lowQualScore : 1 1111 22222 1 1 111 111 1111 222222222222222222222222 11 111111 444444 2222 111 222222 11111 22222222 11 2222 1 1111 11 222
lowQualScore : 3 0000 9 55555 99 6 1 5 000 6 77 5 000 0 99 1 2222 2 9 3 5 444444444444444444444444 99 00 888888 7 6 99 2 444444 1111 888 3 5 5 6 66 777 5 888 66 111111 8888 0 5 5 77777 5 5 5 5 66 3 5 5 1 22222222 55 3333 5 5 5 0 99 3333 1 22 0 333 4 4 6
lowQualScore : . .... . ..... .. . . . ... . .. . ... . .. . .... . . . . ........................ .. .. ...... . . .. . ...... .... ... . . . . .. ... . ... .. ...... .... . . . ..... . . . . .. . . . . ........ .. .... . . . . .. .... . .. . ... . . .
lowQualScore : 3 2222 8 22222 22 7 8 0 000 0 99 7 000 6 66 7 1111 7 6 9 7 333333333333333333333333 22 77 777777 8 7 33 2 444444 0000 999 6 0 0 0 99 555 0 888 99 999999 9999 1 0 0 22222 0 0 0 0 33 9 0 0 3 99999999 77 0000 1 0 0 0 55 0000 4 00 2 888 0 0 0
consensus : TAT-AATTAAAACATGCGATTT--T--TTCACTG--TTCTTTATTA-AAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAAC---AATCGAGTTT--A-TTGGT---CTGTATA-GACG----ACTATGGAGGNTTGGGAGGTG-GATG------A---AG-T-AT-------ACAG--GTN-GG---T--AATATG-ATNCGTCTAGAAT-TATGGGANTGAAAGNTATTTG-ACTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-AC-C---G-TCA-ACC-GT-GC-GCAGAAAAATCA-GCG-CAA-C-AA-A-TTGCAC--AAAATTTC-TATGGG-AGGACC-TG-TAG-CGTT--ATGGTCAGN-CAAAAATATA--AAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
Reference ( gi|1 ) : TAT-AATTAAAACATGTGATTT--T--TTCACTG--TTCTTTATTA-AATGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCCAAAC---AATCGAATTT--A-TTGGT---CTGTATA-AATG----ACTATGAAGGATAAGAAGGTG-GATG------A---AA-T-AT-------ACAG--GTT-GG---T--AATATG-ATATGTCTAGAGT-TGTGGGATTGAAAGGTATTTG-ATTG-ATCAAT--GT-TG-G---AA--AG-T----GGAGAAA---TAC-AC-C---A-TCA-ACC-GT-GC-GCAGAAAAATCA-GCG-CAA-G-AA-C-TTGCAC--AAAATGTG-TATAGG-AGGACC-TG-TAG-CGTT--ACGGTCAGA-CAAAAATAT---AAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTTATAGTAGAAATTATTTTCTAAAGAAATTAGAAAAGGCAATAGA
gi|2 : TAT-AGTTAAATCATGCGATTTCTT--TTTACTG--TTCTTTATTA-ACAGTTCA
gi|12 : taatgcattttttaaaaagtgtttTAT-AATTAAAACAATTCA-TT--T--TTCACTGTTTTTTTTATTA-AAAGTTCAttgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|11 : taaaatgagtgcaacaccagggcataaagttagaagcataaacataatcacattttggagcatttttaatcaagacttagtattctattctaatgaattttttaaaaagtgtttTATCAATTAAAACATGCGA-TT--T--TTCACTG--GTCTTCATTGTAATGttgaaatgaattcaatgtttggctgtccatttgagtcttttgggtaaatagatgt
gi|10 : aagaaaaccagagcataagcataaacatcaacacattttgtttcagagcatttttaatcaagaattcttgtattctaatttaatgtattttttaaacaagtgttATTAAAACATTCAATTT--TTTTTCACTG--ATCTTCATTA-AAaatgtgcattcaatatgcatttaagttcaattggtcgctctttgggtccttttgagtaaatcgacgcgc
gi|3 : aacaaaaaataatttaggaatgacatccatggcaagagctggcaccgttatagaaaaaaacccatattttatcatgttttgtcttttaaatcaatacttagtgttcaattctaatgcattttgtgtttcAAAAC---TGACCTGGT--TTCACTG--TTCTTTATTA-AAAGTTCAaattattgaaatgaattaaatgtgcattcggtgcatcaatatgcatttaagttcatttgg
gi|5 : gAAAAC-TGCGATTT--TG-TTCACTG--TTCTTT-TTA-ACAGTTCAttgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagattcacaacaatcgagtttacttggtctgtatagatggatatggaggttagggagggggattaagtatacagctgtaggaaattgactcgttaaatagggaatgaagttatttagatggccaatccgcgcggaaagggaagaaatacaccgttcaaccgtgcggcagaaagactacacgccaccaacattgcacaaaattgctatcggagaacctgttagcgttatggtcagtcaaaaatataaaaaccataacgctaccagttctgcatc
gi|4 : cgAATTCAAAAC---AG-CGAGTCT--A-TAATT---TCGTGTATAACG----AA-ATGGAG-ATTGGGAGGTG-GATG------ATAGAA-TTAT-------ACAG--GTTAGG---TTAAATATT-ATTCGTTTAGAAT-AG-GAGATTG-------TTTA-ACTG-ACCAAT--G--CG-A---CA--AG-T----GGGAGAA---TAC-A--C---G-TCA-ACCTGTCGC-GCGGGAAttgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagattcaaaaacaatcgagtttattggcagtatagacgacttgaagaaataggaggtggatgaaaatatacaggttggtaatataatatgtctagaattaggaatgtaaggttttgaattgcaccaaagccgggaccagttaaagaaatacaaccaatcaaccgtgcgcagaaaatctgcg
gi|7 : gaatggcgggATTCAAAAC---AATCGAGTTT--A-TTGGT---CTGTATA-GATG----ACTATGGAGGGTTAGGAGGTG-GATG------A---AG-T-AT-------ACAG--GTA-GG---T--AAATTG-ACTCGTTTAGAAT-TA-GGGAATGACAGTTATTAG-ACTG-GCCAAT--GC-CG-G---AA--AG-T----GGAAAAA---TAC-AC-C---G-TCA-ACC-GT-GC-GCAGAAAAAGCA-GCA-CCA-G-AA-A-TTGCAC--AAAATTTC-TATGGG-AGGACC-TG-TAG-CGTT--ATGGTCAGT-CAAAAAtnnnnnnnnnnnnnnnnnnnnnnnnngggaaaaaaaaaccagcgccacaaattgcacaaaatttctatgggaggacctgtagcgttatggtcagtcaaaaatataaaaaccataacgctacatttctgcagctacttgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|3 : taaatagacgtacccctttaatagatcatctcccgtcatggcaggagATTCACAAC---AATCGAGTTT--ACTTGGT---CTGTATA-GATG----GATATGGAGGTTAGGGAGGGG-GATT------A---AG-T-AT-------ACAGCTGTA-GG---A--AAT-TG-ACTCGT-TAAA---TA-GGGAATG-AAGTTATTTA-GATG-GCCAATCCGCGCG-G---AA--AG-G----GAAGAAA---TAC-AC-C---GTTCA-ACC-GT-GCGGCAGAAAGACTACACGCCAC-C-AA-CATTGCAC--AAAAT-TGCTATCGG-AGAACC-TGTTAG-CGTT--ATGGTCAGT-CAAAAATATA--AAAACCATAA-CGCTACCAGTTCTGCAa
gi|2 : gaaaactgacctggtttcactgttctttattaaaagttcattgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagATTCAAAAC---AATCGAGTTT--A-TTGGT---CTGTATA-GACG----ACTATGAAGGATTAAGAGGTA-Gtc
gi|9 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatTTCAAAACCCCAATCGAGTTTTAA-TTGGTGGACAGCTTA-GACGTACGACTATGAAGGTTAGGAAG-TGAGATGTTTTGGA---GA-T-ACTATTATGACAG--GTT-GGGCTC--AATATGCATAAGTCTAGAAT-CC----------AG---TTTG-ATTG-ACCAAT--GC-CG-AAATAA--AG-TTGCGAGAGAAAAGTTAC-AC-CCGTA-T-A-GCC-GT-GC-GCAGAAGAA---------AA-A-AATC-CTGC-------------CATAGA-AAGACCATGATAGTTGTT---------------AAATAT---AAAGCCACAATTACTA-CAGTTCTGCAGcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|6 : TCAAAAC---AATCGAGTTT--A-TTGGT---CTGTATA-GACG----ACTATGGAGGGTTAGGAGGTG-GATG------A---AG-T-AT-------ACAG--GTA-GG---T--AAATTG-ATACGTTTAGAAT-TA-GGGAATGAAAGTTATTAG-ACTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-AC-C---G-TCA-ACC-GT-GC-GCAGAAAAATCA-GCG-CCA-C-AA-A-TAGCAC--AAAATTTC-TATGGG-AGGACC-TG-TAG-CGTT--ATGGGCAGT-CAAAAATATAAAAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGT
gi|5 : AAAC---AATCGAGTTT--A-TTGG----CAGTATA-GACG----ACT-TGAAGAAATAGGAGGTG-GATG------A---AAAT-AT-------ACAG--GTT-GG---T--AATATA-ATATGTCTAGAAT---TAGGAATGTAAGGT-TTTGAATTGCACCAAA--GC-CG-G---GACCAGTT----AAAGAAA---TACAAC-CA--A-TCA-ACC-GT-GC-GCAG-AAAATCT-GCG-ctacctcaattgtaaatgggaattggatttacaaaagatt
gi|13 : cgaaaactgcgattttgttcactgttctttttaacagttcattgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagattcaaGTCTAGAATGTATGGGATC-AAAGGTATTTG-ATTG-ACCA----GC-TGAG---AA--AG------GTAGAA------T-AC-C---A-TCA-CCC-GT-GC-GCA-CAAAATCA-GCG-CAATT-AA-A-TTGCACGAAGAATGTC-TATGGG-GAGACC-TG-TAG--GTC--ATGGTCAGA-CAA-----------------AA-CGCTA-CAGTTCT-CAGCTA
gi|14 : taGTCTAGAATGTATGGGAT--AAAGGTATT-G-ATTG-ACCAAT--GC-TG-G---AA--AG------GGAGA-----T-C-ACAC---A-TCACACC-GT-GC-GCA--AAAATCA-GCG-CAA-TTAA-A-TTGCACCAAGAATGTC-TATGGGGAGGACC-TG-TAG--GTC--ATG-TCAGA-CAAA-------------CGTAA-----A-CAGTTCTGCAGCtt
gi|4 : AAAAAAACCA-GCG-CCA-C-AA-A-TTGCAC--AAAATTTC-TATGGG-AGGACC-TG-TAG-CGTT--ATGGTCAGT-CAAAAATATA--AAAACCATAA-CGCTA-CATTTCTGCAGCTAat
gi|16 : gaatggcgggaattcaaaacagcgagtctataatttcgtgtataacgaaatggagattgggaggtggatgatagaattatacaggttaggttaaatattattcgtttagaataggagattgtttaactgaccaatgcgacaagtgggagaatacacgtcaacctgtcgcgcgggaatnnnnnnnnnnnnnnnnnnnnnnnnngggaaGG-AGAAC--TG-TAG-CATTTAGTGATCAGAACAAAAATTTG--AAAACCATAA-CGCTC-CAGTTCTGC-GCTActtgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|2 : atAAAAATAT---AAAACAATAA-CGCTA-CAGTTCTGCAGCTatatgaaaccgcagcatttataattaaag
gi|18 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACCATAA-CGCTA-CAGTTCTGCAGCTATGTCATA
gi|17 : ACCATAA-CGCTA-CAGTTCTGCAGCTAGTCCATAG
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CAAACAAAAAATAAATTAGGTAAAGAGCCTTGGGGTACGTCCATAGGAAAAAAAGCATATTTTAAATATATCTTTTTTTAAATCAAGAACCTAGTAATTTTATTAATGATGCATCTAATAGTGGTTTTTTCAATTAAAACTTGGCGATTTTTTTCCAACTGAATTATTCAAATAAAAGTTCATTGAAATGATTTCAATGTGGCAATTTTTTGGTGCATTATAAAATTAATCAATATGCATAAAAGTTCATGTAATGACTCGGCCATTGGGTA
Unaligned ( gi|15 ): AAACAAAAGATAAAAATAGGGATTACGTCCATGGCAAGAACTGGGTACTGTTATAGAAAAAAAAACCATATTTCATCAAGTTTTTTCCTTAATTCTCAGAGAAATATGAAACATATAATGTCTCATTGAAATTAATTCAGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 3333333333333333 111111 1 111111 222 11
lowQualScore : 0 6 3 77 33 77 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 888 66 5 888 888 5 0000 5 2 5 3333333333333333 5 77 5 1 444444 5 5 1 0 8 8 6 2 6 1 2 4 1 4 66 4 4 777 66 888888 1 777 4 4 4 4 8 4 4 4 4 33 2 4 3 111 5 33 4 4 4 4 77 66 0 77 999 5 3 3
lowQualScore : . . . .. .. .. .............................................................................................................................. . ... .. . ... ... . .... . . . ................ . .. . . ...... . . . . . . . . . . . . . . .. . . ... .. ...... . ... . . . . . . . . . .. . . . ... . .. . . . . .. .. . .. ... . . .
lowQualScore : 0 7 2 99 66 99 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 888 99 0 888 888 0 6666 9 0 0 0000000000000000 7 99 7 0 777777 4 7 0 9 9 1 9 0 9 8 2 4 7 4 11 4 4 888 11 444444 9 888 4 4 4 4 9 4 4 4 4 88 4 4 0 555 0 88 4 4 4 4 33 11 1 00 666 6 6 6
consensus : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGGAGGTG-GATG-----A-AG-------TAT-ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGANTGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCNA-C-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
Reference ( family-1828 ) : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGNTTGGGAGGTG-GATG-----A-AG-------TAT-ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TATGGGANTGAAAGNTATTTG-ACTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCAA-C-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
gi|1 : TAT-AATTAAAACA-TGTGATTT--T--TTCACTGTTCTTT--ATTAAATGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCCAAA-C---AATCGAATTT--A-T---TGGT---C-TGTATAAATG----ACTATGAAGGATAAGAAGGTG-GATG-----A-AA-------TAT-ACAG--G-TTGG---T--AATATG-ATATGTCTAGAGT-TGTGGGATTGAAAGGTATTTG-ATTG-ATCAAT--GT-TG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-AT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCAA-G-AA-CTTGCAC--AAAATGTGTATAGG-AGGACC-TG-T-AG-CGTT--ACGGTCAGA-CAAAAATAT--AAAA-CCATAA-CGCTA-CAGTTCTGCAGCTAGGTTATAG
gi|10 : ATTAAAACA-TTCAATTT--TTTTTCACTGATCTTC--ATTAAAAATTtagaaattattttctaaagaaattagaaaaggcaataga
gi|11 : aacaaaaaataatttaggaatgacatccatggcaagagctggcaccgttatagaaaaaaacccatattttatcatgttttgtcttttaaatcaatacttagtgttcaattctaatgcattttgtgtttcTATCAATTAAAACA-TGCGA-TT--T--TTCACTGGTCTTC--ATTattgaaatgaattaaatgtgcattcggtgcatcaatatgcatttaagttcatttgg
gi|12 : aagaaaaccagagcataagcataaacatcaacacattttgtttcagagcatttttaatcaagaattcttgtattctaatttaatgtattttttaaacaagtgttTAT-AATTAAAACAATTCA--TT--T--TTCACTGTTTTTTTTATTAAAAGTTCAgtaatgaatgtgcattcaatatgcatttaagttcaattggtcgctctttgggtccttttgagtaaatcgacgcgc
gi|13 : taaaatgagtgcaacaccagggcataaagttagaagcataaacataatcacattttggagcatttttaatcaagacttagtattctattctaatgaattttttaaaaagtgtttGTCTAGAATGTATGGGA-TCAAAGGTATTTG-ATTG-ACCA----GC-TGAG---AA--AG------GTAGA------AT-A-C-C-AT-CA-CCC-GT-GCG-CA-CAAAATCA-GCGCAATT-AA-ATTGCACGAAGAATGTCTATGGG-GAGACC-TG-T-AG--GTC--ATGGTCAGA-CAA-----------------AA-CGCTA-CAGTTCT-CAGCTAttgaaatgaattcaatgtttggctgtccatttgagtcttttgggtaaatagatgt
gi|14 : taGTCTAGAATGTATGGGAT--AAAGGTATT-G-ATTG-ACCAAT--GC-TG-G---AA--AG------GGAGA-----T-C-A-CAC-AT-CACACC-GT-GCG-CA--AAAATCA-GCGCAA-TTAA-ATTGCACCAAGAATGTCTATGGGGAGGACC-TG-T-AG--GTC--ATG-TCAGA-CAAA-------------CGTAA-----A-CAGTTCTGCAGCtt
gi|16 : GG-AGAAC--TG-T-AG-CATTTAGTGATCAGAACAAAAATTT--GAAAACCATAA-CGCTC-CAGTTCTGC-GCTAat
gi|17 : atACCATAA-CGCTA-CAGTTCTGCAGCTAGTCCATAGatatgaaaccgcagcatttataattaaag
gi|18 : ACCATAA-CGCTA-CAGTTCTGCAGCTATGTCATAcctgcttcgattaaaaa
gi|2 : TAT-AGTTAAATCA-TGCGATTTCTT--TTTACTGTTCTTT--ATTAACAGTTCA
gi|2 : taatgcattttttaaaaagtgtttATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGAAGGATTAAGAGGTA-Gttgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|2 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatAAAAATAT--AAAA-CAATAA-CGCTA-CAGTTCTGCAGCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|3 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--T--TTCACTGTTCTTT--ATTAAAAGTTCA
gi|3 : gaaaactgacctggATTCACAA-C---AATCGAGTTT--ACT---TGGT---C-TGTATAGATG----GATATGGAGGTTAGGGAGGGG-GATT-----A-AG-------TAT-ACAGCTG-TAGG---A--AAT-TG-ACTCGT-TAAA---TA-GGGAATGAA-GTTATTTA-GATG-GCCAATCCGCGCG-G---AA--AG-G----GAAGAAA---TAC-A-C-C-GTTCA-ACC-GT-GCGGCAGAAAGACTACACGCCA-CCAACATTGCAC--AAAATTGCTATCGG-AGAACC-TG-TTAG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTACCAGTTCTGCAttgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagattcacaacaatcgagtttacttggtctgtatagatggatatggaggttagggagggggattaagtatacagctgtaggaaattgactcgttaaatagggaatgaagttatttagatggccaatccgcgcggaaagggaagaaatacaccgttcaaccgtgcggcagaaagactacacgccaccaacattgcacaaaattgctatcggagaacctgttagcgttatggtcagtcaaaaatataaaaaccataacgctaccagttctgcatc
gi|4 : gaaaactgacctggtttcactgttctttattaaaagttcattgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagAATTCAAAA-C---AG-CGAGTCT--A-TAATT--T---CGTGTATA-ACG----AA-ATGGAG-ATTGGGAGGTG-GATG-----ATAGAAT----TAT-ACAG--GTTAGG---TTAAATATT-ATTCGTTTAGAA--TAGGAGATTG-------TTTA-ACTG-ACCAAT--G--CG-A---CA--AG-T----GGGAGAA---TAC-A---C-GT-CA-ACCTGTCGCG-CGGGAAtc
gi|4 : gaatggcgggAAAAAAACCA-GCGCCA-C-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTA-CATTTCTGCAGCTAtnnnnnnnnnnnnnnnnnnnnnnnnngggaaaaaaaaaccagcgccacaaattgcacaaaatttctatgggaggacctgtagcgttatggtcagtcaaaaatataaaaaccataacgctacatttctgcagctacttgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : gaatggcgggaattcaaaacagcgagtctataatttcgtgtataacgaaatggagattgggaggtggatgatagaattatacaggttaggttaaatattattcgtttagaataggagattgtttaactgaccaatgcgacaagtgggagaatacacgtcaacctgtcgcgcgggaatnnnnnnnnnnnnnnnnnnnnnnnnngggaaAAAAC--TGCGATTT--TG-TTCACTGTTCTTT---TTAACAGTTCActtgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : cgATTCAAAAAC---AATCGAGTTT--A-T---TGG----C-AGTATAGACG----ACT-TGAAGAAATAGGAGGTG-GATGA----A-AA-------TAT-ACAG--G-TTGG---T--AATATA-ATATGTCTAGAAT-TA--GGAATGTAAGGT-TTTGAATTGCACCAAA--GC-CG-G---GACCAGTT----AAAGAAA---TACAA-C-CAAT-CA-ACC-GT-GCG-CAG-AAAATCT-GCGttgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagattcaaaaacaatcgagtttattggcagtatagacgacttgaagaaataggaggtggatgaaaatatacaggttggtaatataatatgtctagaattaggaatgtaaggttttgaattgcaccaaagccgggaccagttaaagaaatacaaccaatcaaccgtgcgcagaaaatctgcg
gi|6 : cgaaaactgcgattttgttcactgttctttttaacagttcattgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGGTTAGGAGGTG-GATG-----A-AG-------TAT-ACAG--G-TAGG---T--AAATTG-ATACGTTTAGAAT-TA-GGGAATGAAAGTTATTAG-ACTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-C-AA-ATAGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGGCAGT-CAAAAATATAAAAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTC
gi|7 : ATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGATG----ACTATGGAGGGTTAGGAGGTG-GATG-----A-AG-------TAT-ACAG--G-TAGG---T--AAATTG-ACTCGTTTAGAAT-TA-GGGAATGACAGTTATTAG-ACTG-GCCAAT--GC-CG-G---AA--AG-T----GGAAAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAAGCA-GCACCA-G-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAAtacctcaattgtaaatgggaattggatttacaaaagatt
gi|9 : taaatagacgtacccctttaatagatcatctcccgtcatggcaggagTTCAAAA-CCCCAATCGAGTTTTAA-T---TGGTGGAC-AGCTTAGACGTACGACTATGAAGG-TTAGGAAGTGAGATGTTTTGG-AGATACTATTATGACAG--G-TTGGGCTC--AATATGCATAAGTCTAGAAT-C----------CAG---TTTG-ATTG-ACCAAT--GC-CG-AAATAA--AG-TTGCGAGAGAAAAGTTAC-ACC-C-GTATA-GCC-GT-GCG-CAGAAGAA--------AA---AA-ATC----------CTGCCATAGA-AAGACCATGAT-AGTTGTT---------------AAATAT---AAAGCCACAATTACTA-CAGTTCTGCAGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAACAAAAAATAAATTAGGTAAAGAGCCTTGGGGTACGTCCATAGGAAAAAAAGCATATTTTAAATATATCTTTTTTTAAATCAAGAACCTAGTAATTTTATTAATGATGCATCTAATAGTGGTTTTTTCAATTAAAACTTGGCGATTTTTTTCCAACTGAATTATTCAAATAAAAGTTCATTGAAATGATTTCAATGTGGCAATTTTTTGGTGCATTATAAAATTAATCAATATGCATAAAAGTTCATGTAATGACTCGGCCATTGGGTA
Unaligned ( gi|15 ): AAACAAAAGATAAAAATAGGGATTACGTCCATGGCAAGAACTGGGTACTGTTATAGAAAAAAAAACCATATTTCATCAAGTTTTTTCCTTAATTCTCAGAGAAATATGAAACATATAATGTCTCATTGAAATTAATTCAGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 11111 3333333 111111 1 111111 111 11 111
lowQualScore : 0 6 3 77 33 77 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 888 66 5 888 888 5 0000 7 5 5 44444 5 4444444 5 77 5 1 444444 5 5 1 0 3 8 2 222 3 1 2 4 4 66 4 4 777 66 888888 1 777 4 4 4 4 8 4 4 4 4 33 2 4 2 888 5 33 4 4 4 4 77 66 0 77 555 1 3 3
lowQualScore : . . . .. .. .. .............................................................................................................................. . ... .. . ... ... . .... . . . ..... . ....... . .. . . ...... . . . . . . . ... . . . . . .. . . ... .. ...... . ... . . . . . . . . . .. . . . ... . .. . . . . .. .. . .. ... . . .
lowQualScore : 0 7 2 99 66 99 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 888 99 0 888 888 0 6666 0 0 0 33333 7 3333333 7 99 7 0 777777 4 7 0 9 3 9 6 888 9 8 2 4 4 11 4 4 888 11 444444 9 888 4 4 4 4 9 4 4 4 4 88 4 4 8 444 0 88 4 4 4 4 33 11 1 00 000 2 6 6
consensus : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GATG-----A-AGA------TAT-ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGAATGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-N-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
Reference ( family-1828 ) : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GATG-----A-AG-------TAT-ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGANTGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCNA-C-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
gi|1 : TAT-AATTAAAACA-TGTGATTT--T--TTCACTGTTCTTT--ATTAAATGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCCAAA-C---AATCGAATTT--A-T---TGGT---C-TGTATAAATG----ACTATGAAGGATAAGA-AGGTG-GATG-----A-AA-------TAT-ACAG--G-TTGG---T--AATATG-ATATGTCTAGAGT-TGTGGGATTGAAAGGTATTTG-ATTG-ATCAAT--GT-TG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-AT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCAA-G-AA-CTTGCAC--AAAATGTGTATAGG-AGGACC-TG-T-AG-CGTT--ACGGTCAGA-CAAAAATAT---AAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTTATAG
gi|10 : ATTAAAACA-TTCAATTT--TTTTTCACTGATCTTC--ATTAAAAATTtagaaattattttctaaagaaattagaaaaggcaataga
gi|11 : aacaaaaaataatttaggaatgacatccatggcaagagctggcaccgttatagaaaaaaacccatattttatcatgttttgtcttttaaatcaatacttagtgttcaattctaatgcattttgtgtttcTATCAATTAAAACA-TGCGA-TT--T--TTCACTGGTCTTC--ATTattgaaatgaattaaatgtgcattcggtgcatcaatatgcatttaagttcatttgg
gi|12 : aagaaaaccagagcataagcataaacatcaacacattttgtttcagagcatttttaatcaagaattcttgtattctaatttaatgtattttttaaacaagtgttTAT-AATTAAAACAATTCA--TT--T--TTCACTGTTTTTTTTATTAAAAGTTCAgtaatgaatgtgcattcaatatgcatttaagttcaattggtcgctctttgggtccttttgagtaaatcgacgcgc
gi|13 : taaaatgagtgcaacaccagggcataaagttagaagcataaacataatcacattttggagcatttttaatcaagacttagtattctattctaatgaattttttaaaaagtgtttGTCTAGAATGTA-TGGGATCAAAGGTATTTG-ATTG-ACCA----GC-TGAG---AA--AG------GTAGA------AT-A-C-C-AT-CA-CCC-GT-GCG-CA-CAAAATCA-GCGCAATT-AA-ATTGCACGAAGAATGTCTATGGG-GAGACC-TG-T-AG--GTC--ATGGTCAGA-CAA-----------------AA-CGCTA-CAGTTCT-CAGCTAttgaaatgaattcaatgtttggctgtccatttgagtcttttgggtaaatagatgt
gi|14 : taGTCTAGAATGTATGGGAT--AAAGGTATT-G-ATTG-ACCAAT--GC-TG-G---AA--AG------GGAGA-----T-C-A-CAC-AT-CACACC-GT-GCG-CA--AAAATCA-GCGCAA-TTAA-ATTGCACCAAGAATGTCTATGGGGAGGACC-TG-T-AG--GTC--ATG-TCAGA-CAAA-------------CGTAA-----A-CAGTTCTGCAGCtt
gi|16 : GG-AGAAC--TG-T-AG-CATTTAGTGATCAGAACAAAAATTT--GAAAACCATAA-CGCTC-CAGTTCTGC-GCTAat
gi|17 : atACCATAA-CGCTA-CAGTTCTGCAGCTAGTCCATAGatatgaaaccgcagcatttataattaaag
gi|18 : ACCATAA-CGCTA-CAGTTCTGCAGCTATGTCATAcctgcttcgattaaaaa
gi|2 : TAT-AGTTAAATCA-TGCGATTTCTT--TTTACTGTTCTTT--ATTAACAGTTCA
gi|2 : taatgcattttttaaaaagtgtttATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGAAGGATTAAG-AGGTA-Gttgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|2 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatAAAAATAT--AAAA-CAATAA-CGCTA-CAGTTCTGCAGCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|3 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--T--TTCACTGTTCTTT--ATTAAAAGTTCA
gi|3 : gaaaactgacctggATTCACAA-C---AATCGAGTTT--ACT---TGGT---C-TGTATAGATG----GATATGGAGG-TTAGGGAGGGG-GATT-----A-AG-------TAT-ACAGCTG-TAGG---A--AAT-TG-ACTCGT-TAAA---TA-GGGAATGAA-GTTATTTA-GATG-GCCAATCCGCGCG-G---AA--AG-G----GAAGAAA---TAC-A-C-C-GTTCA-ACC-GT-GCGGCAGAAAGACTACACGCCA-CCAACATTGCAC--AAAATTGCTATCGG-AGAACC-TG-TTAG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTACCAGTTCTGCAttgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagattcacaacaatcgagtttacttggtctgtatagatggatatggaggttagggagggggattaagtatacagctgtaggaaattgactcgttaaatagggaatgaagttatttagatggccaatccgcgcggaaagggaagaaatacaccgttcaaccgtgcggcagaaagactacacgccaccaacattgcacaaaattgctatcggagaacctgttagcgttatggtcagtcaaaaatataaaaaccataacgctaccagttctgcatc
gi|4 : gaaaactgacctggtttcactgttctttattaaaagttcattgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagAATTCAAAA-C---AG-CGAGTCT--A-TAATT--T---CGTGTATA-ACG----AA-ATGGAG-ATTGGG-AGGTG-GATG-----ATAGAAT----TAT-ACAG--GTTAGG---TTAAATATT-ATTCGTTTAGAAT-AG-GAGATTG-------TTTA-ACTG-ACCAAT--G--CG-A---CA--AG-T----GGGAGAA---TAC-A---C-GT-CA-ACCTGTCGCG-CGGGAAtc
gi|4 : gaatggcgggAAAAAAACCA-GCGCCA-C-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTA-CATTTCTGCAGCTAtnnnnnnnnnnnnnnnnnnnnnnnnngggaaaaaaaaaccagcgccacaaattgcacaaaatttctatgggaggacctgtagcgttatggtcagtcaaaaatataaaaaccataacgctacatttctgcagctacttgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : gaatggcgggaattcaaaacagcgagtctataatttcgtgtataacgaaatggagattgggaggtggatgatagaattatacaggttaggttaaatattattcgtttagaataggagattgtttaactgaccaatgcgacaagtgggagaatacacgtcaacctgtcgcgcgggaatnnnnnnnnnnnnnnnnnnnnnnnnngggaaAAAAC--TGCGATTT--TG-TTCACTGTTCTTT---TTAACAGTTCActtgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : cgATTCAAAAAC---AATCGAGTTT--A-T---TGG----C-AGTATAGACG----ACT-TGAAGAAATAGG-AGGTG-GATG-----A-AAA------TAT-ACAG--G-TTGG---T--AATATA-ATATGTCTAGAAT-TA--GGAATGTAAGGT-TTTGAATTGCACCAAA--GC-CG-G---GACCAGTT----AAAGAAA---TACAA-C-CAAT-CA-ACC-GT-GCG-CAG-AAAATCT-GCGttgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagattcaaaaacaatcgagtttattggcagtatagacgacttgaagaaataggaggtggatgaaaatatacaggttggtaatataatatgtctagaattaggaatgtaaggttttgaattgcaccaaagccgggaccagttaaagaaatacaaccaatcaaccgtgcgcagaaaatctgcg
gi|6 : cgaaaactgcgattttgttcactgttctttttaacagttcattgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGGTTAGG-AGGTG-GATG-----A-AG-------TAT-ACAG--G-TAGG---T--AAATTG-ATACGTTTAGAAT-TA-GGGAATGAAAGTTATTAG-ACTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-C-AA-ATAGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGGCAGT-CAAAAATATAAAAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTC
gi|7 : ATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGATG----ACTATGGAGGGTTAGG-AGGTG-GATG-----A-AG-------TAT-ACAG--G-TAGG---T--AAATTG-ACTCGTTTAGAAT-TA-GGGAATGACAGTTATTAG-ACTG-GCCAAT--GC-CG-G---AA--AG-T----GGAAAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAAGCA-GCACCA-G-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAAtacctcaattgtaaatgggaattggatttacaaaagatt
gi|9 : taaatagacgtacccctttaatagatcatctcccgtcatggcaggagTTCAAAA-CCCCAATCGAGTTTTAA-T---TGGTGGAC-AGCTTAGACGTACGACTATGAAGG-TTAGG-AAGTGAGATGTTTTGG-AGATACTATTATGACAG--G-TTGGGCTC--AATATGCATAAGTCTAGAATCCA-G-------------TTTG-ATTG-ACCAAT--GC-CG-AAATAA--AG-TTGCGAGAGAAAAGTTAC-ACC-C-GTATA-GCC-GT-GCG-CAGAAGAA---------A-A-AA-ATC----------CTGCCATAGA-AAGACCATGAT-AGTTGTT---------------AAATAT---AAAGCCACAATTACTA-CAGTTCTGCAGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAACAAAAAATAAATTAGGTAAAGAGCCTTGGGGTACGTCCATAGGAAAAAAAGCATATTTTAAATATATCTTTTTTTAAATCAAGAACCTAGTAATTTTATTAATGATGCATCTAATAGTGGTTTTTTCAATTAAAACTTGGCGATTTTTTTCCAACTGAATTATTCAAATAAAAGTTCATTGAAATGATTTCAATGTGGCAATTTTTTGGTGCATTATAAAATTAATCAATATGCATAAAAGTTCATGTAATGACTCGGCCATTGGGTA
Unaligned ( gi|15 ): AAACAAAAGATAAAAATAGGGATTACGTCCATGGCAAGAACTGGGTACTGTTATAGAAAAAAAAACCATATTTCATCAAGTTTTTTCCTTAATTCTCAGAGAAATATGAAACATATAATGTCTCATTGAAATTAATTCAGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 11111 111 1111111 111111 1 111111 111 11 111
lowQualScore : 0 6 3 77 33 77 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 888 66 5 888 888 5 0000 7 5 5 44444 5 999 8888888 77 5 1 444444 5 5 1 0 3 55 6 1 3 0 2 4 4 66 4 4 777 66 888888 1 777 4 4 4 4 8 4 4 4 4 33 2 4 2 666 5 33 4 4 4 4 77 66 0 77 555 1 3 3
lowQualScore : . . . .. .. .. .............................................................................................................................. . ... .. . ... ... . .... . . . ..... . ... ....... .. . . ...... . . . . . .. . . . . . . . .. . . ... .. ...... . ... . . . . . . . . . .. . . . ... . .. . . . . .. .. . .. ... . . .
lowQualScore : 0 7 2 99 66 99 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 888 99 0 888 888 0 6666 0 0 0 33333 7 999 6666666 99 7 0 777777 4 7 0 9 3 66 7 8 9 8 2 4 4 11 4 4 888 11 444444 9 888 4 4 4 4 9 4 4 4 4 88 4 4 5 000 0 88 4 4 4 4 33 11 1 00 000 2 6 6
consensus : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GA-----TGA-AGA--TAT-------ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGAATGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-N-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
Reference ( family-1828 ) : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GA-----TGA-AGA--TAT-------ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGAATGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-N-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
gi|1 : TAT-AATTAAAACA-TGTGATTT--T--TTCACTGTTCTTT--ATTAAATGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCCAAA-C---AATCGAATTT--A-T---TGGT---C-TGTATAAATG----ACTATGAAGGATAAGA-AGGTG-GA-----TGA-A-A--TAT-------ACAG--G-TTGG---T--AATATG-ATATGTCTAGAGT-TGTGGGATTGAAAGGTATTTG-ATTG-ATCAAT--GT-TG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-AT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCAA-G-AA-CTTGCAC--AAAATGTGTATAGG-AGGACC-TG-T-AG-CGTT--ACGGTCAGA-CAAAAATAT---AAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTTATAG
gi|10 : ATTAAAACA-TTCAATTT--TTTTTCACTGATCTTC--ATTAAAAATTtagaaattattttctaaagaaattagaaaaggcaataga
gi|11 : aacaaaaaataatttaggaatgacatccatggcaagagctggcaccgttatagaaaaaaacccatattttatcatgttttgtcttttaaatcaatacttagtgttcaattctaatgcattttgtgtttcTATCAATTAAAACA-TGCGA-TT--T--TTCACTGGTCTTC--ATTattgaaatgaattaaatgtgcattcggtgcatcaatatgcatttaagttcatttgg
gi|12 : aagaaaaccagagcataagcataaacatcaacacattttgtttcagagcatttttaatcaagaattcttgtattctaatttaatgtattttttaaacaagtgttTAT-AATTAAAACAATTCA--TT--T--TTCACTGTTTTTTTTATTAAAAGTTCAgtaatgaatgtgcattcaatatgcatttaagttcaattggtcgctctttgggtccttttgagtaaatcgacgcgc
gi|13 : taaaatgagtgcaacaccagggcataaagttagaagcataaacataatcacattttggagcatttttaatcaagacttagtattctattctaatgaattttttaaaaagtgtttGTCTAGAATGTA-TGGGATCAAAGGTATTTG-ATTG-ACCA----GC-TGAG---AA--AG------GTAGA------AT-A-C-C-AT-CA-CCC-GT-GCG-CA-CAAAATCA-GCGCAATT-AA-ATTGCACGAAGAATGTCTATGGG-GAGACC-TG-T-AG--GTC--ATGGTCAGA-CAA-----------------AA-CGCTA-CAGTTCT-CAGCTAttgaaatgaattcaatgtttggctgtccatttgagtcttttgggtaaatagatgt
gi|14 : taGTCTAGAATGTA-TGGGAT-AAAGGTATT-G-ATTG-ACCAAT--GC-TG-G---AA--AG------GGAGA-----T-C-A-CAC-AT-CACACC-GT-GCG-CA--AAAATCA-GCGCAA-TTAA-ATTGCACCAAGAATGTCTATGGGGAGGACC-TG-T-AG--GTC--ATG-TCAGA-CAAA-------------CGTAA-----A-CAGTTCTGCAGCtt
gi|16 : GG-AGAAC--TG-T-AG-CATTTAGTGATCAGAACAAAAATTT--GAAAACCATAA-CGCTC-CAGTTCTGC-GCTAat
gi|17 : atACCATAA-CGCTA-CAGTTCTGCAGCTAGTCCATAGatatgaaaccgcagcatttataattaaag
gi|18 : ACCATAA-CGCTA-CAGTTCTGCAGCTATGTCATAcctgcttcgattaaaaa
gi|2 : TAT-AGTTAAATCA-TGCGATTTCTT--TTTACTGTTCTTT--ATTAACAGTTCA
gi|2 : taatgcattttttaaaaagtgtttATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGAAGGATTAAG-AGGTA-Gttgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|2 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatAAAAATAT--AAAA-CAATAA-CGCTA-CAGTTCTGCAGCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|3 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--T--TTCACTGTTCTTT--ATTAAAAGTTCA
gi|3 : gaaaactgacctggATTCACAA-C---AATCGAGTTT--ACT---TGGT---C-TGTATAGATG----GATATGGAGG-TTAGGGAGGGG-GA-----TTA-AG---TAT-------ACAGCTG-TAGG---A--AAT-TG-ACTCGT-TAAA---TA-GGGAATGAA-GTTATTTA-GATG-GCCAATCCGCGCG-G---AA--AG-G----GAAGAAA---TAC-A-C-C-GTTCA-ACC-GT-GCGGCAGAAAGACTACACGCCA-CCAACATTGCAC--AAAATTGCTATCGG-AGAACC-TG-TTAG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTACCAGTTCTGCAttgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagattcacaacaatcgagtttacttggtctgtatagatggatatggaggttagggagggggattaagtatacagctgtaggaaattgactcgttaaatagggaatgaagttatttagatggccaatccgcgcggaaagggaagaaatacaccgttcaaccgtgcggcagaaagactacacgccaccaacattgcacaaaattgctatcggagaacctgttagcgttatggtcagtcaaaaatataaaaaccataacgctaccagttctgcatc
gi|4 : gaaaactgacctggtttcactgttctttattaaaagttcattgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagAATTCAAAA-C---AG-CGAGTCT--A-TAATT--T---CGTGTATA-ACG----AA-ATGGAG-ATTGGG-AGGTG-GA-----TGATAGAATTAT-------ACAG--GTTAGG---TTAAATATT-ATTCGTTTAGAA--TA-GGAGAT------TGTTTA-ACTG-ACCAAT--G--CG-A---CA--AG-T----GGGAGAA---TAC-A---C-GT-CA-ACCTGTCGCG-CGGGAAtc
gi|4 : gaatggcgggAAAAAAACCA-GCGCCA-C-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTA-CATTTCTGCAGCTAtnnnnnnnnnnnnnnnnnnnnnnnnngggaaaaaaaaaccagcgccacaaattgcacaaaatttctatgggaggacctgtagcgttatggtcagtcaaaaatataaaaaccataacgctacatttctgcagctacttgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : gaatggcgggaattcaaaacagcgagtctataatttcgtgtataacgaaatggagattgggaggtggatgatagaattatacaggttaggttaaatattattcgtttagaataggagattgtttaactgaccaatgcgacaagtgggagaatacacgtcaacctgtcgcgcgggaatnnnnnnnnnnnnnnnnnnnnnnnnngggaaAAAAC--TGCGATTT--TG-TTCACTGTTCTTT---TTAACAGTTCActtgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : cgATTCAAAAAC---AATCGAGTTT--A-T---TGG----C-AGTATAGACG----ACT-TGAAGAAATAGG-AGGTG-GA-----TGA-AAA--TAT-------ACAG--G-TTGG---T--AATATA-ATATGTCTAGAAT-TA--GGAATGTAAGGT-TTTGAATTGCACCAAA--GC-CG-G---GACCAGTT----AAAGAAA---TACAA-C-CAAT-CA-ACC-GT-GCG-CAG-AAAATCT-GCGttgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagattcaaaaacaatcgagtttattggcagtatagacgacttgaagaaataggaggtggatgaaaatatacaggttggtaatataatatgtctagaattaggaatgtaaggttttgaattgcaccaaagccgggaccagttaaagaaatacaaccaatcaaccgtgcgcagaaaatctgcg
gi|6 : cgaaaactgcgattttgttcactgttctttttaacagttcattgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGGTTAGG-AGGTG-GA-----TGA-AG---TAT-------ACAG--G-TAGG---T--AAATTG-ATACGTTTAGAAT-TA-GGGAATGAAAGTTATTAG-ACTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-C-AA-ATAGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGGCAGT-CAAAAATATAAAAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTC
gi|7 : ATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGATG----ACTATGGAGGGTTAGG-AGGTG-GA-----TGA-AG---TAT-------ACAG--G-TAGG---T--AAATTG-ACTCGTTTAGAAT-TA-GGGAATGACAGTTATTAG-ACTG-GCCAAT--GC-CG-G---AA--AG-T----GGAAAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAAGCA-GCACCA-G-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAAtacctcaattgtaaatgggaattggatttacaaaagatt
gi|9 : taaatagacgtacccctttaatagatcatctcccgtcatggcaggagTTCAAAA-CCCCAATCGAGTTTTAA-T---TGGTGGAC-AGCTTAGACGTACGACTATGAAGG-TTAGG-AAGTGAGATGTTTTGG-AGA--TACTATTATGACAG--G-TTGGGCTC--AATATGCATAAGTCTAGAATCCA-G-------------TTTG-ATTG-ACCAAT--GC-CG-AAATAA--AG-TTGCGAGAGAAAAGTTAC-ACC-C-GTATA-GCC-GT-GCG-CAGAAGAA---------A-A-AA-ATC----------CTGCCATAGA-AAGACCATGAT-AGTTGTT---------------AAATAT---AAAGCCACAATTACTA-CAGTTCTGCAGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAACAAAAAATAAATTAGGTAAAGAGCCTTGGGGTACGTCCATAGGAAAAAAAGCATATTTTAAATATATCTTTTTTTAAATCAAGAACCTAGTAATTTTATTAATGATGCATCTAATAGTGGTTTTTTCAATTAAAACTTGGCGATTTTTTTCCAACTGAATTATTCAAATAAAAGTTCATTGAAATGATTTCAATGTGGCAATTTTTTGGTGCATTATAAAATTAATCAATATGCATAAAAGTTCATGTAATGACTCGGCCATTGGGTA
Unaligned ( gi|15 ): AAACAAAAGATAAAAATAGGGATTACGTCCATGGCAAGAACTGGGTACTGTTATAGAAAAAAAAACCATATTTCATCAAGTTTTTTCCTTAATTCTCAGAGAAATATGAAACATATAATGTCTCATTGAAATTAATTCAGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 11111 111 1111111 111111 1 111111 111 11 111
lowQualScore : 0 6 3 77 33 77 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 888 66 5 888 888 5 0000 7 5 5 44444 5 999 8888888 77 5 1 444444 5 5 1 0 3 55 6 1 3 0 2 4 4 66 4 4 777 66 888888 1 777 4 4 4 4 8 4 4 4 4 33 2 4 2 666 5 33 4 4 4 4 77 66 0 77 555 1 3 3
lowQualScore : . . . .. .. .. .............................................................................................................................. . ... .. . ... ... . .... . . . ..... . ... ....... .. . . ...... . . . . . .. . . . . . . . .. . . ... .. ...... . ... . . . . . . . . . .. . . . ... . .. . . . . .. .. . .. ... . . .
lowQualScore : 0 7 2 99 66 99 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 888 99 0 888 888 0 6666 0 0 0 33333 7 999 6666666 99 7 0 777777 4 7 0 9 3 66 7 8 9 8 2 4 4 11 4 4 888 11 444444 9 888 4 4 4 4 9 4 4 4 4 88 4 4 5 000 0 88 4 4 4 4 33 11 1 00 000 2 6 6
consensus : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GA-----TGA-AGA--TAT-------ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGAATGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-N-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
Reference ( family-1828 ) : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GA-----TGA-AGA--TAT-------ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGAATGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-N-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
gi|1 : TAT-AATTAAAACA-TGTGATTT--T--TTCACTGTTCTTT--ATTAAATGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCCAAA-C---AATCGAATTT--A-T---TGGT---C-TGTATAAATG----ACTATGAAGGATAAGA-AGGTG-GA-----TGA-A-A--TAT-------ACAG--G-TTGG---T--AATATG-ATATGTCTAGAGT-TGTGGGATTGAAAGGTATTTG-ATTG-ATCAAT--GT-TG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-AT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCAA-G-AA-CTTGCAC--AAAATGTGTATAGG-AGGACC-TG-T-AG-CGTT--ACGGTCAGA-CAAAAATAT---AAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTTATAG
gi|10 : ATTAAAACA-TTCAATTT--TTTTTCACTGATCTTC--ATTAAAAATTtagaaattattttctaaagaaattagaaaaggcaataga
gi|11 : aacaaaaaataatttaggaatgacatccatggcaagagctggcaccgttatagaaaaaaacccatattttatcatgttttgtcttttaaatcaatacttagtgttcaattctaatgcattttgtgtttcTATCAATTAAAACA-TGCGA-TT--T--TTCACTGGTCTTC--ATTattgaaatgaattaaatgtgcattcggtgcatcaatatgcatttaagttcatttgg
gi|12 : aagaaaaccagagcataagcataaacatcaacacattttgtttcagagcatttttaatcaagaattcttgtattctaatttaatgtattttttaaacaagtgttTAT-AATTAAAACAATTCA--TT--T--TTCACTGTTTTTTTTATTAAAAGTTCAgtaatgaatgtgcattcaatatgcatttaagttcaattggtcgctctttgggtccttttgagtaaatcgacgcgc
gi|13 : taaaatgagtgcaacaccagggcataaagttagaagcataaacataatcacattttggagcatttttaatcaagacttagtattctattctaatgaattttttaaaaagtgtttGTCTAGAATGTA-TGGGATCAAAGGTATTTG-ATTG-ACCA----GC-TGAG---AA--AG------GTAGA------AT-A-C-C-AT-CA-CCC-GT-GCG-CA-CAAAATCA-GCGCAATT-AA-ATTGCACGAAGAATGTCTATGGG-GAGACC-TG-T-AG--GTC--ATGGTCAGA-CAA-----------------AA-CGCTA-CAGTTCT-CAGCTAttgaaatgaattcaatgtttggctgtccatttgagtcttttgggtaaatagatgt
gi|14 : taGTCTAGAATGTA-TGGGAT-AAAGGTATT-G-ATTG-ACCAAT--GC-TG-G---AA--AG------GGAGA-----T-C-A-CAC-AT-CACACC-GT-GCG-CA--AAAATCA-GCGCAA-TTAA-ATTGCACCAAGAATGTCTATGGGGAGGACC-TG-T-AG--GTC--ATG-TCAGA-CAAA-------------CGTAA-----A-CAGTTCTGCAGCtt
gi|16 : GG-AGAAC--TG-T-AG-CATTTAGTGATCAGAACAAAAATTT--GAAAACCATAA-CGCTC-CAGTTCTGC-GCTAat
gi|17 : atACCATAA-CGCTA-CAGTTCTGCAGCTAGTCCATAGatatgaaaccgcagcatttataattaaag
gi|18 : ACCATAA-CGCTA-CAGTTCTGCAGCTATGTCATAcctgcttcgattaaaaa
gi|2 : TAT-AGTTAAATCA-TGCGATTTCTT--TTTACTGTTCTTT--ATTAACAGTTCA
gi|2 : taatgcattttttaaaaagtgtttATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGAAGGATTAAG-AGGTA-Gttgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|2 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatAAAAATAT--AAAA-CAATAA-CGCTA-CAGTTCTGCAGCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|3 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--T--TTCACTGTTCTTT--ATTAAAAGTTCA
gi|3 : gaaaactgacctggATTCACAA-C---AATCGAGTTT--ACT---TGGT---C-TGTATAGATG----GATATGGAGG-TTAGGGAGGGG-GA-----TTA-AG---TAT-------ACAGCTG-TAGG---A--AAT-TG-ACTCGT-TAAA---TA-GGGAATGAA-GTTATTTA-GATG-GCCAATCCGCGCG-G---AA--AG-G----GAAGAAA---TAC-A-C-C-GTTCA-ACC-GT-GCGGCAGAAAGACTACACGCCA-CCAACATTGCAC--AAAATTGCTATCGG-AGAACC-TG-TTAG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTACCAGTTCTGCAttgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagattcacaacaatcgagtttacttggtctgtatagatggatatggaggttagggagggggattaagtatacagctgtaggaaattgactcgttaaatagggaatgaagttatttagatggccaatccgcgcggaaagggaagaaatacaccgttcaaccgtgcggcagaaagactacacgccaccaacattgcacaaaattgctatcggagaacctgttagcgttatggtcagtcaaaaatataaaaaccataacgctaccagttctgcatc
gi|4 : gaaaactgacctggtttcactgttctttattaaaagttcattgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagAATTCAAAA-C---AG-CGAGTCT--A-TAATT--T---CGTGTATA-ACG----AA-ATGGAG-ATTGGG-AGGTG-GA-----TGATAGAATTAT-------ACAG--GTTAGG---TTAAATATT-ATTCGTTTAGAA--TA-GGAGAT------TGTTTA-ACTG-ACCAAT--G--CG-A---CA--AG-T----GGGAGAA---TAC-A---C-GT-CA-ACCTGTCGCG-CGGGAAtc
gi|4 : gaatggcgggAAAAAAACCA-GCGCCA-C-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTA-CATTTCTGCAGCTAtnnnnnnnnnnnnnnnnnnnnnnnnngggaaaaaaaaaccagcgccacaaattgcacaaaatttctatgggaggacctgtagcgttatggtcagtcaaaaatataaaaaccataacgctacatttctgcagctacttgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : gaatggcgggaattcaaaacagcgagtctataatttcgtgtataacgaaatggagattgggaggtggatgatagaattatacaggttaggttaaatattattcgtttagaataggagattgtttaactgaccaatgcgacaagtgggagaatacacgtcaacctgtcgcgcgggaatnnnnnnnnnnnnnnnnnnnnnnnnngggaaAAAAC--TGCGATTT--TG-TTCACTGTTCTTT---TTAACAGTTCActtgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : cgATTCAAAAAC---AATCGAGTTT--A-T---TGG----C-AGTATAGACG----ACT-TGAAGAAATAGG-AGGTG-GA-----TGA-AAA--TAT-------ACAG--G-TTGG---T--AATATA-ATATGTCTAGAAT-TA--GGAATGTAAGGT-TTTGAATTGCACCAAA--GC-CG-G---GACCAGTT----AAAGAAA---TACAA-C-CAAT-CA-ACC-GT-GCG-CAG-AAAATCT-GCGttgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagattcaaaaacaatcgagtttattggcagtatagacgacttgaagaaataggaggtggatgaaaatatacaggttggtaatataatatgtctagaattaggaatgtaaggttttgaattgcaccaaagccgggaccagttaaagaaatacaaccaatcaaccgtgcgcagaaaatctgcg
gi|6 : cgaaaactgcgattttgttcactgttctttttaacagttcattgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGGTTAGG-AGGTG-GA-----TGA-AG---TAT-------ACAG--G-TAGG---T--AAATTG-ATACGTTTAGAAT-TA-GGGAATGAAAGTTATTAG-ACTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-C-AA-ATAGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGGCAGT-CAAAAATATAAAAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTC
gi|7 : ATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGATG----ACTATGGAGGGTTAGG-AGGTG-GA-----TGA-AG---TAT-------ACAG--G-TAGG---T--AAATTG-ACTCGTTTAGAAT-TA-GGGAATGACAGTTATTAG-ACTG-GCCAAT--GC-CG-G---AA--AG-T----GGAAAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAAGCA-GCACCA-G-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAAtacctcaattgtaaatgggaattggatttacaaaagatt
gi|9 : taaatagacgtacccctttaatagatcatctcccgtcatggcaggagTTCAAAA-CCCCAATCGAGTTTTAA-T---TGGTGGAC-AGCTTAGACGTACGACTATGAAGG-TTAGG-AAGTGAGATGTTTTGG-AGA--TACTATTATGACAG--G-TTGGGCTC--AATATGCATAAGTCTAGAATCCA-G-------------TTTG-ATTG-ACCAAT--GC-CG-AAATAA--AG-TTGCGAGAGAAAAGTTAC-ACC-C-GTATA-GCC-GT-GCG-CAGAAGAA---------A-A-AA-ATC----------CTGCCATAGA-AAGACCATGAT-AGTTGTT---------------AAATAT---AAAGCCACAATTACTA-CAGTTCTGCAGa
blockSeqs : C A T CT TT TT A CCC TA C AAT GGA G TACG A G A TGTTT T AAT TATTATG CT T A GCTC A C T G T C A G T A C CC G A AAT CC TTGCG A AGT A C A A T C T C G GA T C A TT C GA G A A T TT TA AA AAA A T C
blockSeqs : . . T . G . . . . . . . . . A . . . . A . . . A TTA A . T G T G A G T . . . . . . . TT A . . . . . A . . . . GG T . A TT . CA . . . . C . A G A . .
blockSeqs : . . T . . . . . . . . . . . A . . . . A . . . T A T . A C G G A T T . . . . . . . G A . . . . . . . . . . AA C . C CC . . . . . . C . A A A . .
blockSeqs : . . . . . . . . . . . . . G . . . . . . . . A T T . A . G G A G T . . . . . . . T A . . . . . . . . . . GA C . C C . . . . . . C . T A A . .
blockSeqs : . . . . . . . . . . . . . G . . . . . . . . A T A . T . G G A T A . . . . . . . T A . . . . . . . . . . GA T . C C . . . . . . C . T A A . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T T . . A . G . . T A . . . . . . . T A . . . . . . . . . . GA T . C G . . . . . . C . T . A . .
blockSeqs : . . . . . . . . . . . . G . . . T . . . . . . . . . . . . . . . . . . . C G . . A . . . . . . . . T . G . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : A** G* A**
originalCons : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GA-----TGA-AGA--TAT-------ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGAATGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-N-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
finalCons : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GA-----TGA-AGA--TAT-------ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TAG-GGAATGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-N-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATATA--AAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAACAAAAAATAAATTAGGTAAAGAGCCTTGGGGTACGTCCATAGGAAAAAAAGCATATTTTAAATATATCTTTTTTTAAATCAAGAACCTAGTAATTTTATTAATGATGCATCTAATAGTGGTTTTTTCAATTAAAACTTGGCGATTTTTTTCCAACTGAATTATTCAAATAAAAGTTCATTGAAATGATTTCAATGTGGCAATTTTTTGGTGCATTATAAAATTAATCAATATGCATAAAAGTTCATGTAATGACTCGGCCATTGGGTA
Unaligned ( gi|15 ): AAACAAAAGATAAAAATAGGGATTACGTCCATGGCAAGAACTGGGTACTGTTATAGAAAAAAAAACCATATTTCATCAAGTTTTTTCCTTAATTCTCAGAGAAATATGAAACATATAATGTCTCATTGAAATTAATTCAGTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 11111 111 1111111 111111 1 111111 111 11 111
lowQualScore : 0 6 3 77 33 77 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 888 66 5 888 888 5 0000 7 5 5 44444 5 999 8888888 77 5 1 444444 5 5 1 0 3 55 6 1 3 0 2 4 4 66 4 4 777 66 888888 1 777 4 4 4 4 8 4 4 4 4 33 2 4 2 666 5 33 4 4 4 4 77 66 0 77 555 1 3 3
lowQualScore : . . . .. .. .. .............................................................................................................................. . ... .. . ... ... . .... . . . ..... . ... ....... .. . . ...... . . . . . .. . . . . . . . .. . . ... .. ...... . ... . . . . . . . . . .. . . . ... . .. . . . . .. .. . .. ... . . .
lowQualScore : 0 7 2 99 66 99 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 888 99 0 888 888 0 6666 0 0 0 33333 7 999 6666666 99 7 0 777777 4 7 0 9 3 66 7 8 9 8 2 4 4 11 4 4 888 11 444444 9 888 4 4 4 4 9 4 4 4 4 88 4 4 5 000 0 88 4 4 4 4 33 11 1 00 000 2 6 6
consensus : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GA-----TGA-AGA--TAT-------ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGAATGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-N-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
Reference ( family-1828 ) : TAT-AATTAAAACA-TGCGATTT--T--TTCACTGTTCTTT--ATTAAAAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGATTAGG-AGGTG-GA-----TGA-AGA--TAT-------ACAG--G-TNGG---T--AATATG-ATNCGTCTAGAAT-TA-GGGAATGAAAGGTATTTG-ATTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-N-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGN-CAAAAATAT--AAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTCATAG
gi|1 : TAT-AATTAAAACA-TGTGATTT--T--TTCACTGTTCTTT--ATTAAATGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCCAAA-C---AATCGAATTT--A-T---TGGT---C-TGTATAAATG----ACTATGAAGGATAAGA-AGGTG-GA-----TGA-A-A--TAT-------ACAG--G-TTGG---T--AATATG-ATATGTCTAGAGT-TGTGGGATTGAAAGGTATTTG-ATTG-ATCAAT--GT-TG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-AT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCAA-G-AA-CTTGCAC--AAAATGTGTATAGG-AGGACC-TG-T-AG-CGTT--ACGGTCAGA-CAAAAATAT---AAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTTATAG
gi|10 : ATTAAAACA-TTCAATTT--TTTTTCACTGATCTTC--ATTAAAAATTtagaaattattttctaaagaaattagaaaaggcaataga
gi|11 : aacaaaaaataatttaggaatgacatccatggcaagagctggcaccgttatagaaaaaaacccatattttatcatgttttgtcttttaaatcaatacttagtgttcaattctaatgcattttgtgtttcTATCAATTAAAACA-TGCGA-TT--T--TTCACTGGTCTTC--ATTattgaaatgaattaaatgtgcattcggtgcatcaatatgcatttaagttcatttgg
gi|12 : aagaaaaccagagcataagcataaacatcaacacattttgtttcagagcatttttaatcaagaattcttgtattctaatttaatgtattttttaaacaagtgttTAT-AATTAAAACAATTCA--TT--T--TTCACTGTTTTTTTTATTAAAAGTTCAgtaatgaatgtgcattcaatatgcatttaagttcaattggtcgctctttgggtccttttgagtaaatcgacgcgc
gi|13 : taaaatgagtgcaacaccagggcataaagttagaagcataaacataatcacattttggagcatttttaatcaagacttagtattctattctaatgaattttttaaaaagtgtttGTCTAGAATGTA-TGGGATCAAAGGTATTTG-ATTG-ACCA----GC-TGAG---AA--AG------GTAGA------AT-A-C-C-AT-CA-CCC-GT-GCG-CA-CAAAATCA-GCGCAATT-AA-ATTGCACGAAGAATGTCTATGGG-GAGACC-TG-T-AG--GTC--ATGGTCAGA-CAA-----------------AA-CGCTA-CAGTTCT-CAGCTAttgaaatgaattcaatgtttggctgtccatttgagtcttttgggtaaatagatgt
gi|14 : taGTCTAGAATGTA-TGGGAT-AAAGGTATT-G-ATTG-ACCAAT--GC-TG-G---AA--AG------GGAGA-----T-C-A-CAC-AT-CACACC-GT-GCG-CA--AAAATCA-GCGCAA-TTAA-ATTGCACCAAGAATGTCTATGGGGAGGACC-TG-T-AG--GTC--ATG-TCAGA-CAAA-------------CGTAA-----A-CAGTTCTGCAGCtt
gi|16 : GG-AGAAC--TG-T-AG-CATTTAGTGATCAGAACAAAAATTT--GAAAACCATAA-CGCTC-CAGTTCTGC-GCTAat
gi|17 : atACCATAA-CGCTA-CAGTTCTGCAGCTAGTCCATAGatatgaaaccgcagcatttataattaaag
gi|18 : ACCATAA-CGCTA-CAGTTCTGCAGCTATGTCATAcctgcttcgattaaaaa
gi|2 : TAT-AGTTAAATCA-TGCGATTTCTT--TTTACTGTTCTTT--ATTAACAGTTCA
gi|2 : taatgcattttttaaaaagtgtttATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGAAGGATTAAG-AGGTA-Gttgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|2 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatAAAAATAT--AAAA-CAATAA-CGCTA-CAGTTCTGCAGCTcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaaaatataaaacaataacgctacagttctgcagct
gi|3 : taatgcattttttaaaaagtgttttatagttaaatcatgcgatttctttttactgttctttattaacagttcattgaaatgaattcaatgtggattttgctgcattcgatatgcatttaagttcatttggatgtccatttgggtaaatagaggtacccttttaataggctatcaccgtcatggcaggatattcaaaacaatcgagtttattggtctgtatagacgactatgaaggattaagaggtagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--T--TTCACTGTTCTTT--ATTAAAAGTTCA
gi|3 : gaaaactgacctggATTCACAA-C---AATCGAGTTT--ACT---TGGT---C-TGTATAGATG----GATATGGAGG-TTAGGGAGGGG-GA-----TTA-AG---TAT-------ACAGCTG-TAGG---A--AAT-TG-ACTCGT-TAAA---TA-GGGAATGAA-GTTATTTA-GATG-GCCAATCCGCGCG-G---AA--AG-G----GAAGAAA---TAC-A-C-C-GTTCA-ACC-GT-GCGGCAGAAAGACTACACGCCA-CCAACATTGCAC--AAAATTGCTATCGG-AGAACC-TG-TTAG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTACCAGTTCTGCAttgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagattcacaacaatcgagtttacttggtctgtatagatggatatggaggttagggagggggattaagtatacagctgtaggaaattgactcgttaaatagggaatgaagttatttagatggccaatccgcgcggaaagggaagaaatacaccgttcaaccgtgcggcagaaagactacacgccaccaacattgcacaaaattgctatcggagaacctgttagcgttatggtcagtcaaaaatataaaaaccataacgctaccagttctgcatc
gi|4 : gaaaactgacctggtttcactgttctttattaaaagttcattgaaatgattgcaggtgttttgctgcgacttcgatacgatttaaatattcgttggatgtcgaattgtatagacgcacccttataggcatatcccgtctggcagcgagAATTCAAAA-C---AG-CGAGTCT--A-TAATT--T---CGTGTATA-ACG----AA-ATGGAG-ATTGGG-AGGTG-GA-----TGATAGAATTAT-------ACAG--GTTAGG---TTAAATATT-ATTCGTTTAGAA--TA-GGAGAT------TGTTTA-ACTG-ACCAAT--G--CG-A---CA--AG-T----GGGAGAA---TAC-A---C-GT-CA-ACCTGTCGCG-CGGGAAtc
gi|4 : gaatggcgggAAAAAAACCA-GCGCCA-C-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAATAT--AAAAACCATAA-CGCTA-CATTTCTGCAGCTAtnnnnnnnnnnnnnnnnnnnnnnnnngggaaaaaaaaaccagcgccacaaattgcacaaaatttctatgggaggacctgtagcgttatggtcagtcaaaaatataaaaaccataacgctacatttctgcagctacttgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : gaatggcgggaattcaaaacagcgagtctataatttcgtgtataacgaaatggagattgggaggtggatgatagaattatacaggttaggttaaatattattcgtttagaataggagattgtttaactgaccaatgcgacaagtgggagaatacacgtcaacctgtcgcgcgggaatnnnnnnnnnnnnnnnnnnnnnnnnngggaaAAAAC--TGCGATTT--TG-TTCACTGTTCTTT---TTAACAGTTCActtgctctcctattctgactttcgggtttttatttcttcagtttataatctttttatgtatgaaacaagacataaccatacaaaaca
gi|5 : cgATTCAAAAAC---AATCGAGTTT--A-T---TGG----C-AGTATAGACG----ACT-TGAAGAAATAGG-AGGTG-GA-----TGA-AAA--TAT-------ACAG--G-TTGG---T--AATATA-ATATGTCTAGAAT-TA--GGAATGTAAGGT-TTTGAATTGCACCAAA--GC-CG-G---GACCAGTT----AAAGAAA---TACAA-C-CAAT-CA-ACC-GT-GCG-CAG-AAAATCT-GCGttgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagattcaaaaacaatcgagtttattggcagtatagacgacttgaagaaataggaggtggatgaaaatatacaggttggtaatataatatgtctagaattaggaatgtaaggttttgaattgcaccaaagccgggaccagttaaagaaatacaaccaatcaaccgtgcgcagaaaatctgcg
gi|6 : cgaaaactgcgattttgttcactgttctttttaacagttcattgaaatgaaattcaatgtgcatcttttctgcattcgatatgcatttaaaaaagtcgtttggatgtccattgggtaaatagacgcgtccctttcaataggtctggctgtcgaaatggcaggagTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGACG----ACTATGGAGGGTTAGG-AGGTG-GA-----TGA-AG---TAT-------ACAG--G-TAGG---T--AAATTG-ATACGTTTAGAAT-TA-GGGAATGAAAGTTATTAG-ACTG-ACCAAT--GC-CG-G---AA--AG-T----GGAGAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAATCA-GCGCCA-C-AA-ATAGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGGCAGT-CAAAAATATAAAAAAACCATAA-CGCTA-CAGTTCTGCAGCTAGGTC
gi|7 : ATTCAAAA-C---AATCGAGTTT--A-T---TGGT---C-TGTATAGATG----ACTATGGAGGGTTAGG-AGGTG-GA-----TGA-AG---TAT-------ACAG--G-TAGG---T--AAATTG-ACTCGTTTAGAAT-TA-GGGAATGACAGTTATTAG-ACTG-GCCAAT--GC-CG-G---AA--AG-T----GGAAAAA---TAC-A-C-C-GT-CA-ACC-GT-GCG-CAGAAAAAGCA-GCACCA-G-AA-ATTGCAC--AAAATTTCTATGGG-AGGACC-TG-T-AG-CGTT--ATGGTCAGT-CAAAAAtacctcaattgtaaatgggaattggatttacaaaagatt
gi|9 : taaatagacgtacccctttaatagatcatctcccgtcatggcaggagTTCAAAA-CCCCAATCGAGTTTTAA-T---TGGTGGAC-AGCTTAGACGTACGACTATGAAGG-TTAGG-AAGTGAGATGTTTTGG-AGA--TACTATTATGACAG--G-TTGGGCTC--AATATGCATAAGTCTAGAATCCA-G-------------TTTG-ATTG-ACCAAT--GC-CG-AAATAA--AG-TTGCGAGAGAAAAGTTAC-ACC-C-GTATA-GCC-GT-GCG-CAGAAGAA---------A-A-AA-ATC----------CTGCCATAGA-AAGACCATGAT-AGTTGTT---------------AAATAT---AAAGCCACAATTACTA-CAGTTCTGCAGa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAACAAAAAATAAATTAGGTAAAGAGCCTTGGGGTACGTCCATAGGAAAAAAAGCATATTTTAAATATATCTTTTTTTAAATCAAGAACCTAGTAATTTTATTAATGATGCATCTAATAGTGGTTTTTTCAATTAAAACTTGGCGATTTTTTTCCAACTGAATTATTCAAATAAAAGTTCATTGAAATGATTTCAATGTGGCAATTTTTTGGTGCATTATAAAATTAATCAATATGCATAAAAGTTCATGTAATGACTCGGCCATTGGGTA
Unaligned ( gi|15 ): AAACAAAAGATAAAAATAGGGATTACGTCCATGGCAAGAACTGGGTACTGTTATAGAAAAAAAAACCATATTTCATCAAGTTTTTTCCTTAATTCTCAGAGAAATATGAAACATATAATGTCTCATTGAAATTAATTCAGTT