA-TGACGATAGA-GTTTAC-AATTCAAGTAGTCTAGTTGGGGAATTATTCCTATTGAAAAGTTTTTCCTAGGTTGATGGT-AATTGACTGATACTCTGTTGTTGTTTGAGGCGTTCAAGCCTATT-ACC-AGATTTATTAACAAAGCAAGTACTAAAATTAACTTT--AT--TCCAACTTTTTGGGAATCACCAGGAATTGAGT-TTAAGTGGAACAATTTTT-CAGAGGTTTCAACATATGCATATCCCCCATTTTTCAGCATTTCATT--GATATACATATCCATGGAAGATCTTTCCCATTTTT---CGAACTTTAAGCAGCCTTTATTTGATAATTGGTAATG-TCTGGTTCAAGGAAAATGATTTATGTTGCAGCTGTTTCTGTTCAAAAACAT
gi|3 : ttcaCTGTTC--AAATATATTTT-A---ACAATGT----AAC-------TTTCATGTGTTCA-A--CT-AATAT-TTCTCTG-TGTTTATGTTA---------TAA-ACATTT----TT-AAG-TA-GGGCCA-TTTCTTA-GCT------TAG-A-ATAAG-GAAT-----ACA-A-TG----AAAAAAGGAATGAAATTT-TCATCT--TCA--TC-ACAACCAG----TATT-GC-A-CAT-ATTGCAA-CATCTTTG-ATTCAAAT-GAGGTGGAATTTATTAT-C---TA------CCAC-T--T-CTATTGCCAA-CTATATG-A-GCAC-TC----AATCTAATTTTTGCTAAGAGAGGATCTCT-CGCA-TT-TTTTTCT-GAG--TAA-TCAACATA-TG-GACTTC-TTT-ACTTGTGTATA--TTTTTT---ATAAAA-TT-CAA-GT--TTTTTG-AAACCA-AAA-ATTTTTTGATG-----ATTG-C---TCTTGAGTGCA--CTGGTCAAAT--TTTCTTTGTTTTATG--TTTGGTAATAAGGTGTTGAATTG---GAATTTTTATAATTTTGTAA-TG-TAT--AAAATCCAA--GATTATCTTAGAATAAGAAAAT--ATTTTTCCCATAA-AGTCCCAAGCCCAATTGT-GGTCACTTGTGGATTGATAAA--GTTTA--AAAG-CAAGAATC-AGACGTTATT-AGATG--ATTCGCAATTAATT-GATAATCGAGAAATG---A-ATTTTGGAC-CAAA-GTGg
gi|4 : tacaaatacaaatatttattggcacacacaaacacaattacaaacattgcaaaaggcccattgaacatcatttggcagtgttaatttacatttttttaatgtaatagcatgttgaatttctatattcacaacacgtcctttgataaatttcctgtaatttttaaaacttttgtgtaacatcaCTGTTC--AAATATATTTTTA---ACA-TGT----TAC-------TTTCAT--GT-CAGAGACTGAATATATTCTCTGCTGTT-ATGTTA---------TAA-ACATTTTTCTCT-AGTGTA-GG--CACTTTCTTA-GCT------ATGTA-ATA-G-GATTT----ACACA-TG----AAAAAGGAAATGAA--TT-TCATCT--TCA-ATC-ACA-CCAG----TATTTGC-A-CATATTTGCAAACATCTTTGCATTTCAATAGAAGTGGAATT-AT-ATGC---TGAGCTCTCCAC-TCTT-CTATTGCCAA-CT-TATGATAGCAC-TC----AATCTAATTTT-GCTAAGAGAGGATCTCT-CAGATTT-TTTTTCTGGAG--TAAATCAACATA-TGCGACTTCTTTTTACTTGTGTATA
gi|5 : atacaaatttactaaattatttattgcgtccacaaacacaatacaataatggcaaagaccattatgaacatattttggcaagtcttgtataatttacaatttttttttattttgtacaaatagcattgttgatttctatatcaaaacagtctttgcataattcactgtaattttttaagactttgtagtcaaatccaTGTTG--AAATATATTTTTC---ATC-TGT----AAC------TTTT-AT-TGT-CC-AGATT-AATAT-TTCTCTG-TGTT-ATGTTA---------AAA-ATGTTT----CT-AAGGTA-GG--CA-TTTCTTA-GCT------TAGAATATAAGAGATTTGCAAACA-A-CGAAAAAAAAAAAAAATGAA--TT-TCATCC--TCA-ATC-ACA-CCAGTACGTATT-GCAAACAT-TT--CAA-CATCTTTA-ATTC-AAT-GATATAGAATT-AC-ATACCTATA------CCACTT--T-CTACTG-CAAGTT-TATG-T-GCAC-TC----AATCTAATTTT-ACTAAGAGAGGATCTCT-CAGA-TC-TTTTTCT-GAGAATAAA
gi|6 : aaaacaaatacaactatttattggcacaaacacaattacaataatttgtaaagacccatgggacatcattaaacaatatacatattttatgtaatcgcatgtccctgactcctgtacttattcaaaacagtctccaataaatttcacagaaatttttgatactttctcaaatctgtatatcaaCTGTTC--AAATATATTTTAA---ACA-TGTTTGTAAC------TTT------GT-CA-AGACT-ATTAT-TTTTCTG-TGTT-ATGTTAGCCTATAAATAG-ATGTTT----CT-GAGGTA-GG--CA-TTTCTTA-GCTTC----TAAGA-ATAA--AATTT----ACA-A-TG----AAAAAGAA----AA--TT-CCATCT--TCA-ATC-ACA-CCA----GTATT-ACGAACA---TTACAA-C--------------AT-GATGTGGAATT-AT----C------------------------TTG-CAAGTT-TATG-T-GCAC-TCTTGAAATCTAATTTT-ACTGAGAGAGGATCTCT-CAGA-TCTTTTTTCT-GAG--T
gi|7 : ataagatacaaaagttggcgcaaacacaatttaattggcaaaggccctttgaatgtttacattattttttatgcaatttaaatttcatcgaaatttttaaaactttgtatacatcaTGTCA--AAATATATTTTTAGTAACA-TGT----AAC------TTTTCAT-TAT-C---------ATAC-TTTGGTG-TG-C-ATGTTA---------CA
gi|8 : ctatacacatagcaataactatatttatttggcacaacgatacattaacaataattggctaaaagtgccgcattgaacatagcatttggcagtgttaatttacatttttatgagtagatgagtcatgtttgatctttctataattcaaaacaagtctttgataaattcatgtaaatataattataaagactttgtagtaaatccacttgcaCTGTTT--AAATATATTTTTA---GCA-TGT----AACTTTCATCTTTCAT-TGT-CA-AGACT-AATAT-TTTTCTG-TGTT-ATTTTA---------T
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATATAAATACAAATATTTATTGGCACAAACACAATTACAATAATTGACAAAGGCCCATTGAACATCATTTGGCAGTGTTTACATATTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAACTTTGTGTATATCACTGTTCAAATATATGTAAATATAACTTCAGAATCATCTTATTTAATAGTATGAATAGTGT
Unaligned ( gi|11 ): CACAAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATATATTTCAAGTGCTGTAATTTTTAAGACTTTGTGTAAATCACTGCAGCCAGTTTTCTGATACTTCTTTAAAATTATTTTCATCTCAATATTGAAGAGTTTC
Unaligned ( gi|12 ): TCTAAATATAAATCGTACAAAAACCAATACAAATATTATTGGCACAACACATAATTCAATAATTGGCAAAGGCCCATTGAACATCATGGCAGTGTTTCATTTGTTTATGTATAACATATTTTCTATATTTCCAAAAGCGAGGTGGCGGTTGATTATAGATGTTTCACTGTAACTAGTTAAAGACTTTGCGAAATGATCACGGTTCAGAATATT
Unaligned ( gi|13 ): AATATACAAATACAAATATTTATTGGCACAAACACAATTACAATAATAATTTAATTGGCAAAAGCCCATTGAACGTCATTTGGCAGTGTTTACATTTTTTATGTAATAGCATGTTGATTTCTATATTCAAAACAGTCTTTGATAAATTTCACCGTAATTTTTAAAATTTTGATATATCACTGTTCAAATATATTTTTAA
Unaligned ( gi|17 ): TACCACAGCACTAACATTACTTTTTATACAAATACAAATACAATACAAATATTAATTGGCAAAGGCCCATTGAACATCATTAGACAGAGTTTACATATTTTT
Unaligned ( gi|18 ): AAACACAATTACAATAATTGGCAAAGGCCCATTGAACATCATTTGGCAGTGTTAATTTACATTTTTTATGTAATAGCATGTTGATTTCTAT