lowQualScore : 111111111111111
lowQualScore : 44 444444 4 555555555555 1 222 1 22 2222 1 1 1111 11 1111111111 11 1 22 11111 11 1111 111 11 11 22 11 333333333333333 1 11 111111 1 11111111111 88888888888888888888888888888888888888 3333333333333333333333333 99999999 1 1 111111 11111111 111111111 111 11
lowQualScore : 66 999999 0 999999999999 5 7 3 111 3 00 7 7777 0 6 6 6 6 3 6 9999 4 4 4 99 4 4 4 4 777 4 55 4 4 4 2222 4 4 4 00 4 66 4 9999 9999999999 4 66 4 8 8 8 66 4 66 4 4 00 66 1 77 5 5 0 66 5 66 66 888 5 11 4 888 5 5 5 888 888 888 5 99999 4 66 4 8 4 777 66 55 4 1 3333 666 8 9999 4 8888 4 4 4 4 9999 4 4 00 00 4 11 55 6 4 9 66 66 0 000000000000000 3 5 77 0 00 0 6 444444 5 2 5 66 2 2 5 66 1 5 5 5 1 44444444444 4 666 3 3 11111111111111111111111111111111111111 33 99999999 4 2 5555 444 2 1111111111111111111111111 6 44 77777 3 00000000 2 2 3 77777 2 66 5 2 2 6666 33 2 2 3 111111 4 44444444 55 44 333333333 3 3 6666 3 3 3 3 3 44 3 3 44 222 555 6 3 3 3 00 3 6666 888 3
lowQualScore : .. ...... . ............ . . . ... . .. . .... . . . . . . . .... . . . .. . . . . ... . .. . . . .... . . . .. . .. . .... .......... . .. . . . . .. . .. . . .. .. . .. . . . .. . .. .. ... . .. . ... . . . ... ... ... . ..... . .. . . . ... .. .. . . .... ... . .... . .... . . . . .... . . .. .. . .. .. . . . .. .. . ............... . . .. . .. . . ...... . . . .. . . . .. . . . . . ........... . ... . . ...................................... .. ........ . . .... ... . ......................... . .. ..... . ........ . . . ..... . .. . . . .... .. . . . ...... . ........ .. .. ......... . . .... . . . . . .. . . .. ... ... . . . . .. . .... ... .
lowQualScore : 00 000000 0 000000000000 0 3 2 333 3 00 3 0000 0 7 7 7 7 3 7 4444 4 4 0 55 0 0 0 0 000 0 55 0 0 0 5555 4 4 4 66 4 11 4 4444 4444444444 4 11 4 9 9 9 11 4 11 4 4 66 11 4 55 7 0 0 99 0 99 99 888 0 66 1 888 0 0 0 888 888 888 0 44444 4 11 4 9 4 888 11 66 4 9 9999 777 9 4444 4 8888 4 4 4 4 4444 4 4 66 66 4 11 00 7 4 7 99 99 1 777777777777777 4 0 55 0 11 1 0 444444 0 8 0 99 5 5 0 44 7 7 7 7 4 11111111111 4 444 6 6 11111111111111111111111111111111111111 77 77777777 0 7 7777 444 5 8888888888888888888888888 0 22 77777 1 11111111 9 0 7 11111 9 88 7 9 9 1111 99 9 9 1 999999 0 55555555 00 66 333333333 3 1 5555 1 1 1 1 1 22 1 1 22 222 444 2 1 1 1 44 1 5555 555 1
consensus : NNACAGTTCTGGGCAA-TCTCCAACGTGTTTCAGA-ACTGCCGCACGTC--CGTA-TGCA-GACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATA-TT-ACG-TACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AA---ATCTTAGGT-C--G-AC-A-AAACAATCG----GTCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-A--A-CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTG-TGTGCT---TT-CA-AGA-A---AT---C---ACTG-AA-----AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-GT-TTT--AATATTTCT-ATTNCTA--ATGGTACA--ATTTTTT---------TTTT--ATTTTTA-TGTTTTATATG-TTT-AATGTATTATAATCGAGTA------CTGT-GTGTGCGT-GCG--TGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-T-GTT-T--A-T-C--TTATGTTTTAA-T---TT-AGC-GTATT---TATTGTATCTT-GTTTTTCAGGTTTTTC---A--AAAA--A--------AAAA-A----AA---A-AA---C-----C---------------CTTGTCATC--G-----A-TCTTAATAGTAA------TGTTTTAT-TTTGGTGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--ATT-ATCT-ATT-AT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T---ATT-ATTATTA
Reference ( gi|1 ) : AAACAGTTCTGGGCAAGCCTCCAACGTGTTCGAAACACTGCCG-ACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-ACC-TACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AA---ATCTTAGGT-C--G-AC-A-AAACAATCG----GTCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-A--A-CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTG-AGTGTT---TT-CA-AGA-A---AT---C---ACTG-AA-----AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G--TTT--AATCTTTCT-ATTACTA--ATGGTACA--ATTTTTTTTTTTTATATTTTC-ATTTTTA-TGTTTTACATG-TTT-AATGTATTATAATCAAGTA------CTGT-GTGTACGT-GCG--TGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-T-GTT-T--A-T-C--TTATGTTTTAA-T---TT-AGC-GTATTAATTATGGTA-CTT-CTTTTTCAGATTTTTC---ATTAAAA--A--------AAGA-A----AA---A-AA---C-----C---------------CTTATCATC--G-----A-TCTTAATAGTAA-GTACTTTTTTTAT-TTTGGTGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--ATT-ATCT-ATT-AT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-C-AT---ACAAAT-A-T-G-G--T-AT----T---ATT-ATTATTA
gi|2 : ACAGTTCTGGGCAA-TCTCCAACGTGTTTCAGA-ACTGCCGCACGTC--CGTA-TGCA-GACCCCTCGTTACGAC-ATATAACACCAAGACTAAGA
gi|19 : gGTTACGACCATATAACACCAAAACTAAG------AGA---TT-ACG-TACACTTAC-AAGCTTCT--AC-AT-GATGAGCTGT-CCA-GTTT-ATATCAAGGCGAC----TACTGAGACAGTATAT-CAG--CTC-TG-CCCGAAA---ATCTTAG---T--G-ACAA-AAACAATCG----gaactacattggttgcctgtgcagtataggacaaaatataagatactttacgtacacttacaaagcttacatgatgagtgccatttatatcaagcgattaatagaagtatataagcctgcccgaaatcttaggttcggacaaaacaatcggtcactctagttgttccaaaaagtcgaaccgttatatggggatcgatgttcaaatcaatagccccaaaactgtggaaggcccttccaaactgtaaggactgtagaacactgtgtgctttcaagagaatcactgaaaacacattttttccatcaagtttttcaggactaattttcagtttaacgacattattttgtctgtctgactgtgcgttttatatttctatttctaatgtacaatttttatgttttagatgttttaatgtattataatgagtactgtgtgtgcgtgcgtgtacccataccatttcaatatgcttaaaacctgatgttattcttatgatttatttagcgtatttactgtatcttgtttttcagaagaaaaaaaaaacaaaaaaaccttgtcatcgatcttaatagtaatgttttattttggtgattttatggtattattatatctattatcattattatatatgcattgtaagcacctttgagcgtacatgttgtatgaaaagggtgctaacaaatatggtattattattattatta
gi|2 : tAGGAC--AAAATATAAGATACTTTACG-TACACTTACAAAGCTT----AC-AT-GATGAG-TG--CCA--TTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AA---ATCTTAGGT-TCGG-AC-A-AAACAATCG----GTCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-A--A-CCGTT-A----T--ATGGGGA-T--CGA-TGT-T-C--A--AATCAATAGCCCC-AAAACTGTGGAAGGCCC-TTCCAAA-C--TG-TA--AGG--AC--TG--TA---GAAC-ACTG-TGTGCT---TT-CA-AGAGA---AT---C---ACTG-AA-----AAC-A--C-A-TT-TTTTCCAT---CAA--G-TT-TTTCA----GGACTAA---TTTTCA----G-TTTAAC---GA-CA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G--TTT--TATATTTCT-ATTTCTA--ATG-TACA--AT----------------------TTTTA-TGTTTTAGATG-TTTTAATGTATTATAAT-GAGTA------CTGT-GTGTGCGT-GCG--TGTACCC-AT-ACCATTTC-AATATG-CTTAAAA-CCTGA-T-GTT-A--T-T-C--TTATGATTTA--T---TT-AGC-GTATT---TACTGTATCTT-GTTTTTCAGA---------AGAAAAA--A--------AAAACA----AA---A-AA---A-----C---------------CTTGTCATC--G-----A-TCTTAATAGTAA------TGTTTTAT-TTTGGTGATTTT-AT-----G-GTA--TTATT-A-TA-T----CT--ATT-ATC--ATT-AT------TATA-TAT--------GC--ATTGTA--A-G---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-A----ACAAAT-A-T-G-G--T-AT----TATTATT-ATTATTA
gi|3 : gacagttctgggcaatctccaacgtgtttcagaactgccgcacgtccgtatgcagacccctcgttacgacatataacaccaagactaagagaactacattggttgcctgtgcagtatAATATAAGATA-TT-ACCGTACACTTACAAAGCCT-TTAACTATTGATGAG-TGTTCCA-GTTTTATATCAA-GCGAT----TACT-AGA-AGTATAT-AAGG-C-C-TG-CCCG-AA---ATCTTAGGT-C--G-AC-A-AAACAATCG----GTCA-AT-C-TAG--T-TGTT--CCAAA----AAAG----------TCG-A--A-CCGTTAA-CTCT--AT-GGGA-T--CGATTGT-TTC--A--GATCAATAGCCCCAAAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AAG-GAC--TGATTA---GAAC-AATG-TGTGCT---TC-AA-AAA-A---AT---C---ACTG-AA-----AAC-A--C-A--A-TTTTCCAT---CAA--GC-T-TTTCA----GGACTAAT--TTT-CA----GTTTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-GTTTTT--AATATTTCT-ATTGCTA--ATGGTACA--ATTTTTT---------------AATTTTA-TGTTTTATATGTTTT-AATGTATTAT-ATCGATTA------CTGT-GTGTGCGT-GCG--TGTACCCCATTACCATTTC-AATA---------------A-T-AGC-T--A-------TATGTTTTAA-T---TTAAGC-GTAT---TTATTGTA-TCG-TGTTTTCAGGTTTTT-----TCGAAA--A--------AAGG-A----AA---A-AA---
gi|16 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AA---ATCTTAGGT-C--G-AC-A-AAACAATCG----GTCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-A--A-CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AACTAATAGCCCC-AAAACTGTGGAAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaaaaacaaataaaaaaaaaaccttgtcatcgatcttaatagtaatgtttttggtgattttatggtattattatatatattatctattattatatatgctgtgtaaagcacctttgagcataatgttgtatgaaaagggtgctataaaaataggtattattattttatt
gi|4 : -GATGAG-TGT-CCA-GTTG-ATATCAA-GCGAT-----ACT-AGA-AGTA-AT-AAT--C-CGTGGCCCG-GA---TACTTAGGT-C--G-AC-A-AAACA-TCGC---GTCA-CT-C-TAGG-T-TGTT--CC-AA----AAAG----------TCG-A--AACCGTTCA-CT-T--ATGGGGAAT--CGA-TGT-TTCCAATTAATCAATAGCCCC-AAAACTGCGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--T---T----GAACTTCTT-TGTGCT---TT-C--AGA-A---AT---C---ACTG-AA-----AAC-ACCC-ATTT-TTTTTCAT---CAA--GC-T-TTTCA-----GACTGA---TTT-CA----G--TTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-GT-TTT--AATATTTCTAATT--TA--AT-GTACA--ATTTTTT-------TATTT---ATGTTTACTGTTTTAAATG-TTG-A----ATTAGAATCGAGTA------CTGT-TTG--CGT-GCG--GTTACCCCATTA-CATTTC--ATATGCCTTTAAA-ACTGA-T-G-T-T--A-T-C--TTATGTTTT-A-T---TT-AGC-GTAT---TTAT-GTATCTT-GTTTATCAG----------------A--A--------AAAA-A----AA---C-AA---C-----C---------------CTTGTCATCTTG-----A-TCTTAATAGTAA--TG--TTTTTCATGTTTGGTGA---TTAT-----G-GTT--TAATT-A-TATT----CT--ATT-ATCTCATT-AT------TATATTAT--------GC--A-TGTA--AAG---------CTACCTTTG-A----GCGT-A--ATG-TTGT-ATTG--AAA-A---G--TGC-T-AT---ACCAAT-A-T-G-GT-T-ATGTGAT---ATT--TTATTA
gi|6 : atg-GATGAG-TGT-CCATGTTTTATGTCAA-GCGATGTGGTAC--AGA-AGTATATTAAG--C----G-CCCG-AA---ATCTTAGGT-C--GGAC-A-AAACAATCG----GTCA-CT-C-T-G--TGTGTTTGCC-TAGAGGAAAG----------TCGGA--A-CCGTT-AGCTGT--ATGGGGA-TGCCGA-TGTGTTC--A--AA-CAATAGCCC--AAAACTGTGGAATGCCCGTTCCAAAACCATG-TATAAGG-GAT--TG--TA---GAAC-ACTG---TGTTCGTTT-CA-AAG-G---AT---CTCGACTG-GAGA---AACGA--C-A-TTCTTTTCCAT---CAA--GCCT-TT-CA----GGACTAA---TTTTCA----G-TTTAAC---AAAGA-TTAT-TTTTGT----CTG-T-CTG--ACTGTG--CCG--TTTT-AATATTT-T-ATTTCTA--ATGGTACA--ATTTTTTT--------------ATTTTTA-TGTTTTACATG-TTTTAATGTATTATAATCGAGTA------CTGTTGTGTGCGTTGCGGGTGTACCC-ATTACCAATTC-AATATG-CTTTCAA-ACTTA-TTGTT-TTTA-T-TCTTTATGTTTTAA-T---TT--GC-GTATT---TATTGTA---T-CTT------GTTTTTC---AAGAAGA--A--------AAGA-A----AACAAA-AA---CAAAAAC---------------CTTGTCATC--G-----A-TCTTAATAGTAA-------TGTTTAT-TTCGGTGA-TTTTAT-----G-GTAT-TTATTAA-TA-T----CTTAATT-A--T-ATT-AT------Ttt
gi|8 : CGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AA---ATCTTAGGT-C--G-AC-A-AAACAATCG----GTCAACT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-A--A-CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--TG--TA---GAAC-ACTG-TGTGCA---TT-CA-AGA-A---AT---C---ACTGAAA-----AAC-A--C-A-TT-TTTTCCAT---CGA--GC-T-TTTCG----GGACTAAT--TTT-CA----G-TTT-AC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G--TTTAAAATATTTCT-ATTTCTA--ATGGTACA--ATTTTTTATTTTTATGTTTT--A---TAA-TGT---------TTT-AATGTATTATAATCGAGTA------CTGT-GTGTGCGT-GCG--TGTACCCCATTACCATTTC-AATta
gi|7 : T----TACT-AGA-AGTATA---AG--C-C-TG-CCCG-AA---ATCTTGGGT-C--G-AC-A-AAACAATCG----GTCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-A--A-CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GACCAATAGCCC---AAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTG-TGTGCT---TT-CA-AGA-A---AT---C---ACTG-AA-----AAC-A--C-A-TT-TTT-CCAT---CAA--GCTT-TT-CA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G--TTTT-AATCTTTCT-ATTACTA--ATGGTACA--GTTTTTTT--------------ATTT--A-TGTTTTATATG-TTT-AATGTATTATAATCGAGTATATGTACTGT-GTGTTCGT-GCG--TGTACCCCATTACCATTTC-AATATG-CTTTGAA-ATTGA-T-GTT-T--A-TTC--TTATGTTTTAA-T---TT-AGC-GTATT---TATTGTATCTT-GTTTTTCAGGTTT------------------------AAAA-A----AA---A-AA---C-----C---------------
gi|5 : at----TACT-AGA-CGTATAT-AAG--C-C-TG-CCCG-AA---ATCGTAGGT-C--G-AC-A-AAACAATCG----GTCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-A--A-CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTG-TGTGCT---TT-CA-AGA-A---AT---C---ACTG-AA-----AAC-A--C-ATTT-TTTTCCAT---CAA--A-TT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTA--C-GTTTTT--AATCTTTCT-ATTACTA--ATGGTACA--A-------TTTTTA-ATTTTCAATTTTTA-TGTTTTATATGTTTT-AATGTATTAAAATCGAGTA------CTGT-GTGTGCGT-GCG--TGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-T-GTT-T--ATT-C--TTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTA-TCT-GTTTTTCAGGGTTTTC--------AG--G--------AAGA-A----AA---ACAA---A-----C---------------CTTGTCATC--G-----A-TCTTAATAGTAA------TGTTTTAT-TTTGGTGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--ATT-ATCT-ATT-ATAATACATGTA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T---ATT-ATTATTAaaacaaacaaaaaaaaaccaaacaaacaaaaaaaaacctttgtcatcgatcttaatagtaatgttttatttggtgattttatggtattattatatctattatctattat
gi|21 : TATAT-AAGAGC-C-TG-CCCG-AAAACATCTTAGGTAC--T-GC-ACAAACAACTGAGATACCA-CTGCGTAGATC-TATT--CC-AA----AAAAGGTATTCGTTTCA-AATA-CCGTT-AGCT-TCCATCGA------CGA-TGT-TTCA-A--GACTAATAGGCCt
gi|9 : caAC-ATG-TA--TGGAGATCATG--TATGGAAAC-ACTGTAGTGCT---TTACACAGC-ACACATACAC---ATTG-AAGTAAAAAC-A--CAA-TT-TTTACCATAGGCAAAGACTTAGTTCGAATTAGACTAATCTTTT-CAGTCTG-TTTAACATAAA-GATTTATATTT-ATAGTACTGATACTGC-ACTGTGT-C-GT-TTT--AATATTTCT-ATTTCTATGGTGATACATTATTTT
gi|22 : AC-A--C-A-TT-TTTTCCAT---CAA--GC---TTTCAT---GGACT-A---TT--------A-TTTAAT---AA-GA--TAT-TTT-GT-----TG-T-CGGGAGCTGTGTCC-G--TTT--AATCTTTCT-ATTAccatgcttggagtgtataattagatgttctaccagtagtcgtgtat
gi|13 : TCTT-ATTTTTA-TGTTTT-TATG-TT-------ATTATAATCGAGTA------CTGT-GT-T-CGT-GCG--TA---CCCATTA-CATTTCAAATATG--TTTGAATACTGAGT-GTTGT--A-T-T--TTATGTTTTAATT---TT-AGC-GT-T---TTATTGTA-TTT-GTTTTTCAGGTTTTTCTGAAACAAAA--A--------AACA-AATATAA---A-AA---C-----C---------------atcccatgg
gi|11 : -T-C--TTATGTTTTAA-T---TT-AGCAGTATT---TATTGTATCTTGTTTTTTCAGGTTTTTC---A---AAA--A--------AAAA-A----AA---A-AA---C-----C----------------TTGTCATC--G-----A-TCTTAATAGTAA------TGTTTTAT-TTTGGTGATTCT-AT-----G-GTT--TTATT-A-TA-T----CT--ATT-ATCT-ATT-AT------TATA-TAT--------GC--ATTGTA--AAA---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-------ATTATTAaaactacaaaaacaaaaaaaaatctaa
gi|10 : atTTAA-TATATT-AGT-ATATT---TATTGTA---T-CTGTTT-----TTTTC---AG-AAGA--A--------AAAA-A----AA---A-AA---C-----CAAAAAAAAAAAAA--CTTGTCATC--G-----G-TCTTAATAGTAA-----TGTTTTTAT-TTTGGTGATTTT-AT-----G-GTA--TTATT-A-TA-T----CT--ATTTATCT-ATTTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGTAA-TG--AAA-GG-GT--TGC-TAAT---A-AAAT-A-TGG-G--T-AT----T---ATTAATTATTAt
gi|18 : ac---TT-AGT-ATATT---TATTGTATCTT-GTTTTTCAGA---------AGAAAAA--AAAAAACCAAAAA-A----AA---A-AA---A-----C---------------CTTGTCATC--G-----G-TCTTAATAGTAA------TGTTTTAT-TTTGGTGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--ATT-ATCT-ATT-AT------
gi|20 : tatacttatata---TT-AGT-ATATT---TATTGTATCTT-GTTTTTCAGA------------AGAA--A--------AAAA-A----AA---A-AA---C-----CAAAAAAAAAAAAAACCTTGTCATC--G-----G-TCTTAATAGTAA------TGTTTTAT-TTTGGTGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--ATT-ATCT-
gi|15 : atattatataAAAACCA--------AAAA-A----AA---A-AA---C-----C---------------CTTGTCATC--G-----A-TCTTAATAGTAA------TGTTTTAT-TTTGGTGATTTT-AT-----G-GTA--TTATT-A-TA-T----CT--ATT-ATCT-ATT-AT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACTTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T---ATT-ATT
gi|14 : ataaaaaaaaaAAAA--A--------AACA-A----AA---A-AAAACC-----C---------------CTTGTCATC--G-----A-TCTCA-TAGTAA-------TGTTTAT-TTTGGTGGTT---AT-----G-GTA--TTATTTA-TA-T----CT--AT--ATCT-AT--AT------T-TA-TAT--------GC--ATTGTA--AA----------C-AGCTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T---ATT-ATTt
gi|3 : aaaaaaaaaaaaacaaaaaacaacaacAAA--T--------AAAA-A----AA---A-AA---------C---------------CTTGTCATC--G-----A-TCTTAATAGTAATGT----------T-TTTGGTGA-TTTTAT-----G-GTA--TTATT-A-TA-T----AT--ATT-ATCT-ATT-AT------TATA-TAT--------GC--TGTGTA--AAG---------C-ACCTTTG-A----GCAT-A--ATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---AAAAAT-A---G-G--T-AT----T---ATT-ATT-TTAc
gi|7 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaaatataagatattaccgtacacttacaaagcctttaactattgatgagtgttccagttttatatcaagcgattactagaagtatataaggcctgcccgaaatcttaggtcgacaaaacaatcggtcaatctagttgttccaaaaaagtcgaaccgttaactctatgggatcgattgtttcagatcaatagccccaaaaactgtggaatgcccttccaaaacatgtaaaggactgattagaacaatgtgtgcttcaaaaaaatcactgaaaacacaattttccatcaagcttttcaggactaattttcagttttaacaagattattttgtctgtctgactgtgcgtttttaatatttctattgctaatggtacaattttttaattttatgttttatatgttttaatgtattatatcgattactgtgtgtgcgtgcgtgtaccccattaccatttcaataatagctatatgttttaatttaagcgtatttattgtatcgtgttttcaggttttttcgaaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaaaaacAA--A--------CAAA-A----AA---A-AA---C-----C---------------TTTGTCATC--G-----A-TCTTAATAGTAA------TGTTTTAT-TT-GGTGATTTT-AT-----G-GTA--TTATT-A-TA-T----CT--ATT-ATCT-ATT-AT------tt
gi|12 : atttactagaagtataagcctgcccgaaatcttgggtcgacaaaacaatcggtcactctagttgttccaaaaagtcgaaccgttacttatggggatcgatgtttcagaccaatagcccaaactgtggaatgcccttccaaaacatgtaagggactgtagaacactgtgtgctttcaagaaatcactgaaaacacatttttccatcaagcttttcaggactaatttcagtttaataagattattttgtctgtctgactgtgcgttttaatctttctattactaatggtacagtttttttatttatgttttatatgtttaatgtattataatcgagtatatgtactgtgtgttcgtgcgtgtaccccattaccatttcaatatgctttgaaattgatgtttattcttatgttttaatttagcgtatttattgtatcttgtttttcaggtttaaaaaaaaaaccaaacaaacaaaaaaaaaccaaac---A-AA---T-----C---------------CT-GTCATC--GTGATAACTCTGACTA-CGA-GCATCTTTGTAAT-TTTGGTGATTTTTATCATGTGTGTGACTTATT-AATA-TGTGACT--ATT-ATCT-AAA-ATA-----TAAA-TATTCCATTCTGCTTCTTGTATCAAGACACACATGC-ACACGTG-ATGACGCGT-AACATGATTGT-A-TG--AAA-AGTGG--TGC-T-AG---ACAAAT-A-T-G-T--T-AT----T---ATT-ATCATTA
gi|17 : TAATAATAA--TG-TTTTATTGT-TTGGATGATTTT-AT-----G-GTA--T-ATT-A-TA-T----CT--ATT-ATCT-ATT-AT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGTAA-CATA-TTGT-A-TG--AAA-AG-GGTTTGCTT-AT---ACAATT-ATT-G-G--TAAT----TA--ATT-ATTATTt
gi|23 : --ATTGTA--AAG---------C-ACCTTTGAA----GCGT-A-CATG--TGT-A-TG--AAAGAG-GA--T-C-T-GTATAACAAATAA-T-GTGTTT-AT----T---ATT-ATTATTAtttatt
gi|25 : TGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG--TGT-A-TG--AAA-GG-GT--CGC-T-AT---A-AAATAA-T-G-GT-T-AT----T---ATT-ATTATTttat
gi|26 : TTTG-A----GCAT-A-CATG-TTGT-A-TGGAAAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T---ATT-ATTA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|24 ): TTGTTGTTGTTTTTAAAAAAAAACCAAACAAACAAACAACCAAAACGCAAACAAAAACACATTTTTGTCAT
Alignments
lowQualScore : 2 2 1 22 2 2 22 1 1111 1 1111111111 1111111 1 1111 111 11 22222222222222222222222 1 111111 1 1111 333333333333 11111111111111111 555555555555555555555555555555555 2 111111 11111111 111111111
lowQualScore : 0 2 0 5 77 0 0 6 3 3 33 0 3 9999 8 5 5 5 5 1 5 8888 4 4 3 88 3 3 3 3 666 3 55 3 3 3 3 8888 4 4 4 99 4 55 4 8888 7777777777 4 99 8 8 8 55 4 55 4 4 99 55 0 55 5 4 8 66 4 66 66 777 4 4 4 4 4 777 4 4 777 4444444 4 66 4 55 4 88 4 777 55 7 4 2222 555 8 8888 4 777 4 4 4 4 8888 4 4 99 33 88 4 0 1 66 88888888888888888888888 0 4 4 8888 4 6 4 4 8888 111111 4 1 0 4 66 4 5 0 5 0 777 5 1111 4 555 3 3 555 1 3 666666666666 55 77777777777777777 99999999 2 33 444444444444444444444444444444444 3 44 77777 2 33 2 33 2 0 2 66666 2 66 5 2 2 5555 33 2 2 2 111111 3 33333333 44 44 222222222 3 2 6666 2 2 2 2 2 33 2 2 33 2 2 555 5 2 2 2 99 2 6666 2 2
lowQualScore : . . . . .. . . . . . .. . . .... . . . . . . . .... . . . .. . . . . ... . .. . . . . .... . . . .. . .. . .... .......... . .. . . . .. . .. . . .. .. . .. . . . .. . .. .. ... . . . . . ... . . ... ....... . .. . .. . .. . ... .. . . .... ... . .... . ... . . . . .... . . .. .. .. . . . .. ....................... . . . .... . . . . .... ...... . . . . .. . . . . . ... . .... . ... . . ... . . ............ .. ................. ........ . .. ................................. . .. ..... . .. . .. . . . ..... . .. . . . .... .. . . . ...... . ........ .. .. ......... . . .... . . . . . .. . . .. . . ... . . . . .. . .... . .
lowQualScore : 0 5 0 0 55 0 0 7 2 2 88 0 2 8888 0 7 7 7 7 4 7 5555 0 0 6 66 6 6 6 6 444 6 00 6 6 6 6 5555 0 0 0 55 0 55 0 5555 5555555555 0 55 0 0 0 55 0 55 0 0 55 55 4 66 0 4 9 11 4 11 11 888 4 4 4 4 4 888 4 4 888 4444444 4 11 0 55 0 88 0 000 55 0 0 5555 000 0 5555 0 000 0 0 0 0 5555 0 0 55 55 88 0 6 0 11 99999999999999999999999 9 0 0 5555 0 0 0 0 5555 555555 4 1 1 4 11 4 0 2 0 0 000 0 4444 0 888 3 3 888 2 3 000000000000 99 99999999999999999 11111111 5 44 111111111111111111111111111111111 1 22 11111 9 77 7 77 7 4 4 77777 7 33 3 7 7 7777 77 7 7 9 111111 6 22222222 66 22 333333333 1 9 1111 9 9 9 9 9 99 9 9 99 9 9 000 7 9 9 9 66 9 1111 9 9
consensus : NNACAGTTCTGGGCAAGCCTCCAACGTGTTCGAGACACTGCCGCACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATAC-TTAC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--CG-TTT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTT-TA-TGTTT----TAT-ATGTTTT-A-ATGTATTA----TAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTCAA-TATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
Reference ( family-1787 ) : NNACAGTTCTGGGCAA-TCTCCAACGTGTTTCAGA-ACTGCCGCACGTC--CGTA-TGCA-GACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATA--TTAC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--CG-TTT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTT-TA-TGTTT----TAT-ATG-TTT-A-ATGTATTA----TAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTCAA-TATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
gi|1 : ACAGTTCTGGGCAAGCCTCCAACGTGTTCGAAACACTGCCG-ACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATAC-TTAC-CTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGA-GTGT-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--CG--TT-TAATCTTTCTATTACTA--ATGGTACAATTTTT--TT-TTTTTATATTTTCATTTT-TA-TGTTT----TAC-ATG-TTT-A-ATGTATTA----TAATCAA------GTACTG-TGTGTACG-TGC--GTGTACCCCATTACCATTTCAA-TATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTATTAATTATGGTA-CTTCTTTTT-CAG--A-TTTTTC--ATTAAAAA------A----------AG--------A-A--AAAAAC-------------------C-------------C-TTATCATC--GATCTTAATAGTAAGTACTTT-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-C-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
gi|10 : aaTTAA-TATATT-AGT-ATAT---TTATTGTATC-TGTT-----------TTTTTC--AG-AAGAA------A----------AA--------A-A--AAAAAC-------------------CAAAAAAAAAAAAAC-TTGTCATC--GGTCTTAATAGTAA-----TGTTTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--ATTTATCT-ATTTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGTAA-TG--AAA-GG-GT--TGC-TAAT---A-AAAT-A-TGG-G--T-AT----T-ATTAATTATTA
gi|11 : ac-T--CTTATGTTTTAA-T---TT-AGCAGTAT---TTATTGTATCTTGTTTTTTCAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAA---------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTCT-AT-----G-GTT--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAA---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-----ATTATTA
gi|12 : at--AT-T--TTGG-TGATTTTTATCATGTGTGTGACTTATT-AATA-TGTGACT--A-TTATCT-A-AAATA-----TAAA-TATTCCATTCTGCTTCTTGTATCAAGACACACATGC-ACACGTG-ATGACGCGT-AACATGATTGT-A-TG--AAA-AGTGG--TGC-T-AG---ACAAAT-A-T-G-T--T-AT----T-ATT-ATCATTAt
gi|13 : aaatcctgtcatcgtgataactctgactacgagcatctttgtaT-CTT----------ATTTT-TA-TGTTT----T-T-ATG-TT--------ATTA----TAATCGA------GTACTG-TGT-T-CG-TGC--GTA---CCCATTAC-ATTTCAAATATG--TTTGAATACTGAGTG--TTGTA-T--TTTATGTTTTAATT---TT-AGC-GT-T---TTATTGTAT-TTGTTTTT-CAG--G-TTTTTCTGA--AACAA------A----------AA--------A-A--CAAAt
gi|14 : C--A--AAAAA------AC---------AA--------A-A--AAAAAC-------------------C-------------CCTTGTCATC--GATCTCA-TAGTAA-----TG-TTT---AT-T--TTGG-TGGTT---AT-----G-GTA--TTATTTA-TA-T----CT--A-T-ATCT-A-T-AT------T-TA-TAT--------GC--ATTGTA--AA----------C-AGCTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTtataaaaaccaaactacaaaaacaaaaaaaaatctaa
gi|15 : aaaaaaaaaaaaacaaaaaacaacaa--A--AAAAAAAACCAA----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACTTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTc
gi|16 : ataaaaGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AACTAATAGCCCC-AAAACTGTGGAAt
gi|17 : TAATAATAA-----TG-TTTT--AT-TGTTTGGATGATTTT-AT-----G-GTA--T-ATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGTAA-CATA-TTGT-A-TG--AAA-AG-GGTTTGCTT-AT---ACAATT-ATT-G-G--TAAT----TAATT-ATTATT
gi|18 : ---TT-AGT-ATAT---TTATTGTATCTTGTTTTT-CAGAAG---------A--AAAAA------A----------AAAACCAAAAA-A--AAAAAA-------------------C-------------C-TTGTCATC--GGTCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------tttatt
gi|19 : tatacttatataGTTACGACCATATAACACCAAAACTAAGAG--------A--TTAC-GTACACTTAC-AAGCTTCT--AC-AT-GATGAGCTGT-CCA-GTTT-ATATCAAGGCGAC----TACTGAGACAGTATAT-CAG--CTC-TG-CCCGAAAA---TCTTAG---T--G-ACAA-AAACAATCG-
gi|2 : tACAGTTCTGGGCAA-TCTCCAACGTGTTTCAGA-ACTGCCGCACGTC--CGTA-TGCA-GACCCCTCGTTACGA-CATATAACACCAAGACTAAGA
gi|2 : gAGGAC--AAAATATAAGATACTTTAC-GTACACTTACAAAGCTT----AC-AT-GATGAG-TG--CCA--TTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-TCGG-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A----T--ATGGGGA-T--CGA-TGT-T-C--A--AATCAATAGCCCC-AAAACTGTGGAAGGCCC-TTCCAAA-C--TG-TA--AGG--AC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---AGAAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--G-TT-TTTCA----GGACTAA---TTTTCA----G-TTTAAC---GA-CA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--CG-TTT-TA-TATTTCTATTTCTA--ATG-TACAATTTTT-------------------------A-TGTTT----TAG-ATG-TTTTA-ATGTATTA----TAAT-GA------GTACTG-TGTGTGCG-TGC--GTGTACCC-AT-ACCATTTCAA-TATG-CTTAAAA-CCTGA-TG--TT-AT-T--CTTATGATTTA--T---TT-AGC-GTAT---TTACTGTATCTTGTTTTT-CAGAAG---------A--AAAAA------A----------AA--------ACA--AAAAAA-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATC--A-TTAT------TATA-TAT--------GC--ATTGT---AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-A----ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTAgaactacattggttgcctgtgcagtataggacaaaatataagatactttacgtacacttacaaagcttacatgatgagtgccatttatatcaagcgattaatagaagtatataagcctgcccgaaatcttaggttcggacaaaacaatcggtcactctagttgttccaaaaagtcgaaccgttatatggggatcgatgttcaaatcaatagccccaaaactgtggaaggcccttccaaactgtaaggactgtagaacactgtgtgctttcaagagaatcactgaaaacacattttttccatcaagtttttcaggactaattttcagtttaacgacattattttgtctgtctgactgtgcgttttatatttctatttctaatgtacaatttttatgttttagatgttttaatgtattataatgagtactgtgtgtgcgtgcgtgtacccataccatttcaatatgcttaaaacctgatgttattcttatgatttatttagcgtatttactgtatcttgtttttcagaagaaaaaaaaaacaaaaaaaccttgtcatcgatcttaatagtaatgttttattttggtgattttatggtattattatatctattatcattattatatatgcattgtaagcacctttgagcgtacatgttgtatgaaaagggtgctaacaaatatggtattattattattatta
gi|20 : gacagttctgggcaatctccaacgtgtttcagaactgccgcacgtccgtatgcagacccctcgttacgacatataacaccaagactaagagaactacattggttgcctgtgcagtat---TT-AGT-ATAT---TTATTGTATCTTGTTTTT-CAG------------A--AGAAA------A----------AA--------A-A--AAAAACCAAAAAAAAAAAAAA----C-------------C-TTGTCATC--GGTCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-tta
gi|21 : atattatataTATAT-AAGAGC-C-TG-CCCG-AAAACATCTTAGGTAC--T-GC-ACAAACAACTG-AGATACCA-CTGCGTAGATC-TATT--CC-AA----AAAAGGTATTCGTTTCA-AATACCGTT-AGCT-TCCATCGA------CGA-TGT-TTCA-A--GACTAATAGGCC
gi|22 : caAC-A--C-A-TT-TTTTCCAT---CAA--GC---TTTCAT---GGACT-A---TT--------A-TTTAAT---AA-GA--TAT-TTT-GT-----TG-T-CGGGAGCTGTGTCCG--TT-TAATCTTTCTATT
gi|23 : --ATTGTA--AAG---------C-ACCTTTGAA----GCGT-A-CATG--TGT-A-TG--AAAGAG-GA--T-C-T-GTATAACAAATAA-T-GTGTTT-AT----T-ATT-ATTATTAaatcccatgg
gi|25 : TGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG--TGT-A-TG--AAA-GG-GT--CGC-T-AT---A-AAATAA-T-G-GT-T-AT----T-ATT-ATTATTttat
gi|26 : TTTG-A----GCAT-A-CATG-TTGT-A-TGGAAAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTA
gi|3 : AATATAAGATA--TTACCGTACACTTACAAAGCCT-TTAACTATTGATGAG-TGTTCCA-GTTTTATATCAA-GCGAT----TACT-AGA-AGTATAT-AAGG-C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-AT-C-TAG--T-TGTT--CCAAA----AAAG----------TCG-AA--CCGTTAA-CTCT--AT-GGGA-T--CGATTGT-TTC--A--GATCAATAGCCCCAAAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AAG-GAC--TGATTA---GAAC-AATGT-GTGC-TTC-AA-AA---A-AAT-C---AC-------TG-AA--AAC-A--C-A--A-TTTTCCAT---CAA--GC-T-TTTCA----GGACTAAT--TTT-CA----GTTTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--CGTTTT-TAATATTTCTATTGCTA--ATGGTACAA----T--TT-TTT----------AATTT-TA-TGTTT----TAT-ATGTTTT-A-ATGTATTA----T-ATCGA------TTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTCAA-TA---------------A-TA--GC-TA------TATGTTTTAA-T---TTAAGC-GTAT---TTATTGTATCGTG-TTTT-CAG--GTTTTTTC--G--AAAAA------A----------GG--------A-A--AAAAA
gi|3 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacga--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaaaaacaaataaaaaaaaaaccttgtcatcgatcttaatagtaatgtttttggtgattttatggtattattatatatattatctattattatatatgctgtgtaaagcacctttgagcataatgttgtatgaaaagggtgctataaaaataggtattattattttatt
gi|3 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaaatataagatattaccgtacacttacaaagcctttaactattgatgagtgttccagttttatatcaagcgattactagaagtatataaggcctgcccgaaatcttaggtcgacaaaacaatcggtcaatctagttgttccaaaaaagtcgaaccgttaactctatgggatcgattgtttcagatcaatagccccaaaaactgtggaatgcccttccaaaacatgtaaaggactgattagaacaatgtgtgcttcaaaaaaatcactgaaaacacaattttccatcaagcttttcaggactaattttcagttttaacaagattattttgtctgtctgactgtgcgtttttaatatttctattgctaatggtacaattttttaattttatgttttatatgttttaatgtattatatcgattactgtgtgtgcgtgcgtgtaccccattaccatttcaataatagctatatgttttaatttaagcgtatttattgtatcgtgttttcaggttttttcgaaaaaaggaaaaaaaaaaaaaaaaaaaaaaC--A--AAAAACAAAT-A----------AA--------A-A--AAAAAC-------------------C---------------TTGTCATC--GATCTTAATAGTAA-----TG-TTTT---------TGG-TGATTTT-AT-----G-GTA--TTATT-A-TA-T----AT--A-TTATCT-A-TTAT------TATA-TAT--------GC--TGTGTA--AAG---------C-ACCTTTG-A----GCAT-A--ATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---AAAAAT-A---G-G--T-AT----T-ATT-ATT-TTAaacaaaaaacaaataaaaaaaaaaccttgtcatcgatcttaatagtaatgtttttggtgattttatggtattattatatatattatctattattatatatgctgtgtaaagcacctttgagcataatgttgtatgaaaagggtgctataaaaataggtattattattttatt
gi|4 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaaatataagatattaccgtacacttacaaagcctttaactattgatgagtgttccagttttatatcaagcgattactagaagtatataaggcctgcccgaaatcttaggtcgacaaaacaatcggtcaatctagttgttccaaaaaagtcgaaccgttaactctatgggatcgattgtttcagatcaatagccccaaaaactgtggaatgcccttccaaaacatgtaaaggactgattagaacaatgtgtgcttcaaaaaaatcactgaaaacacaattttccatcaagcttttcaggactaattttcagttttaacaagattattttgtctgtctgactgtgcgtttttaatatttctattgctaatggtacaattttttaattttatgttttatatgttttaatgtattatatcgattactgtgtgtgcgtgcgtgtaccccattaccatttcaataatagctatatgttttaatttaagcgtatttattgtatcgtgttttcaggttttttcgaaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaa-GATGAG-TGT-CCA-GTTG-ATATCAA-GCGAT-----ACT-AGA-AGTA-AT-AAT--C-CGTGGCCCG-GAT---ACTTAGGT-C--G-AC-A-AAACA-TCGCG----TCA-CT-C-TAGG-T-TGTT--CC-AA----AAAG----------TCG-AAA-CCGTTCA-CT-T--ATGGGGAAT--CGA-TGT-TTCCAATTAATCAATAGCCCC-AAAACTGCGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--T---T----GAACTTCTTT-GTGC-TTT-C--AG---A-AAT-C---AC-------TG-AA--AAC-ACCC-ATTT-TTTTTCAT---CAA--GC-T-TTTCA-----GACTGA---TTT-CA----G--TTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--CG-TTT-TAATATTTCTAATT-TA--AT-GTACAATTTTT--TTATTT----------ATGTT-TACTGTTT----TAA-ATG-TTG-A-----ATTA----GAATCGA------GTACTG-T-T-TGCG-TGC--GGTTACCCCATTA-CATTTC-A-TATGCCTTTAAA-ACTGA-TG---T-TA-T--CTTATGTTTT-A-T---TT-AGC-GTAT---TTA-TGTATCTTGTTTAT-CAG------------------AA------A----------AA--------A-A--AACAAC-------------------C-------------C-TTGTCATCTTGATCTTAATAGTAA-----TG-TTTTTCATGT--TTGG-TGA---TTAT-----G-GTT--TAATT-A-TATT----CT--A-TTATCTCA-TTAT------TATATTAT--------GC--A-TGTA--AAG---------CTACCTTTG-A----GCGT-A--ATG-TTGT-ATTG--AAA-A---G--TGC-T-AT---ACCAAT-A-T-G-GT-T-ATGTGAT-ATT--TTATTAtt
gi|5 : atg----TACT-AGA-CGTATAT-AAG--C-C-TG-CCCG-AAA---TCGTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-ATTT-TTTTCCAT---CAA--A-TT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTA--CGTTTT-TAATCTTTCTATTACTA--ATGGTACAATTTTTAATT-TTCA---------ATTTT-TA-TGTTT----TAT-ATGTTTT-A-ATGTATTA----AAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTCAA-TATG-CTTTGAA-ACTGA-TG--TT-TATT--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATC-TGTTTTT-CAG--G-GTTTTC--A--GGAAG------A----------AA--------A-A--CAAA---------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTATAATACATGTA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTAtt
gi|6 : -GATGAG-TGT-CCATGTTTTATGTCAA-GCGATGTGGTAC--AGA-AGTATATTAAG--C----G-CCCG-AAA---TCTTAGGT-C--GGAC-A-AAACAATCG-G----TCA-CT-C-T-G--TGTGTTTGCC-TAGAGGAAAG----------TCGGAA--CCGTT-AGCTGT--ATGGGGA-TGCCGA-TGTGTTC--A--AA-CAATAGCCC--AAAACTGTGGAATGCCCGTTCCAAAACCATG-TATAAGG-GAT--TG--TA---GAAC-ACTGT-GTTCGTTT-CA-AA---G-GAT-CTCGAC-------TG-GAGAAACGA--C-A-TTCTTTTCCAT---CAA--GCCT-TT-CA----GGACTAA---TTTTCA----G-TTTAAC---AAAGA-TTAT-TTTTGT----CTG-T-CTG--ACTGTGC-CG-TTT-TAATATTT-TATTTCTA--ATGGTACAA---TT--TT-TTT----------ATTTT-TA-TGTTT----TAC-ATGTTTT-A-ATGTATTA----TAATCGA------GTACTGTTGTGTGCGTTGCGGGTGTA-CCCATTACCAATTCAA-TATG-CTTTCAA-ACTTATTGTTTT-TA-TTCTTTATGTTTTAA-T---TT--GC-GTAT---TTATTGTATCTTGTTTTT-CAA--G---------A--AGAAA------A----------GA--------A-AACAAAAACAAAAA--------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG--TTT--AT-T--TCGG-TGA-TTTTAT-----G-GTAT-TTATTAA-TA-T----CTTAA-TTA--T-A-TTAT------Tt
gi|7 : T----TACT-AGA-AGTATA---AG--C-C-TG-CCCG-AAA---TCTTGGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GACCAATAGCCC---AAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A--T-TTTTCCAT---CAA--GC-T-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--CG-TTT-TAATCTTTCTATTACTA--ATGGTACAG---TT--TT-TTT----------A--TT-TA-TGTTT----TAT-ATG-TTT-A-ATGTATTA----TAATCGAGTATATGTACTG-TGTGTTCG-TGC--GTGTACCCCATTACCATTTCAA-TATG-CTTTGAA-ATTGA-TG--TT-TATT--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTAAA--A--AAAAA------ACCAAACAAACAA--------A-A--AAAAACCAAACAAACAAAAAAAAACC-------------T-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--A--T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------ta
gi|8 : atCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCAACT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-ATT-CA-AG---A-AAT-C---AC-------TGAAA--AAC-A--C-A-TT-TTTTCCAT---CGA--GC-T-TTTCG----GGACTAAT--TTT-CA----G-TTT-AC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--CG-TTTAAAATATTTCTATTTCTA--ATGGTACAA----T--TT-TTT----------ATTTT-TA-TGTTT----TATAATGTTTT-A-ATGTATTA----TAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTCAA-T
gi|9 : AC-ATG-TA--TGGAGATCATG--TATGGAAAC-ACTGTAGTGC-TTTACACAGCACA-CATAC---ACATTGAAGTA-AA--AAC-A--CAA-TT-TTTACCATAGGCAAAGACTTAGTTCGAATTAGACTAATCTTTT-CAGTCTG-TTTAACATAAA-GATTTATATTT-ATAGTACTGATACTGC-ACTGTGT-CG-TTT-TAATATTTCTATTTCTATGGTGATACA------------TT----------ATTTTCCA-TGCTTGGAGTGT-ATA-ATT-AGATGTTCTACCAGTAGTCGT------GTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TTGTTGTTGTTTTTAAAAAAAAACCAAACAAACAAACAACCAAAACGCAAACAAAAACACATTTTTGTCAT
Alignments
lowQualScore : 1 1 1 11 1 1 1 1 1111 1 1111111111 1111111 1 1111 111 1 2222222222 111111 1 1111 333333333333 11111111111111111 555555555555555555555555555555555 2 111111 11111111 111111111
lowQualScore : 5 2 5 5 88 5 5 6 3 0 999 0 0 3 9999 8 5 5 5 5 1 5 8888 4 4 3 88 3 3 3 3 666 3 55 3 3 3 3 8888 4 4 4 99 4 55 4 8888 7777777777 4 99 8 8 8 55 4 55 4 4 99 55 0 55 5 4 8 66 4 66 66 777 4 4 4 4 4 777 4 4 777 4444444 4 66 4 55 4 8 4 777 55 2 4 0 2222 555 8 8888 4 777 4 4 4 4 8888 4 4 99 99 4 88 4 0 1 66 0 66 4 1111111111 11 777 4 4 55 55 11 222222 4 1 0 4 66 1 4 5 0 5 0 777 5 1111 4 555 3 3 555 1 3 666666666666 55 77777777777777777 99999999 2 33 444444444444444444444444444444444 3 44 77777 2 33 2 33 2 0 2 66666 2 66 5 2 2 5555 33 2 2 2 111111 3 33333333 44 44 222222222 3 2 6666 2 2 2 2 2 33 2 2 33 2 2 555 5 2 2 2 99 2 6666 2 2
lowQualScore : . . . . .. . . . . . ... . . . .... . . . . . . . .... . . . .. . . . . ... . .. . . . . .... . . . .. . .. . .... .......... . .. . . . .. . .. . . .. .. . .. . . . .. . .. .. ... . . . . . ... . . ... ....... . .. . .. . . . ... .. . . . .... ... . .... . ... . . . . .... . . .. .. . .. . . . .. . .. . .......... .. ... . . .. .. .. ...... . . . . .. . . . . . . ... . .... . ... . . ... . . ............ .. ................. ........ . .. ................................. . .. ..... . .. . .. . . . ..... . .. . . . .... .. . . . ...... . ........ .. .. ......... . . .... . . . . . .. . . .. . . ... . . . . .. . .... . .
lowQualScore : 0 5 0 0 00 5 5 7 2 8 000 0 0 2 8888 0 7 7 7 7 4 7 5555 0 0 6 66 6 6 6 6 444 6 00 6 6 6 6 5555 0 0 0 55 0 55 0 5555 5555555555 0 55 0 0 0 55 0 55 0 0 55 55 4 66 0 4 9 11 4 11 11 888 4 4 4 4 4 888 4 4 888 4444444 4 11 0 55 0 0 0 000 55 1 0 8 5555 000 0 5555 0 000 0 0 0 0 5555 0 0 55 55 0 88 0 6 0 11 0 11 0 5555555555 55 000 0 0 55 44 66 888888 4 1 1 4 11 1 4 0 2 0 0 000 0 4444 0 888 3 3 888 2 3 000000000000 99 99999999999999999 11111111 5 44 111111111111111111111111111111111 1 22 11111 9 77 7 77 7 4 4 77777 7 33 3 7 7 7777 77 7 7 9 111111 6 22222222 66 22 333333333 1 9 1111 9 9 9 9 9 99 9 9 99 9 9 000 7 9 9 9 66 9 1111 9 9
consensus : NNACAGTTCTGGGCAAGCCTCCAACGTGTTCGAGACACTGCCGCACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
Reference ( family-1787 ) : NNACAGTTCTGGGCAAGCCTCCAACGTGTTCGAGACACTGCCGCACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
gi|1 : ACAGTTCTGGGCAAGCCTCCAACGTGTTCGAAACACTGCCG-ACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-CTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGA-GTGT-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G--TT-TAATCTTTCTATTACTA--ATGGTACAATTTTT--TT-TTTTTATATTTTCATTTTT---A-TGT-T--TTAC-ATG-TTTAATGTATTATAATCAA------GTACTG-TGTGTACG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTATTAATTATGGTA-CTTCTTTTT-CAG--A-TTTTTC--ATTAAAAA------A----------AG--------A-A--AAAAAC-------------------C-------------C-TTATCATC--GATCTTAATAGTAAGTACTTT-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-C-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
gi|10 : aaTTAA-TATATT-AGT-ATAT---TTATTGTATC-TGTT-----------TTTTTC--AG-AAGAA------A----------AA--------A-A--AAAAAC-------------------CAAAAAAAAAAAAAC-TTGTCATC--GGTCTTAATAGTAA-----TGTTTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--ATTTATCT-ATTTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGTAA-TG--AAA-GG-GT--TGC-TAAT---A-AAAT-A-TGG-G--T-AT----T-ATTAATTATTA
gi|11 : ac-T--CTTATGTTTTAA-T---TT-AGCAGTAT---TTATTGTATCTTGTTTTTTCAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAA---------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTCT-AT-----G-GTT--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAA---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-----ATTATTA
gi|12 : at--AT-T--TTGG-TGATTTTTATCATGTGTGTGACTTATT-AATA-TGTGACT--A-TTATCT-A-AAATA-----TAAA-TATTCCATTCTGCTTCTTGTATCAAGACACACATGC-ACACGTG-ATGACGCGT-AACATGATTGT-A-TG--AAA-AGTGG--TGC-T-AG---ACAAAT-A-T-G-T--T-AT----T-ATT-ATCATTAt
gi|13 : aaatcctgtcatcgtgataactctgactacgagcatctttgtaT-CTT----------ATTTTT---A-TGT-T--TT-T-ATGT-------TATTATAATCGA------GTACTG-TGT-T-CG-TGC--GTA---CCCATTA-CATTTCAAATATG--TTTGAATACTGAGTG--TTGTA-T--TTTATGTTTTAATT---TT-AGC-GT-T---TTATTGTAT-TTGTTTTT-CAG--G-TTTTTCTGA--AACAA------A----------AA--------A-A--CAAAt
gi|14 : C--A--AAAAA------AC---------AA--------A-A--AAAAAC-------------------C-------------CCTTGTCATC--GATCTCA-TAGTAA-----TG-TTT---AT-T--TTGG-TGGTT---AT-----G-GTA--TTATTTA-TA-T----CT--A-T-ATCT-A-T-AT------T-TA-TAT--------GC--ATTGTA--AA----------C-AGCTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTtataaaaaccaaactacaaaaacaaaaaaaaatctaa
gi|15 : aaaaaaaaaaaaacaaaaaacaacaa--A--AAAAAAAACCAA----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACTTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTc
gi|16 : ataaaaGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AACTAATAGCCCC-AAAACTGTGGAAt
gi|17 : TAATAATAA-----TG-TTTT--AT-TGTTTGGATGATTTT-AT-----G-GTA--T-ATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGTAA-CATA-TTGT-A-TG--AAA-AG-GGTTTGCTT-AT---ACAATT-ATT-G-G--TAAT----TAATT-ATTATT
gi|18 : ---TT-AGT-ATAT---TTATTGTATCTTGTTTTT-CAGAAG---------A--AAAAA------A----------AAAACCAAAAA-A--AAAAAA-------------------C-------------C-TTGTCATC--GGTCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------tttatt
gi|19 : tatacttatataGTTACGACCATATAACACCAAAACTAAG------AGA---TT-AC-GTACACTTAC-AAGCTTCT--AC-AT-GATGAGCTGT-CCA-GTTT-ATATCAAGGCGAC----TACTGAGACAGTATAT-CAG--CTC-TG-CCCGAAAA---TCTTAG---T--G-ACAA-AAACAATCG-
gi|2 : tACAGTTCTGGGCAA-TCTCCAACGTGTTTCAGA-ACTGCCGCACGTC--CGTA-TGCA-GACCCCTCGTTACGAC-ATATAACACCAAGACTAAGA
gi|2 : gAGGAC--AAAATATAAGATACTTTAC-GTACACTTACAAAGCTT----AC-AT-GATGAG-TG--CCA--TTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-TCGG-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A----T--ATGGGGA-T--CGA-TGT-T-C--A--AATCAATAGCCCC-AAAACTGTGGAAGGCCC-TTCCAAA-C--TG-TA--AGG--AC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---AGAAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--G-TT-TTTCA----GGACTAA---TTTTCA----G-TTTAAC---GA-CA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TA-TATTTCTATTTCTA--ATG-TACAATTTTT---------------------------A-TGT-T--TTAG-ATGTTTTAATGTATTATAAT-GA------GTACTG-TGTGTGCG-TGC--GTGTACCC-AT-ACCATTTC-AATATG-CTTAAAA-CCTGA-TG--TT-AT-T--CTTATGATTTA--T---TT-AGC-GTAT---TTACTGTATCTTGTTTTT-CAGAAG---------A--AAAAA------A----------AA--------ACA--AAAAAA-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATC--A-TTAT------TATA-TAT--------GC--ATTGT---AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-A----ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTAgaactacattggttgcctgtgcagtataggacaaaatataagatactttacgtacacttacaaagcttacatgatgagtgccatttatatcaagcgattaatagaagtatataagcctgcccgaaatcttaggttcggacaaaacaatcggtcactctagttgttccaaaaagtcgaaccgttatatggggatcgatgttcaaatcaatagccccaaaactgtggaaggcccttccaaactgtaaggactgtagaacactgtgtgctttcaagagaatcactgaaaacacattttttccatcaagtttttcaggactaattttcagtttaacgacattattttgtctgtctgactgtgcgttttatatttctatttctaatgtacaatttttatgttttagatgttttaatgtattataatgagtactgtgtgtgcgtgcgtgtacccataccatttcaatatgcttaaaacctgatgttattcttatgatttatttagcgtatttactgtatcttgtttttcagaagaaaaaaaaaacaaaaaaaccttgtcatcgatcttaatagtaatgttttattttggtgattttatggtattattatatctattatcattattatatatgcattgtaagcacctttgagcgtacatgttgtatgaaaagggtgctaacaaatatggtattattattattatta
gi|20 : gacagttctgggcaatctccaacgtgtttcagaactgccgcacgtccgtatgcagacccctcgttacgacatataacaccaagactaagagaactacattggttgcctgtgcagtat---TT-AGT-ATAT---TTATTGTATCTTGTTTTT-CAG------------A--AGAAA------A----------AA--------A-A--AAAAACCAAAAAAAAAAAAAA----C-------------C-TTGTCATC--GGTCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-tta
gi|21 : atattatataTATAT-AAGAGC-C-TG-CCCG-AAAACATCTTAGGTAC--T-GC-ACAAACAACTG-AGATACCA-CTGCGTAGATC-TATT--CC-AA----AAAAGGTATTCGTTTCA-AATACCGTT-AGCT-TCCATCGA------CGA-TGT-TTCA-A--GACTAATAGGCC
gi|22 : caAC-A--C-A-TT-TTTTCCAT---CAA--GC---TTTCAT---GGACT-A---TT--------A-TTTAAT---AA-GA--TAT-TTT-GT-----TG-T-CGGGAGCTGTGTCC-G--TT-TAATCTTTCTATT
gi|23 : --ATTGTA--AAG---------C-ACCTTTGAA----GCGT-A-CATG--TGT-A-TG--AAAGAG-GA--T-C-T-GTATAACAAATAA-T-GTGTTT-AT----T-ATT-ATTATTAaatcccatgg
gi|25 : TGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG--TGT-A-TG--AAA-GG-GT--CGC-T-AT---A-AAATAA-T-G-GT-T-AT----T-ATT-ATTATTttat
gi|26 : TTTG-A----GCAT-A-CATG-TTGT-A-TGGAAAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTA
gi|3 : AATATAAGATA-TT-ACCGTACACTTACAAAGCCT-TTAACTATTGATGAG-TGTTCCA-GTTTTATATCAA-GCGAT----TACT-AGA-AGTATAT-AAGG-C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-AT-C-TAG--T-TGTT--CCAAA----AAAG----------TCG-AA--CCGTTAA-CTCT--AT-GGGA-T--CGATTGT-TTC--A--GATCAATAGCCCCAAAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AAG-GAC--TGATTA---GAAC-AATGT-GTGC-TTC-AA-AA---A-AAT-C---AC-------TG-AA--AAC-A--C-A--A-TTTTCCAT---CAA--GC-T-TTTCA----GGACTAAT--TTT-CA----GTTTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-GTTTT-TAATATTTCTATTGCTA--ATGGTACAA----T--TT-TTT----------AATTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTAT-ATCGA------TTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATA---------------A-TA--GC-TA------TATGTTTTAA-T---TTAAGC-GTAT---TTATTGTATCGTG-TTTT-CAG--GTTTTTTC--G--AAAAA------A----------GG--------A-A--AAAAA
gi|3 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacga--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaaaaacaaataaaaaaaaaaccttgtcatcgatcttaatagtaatgtttttggtgattttatggtattattatatatattatctattattatatatgctgtgtaaagcacctttgagcataatgttgtatgaaaagggtgctataaaaataggtattattattttatt
gi|3 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaaatataagatattaccgtacacttacaaagcctttaactattgatgagtgttccagttttatatcaagcgattactagaagtatataaggcctgcccgaaatcttaggtcgacaaaacaatcggtcaatctagttgttccaaaaaagtcgaaccgttaactctatgggatcgattgtttcagatcaatagccccaaaaactgtggaatgcccttccaaaacatgtaaaggactgattagaacaatgtgtgcttcaaaaaaatcactgaaaacacaattttccatcaagcttttcaggactaattttcagttttaacaagattattttgtctgtctgactgtgcgtttttaatatttctattgctaatggtacaattttttaattttatgttttatatgttttaatgtattatatcgattactgtgtgtgcgtgcgtgtaccccattaccatttcaataatagctatatgttttaatttaagcgtatttattgtatcgtgttttcaggttttttcgaaaaaaggaaaaaaaaaaaaaaaaaaaaaaC--A--AAAAACAAAT-A----------AA--------A-A--AAAAAC-------------------C---------------TTGTCATC--GATCTTAATAGTAA-----TG-TTTT---------TGG-TGATTTT-AT-----G-GTA--TTATT-A-TA-T----AT--A-TTATCT-A-TTAT------TATA-TAT--------GC--TGTGTA--AAG---------C-ACCTTTG-A----GCAT-A--ATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---AAAAAT-A---G-G--T-AT----T-ATT-ATT-TTAaacaaaaaacaaataaaaaaaaaaccttgtcatcgatcttaatagtaatgtttttggtgattttatggtattattatatatattatctattattatatatgctgtgtaaagcacctttgagcataatgttgtatgaaaagggtgctataaaaataggtattattattttatt
gi|4 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaaatataagatattaccgtacacttacaaagcctttaactattgatgagtgttccagttttatatcaagcgattactagaagtatataaggcctgcccgaaatcttaggtcgacaaaacaatcggtcaatctagttgttccaaaaaagtcgaaccgttaactctatgggatcgattgtttcagatcaatagccccaaaaactgtggaatgcccttccaaaacatgtaaaggactgattagaacaatgtgtgcttcaaaaaaatcactgaaaacacaattttccatcaagcttttcaggactaattttcagttttaacaagattattttgtctgtctgactgtgcgtttttaatatttctattgctaatggtacaattttttaattttatgttttatatgttttaatgtattatatcgattactgtgtgtgcgtgcgtgtaccccattaccatttcaataatagctatatgttttaatttaagcgtatttattgtatcgtgttttcaggttttttcgaaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaa-GATGAG-TGT-CCA-GTTG-ATATCAA-GCGAT-----ACT-AGA-AGTA-AT-AAT--C-CGTGGCCCG-GAT---ACTTAGGT-C--G-AC-A-AAACA-TCGCG----TCA-CT-C-TAGG-T-TGTT--CC-AA----AAAG----------TCG-AAA-CCGTTCA-CT-T--ATGGGGAAT--CGA-TGT-TTCCAATTAATCAATAGCCCC-AAAACTGCGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--T---T----GAACTTCTTT-GTGC-TTT-C--AG---A-AAT-C---AC-------TG-AA--AAC-ACCC-ATTT-TTTTTCAT---CAA--GC-T-TTTCA-----GACTGA---TTT-CA----G--TTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTAATT-TA--AT-GTACAATTTTT--TTATTT----------ATGTTT---ACTGT-T--TTAA-ATGT-----TGAATTAGAATCGA------GTACTG-T-T-TGCG-TGC--GGTTACCCCATTA-CATTTC--ATATGCCTTTAAA-ACTGA-TG---T-TA-T--CTTATGTTTT-A-T---TT-AGC-GTAT---TTA-TGTATCTTGTTTAT-CAG------------------AA------A----------AA--------A-A--AACAAC-------------------C-------------C-TTGTCATCTTGATCTTAATAGTAA-----TG-TTTTTCATGT--TTGG-TGA---TTAT-----G-GTT--TAATT-A-TATT----CT--A-TTATCTCA-TTAT------TATATTAT--------GC--A-TGTA--AAG---------CTACCTTTG-A----GCGT-A--ATG-TTGT-ATTG--AAA-A---G--TGC-T-AT---ACCAAT-A-T-G-GT-T-ATGTGAT-ATT--TTATTAtt
gi|5 : atg----TACT-AGA-CGTATAT-AAG--C-C-TG-CCCG-AAA---TCGTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-ATTT-TTTTCCAT---CAA--A-TT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTA--C-GTTTT-TAATCTTTCTATTACTA--ATGGTACAATTTTTAATT-TTCA---------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTAAAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TATT--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATC-TGTTTTT-CAG--G-GTTTTC--A--GGAAG------A----------AA--------A-A--CAAA---------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTATAATACATGTA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTAtt
gi|6 : -GATGAG-TGT-CCATGTTTTATGTCAA-GCGATGTGGTAC--AGA-AGTATATTAAG--C----G-CCCG-AAA---TCTTAGGT-C--GGAC-A-AAACAATCG-G----TCA-CT-C-T-G--TGTGTTTGCC-TAGAGGAAAG----------TCGGAA--CCGTT-AGCTGT--ATGGGGA-TGCCGA-TGTGTTC--A--AA-CAATAGCCC--AAAACTGTGGAATGCCCGTTCCAAAACCATG-TATAAGG-GAT--TG--TA---GAAC-ACTGT-GTTCGTTT-CA-AA---G-GAT-CTCGAC-------TG-GAGAAACGA--C-A-TTCTTTTCCAT---CAA--GCCT-TT-CA----GGACTAA---TTTTCA----G-TTTAAC---AAAGA-TTAT-TTTTGT----CTG-T-CTG--ACTGTG--CCG-TTT-TAATATTT-TATTTCTA--ATGGTACAATTTT------TTT----------ATTTTT---A-TGT-T--TTAC-ATGTTTTAATGTATTATAATCGA------GTACTGTTGTGTGCGTTGCGGGTGTA-CCCATTACCAATTC-AATATG-CTTTCAA-ACTTATTGTTTT-TA-TTCTTTATGTTTTAA-T---TT--GC-GTAT---TTATTGTATCTTGTTTTT-CAA--G---------A--AGAAA------A----------GA--------A-AACAAAAACAAAAA--------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG--TTT--AT-T--TCGG-TGA-TTTTAT-----G-GTAT-TTATTAA-TA-T----CTTAA-TTA--T-A-TTAT------Tt
gi|7 : T----TACT-AGA-AGTATA---AG--C-C-TG-CCCG-AAA---TCTTGGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GACCAATAGCCC---AAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTT-CCAT---CAA--GCTT-TT-CA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATCTTTCTATTACTA--ATGGTACAG---TT--TT-TTT----------A--TTT---A-TGT-T--TTAT-ATG-TTTAATGTATTATAATCGAGTATATGTACTG-TGTGTTCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ATTGA-TG--TT-TATT--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTAAA--A--AAAAA------ACCAAACAAACAA--------A-A--AAAAACCAAACAAACAAAAAAAAACC-------------T-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--A--T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------ta
gi|8 : atCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCAACT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-ATT-CA-AG---A-AAT-C---AC-------TGAAA--AAC-A--C-A-TT-TTTTCCAT---CGA--GC-T-TTTCG----GGACTAAT--TTT-CA----G-TTT-AC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTTAAAATATTTCTATTTCTA--ATGGTACAA----T--TT-TTT----------ATTTTT---A-TGT-T--TTATAATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AAT
gi|9 : AC-ATG-TA--TGGAGATCATG--TATGGAAAC-ACTGTAGTGC-TTTACACAGCACA-CATAC---ACATTGAAGTA-AA--AAC-A--CAA-TT-TTTACCATAGGCAAAGACTTAGTTCGAATTAGACTAATCTTTT-CAGTCTG-TTTAACATAAA-GATTTATATTT-ATAGTACTGATACTGC-ACTGTGT-C-G-TTT-TAATATTTCTATTTCTATGGTGATACA--TTAT--TT-TCC----------ATGCTTGGAG-TGTATAATTAG-ATGTTCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TTGTTGTTGTTTTTAAAAAAAAACCAAACAAACAAACAACCAAAACGCAAACAAAAACACATTTTTGTCAT
Alignments
lowQualScore : 1 1 1 11 1 1 1 1 1111 1 1111111111 1111111 1 1111 111 1 2222222222 111111 1 1111 333333333333 11111111111111111 555555555555555555555555555555555 2 111111 11111111 111111111
lowQualScore : 5 2 5 5 88 5 5 6 3 0 999 0 0 3 9999 8 5 5 5 5 1 5 8888 4 4 3 88 3 3 3 3 666 3 55 3 3 3 3 8888 4 4 4 99 4 55 4 8888 7777777777 4 99 8 8 8 55 4 55 4 4 99 55 0 55 5 4 8 66 4 66 66 777 4 4 4 4 4 777 4 4 777 4444444 4 66 4 55 4 8 4 777 55 2 4 0 2222 555 8 8888 4 777 4 4 4 4 8888 4 4 99 99 4 88 4 0 1 66 0 66 4 1111111111 11 777 4 4 55 55 11 222222 4 1 0 4 66 1 4 5 0 5 0 777 5 1111 4 555 3 3 555 1 3 666666666666 55 77777777777777777 99999999 2 33 444444444444444444444444444444444 3 44 77777 2 33 2 33 2 0 2 66666 2 66 5 2 2 5555 33 2 2 2 111111 3 33333333 44 44 222222222 3 2 6666 2 2 2 2 2 33 2 2 33 2 2 555 5 2 2 2 99 2 6666 2 2
lowQualScore : . . . . .. . . . . . ... . . . .... . . . . . . . .... . . . .. . . . . ... . .. . . . . .... . . . .. . .. . .... .......... . .. . . . .. . .. . . .. .. . .. . . . .. . .. .. ... . . . . . ... . . ... ....... . .. . .. . . . ... .. . . . .... ... . .... . ... . . . . .... . . .. .. . .. . . . .. . .. . .......... .. ... . . .. .. .. ...... . . . . .. . . . . . . ... . .... . ... . . ... . . ............ .. ................. ........ . .. ................................. . .. ..... . .. . .. . . . ..... . .. . . . .... .. . . . ...... . ........ .. .. ......... . . .... . . . . . .. . . .. . . ... . . . . .. . .... . .
lowQualScore : 0 5 0 0 00 5 5 7 2 8 000 0 0 2 8888 0 7 7 7 7 4 7 5555 0 0 6 66 6 6 6 6 444 6 00 6 6 6 6 5555 0 0 0 55 0 55 0 5555 5555555555 0 55 0 0 0 55 0 55 0 0 55 55 4 66 0 4 9 11 4 11 11 888 4 4 4 4 4 888 4 4 888 4444444 4 11 0 55 0 0 0 000 55 1 0 8 5555 000 0 5555 0 000 0 0 0 0 5555 0 0 55 55 0 88 0 6 0 11 0 11 0 5555555555 55 000 0 0 55 44 66 888888 4 1 1 4 11 1 4 0 2 0 0 000 0 4444 0 888 3 3 888 2 3 000000000000 99 99999999999999999 11111111 5 44 111111111111111111111111111111111 1 22 11111 9 77 7 77 7 4 4 77777 7 33 3 7 7 7777 77 7 7 9 111111 6 22222222 66 22 333333333 1 9 1111 9 9 9 9 9 99 9 9 99 9 9 000 7 9 9 9 66 9 1111 9 9
consensus : NNACAGTTCTGGGCAAGCCTCCAACGTGTTCGAGACACTGCCGCACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
Reference ( family-1787 ) : NNACAGTTCTGGGCAAGCCTCCAACGTGTTCGAGACACTGCCGCACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
gi|1 : ACAGTTCTGGGCAAGCCTCCAACGTGTTCGAAACACTGCCG-ACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-CTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGA-GTGT-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G--TT-TAATCTTTCTATTACTA--ATGGTACAATTTTT--TT-TTTTTATATTTTCATTTTT---A-TGT-T--TTAC-ATG-TTTAATGTATTATAATCAA------GTACTG-TGTGTACG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTATTAATTATGGTA-CTTCTTTTT-CAG--A-TTTTTC--ATTAAAAA------A----------AG--------A-A--AAAAAC-------------------C-------------C-TTATCATC--GATCTTAATAGTAAGTACTTT-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-C-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
gi|10 : aaTTAA-TATATT-AGT-ATAT---TTATTGTATC-TGTT-----------TTTTTC--AG-AAGAA------A----------AA--------A-A--AAAAAC-------------------CAAAAAAAAAAAAAC-TTGTCATC--GGTCTTAATAGTAA-----TGTTTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--ATTTATCT-ATTTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGTAA-TG--AAA-GG-GT--TGC-TAAT---A-AAAT-A-TGG-G--T-AT----T-ATTAATTATTA
gi|11 : ac-T--CTTATGTTTTAA-T---TT-AGCAGTAT---TTATTGTATCTTGTTTTTTCAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAA---------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTCT-AT-----G-GTT--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAA---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-----ATTATTA
gi|12 : at--AT-T--TTGG-TGATTTTTATCATGTGTGTGACTTATT-AATA-TGTGACT--A-TTATCT-A-AAATA-----TAAA-TATTCCATTCTGCTTCTTGTATCAAGACACACATGC-ACACGTG-ATGACGCGT-AACATGATTGT-A-TG--AAA-AGTGG--TGC-T-AG---ACAAAT-A-T-G-T--T-AT----T-ATT-ATCATTAt
gi|13 : aaatcctgtcatcgtgataactctgactacgagcatctttgtaT-CTT----------ATTTTT---A-TGT-T--TT-T-ATGT-------TATTATAATCGA------GTACTG-TGT-T-CG-TGC--GTA---CCCATTA-CATTTCAAATATG--TTTGAATACTGAGTG--TTGTA-T--TTTATGTTTTAATT---TT-AGC-GT-T---TTATTGTAT-TTGTTTTT-CAG--G-TTTTTCTGA--AACAA------A----------AA--------A-A--CAAAt
gi|14 : C--A--AAAAA------AC---------AA--------A-A--AAAAAC-------------------C-------------CCTTGTCATC--GATCTCA-TAGTAA-----TG-TTT---AT-T--TTGG-TGGTT---AT-----G-GTA--TTATTTA-TA-T----CT--A-T-ATCT-A-T-AT------T-TA-TAT--------GC--ATTGTA--AA----------C-AGCTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTtataaaaaccaaactacaaaaacaaaaaaaaatctaa
gi|15 : aaaaaaaaaaaaacaaaaaacaacaa--A--AAAAAAAACCAA----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACTTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTc
gi|16 : ataaaaGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AACTAATAGCCCC-AAAACTGTGGAAt
gi|17 : TAATAATAA-----TG-TTTT--AT-TGTTTGGATGATTTT-AT-----G-GTA--T-ATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGTAA-CATA-TTGT-A-TG--AAA-AG-GGTTTGCTT-AT---ACAATT-ATT-G-G--TAAT----TAATT-ATTATT
gi|18 : ---TT-AGT-ATAT---TTATTGTATCTTGTTTTT-CAGAAG---------A--AAAAA------A----------AAAACCAAAAA-A--AAAAAA-------------------C-------------C-TTGTCATC--GGTCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------tttatt
gi|19 : tatacttatataGTTACGACCATATAACACCAAAACTAAG------AGA---TT-AC-GTACACTTAC-AAGCTTCT--AC-AT-GATGAGCTGT-CCA-GTTT-ATATCAAGGCGAC----TACTGAGACAGTATAT-CAG--CTC-TG-CCCGAAAA---TCTTAG---T--G-ACAA-AAACAATCG-
gi|2 : tACAGTTCTGGGCAA-TCTCCAACGTGTTTCAGA-ACTGCCGCACGTC--CGTA-TGCA-GACCCCTCGTTACGAC-ATATAACACCAAGACTAAGA
gi|2 : gAGGAC--AAAATATAAGATACTTTAC-GTACACTTACAAAGCTT----AC-AT-GATGAG-TG--CCA--TTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-TCGG-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A----T--ATGGGGA-T--CGA-TGT-T-C--A--AATCAATAGCCCC-AAAACTGTGGAAGGCCC-TTCCAAA-C--TG-TA--AGG--AC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---AGAAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--G-TT-TTTCA----GGACTAA---TTTTCA----G-TTTAAC---GA-CA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TA-TATTTCTATTTCTA--ATG-TACAATTTTT---------------------------A-TGT-T--TTAG-ATGTTTTAATGTATTATAAT-GA------GTACTG-TGTGTGCG-TGC--GTGTACCC-AT-ACCATTTC-AATATG-CTTAAAA-CCTGA-TG--TT-AT-T--CTTATGATTTA--T---TT-AGC-GTAT---TTACTGTATCTTGTTTTT-CAGAAG---------A--AAAAA------A----------AA--------ACA--AAAAAA-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATC--A-TTAT------TATA-TAT--------GC--ATTGT---AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-A----ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTAgaactacattggttgcctgtgcagtataggacaaaatataagatactttacgtacacttacaaagcttacatgatgagtgccatttatatcaagcgattaatagaagtatataagcctgcccgaaatcttaggttcggacaaaacaatcggtcactctagttgttccaaaaagtcgaaccgttatatggggatcgatgttcaaatcaatagccccaaaactgtggaaggcccttccaaactgtaaggactgtagaacactgtgtgctttcaagagaatcactgaaaacacattttttccatcaagtttttcaggactaattttcagtttaacgacattattttgtctgtctgactgtgcgttttatatttctatttctaatgtacaatttttatgttttagatgttttaatgtattataatgagtactgtgtgtgcgtgcgtgtacccataccatttcaatatgcttaaaacctgatgttattcttatgatttatttagcgtatttactgtatcttgtttttcagaagaaaaaaaaaacaaaaaaaccttgtcatcgatcttaatagtaatgttttattttggtgattttatggtattattatatctattatcattattatatatgcattgtaagcacctttgagcgtacatgttgtatgaaaagggtgctaacaaatatggtattattattattatta
gi|20 : gacagttctgggcaatctccaacgtgtttcagaactgccgcacgtccgtatgcagacccctcgttacgacatataacaccaagactaagagaactacattggttgcctgtgcagtat---TT-AGT-ATAT---TTATTGTATCTTGTTTTT-CAG------------A--AGAAA------A----------AA--------A-A--AAAAACCAAAAAAAAAAAAAA----C-------------C-TTGTCATC--GGTCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-tta
gi|21 : atattatataTATAT-AAGAGC-C-TG-CCCG-AAAACATCTTAGGTAC--T-GC-ACAAACAACTG-AGATACCA-CTGCGTAGATC-TATT--CC-AA----AAAAGGTATTCGTTTCA-AATACCGTT-AGCT-TCCATCGA------CGA-TGT-TTCA-A--GACTAATAGGCC
gi|22 : caAC-A--C-A-TT-TTTTCCAT---CAA--GC---TTTCAT---GGACT-A---TT--------A-TTTAAT---AA-GA--TAT-TTT-GT-----TG-T-CGGGAGCTGTGTCC-G--TT-TAATCTTTCTATT
gi|23 : --ATTGTA--AAG---------C-ACCTTTGAA----GCGT-A-CATG--TGT-A-TG--AAAGAG-GA--T-C-T-GTATAACAAATAA-T-GTGTTT-AT----T-ATT-ATTATTAaatcccatgg
gi|25 : TGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG--TGT-A-TG--AAA-GG-GT--CGC-T-AT---A-AAATAA-T-G-GT-T-AT----T-ATT-ATTATTttat
gi|26 : TTTG-A----GCAT-A-CATG-TTGT-A-TGGAAAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTA
gi|3 : AATATAAGATA-TT-ACCGTACACTTACAAAGCCT-TTAACTATTGATGAG-TGTTCCA-GTTTTATATCAA-GCGAT----TACT-AGA-AGTATAT-AAGG-C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-AT-C-TAG--T-TGTT--CCAAA----AAAG----------TCG-AA--CCGTTAA-CTCT--AT-GGGA-T--CGATTGT-TTC--A--GATCAATAGCCCCAAAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AAG-GAC--TGATTA---GAAC-AATGT-GTGC-TTC-AA-AA---A-AAT-C---AC-------TG-AA--AAC-A--C-A--A-TTTTCCAT---CAA--GC-T-TTTCA----GGACTAAT--TTT-CA----GTTTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-GTTTT-TAATATTTCTATTGCTA--ATGGTACAA----T--TT-TTT----------AATTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTAT-ATCGA------TTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATA---------------A-TA--GC-TA------TATGTTTTAA-T---TTAAGC-GTAT---TTATTGTATCGTG-TTTT-CAG--GTTTTTTC--G--AAAAA------A----------GG--------A-A--AAAAA
gi|3 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacga--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaaaaacaaataaaaaaaaaaccttgtcatcgatcttaatagtaatgtttttggtgattttatggtattattatatatattatctattattatatatgctgtgtaaagcacctttgagcataatgttgtatgaaaagggtgctataaaaataggtattattattttatt
gi|3 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaaatataagatattaccgtacacttacaaagcctttaactattgatgagtgttccagttttatatcaagcgattactagaagtatataaggcctgcccgaaatcttaggtcgacaaaacaatcggtcaatctagttgttccaaaaaagtcgaaccgttaactctatgggatcgattgtttcagatcaatagccccaaaaactgtggaatgcccttccaaaacatgtaaaggactgattagaacaatgtgtgcttcaaaaaaatcactgaaaacacaattttccatcaagcttttcaggactaattttcagttttaacaagattattttgtctgtctgactgtgcgtttttaatatttctattgctaatggtacaattttttaattttatgttttatatgttttaatgtattatatcgattactgtgtgtgcgtgcgtgtaccccattaccatttcaataatagctatatgttttaatttaagcgtatttattgtatcgtgttttcaggttttttcgaaaaaaggaaaaaaaaaaaaaaaaaaaaaaC--A--AAAAACAAAT-A----------AA--------A-A--AAAAAC-------------------C---------------TTGTCATC--GATCTTAATAGTAA-----TG-TTTT---------TGG-TGATTTT-AT-----G-GTA--TTATT-A-TA-T----AT--A-TTATCT-A-TTAT------TATA-TAT--------GC--TGTGTA--AAG---------C-ACCTTTG-A----GCAT-A--ATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---AAAAAT-A---G-G--T-AT----T-ATT-ATT-TTAaacaaaaaacaaataaaaaaaaaaccttgtcatcgatcttaatagtaatgtttttggtgattttatggtattattatatatattatctattattatatatgctgtgtaaagcacctttgagcataatgttgtatgaaaagggtgctataaaaataggtattattattttatt
gi|4 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaaatataagatattaccgtacacttacaaagcctttaactattgatgagtgttccagttttatatcaagcgattactagaagtatataaggcctgcccgaaatcttaggtcgacaaaacaatcggtcaatctagttgttccaaaaaagtcgaaccgttaactctatgggatcgattgtttcagatcaatagccccaaaaactgtggaatgcccttccaaaacatgtaaaggactgattagaacaatgtgtgcttcaaaaaaatcactgaaaacacaattttccatcaagcttttcaggactaattttcagttttaacaagattattttgtctgtctgactgtgcgtttttaatatttctattgctaatggtacaattttttaattttatgttttatatgttttaatgtattatatcgattactgtgtgtgcgtgcgtgtaccccattaccatttcaataatagctatatgttttaatttaagcgtatttattgtatcgtgttttcaggttttttcgaaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaa-GATGAG-TGT-CCA-GTTG-ATATCAA-GCGAT-----ACT-AGA-AGTA-AT-AAT--C-CGTGGCCCG-GAT---ACTTAGGT-C--G-AC-A-AAACA-TCGCG----TCA-CT-C-TAGG-T-TGTT--CC-AA----AAAG----------TCG-AAA-CCGTTCA-CT-T--ATGGGGAAT--CGA-TGT-TTCCAATTAATCAATAGCCCC-AAAACTGCGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--T---T----GAACTTCTTT-GTGC-TTT-C--AG---A-AAT-C---AC-------TG-AA--AAC-ACCC-ATTT-TTTTTCAT---CAA--GC-T-TTTCA-----GACTGA---TTT-CA----G--TTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTAATT-TA--AT-GTACAATTTTT--TTATTT----------ATGTTT---ACTGT-T--TTAA-ATGT-----TGAATTAGAATCGA------GTACTG-T-T-TGCG-TGC--GGTTACCCCATTA-CATTTC--ATATGCCTTTAAA-ACTGA-TG---T-TA-T--CTTATGTTTT-A-T---TT-AGC-GTAT---TTA-TGTATCTTGTTTAT-CAG------------------AA------A----------AA--------A-A--AACAAC-------------------C-------------C-TTGTCATCTTGATCTTAATAGTAA-----TG-TTTTTCATGT--TTGG-TGA---TTAT-----G-GTT--TAATT-A-TATT----CT--A-TTATCTCA-TTAT------TATATTAT--------GC--A-TGTA--AAG---------CTACCTTTG-A----GCGT-A--ATG-TTGT-ATTG--AAA-A---G--TGC-T-AT---ACCAAT-A-T-G-GT-T-ATGTGAT-ATT--TTATTAtt
gi|5 : atg----TACT-AGA-CGTATAT-AAG--C-C-TG-CCCG-AAA---TCGTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-ATTT-TTTTCCAT---CAA--A-TT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTA--C-GTTTT-TAATCTTTCTATTACTA--ATGGTACAATTTTTAATT-TTCA---------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTAAAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TATT--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATC-TGTTTTT-CAG--G-GTTTTC--A--GGAAG------A----------AA--------A-A--CAAA---------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTATAATACATGTA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTAtt
gi|6 : -GATGAG-TGT-CCATGTTTTATGTCAA-GCGATGTGGTAC--AGA-AGTATATTAAG--C----G-CCCG-AAA---TCTTAGGT-C--GGAC-A-AAACAATCG-G----TCA-CT-C-T-G--TGTGTTTGCC-TAGAGGAAAG----------TCGGAA--CCGTT-AGCTGT--ATGGGGA-TGCCGA-TGTGTTC--A--AA-CAATAGCCC--AAAACTGTGGAATGCCCGTTCCAAAACCATG-TATAAGG-GAT--TG--TA---GAAC-ACTGT-GTTCGTTT-CA-AA---G-GAT-CTCGAC-------TG-GAGAAACGA--C-A-TTCTTTTCCAT---CAA--GCCT-TT-CA----GGACTAA---TTTTCA----G-TTTAAC---AAAGA-TTAT-TTTTGT----CTG-T-CTG--ACTGTG--CCG-TTT-TAATATTT-TATTTCTA--ATGGTACAATTTT------TTT----------ATTTTT---A-TGT-T--TTAC-ATGTTTTAATGTATTATAATCGA------GTACTGTTGTGTGCGTTGCGGGTGTA-CCCATTACCAATTC-AATATG-CTTTCAA-ACTTATTGTTTT-TA-TTCTTTATGTTTTAA-T---TT--GC-GTAT---TTATTGTATCTTGTTTTT-CAA--G---------A--AGAAA------A----------GA--------A-AACAAAAACAAAAA--------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG--TTT--AT-T--TCGG-TGA-TTTTAT-----G-GTAT-TTATTAA-TA-T----CTTAA-TTA--T-A-TTAT------Tt
gi|7 : T----TACT-AGA-AGTATA---AG--C-C-TG-CCCG-AAA---TCTTGGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GACCAATAGCCC---AAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTT-CCAT---CAA--GCTT-TT-CA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATCTTTCTATTACTA--ATGGTACAG---TT--TT-TTT----------A--TTT---A-TGT-T--TTAT-ATG-TTTAATGTATTATAATCGAGTATATGTACTG-TGTGTTCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ATTGA-TG--TT-TATT--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTAAA--A--AAAAA------ACCAAACAAACAA--------A-A--AAAAACCAAACAAACAAAAAAAAACC-------------T-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--A--T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------ta
gi|8 : atCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCAACT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-ATT-CA-AG---A-AAT-C---AC-------TGAAA--AAC-A--C-A-TT-TTTTCCAT---CGA--GC-T-TTTCG----GGACTAAT--TTT-CA----G-TTT-AC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTTAAAATATTTCTATTTCTA--ATGGTACAA----T--TT-TTT----------ATTTTT---A-TGT-T--TTATAATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AAT
gi|9 : AC-ATG-TA--TGGAGATCATG--TATGGAAAC-ACTGTAGTGC-TTTACACAGCACA-CATAC---ACATTGAAGTA-AA--AAC-A--CAA-TT-TTTACCATAGGCAAAGACTTAGTTCGAATTAGACTAATCTTTT-CAGTCTG-TTTAACATAAA-GATTTATATTT-ATAGTACTGATACTGC-ACTGTGT-C-G-TTT-TAATATTTCTATTTCTATGGTGATACA--TTAT--TT-TCC----------ATGCTTGGAG-TGTATAATTAG-ATGTTCTA
blockSeqs : . C . C . . . C T TAC T C A TTA T T C T T T G GTGG G C T AG T G G A ACA A CG G A C C GATA A G G AT G TG A GAGG GGTATTCGTT G TA A G C CC A GC T G CA TT CA G C T TA A CA AT TGG T A G A C CAC G A TCG ATTGAAG A GA G CC A T C AGG AG T A AATT TCT T GTCT T ATA A T A T AGTA A A GA TC C TT A T TG T AA A A TT GGA C A AA TA TT GTATAT T G T GG C A C T G TTT G TTC T ATA A A . T T GTTTTTCTG G ACCAAACAAAC AACCAAAA C AC CAAACAAACAAAAAAAAACC C TT . T TC G GT A T T CATGT T AC T A T GTGA TA T C T AATACA T TCCATTCT TT TC ACACACATG T A TGAC A A A A T GA G T TT T A ATA A T G T TT A GTGA A A
blockSeqs : . T TA . . A CT . . . . . T . . . . . G . . . . . . . . . . . . . . . G . . . . . . A C G G . . . . . A . C . . T . . . . . . . . . . . . . . . . . . . . T . . . T . T T T . . . . . . . . . . C T . TT . G . T . . . AT . . . . T TT . . G . . C . . . T T . TT . . . . . T . GTTTTTTC . AAACCAA . . . CAAAAAAAAAAAAAAC . . . . . . . . T T . . T A . . . . . . . A . . . . . . . . . . . . . . . . . . . . A . . . T . . . .
blockSeqs : . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . T . . . . . . . . . . . . . . T . T . T . . . TG . . . . G TT . . G . . C . . . . T . TT . . . . . T . GTTTTTC . CAAATA . . . CAAAAAAAAAAAAA . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . T . A . T . . . TT . . . . T TT . . G . . C . . . . G . T . . . . . T . GGTTTTC . AC . . . AAAAAC . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . T . T . . . . . TT . . . . A TT . . G . . C . . . . T . T . . . . . T . GTTTAAA . A . . . C . . . . . . . . T T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . A . . . . . TT . . . . T TT . . G . . C . . . . T . T . . . . . G . TTTTTC . A . . . C . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . TG . . . . C T . . . . . . . . . . . . T . . . . . T . AAG . A . . . C . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . T . . . . . . . . . . T T . . . . . . . . . . . . . T . AAG . A . . . C . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G T . . . . . T . G . A . . . C . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A . . . C . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . A . . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . A . . .
blockSeqCons : T* ********** TT *** ** *****
originalCons : NNACAGTTCTGGGCAAGCCTCCAACGTGTTCGAGACACTGCCGCACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
finalCons : NNACAGTTCTGGGCAAGCCTCCAACGTGTTCGAGACACTGCCGCACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-GT-TT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TTGTTGTTGTTTTTAAAAAAAAACCAAACAAACAAACAACCAAAACGCAAACAAAAACACATTTTTGTCAT
Alignments
lowQualScore : 1 1 1 11 1 1 1 1 1111 1 1111111111 1111111 1 1111 111 1 2222222222 111111 1 1111 333333333333 11111111111111111 555555555555555555555555555555555 2 111111 11111111 111111111
lowQualScore : 5 2 5 5 88 5 5 6 3 0 999 0 0 3 9999 8 5 5 5 5 1 5 8888 4 4 3 88 3 3 3 3 666 3 55 3 3 3 3 8888 4 4 4 99 4 55 4 8888 7777777777 4 99 8 8 8 55 4 55 4 4 99 55 0 55 5 4 8 66 4 66 66 777 4 4 4 4 4 777 4 4 777 4444444 4 66 4 55 4 8 4 777 55 2 4 0 2222 555 8 8888 4 777 4 4 4 4 8888 4 4 99 99 4 88 4 0 1 66 0 66 4 1111111111 11 777 4 4 55 55 11 222222 4 1 0 4 66 1 4 5 0 5 0 777 5 1111 4 555 3 3 555 1 3 666666666666 55 77777777777777777 99999999 2 33 444444444444444444444444444444444 3 44 77777 2 33 2 33 2 0 2 66666 2 66 5 2 2 5555 33 2 2 2 111111 3 33333333 44 44 222222222 3 2 6666 2 2 2 2 2 33 2 2 33 2 2 555 5 2 2 2 99 2 6666 2 2
lowQualScore : . . . . .. . . . . . ... . . . .... . . . . . . . .... . . . .. . . . . ... . .. . . . . .... . . . .. . .. . .... .......... . .. . . . .. . .. . . .. .. . .. . . . .. . .. .. ... . . . . . ... . . ... ....... . .. . .. . . . ... .. . . . .... ... . .... . ... . . . . .... . . .. .. . .. . . . .. . .. . .......... .. ... . . .. .. .. ...... . . . . .. . . . . . . ... . .... . ... . . ... . . ............ .. ................. ........ . .. ................................. . .. ..... . .. . .. . . . ..... . .. . . . .... .. . . . ...... . ........ .. .. ......... . . .... . . . . . .. . . .. . . ... . . . . .. . .... . .
lowQualScore : 0 5 0 0 00 5 5 7 2 8 000 0 0 2 8888 0 7 7 7 7 4 7 5555 0 0 6 66 6 6 6 6 444 6 00 6 6 6 6 5555 0 0 0 55 0 55 0 5555 5555555555 0 55 0 0 0 55 0 55 0 0 55 55 4 66 0 4 9 11 4 11 11 888 4 4 4 4 4 888 4 4 888 4444444 4 11 0 55 0 0 0 000 55 1 0 8 5555 000 0 5555 0 000 0 0 0 0 5555 0 0 55 55 0 88 0 6 0 11 0 11 0 5555555555 55 000 0 0 55 44 66 888888 4 1 1 4 11 1 4 0 2 0 0 000 0 4444 0 888 3 3 888 2 3 000000000000 99 99999999999999999 11111111 5 44 111111111111111111111111111111111 1 22 11111 9 77 7 77 7 4 4 77777 7 33 3 7 7 7777 77 7 7 9 111111 6 22222222 66 22 333333333 1 9 1111 9 9 9 9 9 99 9 9 99 9 9 000 7 9 9 9 66 9 1111 9 9
consensus : NNACAGTTCTGGGCAAGCCTCCAACGTGTTCGAGACACTGCCGCACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
Reference ( family-1787 ) : NNACAGTTCTGGGCAAGCCTCCAACGTGTTCGAGACACTGCCGCACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-GTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTATTNCTA--ATGGTACAATTTTT--TT-TTT----------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
gi|1 : ACAGTTCTGGGCAAGCCTCCAACGTGTTCGAAACACTGCCG-ACGTCTCCGTAATGCAAGACCCCTCGTTACGACCATATAACACCAAGACTAAGAATATAAGATACTT-AC-CTACACTTACAAAGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGA-GTGT-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--GCTT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G--TT-TAATCTTTCTATTACTA--ATGGTACAATTTTT--TT-TTTTTATATTTTCATTTTT---A-TGT-T--TTAC-ATG-TTTAATGTATTATAATCAA------GTACTG-TGTGTACG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TA-T--CTTATGTTTTAA-T---TT-AGC-GTATTAATTATGGTA-CTTCTTTTT-CAG--A-TTTTTC--ATTAAAAA------A----------AG--------A-A--AAAAAC-------------------C-------------C-TTATCATC--GATCTTAATAGTAAGTACTTT-TTTT--AT-T--TTGG-TGATTTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-C-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTA
gi|10 : aaTTAA-TATATT-AGT-ATAT---TTATTGTATC-TGTT-----------TTTTTC--AG-AAGAA------A----------AA--------A-A--AAAAAC-------------------CAAAAAAAAAAAAAC-TTGTCATC--GGTCTTAATAGTAA-----TGTTTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--ATTTATCT-ATTTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGTAA-TG--AAA-GG-GT--TGC-TAAT---A-AAAT-A-TGG-G--T-AT----T-ATTAATTATTA
gi|11 : ac-T--CTTATGTTTTAA-T---TT-AGCAGTAT---TTATTGTATCTTGTTTTTTCAG--G-TTTTTC--A--AAAAA------A----------AA--------A-A--AAAA---------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGATTCT-AT-----G-GTT--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAA---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-----ATTATTA
gi|12 : at--AT-T--TTGG-TGATTTTTATCATGTGTGTGACTTATT-AATA-TGTGACT--A-TTATCT-A-AAATA-----TAAA-TATTCCATTCTGCTTCTTGTATCAAGACACACATGC-ACACGTG-ATGACGCGT-AACATGATTGT-A-TG--AAA-AGTGG--TGC-T-AG---ACAAAT-A-T-G-T--T-AT----T-ATT-ATCATTAt
gi|13 : aaatcctgtcatcgtgataactctgactacgagcatctttgtaT-CTT----------ATTTTT---A-TGT-T--TT-T-ATGT-------TATTATAATCGA------GTACTG-TGT-T-CG-TGC--GTA---CCCATTA-CATTTCAAATATG--TTTGAATACTGAGTG--TTGTA-T--TTTATGTTTTAATT---TT-AGC-GT-T---TTATTGTAT-TTGTTTTT-CAG--G-TTTTTCTGA--AACAA------A----------AA--------A-A--CAAAt
gi|14 : C--A--AAAAA------AC---------AA--------A-A--AAAAAC-------------------C-------------CCTTGTCATC--GATCTCA-TAGTAA-----TG-TTT---AT-T--TTGG-TGGTT---AT-----G-GTA--TTATTTA-TA-T----CT--A-T-ATCT-A-T-AT------T-TA-TAT--------GC--ATTGTA--AA----------C-AGCTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTtataaaaaccaaactacaaaaacaaaaaaaaatctaa
gi|15 : aaaaaaaaaaaaacaaaaaacaacaa--A--AAAAAAAACCAA----------AA--------A-A--AAAAAC-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACTTTTG-A----GCAT-A-CATA-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTc
gi|16 : ataaaaGCTT-T--AC-AT-GATGAG-TGT-CCA-GTTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AACTAATAGCCCC-AAAACTGTGGAAt
gi|17 : TAATAATAA-----TG-TTTT--AT-TGTTTGGATGATTTT-AT-----G-GTA--T-ATT-A-TA-T----CT--A-TTATCT-A-TTAT------TATA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGTAA-CATA-TTGT-A-TG--AAA-AG-GGTTTGCTT-AT---ACAATT-ATT-G-G--TAAT----TAATT-ATTATT
gi|18 : ---TT-AGT-ATAT---TTATTGTATCTTGTTTTT-CAGAAG---------A--AAAAA------A----------AAAACCAAAAA-A--AAAAAA-------------------C-------------C-TTGTCATC--GGTCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------tttatt
gi|19 : tatacttatataGTTACGACCATATAACACCAAAACTAAG------AGA---TT-AC-GTACACTTAC-AAGCTTCT--AC-AT-GATGAGCTGT-CCA-GTTT-ATATCAAGGCGAC----TACTGAGACAGTATAT-CAG--CTC-TG-CCCGAAAA---TCTTAG---T--G-ACAA-AAACAATCG-
gi|2 : tACAGTTCTGGGCAA-TCTCCAACGTGTTTCAGA-ACTGCCGCACGTC--CGTA-TGCA-GACCCCTCGTTACGAC-ATATAACACCAAGACTAAGA
gi|2 : gAGGAC--AAAATATAAGATACTTTAC-GTACACTTACAAAGCTT----AC-AT-GATGAG-TG--CCA--TTT-ATATCAA-GCGAT----TAAT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-TCGG-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A----T--ATGGGGA-T--CGA-TGT-T-C--A--AATCAATAGCCCC-AAAACTGTGGAAGGCCC-TTCCAAA-C--TG-TA--AGG--AC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---AGAAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTTTCCAT---CAA--G-TT-TTTCA----GGACTAA---TTTTCA----G-TTTAAC---GA-CA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TA-TATTTCTATTTCTA--ATG-TACAATTTTT---------------------------A-TGT-T--TTAG-ATGTTTTAATGTATTATAAT-GA------GTACTG-TGTGTGCG-TGC--GTGTACCC-AT-ACCATTTC-AATATG-CTTAAAA-CCTGA-TG--TT-AT-T--CTTATGATTTA--T---TT-AGC-GTAT---TTACTGTATCTTGTTTTT-CAGAAG---------A--AAAAA------A----------AA--------ACA--AAAAAA-------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATC--A-TTAT------TATA-TAT--------GC--ATTGT---AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-A----ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTAgaactacattggttgcctgtgcagtataggacaaaatataagatactttacgtacacttacaaagcttacatgatgagtgccatttatatcaagcgattaatagaagtatataagcctgcccgaaatcttaggttcggacaaaacaatcggtcactctagttgttccaaaaagtcgaaccgttatatggggatcgatgttcaaatcaatagccccaaaactgtggaaggcccttccaaactgtaaggactgtagaacactgtgtgctttcaagagaatcactgaaaacacattttttccatcaagtttttcaggactaattttcagtttaacgacattattttgtctgtctgactgtgcgttttatatttctatttctaatgtacaatttttatgttttagatgttttaatgtattataatgagtactgtgtgtgcgtgcgtgtacccataccatttcaatatgcttaaaacctgatgttattcttatgatttatttagcgtatttactgtatcttgtttttcagaagaaaaaaaaaacaaaaaaaccttgtcatcgatcttaatagtaatgttttattttggtgattttatggtattattatatctattatcattattatatatgcattgtaagcacctttgagcgtacatgttgtatgaaaagggtgctaacaaatatggtattattattattatta
gi|20 : gacagttctgggcaatctccaacgtgtttcagaactgccgcacgtccgtatgcagacccctcgttacgacatataacaccaagactaagagaactacattggttgcctgtgcagtat---TT-AGT-ATAT---TTATTGTATCTTGTTTTT-CAG------------A--AGAAA------A----------AA--------A-A--AAAAACCAAAAAAAAAAAAAA----C-------------C-TTGTCATC--GGTCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-tta
gi|21 : atattatataTATAT-AAGAGC-C-TG-CCCG-AAAACATCTTAGGTAC--T-GC-ACAAACAACTG-AGATACCA-CTGCGTAGATC-TATT--CC-AA----AAAAGGTATTCGTTTCA-AATACCGTT-AGCT-TCCATCGA------CGA-TGT-TTCA-A--GACTAATAGGCC
gi|22 : caAC-A--C-A-TT-TTTTCCAT---CAA--GC---TTTCAT---GGACT-A---TT--------A-TTTAAT---AA-GA--TAT-TTT-GT-----TG-T-CGGGAGCTGTGTCC-G--TT-TAATCTTTCTATT
gi|23 : --ATTGTA--AAG---------C-ACCTTTGAA----GCGT-A-CATG--TGT-A-TG--AAAGAG-GA--T-C-T-GTATAACAAATAA-T-GTGTTT-AT----T-ATT-ATTATTAaatcccatgg
gi|25 : TGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG--TGT-A-TG--AAA-GG-GT--CGC-T-AT---A-AAATAA-T-G-GT-T-AT----T-ATT-ATTATTttat
gi|26 : TTTG-A----GCAT-A-CATG-TTGT-A-TGGAAAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTA
gi|3 : AATATAAGATA-TT-ACCGTACACTTACAAAGCCT-TTAACTATTGATGAG-TGTTCCA-GTTTTATATCAA-GCGAT----TACT-AGA-AGTATAT-AAGG-C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCA-AT-C-TAG--T-TGTT--CCAAA----AAAG----------TCG-AA--CCGTTAA-CTCT--AT-GGGA-T--CGATTGT-TTC--A--GATCAATAGCCCCAAAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AAG-GAC--TGATTA---GAAC-AATGT-GTGC-TTC-AA-AA---A-AAT-C---AC-------TG-AA--AAC-A--C-A--A-TTTTCCAT---CAA--GC-T-TTTCA----GGACTAAT--TTT-CA----GTTTTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-GTTTT-TAATATTTCTATTGCTA--ATGGTACAA----T--TT-TTT----------AATTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTAT-ATCGA------TTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATA---------------A-TA--GC-TA------TATGTTTTAA-T---TTAAGC-GTAT---TTATTGTATCGTG-TTTT-CAG--GTTTTTTC--G--AAAAA------A----------GG--------A-A--AAAAA
gi|3 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacga--A--AAAAA------A----------AA--------A-A--AAAAAC-------------------aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaacaaaaaacaaataaaaaaaaaaccttgtcatcgatcttaatagtaatgtttttggtgattttatggtattattatatatattatctattattatatatgctgtgtaaagcacctttgagcataatgttgtatgaaaagggtgctataaaaataggtattattattttatt
gi|3 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaaatataagatattaccgtacacttacaaagcctttaactattgatgagtgttccagttttatatcaagcgattactagaagtatataaggcctgcccgaaatcttaggtcgacaaaacaatcggtcaatctagttgttccaaaaaagtcgaaccgttaactctatgggatcgattgtttcagatcaatagccccaaaaactgtggaatgcccttccaaaacatgtaaaggactgattagaacaatgtgtgcttcaaaaaaatcactgaaaacacaattttccatcaagcttttcaggactaattttcagttttaacaagattattttgtctgtctgactgtgcgtttttaatatttctattgctaatggtacaattttttaattttatgttttatatgttttaatgtattatatcgattactgtgtgtgcgtgcgtgtaccccattaccatttcaataatagctatatgttttaatttaagcgtatttattgtatcgtgttttcaggttttttcgaaaaaaggaaaaaaaaaaaaaaaaaaaaaaC--A--AAAAACAAAT-A----------AA--------A-A--AAAAAC-------------------C---------------TTGTCATC--GATCTTAATAGTAA-----TG-TTTT---------TGG-TGATTTT-AT-----G-GTA--TTATT-A-TA-T----AT--A-TTATCT-A-TTAT------TATA-TAT--------GC--TGTGTA--AAG---------C-ACCTTTG-A----GCAT-A--ATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---AAAAAT-A---G-G--T-AT----T-ATT-ATT-TTAaacaaaaaacaaataaaaaaaaaaccttgtcatcgatcttaatagtaatgtttttggtgattttatggtattattatatatattatctattattatatatgctgtgtaaagcacctttgagcataatgttgtatgaaaagggtgctataaaaataggtattattattttatt
gi|4 : caccacgcgcaagaaactattgcgattgggttgcctgtgcagtataggacgaaatataagatattaccgtacacttacaaagcctttaactattgatgagtgttccagttttatatcaagcgattactagaagtatataaggcctgcccgaaatcttaggtcgacaaaacaatcggtcaatctagttgttccaaaaaagtcgaaccgttaactctatgggatcgattgtttcagatcaatagccccaaaaactgtggaatgcccttccaaaacatgtaaaggactgattagaacaatgtgtgcttcaaaaaaatcactgaaaacacaattttccatcaagcttttcaggactaattttcagttttaacaagattattttgtctgtctgactgtgcgtttttaatatttctattgctaatggtacaattttttaattttatgttttatatgttttaatgtattatatcgattactgtgtgtgcgtgcgtgtaccccattaccatttcaataatagctatatgttttaatttaagcgtatttattgtatcgtgttttcaggttttttcgaaaaaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaa-GATGAG-TGT-CCA-GTTG-ATATCAA-GCGAT-----ACT-AGA-AGTA-AT-AAT--C-CGTGGCCCG-GAT---ACTTAGGT-C--G-AC-A-AAACA-TCGCG----TCA-CT-C-TAGG-T-TGTT--CC-AA----AAAG----------TCG-AAA-CCGTTCA-CT-T--ATGGGGAAT--CGA-TGT-TTCCAATTAATCAATAGCCCC-AAAACTGCGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--T---T----GAACTTCTTT-GTGC-TTT-C--AG---A-AAT-C---AC-------TG-AA--AAC-ACCC-ATTT-TTTTTCAT---CAA--GC-T-TTTCA-----GACTGA---TTT-CA----G--TTAAC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATATTTCTAATT-TA--AT-GTACAATTTTT--TTATTT----------ATGTTT---ACTGT-T--TTAA-ATGT-----TGAATTAGAATCGA------GTACTG-T-T-TGCG-TGC--GGTTACCCCATTA-CATTTC--ATATGCCTTTAAA-ACTGA-TG---T-TA-T--CTTATGTTTT-A-T---TT-AGC-GTAT---TTA-TGTATCTTGTTTAT-CAG------------------AA------A----------AA--------A-A--AACAAC-------------------C-------------C-TTGTCATCTTGATCTTAATAGTAA-----TG-TTTTTCATGT--TTGG-TGA---TTAT-----G-GTT--TAATT-A-TATT----CT--A-TTATCTCA-TTAT------TATATTAT--------GC--A-TGTA--AAG---------CTACCTTTG-A----GCGT-A--ATG-TTGT-ATTG--AAA-A---G--TGC-T-AT---ACCAAT-A-T-G-GT-T-ATGTGAT-ATT--TTATTAtt
gi|5 : atg----TACT-AGA-CGTATAT-AAG--C-C-TG-CCCG-AAA---TCGTAGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-ATTT-TTTTCCAT---CAA--A-TT-TTTCA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTA--C-GTTTT-TAATCTTTCTATTACTA--ATGGTACAATTTTTAATT-TTCA---------ATTTTT---A-TGT-T--TTAT-ATGTTTTAATGTATTAAAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ACTGA-TG--TT-TATT--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATC-TGTTTTT-CAG--G-GTTTTC--A--GGAAG------A----------AA--------A-A--CAAA---------------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--AT-T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTATAATACATGTA-TAT--------GC--ATTGTA--AAG---------C-ACCTTTG-A----GCGT-A-CATG-TTGT-A-TG--AAA-AG-GG--TGC-T-AT---ACAAAT-A-T-G-G--T-AT----T-ATT-ATTATTAtt
gi|6 : -GATGAG-TGT-CCATGTTTTATGTCAA-GCGATGTGGTAC--AGA-AGTATATTAAG--C----G-CCCG-AAA---TCTTAGGT-C--GGAC-A-AAACAATCG-G----TCA-CT-C-T-G--TGTGTTTGCC-TAGAGGAAAG----------TCGGAA--CCGTT-AGCTGT--ATGGGGA-TGCCGA-TGTGTTC--A--AA-CAATAGCCC--AAAACTGTGGAATGCCCGTTCCAAAACCATG-TATAAGG-GAT--TG--TA---GAAC-ACTGT-GTTCGTTT-CA-AA---G-GAT-CTCGAC-------TG-GAGAAACGA--C-A-TTCTTTTCCAT---CAA--GCCT-TT-CA----GGACTAA---TTTTCA----G-TTTAAC---AAAGA-TTAT-TTTTGT----CTG-T-CTG--ACTGTG--CCG-TTT-TAATATTT-TATTTCTA--ATGGTACAATTTT------TTT----------ATTTTT---A-TGT-T--TTAC-ATGTTTTAATGTATTATAATCGA------GTACTGTTGTGTGCGTTGCGGGTGTA-CCCATTACCAATTC-AATATG-CTTTCAA-ACTTATTGTTTT-TA-TTCTTTATGTTTTAA-T---TT--GC-GTAT---TTATTGTATCTTGTTTTT-CAA--G---------A--AGAAA------A----------GA--------A-AACAAAAACAAAAA--------------C-------------C-TTGTCATC--GATCTTAATAGTAA-----TG--TTT--AT-T--TCGG-TGA-TTTTAT-----G-GTAT-TTATTAA-TA-T----CTTAA-TTA--T-A-TTAT------Tt
gi|7 : T----TACT-AGA-AGTATA---AG--C-C-TG-CCCG-AAA---TCTTGGGT-C--G-AC-A-AAACAATCG-G----TCA-CT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--GACCAATAGCCC---AAACTGTGGAATGCCC-TTCCAAAAC-ATG-TA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-TTT-CA-AG---A-AAT-C---AC-------TG-AA--AAC-A--C-A-TT-TTT-CCAT---CAA--GCTT-TT-CA----GGACTAA---TTT-CA----G-TTTAAT---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTT-TAATCTTTCTATTACTA--ATGGTACAG---TT--TT-TTT----------A--TTT---A-TGT-T--TTAT-ATG-TTTAATGTATTATAATCGAGTATATGTACTG-TGTGTTCG-TGC--GTGTACCCCATTACCATTTC-AATATG-CTTTGAA-ATTGA-TG--TT-TATT--CTTATGTTTTAA-T---TT-AGC-GTAT---TTATTGTATCTTGTTTTT-CAG--G-TTTAAA--A--AAAAA------ACCAAACAAACAA--------A-A--AAAAACCAAACAAACAAAAAAAAACC-------------T-TTGTCATC--GATCTTAATAGTAA-----TG-TTTT--A--T--TTGG-TGA-TTTTAT-----G-GTA--TTATT-A-TA-T----CT--A-TTATCT-A-TTAT------ta
gi|8 : atCGAT----TACT-AGA-AGTATAT-AAG--C-C-TG-CCCG-AAA---TCTTAGGT-C--G-AC-A-AAACAATCG-G----TCAACT-C-TAG--T-TGTT--CC-AA----AAAG----------TCG-AA--CCGTT-A-CT-T--ATGGGGA-T--CGA-TGT-TTC--A--AATCAATAGCCCC-AAAACTGTGGAATGCCC-TTCCAAAAC-ATGTTA--AGG-GAC--TG--TA---GAAC-ACTGT-GTGC-ATT-CA-AG---A-AAT-C---AC-------TGAAA--AAC-A--C-A-TT-TTTTCCAT---CGA--GC-T-TTTCG----GGACTAAT--TTT-CA----G-TTT-AC---AA-GA-TTAT-TTT-GT----CTG-T-CTG--ACTGTG--C-G-TTTAAAATATTTCTATTTCTA--ATGGTACAA----T--TT-TTT----------ATTTTT---A-TGT-T--TTATAATGTTTTAATGTATTATAATCGA------GTACTG-TGTGTGCG-TGC--GTGTACCCCATTACCATTTC-AAT
gi|9 : AC-ATG-TA--TGGAGATCATG--TATGGAAAC-ACTGTAGTGC-TTTACACAGCACA-CATAC---ACATTGAAGTA-AA--AAC-A--CAA-TT-TTTACCATAGGCAAAGACTTAGTTCGAATTAGACTAATCTTTT-CAGTCTG-TTTAACATAAA-GATTTATATTT-ATAGTACTGATACTGC-ACTGTGT-C-G-TTT-TAATATTTCTATTTCTATGGTGATACA--TTAT--TT-TCC----------ATGCTTGGAG-TGTATAATTAG-ATGTTCTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TTGTTGTTGTTTTTAAAAAAAAACCAAACAAACAAACAACCAAAACGCAAACAAAAACACATTTTTGTCAT