lowQualScore : 111 11111 2222222 1111 11 1 44444444444444 1 1111 222222 1111 1111111 111 111 11111111 1111111
lowQualScore : 8 777 1 5 5 55 1 11111 1 55 3 4 3 3 7777777 1 4 4 4 6 5 77 2222 66 7 5 22 0 77777777777777 3 1 1 8 2222 777777 6 1 8 3 4 1111 6 8888888 5 000 555 22222222 5 1 9999999 66 5 1 2 5 5 5 2 3 0 5 9 2 1 0 7
lowQualScore : . ... . . . .. . ..... . .. . . . . ....... . . . . . . .. .... .. . . .. . .............. . . . . .... ...... . . . . . .... . ....... . ... ... ........ . . ....... .. . . . . . . . . . . . . . . .
lowQualScore : 3 777 0 7 7 11 9 11111 3 00 6 9 6 3 5555555 4 0 4 5 0 1 99 1111 44 6 7 00 8 66666666666666 0 4 8 0 2222 222222 0 2 0 2 2 7777 7 2222222 7 000 777 99999999 7 4 8888888 99 0 4 0 0 0 0 2 4 4 7 7 7 7 9 3
consensus : NNNNTACATGTTTCATCGCCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAAC-CATTCC-AACGCAGGATACAA-CGTGC-----TTTGAACGC-AGGGTACAAC-CATTCCTTACGGCACTTTACTATGGGCA--GTGCAGAT----GTCAGCGAGGAGGGG-TTAGAAAATGCCTCATATTTTTCTCTNTGCANATA---ATTCTTCAAAAA-TA-C--ATAG-----CCTATCAGGTGACGCAATAAATT-CTGGTTCGAACGATATATA--ACA-TT-CGGT-CAGATTCC-CT---AC---CACTT---GCT-CAAACACCTC-AACACAGTT---AGAAA--ATTTC-GTGGAAATT-GG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
Reference ( gi|3 ) : GTGGTACATGTATAACCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAAC-CATTTC-AACGCAGGATACAA-CGTAA-----TTTGAACGC-AGGGTACAAC-CATTCCTTATGGCACTTTACTACGGGTA--GTGCAGAT----GTCATCGAGGAGAGG-TTAGAAAATGCCTCCTATTTTTCTATATACATATA---ATTTTTCAATAA-TA-C--ATAA-----CCTATCAGGTGGCGCAATAAATT-CTGGTTCGAATGATATATA--ACA-TT-TGGT-AAGATTCC-CT---AC---CACTT---ACT-CAAACACCTC-AACACAGTT---AGAAA--ATTTC-GTGGAAATT-GG-TA-TCGGCCGCTCGTTTTCCTCA-TTTTTATTGAAAACGGACGAATCAATCTAAAATCAAATTACATCAGTGAAAA
gi|9 : TACATGTTTCATTGC-GAGG-T-CAC--CGTC-----ATTTAGATA--CAGT-CATTCC-AACGCAGGATATAA-CGTGC-----TTTTAATGC-AGTGTA
gi|6 : atatatactactacttccaattactactgctaaatgcgctactgtactgcttagtactatactgttttattcatttcagattgcagtgtaaaaaagaacgatggcagaatcaggcaaccagaggacgaaaacattggaggagaagtacgttATGCATCTTCACCGTGG-C-CAGA-CATCTGATCATTTGGATA--CAAT-CATTGC-TACGCAGGATACAATCGTGC-----TTTTAACACAAGAATACAAC-CAACCTCTACAGCAATATACTt
gi|15 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgGTTTGATCACTGTGA-C-TAGG-CGTC-----ATTTAGATA--CAAC-CCTTCC-AACGCAGAA---AA-CGTGT-----TTTTAAtttgaaaaaaagatttttttttctttatacaaataattctcaagaaatatataatagagcctatcagctgacgcaataaatttctggtttgaatgatataaaaataggttcggacctctaccttttgccaacacttcaacatagttacaaactttttgtgcaaatttggtatccgccgttcgtttttctaattt
gi|12 : tgtgacttcCACCGTGGGCACAAA-C-TC------TTTGG-TA--CAGC-CATTCC-AACGCAGGATACAA-CGT-G-----TTTGAACGC-A-GGTACAAC-CATTCC----------TTACTATGG--C--GTGTAGAA----GTCAGTGAGGAGTGGCTTAGAAACAG--TCCTATTTT
gi|14 : CCGTG--C-CAAATCTTC-----ATT--GATA--CAAA-CATTTC--AC-----ATATAA-TGCA-------TCGA--------GTACAATACATTCCTTACGGCACTTT
gi|1 : CGTGG-C-CAAA-CATC-----ATTTGGATATACAAC-CATTCC-AACGCAGGATGCAA-TTTAACTTGCTTTGGACGC-AGGGTACAAC-TATTCCTTATGGCACTTTACTATGGGCA--GCGCAGAG----GTCAGCGACGAGGAG-TTATAAAATGTTCCATATTTTTCT-----------------CTTCAAAAAATA-C--ATAG-----CCTATCAGGTGACGCAATTAATC-CTGGTTCGAATGATATATATAACA-TT-CGGT-CAGATTCC-CTGCTAC---CACTTGTAACT-CAAACACCTC-AACACAG-------AAC--ATTTC-GTGAAAATT-GG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGA------------------AAAATCAAATTACATCAGTGAAAAtacataattggccagtgc
gi|13 : GTGG-C-CAAA-CGTC-----ATTTGG-------------------------ATACAA-CC--A-----TTCCAACGC-AGGATACA---CGTGCCTTACGGCACTTTACTATGGGCA--GTGCAGAT----GTCAGTGAGGAGGGG-TTAGAAAATGgtacatgtatataccatacatgtagctgtcagaaagcaagctttgcaattagatgattattaatgacatgacgctggatacaaccattccttgcagtataacgtaggatacaaccattcctaattaatacgatgacaaattgcattgcatgatgcatattttcttgtaacgtttttagaatttgaatattgaatttaaccccattgtttagcacgacaacaagtctcctaatccatttaagttctctatgg
gi|2 : -CGCC-----ATTTTGATA--CACA-CATTCC-AACGCAGGATACAA-AGAGC-----TTTCAACGC-AGGGTACAAC-CATTCATTATAACACTTTATTATAGACA--GGGCGAAT----GTTAGTGTGGATGGG-TAACCAATTACGTCATATTTTTCTTTATGCATATGATTATTTTTTAATGA-TATC--AT
gi|8 : GTC-----ATTTGGGTA--CAAC-CATTCC-AACGCAGGATACAA-CGTGT-----TTTGAACGC-AGGGTACAAC-CATTCCTTAGGGCACTTTACTATGGGCA--GTGCAGAT----GTCAGTGAGGAGGGA-TTAGAAAATGCCTCATATTTTTTTCTCTGTATAAA---ATTCTTTAAAAA-TA-CATATAG-----CCTATCAGGTGACGCAAAGATTT-CTGGTTCG-ACGATATATA--ACA-TTCCGGTCAGGATTCC------ACGTACACTT---GCT-CAAACACCTC-AACACAGTT---AGAAA--AATTC-ATGGAAATT-GG-TA-TCGGCCGTTCGTTTTCCtcagatttcttatcaattgcttaaatatctcaaaaaagttttgtagattgatatcggtcgtttgctttctttatttgtatagaaaatgggccaatctacctaaaatcaattacaacaataaaaagacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|19 : GGATA--CAACGTATTTTGAACGCAGGGTACAA-
gi|4 : ATA--CAAC-CATTCC-AACGCAGGATACAA-CGTGC-----TTTGAACGC-AGGGTACAAC-CATTCCTTACGGCACTTTACTATGGGCA--GTGCAAAT----GTCAGTGAGGAGGGG-TTAGAAAATGCCTCATTTTTTTCTCTCTTTAAA-A---ATTCTTCAAAAA-TA-C--ATAG-----CCTATCAGGTAACACAATAAATT-CTGGTTCGAACTATATATT--ACA-TT-CGGT-TAAATTCC-CT---AC---CACTT---GCT-CAAACACCTC-AACACAGTT---AGAAA--ATTTC-ATGGAAATT-GG-TA-TCAGCTGTTCGTTTTCCTTA-TTTTTATCGAAAACAGAGGAACCCATCTAAAATCAAATTATATCAGTGATAAtcatttct
gi|19 : GGATACAA-CGTAT-----TTTGAACGC-AGGGTACAAT-CATTTCTgacaatatcatcacaactatatacaaccattcctatgag
gi|16 : GGGTACAATGTAGATCTATGCCAGCGAGGAGGGG-TTAGAAAATGCCTCAAATTT
gi|6 : tTTTTTCTTTATACAAATA---ATTCTCAAGAAA-TA-T--ATAATAGAGCCTATCAGCTGACGCAATAAATTTCTGGTTTGAATGATATA-A--AAA-TA-GGTT-CGGAC-CT-CT---AC---CTTTT---GCC---AACACTTC-AACATAGTT---ACAAA--CTTTTTGTGCAAATTTGG-TA-TCCGCCGTTCGTTTTTCTAA-TTTat
gi|5 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgatgcatcttcaccgtggccagacatctgatcatttggatacaatcattgctacgcaggatacaatcgtgcttttaacacaagaatacaaccaacctctacagcaatatacttttgaaaaaaagattttT-TTGGTT-GAA-GATAAATA--ACAATT-CGGT-CAGTTTGCACT---ACT--CGATT---GCTTCAAACACCTCAAACAC-GTTCACAGATACTATTTC-GTGG--ATT-GGTTATTTAGACGCTCATTTT
gi|2 : aAATGATAT------CA-TT-C-----AGATTTC-TT---AT---CAATT---GCT-TAAATATCTC-AA-----------AAAA--GTTTT-GTAGA--TT-GA-TA-TCGGTCGTTTGCTTTCTTTA-TTTGTATAGAAAATGGGCCAATCTACCTAAAATC-AATTACAACAATAAAAAatgcgaaccaatttggttgcgtaagacatagtcaatacatcataataacaaaattaccattttagtgaaaggcgcggtaattattcttggacactatatattatagttgtcagaaacagacattagtgtaattgaggcgagattataaatgataattaagaatatcacgctggaatgacacaattctttgaaaatataatgaagattcagaccttcgtaattcaatgacaatatgcattggggatattttctt
gi|10 : cgccattttgatacacacattccaacgcaggatacaaagagctttcaacgcagggtacaaccattcattataacactttattatagacagggcgaatgttagtgtggatgggtaaccaattacgtcatatttttctttatgcatatgattattttttGT-AAGATTCC-CT---AC---CACTT---AT-------AC-TC-AACACAG-------AAA--ATTTC-GTGTAAATT-GG-CA-TCAGCCGCTCGTTTTCCTCATTTTTTATCGAAAACGAATGAATCCATCTAAAAT-AAATTACATGAGTGAAAAgacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|7 : tca---AGAAC--ATTTC-GTGTAGAT----------------TCGTTGTTTTCA-TTTCTATAGGAAACAGACGAACCgactttatcacaaatatataccataattgtcagaaagcaaactta
gi|11 : GTTTGTTTTCCTTT-ATTCTATCCAAAACAGATGAATCAATCTAAAATCATATTATATTAGTGAAAAcacaagaagtgaaaagacaaaatcacaaatgtataccataattgccaagaagcaaactttgcaattatgacgataatcaatgataattacaatataacgctgggtacagatacaaccacccctaacacattcctacttcattgacaatttacatcaaaatcacgtttcgtgatgctatctggcctttttagaatttgaatattgaacttcattgtttatcatgatgaaaagatatggtttcatttctttatgg
gi|18 : cactaggtcgGAAAACAGACAAGCCAACCTAATATCAAATTACATTAGTGAAAAgacaatatcttcactaatatataccataattgtcagaaagcaaactaattagcaattaagagaattgatacatg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TATTTTTCGTCCCTGTCAGATATTCACCGTATTTTAACCTATGCTTAGCACTCCA
Alignments
lowQualScore : 11111 11111 1111 111 11 22222 111 111 1111111
lowQualScore : 4 2 2 5 5 4 0 00000 44 00000 1 1 3 3 0 4 4 66 66 0000 5 333 000 1 3 11 00000 8 1 6 77 1 5 5 1 5 333 333 888 66 5 3333333 66 4 0 0 4 4 4 0 5 1 0 1 2
lowQualScore : . . . . . . . ..... .. ..... . . . . . . . .. .. .... . ... ... . . .. ..... . . . .. . . . . . ... ... ... .. . ....... .. . . . . . . . . . . . .
lowQualScore : 0 5 8 0 0 4 7 00000 66 88888 4 5 3 6 9 4 4 11 11 6666 0 888 000 0 2 00 00000 0 0 3 99 4 7 0 4 0 888 888 888 44 0 4444444 11 4 1 8 4 4 4 9 0 1 2 1 8
consensus : NNNNTACATGTNTNATCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTNTGCATATAATTCTTCAAAAATAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACG--ATATATAACA-TT-CGGTCA-GATTCC---CTAC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
Reference ( family-1783 ) : NNNNTACATGTTTCATCGCCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTNTGCANATAATTCTTCAAAAATAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACG--ATATATAACA-TT-CGGTCA-GATTCC---CTAC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
gi|1 : CGTGG-C-CAAA-CATC-----ATTTGGATATACAACCATTCCAACGCAGGATGCAATTTAACTTGCTTTGGACGC-AGGGTACAAC-TATTCCTTATGGCAC-TTTAC-TA--TGGG--CAGCGCAGAG----GTCAGCGACGAG-GAGTTATAAAATGTTCCATATTTTTCTCTT--CA-----------AAAAATAC--ATA-----GCCTATCAGGTGACGCAATTAA-TCCTGGTTCGAATGATATATATAACA-TT-CGGTCA-GATTCCCTGCTAC---CACTTGTAACT-CAAACACCTC-AACAC-------AGAAC--A-TTTCGTGAAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGA------------------AAAATCAAATTACATCAGTGAAAA
gi|1 : TGGATA--CAACCATTCCT-TGCAG--TATAA-----CGT------------AGGATACAAC-CATTCCTgtacatgtatataccatacatgtagctgtcagaaagcaagctttgcaattagatgattattaatgacatgacgctggatacaaccattccttgcagtataacgtaggatacaaccattcctaattaatacgatgacaaattgcattgcatgatgcatattttcttgtaacgtttttagaatttgaatattgaatttaaccccattgtttagcacgacaacaagtctcctaatccatttaagttctctatgg
gi|10 : cgtggccaaacatcatttggatatacaaccattccaacgcaggatgcaatttaacttgctttggacgcagggtacaactattccttatggcactttactatgggcagcgcagaggtcagcgacgaggagttataaaatgttccatatttttctcttcaaaaaatacatagcctatcaggtgacgcaattaatcctggttcgaatgatatatataacattcggtcagattccctgctaccacttgtaactcaaacacctcaacacagaacatttcgtgaaaattggtatcggccgttcgttttcctcatttttatcgaaaaatcaaattacatcagtgaaaagtacatgtatataccatacatgtagctgtcagaaagcaagctttgcaattagatgattattaatgacatgacgcT-CAGTAA-GATTCC---CTAC---CACTT----------ATAC-TC-AACACAG-------AAA--A-TTTCGTGTAAA-TTGG-CA-TCAGCCGCTCGTTTTCCTCATTTTTTATCGAAAACGAATGAATCCATCTAAAAT-AAATTACATGAGTGAAAAaattaatacgatgacaaattgcattgcatgatgcatattttcttgtaacgtttttagaatttgaatattgaatttaaccccattgtttagcacgacaacaagtctcctaatccatttaagttctctatgg
gi|11 : GTTTGTTTTCCTTT-ATTCTATCCAAAACAGATGAATCAATCTAAAATCATATTATATTAGTGAAAAgactttatcacaaatatataccataattgtcagaaagcaaactta
gi|12 : cactaggtcgCACCGTGGGCACAAA-C-TC------TTTGG-TA--CAGCCATTCCAACGCAGGATACAA-----CGTG-TTTGAACGC-A-GGTACAAC-CATTCC-----------TTAC-TA--T-GG--C-GTGTAGAA----GTCAGTGAGGAGTGGCTTAGAAACAG--TCCTATTTTgacaatatcttcactaatatataccataattgtcagaaagcaaactaattagcaattaagagaattgatacatg
gi|13 : GTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACA------CGTGC--------------------------CTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGTGAGGAG-GGGTTAGAAAATG
gi|14 : CCGTG--C-CAAATCTTC-----ATT--GATA--CAAACATTTC-AC-----ATATAA-------TGCATCGA--------GTACAATACATTCCTTACGGCACTTTTACATAATTGGC--CAGTGC
gi|15 : GTTTGATCACTGTGA-C-TAGG-CGTC-----ATTTAGATA--CAACCCTTCCAACGCAGAA---AA-----CGTGTTTTTAA
gi|16 : tgtgacttc--TGGGTACAATGTAGATCTATGCCAGCGAGGAG-GGGTTAGAAAATGCCTCAAATTT
gi|18 : GAAAACAGACAAGCCAACCTAATATCAAATTACATTAGTGAAAAat
gi|19 : GGATACAA-----CGTATTTTGAACGC-AGGGTACAAT-CATTTCT
gi|2 : -CGCC-----ATTTTGATA--CACACATTCCAACGCAGGATACAA-----AGAGCTTTCAACGC-AGGGTACAAC-CATTCATTATAACAC-TTTAT-TA--TAGA--CAGGGCGAAT----GTTAGTGTGGAT-GGGTAACCAATTACGTCATATTTTTCTTTATGCATATGATTATT
gi|2 : AATG--ATAT----CA-TT-C----A-GATTTC---TTAT---CAATTG---CT-TAAATATCTC-AA-----------AAAA--G-TTTTGTAGA---TTGA-TA-TCGGTCGTTTGCTTTCTTTA-TTTGTATAGAAAATGGGCCAATCTACCTAAAATC-AATTACAACAATAAAAAttttaatgatatcattcagatttcttatcaattgcttaaatatctcaaaaaagttttgtagattgatatcggtcgtttgctttctttatttgtatagaaaatgggccaatctacctaaaatcaattacaacaataaaaagacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|3 : cgccattttgatacacacattccaacgcaggatacaaagagctttcaacgcagggtacaaccattcattataacactttattatagacagggcgaatgttagtgtggatgggtaaccaattacgtcatatttttctttatgcatatgattattttttTACATGTATAACCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTTCAACGCAGGATACAA-----CGTAATTTGAACGC-AGGGTACAAC-CATTCCTTATGGCAC-TTTAC-TA--CGGG--TAGTGCAGAT----GTCATCGAGGAG-AGGTTAGAAAATGCCTCCTATTTTTCTATATACATATAATTTTTCAATAATAC--ATA-----ACCTATCAGGTGGCGCAATAAA-TTCTGGTTCGAATG--ATATATAACA-TT-TGGTAA-GATTCC---CTAC---CACTTA---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGCTCGTTTTCCTCA-TTTTTATTGAAAACGGACGAATCAATCTAAAATCAAATTACATCAGTGAAAAgacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|4 : gtggATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAAAT----GTCAGTGAGGAG-GGGTTAGAAAATGCCTCATTTTTTTCTCTCTTTAAA-AATTCTTCAAAAATAC--ATA-----GCCTATCAGGTAACACAATAAA-TTCTGGTTCGAACT--ATATATTACA-TT-CGGTTA-AATTCC---CTAC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCATGGAAA-TTGG-TA-TCAGCTGTTCGTTTTCCTTA-TTTTTATCGAAAACAGAGGAACCCATCTAAAATCAAATTATATCAGTGATAA
gi|5 : TTTGGTT-GAA-G--ATAAATAACAATT-CGGTCA-GTTTGCA--CTACT--CGATTG---CTTCAAACACCTCAAACAC-GTTCACAGATACTA-TTTCGTGG--A-TTGGTTATTTAGACGCTCATTTTgacaatatcatcacaactatatacaaccattcctatgag
gi|6 : aATGCATCTTCACCGTGG-C-CAGA-CATCTGATCATTTGGATA--CAATCATTGCTACGCAGGATACAAT----CGTGCTTTTAACACAAGAATACAAC-CAACCTCTACAGCAA-TATAC-Tatgcgaaccaatttggttgcgtaagacatagtcaatacatcataataacaaaattaccattttagtgaaaggcgcggtaattattcttggacactatatattatagttgtcagaaacagacattagtgtaattgaggcgagattataaatgataattaagaatatcacgctggaatgacacaattctttgaaaatataatgaagattcagaccttcgtaattcaatgacaatatgcattggggatattttctt
gi|6 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgTTTTTCTTTATACAAATAATTCTCAAGAAATAT--ATAATAGAGCCTATCAGCTGACGCAATAAATTTCTGGTTTGAATG--ATATA-AAAA-TA-GGTTCG-GA-CCT---CTAC---CTTTTG---CC---AACACTTC-AACATAGTT---ACAAA--CTTTTTGTGCAAATTTGG-TA-TCCGCCGTTCGTTTTTCTAA-TTTtttgaaaaaaagatttttttttctttatacaaataattctcaagaaatatataatagagcctatcagctgacgcaataaatttctggtttgaatgatataaaaataggttcggacctctaccttttgccaacacttcaacatagttacaaactttttgtgcaaatttggtatccgccgttcgtttttctaattt
gi|7 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgatgcatcttcaccgtggccagacatctgatcatttggatacaatcattgctacgcaggatacaatcgtgcttttaacacaagaatacaaccaacctctacagcaatatacttttgaaaaaaagatttt---AGAAC--A-TTTCGTGTAGA-TT-----------CGTT-GTTT---TCA-TTTCTATAGGAAACAGACGAACCC
gi|8 : GTC-----ATTTGGGTA--CAACCATTCCAACGCAGGATACAA-----CGTGTTTTGAACGC-AGGGTACAAC-CATTCCTTAGGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGTGAGGAG-GGATTAGAAAATGCCTCATATTTTTTTCTCTGTATAAAATTCTTTAAAAATACATATA-----GCCTATCAGGTGACGCAAAGAT-TTCTGGTTCG-ACG--ATATATAACA-TTCCGGTCAGGATTCC-----ACGTACACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-ATTCATGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCcaagaagtgaaaagacaaaatcacaaatgtataccataattgccaagaagcaaactttgcaattatgacgataatcaatgataattacaatataacgctgggtacagatacaaccacccctaacacattcctacttcattgacaatttacatcaaaatcacgtttcgtgatgctatctggcctttttagaatttgaatattgaacttcattgtttatcatgatgaaaagatatggtttcatttctttatgg
gi|9 : TACATGTTTCATTGC-GAGG-T-CAC--CGTC-----ATTTAGATA--CAGTCATTCCAACGCAGGATATAA-----CGTGCTTTTAATGC-AGTGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTTTTCGTCCCTGTCAGATATTCACCGTATTTTAACCTATGCTTAGCACTCCA
Alignments
lowQualScore : 11111 11111 1111 111 11 22222 111 11111
lowQualScore : 1 1 5 5 4 0 00000 44 00000 1 1 3 3 0 4 4 66 66 0000 5 333 000 1 3 11 00000 8 1 6 1 77 5 5 1 5 5 888 333 888 66 5 0 44444 0 66 4 0 0 4 4 4 0 5 1 0 1 2
lowQualScore : . . . . . . ..... .. ..... . . . . . . . .. .. .... . ... ... . . .. ..... . . . . .. . . . . . ... ... ... .. . . ..... . .. . . . . . . . . . . . .
lowQualScore : 0 0 0 0 4 7 00000 66 88888 4 5 3 6 9 4 4 11 11 6666 0 888 333 0 2 00 00000 0 0 3 4 99 7 0 4 0 0 888 888 888 44 0 1 00000 1 11 4 1 8 4 4 4 9 0 1 2 1 8
consensus : NNNNTACATGTNTNATCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTNTGCATATAATTCTTCAAAAATAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACGATATATA--ACA-TT-CGGTCA-GATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
Reference ( family-1783 ) : NNNNTACATGTNTNATCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTNTGCATATAATTCTTCAAAAATAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACGATATATA--ACA-TT-CGGTCA-GATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
gi|1 : CGTGG-C-CAAA-CATC-----ATTTGGATATACAACCATTCCAACGCAGGATGCAATTTAACTTGCTTTGGACGC-AGGGTACAAC-TATTCCTTATGGCAC-TTTAC-TA--TGGG--CAGCGCAGAG----GTCAGCGACGAG-GAGTTATAAAATGTTCCATATTTTTCTCTT--CA-----------AAAAATAC--ATA-----GCCTATCAGGTGACGCAATTAA-TCCTGGTTCGAATGATATATATAACA-TT-CGGTCA-GATTCC-CTGCTAC---CACTTGTAACT-CAAACACCTC-AACACAG-------AAC--A-TTTCGTGAAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGA------------------AAAATCAAATTACATCAGTGAAAA
gi|1 : TGGATA--CAACCATTCCT-TGCAG--TATAA-----CGT------------AGGATACAAC-CATTCCTgtacatgtatataccatacatgtagctgtcagaaagcaagctttgcaattagatgattattaatgacatgacgctggatacaaccattccttgcagtataacgtaggatacaaccattcctaattaatacgatgacaaattgcattgcatgatgcatattttcttgtaacgtttttagaatttgaatattgaatttaaccccattgtttagcacgacaacaagtctcctaatccatttaagttctctatgg
gi|10 : cgtggccaaacatcatttggatatacaaccattccaacgcaggatgcaatttaacttgctttggacgcagggtacaactattccttatggcactttactatgggcagcgcagaggtcagcgacgaggagttataaaatgttccatatttttctcttcaaaaaatacatagcctatcaggtgacgcaattaatcctggttcgaatgatatatataacattcggtcagattccctgctaccacttgtaactcaaacacctcaacacagaacatttcgtgaaaattggtatcggccgttcgttttcctcatttttatcgaaaaatcaaattacatcagtgaaaagtacatgtatataccatacatgtagctgtcagaaagcaagctttgcaattagatgattattaatgacatgacgcT-CAGTAA-GATTCC-CT---AC---CACTT----------ATAC-TC-AACACAG-------AAA--A-TTTCGTGTAAA-TTGG-CA-TCAGCCGCTCGTTTTCCTCATTTTTTATCGAAAACGAATGAATCCATCTAAAAT-AAATTACATGAGTGAAAAaattaatacgatgacaaattgcattgcatgatgcatattttcttgtaacgtttttagaatttgaatattgaatttaaccccattgtttagcacgacaacaagtctcctaatccatttaagttctctatgg
gi|11 : GTTTGTTTTCCTTT-ATTCTATCCAAAACAGATGAATCAATCTAAAATCATATTATATTAGTGAAAAgactttatcacaaatatataccataattgtcagaaagcaaactta
gi|12 : cactaggtcgCACCGTGGGCACAAA-C-TC------TTTGG-TA--CAGCCATTCCAACGCAGGATACAA-----CGTG-TTTGAACGC-A-GGTACAAC-CATTCC-----------TTAC-TA--T-GG--C-GTGTAGAA----GTCAGTGAGGAGTGGCTTAGAAACAG--TCCTATTTTgacaatatcttcactaatatataccataattgtcagaaagcaaactaattagcaattaagagaattgatacatg
gi|13 : GTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACA------CGTGC--------------------------CTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGTGAGGAG-GGGTTAGAAAATG
gi|14 : CCGTG--C-CAAATCTTC-----ATT--GATA--CAAACATTTC-AC-----ATATAA-------TGCATCGA--------GTACAATACATTCCTTACGGCACTTTTACATAATTGGC--CAGTGC
gi|15 : GTTTGATCACTGTGA-C-TAGG-CGTC-----ATTTAGATA--CAACCCTTCCAACGCAGAA---AA-----CGTGTTTTTAA
gi|16 : tgtgacttc--TGGGTACAATGTAGATCTATGCCAGCGAGGAG-GGGTTAGAAAATGCCTCAAATTT
gi|18 : GAAAACAGACAAGCCAACCTAATATCAAATTACATTAGTGAAAAat
gi|19 : GGATACAA-----CGTATTTTGAACGC-AGGGTACAAT-CATTTCT
gi|2 : -CGCC-----ATTTTGATA--CACACATTCCAACGCAGGATACAA-----AGAGCTTTCAACGC-AGGGTACAAC-CATTCATTATAACAC-TTTAT-TA--TAGA--CAGGGCGAAT----GTTAGTGTGGAT-GGGTAACCAATTACGTCATATTTTTCTTTATGCATATGATTATT
gi|2 : AATGATAT------CA-TT-C----A-GATTTC-TT---AT---CAATTG---CT-TAAATATCTC-AA-----------AAAA--G-TTTTGTAGA---TTGA-TA-TCGGTCGTTTGCTTTCTTTA-TTTGTATAGAAAATGGGCCAATCTACCTAAAATC-AATTACAACAATAAAAAttttaatgatatcattcagatttcttatcaattgcttaaatatctcaaaaaagttttgtagattgatatcggtcgtttgctttctttatttgtatagaaaatgggccaatctacctaaaatcaattacaacaataaaaagacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|3 : cgccattttgatacacacattccaacgcaggatacaaagagctttcaacgcagggtacaaccattcattataacactttattatagacagggcgaatgttagtgtggatgggtaaccaattacgtcatatttttctttatgcatatgattattttttTACATGTATAACCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTTCAACGCAGGATACAA-----CGTAATTTGAACGC-AGGGTACAAC-CATTCCTTATGGCAC-TTTAC-TA--CGGG--TAGTGCAGAT----GTCATCGAGGAG-AGGTTAGAAAATGCCTCCTATTTTTCTATATACATATAATTTTTCAATAATAC--ATA-----ACCTATCAGGTGGCGCAATAAA-TTCTGGTTCGAATGATATATA--ACA-TT-TGGTAA-GATTCC-CT---AC---CACTTA---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGCTCGTTTTCCTCA-TTTTTATTGAAAACGGACGAATCAATCTAAAATCAAATTACATCAGTGAAAAgacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|4 : gtggATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAAAT----GTCAGTGAGGAG-GGGTTAGAAAATGCCTCATTTTTTTCTCTCTTTAAA-AATTCTTCAAAAATAC--ATA-----GCCTATCAGGTAACACAATAAA-TTCTGGTTCGAACTATATATT--ACA-TT-CGGTTA-AATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCATGGAAA-TTGG-TA-TCAGCTGTTCGTTTTCCTTA-TTTTTATCGAAAACAGAGGAACCCATCTAAAATCAAATTATATCAGTGATAA
gi|5 : TTTGGTT-GAA-GATAAATA--ACAATT-CGGTCA-GTTTGCACT---ACT--CGATTG---CTTCAAACACCTCAAACAC-GTTCACAGATACTA-TTTCGTGG--A-TTGGTTATTTAGACGCTCATTTTgacaatatcatcacaactatatacaaccattcctatgag
gi|6 : aATGCATCTTCACCGTGG-C-CAGA-CATCTGATCATTTGGATA--CAATCATTGCTACGCAGGATACAAT----CGTGCTTTTAACACAAGAATACAAC-CAACCTCTACAGCAA-TATAC-Tatgcgaaccaatttggttgcgtaagacatagtcaatacatcataataacaaaattaccattttagtgaaaggcgcggtaattattcttggacactatatattatagttgtcagaaacagacattagtgtaattgaggcgagattataaatgataattaagaatatcacgctggaatgacacaattctttgaaaatataatgaagattcagaccttcgtaattcaatgacaatatgcattggggatattttctt
gi|6 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgTTTTTCTTTATACAAATAATTCTCAAGAAATAT--ATAATAGAGCCTATCAGCTGACGCAATAAATTTCTGGTTTGAATGATATA-A--AAA-TA-GGTTCG-GA-CCT-CT---AC---CTTTTG---CC---AACACTTC-AACATAGTT---ACAAA--CTTTTTGTGCAAATTTGG-TA-TCCGCCGTTCGTTTTTCTAA-TTTtttgaaaaaaagatttttttttctttatacaaataattctcaagaaatatataatagagcctatcagctgacgcaataaatttctggtttgaatgatataaaaataggttcggacctctaccttttgccaacacttcaacatagttacaaactttttgtgcaaatttggtatccgccgttcgtttttctaattt
gi|7 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgatgcatcttcaccgtggccagacatctgatcatttggatacaatcattgctacgcaggatacaatcgtgcttttaacacaagaatacaaccaacctctacagcaatatacttttgaaaaaaagatttt---AGAAC--A-TTTCGTGTAGA-TT-----------CGTT-GTTT---TCA-TTTCTATAGGAAACAGACGAACCC
gi|8 : GTC-----ATTTGGGTA--CAACCATTCCAACGCAGGATACAA-----CGTGTTTTGAACGC-AGGGTACAAC-CATTCCTTAGGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGTGAGGAG-GGATTAGAAAATGCCTCATATTTTTTTCTCTGTATAAAATTCTTTAAAAATACATATA-----GCCTATCAGGTGACGCAAAGAT-TTCTGGTTCG-ACGATATATA--ACA-TTCCGGTCAGGATTCC------ACGTACACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-ATTCATGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCcaagaagtgaaaagacaaaatcacaaatgtataccataattgccaagaagcaaactttgcaattatgacgataatcaatgataattacaatataacgctgggtacagatacaaccacccctaacacattcctacttcattgacaatttacatcaaaatcacgtttcgtgatgctatctggcctttttagaatttgaatattgaacttcattgtttatcatgatgaaaagatatggtttcatttctttatgg
gi|9 : TACATGTTTCATTGC-GAGG-T-CAC--CGTC-----ATTTAGATA--CAGTCATTCCAACGCAGGATATAA-----CGTGCTTTTAATGC-AGTGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTTTTCGTCCCTGTCAGATATTCACCGTATTTTAACCTATGCTTAGCACTCCA
Alignments
lowQualScore : 11111 11111 1111 111 11 22222 111 11111
lowQualScore : 1 1 5 5 4 0 00000 44 00000 1 1 3 3 0 4 4 66 66 0000 5 333 000 1 3 11 00000 8 1 6 1 77 5 5 1 5 5 888 333 888 66 5 0 44444 0 66 4 0 0 4 4 4 0 5 1 0 1 2
lowQualScore : . . . . . . ..... .. ..... . . . . . . . .. .. .... . ... ... . . .. ..... . . . . .. . . . . . ... ... ... .. . . ..... . .. . . . . . . . . . . . .
lowQualScore : 0 0 0 0 4 7 00000 66 88888 4 5 3 6 9 4 4 11 11 6666 0 888 333 0 2 00 00000 0 0 3 4 99 7 0 4 0 0 888 888 888 44 0 1 00000 1 11 4 1 8 4 4 4 9 0 1 2 1 8
consensus : NNNNTACATGTNTNATCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTNTGCATATAATTCTTCAAAAATAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACGATATATA--ACA-TT-CGGTCA-GATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
Reference ( family-1783 ) : NNNNTACATGTNTNATCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTNTGCATATAATTCTTCAAAAATAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACGATATATA--ACA-TT-CGGTCA-GATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
gi|1 : CGTGG-C-CAAA-CATC-----ATTTGGATATACAACCATTCCAACGCAGGATGCAATTTAACTTGCTTTGGACGC-AGGGTACAAC-TATTCCTTATGGCAC-TTTAC-TA--TGGG--CAGCGCAGAG----GTCAGCGACGAG-GAGTTATAAAATGTTCCATATTTTTCTCTT--CA-----------AAAAATAC--ATA-----GCCTATCAGGTGACGCAATTAA-TCCTGGTTCGAATGATATATATAACA-TT-CGGTCA-GATTCC-CTGCTAC---CACTTGTAACT-CAAACACCTC-AACACAG-------AAC--A-TTTCGTGAAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGA------------------AAAATCAAATTACATCAGTGAAAA
gi|1 : TGGATA--CAACCATTCCT-TGCAG--TATAA-----CGT------------AGGATACAAC-CATTCCTgtacatgtatataccatacatgtagctgtcagaaagcaagctttgcaattagatgattattaatgacatgacgctggatacaaccattccttgcagtataacgtaggatacaaccattcctaattaatacgatgacaaattgcattgcatgatgcatattttcttgtaacgtttttagaatttgaatattgaatttaaccccattgtttagcacgacaacaagtctcctaatccatttaagttctctatgg
gi|10 : cgtggccaaacatcatttggatatacaaccattccaacgcaggatgcaatttaacttgctttggacgcagggtacaactattccttatggcactttactatgggcagcgcagaggtcagcgacgaggagttataaaatgttccatatttttctcttcaaaaaatacatagcctatcaggtgacgcaattaatcctggttcgaatgatatatataacattcggtcagattccctgctaccacttgtaactcaaacacctcaacacagaacatttcgtgaaaattggtatcggccgttcgttttcctcatttttatcgaaaaatcaaattacatcagtgaaaagtacatgtatataccatacatgtagctgtcagaaagcaagctttgcaattagatgattattaatgacatgacgcT-CAGTAA-GATTCC-CT---AC---CACTT----------ATAC-TC-AACACAG-------AAA--A-TTTCGTGTAAA-TTGG-CA-TCAGCCGCTCGTTTTCCTCATTTTTTATCGAAAACGAATGAATCCATCTAAAAT-AAATTACATGAGTGAAAAaattaatacgatgacaaattgcattgcatgatgcatattttcttgtaacgtttttagaatttgaatattgaatttaaccccattgtttagcacgacaacaagtctcctaatccatttaagttctctatgg
gi|11 : GTTTGTTTTCCTTT-ATTCTATCCAAAACAGATGAATCAATCTAAAATCATATTATATTAGTGAAAAgactttatcacaaatatataccataattgtcagaaagcaaactta
gi|12 : cactaggtcgCACCGTGGGCACAAA-C-TC------TTTGG-TA--CAGCCATTCCAACGCAGGATACAA-----CGTG-TTTGAACGC-A-GGTACAAC-CATTCC-----------TTAC-TA--T-GG--C-GTGTAGAA----GTCAGTGAGGAGTGGCTTAGAAACAG--TCCTATTTTgacaatatcttcactaatatataccataattgtcagaaagcaaactaattagcaattaagagaattgatacatg
gi|13 : GTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACA------CGTGC--------------------------CTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGTGAGGAG-GGGTTAGAAAATG
gi|14 : CCGTG--C-CAAATCTTC-----ATT--GATA--CAAACATTTC-AC-----ATATAA-------TGCATCGA--------GTACAATACATTCCTTACGGCACTTTTACATAATTGGC--CAGTGC
gi|15 : GTTTGATCACTGTGA-C-TAGG-CGTC-----ATTTAGATA--CAACCCTTCCAACGCAGAA---AA-----CGTGTTTTTAA
gi|16 : tgtgacttc--TGGGTACAATGTAGATCTATGCCAGCGAGGAG-GGGTTAGAAAATGCCTCAAATTT
gi|18 : GAAAACAGACAAGCCAACCTAATATCAAATTACATTAGTGAAAAat
gi|19 : GGATACAA-----CGTATTTTGAACGC-AGGGTACAAT-CATTTCT
gi|2 : -CGCC-----ATTTTGATA--CACACATTCCAACGCAGGATACAA-----AGAGCTTTCAACGC-AGGGTACAAC-CATTCATTATAACAC-TTTAT-TA--TAGA--CAGGGCGAAT----GTTAGTGTGGAT-GGGTAACCAATTACGTCATATTTTTCTTTATGCATATGATTATT
gi|2 : AATGATAT------CA-TT-C----A-GATTTC-TT---AT---CAATTG---CT-TAAATATCTC-AA-----------AAAA--G-TTTTGTAGA---TTGA-TA-TCGGTCGTTTGCTTTCTTTA-TTTGTATAGAAAATGGGCCAATCTACCTAAAATC-AATTACAACAATAAAAAttttaatgatatcattcagatttcttatcaattgcttaaatatctcaaaaaagttttgtagattgatatcggtcgtttgctttctttatttgtatagaaaatgggccaatctacctaaaatcaattacaacaataaaaagacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|3 : cgccattttgatacacacattccaacgcaggatacaaagagctttcaacgcagggtacaaccattcattataacactttattatagacagggcgaatgttagtgtggatgggtaaccaattacgtcatatttttctttatgcatatgattattttttTACATGTATAACCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTTCAACGCAGGATACAA-----CGTAATTTGAACGC-AGGGTACAAC-CATTCCTTATGGCAC-TTTAC-TA--CGGG--TAGTGCAGAT----GTCATCGAGGAG-AGGTTAGAAAATGCCTCCTATTTTTCTATATACATATAATTTTTCAATAATAC--ATA-----ACCTATCAGGTGGCGCAATAAA-TTCTGGTTCGAATGATATATA--ACA-TT-TGGTAA-GATTCC-CT---AC---CACTTA---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGCTCGTTTTCCTCA-TTTTTATTGAAAACGGACGAATCAATCTAAAATCAAATTACATCAGTGAAAAgacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|4 : gtggATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAAAT----GTCAGTGAGGAG-GGGTTAGAAAATGCCTCATTTTTTTCTCTCTTTAAA-AATTCTTCAAAAATAC--ATA-----GCCTATCAGGTAACACAATAAA-TTCTGGTTCGAACTATATATT--ACA-TT-CGGTTA-AATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCATGGAAA-TTGG-TA-TCAGCTGTTCGTTTTCCTTA-TTTTTATCGAAAACAGAGGAACCCATCTAAAATCAAATTATATCAGTGATAA
gi|5 : TTTGGTT-GAA-GATAAATA--ACAATT-CGGTCA-GTTTGCACT---ACT--CGATTG---CTTCAAACACCTCAAACAC-GTTCACAGATACTA-TTTCGTGG--A-TTGGTTATTTAGACGCTCATTTTgacaatatcatcacaactatatacaaccattcctatgag
gi|6 : aATGCATCTTCACCGTGG-C-CAGA-CATCTGATCATTTGGATA--CAATCATTGCTACGCAGGATACAAT----CGTGCTTTTAACACAAGAATACAAC-CAACCTCTACAGCAA-TATAC-Tatgcgaaccaatttggttgcgtaagacatagtcaatacatcataataacaaaattaccattttagtgaaaggcgcggtaattattcttggacactatatattatagttgtcagaaacagacattagtgtaattgaggcgagattataaatgataattaagaatatcacgctggaatgacacaattctttgaaaatataatgaagattcagaccttcgtaattcaatgacaatatgcattggggatattttctt
gi|6 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgTTTTTCTTTATACAAATAATTCTCAAGAAATAT--ATAATAGAGCCTATCAGCTGACGCAATAAATTTCTGGTTTGAATGATATA-A--AAA-TA-GGTTCG-GA-CCT-CT---AC---CTTTTG---CC---AACACTTC-AACATAGTT---ACAAA--CTTTTTGTGCAAATTTGG-TA-TCCGCCGTTCGTTTTTCTAA-TTTtttgaaaaaaagatttttttttctttatacaaataattctcaagaaatatataatagagcctatcagctgacgcaataaatttctggtttgaatgatataaaaataggttcggacctctaccttttgccaacacttcaacatagttacaaactttttgtgcaaatttggtatccgccgttcgtttttctaattt
gi|7 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgatgcatcttcaccgtggccagacatctgatcatttggatacaatcattgctacgcaggatacaatcgtgcttttaacacaagaatacaaccaacctctacagcaatatacttttgaaaaaaagatttt---AGAAC--A-TTTCGTGTAGA-TT-----------CGTT-GTTT---TCA-TTTCTATAGGAAACAGACGAACCC
gi|8 : GTC-----ATTTGGGTA--CAACCATTCCAACGCAGGATACAA-----CGTGTTTTGAACGC-AGGGTACAAC-CATTCCTTAGGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGTGAGGAG-GGATTAGAAAATGCCTCATATTTTTTTCTCTGTATAAAATTCTTTAAAAATACATATA-----GCCTATCAGGTGACGCAAAGAT-TTCTGGTTCG-ACGATATATA--ACA-TTCCGGTCAGGATTCC------ACGTACACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-ATTCATGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCcaagaagtgaaaagacaaaatcacaaatgtataccataattgccaagaagcaaactttgcaattatgacgataatcaatgataattacaatataacgctgggtacagatacaaccacccctaacacattcctacttcattgacaatttacatcaaaatcacgtttcgtgatgctatctggcctttttagaatttgaatattgaacttcattgtttatcatgatgaaaagatatggtttcatttctttatgg
gi|9 : TACATGTTTCATTGC-GAGG-T-CAC--CGTC-----ATTTAGATA--CAGTCATTCCAACGCAGGATATAA-----CGTGCTTTTAATGC-AGTGTA
blockSeqs : A A G A T TGATC . T C G A A T A AT TA CTAT T ATG TAT A C AT ATAGA T C T T . A C A G A . GTA . TC A TTCAC CT T T T T T G T C
blockSeqs : A C . . . . . . C G . . . . . . . . ATA TAT T C . . . C T T . . . A . . . T . T . TT . . . . . . A T A
blockSeqs : T C . . . . . . T T . . . . . . . . CTT AAT C A . . . T C T . . . T . . . . . C . TT . . . . . . A C A
blockSeqs : . . . . . . T G . . . . . . . . ATA TAA C T . . . C T T . . . C . . . . . C . TT . . . . . . G T T
blockSeqs : . . . . . . C C . . . . . . . . CTG AA C . C . . . . C . . . . . C . TT . . . . . . G T A
blockSeqs : . . . . . . A G . . . . . . . . . . . . . C . . . . . . . . . . . . . . A C C
blockSeqs : . . . . . . C G . . . . . . . . . . . . . . . . . . . . . . . . A C C
blockSeqs : . . . . C T . . . . . . . . . . .
blockSeqs : . . . T G . .
blockSeqs : . . C T . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqCons : ** ***** ATG TAT ** *** *** TT***
originalCons : NNNNTACATGTNTNATCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTNTGCATATAATTCTTCAAAAATAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACGATATATA--ACA-TT-CGGTCA-GATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
finalCons : NNNNTACATGTNTNATCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTATGCATATAATTCTTCAAAAATAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACGATATATA--ACA-TT-CGGTCA-GATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTTTTCGTCCCTGTCAGATATTCACCGTATTTTAACCTATGCTTAGCACTCCA
Alignments
lowQualScore : 11111 11111 1111 11 22222 111 11111
lowQualScore : 1 1 5 5 4 0 00000 44 00000 1 1 3 3 0 4 4 66 66 0000 5 7 3 3 7 1 8 11 00000 8 1 6 1 77 5 5 1 5 5 888 333 888 66 5 0 44444 0 66 4 0 0 4 4 4 0 5 1 0 1 2
lowQualScore : . . . . . . ..... .. ..... . . . . . . . .. .. .... . . . . . . . .. ..... . . . . .. . . . . . ... ... ... .. . . ..... . .. . . . . . . . . . . . .
lowQualScore : 0 0 0 0 4 7 00000 66 88888 4 5 3 6 9 4 4 11 11 6666 0 2 7 7 5 0 0 00 00000 0 0 3 4 99 7 0 4 0 0 888 888 888 44 0 1 00000 1 11 4 1 8 4 4 4 9 0 1 2 1 8
consensus : NNNNTACATGTNTNATCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTATGCATATAATTCTTCAAAAA-TAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACGATATATA--ACA-TT-CGGTCA-GATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
Reference ( family-1783 ) : NNNNTACATGTNTNATCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGCGAGGAG-GGGTTAGAAAATGCCTCATATTTTTCTCTATGCATATAATTCTTCAAAAA-TAC--ATA-----GCCTATCAGGTGACGCAATAAA-TTCTGGTTCGAACGATATATA--ACA-TT-CGGTCA-GATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGAAAACGGACGAACCNATCTAAAATCAAATTACATCAGTGAAAA
gi|1 : CGTGG-C-CAAA-CATC-----ATTTGGATATACAACCATTCCAACGCAGGATGCAATTTAACTTGCTTTGGACGC-AGGGTACAAC-TATTCCTTATGGCAC-TTTAC-TA--TGGG--CAGCGCAGAG----GTCAGCGACGAG-GAGTTATAAAATGTTCCATATTTTTCTCT--------------TCAAAAAATAC--ATA-----GCCTATCAGGTGACGCAATTAA-TCCTGGTTCGAATGATATATATAACA-TT-CGGTCA-GATTCC-CTGCTAC---CACTTGTAACT-CAAACACCTC-AACACAG-------AAC--A-TTTCGTGAAAA-TTGG-TA-TCGGCCGTTCGTTTTCCTCA-TTTTTATCGA------------------AAAATCAAATTACATCAGTGAAAA
gi|1 : TGGATA--CAACCATTCCT-TGCAG--TATAA-----CGT------------AGGATACAAC-CATTCCTgtacatgtatataccatacatgtagctgtcagaaagcaagctttgcaattagatgattattaatgacatgacgctggatacaaccattccttgcagtataacgtaggatacaaccattcctaattaatacgatgacaaattgcattgcatgatgcatattttcttgtaacgtttttagaatttgaatattgaatttaaccccattgtttagcacgacaacaagtctcctaatccatttaagttctctatgg
gi|10 : cgtggccaaacatcatttggatatacaaccattccaacgcaggatgcaatttaacttgctttggacgcagggtacaactattccttatggcactttactatgggcagcgcagaggtcagcgacgaggagttataaaatgttccatatttttctcttcaaaaaatacatagcctatcaggtgacgcaattaatcctggttcgaatgatatatataacattcggtcagattccctgctaccacttgtaactcaaacacctcaacacagaacatttcgtgaaaattggtatcggccgttcgttttcctcatttttatcgaaaaatcaaattacatcagtgaaaagtacatgtatataccatacatgtagctgtcagaaagcaagctttgcaattagatgattattaatgacatgacgcT-CAGTAA-GATTCC-CT---AC---CACTT----------ATAC-TC-AACACAG-------AAA--A-TTTCGTGTAAA-TTGG-CA-TCAGCCGCTCGTTTTCCTCATTTTTTATCGAAAACGAATGAATCCATCTAAAAT-AAATTACATGAGTGAAAAaattaatacgatgacaaattgcattgcatgatgcatattttcttgtaacgtttttagaatttgaatattgaatttaaccccattgtttagcacgacaacaagtctcctaatccatttaagttctctatgg
gi|11 : GTTTGTTTTCCTTT-ATTCTATCCAAAACAGATGAATCAATCTAAAATCATATTATATTAGTGAAAAgactttatcacaaatatataccataattgtcagaaagcaaactta
gi|12 : cactaggtcgCACCGTGGGCACAAA-C-TC------TTTGG-TA--CAGCCATTCCAACGCAGGATACAA-----CGTG-TTTGAACGC-A-GGTACAAC-CATTCC-----------TTAC-TA--T-GG--C-GTGTAGAA----GTCAGTGAGGAGTGGCTTAGAAACAG--TCCTATTTTgacaatatcttcactaatatataccataattgtcagaaagcaaactaattagcaattaagagaattgatacatg
gi|13 : GTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTCCAACGCAGGATACA------CGTGC--------------------------CTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGTGAGGAG-GGGTTAGAAAATG
gi|14 : CCGTG--C-CAAATCTTC-----ATT--GATA--CAAACATTTC-AC-----ATATAA-------TGCATCGA--------GTACAATACATTCCTTACGGCACTTTTACATAATTGGC--CAGTGC
gi|15 : GTTTGATCACTGTGA-C-TAGG-CGTC-----ATTTAGATA--CAACCCTTCCAACGCAGAA---AA-----CGTGTTTTTAA
gi|16 : tgtgacttc--TGGGTACAATGTAGATCTATGCCAGCGAGGAG-GGGTTAGAAAATGCCTCAAATTT
gi|18 : GAAAACAGACAAGCCAACCTAATATCAAATTACATTAGTGAAAAat
gi|19 : GGATACAA-----CGTATTTTGAACGC-AGGGTACAAT-CATTTCT
gi|2 : -CGCC-----ATTTTGATA--CACACATTCCAACGCAGGATACAA-----AGAGCTTTCAACGC-AGGGTACAAC-CATTCATTATAACAC-TTTAT-TA--TAGA--CAGGGCGAAT----GTTAGTGTGGAT-GGGTAACCAATTACGTCATATTTTTCTTTATGCATATGATTATT
gi|2 : AATGATAT------CA-TT-C----A-GATTTC-TT---AT---CAATTG---CT-TAAATATCTC-AA-----------AAAA--G-TTTTGTAGA---TTGA-TA-TCGGTCGTTTGCTTTCTTTA-TTTGTATAGAAAATGGGCCAATCTACCTAAAATC-AATTACAACAATAAAAAttttaatgatatcattcagatttcttatcaattgcttaaatatctcaaaaaagttttgtagattgatatcggtcgtttgctttctttatttgtatagaaaatgggccaatctacctaaaatcaattacaacaataaaaagacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|3 : cgccattttgatacacacattccaacgcaggatacaaagagctttcaacgcagggtacaaccattcattataacactttattatagacagggcgaatgttagtgtggatgggtaaccaattacgtcatatttttctttatgcatatgattattttttTACATGTATAACCACCGTGG-C-CAAA-CGTC-----ATTTGGATA--CAACCATTTCAACGCAGGATACAA-----CGTAATTTGAACGC-AGGGTACAAC-CATTCCTTATGGCAC-TTTAC-TA--CGGG--TAGTGCAGAT----GTCATCGAGGAG-AGGTTAGAAAATGCCTCCTATTTTTCTATATACATATAATTTTTCAATAA-TAC--ATA-----ACCTATCAGGTGGCGCAATAAA-TTCTGGTTCGAATGATATATA--ACA-TT-TGGTAA-GATTCC-CT---AC---CACTTA---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCGTGGAAA-TTGG-TA-TCGGCCGCTCGTTTTCCTCA-TTTTTATTGAAAACGGACGAATCAATCTAAAATCAAATTACATCAGTGAAAAgacagcatcatgacaaatctatatcaacattgccatgagccaaattttgcaattaagattgcagctacttaaaactgtggatagcaccactcttcgaatttataacgtatgatacaaccattccttctattgccaaagtccatcaatgcatgttttgtgatcttattgtagtattcttatgtttataaaatttgaatatagaacttcatcgtttat
gi|4 : gtggATA--CAACCATTCCAACGCAGGATACAA-----CGTGCTTTGAACGC-AGGGTACAAC-CATTCCTTACGGCAC-TTTAC-TA--TGGG--CAGTGCAAAT----GTCAGTGAGGAG-GGGTTAGAAAATGCCTCATTTTTTTCTCTCTTTAAA-AATTCTTCAAAAA-TAC--ATA-----GCCTATCAGGTAACACAATAAA-TTCTGGTTCGAACTATATATT--ACA-TT-CGGTTA-AATTCC-CT---AC---CACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-TTTCATGGAAA-TTGG-TA-TCAGCTGTTCGTTTTCCTTA-TTTTTATCGAAAACAGAGGAACCCATCTAAAATCAAATTATATCAGTGATAA
gi|5 : TTTGGTT-GAA-GATAAATA--ACAATT-CGGTCA-GTTTGCACT---ACT--CGATTG---CTTCAAACACCTCAAACAC-GTTCACAGATACTA-TTTCGTGG--A-TTGGTTATTTAGACGCTCATTTTgacaatatcatcacaactatatacaaccattcctatgag
gi|6 : aATGCATCTTCACCGTGG-C-CAGA-CATCTGATCATTTGGATA--CAATCATTGCTACGCAGGATACAAT----CGTGCTTTTAACACAAGAATACAAC-CAACCTCTACAGCAA-TATAC-Tatgcgaaccaatttggttgcgtaagacatagtcaatacatcataataacaaaattaccattttagtgaaaggcgcggtaattattcttggacactatatattatagttgtcagaaacagacattagtgtaattgaggcgagattataaatgataattaagaatatcacgctggaatgacacaattctttgaaaatataatgaagattcagaccttcgtaattcaatgacaatatgcattggggatattttctt
gi|6 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgTTTTTCTTTATACAAATAATTCTCAAGAAA-TAT--ATAATAGAGCCTATCAGCTGACGCAATAAATTTCTGGTTTGAATGATATA-A--AAA-TA-GGTTCG-GA-CCT-CT---AC---CTTTTG---CC---AACACTTC-AACATAGTT---ACAAA--CTTTTTGTGCAAATTTGG-TA-TCCGCCGTTCGTTTTTCTAA-TTTtttgaaaaaaagatttttttttctttatacaaataattctcaagaaatatataatagagcctatcagctgacgcaataaatttctggtttgaatgatataaaaataggttcggacctctaccttttgccaacacttcaacatagttacaaactttttgtgcaaatttggtatccgccgttcgtttttctaattt
gi|7 : tgtttgtcgcgtctgttctagaactattcaagatattttatgacatcatgtgtatagtgatgcatcttcaccgtggccagacatctgatcatttggatacaatcattgctacgcaggatacaatcgtgcttttaacacaagaatacaaccaacctctacagcaatatacttttgaaaaaaagatttt---AGAAC--A-TTTCGTGTAGA-TT-----------CGTT-GTTT---TCA-TTTCTATAGGAAACAGACGAACCC
gi|8 : GTC-----ATTTGGGTA--CAACCATTCCAACGCAGGATACAA-----CGTGTTTTGAACGC-AGGGTACAAC-CATTCCTTAGGGCAC-TTTAC-TA--TGGG--CAGTGCAGAT----GTCAGTGAGGAG-GGATTAGAAAATGCCTCATATTTTTTTCTCTGTATAAAATTCTTTAAAAA-TACATATA-----GCCTATCAGGTGACGCAAAGAT-TTCTGGTTCG-ACGATATATA--ACA-TTCCGGTCAGGATTCC------ACGTACACTTG---CT-CAAACACCTC-AACACAGTT---AGAAA--A-ATTCATGGAAA-TTGG-TA-TCGGCCGTTCGTTTTCCcaagaagtgaaaagacaaaatcacaaatgtataccataattgccaagaagcaaactttgcaattatgacgataatcaatgataattacaatataacgctgggtacagatacaaccacccctaacacattcctacttcattgacaatttacatcaaaatcacgtttcgtgatgctatctggcctttttagaatttgaatattgaacttcattgtttatcatgatgaaaagatatggtttcatttctttatgg
gi|9 : TACATGTTTCATTGC-GAGG-T-CAC--CGTC-----ATTTAGATA--CAGTCATTCCAACGCAGGATATAA-----CGTGCTTTTAATGC-AGTGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TATTTTTCGTCCCTGTCAGATATTCACCGTATTTTAACCTATGCTTAGCACTCCA