lowQualScore : 2222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 0000000000000000000000000000000 1111 666666 11 1111 1111 11111 77777 1 1 2222222 33333333333 11111 4444444444444444444444 2222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 1111 222222 111
lowQualScore : 6 6 5 3 0000000000000000000000000000000 3 0 8 8 4444 7 000000 888 88 0000 5 2 6666 00000 66666 1 9999 0 1 5 4444444 66 0 5 00000000000 5 3 99999 1 6666666666666666666666 0 0000000 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 2 0000 333333 000 6
lowQualScore : . . . . ............................... . . . . .... . ...... ... .. .... . . .... ..... ..... . .... . . . ....... .. . . ........... . . ..... . ...................... . ....... ................................................................................................................................. . . .... ...... ... .
lowQualScore : 0 0 0 0 7777777777777777777777777777777 5 2 2 0 2222 8 222222 000 55 6666 0 5 2222 22222 00000 9 4444 8 1 0 8888888 44 1 1 00000000000 0 4 44444 7 9999999999999999999999 7 0000000 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 2 6666 111111 333 0
consensus : TCGGGTCGGGTCGGTNCAGGATT------TTTA-ATTCNAGTATTCAGGTTCG-GTATTTCGNTTCGAGTCAAAAACCGTTATTCGTA----TTTTGTTACAATATAATAACTC-----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACG---TCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTCAAN------AT-AAGTGTCTNGTCATTGATGATATTG-ATGCTGTGGC----NTATTTTAAATGT------GTC------T-ATTTTGTCC-----ACAATGACA-T-------AAATTAA-------TTAA-----GC-AAATTTAGATTTTG-----ACGCCATNTT----G----------TTTC---T--AA-----------T---A-AAA-------G-AC-------CCGAACCGAAATCCGGA----AT------CGGTTTTC-GGTTATTTCGGGTACCCGTTGCA
Reference ( gi|4 ) : TCGAGTCGGGCCATTTCAGGATTGAGAAATTCGCGTTTGAGTATTTCGGTTCGCGTATTTCGTTTCGAGTTAAAAACCTTTATTTGTA----TTTTGTTACAATATAATAACTCA-CATGCAG--ATATATGGACT----CTGGT-TTAGAT---TTGACA---TCCATACTAGAAACATGCACCATTGCC----ACTTTTACTCGTTTCCATTCCATGGTTTCAAG------AT-AAGTGTCTAGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTATATAT------GTC------T-ATTTTGTCC-----GCAATGACA-C-------AAATT---------TTAA-----AT-AACTTGAGATTTTG-----ACGCCATCTT----G----------TTTC---T--AA-----------T---------------G-AC-------CCGAACC-AAATCCGGA----AT------CGGTTTTC-GATTATCTCGGGTACCCGTTGCA
gi|1 : TTGGGTCGGATCAGTGCAGGATT------------TTTTA--ATTCAGGTTTG-GTATTTCAGTTTGGGTCAAAAACCTTTATTCATA----TTTTGTAACAGTATAATAACT-----GGCAG----ATATGGACTTCCGTTAGTCTTAGACTTATTAACA---TGTATACCAGAAACAT----CTTTGCC----ACTTCTACATGATTCAATTCCTTGCTTTCAAATTGAATAT-AAGTGTATCGT---------TATTG-ATGCTGTGGC----TTACTCTA-AT-T------GTCT-----T-ATTTTGTCC-----ACGATGACA-T-------CAATTAATCA----TTGACAAGCAA-AATTT-AGATTTTG-----ACACCATCCTCTCAGACC-------TCTC---TCAAA-----------TAATACAAACACCGCAG-AC-------CTGAACTGAAATCCGGA----AT------C
gi|8 : aaaaaaaaaTCAGGTCGGGTCGGTTCAGGATT------TTTA-ATTCAAGTA---CGG-----GTATTTCGTTTCGAGTCAGAGGCCATTATTTGTA----GTTTATTACAATATATTAACT-------CAA--AGATATGGACT----CTGGT-TTTGAC---TTTACA---TTCATATTAGA---AT-CAACATT--------------CTCGTTTCCATTCCATGTTTTCAAC------AT----TGTCTCGTCATCGATGATATTG-GGACTGTccgactagattaatgcataatacgacccgtatttttctgttattttgggtacccgttgcagact
gi|11 : aatttTATTCAGGTTCGAGTATATCGATTCGGGTCAGAAACAATTATTCGTAATATTTTTGTTACAATATA-----TCAACACGCAGCTATGTATAG-------CTGGT-ATAGA--------------CTGTACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTTCATTTCATGCTTCCAA
gi|5 : taggatttattTACTTTGTTTGCAGTATAAAACCATGATTTGTA----TTTTGTTACAATACATTAACTC-----GCAA--ATAT--GGACT----CCGAT-TTAGAC---TTGGCA---CCCATACTAGAAACAT----CATTACCACATACTTCTACTCGTTTCAATTCCATGCTTTCAAT------AC-AAG-----AGTC-----------TG-ATGCTGTAGT----TTGTTCTAATTGT------GTC------T-ATTTTGTCA-----ATAATAACATC-------AA-------------TAA-----AC-AAATTTAGATTTTGATTTTACACCATCTT----G----------TTTC---T--AA-----------T---------------A-AT-------ACAAA-C-A---CCGG-----AT------CGt
gi|2 : atgattcctatataccccatAATCAAAAACCGTTATTTGTA----TTTGGTT-CAATGTAATAACTCA-CA----G--ATGT--GGGTT----CTGAT-TTA--C---TTGATG---TCCATACTAGAAACAT----CATTTCC----ACTTCTACTCATTTCCATTCCAT-GTTTCAAT------GT-AAATGTCTCGTCATTGACGATAATGAATTTTCTGGC-----TATTTAAAATG-------GTC--------GTTTT-TCCATTTAGCAAT-------------AAATT------------A-----GC-AAATTTAGATTTTG-----ATGCCATGTT----GTTTAAACAGATTTC---T--AATAATAACAATCT---------------G-AC-------CCTAACCGAAATCTTGA----Aaaaccaaaataatggaacccaacccgacccgaacaacacaactcgcg
gi|3 : ggttctaaaataaatctgaaaattttcaagtcaagttggttcaggatttttaattcaggttaaAAAAACTTTTCTTTATA----TTATGTTACATTATAAAAACT-----TGCAG--GTGT--GGACT----CTGGT-TTA-AT---GTAA--------ATATTAGAAACAT----CATTGCC----ACTTCCACTTGTTTC--TTCCATGCTTTCGAC------AT-GAGTGTCTAGTCAT--A-AATATCA-ATGCCGTGGC----ACATTTTAAATGT------GTC------T-ATTTTGCCA-----ACAATGACA-T-------TAATTAACAACAAATCAA-----GTGAAATTTAAATTTTG-----ACGGCAAGTT----G----------TTTCTCGT--AA-----------TACAAAAAAATG----G-AC-------CCGAATCGAAACCCAGA----AT------aatagattcaaacatgccctgaacaatgaacccaagattttctgttatttagggtacatgtcgcagcccta
gi|14 : ttctgttcaggtctattcagataaattaagaatcaGCAG--ACGT--GGACT----CTGGT-TTAGAC---TTGACC---TCCGTACTAGAAACA-G---CATTGTC----ACTT---CTCGTTTCCATTCCATG--TTTAAA------AT-aatgaaatcaaacccacccaaaaaaacacgacccacagttttcggttatttctggtatccattgcagccct
gi|6 : atcatgtcaatactcATATGGACT----CTGGT-TTAGAC---TTGACA---TCCATATTAGAAACA---A-CATTGCC----ACTCCTAATCGTTTCCA-TCCATGTTTTCAAT------ATCAAGTGTCGTGTCATT-------------------GT----CTATTT------T------GTC------C-AT--------------AATGACA-------------T---------GTGA-----A--AATTT-AGAATTCG-----ATGCCTTCTT----G----------GTTC---T--AA-----------T---------------A-ATAGAAACACTGAACCTGAATCCGGA----AT------
gi|10 : taactaaaaa---TTGACGAAGTCTATAGGAGAACCAT----CACTACC----ACTTCTACTTATTTCCATTCCATGCTTTC--------------------AGTCCTTAATATTATTG-ATCTTGTGGT----GTATTTTAGATATTACATAGTCTGTCATT-GTTTTGTCC-----ACAGTGACA-aatggatctgaactcaatccaaacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|7 : gttattggttacataatgattattcgcggacgATGCTTTCAAA------AT-AAGTGTCTGGTCACTGATGAATTTG-ACACTGTGGCTTAATTATTTTAGATGTGA----GTA------TGATTTTGTCC-----AAAATGACA-TCAATAAAAAATTAA-------CTAA-----GCGAAATTTAGATTTTG-----ACGCCATGTT----C----------TTTC---T--AA-----------TCATACAAACACCA--G-AC-------CTGGACCAAAATCCAGA----Atca
gi|6 : cta---T--AA-----------T---------------GGAT-------CTGAACT-CAATCCAAACAACATGACCCGCAGTTTT--GGTTATTTCGGGTACACGTTGCAaaattgcagtcctattgactatgatgcataaaacagataacccata
gi|13 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataatagaaacactgaacctgaatccggaaA-----------T---------------G-AC-------CCGAACA-AAAT----A----ATTTG---TGGCGTTCAGTTTATTTGTGGTACCTGCTGCAgcccta
gi|3 : atgccatgttctttagaaccagatccgaactgaaatctggaatggaaccgaac------CAGTTTTC-GGTTATTTCTGGTATCCATTGCAgccctagg
gi|15 : ttctgttcaggtctattcagataaattaagaatcaaaaaacttttctttatattatgttacattataaaaacttgcaggtgtggactctggtttaatgtaaatattagaaacatcattgccacttccacttgtttcttccatgctttcgacatgagtgtctagtcataaatatcaatgccgtggcacattttaaatgtgtctattttgccaacaatgacattaattaacaacaaatcaagtgaaatttaaattttgacggcaagttgtttctcgtaatacaaaaaaatggacccgaatcgaaacccagaataatgaaatcaaacccacccaaaaaaacacgaccca------CAGTTCTC-GATTATTTTGGA-ACCCGTTGCAgccct
gi|9 : caaaaagcagttttgaactgaaattttgaatgatgcgactctacaatatgacccgGGTTTTC-TGTTATTTCGGGTATCTGTTGCA
gi|1 : ctatgcaaaatggtgttttgtctgcgattgtgtatttcaactgaaatcaatccacaatttacatctttacgctgtgttaaaacagtttagttaaatgataatttaaagatcaggccagacctgaaatctgtaataatggacctatactgtgatccatTTTTC-TGTTATTTTGGGTACCCGTTGCAgccc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTTAAGATTTAGATGCCAAGTTATGTTTCTATTATAAAAATGTAGCCAAACAAAATCTGGGAAATGGGACGGAACTCGATTTGAACAACATGACCTGCGGCTTTCGGTTATTCTTG
Unaligned ( gi|16 ): GAACAACACAACTTGTGGACTTCTGTAATTCTGGGTACCCATTGTAGACCTA
Unaligned ( gi|17 ): CACAACTCATAGTACTTTATTAATTAAATTGTTATTTATGTGTCTTGACAAA
Alignments
lowQualScore : 5555555555555555555555555555555 1111 11111111 111111 111111 11111 22222222222222222 7777777777777777777777777777777777 11111 444444444444444 888888888888888888888888888 1111111
lowQualScore : 1 4444444444444444444444444444444 1 3 1 5 7 1 2222 9999 77777777 8888 4 777 0 3 8888 0 8888 4 000000 2 44 55 888888 4 1 66666 0 11 77777777777777777 5 0000000000000000000000000000000000 44444 1 000000000000000 888 66 333333333333333333333333333 66 8 3 7 6666666 1 5 0
lowQualScore : . ............................... . . . . . . .... .... ........ .... . ... . . .... . .... . ...... . .. .. ...... . . ..... . .. ................. . .................................. ..... . ............... ... .. ........................... .. . . . ....... . . .
lowQualScore : 0 6666666666666666666666666666666 7 3 0 7 6 4 1111 4444 88888888 5555 0 000 7 0 5555 7 5555 3 555555 4 88 99 000000 4 9 55555 4 55 44444444444444444 0 0000000000000000000000000000000000 33333 0 777777777777777 888 99 111111111111111111111111111 11 0 2 3 4444444 4 0 2
consensus : TCGGGTCGGGTCGGTTCAGGATT------TTTA-ATTC-AGTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT------GTC------T-ATTTTGTCCACAATGAC-AT-------NAATT-------AAT------TAAGC-AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTC---T--AAT-----A-ATAC---------A------G--AC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
Reference ( family-1819 ) : TCGGGTCGGGTCGGTNCAGGATT------TTTA-ATTCNAGTATTCAGGTTCG-GTATTTCGNTTCGAGTCAAAAA-CCGTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTNGTCATTGATGATATTG-ATGCTGTGGC----NTATTTTAAATGT------GTC------T-ATTTTGTCCACAATGAC-AT-------AAATT-------AAT------TAAGC-AAATTTAGATTTTG-----ACGCCATNTT----G----------TTTC---T--AAT-----A-A-A----------A------G--AC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
gi|1 : TTGGGTCGGATCAGTGCAGGATT------TTTT-A-------ATTCAGGTTTG-GTATTTCAGTTTGGGTCAAAAA-CCTTTATTCATA----TTTTGTAACAGTATAATAACTG----GCAG--A--TATGGACTTCCGTTAGTCTTAGACTTATTAACATGTATACCAGAAACAT----CTTTGCC----ACTTCTACATGATTCAATTCCTTGCTTTCAAATTGAATAT-AAGTGTATCGT---------TATTG-ATGCTGTGGC----TTACTCTAATTGT------CT-------T-ATTTTGTCCACGATGAC-AT-------CAATT-------AATCATTGACAAGCAAAATTTAGATTTTG-----ACACCATCCTCTCAGACC-------TCTC---TCAAAT-----A-ATACAAACACCGCA------G--AC-CTGAACTGAAATCCGGAAT---C---
gi|1 : aaaaaaaaaTTTTCTG-TTATTTTGGGTACCCGTTGCAccgactagattaatgcataatacgacccgtatttttctgttattttgggtacccgttgcagact
gi|10 : aaaaaaaaattgggtcggatcagtgcaggattttttaattcaggtttggtatttcagtttgggtcaaaaacctttattcatattttgtaacagtataataactggcagatatggacttccgttagtcttagacttattaacatgtataccagaaacatctttgccacttctacatgattcaattccttgctttcaaattgaatataagtgtatcgttattgatgctgtggcttactctaattgtcttattttgtccacgatgacatcaattaatcattgacaagcaaaatttagattttgacaccatcctctcagacctctctcaaataatacaaacaccgcagacctgaactgaaatccggaatcccgactagattaatgcataatacgacccgtatTTGGTTACATAATGATTATTC----GC----------GGAC--------GT-T--GAC-----GAAGTCTATAGGAGAACCAT----CACTACC----ACTTCTACTTATTTCCATTCCATGCTTTC------A--------------GTCCTTAATATTATTG-ATCTTGTGGT----GTATTTTAGATATTACATAGTCTGTCATT-GTTTTGTCCACAGTGAC-AT-------gact
gi|11 : gttaAGGATT------T----ATT----TATTCAGGTTCGAGTATATCGATTCGGGTCAGAAA-CAATTATTCGTAATATTTTTGTTACAATATATCAACAC----GCAGCTATGTATAG-------CTGGT-ATAGAC---T--------GTACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTTCATTTCATGCTTCC------AAca
gi|13 : t------G--AC-CCGAA-CAAAAT----AATTTGT---GGCGTTCAGTTTATTTGTGGTACCTGCTGCAt
gi|14 : atgccatgttctttagaaccagatccgaactgaaatctggaatggaaccgaacatAATA-CTC----GCAG--ACGT--GGACT----CTGGT-TTAGAC---TTGACCTCCGTACTAGAAACAG----CATTGTC----ACTT---CTCGTTTCCATTCCATG--TTT------AAAAT-gccctagg
gi|15 : atcatgtc---C---AGTTCTCGA-TTATTTTGGA-ACCCGTTGCA
gi|2 : caaaaagcagttttgaactgaaattttgaatgatgcgactctacaatatgacccgTCAAGTCAAGTTGGTTCAGGATT------TTTA-ATTC--------AGGTT-----A---------AAATCAAAAA-CCGTTATTTGTA----TTTGGTT-CAATGTAATAACTC----ACAG--ATGT--GGGTT----CTGAT-TTA--C---TTGATGTCCATACTAGAAACAT----CATTTCC----ACTTCTACTCATTTCCATTCCATG-TTTC------AATGT-AAATGTCTCGTCATTGACGATAATGAATTTTCTGGC-----TATTTAAAATG-------GTC--------GTTTT-TCCAT-TTAGCAAT-------AAATT------------------AGC-AAATTTAGATTTTG-----ATGCCATGTT----GTTTAAACAGATTTC---T--AAT-----A-ATA----------ACAATCTG--AC-CCTAACCGAAATCTTGAA
gi|2 : ggttctaaaataaatctgaaaatttC-CTGAAC---AAT---GAAC---CCAAGATTTTCTG-TTATTTAGGGTACATGTCGCAaatagattcaaacatgccctgaacaatgaacccaagattttctgttatttagggtacatgtcgcagcccta
gi|3 : ggttctaaaataaatctgaaaattttcaagtcaagttggttcaggatttttaattcaggttaaaatcaaaaaccgttatttgtatttggttcaatgtaataactcacagatgtgggttctgatttacttgatgtccatactagaaacatcatttccacttctactcatttccattccatgtttcaatgtaaatgtctcgtcattgacgataatgaattttctggctatttaaaatggtcgtttttccatttagcaataaattagcaaatttagattttgatgccatgttgtttaaacagatttctaataataacaatctgaccctaaccgaaatcttgaaaatagattcaaacatgcGAATCAAAAAACTTTTCTTTATA----TTATGTTACATTATAAAAACTT----GCAG--GTGT--GGACT----CTGGT-TTA---------ATGTAAATATTAGAAACAT----CATTGCC----ACTTCCACTTGTTTC--TTCCATGCTTTC------GACAT-GAGTGTCTAGTCAT--A-AATATCA-ATGCCGTGGC----ACATTTTAAATGT------GTC------T-ATTTTGCCAACAATGAC-AT-------TAATTAACAACAAAT------CAAGTGAAATTTAAATTTTG-----ACGGCAAGTT----G----------TTTCTCGT--AAT-----ACA-A----------AAAAATGG--AC-CCGAATCGAAACCCAGAAT---gcccta
gi|3 : ttctgttcaggtctattcagataaattaa---C---AGTTTTCGG-TTATTTCTGGTATCCATTGCAaatgaaatcaaacccacccaaaaaaacacgacccacagttttcggttatttctggtatccattgcagccct
gi|4 : ttctgttcaggtctattcagataaattaagaatcaaaaaacttttctttatattatgttacattataaaaacttgcaggtgtggactctggtttaatgtaaatattagaaacatcattgccacttccacttgtttcttccatgctttcgacatgagtgtctagtcataaatatcaatgccgtggcacattttaaatgtgtctattttgccaacaatgacattaattaacaacaaatcaagtgaaatttaaattttgacggcaagttgtttctcgtaatacaaaaaaatggacccgaatcgaaacccagaataatgaaatcaaacccacccaaaaaaacacgacccaTCGAGTCGGGCCATTTCAGGATTGAGAAATTCGCGTTTGAGTATTTCGGTTCGCGTATTTCGTTTCGAGTTAAAAA-CCTTTATTTGTA----TTTTGTTACAATATAATAACTCACATGCAG--ATATATGGACT----CTGGT-TTAGAT---TTGACATCCATACTAGAAACATGCACCATTGCC----ACTTTTACTCGTTTCCATTCCATGGTTTC------AAGAT-AAGTGTCTAGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTATATAT------GTC------T-ATTTTGTCCGCAATGAC-AC-------AAATT---------T------TAAAT-AACTTGAGATTTTG-----ACGCCATCTT----G----------TTTC---T--AAT---------------------------G--AC-CCGAACC-AAATCCGGAAT---C---GGTTTTCGA-TTATCTCGGGTACCCGTTGCAgccct
gi|5 : TACTTTGTTTGCAGTATAAAA-CCATGATTTGTA----TTTTGTTACAATACATTAACTC----GCAA--AT--ATGGACT----CCGAT-TTAGAC---TTGGCACCCATACTAGAAACAT----CATTACCACATACTTCTACTCGTTTCAATTCCATGCTTTC------AATAC-AAGAGTC----------------TG-ATGCTGTAGT----TTGTTCTAATTGT------GTC------T-ATTTTGTCAATAATAAC-AT-------CAA------------------TAAAC-AAATTTAGATTTTGATTTTACACCATCTT----G----------TTTC---T--AAT-----A-ATAC---------A------A--ACACCGGATCGAAA-CCAAAAT---
gi|6 : atgattcctatataccccatTATGGACT----CTGGT-TTAGAC---TTGACATCCATATTAGAAACAA----CATTGCC----ACTCCTAATCGTTTCCA-TCCATGTTTTC------AATATCAAGTGTCGTGTCATT-------------------GT----CTATTT------T------GTC----------------CATAATGAC-AT-------G---T-------GA-------------AAATTTAGAATTCG-----ATGCCTTCTT----G----------GTTC---T--AAT-----A-A-T----------A------GAAACACTGAACCTGAATCCGGAAT---aatggaacccaacccgacccgaacaacacaactcgcg
gi|6 : taactaaaaaaTTTTGG-TTATTTCGGGTACACGTTGCAaatggatctgaactcaatccaaacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|7 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataatagaaacactgaacctgaatccggaataatggatctgaactcaatccaaacaacatgacccgcagATGCTTTC------AAAAT-AAGTGTCTGGTCACTGATGAATTTG-ACACTGTGGCTTAATTATTTTAGATGTGA----GTA------TGATTTTGTCCAAAATGAC-ATCAATAAAAAATT-------AAC------TAAGCGAAATTTAGATTTTG-----ACGCCATGTT----C----------TTTC---T--AATCATACA-A-ACACC------A------G--AC-CTGGACCAAAATCCAGAAgcccta
gi|8 : ctaTCAGGTCGGGTCGGTTCAGGATT------TTTA-ATTCAAGTAC----G---G-GTATTTCGTTTCGAGTCAGAGG-CCATTATTTGTA----GTTTATTACAATATATTAACTC----AAAG--A--TATGGACT----CTGGT-TTTGAC---TTTACATTCATATTAGAATCAA----CATT--------------CTCGTTTCCATTCCATGTTTTC------AACAT----TGTCTCGTCATCGATGATATTG-GGACTGTaaattgcagtcctattgactatgatgcataaaacagataacccata
gi|9 : aattt---T--AAT-----A-A-T----------G------G--AC-CTATACTGTGATCC---AT-------GGTTTTCTG-TTATTTCGGGTATCTGTTGCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTAAGATTTAGATGCCAAGTTATGTTTCTATTATAAAAATGTAGCCAAACAAAATCTGGGAAATGGGACGGAACTCGATTTGAACAACATGACCTGCGGCTTTCGGTTATTCTTG
Unaligned ( gi|16 ): GAACAACACAACTTGTGGACTTCTGTAATTCTGGGTACCCATTGTAGACCTA
Unaligned ( gi|17 ): CACAACTCATAGTACTTTATTAATTAAATTGTTATTTATGTGTCTTGACAAA
Alignments
lowQualScore : 4444444444444444444 111 1111 11111111 111111 111111 11111 22222222222222222 5555555555555555555555555555555555 11111 444444444444444 5555555555555555555 1111111
lowQualScore : 8 1111111111111111111 777 555 0 3 1 5 1 1 2222 9999 77777777 8888 4 777 0 3 8888 0 8888 4 000000 2 44 77 888888 4 1 55555 0 11 33333333333333333 0 6666666666666666666666666666666666 44444 0 000000000000000 66 0 4 9999999999999999999 8 3 7 6666666 1 5 0
lowQualScore : . ................... ... ... . . . . . . .... .... ........ .... . ... . . .... . .... . ...... . .. .. ...... . . ..... . .. ................. . .................................. ..... . ............... .. . . ................... . . . ....... . . .
lowQualScore : 0 7777777777777777777 222 333 1 3 0 7 0 4 1111 4444 88888888 5555 0 000 7 0 5555 7 5555 3 555555 4 88 44 000000 4 9 99999 4 55 11111111111111111 2 4444444444444444444444444444444444 33333 7 777777777777777 99 1 4 7777777777777777777 0 2 3 4444444 4 0 2
consensus : TCGGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------A-GTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT------GTC------T-ATTTTGTCCACAATGACAT-------CAATT-------AAT------TAAGC-AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTCT--AATAAT-A---------CA--------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
Reference ( family-1819 ) : TCGGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------A-GTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT------GTC------T-ATTTTGTCCACAATGACAT-------NAATT-------AAT------TAAGC-AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTCT--AATAAT-A---------CA--------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
gi|1 : TTGGGTCGGATCA-GTGCAGGATTTTTTA---------------ATTCAGGTTTG-GTATTTCAGTTTGGGTCAAAAA-CCTTTATTCATA----TTTTGTAACAGTATAATAACTG----GCAG--A--TATGGACTTCCGTTAGTCTTAGACTTATTAACATGTATACCAGAAACAT----CTTTGCC----ACTTCTACATGATTCAATTCCTTGCTTTCAAATTGAATAT-AAGTGTATCGT---------TATTG-ATGCTGTGGC----TTACTCTAATTGT------CT-------T-ATTTTGTCCACGATGACAT-------CAATT-------AATCATTGACAAGCAAAATTTAGATTTTG-----ACACCATCCTCTCAGACC-------TCTCTCAAATAAT-ACAAACACCGCA--------GAC-CTGAACTGAAATCCGGAAT---C---
gi|1 : aaaaaaaaaTTTTCTG-TTATTTTGGGTACCCGTTGCAccgactagattaatgcataatacgacccgtatttttctgttattttgggtacccgttgcagact
gi|10 : aaaaaaaaattgggtcggatcagtgcaggattttttaattcaggtttggtatttcagtttgggtcaaaaacctttattcatattttgtaacagtataataactggcagatatggacttccgttagtcttagacttattaacatgtataccagaaacatctttgccacttctacatgattcaattccttgctttcaaattgaatataagtgtatcgttattgatgctgtggcttactctaattgtcttattttgtccacgatgacatcaattaatcattgacaagcaaaatttagattttgacaccatcctctcagacctctctcaaataatacaaacaccgcagacctgaactgaaatccggaatcccgactagattaatgcataatacgacccgtatTTGGTTACATAATGATTATTC----GC----------GGAC--------GT-T--GAC-----GAAGTCTATAGGAGAACCAT----CACTACC----ACTTCTACTTATTTCCATTCCATGCTTTC------A--------------GTCCTTAATATTATTG-ATCTTGTGGT----GTATTTTAGATATTACATAGTCTGTCATT-GTTTTGTCCACAGTGACAT-------CAgact
gi|11 : gttaAGGATTT---A-TT-----------TATTCAGGTTCGAGTATATCGATTCGGGTCAGAAA-CAATTATTCGTAATATTTTTGTTACAATATATCAACAC----GCAGCTATGTATAG-------CTGGT-ATAGAC---T--------GTACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTTCATTTCATGCTTCC------AA
gi|13 : t-A---------CAT-------GAC-CCGAA-CAAAAT----AATTTGT---GGCGTTCAGTTTATTTGTGGTACCTGCTGCAt
gi|14 : atgccatgttctttagaaccagatccgaactgaaatctggaatggaaccgaAATA-CTC----GCAG--ACGT--GGACT----CTGGT-TTAGAC---TTGACCTCCGTACTAGAAACAG----CATTGTC----ACTT---CTCGTTTCCATTCCATG--TTT------AAAAT-gccctagg
gi|15 : atcatgtc---C---AGTTCTCGA-TTATTTTGGA-ACCCGTTGCA
gi|2 : caaaaagcagttttgaactgaaattttgaatgatgcgactctacaatatgacccgTCAAGTCAAGTTG-GTTCAGGATTTTTAA-TTC-------A-G-------GTT-----A---------AAATCAAAAA-CCGTTATTTGTA----TTTGGTT-CAATGTAATAACTC----ACAG--ATGT--GGGTT----CTGAT-TTA--C---TTGATGTCCATACTAGAAACAT----CATTTCC----ACTTCTACTCATTTCCATTCCATG-TTTC------AATGT-AAATGTCTCGTCATTGACGATAATGAATTTTCTGGC-----TATTTAAAATG-------GTC--------GTTTT-TCCAT--T--TAG-------CAATA-------AAT------T-AGC-AAATTTAGATTTTG-----ATGCCATGTT----GTTTAAACAGATTTCT--AATAATAA---------CAATCT----GAC-CCTAACCGAAATCTTGAA
gi|2 : ggttctaaaataaatctgaaaatttC-CTGAAC---AAT---GAAC---CCAAGATTTTCTG-TTATTTAGGGTACATGTCGCAaatagattcaaacatgccctgaacaatgaacccaagattttctgttatttagggtacatgtcgcagcccta
gi|3 : ggttctaaaataaatctgaaaattttcaagtcaagttggttcaggatttttaattcaggttaaaatcaaaaaccgttatttgtatttggttcaatgtaataactcacagatgtgggttctgatttacttgatgtccatactagaaacatcatttccacttctactcatttccattccatgtttcaatgtaaatgtctcgtcattgacgataatgaattttctggctatttaaaatggtcgtttttccatttagcaataaattagcaaatttagattttgatgccatgttgtttaaacagatttctaataataacaatctgaccctaaccgaaatcttgaaaatagattcaaacatgcGAATCAAAAAACTTTTCTTTATA----TTATGTTACATTATAAAAACTT----GCAG--GTGT--GGACT----CTGGT-TTA---------ATGTAAATATTAGAAACAT----CATTGCC----ACTTCCACTTGTTTC--TTCCATGCTTTC------GACAT-GAGTGTCTAGTCAT--A-AATATCA-ATGCCGTGGC----ACATTTTAAATGT------GTC------T-ATTTTGCCAACAATGACAT-------TAATTAACAACAAAT------CAAGTGAAATTTAAATTTTG-----ACGGCAAGTT----G----------TTTCT--CGTAAT-A---------CAAAAAAATGGAC-CCGAATCGAAACCCAGAAT---gcccta
gi|3 : ttctgttcaggtctattcagataaattaa---C---AGTTTTCGG-TTATTTCTGGTATCCATTGCAaatgaaatcaaacccacccaaaaaaacacgacccacagttttcggttatttctggtatccattgcagccct
gi|4 : ttctgttcaggtctattcagataaattaagaatcaaaaaacttttctttatattatgttacattataaaaacttgcaggtgtggactctggtttaatgtaaatattagaaacatcattgccacttccacttgtttcttccatgctttcgacatgagtgtctagtcataaatatcaatgccgtggcacattttaaatgtgtctattttgccaacaatgacattaattaacaacaaatcaagtgaaatttaaattttgacggcaagttgtttctcgtaatacaaaaaaatggacccgaatcgaaacccagaataatgaaatcaaacccacccaaaaaaacacgacccaTCGAGTCGGGCCA-TTTCAGGATTGAGAAATTCGCGTTTGA-GTATTTCGGTTCGCGTATTTCGTTTCGAGTTAAAAA-CCTTTATTTGTA----TTTTGTTACAATATAATAACTCACATGCAG--ATATATGGACT----CTGGT-TTAGAT---TTGACATCCATACTAGAAACATGCACCATTGCC----ACTTTTACTCGTTTCCATTCCATGGTTTC------AAGAT-AAGTGTCTAGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTATATAT------GTC------T-ATTTTGTCCGCAATGACAC-------AAATT---------T------TAAAT-AACTTGAGATTTTG-----ACGCCATCTT----G----------TTTCT--AAT------------------------GAC-CCGAACC-AAATCCGGAAT---C---GGTTTTCGA-TTATCTCGGGTACCCGTTGCAgccct
gi|5 : TACTTTGTTTGCAGTATAAAA-CCATGATTTGTA----TTTTGTTACAATACATTAACTC----GCAA--AT--ATGGACT----CCGAT-TTAGAC---TTGGCACCCATACTAGAAACAT----CATTACCACATACTTCTACTCGTTTCAATTCCATGCTTTC------AATAC-AAGAGTC----------------TG-ATGCTGTAGT----TTGTTCTAATTGT------GTC------T-ATTTTGTCAATAATAACAT-------CAA------------------TAAAC-AAATTTAGATTTTGATTTTACACCATCTT----G----------TTTCT--AATAAT-A---------CA--------AACACCGGATCGAAA-CCAAAAT---
gi|6 : atgattcctatataccccatTATGGACT----CTGGT-TTAGAC---TTGACATCCATATTAGAAACAA----CATTGCC----ACTCCTAATCGTTTCCA-TCCATGTTTTC------AATATCAAGTGTCGTGTCATT-------------------GT----CTATTT------T------GTC------C-AT---------AATGACAT-------G---T-------GA-------------AAATTTAGAATTCG-----ATGCCTTCTT----G----------GTTCT--AATAAT-A---------GA--------AACACTGAACCTGAATCCGGAAT---aatggaacccaacccgacccgaacaacacaactcgcg
gi|6 : taactaaaaaaTTGGATTGAGTTCAG-ATCCATTA-TTC-------C-GGATTCAGGTTCA-GTGTTTCaatggatctgaactcaatccaaacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|6 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataataTTTTGG-TTATTTCGGGTACACGTTGCAacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|7 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataatagaaacactgaacctgaatccggaataatggatctgaactcaatccaaacaacatgacccgcagATGCTTTC------AAAAT-AAGTGTCTGGTCACTGATGAATTTG-ACACTGTGGCTTAATTATTTTAGATGTGA----GTA------TGATTTTGTCCAAAATGACATCAATAAAAAATT-------AAC------TAAGCGAAATTTAGATTTTG-----ACGCCATGTT----C----------TTTCT--AATCAT-ACAAACAC--CA--------GAC-CTGGACCAAAATCCAGAAgcccta
gi|8 : ctaTCAGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------AAGTAC----G---G-GTATTTCGTTTCGAGTCAGAGG-CCATTATTTGTA----GTTTATTACAATATATTAACTC----AAAG--A--TATGGACT----CTGGT-TTTGAC---TTTACATTCATATTAGAATCAA----CATT--------------CTCGTTTCCATTCCATGTTTTC------AACAT----TGTCTCGTCATCGATGATATTG-GGACTGTaaattgcagtcctattgactatgatgcataaaacagataacccata
gi|9 : aatttT--AATAAT-G-------------------GAC-CTATACTGTGATCC---AT-------GGTTTTCTG-TTATTTCGGGTATCTGTTGCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTAAGATTTAGATGCCAAGTTATGTTTCTATTATAAAAATGTAGCCAAACAAAATCTGGGAAATGGGACGGAACTCGATTTGAACAACATGACCTGCGGCTTTCGGTTATTCTTG
Unaligned ( gi|16 ): GAACAACACAACTTGTGGACTTCTGTAATTCTGGGTACCCATTGTAGACCTA
Unaligned ( gi|17 ): CACAACTCATAGTACTTTATTAATTAAATTGTTATTTATGTGTCTTGACAAA
Alignments
lowQualScore : 4444444444444444444 111 1111 11111111 111111 111111 11111 2222222222 1111 5555555555555555555555555555555555 11111 444444444444444 5555555555555555555 1111111
lowQualScore : 8 1111111111111111111 777 555 0 3 1 5 1 1 2222 9999 77777777 8888 4 777 0 3 8888 0 8888 4 000000 2 44 77 888888 4 1 55555 0 11 8888888888 0000 0 0000000000000000000000000000000000 44444 0 000000000000000 66 0 4 9999999999999999999 8 3 7 6666666 1 5 0
lowQualScore : . ................... ... ... . . . . . . .... .... ........ .... . ... . . .... . .... . ...... . .. .. ...... . . ..... . .. .......... .... . .................................. ..... . ............... .. . . ................... . . . ....... . . .
lowQualScore : 0 7777777777777777777 222 333 1 3 0 7 0 4 1111 4444 88888888 5555 0 000 7 0 5555 7 5555 3 555555 4 88 44 000000 4 9 99999 4 55 8888888888 9999 2 2222222222222222222222222222222222 33333 7 777777777777777 99 1 4 7777777777777777777 0 2 3 4444444 4 0 2
consensus : TCGGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------A-GTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT----------GTC--T-ATTTTGTCCACAATGACATC-------AATT-------AAT------TAAGC-AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTCT--AATAAT-A---------CA--------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
Reference ( family-1819 ) : TCGGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------A-GTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT----------GTC--T-ATTTTGTCCACAATGACATC-------AATT-------AAT------TAAGC-AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTCT--AATAAT-A---------CA--------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
gi|1 : TTGGGTCGGATCA-GTGCAGGATTTTTTA---------------ATTCAGGTTTG-GTATTTCAGTTTGGGTCAAAAA-CCTTTATTCATA----TTTTGTAACAGTATAATAACTG----GCAG--A--TATGGACTTCCGTTAGTCTTAGACTTATTAACATGTATACCAGAAACAT----CTTTGCC----ACTTCTACATGATTCAATTCCTTGCTTTCAAATTGAATAT-AAGTGTATCGT---------TATTG-ATGCTGTGGC----TTACTCTAATTGT----------CT---T-ATTTTGTCCACGATGACATC-------AATT-------AATCATTGACAAGCAAAATTTAGATTTTG-----ACACCATCCTCTCAGACC-------TCTCTCAAATAAT-ACAAACACCGCA--------GAC-CTGAACTGAAATCCGGAAT---C---
gi|1 : aaaaaaaaaTTTTCTG-TTATTTTGGGTACCCGTTGCAccgactagattaatgcataatacgacccgtatttttctgttattttgggtacccgttgcagact
gi|10 : aaaaaaaaattgggtcggatcagtgcaggattttttaattcaggtttggtatttcagtttgggtcaaaaacctttattcatattttgtaacagtataataactggcagatatggacttccgttagtcttagacttattaacatgtataccagaaacatctttgccacttctacatgattcaattccttgctttcaaattgaatataagtgtatcgttattgatgctgtggcttactctaattgtcttattttgtccacgatgacatcaattaatcattgacaagcaaaatttagattttgacaccatcctctcagacctctctcaaataatacaaacaccgcagacctgaactgaaatccggaatcccgactagattaatgcataatacgacccgtatTTGGTTACATAATGATTATTC----GC----------GGAC--------GT-T--GAC-----GAAGTCTATAGGAGAACCAT----CACTACC----ACTTCTACTTATTTCCATTCCATGCTTTC------A--------------GTCCTTAATATTATTG-ATCTTGTGGT----GTATTTTAGATATTACATAGTCTGTCATT-GTTTTGTCCACAGTGACATC-------Agact
gi|11 : gttaAGGATTT---A-TT-----------TATTCAGGTTCGAGTATATCGATTCGGGTCAGAAA-CAATTATTCGTAATATTTTTGTTACAATATATCAACAC----GCAGCTATGTATAG-------CTGGT-ATAGAC---T--------GTACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTTCATTTCATGCTTCC------AA
gi|13 : t-A---------CAT-------GAC-CCGAA-CAAAAT----AATTTGT---GGCGTTCAGTTTATTTGTGGTACCTGCTGCAt
gi|14 : atgccatgttctttagaaccagatccgaactgaaatctggaatggaaccgaAATA-CTC----GCAG--ACGT--GGACT----CTGGT-TTAGAC---TTGACCTCCGTACTAGAAACAG----CATTGTC----ACTT---CTCGTTTCCATTCCATG--TTT------AAAAT-gccctagg
gi|15 : atcatgtc---C---AGTTCTCGA-TTATTTTGGA-ACCCGTTGCA
gi|2 : caaaaagcagttttgaactgaaattttgaatgatgcgactctacaatatgacccgTCAAGTCAAGTTG-GTTCAGGATTTTTAA-TTC-------A-G-------GTT-----A---------AAATCAAAAA-CCGTTATTTGTA----TTTGGTT-CAATGTAATAACTC----ACAG--ATGT--GGGTT----CTGAT-TTA--C---TTGATGTCCATACTAGAAACAT----CATTTCC----ACTTCTACTCATTTCCATTCCATG-TTTC------AATGT-AAATGTCTCGTCATTGACGATAATGAATTTTCTGGC-----TATTTAAAATG-----------GTC----GTTTT-TCCAT--T--TAGC-------AATA-------AAT------T-AGC-AAATTTAGATTTTG-----ATGCCATGTT----GTTTAAACAGATTTCT--AATAATAA---------CAATCT----GAC-CCTAACCGAAATCTTGAA
gi|2 : ggttctaaaataaatctgaaaatttC-CTGAAC---AAT---GAAC---CCAAGATTTTCTG-TTATTTAGGGTACATGTCGCAaatagattcaaacatgccctgaacaatgaacccaagattttctgttatttagggtacatgtcgcagcccta
gi|3 : ggttctaaaataaatctgaaaattttcaagtcaagttggttcaggatttttaattcaggttaaaatcaaaaaccgttatttgtatttggttcaatgtaataactcacagatgtgggttctgatttacttgatgtccatactagaaacatcatttccacttctactcatttccattccatgtttcaatgtaaatgtctcgtcattgacgataatgaattttctggctatttaaaatggtcgtttttccatttagcaataaattagcaaatttagattttgatgccatgttgtttaaacagatttctaataataacaatctgaccctaaccgaaatcttgaaaatagattcaaacatgcGAATCAAAAAACTTTTCTTTATA----TTATGTTACATTATAAAAACTT----GCAG--GTGT--GGACT----CTGGT-TTA---------ATGTAAATATTAGAAACAT----CATTGCC----ACTTCCACTTGTTTC--TTCCATGCTTTC------GACAT-GAGTGTCTAGTCAT--A-AATATCA-ATGCCGTGGC----ACATTTTAAATGT----------GTC--T-ATTTTGCCAACAATGACATT-------AATTAACAACAAAT------CAAGTGAAATTTAAATTTTG-----ACGGCAAGTT----G----------TTTCT--CGTAAT-A---------CAAAAAAATGGAC-CCGAATCGAAACCCAGAAT---gcccta
gi|3 : ttctgttcaggtctattcagataaattaa---C---AGTTTTCGG-TTATTTCTGGTATCCATTGCAaatgaaatcaaacccacccaaaaaaacacgacccacagttttcggttatttctggtatccattgcagccct
gi|4 : ttctgttcaggtctattcagataaattaagaatcaaaaaacttttctttatattatgttacattataaaaacttgcaggtgtggactctggtttaatgtaaatattagaaacatcattgccacttccacttgtttcttccatgctttcgacatgagtgtctagtcataaatatcaatgccgtggcacattttaaatgtgtctattttgccaacaatgacattaattaacaacaaatcaagtgaaatttaaattttgacggcaagttgtttctcgtaatacaaaaaaatggacccgaatcgaaacccagaataatgaaatcaaacccacccaaaaaaacacgacccaTCGAGTCGGGCCA-TTTCAGGATTGAGAAATTCGCGTTTGA-GTATTTCGGTTCGCGTATTTCGTTTCGAGTTAAAAA-CCTTTATTTGTA----TTTTGTTACAATATAATAACTCACATGCAG--ATATATGGACT----CTGGT-TTAGAT---TTGACATCCATACTAGAAACATGCACCATTGCC----ACTTTTACTCGTTTCCATTCCATGGTTTC------AAGAT-AAGTGTCTAGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTATATAT----------GTC--T-ATTTTGTCCGCAATGACACA-------AATT---------T------TAAAT-AACTTGAGATTTTG-----ACGCCATCTT----G----------TTTCT--AAT------------------------GAC-CCGAACC-AAATCCGGAAT---C---GGTTTTCGA-TTATCTCGGGTACCCGTTGCAgccct
gi|5 : TACTTTGTTTGCAGTATAAAA-CCATGATTTGTA----TTTTGTTACAATACATTAACTC----GCAA--AT--ATGGACT----CCGAT-TTAGAC---TTGGCACCCATACTAGAAACAT----CATTACCACATACTTCTACTCGTTTCAATTCCATGCTTTC------AATAC-AAGAGTC----------------TG-ATGCTGTAGT----TTGTTCTAATTGT----------GTC--T-ATTTTGTCAATAATAACATC-------AA------------------TAAAC-AAATTTAGATTTTGATTTTACACCATCTT----G----------TTTCT--AATAAT-A---------CA--------AACACCGGATCGAAA-CCAAAAT---
gi|6 : atgattcctatataccccatTATGGACT----CTGGT-TTAGAC---TTGACATCCATATTAGAAACAA----CATTGCC----ACTCCTAATCGTTTCCA-TCCATGTTTTC------AATATCAAGTGTCGTGTCATT-------------------GT----CTATTT------T----------GTC--C-AT---------AATGACAT---------GTG-------AA--------------AATTTAGAATTCG-----ATGCCTTCTT----G----------GTTCT--AATAAT-A---------GA--------AACACTGAACCTGAATCCGGAAT---aatggaacccaacccgacccgaacaacacaactcgcg
gi|6 : taactaaaaaaTTGGATTGAGTTCAG-ATCCATTA-TTC-------C-GGATTCAGGTTCA-GTGTTTCaatggatctgaactcaatccaaacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|6 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataataTTTTGG-TTATTTCGGGTACACGTTGCAacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|7 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataatagaaacactgaacctgaatccggaataatggatctgaactcaatccaaacaacatgacccgcagATGCTTTC------AAAAT-AAGTGTCTGGTCACTGATGAATTTG-ACACTGTGGCTTAATTATTTTAGATGTGA--------GTA--TGATTTTGTCCAAAATGACATCAATAAAAAATT-------AAC------TAAGCGAAATTTAGATTTTG-----ACGCCATGTT----C----------TTTCT--AATCAT-ACAAACAC--CA--------GAC-CTGGACCAAAATCCAGAAgcccta
gi|8 : ctaTCAGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------AAGTAC----G---G-GTATTTCGTTTCGAGTCAGAGG-CCATTATTTGTA----GTTTATTACAATATATTAACTC----AAAG--A--TATGGACT----CTGGT-TTTGAC---TTTACATTCATATTAGAATCAA----CATT--------------CTCGTTTCCATTCCATGTTTTC------AACAT----TGTCTCGTCATCGATGATATTG-GGACTGTaaattgcagtcctattgactatgatgcataaaacagataacccata
gi|9 : aatttT--AATAAT-G-------------------GAC-CTATACTGTGATCC---AT-------GGTTTTCTG-TTATTTCGGGTATCTGTTGCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTAAGATTTAGATGCCAAGTTATGTTTCTATTATAAAAATGTAGCCAAACAAAATCTGGGAAATGGGACGGAACTCGATTTGAACAACATGACCTGCGGCTTTCGGTTATTCTTG
Unaligned ( gi|16 ): GAACAACACAACTTGTGGACTTCTGTAATTCTGGGTACCCATTGTAGACCTA
Unaligned ( gi|17 ): CACAACTCATAGTACTTTATTAATTAAATTGTTATTTATGTGTCTTGACAAA
Alignments
lowQualScore : 4444444444444444444 111 1111 11111111 111111 111111 11111 2222222222 1111 5555555555555555555555555555555555 11111 444444444444444 5555555555555555555 1111111
lowQualScore : 8 1111111111111111111 777 555 0 3 1 5 1 1 2222 9999 77777777 8888 4 777 0 3 8888 0 8888 4 000000 2 44 77 888888 4 1 55555 0 11 8888888888 0000 0 0000000000000000000000000000000000 44444 0 000000000000000 66 0 4 9999999999999999999 8 3 7 6666666 1 5 0
lowQualScore : . ................... ... ... . . . . . . .... .... ........ .... . ... . . .... . .... . ...... . .. .. ...... . . ..... . .. .......... .... . .................................. ..... . ............... .. . . ................... . . . ....... . . .
lowQualScore : 0 7777777777777777777 222 333 1 3 0 7 0 4 1111 4444 88888888 5555 0 000 7 0 5555 7 5555 3 555555 4 88 44 000000 4 9 99999 4 55 8888888888 9999 2 2222222222222222222222222222222222 33333 7 777777777777777 99 1 4 7777777777777777777 0 2 3 4444444 4 0 2
consensus : TCGGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------A-GTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT----------GTC--T-ATTTTGTCCACAATGACATC-------AATT-------AAT------TAAGC-AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTCT--AATAAT-A---------CA--------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
Reference ( family-1819 ) : TCGGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------A-GTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT----------GTC--T-ATTTTGTCCACAATGACATC-------AATT-------AAT------TAAGC-AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTCT--AATAAT-A---------CA--------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
gi|1 : TTGGGTCGGATCA-GTGCAGGATTTTTTA---------------ATTCAGGTTTG-GTATTTCAGTTTGGGTCAAAAA-CCTTTATTCATA----TTTTGTAACAGTATAATAACTG----GCAG--A--TATGGACTTCCGTTAGTCTTAGACTTATTAACATGTATACCAGAAACAT----CTTTGCC----ACTTCTACATGATTCAATTCCTTGCTTTCAAATTGAATAT-AAGTGTATCGT---------TATTG-ATGCTGTGGC----TTACTCTAATTGT----------CT---T-ATTTTGTCCACGATGACATC-------AATT-------AATCATTGACAAGCAAAATTTAGATTTTG-----ACACCATCCTCTCAGACC-------TCTCTCAAATAAT-ACAAACACCGCA--------GAC-CTGAACTGAAATCCGGAAT---C---
gi|1 : aaaaaaaaaTTTTCTG-TTATTTTGGGTACCCGTTGCAccgactagattaatgcataatacgacccgtatttttctgttattttgggtacccgttgcagact
gi|10 : aaaaaaaaattgggtcggatcagtgcaggattttttaattcaggtttggtatttcagtttgggtcaaaaacctttattcatattttgtaacagtataataactggcagatatggacttccgttagtcttagacttattaacatgtataccagaaacatctttgccacttctacatgattcaattccttgctttcaaattgaatataagtgtatcgttattgatgctgtggcttactctaattgtcttattttgtccacgatgacatcaattaatcattgacaagcaaaatttagattttgacaccatcctctcagacctctctcaaataatacaaacaccgcagacctgaactgaaatccggaatcccgactagattaatgcataatacgacccgtatTTGGTTACATAATGATTATTC----GC----------GGAC--------GT-T--GAC-----GAAGTCTATAGGAGAACCAT----CACTACC----ACTTCTACTTATTTCCATTCCATGCTTTC------A--------------GTCCTTAATATTATTG-ATCTTGTGGT----GTATTTTAGATATTACATAGTCTGTCATT-GTTTTGTCCACAGTGACATC-------Agact
gi|11 : gttaAGGATTT---A-TT-----------TATTCAGGTTCGAGTATATCGATTCGGGTCAGAAA-CAATTATTCGTAATATTTTTGTTACAATATATCAACAC----GCAGCTATGTATAG-------CTGGT-ATAGAC---T--------GTACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTTCATTTCATGCTTCC------AA
gi|13 : t-A---------CAT-------GAC-CCGAA-CAAAAT----AATTTGT---GGCGTTCAGTTTATTTGTGGTACCTGCTGCAt
gi|14 : atgccatgttctttagaaccagatccgaactgaaatctggaatggaaccgaAATA-CTC----GCAG--ACGT--GGACT----CTGGT-TTAGAC---TTGACCTCCGTACTAGAAACAG----CATTGTC----ACTT---CTCGTTTCCATTCCATG--TTT------AAAAT-gccctagg
gi|15 : atcatgtc---C---AGTTCTCGA-TTATTTTGGA-ACCCGTTGCA
gi|2 : caaaaagcagttttgaactgaaattttgaatgatgcgactctacaatatgacccgTCAAGTCAAGTTG-GTTCAGGATTTTTAA-TTC-------A-G-------GTT-----A---------AAATCAAAAA-CCGTTATTTGTA----TTTGGTT-CAATGTAATAACTC----ACAG--ATGT--GGGTT----CTGAT-TTA--C---TTGATGTCCATACTAGAAACAT----CATTTCC----ACTTCTACTCATTTCCATTCCATG-TTTC------AATGT-AAATGTCTCGTCATTGACGATAATGAATTTTCTGGC-----TATTTAAAATG-----------GTC----GTTTT-TCCAT--T--TAGC-------AATA-------AAT------T-AGC-AAATTTAGATTTTG-----ATGCCATGTT----GTTTAAACAGATTTCT--AATAATAA---------CAATCT----GAC-CCTAACCGAAATCTTGAA
gi|2 : ggttctaaaataaatctgaaaatttC-CTGAAC---AAT---GAAC---CCAAGATTTTCTG-TTATTTAGGGTACATGTCGCAaatagattcaaacatgccctgaacaatgaacccaagattttctgttatttagggtacatgtcgcagcccta
gi|3 : ggttctaaaataaatctgaaaattttcaagtcaagttggttcaggatttttaattcaggttaaaatcaaaaaccgttatttgtatttggttcaatgtaataactcacagatgtgggttctgatttacttgatgtccatactagaaacatcatttccacttctactcatttccattccatgtttcaatgtaaatgtctcgtcattgacgataatgaattttctggctatttaaaatggtcgtttttccatttagcaataaattagcaaatttagattttgatgccatgttgtttaaacagatttctaataataacaatctgaccctaaccgaaatcttgaaaatagattcaaacatgcGAATCAAAAAACTTTTCTTTATA----TTATGTTACATTATAAAAACTT----GCAG--GTGT--GGACT----CTGGT-TTA---------ATGTAAATATTAGAAACAT----CATTGCC----ACTTCCACTTGTTTC--TTCCATGCTTTC------GACAT-GAGTGTCTAGTCAT--A-AATATCA-ATGCCGTGGC----ACATTTTAAATGT----------GTC--T-ATTTTGCCAACAATGACATT-------AATTAACAACAAAT------CAAGTGAAATTTAAATTTTG-----ACGGCAAGTT----G----------TTTCT--CGTAAT-A---------CAAAAAAATGGAC-CCGAATCGAAACCCAGAAT---gcccta
gi|3 : ttctgttcaggtctattcagataaattaa---C---AGTTTTCGG-TTATTTCTGGTATCCATTGCAaatgaaatcaaacccacccaaaaaaacacgacccacagttttcggttatttctggtatccattgcagccct
gi|4 : ttctgttcaggtctattcagataaattaagaatcaaaaaacttttctttatattatgttacattataaaaacttgcaggtgtggactctggtttaatgtaaatattagaaacatcattgccacttccacttgtttcttccatgctttcgacatgagtgtctagtcataaatatcaatgccgtggcacattttaaatgtgtctattttgccaacaatgacattaattaacaacaaatcaagtgaaatttaaattttgacggcaagttgtttctcgtaatacaaaaaaatggacccgaatcgaaacccagaataatgaaatcaaacccacccaaaaaaacacgacccaTCGAGTCGGGCCA-TTTCAGGATTGAGAAATTCGCGTTTGA-GTATTTCGGTTCGCGTATTTCGTTTCGAGTTAAAAA-CCTTTATTTGTA----TTTTGTTACAATATAATAACTCACATGCAG--ATATATGGACT----CTGGT-TTAGAT---TTGACATCCATACTAGAAACATGCACCATTGCC----ACTTTTACTCGTTTCCATTCCATGGTTTC------AAGAT-AAGTGTCTAGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTATATAT----------GTC--T-ATTTTGTCCGCAATGACACA-------AATT---------T------TAAAT-AACTTGAGATTTTG-----ACGCCATCTT----G----------TTTCT--AAT------------------------GAC-CCGAACC-AAATCCGGAAT---C---GGTTTTCGA-TTATCTCGGGTACCCGTTGCAgccct
gi|5 : TACTTTGTTTGCAGTATAAAA-CCATGATTTGTA----TTTTGTTACAATACATTAACTC----GCAA--AT--ATGGACT----CCGAT-TTAGAC---TTGGCACCCATACTAGAAACAT----CATTACCACATACTTCTACTCGTTTCAATTCCATGCTTTC------AATAC-AAGAGTC----------------TG-ATGCTGTAGT----TTGTTCTAATTGT----------GTC--T-ATTTTGTCAATAATAACATC-------AA------------------TAAAC-AAATTTAGATTTTGATTTTACACCATCTT----G----------TTTCT--AATAAT-A---------CA--------AACACCGGATCGAAA-CCAAAAT---
gi|6 : atgattcctatataccccatTATGGACT----CTGGT-TTAGAC---TTGACATCCATATTAGAAACAA----CATTGCC----ACTCCTAATCGTTTCCA-TCCATGTTTTC------AATATCAAGTGTCGTGTCATT-------------------GT----CTATTT------T----------GTC--C-AT---------AATGACAT---------GTG-------AA--------------AATTTAGAATTCG-----ATGCCTTCTT----G----------GTTCT--AATAAT-A---------GA--------AACACTGAACCTGAATCCGGAAT---aatggaacccaacccgacccgaacaacacaactcgcg
gi|6 : taactaaaaaaTTGGATTGAGTTCAG-ATCCATTA-TTC-------C-GGATTCAGGTTCA-GTGTTTCaatggatctgaactcaatccaaacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|6 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataataTTTTGG-TTATTTCGGGTACACGTTGCAacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|7 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataatagaaacactgaacctgaatccggaataatggatctgaactcaatccaaacaacatgacccgcagATGCTTTC------AAAAT-AAGTGTCTGGTCACTGATGAATTTG-ACACTGTGGCTTAATTATTTTAGATGTGA--------GTA--TGATTTTGTCCAAAATGACATCAATAAAAAATT-------AAC------TAAGCGAAATTTAGATTTTG-----ACGCCATGTT----C----------TTTCT--AATCAT-ACAAACAC--CA--------GAC-CTGGACCAAAATCCAGAAgcccta
gi|8 : ctaTCAGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------AAGTAC----G---G-GTATTTCGTTTCGAGTCAGAGG-CCATTATTTGTA----GTTTATTACAATATATTAACTC----AAAG--A--TATGGACT----CTGGT-TTTGAC---TTTACATTCATATTAGAATCAA----CATT--------------CTCGTTTCCATTCCATGTTTTC------AACAT----TGTCTCGTCATCGATGATATTG-GGACTGTaaattgcagtcctattgactatgatgcataaaacagataacccata
gi|9 : aatttT--AATAAT-G-------------------GAC-CTATACTGTGATCC---AT-------GGTTTTCTG-TTATTTCGGGTATCTGTTGCA
blockSeqs : A AGAAATTCGCGTTTGAGT TCA CGA A C A A C ATAT ACAT CTATGTAT . . . G GCAC ACAT C . A CA TC TAATAT A C TTAAT GA TACATAGTCT ATT TAATTAACAACAAATCAAGTG ATTTT GTTTAAACAGA . A CAAAAAAATG A A T TTGT A T
blockSeqs : . TTAATTCAAGT TTC CGC T C . G T . . ATATAT . . . C . . C . T A TA TGACGA . T G AA GA TG CAATAAAAAATTAACTAAGCG . G . . CAAACACCA A G A CCAA G .
blockSeqs : . ATTATTCCGG TCA CA T G . T T . . ACGT . . . G . . C . C G TA TGATGA . G A AA . T CAATAAATTAGC . G . . CAATCT . G G C T .
blockSeqs : . TTAATTCAG . G T C . T T . . ATGT . . . G . . G . G A GT TGATGA . G T TA . T AAATTTTAAAT . G . . CAT . G A C G .
blockSeqs : ATTT . . . . . A T . . GTGT . . . A . . C . T A TG CGATGA . G T AT . T CAATAAAC . G . . CA . T G C G .
blockSeqs : . A T . . ATAT . . . A . . T . T A TC AAA . A C GA . C GTGAA . C . . GA . A A . G .
blockSeqs : . ATAT . . . A . . C . A . . T . A . . . . . . . . G . T .
blockSeqs : . . . . . A . . T . C . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ATAATTCGGGT******** CG* **** *** ****** TGATGA CAATAAATAC************************ G************** ** CA*****************
originalCons : TCGGGTCGGGTCG-GTTCAGGATTTTTAA-TTC-------A-GTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT----------GTC--T-ATTTTGTCCACAATGACATC-------AATT-------AAT------TAAGC-AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTCT--AATAAT-A---------CA--------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
finalCons : TCGGGTCGGGTCG-GTTCAGGATTTATAATTCGGGT--------ATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT----------GTC--T-ATTTTGTCCACAATGACATCAATAAATAC------------------------AAATTTAGATTTTG-----ACGCCATCTTG--------------TTTCT--AATAAT-ACA-----------------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTAAGATTTAGATGCCAAGTTATGTTTCTATTATAAAAATGTAGCCAAACAAAATCTGGGAAATGGGACGGAACTCGATTTGAACAACATGACCTGCGGCTTTCGGTTATTCTTG
Unaligned ( gi|16 ): GAACAACACAACTTGTGGACTTCTGTAATTCTGGGTACCCATTGTAGACCTA
Unaligned ( gi|17 ): CACAACTCATAGTACTTTATTAATTAAATTGTTATTTATGTGTCTTGACAAA
Alignments
lowQualScore : 555555555555555555555555555555 1111 11111111 111111 111111 11111 2222222222 1111 11111111 8888888888888888888888888 11111 444444444444444 5555555555555555555 1111111
lowQualScore : 8 000000000000000000000000000000 0 3 1 5 1 1 2222 9999 77777777 8888 4 777 0 3 8888 0 8888 4 000000 2 44 77 888888 4 1 55555 0 11 8888888888 0000 0 66666666 8888888888888888888888888 44444 0 000000000000000 66 0 4 9999999999999999999 8 3 7 6666666 1 5 0
lowQualScore : . .............................. . . . . . . .... .... ........ .... . ... . . .... . .... . ...... . .. .. ...... . . ..... . .. .......... .... . ........ ......................... ..... . ............... .. . . ................... . . . ....... . . .
lowQualScore : 0 000000000000000000000000000000 1 3 0 7 0 4 1111 4444 88888888 5555 0 000 7 0 5555 7 5555 3 555555 4 88 44 000000 4 9 99999 4 55 8888888888 9999 2 44444444 7777777777777777777777777 33333 7 777777777777777 99 1 4 7777777777777777777 0 2 3 4444444 4 0 2
consensus : TCGGGTCGGGTCG-GTTCAGGATTTATAA-------TTCGGGTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT----------GTC--T-ATTTTGTCCACAATGACAT-------CAA----T---AAAT-A---AC-A----AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTCT--AATAAT-A---------CA--------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
Reference ( family-1819 ) : TCGGGTCGGGTCG-GTTCAGGATTTATAA-------TTCGGGTATTCAGGTTCG-GTATTTCGTTTCGAGTCAAAAA-CCNTTATTCGTA----TTTTGTTACAATATAATAACTC----GCAG--ATGTATGGACT----CTGGT-TTAGAC---TTGACGTCCATACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTCCATTCCATGCTTTC------AANAT-AAGTGTCTCGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTAAATGT----------GTC--T-ATTTTGTCCACAATGACAT-------CAA----T---AAAT-----AC------AAATTTAGATTTTG-----ACGCCATCTT----G----------TTTCT--AATAAT-A---------CA--------GAC-CCGAACCGAAATCCGGAAT---C---GGTTTTCGG-TTATTTCGGGTACCCGTTGCA
gi|1 : TTGGGTCGGATCA-GTGCAGGATTT-----------TTTA---ATTCAGGTTTG-GTATTTCAGTTTGGGTCAAAAA-CCTTTATTCATA----TTTTGTAACAGTATAATAACTG----GCAG--A--TATGGACTTCCGTTAGTCTTAGACTTATTAACATGTATACCAGAAACAT----CTTTGCC----ACTTCTACATGATTCAATTCCTTGCTTTCAAATTGAATAT-AAGTGTATCGT---------TATTG-ATGCTGTGGC----TTACTCTAATTGT----------CT---T-ATTTTGTCCACGATGACAT-------CAA----T---TAATCATTGACAAGCA-AAATTTAGATTTTG-----ACACCATCCTCTCAGACC-------TCTCTCAAATAAT-ACAAACACCGCA--------GAC-CTGAACTGAAATCCGGAAT---C---
gi|1 : aaaaaaaaaTTTTCTG-TTATTTTGGGTACCCGTTGCAccgactagattaatgcataatacgacccgtatttttctgttattttgggtacccgttgcagact
gi|10 : aaaaaaaaattgggtcggatcagtgcaggattttttaattcaggtttggtatttcagtttgggtcaaaaacctttattcatattttgtaacagtataataactggcagatatggacttccgttagtcttagacttattaacatgtataccagaaacatctttgccacttctacatgattcaattccttgctttcaaattgaatataagtgtatcgttattgatgctgtggcttactctaattgtcttattttgtccacgatgacatcaattaatcattgacaagcaaaatttagattttgacaccatcctctcagacctctctcaaataatacaaacaccgcagacctgaactgaaatccggaatcccgactagattaatgcataatacgacccgtatTTGGTTACATAATGATTATTC----GC----------GGAC--------GT-T--GAC-----GAAGTCTATAGGAGAACCAT----CACTACC----ACTTCTACTTATTTCCATTCCATGCTTTC------A--------------GTCCTTAATATTATTG-ATCTTGTGGT----GTATTTTAGATATTACATAGTCTGTCATT-GTTTTGTCCACAGTGACAT-------CAgact
gi|11 : gttaAGGATTTAT----------T----TATTCAGGTTCGAGTATATCGATTCGGGTCAGAAA-CAATTATTCGTAATATTTTTGTTACAATATATCAACAC----GCAGCTATGTATAG-------CTGGT-ATAGAC---T--------GTACTAGAAACAT----CATTGCC----ACTTCTACTCGTTTTCATTTCATGCTTCC------AA
gi|13 : t-A---------CAT-------GAC-CCGAA-CAAAAT----AATTTGT---GGCGTTCAGTTTATTTGTGGTACCTGCTGCAt
gi|14 : atgccatgttctttagaaccagatccgaactgaaatctggaatggaaccgaAATA-CTC----GCAG--ACGT--GGACT----CTGGT-TTAGAC---TTGACCTCCGTACTAGAAACAG----CATTGTC----ACTT---CTCGTTTCCATTCCATG--TTT------AAAAT-gccctagg
gi|15 : atcatgtc---C---AGTTCTCGA-TTATTTTGGA-ACCCGTTGCA
gi|2 : caaaaagcagttttgaactgaaattttgaatgatgcgactctacaatatgacccgTCAAGTCAAGTTG-GTTCAGGATTTTTAA-------TTCAGGT-------------TA---------AAATCAAAAA-CCGTTATTTGTA----TTTGGTT-CAATGTAATAACTC----ACAG--ATGT--GGGTT----CTGAT-TTA--C---TTGATGTCCATACTAGAAACAT----CATTTCC----ACTTCTACTCATTTCCATTCCATG-TTTC------AATGT-AAATGTCTCGTCATTGACGATAATGAATTTTCTGGC-----TATTTAAAATG-----------GTC----GTTTT-TCCAT--T--TAG-------CAA----T---AAATTA---GC------AAATTTAGATTTTG-----ATGCCATGTT----GTTTAAACAGATTTCT--AATAATAA---------CAATCT----GAC-CCTAACCGAAATCTTGAA
gi|2 : ggttctaaaataaatctgaaaatttC-CTGAAC---AAT---GAAC---CCAAGATTTTCTG-TTATTTAGGGTACATGTCGCAaatagattcaaacatgccctgaacaatgaacccaagattttctgttatttagggtacatgtcgcagcccta
gi|3 : ggttctaaaataaatctgaaaattttcaagtcaagttggttcaggatttttaattcaggttaaaatcaaaaaccgttatttgtatttggttcaatgtaataactcacagatgtgggttctgatttacttgatgtccatactagaaacatcatttccacttctactcatttccattccatgtttcaatgtaaatgtctcgtcattgacgataatgaattttctggctatttaaaatggtcgtttttccatttagcaataaattagcaaatttagattttgatgccatgttgtttaaacagatttctaataataacaatctgaccctaaccgaaatcttgaaaatagattcaaacatgcGAATCAAAAAACTTTTCTTTATA----TTATGTTACATTATAAAAACTT----GCAG--GTGT--GGACT----CTGGT-TTA---------ATGTAAATATTAGAAACAT----CATTGCC----ACTTCCACTTGTTTC--TTCCATGCTTTC------GACAT-GAGTGTCTAGTCAT--A-AATATCA-ATGCCGTGGC----ACATTTTAAATGT----------GTC--T-ATTTTGCCAACAATGACATTAATTAACAA----C---AAAT------CAAGTG-AAATTTAAATTTTG-----ACGGCAAGTT----G----------TTTCT--CGTAAT-A---------CAAAAAAATGGAC-CCGAATCGAAACCCAGAAT---gcccta
gi|3 : ttctgttcaggtctattcagataaattaa---C---AGTTTTCGG-TTATTTCTGGTATCCATTGCAaatgaaatcaaacccacccaaaaaaacacgacccacagttttcggttatttctggtatccattgcagccct
gi|4 : ttctgttcaggtctattcagataaattaagaatcaaaaaacttttctttatattatgttacattataaaaacttgcaggtgtggactctggtttaatgtaaatattagaaacatcattgccacttccacttgtttcttccatgctttcgacatgagtgtctagtcataaatatcaatgccgtggcacattttaaatgtgtctattttgccaacaatgacattaattaacaacaaatcaagtgaaatttaaattttgacggcaagttgtttctcgtaatacaaaaaaatggacccgaatcgaaacccagaataatgaaatcaaacccacccaaaaaaacacgacccaTCGAGTCGGGCCA-TTTCAGGATTGAGAAATTCGCGTTTGAGTATTTCGGTTCGCGTATTTCGTTTCGAGTTAAAAA-CCTTTATTTGTA----TTTTGTTACAATATAATAACTCACATGCAG--ATATATGGACT----CTGGT-TTAGAT---TTGACATCCATACTAGAAACATGCACCATTGCC----ACTTTTACTCGTTTCCATTCCATGGTTTC------AAGAT-AAGTGTCTAGTCATTGATGATATTG-ATGCTGTGGC----TTATTTTATATAT----------GTC--T-ATTTTGTCCGCAATGACA--------CAAATTTT---AAAT-------------AACTTGAGATTTTG-----ACGCCATCTT----G----------TTTCT--AAT------------------------GAC-CCGAACC-AAATCCGGAAT---C---GGTTTTCGA-TTATCTCGGGTACCCGTTGCAgccct
gi|5 : TACTTTGTTTGCAGTATAAAA-CCATGATTTGTA----TTTTGTTACAATACATTAACTC----GCAA--AT--ATGGACT----CCGAT-TTAGAC---TTGGCACCCATACTAGAAACAT----CATTACCACATACTTCTACTCGTTTCAATTCCATGCTTTC------AATAC-AAGAGTC----------------TG-ATGCTGTAGT----TTGTTCTAATTGT----------GTC--T-ATTTTGTCAATAATAACAT-------CAA----T---AA-------AC------AAATTTAGATTTTGATTTTACACCATCTT----G----------TTTCT--AATAAT-A---------CA--------AACACCGGATCGAAA-CCAAAAT---
gi|6 : atgattcctatataccccatTATGGACT----CTGGT-TTAGAC---TTGACATCCATATTAGAAACAA----CATTGCC----ACTCCTAATCGTTTCCA-TCCATGTTTTC------AATATCAAGTGTCGTGTCATT-------------------GT----CTATTT------T----------GTC--C-AT---------AATGACAT---------G----T---GA---------------AAATTTAGAATTCG-----ATGCCTTCTT----G----------GTTCT--AATAAT-A---------GA--------AACACTGAACCTGAATCCGGAAT---aatggaacccaacccgacccgaacaacacaactcgcg
gi|6 : taactaaaaaaTTGGATTGAGTTCAG-ATCCATTA-------TTCCGG-ATTCAGGTTCA-GTGTTTCaatggatctgaactcaatccaaacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|6 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataataTTTTGG-TTATTTCGGGTACACGTTGCAacaacatgacccgcagttttggttatttcgggtacacgttgcagcccta
gi|7 : taactaaaaaatatggactctggtttagacttgacatccatattagaaacaacattgccactcctaatcgtttccatccatgttttcaatatcaagtgtcgtgtcattgtctattttgtccataatgacatgtgaaaatttagaattcgatgccttcttggttctaataatagaaacactgaacctgaatccggaataatggatctgaactcaatccaaacaacatgacccgcagATGCTTTC------AAAAT-AAGTGTCTGGTCACTGATGAATTTG-ACACTGTGGCTTAATTATTTTAGATGTGA--------GTA--TGATTTTGTCCAAAATGACAT-------CAA----TAAAAAATTA---ACTAAGCGAAATTTAGATTTTG-----ACGCCATGTT----C----------TTTCT--AATCAT-ACAAACAC--CA--------GAC-CTGGACCAAAATCCAGAAgcccta
gi|8 : ctaTCAGGTCGGGTCG-GTTCAGGATTTTTAA-------TTCAAGTAC----G---G-GTATTTCGTTTCGAGTCAGAGG-CCATTATTTGTA----GTTTATTACAATATATTAACTC----AAAG--A--TATGGACT----CTGGT-TTTGAC---TTTACATTCATATTAGAATCAA----CATT--------------CTCGTTTCCATTCCATGTTTTC------AACAT----TGTCTCGTCATCGATGATATTG-GGACTGTaaattgcagtcctattgactatgatgcataaaacagataacccata
gi|9 : aatttT--AATAAT-G-------------------GAC-CTATACTGTGATCC---AT-------GGTTTTCTG-TTATTTCGGGTATCTGTTGCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): TTTAAGATTTAGATGCCAAGTTATGTTTCTATTATAAAAATGTAGCCAAACAAAATCTGGGAAATGGGACGGAACTCGATTTGAACAACATGACCTGCGGCTTTCGGTTATTCTTG
Unaligned ( gi|16 ): GAACAACACAACTTGTGGACTTCTGTAATTCTGGGTACCCATTGTAGACCTA
Unaligned ( gi|17 ): CACAACTCATAGTACTTTATTAATTAAATTGTTATTTATGTGTCTTGACAAA