lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777777777777777 2222222222 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 4 4 2 2 2 222222 2 2222 2 444 2 22 2 22222 1 88888888888888 11 11111 111 1 55555555555555555555555555555 111111 33333333333333 3333333333333333 2222 77777777777777777777777777777777777777777777777777777 111 333333333 1 1 1111 333333333 111 22222222222 111 111 1 1 11 11 222 888888 111 11111 11 111111111 7777777777777777777777777777777777777777777777777777777777 1
lowQualScore : 88 2 44444444444444444444444 2 3 3 2 1111111111 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 0 0 4 0 0 0 333333 0 5555 0 666 0 77 2 0 00000 2 4 7 22222222222222 1 6 88 22222 0 8 5 3 8 11 8 000 88888 6 1 5 5 77 0 5 6 77777777777777777777777777777 666666 0 8 33333333333333 9999999999999999 9999 99 00000000000000000000000000000000000000000000000000000 5 5 0 000 000000000 1 3 5 0 0 5 99 5 5 0000 5 5 888 444444444 5 3 2 5 999 0 888 5 66 44444444444 777 66 999 888 2 66 0 5 0 9 66 5 5 5 33 0 5 11 5 5 6 5 000 5 5 5 0 888888 000 5 66 88888 22 888888888 5 66 66 1 6666666666666666666666666666666666666666666666666666666666 5 66 0
lowQualScore : .. . ....................... . . . . .......... .................................................................................................................................................................................................................................................................................................................................................................................. . . . . . . . ...... . .... . ... . .. . . ..... . . . .............. . . .. ..... . . . . . .. . ... ..... . . . . .. . . . ............................. ...... . . .............. ................ .... .. ..................................................... . . . ... ......... . . . . . . .. . . .... . . ... ......... . . . . ... . ... . .. ........... ... .. ... ... . .. . . . . .. . . . .. . . .. . . . . ... . . . . ...... ... . .. ..... .. ......... . .. .. . .......................................................... . .. .
lowQualScore : 22 5 00000000000000000000000 0 2 0 8 8888888888 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 0 555555 0 0000 0 000 0 55 5 0 55555 5 0 3 33333333333333 0 7 33 77777 8 0 4 8 0 66 0 000 00000 7 4 7 7 99 7 7 7 33333333333333333333333333333 000000 8 0 44444444444444 0000000000000000 2222 22 11111111111111111111111111111111111111111111111111111 7 7 7 000 777777777 4 3 7 9 1 7 22 0 0 6666 0 0 888 444444444 0 2 5 0 111 4 888 0 99 22222222222 888 99 000 888 5 99 0 0 1 8 99 0 0 0 88 2 0 99 0 0 5 0 111 0 0 0 9 000000 111 0 99 00000 00 555555555 0 99 11 9 5555555555555555555555555555555555555555555555555555555555 0 99 9
consensus : CCCCCCCCCAC----T-----AGT--NAT-----CAAATGNCTTTTTTT------T---TTTT--TTTGTTTG---G--T-C---G------ACA-A--A--T-TTTG-AA-G--TTTG-----CC------CCCCCA-----C-CAC--------TT--TCTCTGT---GAT----T--TTTT--AAG------T--T-CG-CC--CC---CCCCCCACTT-----NCAAN-ATCC-GTCCTAC-GNCTCTGTTNNATGTAGAAGTACATTCAAAACTATAATG-ACANNNTATATATTCNTACACGATACGGNTGCNGTCTCTAA-GATGATATTCTCTTGGCCGAGATAGCGATAGAACTCGAGATTGCAAGG---AACGCGCTAGATGTTGGT-AGGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCCCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTNAAATACCCAGAGTTAAGTTGTGGTATTTACGATTTAATTAAATAAATCGAAATAGCGTGAGCCGGTATGTATTTTTATTTCTATTCAAANCGTGTCGAAAATTTANCAGAATGNGCGGGATACTAGTA-----A-CCG-G--CGACTA--TTTAAATAATTATGTAGT-AGGCCTTATCATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACCAATAA-T-----A-ATTN---AAAAG-------ATT--A-TGTTTTTTCA---ATGT--CGCACT---------T---T----CA------C------------AT------------TTCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTT----GCAG-CC-AA---CA---------A-CCGACACCA-TA--TTGATATT---GAAG-AAA--G--A-----A--TATC-AAA--GGATAA-T-CA---AACC--T-GTAAAAATATATA--TC-T-GGTTG-T--TGCCCG-C--A-AAAGT-ATT-TA-T-TTTTGC-T-AAAGTTTATCT-ATA------TTTGGC--TT-CA--AATC-A--ACAGA-TTCCGCN-AAA--CAA-C--CCA--ACTTTGACGCACCT-CC--ACG--ACGA--TCAT--AATA--AA------A--CA-TTACG----GTCAT--TTTCTTGT-AG--GTAGGATTAGGA
Reference ( gi|2 ) : CCCCCTTCCAC----T-----AGT--CAT-----CGAATGACCTTTTTT------T---TTTT--GTTGCTTA---G--T-C---G------ACA-A--A--T-TTTG-AA-G--TGTG-----CC------CCCCCG-----C-CAC--------TT--TCCCTGT---GAC----T--TTTT--AAG------T--T-TG-CC--CT---CCTCCCACTT-----ACAAT-ATCC-GTCCTAA-GCCTCTGCT---TGTAG-AGTA-----------ATA-TGCACATTATATATATTCTTACACGAGACG-TGGCAG-CTCTAAAGATGATATTCT-TTGACGGAGAT--AAATAAAAACTGAGATTGCAAAGGAAAAC-CGCTAAGTGTTCTTGACGAT-CTGGATTCAGTT-----------------TTCGCCT-AATATTATAC-AATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCAAT-TGT-TTTTTATTTC--TTCAAAGTGTG-CGAAAA-TTACCAGAATGAGCAGGATACTAGTA-----ATCCG-GACCAACTA--TTTAAATAATTATGTAGT-AGGCCTTATAATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACTGATAA-T-----A-ATTA---AAAAG-------ATG--A-T-TTTTTTCT---ATGT--CGCACT---------T---T------------C------------AT------------TTCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ATA-AATTTATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTT----GCAG-CC-AA---CA---------A-CCAACACCA-TA--TTGATATT---GAAG-AAA--G--A-----A--TATC-AAA--GGATAA-T-CA---AACC--T-GT-AAAATATATA--TC-T-GGTTG-T--TGCCCG-C--A-AAAGT-ATT-TA-T-TTTTGC-T-AAAGTTTATCT-ATATTTCATTTTGGC--TT-CA--AATT-A--ACAGA-TTCCACT-AAA--CAA-C--CCA--ACTTTGACGCACCT-TC--ACGCCACGAC-TCAT--AAT---AA------A--CA-TTACG----GTCCTC-TTTCTTGT-AG--GTAGAATTAGGA
gi|14 : CCCCCCTC-------------AGT--T-T-----CAAA-GACTTTTTTT------T---TTTTCTGTT--TTA---T--T-T---GCTGCTCACA-ACAA--T-TTTG-A--G--TCTC-----CC------CCCCCC-----C-CCC--------TT--TCCC-GT----AT----T--TTTT--A--------------G-TC--CC---CTTCCCTCCT-----TCAACAATCCAGTCCTAC-CGCTCTG
gi|10 : ccCCCTCCCCCAC----TGTTTTAGT--GTT-----CAAATGCCTTTTTTT------T---TTTT--GCTTTTTGCACG--T-C---T------AAA-AT-A--T-TTTG-AG-C--TTTGTTGCTCC------CCCCCACGCTCC-CAC--------TT--T--CTGTAAGGAT----TAATTGA--AAG------TA-T-TG-CC--C----ACACCCACTTTCGAAAAAAT-ATAC-AGCCTAC-GACTCTGTTTAATGTAGAAGTA-----------
gi|1 : CCCCCCCCAC----T-----ATTTCCATGTATTCGAATTACTTTTTTTAATTTAT---TTAT--TTTGCT-----G--T-T---G------GCA-A--AACT-TTTG-ATTG--TTTGGCACCCC------CCCCCA-----CGCACCGCCCCCCTT--TTTCTGT---GAC----T--TTTT--AAAAATT--T--T-CG-CC--CC---CCCCCCTTTTC----ATAAT--TCG-TTCCTAC-GC-TCTGTTGC-TGTA--AGTACATTCAAAACTATAATG-ACAAGTTATATATTCATACAC-ATACGGTTGCAGTCTCTA--GATGATATTCTCTTGGCCG-GAT--CGATAG----------TGCAAGG---AACGCGCTAGATGTTGGT-AGGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCCCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTAAAATACCCAGAGTTAAGTTGTGGTATTTACGA-TT-ATT-AATAAATCG-AATAGT-TGAGCCAGTATGTATTTTTATTTCTATTCAAATCGTG-CG--AA-TTACCAGAATGAGC-GGATACTAGTA-----A-CCG-GA-CGACTACTTTTAATTA--TATGT-GT-AGGCCTTATAA-TCTTAT-CAT-A-AATG-A-CGATAAC-GAAC-AATTATT-GATT--ACGCAAGTCCCTCTGCCTTC-GAGATTTGA------TTAA------------AT-----ATCAG--GCT-ATAACT-----A-AATT---AAAAG-------ATT--A-T-TTTTTTCA---ATGTTCCGCACT---------T---CCTCACAGGCACAC------------AT------------TTCGTTTTC-C---GAGGATAA-----TATAGC---------GCAATACAATTCATACTGG-AAACTGCC-GATTT--CCGATTTCACAC-TTTTCC-AAATTC-ATATTGTTT----G-AG-C---A---CA---------A-CCAACACCA-TA--TTGATATT---GAAG-AAA--G--A-----A--TATC--AA--GGATAACT-CA---AA-C--T-GTAAAAATAT-TA--TC-TGGGTTG-T--TGCCCGCC--A-AAAGT-A-T-TA-T-TTTTGC-T-AAAG-TTATCG-A-A----ATTTTGGCGTTT-CA--AATC-A--ACAGG-ATTCGCG-AAA--CAA-C--CC---ACTTTGGAGCACCT-CC--ACG--ACG---TCAT--AATA--AA------A--CA-TTAC-----GTCATT-TTCTTTGTGAG--GTAtttaaaaacaacatcaacgatggca
gi|13 : CCCCCCCCACACATT-----AGT--GAA-----CAAATGCCTCTTTTT------TTTTTTTT--TTTGTTTG---GCTT-CACAA------ATA-A--A--T-TTTG-AA-G--T-TC-----CC------CACCCA-----C---C--------TT--T--CTGT---AATATTAT--TTTA--AAG------T--CGTGACC--CTACCCCCCCCACTT-----TCAAA-ATCtgaggattggattaccgtcctttatgtgtatatgatgaactagtaattcagccttatgataagttgacaaaaataaaaaaatcccggcgggtaaatacccaataacgtcccttgtt
gi|11 : CCTTTTTT------T---CTTT--TTTTTTTG---G--CGC---GTTGTGCACAGA--A--TGTTTGAAA-G--TTTG-----GC------CCCCCC-----C-CAC--------CTCACCTCTGT---GA-----T--TTTT--AAGAAGTTAT--C-CG-CCCACT---CC-CCTACTT------CAAA-ATCA-ATCTTAGCGCCTCTGag
gi|16 : cccctccctacctcagtgtactttctttcatTTTTTT------T---TTTT--TTTGC-TA---G--T-C----------ACATAGCA--T-TTTG-AA-GTCTATG-----CCATGCCACCCCCACCCC-C-CAC--------TT--T--CTGT---GAT----T--TTTTGAAAG------TGCT-GG-CC--CC---CCagatgagtttac
gi|22 : acttttttttttTTATA-ATATTCTTACACGA-ACG-GTACTG-CTCTAA-GATGATATTTT-TTGAC-GAGATAGAAATAAAACTCGAGATTaattctcaaaatca
gi|3 : CTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTAC-ATTTAATTAAATAAATCGAA--AGCGTGAGCCG---TGT-TTTTTATTTC--TTCAAAGTGTGTCGAAAATTTAACAGAATGTGCGGGATGCTAGTA-----AAC-----CCAA--A--CCTAA-----TATGTAGT-AGGCCTTATAATTTTTATGCATAAGAATGAA-CGAT-ACAAAACGAATGA-T-TA-T--ACGCAAGT-CCTCT--CTGT-GAGATTTGATACGTGT--A------------GC-----ATACGGAGCCAAT-A-T-----AGATTT---AAAAG-------ATT--AGTGTTTTTTCA---ATGT--CGCACT---------T---TGCATAACAGCAGC------------AT------------TTCG-TTTC-CAGG--AGATGA---AATATAATTA-------GCAACA-AATTCATACTAGAAAACTGAA-CATTT--CCGTATTCACACTTTTTCCAAAATTC-ATATTGTTT----GCAG-CC-AA---CA---------ACCCAACACCA-TA---TGATATT---GAAG-AAAAGG--A-----AG-TATC-AAAAGGGATAA---CA---AACC--TCGTAAAAATATATAATTCTT-GGTTG-T--TG-CCG-CCAA-AAAGTAAAT-TA---TTTTGC-T-AAAGTTTA-CT-ATA------TTTGGC---T-CA--AATCAA--ACAGATTTCCGCGAAAA--AAA-C--CCATCACTTTGACGCACCT-------GCCACGAC-TCAT--AATA--AA------A--CA-TTACG--------TCATTTCTTGT-AG--GTAGGATTAG
gi|17 : CGGGATACTAGTACTGTAACCCGTG--CGACTA--TTTAAATAATTATGTAGTTA---TTTATCATTTTTAT-CA-AA-AATG-A-CGAT-AA-GAAC-AATGA-T-GA-T--ACGCAAGTCACTCTG-Catacgtcctatatgtgtatatgaaataataattcacttactatgaaagttaaaataaaaaatctcggcggtaaatgagccacaataacgtcccttgttcc
gi|5 : TTAAATAATTATGTAGT-AGGCCTCATCACTTTTAT-CATAA-AATG-ACCTAT-AC--AAC-AATGATT-GA-TAAACGCAAGTCCTTCTG-CTGT-GAGATTTGA------T--AC-----------ATTTAGCATACG--ACCAATAA-T-----A-ATT----AAAAG-------ATT--A-TGTTTTTTCA---TTGT--CGCACT---------TGCATCACACTAA----C------------AT------------TTTG--TTC-TAGGGAGGATAA---ATTATAAC---------GC-ACA-AA-TCATACTGGAAAACTGCC-GATGT--CCGTATTCA-AC--TTTCCAAAATTC-ATAGTGTTT----TCA--CC-AA---CA---------A-CCAACAC---TA--TTGATATT---GAAG-AAA--G--A-----A--TATA-CAA--GGATAA-T-CA---AA-C--T-GT-AAA--ATATA--TC-T-GGTTGCT--TACCCG-C--A-AAAGT-ATT-TA---TTTTGC-T-AAAGTTTATCT-ATATTTC------GC-----GA--AA--------------CCA---------AA-C--CCA--AC-TTGACGCACCT-CC--ACA----GACGTCAT--GATAAAAA------A--CA--TAC-----GTCAT--TTTCTTGT-AG--G-AGGATAAG
gi|6 : TATTTGTATACT-AGGCCTTACCATGTTTAT-CATAA-AATG-G-TGAT-TC-GAAC-AATGA-T-AA-T--ACGCAAGCCCCTCAG-CTGT-GAAATTTGA------T--A------------AT-----ATGTG--ATCGATAA-TTACAAATATTATGTGAAATCTTACCCATGGTA-T-GTTTTTCTTTAATGT--TGCACT---------T---TGTATCACCACAAC------------AA------------TTCG-TTTC-CAGGGAGAATAA---ATTATAAC---------GC-ACA-AATTCACACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTT----GGAG-CC-AA---CA---------A-CCCACACCG-TA--ATGATATT---GAAG---A--G--C-----ATTTTTT-AAA--GGATAA-T-CA---AACC--T-GT-AAACTATAAA--TA-T-GGTTA-C--TGTGCG-C--A-AAAGT-GTT-TA-C-TTTTGC-T-AAAGTTTATCT-ATA------TTTGGC--TT-CA--AATT-A--ACAG--TT------------AA-C--CAA--ACTTTGACGCACCT-CT--ACG--ACG---TCAT--AATA--AA------A--TA-TTACG----attacgtcctatatgtagtatatgaaataaagtatttacagctttacttattggaagttgaaaaaaattaaaaaaaaattcggcggtaaataacctataacgtcccttgttct
gi|4 : tgtagtT-AA-GAAC-AATGA-TTGA-T--ACGCAAGTC--TCTG-CTGTTGAGATTTGA------T--ATATCGTAATGCCAT-----ATACG--ACAAATAA-T-----G-ATTA---AAAAG-------ATT--A-TGTTTTTTCCG--ATGT--CACACTGTTCTGCCAT---T------------C------------ACACGCACTATTTGTTCG-TTCCTCAGGCGGCATGCGGCATT-TAGTAAAGGACTGGC-ACA-AATC-ATACTGGACAGCTGCCCGATTTAGCGGTATTCACAC-TTTTCCAAAATTCTATATTGGTTGATGGCAG-CCAAA---CA---------A--CAACACCAGTAG-TTGA-ATT---G-AG-AAA--G--------A--TATCAAAA--GGATAA-T-CA---AACC--TGGTAAAAATATTTA--TT-C-TGTTG-T--TGCCCG-C--AGAAAGT-ATG-TA-TGTTTTGC-T-AAAGTTTATCTGATATTT-------GC--TT-CAATAATC-A--ACAGA-TTCCGCG-AAA--CAA-CGTCCA--AC-TTGACGCACCTCTC--ACG--ACG---TCATAGAATA--AA------A--CATTTACT----GTCAT--TTTCTTGT-AGGTGTAG-ATTAGtaatattacgtcctatatgtgta
gi|25 : TGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGACTTGA------T--A------------AC-----ATattacgtgctatgatgtgtatatgaaatagtaatgtcagcttactatgcaagttggaaaaattaaaaaagaaatctcggcggtaaatagccaataacggtccttgttct
gi|7 : -TTTCTTCA---ATGT--CGCACT---------T---T------------TCATCACAGTAATAT------------TTCG-TTTC-CAGGGAGGATAA---ATTAAAAC---------GC-AAA-AATTCCTACTGGAAAACAGCC-GATTT--CCGCACTCACAC-TTTTCAAAATTTC-ATATTGTTT----GCAG-CC-AA---CA---------A-CCAACATCA-TA--TTGATATT---GAAGAAAA--A--A-----A--TATT-AAA--GGATAACC-CA---AACC--T-GT-AAAATATAAA--TC-T-GGTTG-T--TGTGCG-C--A-AAAGT-G-T-TA-T-CTTTGC-T-AAAGTTAATCT-ATA----A--TTGGG--TT-CA--AACC-A--ACAGA-TTCGGCT-AAA--CAA-C--CCA--ACTTTGACGCACCT-TA--AATTCACGACGTCAT--AATA--AA------A--CA-TTAC-----GTCAT--TTTCTTGT-AA--GTAGGATTAGGA
gi|26 : ------------C------------AT------------ATCG-TTTC-CAGGGAGGAttacgtcctatatgtacaaatgaaataagtaattcagcttacaatgaaagttgaaaaaatgaaaaaaaaaatattggcggctaatagccaataacgtcccttgttct
gi|24 : tcatcacagcaaGATAA---ATTATAGC---------GC-ATA-AATTCATGCTGGGAAACTGCC-GAT
gi|8 : CAC-TTTTCCAAAATTC-ATATTGTTT----GCAGACC-AACTTCACTCATT---A-CCGAC-CAA-TATCTTGATTTTTTGAAAG-AAA--GTAG-----A--TAT---AT--AGATAA-TCCA---AACC--T-TT-AAAATATTTA--TC-T-GGTTG-TTATGCCGG-CA-A-AAAGT-ATTGTATT-TTTTGCTT-AAAGTTTATCT-ACA------TTTGGC--TTCCA--AATC-AACACAGA-TTCCGCT-AAAACCAACC--CCA--ACTTTGACGCACCT-TCGTACGTCATAA--------AAT---GA------AACCATTTACG--------TCATTTCTTGT-AG--GTGGGATTAGGA
gi|9 : -TTTCTCAAAGTTC--TATTGTTT----GCAG-CC-AA---CATCACTCATTA-CCGAC-CAA-TATCTTGAT-TT---AATG-AAA--G--AAATAGA--TAT--AAT--AGATAATT-CATTCAACCTGT-GT-AAAATAT-TA--TC-T-GAGTG-TTATGCCGG-C--A-AAAGT-ATT-TATT-TTTTGC-TAAAAGTTTATCT-ACA------TTTGGC--TT-CA--AATC-AACACAGACTTCCGCT-AAAC-CAA-C--CCA--ACTTTGACGCACCT-TC--G----ACG---TCAT--AAA---AATGAAACA--CA-TTACATTACGTCAT--TTTCTAGT-AG--GTGGGATTAGGAttacgtcctattatgtataaatgaaacaagtaattccagcttactattgaaagtttgaaaaaattgaaaaaatattccggcggtaatagccaataacgtcctgtgtt
gi|12 : A--ACTTTGACACACCT-CC--ACG--ACG---TCAT--AAT---AA------A-------ACA----------------TGT-AG--GTAGGATTAGGAttacgtcctatatgtataaatgaaacaagtaattcagcttactatgaaagttgaaaaaatgaaaaaaatctcggcggtaaatagccaataacgtcccttgttc
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATTACGTCCATTTTCTTGTAGTAGATTGGGATTACGTCCTATATGTGTATATGAAATAAGTAATCAGCTTACTATGAAAGTTGAAAAAATATAAAATCTGGCGGTAAATAGCCATAACGTCTTGTT
Unaligned ( gi|18 ): TACGTCCTATATGTATAAATGAAACAAGTAGGCCTAATTCAGCTTATTATGAAAGTTGAAAAAATGAAAAAAATCTTGGCGGTAA
Unaligned ( gi|19 ): CCCCCCTCCCCACTTTCAGTGTACAAAGACCCCTTTTTTTTGTTTTTTTTTGTTTTTTTTTTGCTTGTTCACAAAATTTTGA
Unaligned ( gi|20 ): AGTAATTCAGCTTACTATGAAAGTTGAAGAAATAAAAAAAATCTCGGCGGTAAATAGCCAATAACGTCCCTTGTTCTT
Unaligned ( gi|21 ): TAATTCAGCTTACTATGAAAGTTGAAAAAATGAAGGAAAAATATCGTCTGTAAATAGCCAATAACGTCCCTTGTTCT
Unaligned ( gi|23 ): TGTGTAAATGAAACAAGTAATTCAGCTTACTGTTGAAAAAATGGAAAAAAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 555555555555555555 11 111 11111 1 666666666666666666666666666 4444444444444 11111 22222222222222 111 11 3333333333333333333333333333 11111111 333 111 222222222222 1 2 1 1 22 2 1 2 1 2222 222222 333 1 2 1 66666666666666666 1 1 2 2 2 111 2 2222 2 33 2 555555555555555 11 1 1 5555555555555555555 11111111111111 22222222 2222222222222222222222222222222222222222222222222222 222222222 22222222222222222 1111 22222 11 111 11 11 111111 11 11111 11111 33 111 22222
lowQualScore : 444444444444444444 22 0 1 000 77 00000 0 666666666666666666666666666 77 5 6666 4444444444444 5 5 44444 5 77777777777777 888 0 000 5 55 1111111111111111111111111111 5 1 66666666 66 8888 8 8 555 333 444444444444 5 0 333 3 1 6 5 11 1 3 7 3 3 0 5 7 9999 111111 555 5 55 0 2 5 00000000000000000 2 5 5 1 3 3 3 6 333 7 7 7 7 3 7777 3 00 11 3 7 7 1 1 6 888888888888888 2 33 6 7 6 2 1 6 6 3 5 5 5 0 5 5 66 1 5 5 77 4444444444444444444 99 4 6 99999999999999 7 44444444 6 6 77 5 77 7777777777777777777777777777777777777777777777777777 5 5 888 666666666 5 5 5 5 77 4 4 9999 4 4 99999999999999999 4 3 1 1 4 6666 777 4 66 66 11111 99 00 111 4 777 1 4 4 33 1 7 66 4 4 4 22 4 66 4 4 4 4 4 88 8 4 4 4 777777 66 4 66 4 22 99 0 77 22222 4 66 55 0 00000 444 4 55 66 888 55 55 4 7 66666 77 4 4 777 4
lowQualScore : .................. .. . . ... .. ..... . ........................... .. . .... ............. . . ..... . .............. ... . ... . .. ............................ . . ........ .. .... . . ... ... ............ . . ... . . . . .. . . . . . . . . .... ...... ... . .. . . . ................. . . . . . . . . ... . . . . . .... . .. .. . . . . . . ............... . .. . . . . . . . . . . . . . . .. . . . .. ................... .. . . .............. . ........ . . .. . .. .................................................... . . ... ......... . . . . .. . . .... . . ................. . . . . . .... ... . .. .. ..... .. .. ... . ... . . . .. . . .. . . . .. . .. . . . . . .. . . . . ...... .. . .. . .. .. . .. ..... . .. .. . ..... ... . .. .. ... .. .. . . ..... .. . . ... .
lowQualScore : 888888888888888888 22 8 0 000 99 44444 1 000000000000000000000000000 99 7 3333 3333333333333 7 7 33333 7 99999999999999 000 1 000 7 77 6666666666666666666666666666 7 7 66666666 77 2222 0 8 000 000 555555555555 5 0 000 3 0 7 3 33 0 7 3 3 3 7 0 3 7777 333333 000 0 00 0 5 5 55555555555555555 5 5 0 0 3 7 7 7 777 3 3 3 3 3 0000 7 77 77 7 3 3 0 0 5 555555555555555 5 88 0 5 7 5 7 7 7 3 7 7 7 0 0 0 99 4 0 7 99 1111111111111111111 22 2 7 88888888888888 5 22222222 7 7 99 7 99 9999999999999999999999999999999999999999999999999999 0 0 888 999999999 0 0 0 0 99 4 4 4444 4 4 33333333333333333 4 4 9 1 4 0000 888 4 11 11 77777 22 66 444 4 888 1 4 4 44 8 7 11 4 4 4 22 4 11 4 4 4 8 4 00 9 4 4 4 222222 11 4 11 4 22 77 1 00 22222 4 11 55 8 00000 444 0 55 66 000 55 55 0 3 55555 22 0 0 000 0
consensus : CCCCCCCCCAC----T-----A-------GTNNTCGAATGACTTTTTT---T--TTT---T-TTTTNTTTGCT-G--T-C---G------ACA--A--A--T-TTTG-AA-GTTT-------G-----CC-CC-CCCA-----C-C----AC--------TT--TCTCTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TC-----AA-AATCC-GT-CCTA-CGNCTCTGTT---TGTAGAAGTA-ATTCAAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGG-TGCAG-CTCTAA-GATGATATTCT-TTGAC-GAGATAG-GATAAAA-CCGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATACC-AGAGT-AAGTTGTGGT-TTTACGATTTAATTAAATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTCT--TCAAAGCGTG-CGAAAATTTACCAGAATGAGCGGGATACTAGTA-----A-CC-G-GA-CGACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATGA-CGAT-ACGAA-C-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGAT--A------------AT-----ATACGA--CCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-CAT-A----C------A-CA------T----------TTCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-A-CA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACACTTTT-CCAAAATTC-ATATTGTTTG----CAG-CCAA-C-------A---------A-CCAACACCA-TA-T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-C-A---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-TT--GCCCG-C--A-AAA-GT-ATT-TAT-TTTT-GCT-AAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA--A-CA-TTAC-----GTCAT-TTTC-TTGT-AGGT---A-GGATTAGGA
Reference ( family-1761 ) : CCCCCCCCCAC----T-----A-------GTNATCAAATGNCTTTTTT---T--TTT---T-TTTTGTTTG---G--T-C---G------ACA--A--A--T-TTTG-AA-GTTT-------G-----CC-CC-CCCA-----C-C----AC--------TT--TCTCTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-NC-----AA-NATCC-GT-CCTA-CGNCTCTGTTNNATGTAGAAGTACATTCAAAACTATAATG-ACANNNTATA-TATTCNTACACGATACGGNTGCNGTCTCTAA-GATGATATTCTCTTGGCCGAGATAGCGATAGAACTCGAGATTGCAAGG---AACGCGCTAGATGTTGGT-AGGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCCCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTNAAATACCCAGAGTTAAGTTGTGGTATTTACGATTTAATTAAATAAATCGAAATAGCGTGAGCCGGTATGTATTTTTATTTCTATTCAAANCGTGTCGAAAATTTANCAGAATGNGCGGGATACTAGTA-----A-CC-G-G--CGACTA--TTTAAATAATTATGTAGT-AGGCCTTATCATTTTTAT-CATAA-AATGA-CGAT-ACGAA-C-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGAT--A------------AT-----ATACGA--CCAATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T----------C------A-CA------T----------TTCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-A-CA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACACTTTT-CCAAAATTC-ATATTGTTTG----CAG-CCAA-C-------A---------A-CCGACACCA-TA-T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-C-A---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-TT--GCCCG-C--A-AAA-GT-ATT-TAT-TTTT-GCT-AAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACGA-TCAT---AAT--AAA--A-CA-TTACG----GTCAT-TTTC-TTGT-AGGT---A-GGATTAGGA
gi|1 : CCCCCCCCAC----T-----ATTTCCATGTATTCGAATTACTTTTTT---TAATTT---A-TTTATTTTGCT-G--T-T---G------GCA--A--AACT-TTTG-ATTGTTT-------GGCACCCC-CC-CCCA-----CGC----ACCGCCCCCCTT--TTTCTGT---GAC-T--TTT--T--AAAAATTT-T---CG---CC---C-CCCCCCC-TTT-TC-----AT-AATTC-GTTCCTA-CG-CTCTGTTGC-TGTA--AGTACATTCAAAACTATAATG-ACAAGTTATA-TATTCATACAC-ATACGGTTGCAGTCTCT-A-GATGATATTCTCTTGGCCG-GAT--CGATAG----------TGCAAGG---AACGCGCTAGATGTTGGT-AGGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCCCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTAAAATACCCAGAGTTAAGTTGTGGTATTTACGATT--ATT-AATAAATCG-AATAGT-TGAGCCAGTATGTATTTTTATTTCTATTCAAATCGTG-CGAA---TTACCAGAATGAGC-GGATACTAGTA-----A-CC-G-GA-CGACTACTTTTAATTA--TATGT-GT-AGGCCTTATAA-TCTTAT-CAT-A-AATGA-CGATAACGAA-C-AATTATT-GATT--ACGCAAGTCCCTCTGCCTTC-GAGATTTGATTAA------------AT-----ATCAGG--CT-ATAACT----A-AA------TTAAA--------AGATTA-T-TTTTT--TC-AATGTTCCGCACT---------T---CCTCACAGGCAC------A-CA------T----------TTCGTTTTC-C---GAGGATAA-----TATAGC---------GCAA-TACAATTCATACTGG-AAACTGCC-GATTT--CCGATTTCACACTTTT-CC-AAATTC-ATATTGTTTG-----AG-C--A-C-------A---------A-CCAACACCA-TA-T--TGATATT---GAAG-AAA--G--AA-----TATC-AA--GGATAACT-C-A---AA-CT-G-TA-AAAATAT-TA--TC-TGGGTTG-TT--GCCCGCC--A-AAA-GT-A-T-TAT-TTTT-GCT-AAA-G-TTATCG-AAAT-----TTTGGCGTTT-CAA--ATC-A--ACAGG-ATTCGC-GAAA--C--AA-C--CC---ACTTTGGAGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA--A-CA-TTAC-----GTCAT-TTTCTTTGTGAGGTATGA-GGATTGG
gi|10 : CCCTCCCCCAC----TGTTTTA-------GTGTTCAAATGCCTTTTTT---T--TTT---T-TGCTTTTTGCACG--T-C---T------AAA--AT-A--T-TTTG-AG-CTTT-------GTTGCTCC-CC-CCCACGCTCC-C----AC--------TT----TCTGTAAGGAT-TAATTG--A--AAG----TAT---TG----C---C-CACACCCACTT-TCGAAAAAA-TATAC-AG-CCTA-CGACTCTGTTTAATGTAGAAGT--ATTTAAAAattaccgtcctttatgtgtatatgatgaactagtaattcagccttatgataagttgacaaaaataaaaaaatcccggcgggtaaatacccaataacgtcccttgtt
gi|11 : CTTTTTT---T--CTT---T-TTTT-TTTG---G--CGC---GTTGTGCACAG-A--A--TGTTTGAAA-GTTT-------G-----GC-CC-CCCC-----C-C----AC--------CTCACCTCTGT---GAT-T--TTTAAG--AAG----T-TATCCG---CC---CACTCCCCTACTT--C-----AA-AATCA-AT-CTTAGCGCCTCTGacaacatcaacgatggca
gi|12 : cccctccctacctcagtgtactttctttcatcA--ACTTTGACACACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA--A-CA----------------------TGT-AGGT---A-GGATTAGGAagatgagtttac
gi|13 : CCCCCCCCACACATT-----A-------GTGAACAAATGCCTCTTTT---T--TTTTTTT-TTTTGTTTG---GCTT-CACAA------ATA--A--A--T-TTTG-AA-GTT--------------CC-CCACCCA-----C-C------------------TTTCTGT---AATATTATTT--T--AAA----G-T---CGTGACCCTAC-CCCCCCCACTT-TC-----AA-AATCttacgtcctatatgtgtatatgaaataagtaattcagcttactatgaaagttgaaaaaataaaaataaaaatctcggcggtaaatagccaataacgtcccttgttc
gi|14 : CCCCCCCCTC----------A-------GTT-TCAAA-GACTTTTTTTTTT--TTC---TGTTTTATTTGCT-G--C-T---C------ACAACA--A--T-TTTG--A-GTCT-------C-----CC-CC-CCCC-----C-C----CC--------TT--TC-CCGT----AT-T--TTT--T--A-------------G---TC---C-CCTTCCCTCCT-TC-----AACAATCCAGT-CCTA-CCGCTCTGag
gi|15 : A-TTACG----TCCAT-TTTC-TTGT-A-GT---A--GATTGGGA
gi|16 : TTTTTT---T--TTT---T-TTTTTTTTGCTAG--T-C----------ACAT-AGCA--T-TTTG-AA-GTCTATGCCATG-----CCACC-CCCA-----C-CCCCCAC--------TT--TCT--GT---GAT-T--TTT--TGAAAG----T------G---CT---G-GCCCCCCAATTCTC-----AA-AATCttacgtcctatatgtgtatatgaaataagtaatcagcttactatgaaagttgaaaaaatataaaatctggcggtaaatagccataacgtcttgtt
gi|17 : actttttCGGGATACTAGTACTGTAA-CCCGTG--CGACTA--TTTAAATAATTATGTAGTTA---TTTATCATTTTTAT-CA-AA-AATGA-CGAT-AAGAA-C-AATGA-T-GA-T--ACGCAAGTCACTCTG-Ca
gi|2 : CCCCCTTCCAC----T-----A-------GTCATCGAATGACCTTTTT---T--TTT---T-TGTTGCTTA---G--T-C---G------ACA--A--A--T-TTTG-AA-GTGT-------G-----CC-CC-CCCG-----C-C----AC--------TT--TCCCTGT---GAC-T--TTT--T--AAG----T-T---TG---CC---C-TCCTCCCACTT-AC-----AA-TATCC-GT-CCTA-AGCCTCTGCT---TGTAGA-GTA-----------ATA-TGCACATTATATA-TATTCTTACACGAGACGTG-GCAG-CTCTAAAGATGATATTCT-TTGACGGAGATAA--ATAAAAACTGAGATTGCAAAGGAAAAC-CGCTAAGTGTTCTTGACGAT-CTGGATTCAGTT-----------------TTCGCCT-AATATTATAC-AATGATTAACGATCTAATACACTAATCAAAACTTTTAAATACC-AGAGT-AAGTTGTGGT-TTTACGATTTA-TTAA-TAAATCGAAATAGC-TGAGCCAAT-TGT-TTTTTATTTCT--TCAAAGTGTG-CGAAAATT-ACCAGAATGAGCAGGATACTAGTA-----ATCC-G-GACCAACTA--TTTAAATAATTATGTAGT-AGGCCTTATAATTTTTAT-CATAA-AATGA-CGAT-ACGAA-C-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGAT--A------------AT-----ATACGA--CTGATAA-T----A-AT------TAAAA--------AGATGA-T-TTTTT--TC-TATGT--CGCACT---------T---T----------C------A---------T----------TTCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-A-TA-AATTTATACTGGAAAACTGCC-GATTT--CCGTATTCACACTTTT-CCAAAATTC-ATATTGTTTG----CAG-CCAA-C-------A---------A-CCAACACCA-TA-T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-C-A---AACCT-G-T--AAAATATATA--TC-T-GGTTG-TT--GCCCG-C--A-AAA-GT-ATT-TAT-TTTT-GCT-AAA-GTTTATCT-ATATTTCATTTTGGC--TT-CAA--ATT-A--ACAGA-TTCCAC-TAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-T-CAC-GCCACGACTCAT---AAT---AA--A-CA-TTACG----GTCCTCTTTC-TTGT-AGGT---A-GAATTAGGA
gi|22 : TATAATATTCTTACACGA-ACGG-TACTG-CTCTAA-GATGATATTTT-TTGAC-GAGATAGAAATAAAACTCGAGATT
gi|24 : tGATAA---ATTATAGC---------GC-A-TA-AATTCATGCTGGGAAACTGCC-GAT
gi|25 : TGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGACTTGAT--A------------AC-----AT
gi|26 : ------A-CA------T----------ATCG-TTTC-CAGGGAGGA
gi|3 : tcatcacagcaCTAATCAAAACTTTTAAATACC-AGAGT-AAGTTGTGGT-TTTAC-ATTTAATTAAATAAATCGAAA--GCGTGAGCCG---TGT-TTTTTATTTCT--TCAAAGTGTGTCGAAAATTTAACAGAATGTGCGGGATGCTAGTA-----AACC------CAA--A--CCTAA-----TATGTAGT-AGGCCTTATAATTTTTATGCATAAGAATGAACGAT-ACAAAACGAATGA-T-TA-T--ACGCAAGTCC-TCT--CTGT-GAGATTTGAT--ACGTGTA------GC-----ATACGGAGCCAATA--T----AGAT------TTAAA--------AGATTAGTGTTTTT--TC-AATGT--CGCACT---------T---TGCATAACAG-C------AGCA------T----------TTCG-TTTC-CAGGA--GATGA---AATATAATTA-------GC-AACA-AATTCATACTAGAAAACTGAA-CATTT--CCGTATTCACACTTTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA-C-------A---------ACCCAACACCA-TA----TGATATT---GAAG-AAAAGG--AAG----TATCAAAAGGGATAA---C-A---AACCTCG-TA-AAAATATATAATTCTT-GGTTG-TT--G-CCG-CCAA-AAA-GTAAAT-TA--TTTT-GCT-AAA-GTTTA-CT-ATA------TTTGGC---T-CAA--ATCAA--ACAGATTTCCGCGAAAA--A--AA-C--CCATCACTTTGACGCACC-----TGC-CAC-G--AC---TCAT---AAT--AAA--A-CA-TTAC-----GTCA--TTTC-TTGT-AGGT---A-GGATTAG
gi|4 : T-AAGAA-C-AATGA-TTGA-T--ACGCAAGTC--TCTG-CTGTTGAGATTTGAT--ATATCGTAATGCCAT-----ATACGA--CAAATAA-T----G-AT------TAAAA--------AGATTA-TGTTTTT--TCCGATGT--CACACTGTTCTGCCAT---T----------C------A-CA------CGCACTATTTGTTCG-TTCCTCAGGCGGCATGCGGCATT-TAGTAAAGGACTGGC-A-CA-AAT-CATACTGGACAGCTGCCCGATTTAGCGGTATTCACACTTTT-CCAAAATTCTATATTGGTTGATGGCAG-CCAAAC-------A---------A-C-AACACCAGTAGT--TGA-ATT---GA-G-AAA--G--A------TATCAAAA-GGATAA-T-C-A---AACCT-GGTA-AAAATATTTA--TT-C-TGTTG-TT--GCCCG-C--AGAAA-GT-ATG-TATGTTTT-GCT-AAA-GTTTATCTGATA------TTTG-C--TT-CAATAATC-A--ACAGA-TTCCGC-GAAA--C--AA-CGTCCA--AC-TTGACGCACC-----T-CTCAC-G--ACG--TCATAG-AAT--AAA--A-CATTTACT----GTCAT-TTTC-TTGT-AGGT---GTAGATTAGatacgtcctatatgtgtatatgaaataataattcacttactatgaaagttaaaataaaaaatctcggcggtaaatgagccacaataacgtcccttgttcc
gi|5 : TTAAATAATTATGTAGT-AGGCCTCATCACTTTTAT-CATAA-AATGACCTAT-AC-AA-C-AATGATT-GA-TAAACGCAAGTCCTTCTG-CTGT-GAGATTTGAT--AC-----------ATTTAGCATACGA--CCAATAA-T----A-AT------T-AAA--------AGATTA-TGTTTTT--TC-ATTGT--CGCACT---------TGCAT----------CACACTAA-CA------T----------TTTG--TTC-TAGGGAGGATAA---ATTATAAC---------GC-A-CA-AA-TCATACTGGAAAACTGCC-GATGT--CCGTATTCA-AC-TTT-CCAAAATTC-ATAGTGTTTT----CA--CCAA-C-------A---------A-CCAACAC---TA-T--TGATATT---GAAG-AAA--G--AA-----TATACAA--GGATAA-T-C-A---AA-CT-G-TA-AA---ATATA--TC-T-GGTTGCTT--ACCCG-C--A-AAA-GT-ATT-TA--TTTT-GCT-AAA-GTTTATCT-ATA------TTT-----------------------------CGC-GAAA--CCAAA-C--CCA--AC-TTGACGCACC-----T-C-CACAG--ACG--TCAT---GATAAAAA--A-CA--TAC-----GTCAT-TTTC-TTGT-AGG----A-GGATAAGattacgtgctatgatgtgtatatgaaatagtaatgtcagcttactatgcaagttggaaaaattaaaaaagaaatctcggcggtaaatagccaataacggtccttgttct
gi|6 : TATTTGTATACT-AGGCCTTACCATGTTTAT-CATAA-AATGG-TGAT-TCGAA-C-AATGA-T-AA-T--ACGCAAGCCCCTCAG-CTGT-GAAATTTGAT--A------------AT-----ATGTGA--TCGATAA-TTACAA-ATATTATGTGAAATCTTACCCATGGTA-TGTTTTTCTTT-AATGT--TGCACT---------T---TGTATCACCA-C------AACA------A----------TTCG-TTTC-CAGGGAGAATAA---ATTATAAC---------GC-A-CA-AATTCACACTGGAAAACTGCC-GATTT--CCGTATTCACACTTTT-CCAAAATTC-ATATTGTTTG----GAG-CCAA-C-------A---------A-CCCACACCG-TA-A--TGATATT---GAAG---A--G--CATT---TTTTAAA--GGATAA-T-C-A---AACCT-G-T--AAACTATAAA--TA-T-GGTTA-CT--GTGCG-C--A-AAA-GT-GTT-TAC-TTTT-GCT-AAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATT-A--ACAG--TT--------------AA-C--CAA--ACTTTGACGCACC-----T-C-TAC-G--ACG--TCAT---AAT--AAA--A-TA-TTACG----attacgtcctatatgtagtatatgaaataaagtatttacagctttacttattggaagttgaaaaaaattaaaaaaaaattcggcggtaaataacctataacgtcccttgttct
gi|7 : tgtagtTTTCT--TC-AATGT--CGCACT---------T---TTCAT------C------A-CAGTAATAT----------TTCG-TTTC-CAGGGAGGATAA---ATTAAAAC---------GC-A-AA-AATTCCTACTGGAAAACAGCC-GATTT--CCGCACTCACACTTTT-CAAAATTTC-ATATTGTTTG----CAG-CCAA-C-------A---------A-CCAACATCA-TA-T--TGATATT---GAAGAAAA--A--AA-----TATTAAA--GGATAACC-C-A---AACCT-G-T--AAAATATAAA--TC-T-GGTTG-TT--GTGCG-C--A-AAA-GT-G-T-TAT-CTTT-GCT-AAA-GTTAATCT-ATA------ATTGGG--TT-CAA--ACC-A--ACAGA-TTCGGC-TAAA--C--AA-C--CCA--ACTTTGACGCACCTTAAAT-T-CAC-G--ACG--TCAT---AAT--AAA--A-CA-TTAC-----GTCAT-TTTC-TTGT-AAGT---A-GGATTAGGAtaatattacgtcctatatgtgta
gi|8 : CACTTTT-CCAAAATTC-ATATTGTTTG----CAGACCAA-CTTCACTCATT-------A-CCGAC-CAA-TA-TCTTGATTTTTTGAAAG-AAA--GTAGA-----TAT--AT--AGATAA-T-CCA---AACCT-T-TA-AAA-TATTTA--TC-T-GGTTG-TTATGCCGG-C--A-AAAAGT-ATTGTAT-TTTTTGCTTAAA-GTTTATCT-ACA------TTTGGC--TTCCAA--ATC-AACACAGA-TTCCGC-TAAAACC--AACC--CCA--ACTTTGACGCACC-----T-T-CGT----ACG--TCATAA-AAT--GAA--ACCATTTAC-----GTCA--TTTC-TTGT-AGGT---G-GGATTAGGAttacgtcctatatgtacaaatgaaataagtaattcagcttacaatgaaagttgaaaaaatgaaaaaaaaaatattggcggctaatagccaataacgtcccttgttct
gi|9 : TTTC-TCAAAGTTC--TATTGTTTG----CAG-CCAA-C-------ATCACTCATTA-CCGAC-CAA-TA-TCTTGAT-TT---AATG-AAA--G--AAATAGATAT-AAT--AGATAA-TTC-ATTCAACCT-G-TGTAAAATAT-TA--TC-T-GAGTG-TTATGCCGG-C--A-AAA-GT-ATT-TAT-TTTTTGCT-AAAAGTTTATCT-ACA------TTTGGC--TT-CAA--ATC-AACACAGACTTCCGC-TAAAC-C--AA-C--CCA--ACTTTGACGCACC-----T-T---C-G--ACG--TCATAAAAAT--GAAACA-CA-TTACATTACGTCAT-TTTC-TAGT-AGGT---G-GGATTAGGAttacgtcctattatgtataaatgaaacaagtaattccagcttactattgaaagtttgaaaaaattgaaaaaatattccggcggtaatagccaataacgtcctgtgtt
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACGTCCTATATGTATAAATGAAACAAGTAGGCCTAATTCAGCTTATTATGAAAGTTGAAAAAATGAAAAAAATCTTGGCGGTAA
Unaligned ( gi|19 ): CCCCCCTCCCCACTTTCAGTGTACAAAGACCCCTTTTTTTTGTTTTTTTTTGTTTTTTTTTTGCTTGTTCACAAAATTTTGA
Unaligned ( gi|20 ): AGTAATTCAGCTTACTATGAAAGTTGAAGAAATAAAAAAAATCTCGGCGGTAAATAGCCAATAACGTCCCTTGTTCTT
Unaligned ( gi|21 ): TAATTCAGCTTACTATGAAAGTTGAAAAAATGAAGGAAAAATATCGTCTGTAAATAGCCAATAACGTCCCTTGTTCT
Unaligned ( gi|23 ): TGTGTAAATGAAACAAGTAATTCAGCTTACTGTTGAAAAAATGGAAAAAAAA
Alignments
lowQualScore : 444444444444444444 2222222222222 1111 1111111 33333333333333333333333 1 333333333 111111 3333333333333333333333333 111 11 3333333333333333333333333333 1111111 444 22 22222222222222 1 1 1 1 1 1 1 1 6666666666666 222 1 1 1 66666666666666666 1 1 1 1 1 22 2 1 2222 1 11 1 222 33333333 111 11 1 44444444444444444444444444444 11111111111111 22222222 99999999999999999999999999999999999999 111111 222222222 1 111 333333333 11111 22222 11 111 11 11 111 111111 11 11111 11111 111 1111111
lowQualScore : 888888888888888888 88 0 7 7777777777777 66 0 0000 33 6666666 66666666666666666666666 66 5 1 111111111 666666 5 5555555555555555555555555 000 5 55 1111111111111111111111111111 5 1 77 4444444 8888 8 8 111 22 44444444444444 5 333 3 3 3 3 3 7 3 3 3333333333333 111 5 22 5 1 5 00000000000000000 1 5 5 3 3 3 6 22 3 7 7 3 5555 3 88 0 3 111 6 99999999 0 444 6 33 6 7 6 1 1 6 6 666 5 5 5 0 5 5 66 5 5 44444444444444444444444444444 1 99 2 6 99999999999999 7 44444444 6 6 77 5 77 00000000000000000000000000000000000000 444444 5 5 888 666666666 0 5 5 77 4 4 9999 4 222 000000000 4 1 1 4 66666 777 4 66 66 11111 99 00 555 777 1 4 4 88 7 66 4 4 4 66 66 4 00 4 4 4 4 222 4 4 4 4 777777 66 4 66 4 22 99 0 77 22222 4 66 55 0 00000 444 4 55 55 888 55 3333333 4 7 7 3 55 4 4 777 4
lowQualScore : .................. .. . . ............. .. . .... .. ....... ....................... .. . . ......... ...... . ......................... ... . .. ............................ . . .. ....... .... . . ... .. .............. . ... . . . . . . . . ............. ... . .. . . . ................. . . . . . . . .. . . . . .... . .. . . ... . ........ . ... . .. . . . . . . . ... . . . . . . .. . . ............................. . .. . . .............. . ........ . . .. . .. ...................................... ...... . . ... ......... . . . .. . . .... . ... ......... . . . . ..... ... . .. .. ..... .. .. ... ... . . . .. . .. . . . .. .. . .. . . . . ... . . . . ...... .. . .. . .. .. . .. ..... . .. .. . ..... ... . .. .. ... .. ....... . . . . .. . . ... .
lowQualScore : 777777777777777777 55 7 3 5555555555555 99 1 6666 11 2222222 99999999999999999999999 99 0 4 666666666 444444 7 7777777777777777777777777 000 7 77 6666666666666666666666666666 7 7 44 7777777 2222 0 8 777 00 33333333333333 0 000 3 3 3 3 3 3 3 3 7777777777777 000 0 00 0 0 5 55555555555555555 0 5 0 3 3 3 7 77 7 3 3 3 0000 3 33 7 3 777 5 88888888 2 888 5 88 0 5 7 0 7 7 7 888 7 7 7 0 0 0 99 0 7 00000000000000000000000000000 7 22 2 7 88888888888888 5 22222222 7 7 99 7 99 00000000000000000000000000000000000000 444444 0 0 888 999999999 0 0 0 99 4 4 4444 4 222 666666666 4 9 1 4 00000 888 4 11 11 77777 22 66 999 888 1 4 4 99 7 11 4 4 4 11 11 4 66 4 4 8 4 444 4 4 4 4 222222 11 4 11 4 22 77 1 00 22222 4 11 55 8 00000 444 0 55 55 000 55 0000000 0 3 3 6 77 0 0 000 0
consensus : CCCCCCCCCAC----T-----A-------GTGTTCGAATGAC-------------TTTTTTT--TTTT----TTTTTTTT-------GC----T--GTC---NAC-A--A--A--T-TTTGAA-GTT--TG-----CC------CC-CCCA-----C-CAC--------TTT--CTCTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TCAA-A-----ATCC-GT-CCTA-CGNCTCTGTT---TGTAG-AGTA-ATT-AAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCT-AAGATGATATTCT-TTGAC-GAGATA--AAT-AAAAC-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAA-TTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-A-CGACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----C-AC--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
Reference ( family-1761 ) : CCCCCCCCCAC----T-----A-------GTNNTCGAATGAC-------------TTTTTTT--TTTT----TTTTNTTT-------GC----T--GTC---GAC-A--A--A--T-TTTGAA-GTT--TG-----CC------CC-CCCA-----C-CAC--------TTT--CTCTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TCAA-A-----ATCC-GT-CCTA-CGNCTCTGTT---TGTAGAAGTA-ATTCAAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCT-AAGATGATATTCT-TTGAC-GAGATAG-GAT-AAAAC-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTTAATTAAATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAATTTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-A-CGACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----T-AC--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
gi|1 : CCCCCCCCAC----T-----ATTTCCATGTATTCGAATTAC-------------TTTTTTTAATTTA----TTTATTTT-------GC----T--GTT---GGC-A--A--AACT-TTTGATTGTT--TGGCACCCC------CC-CCCA-----CGCACCGCCCCCCTTT--TTCTGT---GAC-T--TTT--T--AAAAATTT-T---CG---CC---C-CCCCCCC-TTT-TCAT-A-----ATTC-GTTCCTA-CG-CTCTGTTGC-TGTA--AGTACATTCAAAACTATAATG-ACAAGTTATA-TATTCATACACAT-ACGGTTGCAGTCTCT-A-GATGATATTCTCTTGGC-CGGAT-------------CGATAGTGCAAGG---AACGCGCTAGATGTTGGT-AGGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCCCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTAAAATACCCAGAGTTAAGTTGTGGTATTTACGATT--ATT-AATAAATCG-AATAGT-TGAGCCAGTATGTATTTTTATTTCTATTCAAATCGTG-CGAA---TTACCAGAATGAGC-GGATACTAGTA-----A--CCGG-A-CGACTACTTTTAATTA--TATGT-GT-AGGCCTTATAA-TCTTAT-CAT-A-AATG-A-CGATAAC-GAAC-AATTATT-GATT--ACGCAAGTCCCTCTGCCTTC-GAGATTTGA------TTAA------------AT-----AT-CA--GGCTATAACT----A-AA------TTAAA--------AGATTA-T-TTTTT--TC-AATGTTCCGCACT---------TCC-T-------CACAGGC-AC--A----CATT------TCGTTTTC-C---GAGGATAA-----TATAGC---------GCAATACAATTCATACTGG-AAACTGCC-GATTT--CCGATTTCACAC-TTTTCC-AAATTC-ATATTGTTTG-----AG-C--A---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATC-AA--GGATAACT-CA---AA-CT-G-TA-AAAATAT-TA--TC-TGGGTTG-T--T--GCCCGCC--A-AAAGT-A-T-TA-T-TTTT-GC-TAAA-G-TTATCG-AAAT-----TTTGGCGTTT-CAA--ATC-A--ACAGG-ATTCGC-GAAA--C--AA-C--CC---ACTTTGGAGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTCTTTGTGAGGTATGA-GGATTGG
gi|10 : CCCTCCCCCAC----TGTTTTA-------GTGTTCAAATGCC-------------TTTTTTT--TTTT----TGCTTTTT-------GCA---C--GTC---TAA-A--AT-A--T-TTTGAG-CTT--TGTTGCTCC------CC-CCCACGCTCC-CAC--------TT----TCTGTAAGGAT-TAATTG--A--AAG----TAT---TG----C---C-CACACCCACTT-TCGA-AAAAATATAC-AG-CCTA-CGACTCTGTTTAATGTAGAAGTA-TTTAAAAACattaccgtcctttatgtgtatatgatgaactagtaattcagccttatgataagttgacaaaaataaaaaaatcccggcgggtaaatacccaataacgtcccttgtt
gi|11 : C-------------TTTTTTT--CTTT----TTTTTTTG-------GCGCGTT--GTG---CAC-AG-A--A--TGTTTGAAAGTT--TG-----GC------CC-CCCC-----C-CAC--------CTCACCTCTGT---GAT-T--TTTAAG--AAG----T-TATCCG---CC---CACTCCCCTACTT--CAA-A-----ATCA-AT-CTTAGCGCCTCTGaacatcaacgatggca
gi|12 : cccctccctacctcagtgtactttctttcatcA--ACTTTGACACACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-------------------TGT-AGGT---A-GGATTAGGAagatgagtttac
gi|13 : CCCCCCCCACACATT-----A-------GTGAACAAATGCC-------------TCTTTTT--T-------TTTTTTTTTTGTTTGGC----T---TCACAAAT-A--A--A--T-TTTGAA-GTT---------CC------CCACCCA-----C-C------------T--TTCTGT---AATATTATTT--T--AAA----G-T---CGTGACCCTAC-CCCCCCCACTT-TCAA-A-----ATCttacgtcctatatgtgtatatgaaataagtaattcagcttactatgaaagttgaaaaaataaaaataaaaatctcggcggtaaatagccaataacgtcccttgttc
gi|14 : CCCCCCCC--T----C-----A-------GT-TTCAAA-GAC-------------TTTTTTT--TTTTTCTGTTTTATTT-------GC----T--GCT---CAC-AACA--A--T-TTTG-A-GTC--TC-----CC------CC-CCCC-----C-CCC--------TTT--C-CCGT----AT-T--TTT--T--A-------------G---TC---C-CCTTCCCTCCT-TCAACA-----ATCCAGT-CCTA-CCGCTCTGag
gi|15 : A-TTAC-GTCCAT-TTTC-TTGT-A-GT---A--GATTGGGA
gi|16 : -------------TTTTTTT--TTTT----TTTTTTTT-------GC----TA-GTC----AC-AT-AGCA--T-TTTGAA-GTCTATG-----CCATGCCACC-CCCACCCC-C-CAC--------TT----TCTGT---GAT-T--TTT--TGAAAG----T------G---CT---G-GCCCCCCAATTCTCAA-A-----ATCttacgtcctatatgtgtatatgaaataagtaatcagcttactatgaaagttgaaaaaatataaaatctggcggtaaatagccataacgtcttgtt
gi|17 : actttttCGGGATACTAGTACTGTAA--CCCGTG-CGACTA--TTTAAATAATTATGTAGTTA---TTTATCATTTTTAT-CA-AA-AATG-A-CGAT-AA-GAAC-AATGA-T-GA-T--ACGCAAGTCACTCTG-Ca
gi|19 : CCCCTCCCCAC----TTTC--A-------GTGTACAAA-GACCCCTTTTTTTTGTTTTTTTT--TGTT----TTTTTTTT-------GCT---T--GTT---CACAA--A--A--T-TTTGA
gi|2 : ccCCCCCTTCCAC----T-----A-------GTCATCGAATGAC-------------CTTTT----TTTT----TTT--GTT-------GC----TTAGTC---GAC-A--A--A--T-TTTGAA-GTG--TG-----CC------CC-CCCG-----C-CAC--------TTT--CCCTGT---GAC-T--TTT--T--AAG----T-T---TG---CC---C-TCCTCCCACTT-ACAA-T-----ATCC-GT-CCTA-AGCCTCTGCT---TGTAG-AGTA-AT-----------ATGCACATTATATA-TATTCTTACACGAGACGTG-GCAG-CTCTAAAGATGATATTCT-TTGACGGAGATA--AATAAAAAC-TGAGATTGCAAAGGAAAAC-CGCTAAGTGTTCTTGACGA-TCTGGATTCAGT-----------------TTTCGCC-TAATATTATA-CAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCAAT-TGT-TTTTTATTTC--TTCAAAGTGTG-CGAAAA-TTACCAGAATGAGCAGGATACTAGTA-----AT-CCGG-ACCAACTA--TTTAAATAATTATGTAGT-AGGCCTTATAATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACTGATAA-T----A-AT------TAAAA--------AGATGA-T-TTTTT--TC-TATGT--CGCACT---------T---T------------------------CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ATA-AATTTATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-T--AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATATTTCATTTTGGC--TT-CAA--ATT-A--ACAGA-TTCCAC-TAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-T-CAC-GCCACGACTCAT---AAT---AA-------A-CA-TTACGGTC-CTCTTTC-TTGT-AGGT---A-GAATTAGGA
gi|22 : TATAATATTCTTACACGA-ACGGT-ACTG-CTCT-AAGATGATATTTT-TTGAC-GAGATAGAAAT-AAAACTCGAGATT
gi|24 : tGATAA---ATTATAGC---------GC-ATA-AATTCATGCTGGGAAACTGCC-GAT
gi|25 : TGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGACTTGA------T--A------------AC-----AT
gi|26 : --A----CATA------TCG-TTTC-CAGGGAGGA
gi|3 : tcatcacagcaCTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTAC-ATTTAATTAAATAAATCGAA--AGCGTGAGCCG---TGT-TTTTTATTTC--TTCAAAGTGTGTCGAAAATTTAACAGAATGTGCGGGATGCTAGTA-----AACCCAA-A-C--------CTAA-----TATGTAGT-AGGCCTTATAATTTTTATGCATAAGAATGAA-CGAT-ACAAAACGAATGA-T-TA-T--ACGCAAGT-CCTCT--CTGT-GAGATTTGATACGTGT--A------------GC-----ATACGGAGCCAAT-A-T----AGAT------TTAAA--------AGATTAGTGTTTTT--TC-AATGT--CGCACT---------T---TG------CA----TAAC--AGCAGCATT------TCG-TTTC-CAGG--AGATGA---AATATAATTA-------GCAACA-AATTCATACTAGAAAACTGAA-CATTT--CCGTATTCACACTTTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------ACCCAACACCA-TA-----TGATATT---GAAG-AAAAGG--AAG----TATCAAAAGGGATAA---CA---AACCTCG-TA-AAAATATATAATTCTT-GGTTG-T--T--G-CCG-CCAA-AAAGTAAAT-TA---TTTT-GC-TAAA-GTTTA-CT-ATA------TTTGGC---T-CAA--ATCAA--ACAGATTTCCGCGAAAA--A--AA-C--CCATCACTTTGACGCACC-----TGC-CAC-G--AC---TCAT---AAT--AAA-------A-CA-TTAC-GTC-A--TTTC-TTGT-AGGT---A-GGATTAG
gi|4 : T-AA-GAAC-AATGA-TTGA-T--ACGCAAGTC--TCTG-CTGTTGAGATTTGA------T--ATATCGTAATGCCAT-----ATACG--ACAAATAA-T----G-AT------TAAAA--------AGATTA-TGTTTTT--TCCGATGT--CACACTGTTCTGCCAT---T-------CA----C-AC--G----CACTATTTGTTCG-TTCCTCAGGCGGCATGCGGCATT-TAGTAAAGGACTGGC-ACA-AAT-CATACTGGACAGCTGCCCGATTTAGCGGTATTCACAC-TTTTCCAAAATTCTATATTGGTTGATGGCAG-CCAAA--CA---------A-C-AACACCAGTAG-T--TGA-ATT---GA-G-AAA--G--A------TATCAAAA-GGATAA-T-CA---AACCT-GGTA-AAAATATTTA--TT-C-TGTTG-T--T--GCCCG-C--AGAAAGT-ATG-TA-TGTTTT-GC-TAAA-GTTTATCTGATA------TTTG-C--TT-CAATAATC-A--ACAGA-TTCCGC-GAAA--C--AA-CGTCCA--AC-TTGACGCACC-----T-CTCAC-G--ACG--TCATAG-AAT--AAA-------A-CATTTACTGTC-AT-TTTC-TTGT-AGGT---GTAGATTAGatacgtcctatatgtgtatatgaaataataattcacttactatgaaagttaaaataaaaaatctcggcggtaaatgagccacaataacgtcccttgttcc
gi|5 : TTAAATAATTATGTAGT-AGGCCTCATCACTTTTAT-CATAA-AATG-ACCTAT-AC--AAC-AATGATT-GA-TAAACGCAAGTCCTTCTG-CTGT-GAGATTTGA------T--AC-----------ATTTAGCATACG--ACCAATAA-T----A-AT------T-AAA--------AGATTA-TGTTTTT--TC-ATTGT--CGCACT---------TGCAT-------CA----C-ACTAA----CATT------TTG--TTC-TAGGGAGGATAA---ATTATAAC---------GC-ACA-AA-TCATACTGGAAAACTGCC-GATGT--CCGTATTCA-AC--TTTCCAAAATTC-ATAGTGTTTT----CA--CCAA---CA---------A-CCAACAC---TA--T--TGATATT---GAAG-AAA--G--AA-----TATACAA--GGATAA-T-CA---AA-CT-G-TA-AA---ATATA--TC-T-GGTTGCT--T--ACCCG-C--A-AAAGT-ATT-TA---TTTT-GC-TAAA-GTTTATCT-ATA------TTT-----------------------------CGC-GAAA--CCAAA-C--CCA--AC-TTGACGCACC-----T-C-CACAG--ACG--TCAT---GATAAAAA-------A-CA--TAC-GTC-AT-TTTC-TTGT-AGG----A-GGATAAGattacgtgctatgatgtgtatatgaaatagtaatgtcagcttactatgcaagttggaaaaattaaaaaagaaatctcggcggtaaatagccaataacggtccttgttct
gi|6 : TATTTGTATACT-AGGCCTTACCATGTTTAT-CATAA-AATG-G-TGAT-TC-GAAC-AATGA-T-AA-T--ACGCAAGCCCCTCAG-CTGT-GAAATTTGA------T--A------------AT-----ATGTG--ATCGATAA-TTACAA-ATATTATGTGAAATCTTACCCATGGTA-TGTTTTTCTTT-AATGT--TGCACT---------T---TGTATCACCA----C-A---A----CAAT------TCG-TTTC-CAGGGAGAATAA---ATTATAAC---------GC-ACA-AATTCACACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----GAG-CCAA---CA---------A-CCCACACCG-TA--A--TGATATT---GAAG---A--G--CATT---TTTTAAA--GGATAA-T-CA---AACCT-G-T--AAACTATAAA--TA-T-GGTTA-C--T--GTGCG-C--A-AAAGT-GTT-TA-C-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATT-A--ACAG--TT--------------AA-C--CAA--ACTTTGACGCACC-----T-C-TAC-G--ACG--TCAT---AAT--AAA-------A-TA-TTAC-GTA-AT-ATTattacgtcctatatgtagtatatgaaataaagtatttacagctttacttattggaagttgaaaaaaattaaaaaaaaattcggcggtaaataacctataacgtcccttgttct
gi|7 : tgtagtTTTCT--TC-AATGT--CGCACT---------T---TT------CA----TCAC--AGTAATATT------TCG-TTTC-CAGGGAGGATAA---ATTAAAAC---------GC-AAA-AATTCCTACTGGAAAACAGCC-GATTT--CCGCACTCACAC-TTTTCAAAATTTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACATCA-TA--T--TGATATT---GAAGAAAA--A--AA-----TATTAAA--GGATAACC-CA---AACCT-G-T--AAAATATAAA--TC-T-GGTTG-T--T--GTGCG-C--A-AAAGT-G-T-TA-T-CTTT-GC-TAAA-GTTAATCT-ATA------ATTGGG--TT-CAA--ACC-A--ACAGA-TTCGGC-TAAA--C--AA-C--CCA--ACTTTGACGCACCTTAAAT-T-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AAGT---A-GGATTAGGAacgtcctatatgtgta
gi|8 : CAC-TTTTCCAAAATTC-ATATTGTTTG----CAGACCAACTTCACTCATT---A-CCGAC-CAA-TATCT--TGATTTTTTGAAAG-AAA--GTAGA-----TAT--AT--AGATAA-TCCA---AACCT-T-T--AAAATATTTA--TC-T-GGTTG-TTAT--GCCGG-CA-A-AAAGT-ATTGTATT-TTTT-GCTTAAA-GTTTATCT-ACA------TTTGGC--TTCCAA--ATC-AACACAGA-TTCCGC-TAAAACC--AACC--CCA--ACTTTGACGCACC-----T-T-CGT----ACG--TCATAA-AAT--GAA-------ACCATTTAC-GTC-A--TTTC-TTGT-AGGT---G-GGATTAGGAttacgtcctatatgtacaaatgaaataagtaattcagcttacaatgaaagttgaaaaaatgaaaaaaaaaatattggcggctaatagccaataacgtcccttgttct
gi|9 : -TTTCTCAAAGTTC--TATTGTTTG----CAG-CCAA---CATCACTCATTA-CCGAC-CAA-TA--TCTTGAT-TT---AATG-AAA--G--AAATAGATAT-AAT--AGATAA-TTCATTCAACCT-G-TGTAAAATAT-TA--TC-T-GAGTG-T--TATGCCGG-C--A-AAAGT-ATT-TA-T-TTTTTGC-TAAAAGTTTATCT-ACA------TTTGGC--TT-CAA--ATC-AACACAGACTTCCGC-TAAAC-C--AA-C--CCA--ACTTTGACGCACC-----T-T---C-G--ACG--TCATAAAAAT--GAAACACATTA-CA-TTAC-GTC-AT-TTTC-TAGT-AGGT---G-GGATTAGGAttacgtcctattatgtataaatgaaacaagtaattccagcttactattgaaagtttgaaaaaattgaaaaaatattccggcggtaatagccaataacgtcctgtgtt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACGTCCTATATGTATAAATGAAACAAGTAGGCCTAATTCAGCTTATTATGAAAGTTGAAAAAATGAAAAAAATCTTGGCGGTAA
Unaligned ( gi|20 ): AGTAATTCAGCTTACTATGAAAGTTGAAGAAATAAAAAAAATCTCGGCGGTAAATAGCCAATAACGTCCCTTGTTCTT
Unaligned ( gi|21 ): TAATTCAGCTTACTATGAAAGTTGAAAAAATGAAGGAAAAATATCGTCTGTAAATAGCCAATAACGTCCCTTGTTCT
Unaligned ( gi|23 ): TGTGTAAATGAAACAAGTAATTCAGCTTACTGTTGAAAAAATGGAAAAAAAA
Alignments
lowQualScore : 555555555555555555 444444444444444444444444444444444444444 333333333 111111 3333333333333333333333333 111 11 3333333333333333333333333333 1111111 444 22 33333333333333 1 1 1 1 1 22 1 1 4444444444444 222 1 1 1 66666666666666666 1 1 1 1 1 1 1 1 2222 1 11 1 1 33333333 1 11111111 1 44444444444444444444444444444 11111111111111 22222222 777777777777777777777777777777777777777 111111 222222222 1 111 333333333 11111 22222 11 111 11 11 111 111111 11 11111 11111 111 1111111
lowQualScore : 444444444444444444 5 0 7 66 66 888 5 5 777777777777777777777777777777777777777 66 5 5 5 111111111 666666 5 5555555555555555555555555 000 5 55 1111111111111111111111111111 5 1 0 5 4444444 8888 8 8 111 00 55555555555555 5 333 3 3 3 3 00 3 3 3333333333333 111 5 22 5 1 5 00000000000000000 1 5 5 3 3 3 6 7 3 3 7 7 3 5555 3 88 0 3 7 3 6 99999999 0 0 77777777 6 7 6 1 1 6 6 666 5 5 5 0 5 5 66 5 5 44444444444444444444444444444 1 99 2 6 99999999999999 7 44444444 6 6 77 5 77 444444444444444444444444444444444444444 444444 5 5 888 666666666 0 5 5 77 4 4 9999 4 222 000000000 4 1 1 4 66666 777 4 66 66 11111 99 00 555 777 1 4 4 88 7 66 4 4 4 66 66 4 00 4 4 4 4 222 4 4 4 4 777777 66 4 66 4 22 99 0 77 22222 4 66 55 0 00000 444 4 55 55 888 55 3333333 4 7 7 3 55 4 4 777 4
lowQualScore : .................. . . . .. .. ... . . ....................................... .. . . . ......... ...... . ......................... ... . .. ............................ . . . . ....... .... . . ... .. .............. . ... . . . . .. . . ............. ... . .. . . . ................. . . . . . . . . . . . . . .... . .. . . . . . ........ . . ........ . . . . . . . ... . . . . . . .. . . ............................. . .. . . .............. . ........ . . .. . .. ....................................... ...... . . ... ......... . . . .. . . .... . ... ......... . . . . ..... ... . .. .. ..... .. .. ... ... . . . .. . .. . . . .. .. . .. . . . . ... . . . . ...... .. . .. . .. .. . .. ..... . .. .. . ..... ... . .. .. ... .. ....... . . . . .. . . ... .
lowQualScore : 333333333333333333 2 7 3 99 99 888 0 0 888888888888888888888888888888888888888 99 0 0 7 666666666 444444 7 7777777777777777777777777 000 7 77 6666666666666666666666666666 7 7 1 7 7777777 2222 0 8 777 00 22222222222222 0 000 3 3 3 3 77 3 3 7777777777777 000 0 00 0 0 5 55555555555555555 0 5 0 3 3 3 7 3 3 3 3 3 3 0000 3 33 7 3 3 3 5 88888888 2 0 55555555 0 5 7 0 7 7 7 888 7 7 7 0 0 0 99 0 7 00000000000000000000000000000 7 22 2 7 88888888888888 5 22222222 7 7 99 7 99 000000000000000000000000000000000000000 444444 0 0 888 999999999 0 0 0 99 4 4 4444 4 222 666666666 4 9 1 4 00000 888 4 11 11 77777 22 66 999 888 1 4 4 99 7 11 4 4 4 11 11 4 66 4 4 8 4 444 4 4 4 4 222222 11 4 11 4 22 77 1 00 22222 4 11 55 8 00000 444 0 55 55 000 55 0000000 0 3 3 6 77 0 0 000 0
consensus : CCCCCCCCCAC----T-----A-------GTGTTCGAATGACT--TTTTTT--TTTTT---TTTT-TT-T---G------------C----T-GTC---NAC-A--A--A--T-TTTG-AA-GTT--TG-----CC------CC-CCCA-----C-CAC--------TT--TCTCTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TCAA-A-----ATCC-GT-CCTA-CGNCTCTGTT---TGTAG-AGTA-ATT-AAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCTAA-GATGATATTCT-TTGACG-AGAT--AAATAAAA-C-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAA-TTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-AC-GACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----C-A-C--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
Reference ( family-1761 ) : CCCCCCCCCAC----T-----A-------GTGTTCGAATGACT--TTTTTT--TTTTT---TTTT-TT-T---G------------C----T-GTC---NAC-A--A--A--T-TTTG-AA-GTT--TG-----CC------CC-CCCA-----C-CAC--------TT--TCTCTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TCAA-A-----ATCC-GT-CCTA-CGNCTCTGTT---TGTAG-AGTA-ATT-AAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCTAA-GATGATATTCT-TTGACG-AGAT--AAATAAAA-C-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAA-TTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-AC-GACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----C-A-C--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
gi|1 : CCCCCCCCAC----T-----ATTTCCATGTATTCGAATTACT--TTTTTTAATTTAT---TTAT-TT-T---G------------C----T-GTT---GGC-A--A--AACT-TTTG-ATTGTT--TGGCACCCC------CC-CCCA-----CGCACCGCCCCCCTT--TTTCTGT---GAC-T--TTT--T--AAAAATTT-T---CG---CC---C-CCCCCCC-TTT-TCAT-A-----ATTC-GTTCCTA-CG-CTCTGTTGC-TGTA--AGTACATTCAAAACTATAATG-ACAAGTTATA-TATTCATACACAT-ACGGTTGCAGTCTCTA--GATGATATTCTCTTGGCC-GGAT-------------CGATAGTGCAAGG---AACGCGCTAGATGTTGGT-AGGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCCCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTAAAATACCCAGAGTTAAGTTGTGGTATTTACGA-TT-ATT-AATAAATCG-AATAGT-TGAGCCAGTATGTATTTTTATTTCTATTCAAATCGTG-CG--AA-TTACCAGAATGAGC-GGATACTAGTA-----A--CCGG-AC-GACTACTTTTAATTA--TATGT-GT-AGGCCTTATAA-TCTTAT-CAT-A-AATG-A-CGATAAC-GAAC-AATTATT-GATT--ACGCAAGTCCCTCTGCCTTC-GAGATTTGA------TTAA------------AT-----AT-CA--GGCTATAACT----A-AA------TTAAA--------AGATTA-T-TTTTT--TC-AATGTTCCGCACT---------TCC-T-------CACAGGC-A-C--A----CATT------TCGTTTTC-C---GAGGATAA-----TATAGC---------GCAATACAATTCATACTGG-AAACTGCC-GATTT--CCGATTTCACAC-TTTTCC-AAATTC-ATATTGTTTG-----AG-C--A---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATC-AA--GGATAACT-CA---AA-CT-G-TA-AAAATAT-TA--TC-TGGGTTG-T--T--GCCCGCC--A-AAAGT-A-T-TA-T-TTTT-GC-TAAA-G-TTATCG-AAAT-----TTTGGCGTTT-CAA--ATC-A--ACAGG-ATTCGC-GAAA--C--AA-C--CC---ACTTTGGAGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTCTTTGTGAGGTATGA-GGATTGG
gi|10 : CCCTCCCCCAC----TGTTTTA-------GTGTTCAAATGCCT--TTTTTT--TTTTT---GCTT-TT-T---G------------CA---C-GTC---TAA-A--AT-A--T-TTTG-AG-CTT--TGTTGCTCC------CC-CCCACGCTCC-CAC--------TT----TCTGTAAGGAT-TAATTG--A--AAG----TAT---TG----C---C-CACACCCACTT-TCGA-AAAAATATAC-AG-CCTA-CGACTCTGTTTAATGTAGAAGTA-TTT-AAAAattaccgtcctttatgtgtatatgatgaactagtaattcagccttatgataagttgacaaaaataaaaaaatcccggcgggtaaatacccaataacgtcccttgtt
gi|11 : CT--TTTTTT--CTTTT---TTTT-TT-G---G------------CGCGTT-GTG---CAC-AG-A--A--TGTTTGAAA-GTT--TG-----GC------CC-CCCC-----C-CAC--------CTCACCTCTGT---GAT-T--TTTAAG--AAG----T-TATCCG---CC---CACTCCCCTAC-T-TCAA-A-----ATCA-AT-CTTAGCGCCTCTGacaacatcaacgatggca
gi|12 : cccctccctacctcagtgtactttctttcatcA--ACTTTGACACACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-------------------TGT-AGGT---A-GGATTAGGAagatgagtttac
gi|13 : CCCCCCCCACACATT-----A-------GTGAACAAATGCCT--CTTTTT--TTTTT---TTTT-TTGTTTGG------------C----T--TCACAAAT-A--A--A--T-TTTG-AA-GTT---------CC------CCACCCA-----C-C--------------TTTCTGT---AATATTATTT--T--AAA----G-T---CGTGACCCTAC-CCCCCCCACTT-TCAA-A-----ATCttacgtcctatatgtgtatatgaaataagtaattcagcttactatgaaagttgaaaaaataaaaataaaaatctcggcggtaaatagccaataacgtcccttgttc
gi|14 : CCCCCCCCTC----------A-------GT-TTCAAA-GACT--TTTTTT--TTTTTCTGTTTTATT-T---G------------C----T-GCT---CAC-AACA--A--T-TTTG--A-GTC--TC-----CC------CC-CCCC-----C-CCC--------TT--TC-CCGT----AT-T--TTT--T--A-------------G---TC---C-CCTTCCCTCCT-TCAACA-----ATCCAGT-CCTA-CCGCTCTGag
gi|15 : A-TTAC-GTCCAT-TTTC-TTGT-A-GT---A--GATTGGGA
gi|16 : T--TTTTTT--TTTTT---TTTT-TT-T---G------------C----TAGTC----AC-AT-AGCA--T-TTTG-AA-GTCTATG-----CCATGCCACC-CCCACCCC-C-CAC--------TT----TCTGT---GAT-T--TTT--TGAAAG----T------G---CT---G-GCCCCCCAATTCTCAA-A-----ATCttacgtcctatatgtgtatatgaaataagtaatcagcttactatgaaagttgaaaaaatataaaatctggcggtaaatagccataacgtcttgtt
gi|17 : actttttCGGGATACTAGTACTGTAA--CCCGTGC-GACTA--TTTAAATAATTATGTAGTTA---TTTATCATTTTTAT-CA-AA-AATG-A-CGAT-AA-GAAC-AATGA-T-GA-T--ACGCAAGTCACTCTG-Ca
gi|19 : CCCCTCCCCAC----TTTC--A-------GTGTACAAA-GACCCCTTTTTT--TTGTT---TTTT-TT-T---GTTTTTTTTTTGCT----T-GTT---CACAA--A--A--T-TTTG-A
gi|2 : ccCCCCCTTCCAC----T-----A-------GTCATCGAATGACC--TTTTTT--TTTTT---GTTG-CT-T---A-------------------GTC---GAC-A--A--A--T-TTTG-AA-GTG--TG-----CC------CC-CCCG-----C-CAC--------TT--TCCCTGT---GAC-T--TTT--T--AAG----T-T---TG---CC---C-TCCTCCCACTT-ACAA-T-----ATCC-GT-CCTA-AGCCTCTGCT---TGTAG-AGTA-AT-----------ATGCACATTATATA-TATTCTTACACGAGACGTG-GCAG-CTCTAAAGATGATATTCT-TTGACGGAGAT--AAATAAAAAC-TGAGATTGCAAAGGAAAAC-CGCTAAGTGTTCTTGACGAT-CTGGATTCAGTT-----------------TTCGCCT-AATATTATAC-AATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCAAT-TGT-TTTTTATTTC--TTCAAAGTGTG-CGAAAA-TTACCAGAATGAGCAGGATACTAGTA-----AT-CCGG-ACCAACTA--TTTAAATAATTATGTAGT-AGGCCTTATAATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACTGATAA-T----A-AT------TAAAA--------AGATGA-T-TTTTT--TC-TATGT--CGCACT---------T---T-------CA------------------TT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ATA-AATTTATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-T--AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATATTTCATTTTGGC--TT-CAA--ATT-A--ACAGA-TTCCAC-TAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-T-CAC-GCCACGACTCAT---AAT---AA-------A-CA-TTACGGTC-CTCTTTC-TTGT-AGGT---A-GAATTAGGA
gi|22 : TATAATATTCTTACACGA-ACGGT-ACTG-CTCTAA-GATGATATTTT-TTGACG-AGATAGAAATAAAA-CTCGAGATT
gi|24 : tGATAA---ATTATAGC---------GC-ATA-AATTCATGCTGGGAAACTGCC-GAT
gi|25 : TGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGACTTGA------T--A------------AC-----AT
gi|26 : ---T-------CA----C-AGC--AA---CATA------TCG-TTTC-CAGGGAGGA
gi|3 : tcaCTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTAC-ATTTAATTAAATAAATCGAA--AGCGTGAGCCG---TGT-TTTTTATTTC--TTCAAAGTGTGTCGAAAATTTAACAGAATGTGCGGGATGCTAGTA-----AACCCAA-AC---------CTAA-----TATGTAGT-AGGCCTTATAATTTTTATGCATAAGAATGAA-CGAT-ACAAAACGAATGA-T-TA-T--ACGCAAGT-CCTCT--CTGT-GAGATTTGATACGTGT--A------------GC-----ATACGGAGCCAAT-A-T----AGAT------TTAAA--------AGATTAGTGTTTTT--TC-AATGT--CGCACT---------T---TG------CA----TAA-C--AGCAGCATT------TCG-TTTC-CAGG--AGATGA---AATATAATTA-------GCAACA-AATTCATACTAGAAAACTGAA-CATTT--CCGTATTCACACTTTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------ACCCAACACCA-TA-----TGATATT---GAAG-AAAAGG--AAG----TATCAAAAGGGATAA---CA---AACCTCG-TA-AAAATATATAATTCTT-GGTTG-T--T--G-CCG-CCAA-AAAGTAAAT-TA---TTTT-GC-TAAA-GTTTA-CT-ATA------TTTGGC---T-CAA--ATCAA--ACAGATTTCCGCGAAAA--A--AA-C--CCATCACTTTGACGCACC-----TGC-CAC-G--AC---TCAT---AAT--AAA-------A-CA-TTAC-GTC-A--TTTC-TTGT-AGGT---A-GGATTAG
gi|4 : T-AA-GAAC-AATGA-TTGA-T--ACGCAAGTC--TCTG-CTGTTGAGATTTGA------T--ATATCGTAATGCCAT-----ATACG--ACAAATAA-T----G-AT------TAAAA--------AGATTA-TGTTTTT--TCCGATGT--CACACTGTTCTGCCAT---T-------CA----C-A-C--G----CACTATTTGTTCG-TTCCTCAGGCGGCATGCGGCATT-TAGTAAAGGACTGGC-ACA-AAT-CATACTGGACAGCTGCCCGATTTAGCGGTATTCACAC-TTTTCCAAAATTCTATATTGGTTGATGGCAG-CCAAA--CA---------A-C-AACACCAGTAG-T--TGA-ATT---GA-G-AAA--G--A------TATCAAAA-GGATAA-T-CA---AACCT-GGTA-AAAATATTTA--TT-C-TGTTG-T--T--GCCCG-C--AGAAAGT-ATG-TA-TGTTTT-GC-TAAA-GTTTATCTGATA------TTTG-C--TT-CAATAATC-A--ACAGA-TTCCGC-GAAA--C--AA-CGTCCA--AC-TTGACGCACC-----T-CTCAC-G--ACG--TCATAG-AAT--AAA-------A-CATTTACTGTC-AT-TTTC-TTGT-AGGT---GTAGATTAGatacgtcctatatgtgtatatgaaataataattcacttactatgaaagttaaaataaaaaatctcggcggtaaatgagccacaataacgtcccttgttcc
gi|5 : TTAAATAATTATGTAGT-AGGCCTCATCACTTTTAT-CATAA-AATG-ACCTAT-AC--AAC-AATGATT-GA-TAAACGCAAGTCCTTCTG-CTGT-GAGATTTGA------T--AC-----------ATTTAGCATACG--ACCAATAA-T----A-AT------T-AAA--------AGATTA-TGTTTTT--TC-ATTGT--CGCACT---------TGCAT-------CA----C-A-CTAA----CATT------TTG--TTC-TAGGGAGGATAA---ATTATAAC---------GC-ACA-AA-TCATACTGGAAAACTGCC-GATGT--CCGTATTCA-AC--TTTCCAAAATTC-ATAGTGTTTT----CA--CCAA---CA---------A-CCAACAC---TA--T--TGATATT---GAAG-AAA--G--AA-----TATACAA--GGATAA-T-CA---AA-CT-G-TA-AA---ATATA--TC-T-GGTTGCT--T--ACCCG-C--A-AAAGT-ATT-TA---TTTT-GC-TAAA-GTTTATCT-ATA------TTT-----------------------------CGC-GAAA--CCAAA-C--CCA--AC-TTGACGCACC-----T-C-CACAG--ACG--TCAT---GATAAAAA-------A-CA--TAC-GTC-AT-TTTC-TTGT-AGG----A-GGATAAGattacgtgctatgatgtgtatatgaaatagtaatgtcagcttactatgcaagttggaaaaattaaaaaagaaatctcggcggtaaatagccaataacggtccttgttct
gi|6 : TATTTGTATACT-AGGCCTTACCATGTTTAT-CATAA-AATG-G-TGAT-TC-GAAC-AATGA-T-AA-T--ACGCAAGCCCCTCAG-CTGT-GAAATTTGA------T--A------------AT-----ATGTG--ATCGATAA-TTACAA-ATATTATGTGAAATCTTACCCATGGTA-TGTTTTTCTTT-AATGT--TGCACT---------T---TGTATCACCA----C-A----A----CAAT------TCG-TTTC-CAGGGAGAATAA---ATTATAAC---------GC-ACA-AATTCACACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----GAG-CCAA---CA---------A-CCCACACCG-TA--A--TGATATT---GAAG---A--G--CATT---TTTTAAA--GGATAA-T-CA---AACCT-G-T--AAACTATAAA--TA-T-GGTTA-C--T--GTGCG-C--A-AAAGT-GTT-TA-C-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATT-A--ACAG--TT--------------AA-C--CAA--ACTTTGACGCACC-----T-C-TAC-G--ACG--TCAT---AAT--AAA-------A-TA-TTAC-GTA-AT-ATTattacgtcctatatgtagtatatgaaataaagtatttacagctttacttattggaagttgaaaaaaattaaaaaaaaattcggcggtaaataacctataacgtcccttgttct
gi|7 : tgtagtTTTCT--TC-AATGT--CGCACT---------T---TT------CAT---C-A-C--AGTAATATT------TCG-TTTC-CAGGGAGGATAA---ATTAAAAC---------GC-AAA-AATTCCTACTGGAAAACAGCC-GATTT--CCGCACTCACAC-TTTTCAAAATTTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACATCA-TA--T--TGATATT---GAAGAAAA--A--AA-----TATTAAA--GGATAACC-CA---AACCT-G-T--AAAATATAAA--TC-T-GGTTG-T--T--GTGCG-C--A-AAAGT-G-T-TA-T-CTTT-GC-TAAA-GTTAATCT-ATA------ATTGGG--TT-CAA--ACC-A--ACAGA-TTCGGC-TAAA--C--AA-C--CCA--ACTTTGACGCACCTTAAAT-T-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AAGT---A-GGATTAGGAacgtcctatatgtgta
gi|8 : CAC-TTTTCCAAAATTC-ATATTGTTTG----CAGACCAACTTCACTCATT---A-CCGAC-CAA-TATCT--TGATTTTTTGAAAG-AAA--GTAGA-----TAT--AT--AGATAA-TCCA---AACCT-T-T--AAAATATTTA--TC-T-GGTTG-TTAT--GCCGG-CA-A-AAAGT-ATTGTATT-TTTT-GCTTAAA-GTTTATCT-ACA------TTTGGC--TTCCAA--ATC-AACACAGA-TTCCGC-TAAAACC--AACC--CCA--ACTTTGACGCACC-----T-T-CGT----ACG--TCATAA-AAT--GAA-------ACCATTTAC-GTC-A--TTTC-TTGT-AGGT---G-GGATTAGGAttacgtcctatatgtacaaatgaaataagtaattcagcttacaatgaaagttgaaaaaatgaaaaaaaaaatattggcggctaatagccaataacgtcccttgttct
gi|9 : -TTTCTCAAAGTTC--TATTGTTTG----CAG-CCAA---CATCACTCATTA-CCGAC-CAA-TA--TCTTGAT-TT---AATG-AAA--G--AAATAGATAT-AAT--AGATAA-TTCATTCAACCT-G-TGTAAAATAT-TA--TC-T-GAGTG-T--TATGCCGG-C--A-AAAGT-ATT-TA-T-TTTTTGC-TAAAAGTTTATCT-ACA------TTTGGC--TT-CAA--ATC-AACACAGACTTCCGC-TAAAC-C--AA-C--CCA--ACTTTGACGCACC-----T-T---C-G--ACG--TCATAAAAAT--GAAACACATTA-CA-TTAC-GTC-AT-TTTC-TAGT-AGGT---G-GGATTAGGAttacgtcctattatgtataaatgaaacaagtaattccagcttactattgaaagtttgaaaaaattgaaaaaatattccggcggtaatagccaataacgtcctgtgtt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACGTCCTATATGTATAAATGAAACAAGTAGGCCTAATTCAGCTTATTATGAAAGTTGAAAAAATGAAAAAAATCTTGGCGGTAA
Unaligned ( gi|20 ): AGTAATTCAGCTTACTATGAAAGTTGAAGAAATAAAAAAAATCTCGGCGGTAAATAGCCAATAACGTCCCTTGTTCTT
Unaligned ( gi|21 ): TAATTCAGCTTACTATGAAAGTTGAAAAAATGAAGGAAAAATATCGTCTGTAAATAGCCAATAACGTCCCTTGTTCT
Unaligned ( gi|23 ): TGTGTAAATGAAACAAGTAATTCAGCTTACTGTTGAAAAAATGGAAAAAAAA
Alignments
lowQualScore : 555555555555555555 444444444444444444444444444444444444444 333333333 111111 3333333333333333333333333 111 11 3333333333333333333333333333 1111111 444 22 33333333333333 1 1 1 1 1 22 1 1 4444444444444 222 1 1 1 66666666666666666 1 1 1 1 1 1 1 1 2222 1 11 1 1 33333333 1 11111111 1 44444444444444444444444444444 11111111111111 22222222 777777777777777777777777777777777777777 111111 222222222 1 111 333333333 11111 22222 11 111 11 11 111 111111 11 11111 11111 111 1111111
lowQualScore : 444444444444444444 5 0 7 66 66 888 5 5 777777777777777777777777777777777777777 66 5 5 5 111111111 666666 5 5555555555555555555555555 000 5 55 1111111111111111111111111111 5 1 0 5 4444444 8888 8 8 111 00 55555555555555 5 333 3 3 3 3 00 3 3 3333333333333 111 5 22 5 1 5 00000000000000000 1 5 5 3 3 3 6 7 3 3 7 7 3 5555 3 88 0 3 7 3 6 99999999 0 0 77777777 6 7 6 1 1 6 6 666 5 5 5 0 5 5 66 5 5 44444444444444444444444444444 1 99 2 6 99999999999999 7 44444444 6 6 77 5 77 444444444444444444444444444444444444444 444444 5 5 888 666666666 0 5 5 77 4 4 9999 4 222 000000000 4 1 1 4 66666 777 4 66 66 11111 99 00 555 777 1 4 4 88 7 66 4 4 4 66 66 4 00 4 4 4 4 222 4 4 4 4 777777 66 4 66 4 22 99 0 77 22222 4 66 55 0 00000 444 4 55 55 888 55 3333333 4 7 7 3 55 4 4 777 4
lowQualScore : .................. . . . .. .. ... . . ....................................... .. . . . ......... ...... . ......................... ... . .. ............................ . . . . ....... .... . . ... .. .............. . ... . . . . .. . . ............. ... . .. . . . ................. . . . . . . . . . . . . . .... . .. . . . . . ........ . . ........ . . . . . . . ... . . . . . . .. . . ............................. . .. . . .............. . ........ . . .. . .. ....................................... ...... . . ... ......... . . . .. . . .... . ... ......... . . . . ..... ... . .. .. ..... .. .. ... ... . . . .. . .. . . . .. .. . .. . . . . ... . . . . ...... .. . .. . .. .. . .. ..... . .. .. . ..... ... . .. .. ... .. ....... . . . . .. . . ... .
lowQualScore : 333333333333333333 2 7 3 99 99 888 0 0 888888888888888888888888888888888888888 99 0 0 7 666666666 444444 7 7777777777777777777777777 000 7 77 6666666666666666666666666666 7 7 1 7 7777777 2222 0 8 777 00 22222222222222 0 000 3 3 3 3 77 3 3 7777777777777 000 0 00 0 0 5 55555555555555555 0 5 0 3 3 3 7 3 3 3 3 3 3 0000 3 33 7 3 3 3 5 88888888 2 0 55555555 0 5 7 0 7 7 7 888 7 7 7 0 0 0 99 0 7 00000000000000000000000000000 7 22 2 7 88888888888888 5 22222222 7 7 99 7 99 000000000000000000000000000000000000000 444444 0 0 888 999999999 0 0 0 99 4 4 4444 4 222 666666666 4 9 1 4 00000 888 4 11 11 77777 22 66 999 888 1 4 4 99 7 11 4 4 4 11 11 4 66 4 4 8 4 444 4 4 4 4 222222 11 4 11 4 22 77 1 00 22222 4 11 55 8 00000 444 0 55 55 000 55 0000000 0 3 3 6 77 0 0 000 0
consensus : CCCCCCCCCAC----T-----A-------GTGTTCGAATGACT--TTTTTT--TTTTT---TTTT-TT-T---G------------C----T-GTC---NAC-A--A--A--T-TTTG-AA-GTT--TG-----CC------CC-CCCA-----C-CAC--------TT--TCTCTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TCAA-A-----ATCC-GT-CCTA-CGNCTCTGTT---TGTAG-AGTA-ATT-AAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCTAA-GATGATATTCT-TTGACG-AGAT--AAATAAAA-C-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAA-TTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-AC-GACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----C-A-C--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
Reference ( family-1761 ) : CCCCCCCCCAC----T-----A-------GTGTTCGAATGACT--TTTTTT--TTTTT---TTTT-TT-T---G------------C----T-GTC---NAC-A--A--A--T-TTTG-AA-GTT--TG-----CC------CC-CCCA-----C-CAC--------TT--TCTCTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TCAA-A-----ATCC-GT-CCTA-CGNCTCTGTT---TGTAG-AGTA-ATT-AAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCTAA-GATGATATTCT-TTGACG-AGAT--AAATAAAA-C-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAA-TTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-AC-GACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----C-A-C--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
gi|1 : CCCCCCCCAC----T-----ATTTCCATGTATTCGAATTACT--TTTTTTAATTTAT---TTAT-TT-T---G------------C----T-GTT---GGC-A--A--AACT-TTTG-ATTGTT--TGGCACCCC------CC-CCCA-----CGCACCGCCCCCCTT--TTTCTGT---GAC-T--TTT--T--AAAAATTT-T---CG---CC---C-CCCCCCC-TTT-TCAT-A-----ATTC-GTTCCTA-CG-CTCTGTTGC-TGTA--AGTACATTCAAAACTATAATG-ACAAGTTATA-TATTCATACACAT-ACGGTTGCAGTCTCTA--GATGATATTCTCTTGGCC-GGAT-------------CGATAGTGCAAGG---AACGCGCTAGATGTTGGT-AGGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCCCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTAAAATACCCAGAGTTAAGTTGTGGTATTTACGA-TT-ATT-AATAAATCG-AATAGT-TGAGCCAGTATGTATTTTTATTTCTATTCAAATCGTG-CG--AA-TTACCAGAATGAGC-GGATACTAGTA-----A--CCGG-AC-GACTACTTTTAATTA--TATGT-GT-AGGCCTTATAA-TCTTAT-CAT-A-AATG-A-CGATAAC-GAAC-AATTATT-GATT--ACGCAAGTCCCTCTGCCTTC-GAGATTTGA------TTAA------------AT-----AT-CA--GGCTATAACT----A-AA------TTAAA--------AGATTA-T-TTTTT--TC-AATGTTCCGCACT---------TCC-T-------CACAGGC-A-C--A----CATT------TCGTTTTC-C---GAGGATAA-----TATAGC---------GCAATACAATTCATACTGG-AAACTGCC-GATTT--CCGATTTCACAC-TTTTCC-AAATTC-ATATTGTTTG-----AG-C--A---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATC-AA--GGATAACT-CA---AA-CT-G-TA-AAAATAT-TA--TC-TGGGTTG-T--T--GCCCGCC--A-AAAGT-A-T-TA-T-TTTT-GC-TAAA-G-TTATCG-AAAT-----TTTGGCGTTT-CAA--ATC-A--ACAGG-ATTCGC-GAAA--C--AA-C--CC---ACTTTGGAGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTCTTTGTGAGGTATGA-GGATTGG
gi|10 : CCCTCCCCCAC----TGTTTTA-------GTGTTCAAATGCCT--TTTTTT--TTTTT---GCTT-TT-T---G------------CA---C-GTC---TAA-A--AT-A--T-TTTG-AG-CTT--TGTTGCTCC------CC-CCCACGCTCC-CAC--------TT----TCTGTAAGGAT-TAATTG--A--AAG----TAT---TG----C---C-CACACCCACTT-TCGA-AAAAATATAC-AG-CCTA-CGACTCTGTTTAATGTAGAAGTA-TTT-AAAAattaccgtcctttatgtgtatatgatgaactagtaattcagccttatgataagttgacaaaaataaaaaaatcccggcgggtaaatacccaataacgtcccttgtt
gi|11 : CT--TTTTTT--CTTTT---TTTT-TT-G---G------------CGCGTT-GTG---CAC-AG-A--A--TGTTTGAAA-GTT--TG-----GC------CC-CCCC-----C-CAC--------CTCACCTCTGT---GAT-T--TTTAAG--AAG----T-TATCCG---CC---CACTCCCCTAC-T-TCAA-A-----ATCA-AT-CTTAGCGCCTCTGacaacatcaacgatggca
gi|12 : cccctccctacctcagtgtactttctttcatcA--ACTTTGACACACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-------------------TGT-AGGT---A-GGATTAGGAagatgagtttac
gi|13 : CCCCCCCCACACATT-----A-------GTGAACAAATGCCT--CTTTTT--TTTTT---TTTT-TTGTTTGG------------C----T--TCACAAAT-A--A--A--T-TTTG-AA-GTT---------CC------CCACCCA-----C-C--------------TTTCTGT---AATATTATTT--T--AAA----G-T---CGTGACCCTAC-CCCCCCCACTT-TCAA-A-----ATCttacgtcctatatgtgtatatgaaataagtaattcagcttactatgaaagttgaaaaaataaaaataaaaatctcggcggtaaatagccaataacgtcccttgttc
gi|14 : CCCCCCCCTC----------A-------GT-TTCAAA-GACT--TTTTTT--TTTTTCTGTTTTATT-T---G------------C----T-GCT---CAC-AACA--A--T-TTTG--A-GTC--TC-----CC------CC-CCCC-----C-CCC--------TT--TC-CCGT----AT-T--TTT--T--A-------------G---TC---C-CCTTCCCTCCT-TCAACA-----ATCCAGT-CCTA-CCGCTCTGag
gi|15 : A-TTAC-GTCCAT-TTTC-TTGT-A-GT---A--GATTGGGA
gi|16 : T--TTTTTT--TTTTT---TTTT-TT-T---G------------C----TAGTC----AC-AT-AGCA--T-TTTG-AA-GTCTATG-----CCATGCCACC-CCCACCCC-C-CAC--------TT----TCTGT---GAT-T--TTT--TGAAAG----T------G---CT---G-GCCCCCCAATTCTCAA-A-----ATCttacgtcctatatgtgtatatgaaataagtaatcagcttactatgaaagttgaaaaaatataaaatctggcggtaaatagccataacgtcttgtt
gi|17 : actttttCGGGATACTAGTACTGTAA--CCCGTGC-GACTA--TTTAAATAATTATGTAGTTA---TTTATCATTTTTAT-CA-AA-AATG-A-CGAT-AA-GAAC-AATGA-T-GA-T--ACGCAAGTCACTCTG-Ca
gi|19 : CCCCTCCCCAC----TTTC--A-------GTGTACAAA-GACCCCTTTTTT--TTGTT---TTTT-TT-T---GTTTTTTTTTTGCT----T-GTT---CACAA--A--A--T-TTTG-A
gi|2 : ccCCCCCTTCCAC----T-----A-------GTCATCGAATGACC--TTTTTT--TTTTT---GTTG-CT-T---A-------------------GTC---GAC-A--A--A--T-TTTG-AA-GTG--TG-----CC------CC-CCCG-----C-CAC--------TT--TCCCTGT---GAC-T--TTT--T--AAG----T-T---TG---CC---C-TCCTCCCACTT-ACAA-T-----ATCC-GT-CCTA-AGCCTCTGCT---TGTAG-AGTA-AT-----------ATGCACATTATATA-TATTCTTACACGAGACGTG-GCAG-CTCTAAAGATGATATTCT-TTGACGGAGAT--AAATAAAAAC-TGAGATTGCAAAGGAAAAC-CGCTAAGTGTTCTTGACGAT-CTGGATTCAGTT-----------------TTCGCCT-AATATTATAC-AATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCAAT-TGT-TTTTTATTTC--TTCAAAGTGTG-CGAAAA-TTACCAGAATGAGCAGGATACTAGTA-----AT-CCGG-ACCAACTA--TTTAAATAATTATGTAGT-AGGCCTTATAATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACTGATAA-T----A-AT------TAAAA--------AGATGA-T-TTTTT--TC-TATGT--CGCACT---------T---T-------CA------------------TT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ATA-AATTTATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-T--AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATATTTCATTTTGGC--TT-CAA--ATT-A--ACAGA-TTCCAC-TAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-T-CAC-GCCACGACTCAT---AAT---AA-------A-CA-TTACGGTC-CTCTTTC-TTGT-AGGT---A-GAATTAGGA
gi|22 : TATAATATTCTTACACGA-ACGGT-ACTG-CTCTAA-GATGATATTTT-TTGACG-AGATAGAAATAAAA-CTCGAGATT
gi|24 : tGATAA---ATTATAGC---------GC-ATA-AATTCATGCTGGGAAACTGCC-GAT
gi|25 : TGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGACTTGA------T--A------------AC-----AT
gi|26 : ---T-------CA----C-AGC--AA---CATA------TCG-TTTC-CAGGGAGGA
gi|3 : tcaCTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTAC-ATTTAATTAAATAAATCGAA--AGCGTGAGCCG---TGT-TTTTTATTTC--TTCAAAGTGTGTCGAAAATTTAACAGAATGTGCGGGATGCTAGTA-----AACCCAA-AC---------CTAA-----TATGTAGT-AGGCCTTATAATTTTTATGCATAAGAATGAA-CGAT-ACAAAACGAATGA-T-TA-T--ACGCAAGT-CCTCT--CTGT-GAGATTTGATACGTGT--A------------GC-----ATACGGAGCCAAT-A-T----AGAT------TTAAA--------AGATTAGTGTTTTT--TC-AATGT--CGCACT---------T---TG------CA----TAA-C--AGCAGCATT------TCG-TTTC-CAGG--AGATGA---AATATAATTA-------GCAACA-AATTCATACTAGAAAACTGAA-CATTT--CCGTATTCACACTTTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------ACCCAACACCA-TA-----TGATATT---GAAG-AAAAGG--AAG----TATCAAAAGGGATAA---CA---AACCTCG-TA-AAAATATATAATTCTT-GGTTG-T--T--G-CCG-CCAA-AAAGTAAAT-TA---TTTT-GC-TAAA-GTTTA-CT-ATA------TTTGGC---T-CAA--ATCAA--ACAGATTTCCGCGAAAA--A--AA-C--CCATCACTTTGACGCACC-----TGC-CAC-G--AC---TCAT---AAT--AAA-------A-CA-TTAC-GTC-A--TTTC-TTGT-AGGT---A-GGATTAG
gi|4 : T-AA-GAAC-AATGA-TTGA-T--ACGCAAGTC--TCTG-CTGTTGAGATTTGA------T--ATATCGTAATGCCAT-----ATACG--ACAAATAA-T----G-AT------TAAAA--------AGATTA-TGTTTTT--TCCGATGT--CACACTGTTCTGCCAT---T-------CA----C-A-C--G----CACTATTTGTTCG-TTCCTCAGGCGGCATGCGGCATT-TAGTAAAGGACTGGC-ACA-AAT-CATACTGGACAGCTGCCCGATTTAGCGGTATTCACAC-TTTTCCAAAATTCTATATTGGTTGATGGCAG-CCAAA--CA---------A-C-AACACCAGTAG-T--TGA-ATT---GA-G-AAA--G--A------TATCAAAA-GGATAA-T-CA---AACCT-GGTA-AAAATATTTA--TT-C-TGTTG-T--T--GCCCG-C--AGAAAGT-ATG-TA-TGTTTT-GC-TAAA-GTTTATCTGATA------TTTG-C--TT-CAATAATC-A--ACAGA-TTCCGC-GAAA--C--AA-CGTCCA--AC-TTGACGCACC-----T-CTCAC-G--ACG--TCATAG-AAT--AAA-------A-CATTTACTGTC-AT-TTTC-TTGT-AGGT---GTAGATTAGatacgtcctatatgtgtatatgaaataataattcacttactatgaaagttaaaataaaaaatctcggcggtaaatgagccacaataacgtcccttgttcc
gi|5 : TTAAATAATTATGTAGT-AGGCCTCATCACTTTTAT-CATAA-AATG-ACCTAT-AC--AAC-AATGATT-GA-TAAACGCAAGTCCTTCTG-CTGT-GAGATTTGA------T--AC-----------ATTTAGCATACG--ACCAATAA-T----A-AT------T-AAA--------AGATTA-TGTTTTT--TC-ATTGT--CGCACT---------TGCAT-------CA----C-A-CTAA----CATT------TTG--TTC-TAGGGAGGATAA---ATTATAAC---------GC-ACA-AA-TCATACTGGAAAACTGCC-GATGT--CCGTATTCA-AC--TTTCCAAAATTC-ATAGTGTTTT----CA--CCAA---CA---------A-CCAACAC---TA--T--TGATATT---GAAG-AAA--G--AA-----TATACAA--GGATAA-T-CA---AA-CT-G-TA-AA---ATATA--TC-T-GGTTGCT--T--ACCCG-C--A-AAAGT-ATT-TA---TTTT-GC-TAAA-GTTTATCT-ATA------TTT-----------------------------CGC-GAAA--CCAAA-C--CCA--AC-TTGACGCACC-----T-C-CACAG--ACG--TCAT---GATAAAAA-------A-CA--TAC-GTC-AT-TTTC-TTGT-AGG----A-GGATAAGattacgtgctatgatgtgtatatgaaatagtaatgtcagcttactatgcaagttggaaaaattaaaaaagaaatctcggcggtaaatagccaataacggtccttgttct
gi|6 : TATTTGTATACT-AGGCCTTACCATGTTTAT-CATAA-AATG-G-TGAT-TC-GAAC-AATGA-T-AA-T--ACGCAAGCCCCTCAG-CTGT-GAAATTTGA------T--A------------AT-----ATGTG--ATCGATAA-TTACAA-ATATTATGTGAAATCTTACCCATGGTA-TGTTTTTCTTT-AATGT--TGCACT---------T---TGTATCACCA----C-A----A----CAAT------TCG-TTTC-CAGGGAGAATAA---ATTATAAC---------GC-ACA-AATTCACACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----GAG-CCAA---CA---------A-CCCACACCG-TA--A--TGATATT---GAAG---A--G--CATT---TTTTAAA--GGATAA-T-CA---AACCT-G-T--AAACTATAAA--TA-T-GGTTA-C--T--GTGCG-C--A-AAAGT-GTT-TA-C-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATT-A--ACAG--TT--------------AA-C--CAA--ACTTTGACGCACC-----T-C-TAC-G--ACG--TCAT---AAT--AAA-------A-TA-TTAC-GTA-AT-ATTattacgtcctatatgtagtatatgaaataaagtatttacagctttacttattggaagttgaaaaaaattaaaaaaaaattcggcggtaaataacctataacgtcccttgttct
gi|7 : tgtagtTTTCT--TC-AATGT--CGCACT---------T---TT------CAT---C-A-C--AGTAATATT------TCG-TTTC-CAGGGAGGATAA---ATTAAAAC---------GC-AAA-AATTCCTACTGGAAAACAGCC-GATTT--CCGCACTCACAC-TTTTCAAAATTTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACATCA-TA--T--TGATATT---GAAGAAAA--A--AA-----TATTAAA--GGATAACC-CA---AACCT-G-T--AAAATATAAA--TC-T-GGTTG-T--T--GTGCG-C--A-AAAGT-G-T-TA-T-CTTT-GC-TAAA-GTTAATCT-ATA------ATTGGG--TT-CAA--ACC-A--ACAGA-TTCGGC-TAAA--C--AA-C--CCA--ACTTTGACGCACCTTAAAT-T-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AAGT---A-GGATTAGGAacgtcctatatgtgta
gi|8 : CAC-TTTTCCAAAATTC-ATATTGTTTG----CAGACCAACTTCACTCATT---A-CCGAC-CAA-TATCT--TGATTTTTTGAAAG-AAA--GTAGA-----TAT--AT--AGATAA-TCCA---AACCT-T-T--AAAATATTTA--TC-T-GGTTG-TTAT--GCCGG-CA-A-AAAGT-ATTGTATT-TTTT-GCTTAAA-GTTTATCT-ACA------TTTGGC--TTCCAA--ATC-AACACAGA-TTCCGC-TAAAACC--AACC--CCA--ACTTTGACGCACC-----T-T-CGT----ACG--TCATAA-AAT--GAA-------ACCATTTAC-GTC-A--TTTC-TTGT-AGGT---G-GGATTAGGAttacgtcctatatgtacaaatgaaataagtaattcagcttacaatgaaagttgaaaaaatgaaaaaaaaaatattggcggctaatagccaataacgtcccttgttct
gi|9 : -TTTCTCAAAGTTC--TATTGTTTG----CAG-CCAA---CATCACTCATTA-CCGAC-CAA-TA--TCTTGAT-TT---AATG-AAA--G--AAATAGATAT-AAT--AGATAA-TTCATTCAACCT-G-TGTAAAATAT-TA--TC-T-GAGTG-T--TATGCCGG-C--A-AAAGT-ATT-TA-T-TTTTTGC-TAAAAGTTTATCT-ACA------TTTGGC--TT-CAA--ATC-AACACAGACTTCCGC-TAAAC-C--AA-C--CCA--ACTTTGACGCACC-----T-T---C-G--ACG--TCATAAAAAT--GAAACACATTA-CA-TTAC-GTC-AT-TTTC-TAGT-AGGT---G-GGATTAGGAttacgtcctattatgtataaatgaaacaagtaattccagcttactattgaaagtttgaaaaaattgaaaaaatattccggcggtaatagccaataacgtcctgtgtt
blockSeqs : TGTTTTA G T CC . CTG A G GTTTTTTTTTTGCTTGTTCACAAA . G A . TGTTGCT ATGCCA A CGCTCCCACTTT AAG A AA TAAAGTCGTGACCCTA A A C AAAAAT AGT G A TAA GA AT C TTA A G . . AA . G AGAAATAAAACT GAA . CT G C . . G . . . . . G T A A A A G AAT . . T A T G CTGTAA T CAACTA A A T C T G G AA . A G T T . AA . T TATATCGTAATGCCAT A GA G . TACAAATATTATG A TCTTACCC G G CT C . GTTCTGCCATTCACACG ATTTGT . T GGC AAAGGACTG A . C AG T T ATGG A CTT TCACTCATT C A C G TCT TTG A AG TA ATAGA CA AG CC TTC C C G GT A AT T . C TA AT . CA G A T G TG T T A G TTTCAT . C TA A AC AT GA CCA C GT TC TTAAA GC A CC AC AAA AA ACACATT C T G C TC . . . T
blockSeqs : ACATTA G T . . . . . GCGCGTTGTGCACAGA . . . . TATG . . CCACCTCACCT . . TA AAGAAGTTATCCGCC . A . CA AG . C . G . . . . A . . AAATAAAAAC . . . . T . . A . . G . . . A . A AAC . GACTA A A . A T . . AC . . . . . . . . . TACGTGTAGC A . A . AGAT T . . G . . . TTGCATAACAGCAG . . . . TA . . . . . . . . A CTCATT . A C . TCT . . . . TT CA A TC . C . . A A . . . . . . . A . . A . TT . . . . . . . . . AC AC T ACC . . . . CT . . . AG . . . T T . T . . . .
blockSeqs : TTTCA G T . . . . . TTGGCTTCACAAATAA . . . . TG . . CCCCCCACTTT . . . AAAGTATTGC . A . A AT . G G AT . . A A . A T . . A . . . . . . . . . TACATTTAGC A . A . AAT A . . G . . . TTGTATCACCACAA . . . . . . . . . . . . . . . . A C . GT . . . . G CA . TT . C . . A T . . . . . . . . . . T . T . . . . . . . . . . A G CC . . . . C . . . AA . . . . . . T . . . .
blockSeqs : TA C . . . . . . GCTAGTCACATAGC . . . . TC . . CCACTTTCC . . . TGAAAGTGCT . T . A GT . C . T . C C . . A . . . . . . . . . TAAT A . A . GAT G . . G . . . TTTCATCACAGTAA . . . . . . . . . . . . . . . . A C . T . . . . . AC . T . C . . A A . . . . . . . . . . T . C . . . . . . . . . . A G C . . . . T . . . . . . . . . . T . . . .
blockSeqs : A . . . . . . . GCACGTCTAAAAT . . . . TG . . CCCCTTTC . . . TAAGTTTGCC . A . A . . C T . . G . . . . . . . . . TAAC G . G . AAT . . . . . . . TGCATCACACTAA . . . . . . . . . . . . . . . . A C . T . . . . . TA . T . C . . . A . . . . . . . . . . T . T . . . . . . . . . . A T A . . . . C . . . . . . . . . . T . . . .
blockSeqs : . . . . . GCTGCTCACAACA . . . . . . . CCTTT . . . TAGTC . A . T . . . . . . . . . TAAT . . . TTCA . . . . . . . . . . . . . . . . A A . A . . . . . TA . T . C . . . A . . . . . . . . . . T . T . . . . . . . . . . A T C . . . . C . . . . . . . . . . T . . . .
blockSeqs : . . . . . AGTCGACAA . . . . . . . . . . . . . . . . . . . . . . . . A . T . . . . . A . T . C . . . T . . . . . . . . . . T . . . . . . . . . . . . . T C . . . . T . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : TTCA************** ** GCTGTTCACAAA*************************** ** TG******* CCCCTCACTTT************** TAAGTTCGCC****************** AT** TACTAT*********************** ** CA T** A* ****** ** ***
originalCons : CCCCCCCCCAC----T-----A-------GTGTTCGAATGACT--TTTTTT--TTTTT---TTTT-TT-T---G------------C----T-GTC---NAC-A--A--A--T-TTTG-AA-GTT--TG-----CC------CC-CCCA-----C-CAC--------TT--TCTCTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TCAA-A-----ATCC-GT-CCTA-CGNCTCTGTT---TGTAG-AGTA-ATT-AAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCTAA-GATGATATTCT-TTGACG-AGAT--AAATAAAA-C-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAA-TTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-AC-GACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGA------T--A------------AT-----ATACG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----C-A-C--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
finalCons : CCCCCCCCCACTTCA--------------GTGTTCGAATGACT--TTTTTT--TTTTT---TTTT-TT-TGCTGTTCACAAA---------------------------A--T-TTTG-AA-GTTTG-------CC------CC-CCCACCCCTCACTTT--------------CTGT---GAT-T--TTTTAAGTTCGCC------------------C-CCCCCCCACTT-TCAA-A-----ATCCAT--CCTA-CGNCTCTGTT---TGTAG-AGTA-ATT-AAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCTAA-GATGATATTCT-TTGACG-AGAT--AAATAAAA-C-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAA-TTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-AC-GACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGATACTAT-----------------------ATACG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----C-A-C--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAAT--CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACGTCCTATATGTATAAATGAAACAAGTAGGCCTAATTCAGCTTATTATGAAAGTTGAAAAAATGAAAAAAATCTTGGCGGTAA
Unaligned ( gi|20 ): AGTAATTCAGCTTACTATGAAAGTTGAAGAAATAAAAAAAATCTCGGCGGTAAATAGCCAATAACGTCCCTTGTTCTT
Unaligned ( gi|21 ): TAATTCAGCTTACTATGAAAGTTGAAAAAATGAAGGAAAAATATCGTCTGTAAATAGCCAATAACGTCCCTTGTTCT
Unaligned ( gi|23 ): TGTGTAAATGAAACAAGTAATTCAGCTTACTGTTGAAAAAATGGAAAAAAAA
Alignments
lowQualScore : 2222222222222222222222222222222222222222222 11111 1 11111111 3333333333 111111 3333333333333 111 11 3333333333333333333333333333 1111111 111 444 22 33333333333333 1 1 1 1 1 1 1 1 4444444444444 222 1 1 1 66666666666666666 1 1 1 1 1 1 1 1 2222 1 11 1 1 33333333 111 11 1 666666666666666666 11111111111111 22222222 888888888888888888888888888888888888888 111111 222222222 1 111 333333333 11111 22222 11 111 11 11 111 111111 11 11111 11111 111 1111111
lowQualScore : 9999999999999999999999999999999999999999999 66 5 888 5 5 22222 0 66 66 11111111 5 5 5 5 7777777777 666666 5 5555555555555 77 000 5 55 1111111111111111111111111111 5 1 0 5 4444444 111 8 8 111 00 55555555555555 5 333 3 3 3 3 3 7 3 3 3333333333333 111 5 22 5 1 5 00000000000000000 1 5 5 3 3 3 6 7 3 3 7 7 3 5555 3 88 0 3 7 3 6 99999999 0 444 6 33 6 7 6 1 1 6 6 666 5 5 5 0 5 5 66 5 5 555555555555555555 6 99 2 6 99999999999999 7 44444444 6 6 77 5 77 000000000000000000000000000000000000000 444444 5 5 888 666666666 0 5 5 77 4 4 9999 4 222 000000000 4 1 1 4 66666 777 4 66 66 11111 99 00 555 777 1 4 4 88 7 66 4 4 4 66 66 4 00 4 4 4 4 222 4 4 4 4 777777 66 4 66 4 22 99 0 77 22222 4 66 55 0 00000 444 4 55 55 888 55 3333333 4 7 7 3 55 4 4 777 4
lowQualScore : ........................................... .. . ... . . ..... . .. .. ........ . . . . .......... ...... . ............. .. ... . .. ............................ . . . . ....... ... . . ... .. .............. . ... . . . . . . . . ............. ... . .. . . . ................. . . . . . . . . . . . . . .... . .. . . . . . ........ . ... . .. . . . . . . . ... . . . . . . .. . . .................. . .. . . .............. . ........ . . .. . .. ....................................... ...... . . ... ......... . . . .. . . .... . ... ......... . . . . ..... ... . .. .. ..... .. .. ... ... . . . .. . .. . . . .. .. . .. . . . . ... . . . . ...... .. . .. . .. .. . .. ..... . .. .. . ..... ... . .. .. ... .. ....... . . . . .. . . ... .
lowQualScore : 1111111111111111111111111111111111111111111 99 0 888 0 0 55555 0 99 99 00000000 0 0 0 7 3333333333 444444 7 3333333333333 99 000 7 77 6666666666666666666666666666 7 7 1 7 7777777 888 0 8 777 00 22222222222222 0 000 3 3 3 3 3 3 3 3 7777777777777 000 0 00 0 0 5 55555555555555555 0 5 0 3 3 3 7 3 3 3 3 3 3 0000 3 33 7 3 3 3 5 88888888 2 888 5 88 0 5 7 0 7 7 7 888 7 7 7 0 0 0 99 0 7 333333333333333333 7 22 2 7 88888888888888 5 22222222 7 7 99 7 99 111111111111111111111111111111111111111 444444 0 0 888 999999999 0 0 0 99 4 4 4444 4 222 666666666 4 9 1 4 00000 888 4 11 11 77777 22 66 999 888 1 4 4 99 7 11 4 4 4 11 11 4 66 4 4 8 4 444 4 4 4 4 222222 11 4 11 4 22 77 1 00 22222 4 11 55 8 00000 444 0 55 55 000 55 0000000 0 3 3 6 77 0 0 000 0
consensus : CCCCCCCCCACT----T-CA-GTGT--------TCGAATGAC------------TTTTTTT--TT-TTT---TTTT-T-TT-----GC-T--G--TTCACA---A-A--A-T-TTTG-AA-GTT--T-G-----CC------CC-CCCAC-------CCCCCACTTT--CTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TCAA-A-----ATCCG-T-CCTA-CGNCTCTGTT---TGTAG-AGTA-ATT-AAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCT-AAGATGATATTCT-TTGAC-GAGAT--AAAT-AAAAC-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAA-TTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-A-CGACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGATA----------C---TA-TATA-CG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----C-A-C--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
Reference ( family-1761 ) : CCCCCCCCCACT----T-CA-GTGT--------TCGAATGAC------------TTTTTTT--TT-TTT---TTTT-T-TT-----GC-T--G--TTCACA---A-A--A-T-TTTG-AA-GTT--T-G-----CC------CC-CCCAC-------CCCTCACTTT--CTGT---GAT-T--TTT--T--AAG----T-T---CG---CC---C-CCCCCCCACTT-TCAA-A-----ATCCA-T-CCTA-CGNCTCTGTT---TGTAG-AGTA-ATT-AAAACTATAATGCACANNNTATA-TATTCTTACACGA-ACGGT-GCAG-CTCT-AAGATGATATTCT-TTGAC-GAGAT--AAAT-AAAAC-CGAGATTGCAAGGGAAAACGCGCTAGGTGTTNNTGANGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCNCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCGGT-TGT-TTTTTATTTC--TTCAAAGCGTG-CGAAAA-TTACCAGAATGAGCGGGATACTAGTA-----A--CCGG-A-CGACTA--TTTAAATAATTATGTAGT-AGGCCTTATNATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGATA----------C---TA-TATA-CG--ACCGATAA-T----A-AT------TNAAA--------AGATTA-TGTTTTT--TC-AATGT--CGCACT---------T---T-------CA----C-A-C--A----CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ACA-AATTCATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-TA-AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATC-A--ACAGA-TTCCGC-NAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AGGT---A-GGATTAGGA
gi|1 : CCCCCCCCACTATTTC-CATGTAT--------TCGAATTAC------------TTTTTTTAATT-TAT---TTAT-T-TT-----GC-T--G--TTGGCA---A-A--ACT-TTTG-ATTGTT--T-GGCACCCC------CC-CCCACGCACCGCCCCCCTTTTT--CTGT---GAC-T--TTT--T--AAAAATTT-T---CG---CC---C-CCCCCCC-TTT-TCAT-A-----ATTCG-TTCCTA-CG-CTCTGTTGC-TGTA--AGTACATTCAAAACTATAATG-ACAAGTTATA-TATTCATACACAT-ACGGTTGCAGTCTCT-A-GATGATATTCTCTTGGC-CGGAT-------------CGATAGTGCAAGG---AACGCGCTAGATGTTGGT-AGGATTCTGGATTCAGTTCTTCTCCAGCTATATATTTCCCCTTAATATTATACCAATGATTAACGATCTAATACACTAATCAAAACTTTAAAATACCCAGAGTTAAGTTGTGGTATTTACGA-TT-ATT-AATAAATCG-AATAGT-TGAGCCAGTATGTATTTTTATTTCTATTCAAATCGTG-CG--AA-TTACCAGAATGAGC-GGATACTAGTA-----A--CCGG-A-CGACTACTTTTAATTA--TATGT-GT-AGGCCTTATAA-TCTTAT-CAT-A-AATG-A-CGATAAC-GAAC-AATTATT-GATT--ACGCAAGTCCCTCTGCCTTC-GAGATTTGAT---------------TA-AATATCA--GGCTATAACT----A-AA------TTAAA--------AGATTA-T-TTTTT--TC-AATGTTCCGCACT---------TCC-T-------CACAGGC-A-C--A----CATT------TCGTTTTC-C---GAGGATAA-----TATAGC---------GCAATACAATTCATACTGG-AAACTGCC-GATTT--CCGATTTCACAC-TTTTCC-AAATTC-ATATTGTTTG-----AG-C--A---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATC-AA--GGATAACT-CA---AA-CT-G-TA-AAAATAT-TA--TC-TGGGTTG-T--T--GCCCGCC--A-AAAGT-A-T-TA-T-TTTT-GC-TAAA-G-TTATCG-AAAT-----TTTGGCGTTT-CAA--ATC-A--ACAGG-ATTCGC-GAAA--C--AA-C--CC---ACTTTGGAGCACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTCTTTGTGAGGTATGA-GGATTGG
gi|10 : CCCTCCCCCACTGTT-T-TA-GTGT--------TCAAATGCC------------TTTTTTT--TT-TTT---GCTT-T-TT-----GCAC--G--TCTAAA---A-T--A-T-TTTG-AG-CTT--T-GTTGCTCC------CC-CCCACG------CTCCCACTTT--CTGTAAGGAT-TAATTG--A--AAG----TAT---TG----C---C-CACACCCACTT-TCGA-AAAAATATACA-G-CCTA-CGACTCTGTTTAATGTAGAAGTA-TTT-AAAAattaccgtcctttatgtgtatatgatgaactagtaattcagccttatgataagttgacaaaaataaaaaaatcccggcgggtaaatacccaataacgtcccttgtt
gi|11 : CCCCTCCCTACC----T-CA-GTGTACTTTCTTTC--AT--C------------CTTTTTT--TC-TTT---TTTT-T-TTGGCGCGT-T--G--TGCACA---G-A--A-TGTTTGAAA-GTT--TGG-----CC------CC-CCCCC-------ACCTCAC-CT--CTGT---GAT-T--TTTAAG--AAG----T-TATCCG---CC---CACTCCCCTAC-T-TCAA-A-----ATCAA-T-CTTAGCGCCTCTGacaacatcaacgatggca
gi|12 : A--ACTTTGACACACC-----T-C-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-------------------TGT-AGGT---A-GGATTAGGAagatgagtttac
gi|13 : CCCCCCCACACA----T-TA-GTGA--------ACAAATGCC------------TCTTTTT--TT-TTT---TTTT-T-TG-----TT-T--GGCTTCACAAATA-A--A-T-TTTG-AA-GTT----------CC------CCACCCAC-------------CTTT--CTGT---AATATTATTT--T--AAA----G-T---CGTGACCCTAC-CCCCCCCACTT-TCAA-A-----ATCttacgtcctatatgtgtatatgaaataagtaattcagcttactatgaaagttgaaaaaataaaaataaaaatctcggcggtaaatagccaataacgtcccttgttc
gi|14 : cCCCCCCCC--------T-CA-GT-T--------TCAAA-GAC------------TTTTTTT--TT-TTTCTGTTTTAT-TT-----GC-T--G--CTCACA---ACA--A-T-TTTG--A-GTC--T-C-----CC------CC-CCCCC-------CCCT---TTC--CCGT----AT-T--TTT--T--A-------------G---TC---C-CCTTCCCTCCT-TCAACA-----ATCCAGT-CCTA-CCGCTCTGag
gi|15 : A-TTAC-GTCCAT-TTTC-TTGT-A-GT---A--GATTGGGA
gi|16 : ------------TTTTTTT--TT-TTT---TTTT-T-TT-----GC-T--A--GTCACA---T-AGCA-T-TTTG-AA-GTCTAT-G-----CCATGCCACC-CCCAC-------CCCCCACTTT--CTGT---GAT-T--TTT--TGAAAG----T------G---CT---G-GCCCCCCAATTCTCAA-A-----ATCttacgtcctatatgtgtatatgaaataagtaatcagcttactatgaaagttgaaaaaatataaaatctggcggtaaatagccataacgtcttgtt
gi|17 : actttttCGGGATACTAGTACTGTAA--CCCGTG-CGACTA--TTTAAATAATTATGTAGTTA---TTTATCATTTTTAT-CA-AA-AATG-A-CGAT-AA-GAAC-AATGA-T-GA-T--ACGCAAGTCACTCTG-Ca
gi|19 : CCCCTCCCCACT----TTCA-GTGT--------ACAAA-GACCCCTTTTTTTTGTTTTTTT--TTGTTT---TTTT-T-TT-----GCTT--G--TTCACA---A-A--A-T-TTTG-A
gi|2 : ccCCCCCTTCCACT-------A-GTCA--------TCGAATGAC------------CTTTT--------TT---TTTT-TGTT-----GC-TTAG--TCGAC----A-A--A-T-TTTG-AA-GTG--T-G-----CC------CC-CCCGC-----------CACTTTCCCTGT---GAC-T--TTT--T--AAG----T-T---TG---CC---C-TCCTCCCACTT-ACAA-T-----ATCCG-T-CCTA-AGCCTCTGCT---TGTAG-AGTA-AT-----------ATGCACATTATATA-TATTCTTACACGAGACGTG-GCAG-CTCTAAAGATGATATTCT-TTGACGGAGAT--AAATAAAAAC-TGAGATTGCAAAGGAAAAC-CGCTAAGTGTTCTTGACGA-TCTGGATTCAGT-----------------TTTCGCC-TAATATTATA-CAATGATTAACGATCTAATACACTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTACGATTT-ATT-AATAAATCGAAATAGC-TGAGCCAAT-TGT-TTTTTATTTC--TTCAAAGTGTG-CGAAAA-TTACCAGAATGAGCAGGATACTAGTA-----AT-CCGG-ACCAACTA--TTTAAATAATTATGTAGT-AGGCCTTATAATTTTTAT-CATAA-AATG-A-CGAT-AC-GAAC-AATGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGATTTGATA---------------A-TATA-CG--ACTGATAA-T----A-AT------TAAAA--------AGATGA-T-TTTTT--TC-TATGT--CGCACT---------T---T-------------------------CATT------TCG-TTTC-CAGGGAGGATAA---ATTATAGC---------GC-ATA-AATTTATACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACACCA-TA--T--TGATATT---GAAG-AAA--G--AA-----TATCAAA--GGATAA-T-CA---AACCT-G-T--AAAATATATA--TC-T-GGTTG-T--T--GCCCG-C--A-AAAGT-ATT-TA-T-TTTT-GC-TAAA-GTTTATCT-ATATTTCATTTTGGC--TT-CAA--ATT-A--ACAGA-TTCCAC-TAAA--C--AA-C--CCA--ACTTTGACGCACC-----T-T-CAC-GCCACGACTCAT---AAT---AA-------A-CA-TTACGGTC-CTCTTTC-TTGT-AGGT---A-GAATTAGGA
gi|22 : TATAATATTCTTACACGA-ACGGT-ACTG-CTCT-AAGATGATATTTT-TTGAC-GAGATAGAAAT-AAAACTCGAGATT
gi|24 : tGATAA---ATTATAGC---------GC-ATA-AATTCATGCTGGGAAACTGCC-GAT
gi|25 : TGA-T-GA-T--ACGCAAGTCCCTCTG-CTGT-GAGACTTGATA----------
gi|26 : ---T-------CA----C-AGC--AA---CATA------TCG-TTTC-CAGGGAGGAacat
gi|3 : tcaCTAATCAAAACTTTTAAATA-CCAGAG-TAAGTTGTGGT-TTTAC-ATTTAATTAAATAAATCGAA--AGCGTGAGCCG---TGT-TTTTTATTTC--TTCAAAGTGTGTCGAAAATTTAACAGAATGTGCGGGATGCTAGTA-----AACCCAA-A-C--------CTAA-----TATGTAGT-AGGCCTTATAATTTTTATGCATAAGAATGAA-CGAT-ACAAAACGAATGA-T-TA-T--ACGCAAGT-CCTCT--CTGT-GAGATTTGATA----------CGTGTAGCATA-CGGAGCCAAT-A-T----AGAT------TTAAA--------AGATTAGTGTTTTT--TC-AATGT--CGCACT---------T---TG------CA----TAA-C--AGCAGCATT------TCG-TTTC-CAGG--AGATGA---AATATAATTA-------GCAACA-AATTCATACTAGAAAACTGAA-CATTT--CCGTATTCACACTTTTTCCAAAATTC-ATATTGTTTG----CAG-CCAA---CA---------ACCCAACACCA-TA-----TGATATT---GAAG-AAAAGG--AAG----TATCAAAAGGGATAA---CA---AACCTCG-TA-AAAATATATAATTCTT-GGTTG-T--T--G-CCG-CCAA-AAAGTAAAT-TA---TTTT-GC-TAAA-GTTTA-CT-ATA------TTTGGC---T-CAA--ATCAA--ACAGATTTCCGCGAAAA--A--AA-C--CCATCACTTTGACGCACC-----TGC-CAC-G--AC---TCAT---AAT--AAA-------A-CA-TTAC-GTC-A--TTTC-TTGT-AGGT---A-GGATTAG
gi|4 : T-AA-GAAC-AATGA-TTGA-T--ACGCAAGTC--TCTG-CTGTTGAGATTTGATATATCGTAATGC---CA-TATA-CG--ACAAATAA-T----G-AT------TAAAA--------AGATTA-TGTTTTT--TCCGATGT--CACACTGTTCTGCCAT---T-------CA----C-A-C--G----CACTATTTGTTCG-TTCCTCAGGCGGCATGCGGCATT-TAGTAAAGGACTGGC-ACA-AAT-CATACTGGACAGCTGCCCGATTTAGCGGTATTCACAC-TTTTCCAAAATTCTATATTGGTTGATGGCAG-CCAAA--CA---------A-C-AACACCAGTAG-T--TGA-ATT---GA-G-AAA--G--A------TATCAAAA-GGATAA-T-CA---AACCT-GGTA-AAAATATTTA--TT-C-TGTTG-T--T--GCCCG-C--AGAAAGT-ATG-TA-TGTTTT-GC-TAAA-GTTTATCTGATA------TTTG-C--TT-CAATAATC-A--ACAGA-TTCCGC-GAAA--C--AA-CGTCCA--AC-TTGACGCACC-----T-CTCAC-G--ACG--TCATAG-AAT--AAA-------A-CATTTACTGTC-AT-TTTC-TTGT-AGGT---GTAGATTAGatacgtcctatatgtgtatatgaaataataattcacttactatgaaagttaaaataaaaaatctcggcggtaaatgagccacaataacgtcccttgttcc
gi|5 : TTAAATAATTATGTAGT-AGGCCTCATCACTTTTAT-CATAA-AATG-ACCTAT-AC--AAC-AATGATT-GA-TAAACGCAAGTCCTTCTG-CTGT-GAGATTTGATA----------CATTTAGCATA-CG--ACCAATAA-T----A-AT------T-AAA--------AGATTA-TGTTTTT--TC-ATTGT--CGCACT---------TGCAT-------CA----C-A-CTAA----CATT------TTG--TTC-TAGGGAGGATAA---ATTATAAC---------GC-ACA-AA-TCATACTGGAAAACTGCC-GATGT--CCGTATTCA-AC--TTTCCAAAATTC-ATAGTGTTTT----CA--CCAA---CA---------A-CCAACAC---TA--T--TGATATT---GAAG-AAA--G--AA-----TATACAA--GGATAA-T-CA---AA-CT-G-TA-AA---ATATA--TC-T-GGTTGCT--T--ACCCG-C--A-AAAGT-ATT-TA---TTTT-GC-TAAA-GTTTATCT-ATA------TTT-----------------------------CGC-GAAA--CCAAA-C--CCA--AC-TTGACGCACC-----T-C-CACAG--ACG--TCAT---GATAAAAA-------A-CA--TAC-GTC-AT-TTTC-TTGT-AGG----A-GGATAAGattacgtgctatgatgtgtatatgaaatagtaatgtcagcttactatgcaagttggaaaaattaaaaaagaaatctcggcggtaaatagccaataacggtccttgttct
gi|6 : TATTTGTATACT-AGGCCTTACCATGTTTAT-CATAA-AATG-G-TGAT-TC-GAAC-AATGA-T-AA-T--ACGCAAGCCCCTCAG-CTGT-GAAATTTGATA---------------A-TATG-TG--ATCGATAA-TTACAA-ATATTATGTGAAATCTTACCCATGGTA-TGTTTTTCTTT-AATGT--TGCACT---------T---TGTATCACCA----C-A----A----CAAT------TCG-TTTC-CAGGGAGAATAA---ATTATAAC---------GC-ACA-AATTCACACTGGAAAACTGCC-GATTT--CCGTATTCACAC-TTTTCCAAAATTC-ATATTGTTTG----GAG-CCAA---CA---------A-CCCACACCG-TA--A--TGATATT---GAAG---A--G--CATT---TTTTAAA--GGATAA-T-CA---AACCT-G-T--AAACTATAAA--TA-T-GGTTA-C--T--GTGCG-C--A-AAAGT-GTT-TA-C-TTTT-GC-TAAA-GTTTATCT-ATA------TTTGGC--TT-CAA--ATT-A--ACAG--TT--------------AA-C--CAA--ACTTTGACGCACC-----T-C-TAC-G--ACG--TCAT---AAT--AAA-------A-TA-TTAC-GTA-AT-ATTattacgtcctatatgtagtatatgaaataaagtatttacagctttacttattggaagttgaaaaaaattaaaaaaaaattcggcggtaaataacctataacgtcccttgttct
gi|7 : tgtagtTTTCT--TC-AATGT--CGCACT---------T---TT------CAT---C-A-C--AGTAATATT------TCG-TTTC-CAGGGAGGATAA---ATTAAAAC---------GC-AAA-AATTCCTACTGGAAAACAGCC-GATTT--CCGCACTCACAC-TTTTCAAAATTTC-ATATTGTTTG----CAG-CCAA---CA---------A-CCAACATCA-TA--T--TGATATT---GAAGAAAA--A--AA-----TATTAAA--GGATAACC-CA---AACCT-G-T--AAAATATAAA--TC-T-GGTTG-T--T--GTGCG-C--A-AAAGT-G-T-TA-T-CTTT-GC-TAAA-GTTAATCT-ATA------ATTGGG--TT-CAA--ACC-A--ACAGA-TTCGGC-TAAA--C--AA-C--CCA--ACTTTGACGCACCTTAAAT-T-CAC-G--ACG--TCAT---AAT--AAA-------A-CA-TTAC-GTC-AT-TTTC-TTGT-AAGT---A-GGATTAGGAacgtcctatatgtgta
gi|8 : CAC-TTTTCCAAAATTC-ATATTGTTTG----CAGACCAACTTCACTCATT---A-CCGAC-CAA-TATCT--TGATTTTTTGAAAG-AAA--GTAGA-----TAT--AT--AGATAA-TCCA---AACCT-T-T--AAAATATTTA--TC-T-GGTTG-TTAT--GCCGG-CA-A-AAAGT-ATTGTATT-TTTT-GCTTAAA-GTTTATCT-ACA------TTTGGC--TTCCAA--ATC-AACACAGA-TTCCGC-TAAAACC--AACC--CCA--ACTTTGACGCACC-----T-T-CGT----ACG--TCATAA-AAT--GAA-------ACCATTTAC-GTC-A--TTTC-TTGT-AGGT---G-GGATTAGGAttacgtcctatatgtacaaatgaaataagtaattcagcttacaatgaaagttgaaaaaatgaaaaaaaaaatattggcggctaatagccaataacgtcccttgttct
gi|9 : -TTTCTCAAAGTTC--TATTGTTTG----CAG-CCAA---CATCACTCATTA-CCGAC-CAA-TA--TCTTGAT-TT---AATG-AAA--G--AAATAGATAT-AAT--AGATAA-TTCATTCAACCT-G-TGTAAAATAT-TA--TC-T-GAGTG-T--TATGCCGG-C--A-AAAGT-ATT-TA-T-TTTTTGC-TAAAAGTTTATCT-ACA------TTTGGC--TT-CAA--ATC-AACACAGACTTCCGC-TAAAC-C--AA-C--CCA--ACTTTGACGCACC-----T-T---C-G--ACG--TCATAAAAAT--GAAACACATTA-CA-TTAC-GTC-AT-TTTC-TAGT-AGGT---G-GGATTAGGAttacgtcctattatgtataaatgaaacaagtaattccagcttactattgaaagtttgaaaaaattgaaaaaatattccggcggtaatagccaataacgtcctgtgtt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACGTCCTATATGTATAAATGAAACAAGTAGGCCTAATTCAGCTTATTATGAAAGTTGAAAAAATGAAAAAAATCTTGGCGGTAA
Unaligned ( gi|20 ): AGTAATTCAGCTTACTATGAAAGTTGAAGAAATAAAAAAAATCTCGGCGGTAAATAGCCAATAACGTCCCTTGTTCTT
Unaligned ( gi|21 ): TAATTCAGCTTACTATGAAAGTTGAAAAAATGAAGGAAAAATATCGTCTGTAAATAGCCAATAACGTCCCTTGTTCT
Unaligned ( gi|23 ): TGTGTAAATGAAACAAGTAATTCAGCTTACTGTTGAAAAAATGGAAAAAAAA