lowQualScore : 11111111111111111111111
lowQualScore : 555555555 11 1 44444444444444444444444 111 1111111 2222 2 44444444444 1 111 11 33333333 1111111111 1111111 1111111 11111111 9999999999999999999999999999 11111111 11111111
lowQualScore : 777 111111111 4 3 2 3 3 7 6 11 555 3 3 3 3 3 7 3 4 1 66666666666666666666666 3 55 3 3 7 0 55 666 4 8888 55 4 4 55 3333333 8 6666 4 2 0 999 4 4 6 11111111111 5 222 0 7 7 88 7777 3 3 55 3 11111111 3 55 3 3 0000000000 3 3 8888888 4 6 0000000 44 55555555 0000000000000000000000000000 3 44444444 33333333 4 4 99 4
lowQualScore : ... ......... . . . . . . . .. ... . . . . . . . . . ....................... . .. . . . . .. ... . .... .. . . .. ....... . .... . . . ... . . . ........... . ... . . . .. .... . . .. . ........ . .. . . .......... . . ....... . . ....... .. ........ ............................ . ........ ........ . . .. .
lowQualScore : 000 555555555 0 6 8 3 3 3 4 22 888 1 6 6 6 6 3 6 0 6 88888888888888888888888 6 00 6 6 3 8 55 555 0 5555 55 0 0 55 0000000 0 2222 0 5 7 000 0 7 2 99999999999 0 999 9 7 3 66 8888 6 6 00 6 99999999 6 00 6 6 0000000000 6 6 7777777 5 3 8888888 66 44444444 9999999999999999999999999999 9 55555555 11111111 0 0 55 4
consensus : CAGGGGTGGA---AATTT-A----G-GTAAATG-TCT-AAGGAG-CCAAA-CGGGCTCCT--AGC---ATCAAA-AT-TTTAGGAG-CCC-GGATTG-AAAA-TCATG-GGCCCGCCCCG-AAT-TAA-------A--TTGT-GACAA--TTTT-G-C-TATTT--C---TT-C----T--TT-CAT-T--ATT-------TGT-ATC--CATTC-AATTTCTGTTTCAATT-TCCACTTTCAA--CAGCTA-C-TCTTCTCATATGA-CCCTTCTTCCGCCAAT-AA-ATC-G--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-TC-AAAATCACCA----T-----T-GC-AA--T---ATANTNT-------T--T--------TTT------------G---G-TA--------ATCTT--------TTTT-----A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
Reference ( gi|2 ) : CAGGGGTGGA---AA----A----G-GTAAATG-TCT-AAGGAG-CCAAA-CAGGCTCCT--AGC---ATAAAA-AT-TTTAGGAG-CCC-AGATTG-AAAA-TCATG-GGCCCGCCCCGTAATTTAAGTAAT-TAGTTTGT-GACAA--TTTT-G-C-TATTT--C---TT-C----T--TT-CAT-T--ATT-------TGT-ATC--CATTC-AATGTCTGTTTCAATT-TCCACTTTCAA--CAGCTA-C-TCTTCTCATATGA-CCCTTCTTCCTCCAAT-AC-ATC-A--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-TC-AAAATCACCA----T-----T-GC-AA--T--CATAATAT-------T--T--------TTT------------A---A--A--------ATCTT--------TTTT-----A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
gi|17 : CAGAGGTGGA---AATTT-A----G-GTAAATG-TCT-AAGGAG-C
gi|7 : AGGGGTGGA---AATTT-A----G-GTAAATG-TCT-AAGGAG-CCAAA-CGGGCTCCT--AGC---ATCAAA-AT-TTTAGGAG-CCC-GGATTG-AAAA-TCATG-GGCCCGCTCTGTAATTCAAA---------TTGT-GACAA--TTTT-G-C-TA-----C---TT-C----T--TT-CAT-T--ATT-------TGT-AT---CATTC-AATTTCTGTT----------------GA--TAGC-A-----TTCTCATATGA-CCCTTCTTCTGCCAAT-AA-ATC-G--CT-CT-CCA--ATTCA-TC---------CT-CTC--CGTT-TC--AAATCACTA----T-----T-GC-A-------ATAGTAT-------T--T--------TTA------------A---A--AAAAACAACATTTTATGGCTAATTTTTTAAAA--TTGGT-TATTGCC-TTCTT--GTA-GCCACTGA
gi|5 : AGGGGTGGA---AA----ATTTAG-GTAA-TG-T-T-AAGGAGGCCAAA-CGGGCTCTT--AGC---ATCAAA-AT-TTTAGGAGGCCC-AGATTG-AAAA-TCATGGGAACCG-CCCA--------------------------AA--TTTT-GGC-TATTT--C---TTTC----T--TT-CAT-T--ATT-------TGT-ATC---ATTA-AAT-TCTGTTTCAATT-TCCACTT-CAA---GGC-A-C-TCTT-TCATAT-A-CAC--CTTCCTCCAAT-A--ATC-A--CT-AT-CTG--ATTCA-TCTCTCTCTCTTT-CTT--CGTTATC-AAAATCACCA----TATGATT-GC-AAAAT--CGTGATTT-------T--T--------TTTTTTT--------G---GTTA--------ATCTT--------TTTT-----A--TTGGT-TTTGAAC-TTCTT--GTA-GCCACT
gi|3 : AGGGGTGGA---AATTT-A----G-GTAAATG-TCT-ATGAAG-CCAAAACGGGCTCCTT-AGCCCCATCAAA-ATCTTTAGGAG-CCC-GGATTG-AAAG--CATG-G-CCCGCTCTGTAATC----------AATTTGT-GACAA--TTTT-G-CCTATT---C---TT-C----T--TT-CATCT--ATT-------TTT-GTTATCATTC-AATTTCTATTTACCCT-TTCACTTTC----TTGC---C-TCTTCAC-TATGAACCCTTCTTCCGCCA-T-AA-ATTTG--CT-AT-CCG--ATTCA-TC----------T-CTC--CGTT-TCCAAAATCACCA----T-----T-GC-AA--T---A-AGTAT-------T--T--------TTTCTTTTTTGCGCTA---A--A--------AC--T--------TTTA-----A--TTGGT-TTTTGCC-TTCCTCCATA-GCCACTGA
gi|16 : AGGGGTGGA---AATTT-A----G-GTAAATG-TCTTAAGGAG-CCAAA-CGGGCTTCC--AGC---Aa
gi|8 : GGGGTGGA---AATTT-A----G-GTAAATG-TAT-AAGGAG-CCAAA-CGGGCTCCT--AGC---ATCAAA-AT-TTT-GGAG-CCC-AGATTG-AAAA-TCATG-GGCC-----CGCAAC-----------------------A--TTTT-G-CCTATTT--CC--TT-C----T--TT-CAT-T--ATT-------TGT-ATC---ATTC-AAT-----------TT-TCCACTTCCAAG-CA-CTAGC-TCTT-TCATAT-A-CCCTTCTTC-TCCAAT-AA-ATC-A--CT-AT-CTG--ATTCA-TT-CTCACTCTCT-CTC--CGTT-TC-TAAATCACCAATAGT-----T-GT-TT--T--TTTTTTTTTTTTTTTT--T--------TTT------------G---GTTA--------ATC-T--------TTTT-----A--TTGGT-TTTTGCT-TTCCT--GTATGCCACTGA
gi|6 : GGGGTGGA---AATTAAA----G-GTAAAT---TT-AAGGAG-CCAA--CGGGCTCCT--AGC---AGCAAA-AT-TTTAGGAG-CCC-A-ATTG-AAAAATCCTG-G-CCCGCC-----------GAAAT-TA----------------TT-G-C-TATTTTTC---TT-C----T--TT-CAT-T--ATT-------TGT-ACT--CATTC-AAT-TTTGTTTC-ATT-TCCAC-TTCAAAGCA-CTA-CATCTT-TCATAT-A-CCCTTCTTCC-CCAAT-AA-AT--A--CTAAT-CTGAAATTCAGTC-TGCACTCTCT-CTC--TAT--------AT--------------------AA--T---ATAAT-T-------T--T--------GTT-------------------------------TT--------TTTT-----T--TTTGT-TTTTGTT-TTTTT--G
gi|4 : GGGTGGA---AATTT-A----G-GTAAATG-TCT-GAGGAG-CCAAA-CAGTGTCCT--AGC---ATTAAA-AT-TCTAGGAG-TCC-AGATTG-AAAA-TCACG-GGCCCGA-----AATCTA--------AGTTTGT-GACAG----TT-G-C-AATTT--TAAATT-TGAAATTATT-CAT-T--ATTATGTACATGT-AT---CATTC-AATTTCTGTTTCAATT-TCCAC-TTCA----AGC-A-C-TCTT-TCATATAC-CCCTTCTTCTTCCAAT-AA-ATC-A--CT-AT-TTG--ACTCA-TC-CTCCCTCTCT-CT----GTT-TC-AAAATCACCT----T-----T-GC-AA--T--CGTATTGG-------TGGTGGGGGGGGGTT------------G---A--A--------CTTTT--------TTTT-----A--TTGGT-TTTTGCC-TTCTA--GTA-agttaatcttttttattggttttgctttcctgtagccact
gi|10 : aGGGTGAATTTAA----G----G-TTAAATGGTCT-AAGGAG-C--AA-C-GGCTCCT--AGC---AT-CAA-GT-TTTAGGAG-CCC-CGATTGAAAAA-TCAGG-GGCCCACC---------AAG---------TTGTGGACAA--TTTT-G-C-TATTT--C---TT-A----T--TTACAG-TAGATT-------TGTAATC--AATTCGAATTTC-GTTAAAATTGTCCAACTTCAA--GA--------CCTCTCAT--------------CCGCAATAAA-ATC-G--CT-ATATCG--ATTCA-CC-ATCGTCATCTGCTCAGCGGT-TC-AAAACGAGCT----T-----C-GC-AA--T--AAGTATAT-------T--T--------Tt
gi|1 : cGGTGGA---AA----A----GCGTAA-TG-TCT-AAG-AG-CCAAAACAGGCTCCTC-AGC---ATAAAA-AT-TTTAGGAG-CCC-AGATTGAAAAA-TCATG-GGCCCG-CCCGTAATTTAAGTAATGTAG-TTGT-GATAAATTTTT-G-C-TA-TT--C---TT-C----T--TT-CAT-T--ATT-------TGT-AT---CATTC-AATGTCTGTTTCAATT-TCCACTTTCAA---AGCTA-C-TCTTCTCATA-GA-CGCAT-TTTCTCCAATAACGATC-AACTT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-TC-AAAATCACCA----T-----TAGCAAA--T--CATAATAT-------T--TA-------TTTTAAA--------A---A--A--------ATCTT--------TTTT-----AT-TTGGTCTTTTGCCTTTCTTG-GTA-GTCGC
gi|12 : ATG-T-T-CAGG-G-CCAAA-TGGGCTCCCCAAGT---CTAAAA--T-TTTAAGCA-TCC-ACATTG-AAGA-TAATT-AGCCCAC------ATTTATCTAAA-T------T-GAC-A--TTTT-G-C-Tac
gi|15 : -AAGGAG-CCAAA-CGGGCTCCT--AGC---ATCAAA-AC-TTTAGGAG-CCC-GAATTG-AAAA-
gi|9 : --AGC---ATCAAATAT-TTTAG-AG-CCTTGGATTG-AAAA-TCATG-GGCCTGTTCTGCAATATCA-------AATTTGT-GACAA--TTTTTG-C-TATTT--TCT-TT-C----T--TT-CAT-T--ATT-------TGTTATC---ATTT-AATTTCTGTTT-AATT-TCTACTTCTAG--CA-CTA-C-TC-----ATATGAACCCTTCTTCCGCCAAT-AA-ATC-G--CT-AT-CCG--ATTCA-TT-C-------CT-CTC--CGTT-TC-AAAATCACCA----T-----T-AC-AA--T--AGTATTTT-------T--T--------TTT------------TTCTA--ATTTGCCTTATTTT--------TTTT-----A--TGGGG-TGTTGCC-TTCTT--GTA-ACCACTGA
gi|11 : GTTTGT-GACAA--TTTT-G-C-TATTT--C---TT-C----T--TT-CAT-T--ATT-------TGT-ATC---------AT-------TCAATT-TCCACTT-CAA----GC-A-C-TCT---CATATGA-TCCTTCTTCTGCCAAT-AA-ATC-G--CT-AT-TAC--ATTCA-TC----------T-CTC----TT-TC-AAAATCACCA----T-----T-GC-AA--TAGTATATTTT-------T--T--------TTT------------G---GCTA--------ATCTT--------TTTT-----A--TTGGT-TTTTGCC-TTCTC--GTA-GCCACTGAa
gi|13 : TCATCCGCCAAT-AA-ATC-G--CT-AT-TCG--ATTCA-TC----ACTCTCT-CTC--CGTT-TC-AAAATCACTA----T-----C-GC-A-------ATAGTAT-------T--T--------TTT------------a
gi|14 : tcT-------T--T--------TTT------------G---GCTA--------ATTTT--------TTTT-----AAATTGGT-TTTTGCC-TTCTC--ATA-GCCACTGAttggttaatcttt
Alignments
lowQualScore : 6666666666666666666666666666666666 1111 1111111 2222 44444444444444444 22222222 1111111111 5555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : 3 3 3 55 3 55 3 3 3 3 77 555 3 3 3 3 77 6 3 1 3 9999999999999999999999999999999999 6 3 3 44 3 6 55 3 6666 7777 3 3 3 55 1111111 7 2222 3 777 3 3 4 11111111111111111 88 3 8 3 44 3 44 3 3 44 3 11111111 3 44 3 3 2222222222 3 44 9999999999999999999999999999999999999999999999999999999999999999999999999 44 888888 3 3 77 3
lowQualScore : . . . .. . .. . . . . .. ... . . . . .. . . . . .................................. . . . .. . . .. . .... .... . . . .. ....... . .... . ... . . . ................. .. . . . .. . .. . . .. . ........ . .. . . .......... . .. ......................................................................... .. ...... . . .. .
lowQualScore : 6 6 6 00 3 11 1 3 3 3 33 444 3 3 3 3 66 7 3 4 6 9999999999999999999999999999999999 7 3 2 66 3 7 00 6 4444 7777 6 6 6 00 8888888 3 0000 6 888 6 5 8 00000000000000000 77 6 8 3 66 3 66 3 3 66 3 66666666 3 66 3 3 7777777777 3 66 2222222222222222222222222222222222222222222222222222222222222222222222222 22 888888 3 3 99 6
consensus : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCCCCG----------A-AT-T-AAA---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAA--AG--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----A----TT-GCAA--T-AG--T----A---TT--------TTT-------------T-TT--T------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
Reference ( family-1743 ) : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCCCCG----------A-AT-T-AAA---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAA-CAG--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----A----TT-GCAA--T-A---T----A---NT--------NTT-------------T-TT--T------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
gi|1 : GGTGG-AAA---A-GCG--TAA-TG-TC-TAAG-A-GCC-AAAACAGGCTCC-TC-AG---CATA-AAA-AT-TTTAGGA-GCCC-AGATTG-AAAAATCATGGG-CCCGCCCGT----------A-AT-T-TAAGTAATGTAGTT-GT-GATAAATTTTT-G-CTA--TT--C----TT----CT-TT-CAT-T--ATT-------TGT-AT--C-ATTC-AATGTCTGTTTCAATT-TCCACTTTCAA--AG--CTA-C-TCTTCTCATA-G-A-CGCATTTTCT-CCAAT-AACGA-TCAACTT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----A----TTAGCAAATC-A---T----A---AT--------ATT-------------TATT--TTAA---AA-------AA---------A--TCTTTTTT---AT-TTGGTCTTTTGCCTTTCTTG-GTA-GTCGC
gi|10 : GGGTG---AATTTA-A-GGTTAAATGGTC-TAAGGA-GC---AA-CGG-CTCC-T--AG---CATC--AA-GT-TTTAGGA-GCCC-CGATTGAAAAA-TCAGGGG-CCCACC--------------------AAG---------TT-GTGGACAA--TTTT-G-CTA--TTT-C----TT----AT-TTACAG-TAGATT-------TGTAAT--CAATTCGAATTTC-GTTAAAATTGTCCAACTTCAA-----------------------G-A-CCTCTCATCCG-CAATAAA--A-TCG--CT-ATATCG--ATTCA-CC-ATCGTCATCTGCTCAGCGGT-T-CAAAACGAGC-----T----TC-GCAA--T-A--------A---GT--------ATA-------------T-TT--T------ac
gi|11 : c---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--C-------ATT-------CAATT-TCCACTT-CAA---G--C-A-C-TCT---CATATG-A-TCCTTCTTCTGCCAAT-AA--A-TCG--CT-AT-TAC--ATTCA-TC----------T-CTC----TT-T-CAAAATCACC-----A----TT-GCAA--T-AGTAT----A---TT--------TTT-------------T-TT--T------GGC------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTC--GTA-GCCACTGA
gi|12 : gtATG-T--TCAGG--GCC-AAA-TGGGCTCC-CCAAG-----TCTAAA-AT-TTTAAGC-ATCC-ACATTG-AAGA-TAATTAG-CCCACATTT----------A-TC-T-AAA---------T---T-GAC-A--TTTT-G-CTa
gi|13 : TCATCCGCCAAT-AA--A-TCG--CT-AT-TCG--ATTCA-TC----ACTCTCT-CTC--CGTT-T-CAAAATCACT-----A----TC-GCAA--T-AG--T----A---TT--------TTT-------------T-TT--G------GT-------TA---------A--TCTTT
gi|14 : tcT--------TTT-------------T-TT--T------GGC------TA---------A--TTTTTTTT---AAATTGGT-TTTTGCC-TTCTC--ATA-GCCACTGA
gi|15 : tAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AC-TTTAGGA-GCCC-GAATTG-AAAA-at
gi|16 : AGGGGTGG-AAATTTA-G-G--TAAATG-TCTTAAGGA-GCC-AAA-CGGGCTTC-C--AG---CA
gi|17 : CAGAGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GC
gi|2 : CAGGGGTGG-AAA---A-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CAGGCTCC-T--AG---CATA-AAA-AT-TTTAGGA-GCCC-AGATTG-AAAA-TCATGGG-CCCGCCCCGTAATTTAAGTA-AT-T-AGT---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATGTCTGTTTCAATT-TCCACTTTCAA-CAG--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCTCCAAT-AC--A-TCA--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----A----TT-GCAA--TCA---T----A---AT--------ATT-------------T-TT--T------AA--------A---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
gi|3 : AGGGGTGG-AAATTTA-G-G--TAAATG-TC-TATGAA-GCCAAAA-CGGGCTCCTT--AGCCCCATC-AAA-ATCTTTAGGA-GCCC-GGATTG-AAAG--CAT-GG-CCCGCTCTGT---------A-AT-C-AAT---------TT-GT-GACAA--TTTT-GCCTA---TT-C----TT----CT-TT-CATCT--ATT-------TTT-GTTATCATTC-AATTTCTATTTACCCT-TTCACTTTC---TTG--C---C-TCTTCAC-TATGAA-CCCTTCTTCCGCC-AT-AA--ATTTG--CT-AT-CCG--ATTCA-----------TCT-CTC--CGTT-TCCAAAATCACC-----A----TT-GCAA--T-AAG-T----A---TT--------TTT-------------T-CT--TTTTTGCGC-------TA---------A--AACTTTTA---A--TTGGT-TTTTGCC-TTCCTCCATA-GCCACTGA
gi|4 : GGGTGG-AAATTTA-G-G--TAAATG-TC-TGAGGA-GCC-AAA-CAGTGTCC-T--AG---CATT-AAA-AT-TCTAGGA-GTCC-AGATTG-AAAA-TCACGGG-CCCG----A----------A-ATCT-AAG---------TTTGT-GACAG--TT---G-CAA--TTT-TAAATTTGAAATTATT-CAT-T--ATTATGTACATGT-AT--C-ATTC-AATTTCTGTTTCAATT-TCCACTT-CAA---G--C-A-C-TCTT-TCATATA-C-CCCTTCTTCTTCCAAT-AA--A-TCA--CT-AT-TTG--ACTCA-TC-CTCCCTCTCT-CT----GTT-T-CAAAATCACC-----T----TT-GCAA--TCG---T----A---TT--------GGT-------------G-GT--G------GGGGGGGGTTG---------AACTTTTTTTT---A--TTGGT-TTTTGCC-TTCTA--GTA-a
gi|5 : aAGGGGTGGAAAATTTA-G-G--T-AATG-T--TAAGGAGGCC-AAA-CGGGCTCT-T--AG---CATC-AAA-AT-TTTAGGAGGCCC-AGATTG-AAAA-TCATGGGAACCGCCC-------------------AAA---------TT-TT-G-----------G-CTA--TTT-CT---TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTA-AA-TTCTGTTTCAATT-TCCAC-TTCAA--GG--C-A-C-TCTT-TCATAT--A-CAC--CTTCCTCCAAT--A--A-TCA--CT-AT-CTG--ATTCA-TCTCTCTCTCTTT-CTT--CGTTAT-CAAAATCACCATATGA----TT-GCAA--A-A---TCGTGATTTTT--------TTT-------------T-TT--T------GGT------TA---------A--TCTTTTTT---A--TTGGT-TTTGAAC-TTCTT--GTA-GCCACTt
gi|6 : GGGGTGG-AAATTAAAG-G--TAAAT---T-TAAGGA-GCC-AA--CGGGCTCC-T--AG---CAGC-AAA-AT-TTTAGGA-GCCC--AATTGAAAAA-TCCT-GG-CCCG--CCG-----------------AAA---------TT-A-----------TT-G-CTATTTTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AC--TCATTC-AATTT-TGTTTC-ATT-TCCAC-TTCAA--AGCACTA-CATCTT-TCATAT--A-CCCTTCTTCC-CCAAT-AA--A-T-A--CTAAT-CTGAAATTCAGTC-TGCACTCTCT-CTC--TAT--------AT-------------------AA--T-A---T----A---AT--------TTT-------------G-TT--T-------------------------------TTTTTT------TTTGT-TTTTGTT-TTTTT--G
gi|6 : TT-------------T-TT--T------GAGT-----TA---------A--TCTTTTTT---A--TTGG--TTTTGCT-TTCCT--GTA-GCCACTagttaatcttttttattggttttgctttcctgtagccact
gi|7 : ggggtggaaattaaaggtaaatttaaggagccaacgggctcctagcagcaaaattttaggagcccaattgaaaaatcctggcccgccgaaattattgctatttttcttctttcattatttgtactcattcaattttgtttcatttccacttcaaagcactacatctttcatatacccttcttccccaataaatactaatctgaaattcagtctgcactctctctctatataatataattttgttttttttttttgtttttgtAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCTCTGT---------A-AT-TCAAA---------TT-GT-GACAA--TTTT-G-CTA------C----TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTC-AATTTCTGTT----------------GA-TAG--C-A-----TTCTCATATG-A-CCCTTCTTCTGCCAAT-AA--A-TCG--CT-CT-CCA--ATTCA-TC---------CT-CTC--CGTT-T-C-AAATCACT-----A----TT-GCAA--T-AG--T----A---TT--------TTTAAAAAAAACAACAT-TTTAT------GGC------TA---------A----TTTTTTAAAA--TTGGT-TATTGCC-TTCTT--GTA-GCCACTGA
gi|8 : GGGGTGG-AAATTTA-G-G--TAAATG-TA-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTT-GGA-GCCC-AGATTG-AAAA-TCATGGG-CCCGC---------------------------------------AAC-A--TTTT-GCCTA--TTTCC----TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTC-AAT-----------TT-TCCACTTCCAAGCA---CTAGC-TCTT-TCATAT--A-CCCTTCTTCT-CCAAT-AA--A-TCA--CT-AT-CTG--ATTCA-TT-CTCACTCTCT-CTC--CGTT-T-CTAAATCACC-----AATAGTT-GTTT--T-T---T----T---TTTTTTTTTTTTT-------------T-TT--T------GGT------TA---------A--TC-TTTTT---A--TTGGT-TTTTGCT-TTCCT--GTATGCCACTGA
gi|9 : --AG---CATC-AAATAT-TTTAG-A-GCCTTGGATTG-AAAA-TCATGGG-CCTGTTCTGCA--------ATAT-C-AAA---------TTTGT-GACAA--TTTTTG-CTA--TTT-TCT--TT----CT-TT-CAT-T--ATT-------TGTTAT--C-ATTT-AATTTCTGTTT-AATT-TCTACTTCTAG-CA---CTA-C-TC-----ATATG-AACCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TT-C-------CT-CTC--CGTT-T-CAAAATCACC-----A----TT-ACAA--T-AG--T----AT--TT--------TTT-------------T-TT--T------TC-------TAATTTGCCTTA--TTTTTTTT---A--TGGGG-TGTTGCC-TTCTT--GTA-ACCACTGA
Alignments
lowQualScore : 6666666666666666666666666666666666 1111 1111111 2222 22222222222222222222 22222222 7777777777777777777777777777777777777777777777777777777777
lowQualScore : 3 3 3 55 3 55 3 3 3 3 77 555 3 3 3 3 77 6 3 1 3 9999999999999999999999999999999999 6 3 3 44 3 6 55 3 6666 7777 3 3 3 55 1111111 7 2222 3 777 3 3 33333333333333333333 88 3 8 3 44 3 44 3 3 44 3 11111111 3 44 3 3 88888 3 44 7777 6 3 9999 44 3 7777777777777777777777777777777777777777777777777777777777 44 666 88 3 3 88 3
lowQualScore : . . . .. . .. . . . . .. ... . . . . .. . . . . .................................. . . . .. . . .. . .... .... . . . .. ....... . .... . ... . . .................... .. . . . .. . .. . . .. . ........ . .. . . ..... . .. .... . . .... .. . .......................................................... .. ... .. . . .. .
lowQualScore : 6 6 6 00 3 11 1 3 3 3 33 444 3 3 3 3 66 7 3 4 6 9999999999999999999999999999999999 7 3 2 66 3 7 00 6 4444 7777 6 6 6 00 8888888 3 0000 6 000 6 5 22222222222222222222 77 6 8 3 66 3 66 3 3 66 3 66666666 3 66 3 3 33333 3 66 1111 7 3 6666 22 1 2222222222222222222222222222222222222222222222222222222222 66 444 66 6 6 66 6
consensus : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCCCCG----------A-AT-T-AAA---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAA-A-G--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----T--TT-TT---------------TTT--T-----------------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
Reference ( family-1743 ) : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCCCCG----------A-AT-T-AAA---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAA-A-G--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----T--TT-TT---------------TTT--T-----------------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
gi|1 : GGTGG-AAA---A-GCG--TAA-TG-TC-TAAG-A-GCC-AAAACAGGCTCC-TC-AG---CATA-AAA-AT-TTTAGGA-GCCC-AGATTG-AAAAATCATGGG-CCCGCCCGT----------A-AT-T-TAAGTAATGTAGTT-GT-GATAAATTTTT-G-CTA--TT--C----TT----CT-TT-CAT-T--ATT-------TGT-AT--C-ATTC-AATGTCTGTTTCAATT-TCCACTTTCAA-A-G--CTA-C-TCTTCTCATA-G-A-CGCATTTTCT-CCAAT-AACGA-TCAACTT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATTAGC--AAATCAT-AA-TA----T--TTATT---------------TTA--A-----------------AA-------AA---------A--TCTTTTTT---AT-TTGGTCTTTTGCCTTTCTTG-GTA-GTCGC
gi|10 : GGGTG---AATTTA-A-GGTTAAATGGTC-TAAGGA-GC---AA-CGG-CTCC-T--AG---CATC--AA-GT-TTTAGGA-GCCC-CGATTGAAAAA-TCAGGGG-CCCACC--------------------AAG---------TT-GTGGACAA--TTTT-G-CTA--TTT-C----TT----AT-TTACAG-TAGATT-------TGTAAT--CAATTCGAATTTC-GTTAAAATTGTCCAACTTCAA-----------------------G-A-CCTCTCATCCG-CAATAAA--A-TCG--CT-ATATCG--ATTCA-CC-ATCGTCATCTGCTCAGCGGT-T-CAAAACGAGC-----TTC-GC--A----ATAAG-TA----T--AT-TT---------------Tac
gi|11 : c---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--C-------ATT-------CAATT-TCCACTTC--A-A-G--C-A-C-TCT---CATATG-A-TCCTTCTTCTGCCAAT-AA--A-TCG--CT-AT-TAC--ATTCA-TC----------T-CTC----TT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----TATTT-TT---------------TTT--T-----------------GGC------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTC--GTA-GCCACTGA
gi|12 : gtATG-T--TCAGG--GCC-AAA-TGGGCTCC-CCAAG-----TCTAAA-AT-TTTAAGC-ATCC-ACATTG-AAGA-TAATTAG-CCCACATTT----------A-TC-T-AAA---------T---T-GAC-A--TTTT-G-CTa
gi|13 : TCATCCGCCAAT-AA--A-TCG--CT-AT-TCG--ATTCA-TC----ACTCTCT-CTC--CGTT-T-CAAAATCACT-----ATC-GC--A----AT-AG-TA----T--TT-TT---------------TTT--G-----------------GT-------TA---------A--TCTTT
gi|14 : tc----T--TT-TT---------------TTT--T-----------------GGC------TA---------A--TTTTTTTT---AAATTGGT-TTTTGCC-TTCTC--ATA-GCCACTGA
gi|15 : AAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AC-TTTAGGA-GCCC-GAATTG-AAAA-at
gi|16 : AGGGGTGG-AAATTTA-G-G--TAAATG-TCTTAAGGA-GCC-AAA-CGGGCTTC-C--AG---CA
gi|17 : CAGAGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GC
gi|2 : CAGGGGTGG-AAA---A-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CAGGCTCC-T--AG---CATA-AAA-AT-TTTAGGA-GCCC-AGATTG-AAAA-TCATGGG-CCCGCCCCGTAATTTAAGTA-AT-T-AGT---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATGTCTGTTTCAATT-TCCACTTTCAACA-G--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCTCCAAT-AC--A-TCA--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-CA-TA----A--TA-TT---------------TTT--T-----------------AA--------A---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
gi|3 : AGGGGTGG-AAATTTA-G-G--TAAATG-TC-TATGAA-GCCAAAA-CGGGCTCCTT--AGCCCCATC-AAA-ATCTTTAGGA-GCCC-GGATTG-AAAG--CAT-GG-CCCGCTCTGT---------A-AT-C-AAT---------TT-GT-GACAA--TTTT-GCCTA---TT-C----TT----CT-TT-CATCT--ATT-------TTT-GTTATCATTC-AATTTCTATTTACCCT-TTCACTTTC--------TTGCC-TCTTCAC-TATGAA-CCCTTCTTCCGCC-AT-AA--ATTTG--CT-AT-CCG--ATTCA-----------TCT-CTC--CGTT-TCCAAAATCACC-----ATT-GC--A----ATAAG-TA----T--TT-TT---------------TCT--TTTTTGC-----------GC-------TA---------A--AACTTTTA---A--TTGGT-TTTTGCC-TTCCTCCATA-GCCACTGA
gi|4 : GGGTGG-AAATTTA-G-G--TAAATG-TC-TGAGGA-GCC-AAA-CAGTGTCC-T--AG---CATT-AAA-AT-TCTAGGA-GTCC-AGATTG-AAAA-TCACGGG-CCCG----A----------A-ATCT-AAG---------TTTGT-GACAG--TT---G-CAA--TTT-TAAATTTGAAATTATT-CAT-T--ATTATGTACATGT-AT--C-ATTC-AATTTCTGTTTCAATT-TCCACTTC--A-A-G--C-A-C-TCTT-TCATATA-C-CCCTTCTTCTTCCAAT-AA--A-TCA--CT-AT-TTG--ACTCA-TC-CTCCCTCTCT-CT----GTT-T-CAAAATCACC-----TTT-GC--A----AT-CG-TA----T--TG-GT---------------GGT--G-----------------GGGGGGGGTTG---------AACTTTTTTTT---A--TTGGT-TTTTGCC-TTCTA--GTA-a
gi|5 : aAGGGGTGGAAAATTTA-G-G--T-AATG-T--TAAGGAGGCC-AAA-CGGGCTCT-T--AG---CATC-AAA-AT-TTTAGGAGGCCC-AGATTG-AAAA-TCATGGGAACCGCCC-------------------AAA---------TT-TT-G-----------G-CTA--TTT-CT---TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTA-AA-TTCTGTTTCAATT-TCCAC-TTCAA-G-G--C-A-C-TCTT-TCATAT--A-CAC--CTTCCTCCAAT--A--A-TCA--CT-AT-CTG--ATTCA-TCTCTCTCTCTTT-CTT--CGTTAT-CAAAATCACCATATGATT-GCAAA----AT-CG-TGATTTT--TT-TT---------------TTT--T-----------------GGT------TA---------A--TCTTTTTT---A--TTGGT-TTTGAAC-TTCTT--GTA-GCCACTt
gi|6 : GGGGTGG-AAATTAAAG-G--TAAAT---T-TAAGGA-GCC-AA--CGGGCTCC-T--AG---CAGC-AAA-AT-TTTAGGA-GCCC--AATTGAAAAA-TCCT-GG-CCCG--CCG-----------------AAA---------TT-A-----------TT-G-CTATTTTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AC--TCATTC-AATTT-TGTTTC-ATT-TCCAC-TTCAA-A-GCACTA-CATCTT-TCATAT--A-CCCTTCTTCC-CCAAT-AA--A-T-A--CTAAT-CTGAAATTCAGTC-TGCACTCTCT-CTC--TAT-----ATAAT-ATA-----ATT-----------T-TG-TT----T--TT-TT---------------TTT--TTGTTTTTGTTTTTTTGAGT-------TA---------A--TCTTTTTT---A--TTGG--TTTTGCT-TTCCT--GTA-GCCACT
gi|7 : AGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCTCTGT---------A-AT-TCAAA---------TT-GT-GACAA--TTTT-G-CTA------C----TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTC-AATTTCTGTT--GAT--------------A-G--C-A-----TTCTCATATG-A-CCCTTCTTCTGCCAAT-AA--A-TCG--CT-CT-CCA--ATTCA-TC---------CT-CTC--CGTT-T-C-AAATCACT-----ATT-GC--A----AT-AG-TA----T--TT-TTAAAAAAAACAACA--TTTTAT-----------------GGC------TA---------A----TTTTTTAAAA--TTGGT-TATTGCC-TTCTT--GTA-GCCACTGA
gi|8 : GGGGTGG-AAATTTA-G-G--TAAATG-TA-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTT-GGA-GCCC-AGATTG-AAAA-TCATGGG-CCCGC---------------------------------------AAC-A--TTTT-GCCTA--TTTCC----TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTC-AAT-----------TT-TCCACTTCCAA-GCA--CTAGC-TCTT-TCATAT--A-CCCTTCTTCT-CCAAT-AA--A-TCA--CT-AT-CTG--ATTCA-TT-CTCACTCTCT-CTC--CGTT-T-CTAAATCAC-----------C--A----AT-AGTTG----T--TT-TTTTTTTTTTTTTTTTTTTT--T-----------------GGT------TA---------A--TC-TTTTT---A--TTGGT-TTTTGCT-TTCCT--GTATGCCACTGA
gi|9 : --AG---CATC-AAATAT-TTTAG-A-GCCTTGGATTG-AAAA-TCATGGG-CCTGTTCTGCA--------ATAT-C-AAA---------TTTGT-GACAA--TTTTTG-CTA--TTT-TCT--TT----CT-TT-CAT-T--ATT-------TGTTAT--C-ATTT-AATTTCTGTTT-AATT-TCTACTTCTAG-C-A--CTA-C-TC-----ATATG-AACCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TT-C-------CT-CTC--CGTT-T-CAAAATCACC-----ATT-AC--A----AT-AG-TAT---T--TT-TT---------------TTT--T-----------------TC-------TAATTTGCCTTA--TTTTTTTT---A--TGGGG-TGTTGCC-TTCTT--GTA-ACCACTGA
Alignments
lowQualScore : 6666666666666666666666666666666666 1111 1111111 2222 22222222222222222222 22222222 7777777777777777777777777777777777777777777777777777777777
lowQualScore : 3 3 3 55 3 55 3 3 3 3 77 555 3 3 3 3 77 6 3 1 3 9999999999999999999999999999999999 6 3 3 44 3 6 55 3 6666 7777 3 3 3 55 1111111 7 2222 3 777 3 3 33333333333333333333 88 3 8 3 44 3 44 3 3 44 3 11111111 3 44 3 3 88888 3 44 7777 6 3 9999 44 3 7777777777777777777777777777777777777777777777777777777777 44 666 88 3 3 88 3
lowQualScore : . . . .. . .. . . . . .. ... . . . . .. . . . . .................................. . . . .. . . .. . .... .... . . . .. ....... . .... . ... . . .................... .. . . . .. . .. . . .. . ........ . .. . . ..... . .. .... . . .... .. . .......................................................... .. ... .. . . .. .
lowQualScore : 6 6 6 00 3 11 1 3 3 3 33 444 3 3 3 3 66 7 3 4 6 9999999999999999999999999999999999 7 3 2 66 3 7 00 6 4444 7777 6 6 6 00 8888888 3 0000 6 000 6 5 22222222222222222222 77 6 8 3 66 3 66 3 3 66 3 66666666 3 66 3 3 33333 3 66 1111 7 3 6666 22 1 2222222222222222222222222222222222222222222222222222222222 66 444 66 6 6 66 6
consensus : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCCCCG----------A-AT-T-AAA---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAA-A-G--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----T--TT-TT---------------TTT--T-----------------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
Reference ( family-1743 ) : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCCCCG----------A-AT-T-AAA---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAA-A-G--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----T--TT-TT---------------TTT--T-----------------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
gi|1 : GGTGG-AAA---A-GCG--TAA-TG-TC-TAAG-A-GCC-AAAACAGGCTCC-TC-AG---CATA-AAA-AT-TTTAGGA-GCCC-AGATTG-AAAAATCATGGG-CCCGCCCGT----------A-AT-T-TAAGTAATGTAGTT-GT-GATAAATTTTT-G-CTA--TT--C----TT----CT-TT-CAT-T--ATT-------TGT-AT--C-ATTC-AATGTCTGTTTCAATT-TCCACTTTCAA-A-G--CTA-C-TCTTCTCATA-G-A-CGCATTTTCT-CCAAT-AACGA-TCAACTT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATTAGC--AAATCAT-AA-TA----T--TTATT---------------TTA--A-----------------AA-------AA---------A--TCTTTTTT---AT-TTGGTCTTTTGCCTTTCTTG-GTA-GTCGC
gi|10 : GGGTG---AATTTA-A-GGTTAAATGGTC-TAAGGA-GC---AA-CGG-CTCC-T--AG---CATC--AA-GT-TTTAGGA-GCCC-CGATTGAAAAA-TCAGGGG-CCCACC--------------------AAG---------TT-GTGGACAA--TTTT-G-CTA--TTT-C----TT----AT-TTACAG-TAGATT-------TGTAAT--CAATTCGAATTTC-GTTAAAATTGTCCAACTTCAA-----------------------G-A-CCTCTCATCCG-CAATAAA--A-TCG--CT-ATATCG--ATTCA-CC-ATCGTCATCTGCTCAGCGGT-T-CAAAACGAGC-----TTC-GC--A----ATAAG-TA----T--AT-TT---------------Tac
gi|11 : c---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--C-------ATT-------CAATT-TCCACTTC--A-A-G--C-A-C-TCT---CATATG-A-TCCTTCTTCTGCCAAT-AA--A-TCG--CT-AT-TAC--ATTCA-TC----------T-CTC----TT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----TATTT-TT---------------TTT--T-----------------GGC------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTC--GTA-GCCACTGA
gi|12 : gtATG-T--TCAGG--GCC-AAA-TGGGCTCC-CCAAG-----TCTAAA-AT-TTTAAGC-ATCC-ACATTG-AAGA-TAATTAG-CCCACATTT----------A-TC-T-AAA---------T---T-GAC-A--TTTT-G-CTa
gi|13 : TCATCCGCCAAT-AA--A-TCG--CT-AT-TCG--ATTCA-TC----ACTCTCT-CTC--CGTT-T-CAAAATCACT-----ATC-GC--A----AT-AG-TA----T--TT-TT---------------TTT--G-----------------GT-------TA---------A--TCTTT
gi|14 : tc----T--TT-TT---------------TTT--T-----------------GGC------TA---------A--TTTTTTTT---AAATTGGT-TTTTGCC-TTCTC--ATA-GCCACTGA
gi|15 : AAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AC-TTTAGGA-GCCC-GAATTG-AAAA-at
gi|16 : AGGGGTGG-AAATTTA-G-G--TAAATG-TCTTAAGGA-GCC-AAA-CGGGCTTC-C--AG---CA
gi|17 : CAGAGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GC
gi|2 : CAGGGGTGG-AAA---A-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CAGGCTCC-T--AG---CATA-AAA-AT-TTTAGGA-GCCC-AGATTG-AAAA-TCATGGG-CCCGCCCCGTAATTTAAGTA-AT-T-AGT---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATGTCTGTTTCAATT-TCCACTTTCAACA-G--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCTCCAAT-AC--A-TCA--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-CA-TA----A--TA-TT---------------TTT--T-----------------AA--------A---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
gi|3 : AGGGGTGG-AAATTTA-G-G--TAAATG-TC-TATGAA-GCCAAAA-CGGGCTCCTT--AGCCCCATC-AAA-ATCTTTAGGA-GCCC-GGATTG-AAAG--CAT-GG-CCCGCTCTGT---------A-AT-C-AAT---------TT-GT-GACAA--TTTT-GCCTA---TT-C----TT----CT-TT-CATCT--ATT-------TTT-GTTATCATTC-AATTTCTATTTACCCT-TTCACTTTC--------TTGCC-TCTTCAC-TATGAA-CCCTTCTTCCGCC-AT-AA--ATTTG--CT-AT-CCG--ATTCA-----------TCT-CTC--CGTT-TCCAAAATCACC-----ATT-GC--A----ATAAG-TA----T--TT-TT---------------TCT--TTTTTGC-----------GC-------TA---------A--AACTTTTA---A--TTGGT-TTTTGCC-TTCCTCCATA-GCCACTGA
gi|4 : GGGTGG-AAATTTA-G-G--TAAATG-TC-TGAGGA-GCC-AAA-CAGTGTCC-T--AG---CATT-AAA-AT-TCTAGGA-GTCC-AGATTG-AAAA-TCACGGG-CCCG----A----------A-ATCT-AAG---------TTTGT-GACAG--TT---G-CAA--TTT-TAAATTTGAAATTATT-CAT-T--ATTATGTACATGT-AT--C-ATTC-AATTTCTGTTTCAATT-TCCACTTC--A-A-G--C-A-C-TCTT-TCATATA-C-CCCTTCTTCTTCCAAT-AA--A-TCA--CT-AT-TTG--ACTCA-TC-CTCCCTCTCT-CT----GTT-T-CAAAATCACC-----TTT-GC--A----AT-CG-TA----T--TG-GT---------------GGT--G-----------------GGGGGGGGTTG---------AACTTTTTTTT---A--TTGGT-TTTTGCC-TTCTA--GTA-a
gi|5 : aAGGGGTGGAAAATTTA-G-G--T-AATG-T--TAAGGAGGCC-AAA-CGGGCTCT-T--AG---CATC-AAA-AT-TTTAGGAGGCCC-AGATTG-AAAA-TCATGGGAACCGCCC-------------------AAA---------TT-TT-G-----------G-CTA--TTT-CT---TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTA-AA-TTCTGTTTCAATT-TCCAC-TTCAA-G-G--C-A-C-TCTT-TCATAT--A-CAC--CTTCCTCCAAT--A--A-TCA--CT-AT-CTG--ATTCA-TCTCTCTCTCTTT-CTT--CGTTAT-CAAAATCACCATATGATT-GCAAA----AT-CG-TGATTTT--TT-TT---------------TTT--T-----------------GGT------TA---------A--TCTTTTTT---A--TTGGT-TTTGAAC-TTCTT--GTA-GCCACTt
gi|6 : GGGGTGG-AAATTAAAG-G--TAAAT---T-TAAGGA-GCC-AA--CGGGCTCC-T--AG---CAGC-AAA-AT-TTTAGGA-GCCC--AATTGAAAAA-TCCT-GG-CCCG--CCG-----------------AAA---------TT-A-----------TT-G-CTATTTTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AC--TCATTC-AATTT-TGTTTC-ATT-TCCAC-TTCAA-A-GCACTA-CATCTT-TCATAT--A-CCCTTCTTCC-CCAAT-AA--A-T-A--CTAAT-CTGAAATTCAGTC-TGCACTCTCT-CTC--TAT-----ATAAT-ATA-----ATT-----------T-TG-TT----T--TT-TT---------------TTT--TTGTTTTTGTTTTTTTGAGT-------TA---------A--TCTTTTTT---A--TTGG--TTTTGCT-TTCCT--GTA-GCCACT
gi|7 : AGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCTCTGT---------A-AT-TCAAA---------TT-GT-GACAA--TTTT-G-CTA------C----TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTC-AATTTCTGTT--GAT--------------A-G--C-A-----TTCTCATATG-A-CCCTTCTTCTGCCAAT-AA--A-TCG--CT-CT-CCA--ATTCA-TC---------CT-CTC--CGTT-T-C-AAATCACT-----ATT-GC--A----AT-AG-TA----T--TT-TTAAAAAAAACAACA--TTTTAT-----------------GGC------TA---------A----TTTTTTAAAA--TTGGT-TATTGCC-TTCTT--GTA-GCCACTGA
gi|8 : GGGGTGG-AAATTTA-G-G--TAAATG-TA-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTT-GGA-GCCC-AGATTG-AAAA-TCATGGG-CCCGC---------------------------------------AAC-A--TTTT-GCCTA--TTTCC----TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTC-AAT-----------TT-TCCACTTCCAA-GCA--CTAGC-TCTT-TCATAT--A-CCCTTCTTCT-CCAAT-AA--A-TCA--CT-AT-CTG--ATTCA-TT-CTCACTCTCT-CTC--CGTT-T-CTAAATCAC-----------C--A----AT-AGTTG----T--TT-TTTTTTTTTTTTTTTTTTTT--T-----------------GGT------TA---------A--TC-TTTTT---A--TTGGT-TTTTGCT-TTCCT--GTATGCCACTGA
gi|9 : --AG---CATC-AAATAT-TTTAG-A-GCCTTGGATTG-AAAA-TCATGGG-CCTGTTCTGCA--------ATAT-C-AAA---------TTTGT-GACAA--TTTTTG-CTA--TTT-TCT--TT----CT-TT-CAT-T--ATT-------TGTTAT--C-ATTT-AATTTCTGTTT-AATT-TCTACTTCTAG-C-A--CTA-C-TC-----ATATG-AACCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TT-C-------CT-CTC--CGTT-T-CAAAATCACC-----ATT-AC--A----AT-AG-TAT---T--TT-TT---------------TTT--T-----------------TC-------TAATTTGCCTTA--TTTTTTTT---A--TGGGG-TGTTGCC-TTCTT--GTA-ACCACTGA
blockSeqs : A A . GT G CT G A . T CA CCC T T C G TG A . G A CCCCGTAATTTAAGTAATTAGT T G A . T C TT C AAAT GAAA A A C AG ATGTACA A TATC G AAA G C CAAAGCACTACATCTT GA A G A . T . A A AA G TCTCTCTC G AG A C ATATG . AA . A T ATTT AT . TTTTTGTTTTTGTTTTTTTGAGTTA AC AAA AA . . CC T
blockSeqs : . . . . . C . . . . . . . . . . C A . T . TTCTGCAATATCAAA T . A . . C . . CT . . . . . . T CA . TCA . T CAACAGCTACTCTTC G . G . . . . . . . . ATCGTCA . . . . . . . . A . T . . AAAAAAAACAACATTTTATGGCTA . . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . A . . G . CTCTGTAATTCAAA . . A . . . . . T . . . . . . . CC . TAC . T CAAGCACTAGCTCTT G . G . . . . . . . . CTCACTC . . . . . . . . . . . . . TTTTTTTTTTTTTTTTTTTGGTTA . . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . G . . G . CTCTGTAATCAAT . . A . . . . . . . . . . . . . TC . TCA . T CAAGGCACTCTT G . T . . . . . . . . CTCCCTC . . . . . . . . . . . . . TTTTTCTAATTTGCCTT . . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . A . . G . CATTTATCTAAA . . A . . . . . . . . . . . . . C . TCA . T CTTGCCTCTTC A . G . . . . . . . . TGCACTC . . . . . . . . . . . . . GGTGGGGGGGGGTTG . . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . G . . G . AAATCTAAG . . A . . . . . . . . . . . . . C . CA . T TAGCACTACTC G . T . . . . . . . . CTCACTC . . . . . . . . . . . . . TCTTTTTTGCGCTA . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . A . . G . CCCAAA . . A . . . . . . . . . . . . . C . TC . T AAGCACTCTT G . T . . . . . . . . ACTC . . . . . . . . . . . . . TTTTGGCTA . . . . . . .
blockSeqs : . . . . . C . . . . . . . . . . A . . G . CCGAAA . . . . . . . . . . . . . . . . C . TA . . AAGCACTCT . . G . . . . . . . . C . . . . . . . . . . . . . TTTTGGCTA . . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . G . . . . CCAAG . . . . . . . . . . . . . . . . C . G . . AGCATTC . . G . . . . . . . . . . . . . . . . . . . . . . TTTTGGTTA . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . A . . . . C . . . . . . . . . . . . . . . . C . . . . CAA . . . . . . . . . . . . . . . . . . . . . . . . . TTTGGTTA . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TTTTAAA .
blockSeqs : . . . . . .
blockSeqCons : ** CCCGAATCAAG*********************** ** CAAAGCACTCTT******** ** ** **** ** **
originalCons : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCCCCG----------A-AT-T-AAA---------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAA-A-G--CTA-C-TCTTCTCATATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----T--TT-TT---------------TTT--T-----------------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
finalCons : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCC-AAA-CGGGCTCC-T--AG---CATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCCCGAATCAAG-----------------------TT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAAAGCACTCTT--------TCATATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----T--TT-TT---------------TTT--T-----------------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
Alignments
lowQualScore : 11 8888888888888888888888888888888888888 1111 1111111 2222 11111 11111111111111111 22222222 7777777777777777777777777777777777777777777777777777777777
lowQualScore : 3 3 3 55 3 55 3 6 00 555 3 3 3 3 77 6 3 1 3 1111111111111111111111111111111111111 3 3 44 3 6 55 3 6666 7777 3 3 3 55 1111111 7 2222 3 777 3 3 44444 66666666666666666 3 88 3 8 3 44 3 44 3 3 44 3 11111111 3 44 3 3 88888 3 44 7777 6 3 9999 44 3 7777777777777777777777777777777777777777777777777777777777 44 666 88 3 3 88 3
lowQualScore : . . . .. . .. . . .. ... . . . . .. . . . . ..................................... . . .. . . .. . .... .... . . . .. ....... . .... . ... . . ..... ................. . .. . . . .. . .. . . .. . ........ . .. . . ..... . .. .... . . .... .. . .......................................................... .. ... .. . . .. .
lowQualScore : 6 6 6 00 3 11 1 7 44 444 3 3 3 3 66 7 3 4 6 9999999999999999999999999999999999999 3 2 66 3 7 00 6 4444 7777 6 6 6 00 8888888 3 0000 6 000 6 5 33333 88888888888888888 6 77 6 8 3 66 3 66 3 3 66 3 66666666 3 66 3 3 33333 3 66 1111 7 3 6666 22 1 2222222222222222222222222222222222222222222222222222222222 66 444 66 6 6 66 6
consensus : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCCAAA-CGGGCTCCT--AGC---ATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGC-CC----------G----------A-A-TC-AAGTT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAA-AGC-A----C----T-CTT-TCA-TATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----T--TT-TT---------------TTT--T-----------------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
Reference ( family-1743 ) : CAGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCCAAA-CGGGCTCCT--AGC---ATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGC-CC----------G----------A-A-TC-AAGTT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATTTCTGTTTCAATT-TCCACTTTCAA-AGC-A----C----T-CTT-TCA-TATG-A-CCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----T--TT-TT---------------TTT--T-----------------GG-------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
gi|1 : GGTGG-AAA---A-GCG--TAA-TG-TC-TAAG-A-GCCAAAACAGGCTCCTC-AGC---ATA-AAA-AT-TTTAGGA-GCCC-AGATTG-AAAAATCATGGG-CCCGC-CC----------GTAATTTAAGTA-A-TG-TAGTT-GT-GATAAATTTTT-G-CTA--TT--C----TT----CT-TT-CAT-T--ATT-------TGT-AT--C-ATTC-AATGTCTGTTTCAATT-TCCACTTTCAA-AGCTA----C----T-CTTCTCA-TA-G-A-CGCATTTTCT-CCAAT-AACGA-TCAACTT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATTAGC--AAATCAT-AA-TA----T--TTATT---------------TTA--A-----------------AA-------AA---------A--TCTTTTTT---AT-TTGGTCTTTTGCCTTTCTTG-GTA-GTCGC
gi|10 : GGGTG---AATTTA-A-GGTTAAATGGTC-TAAGGA-GC--AA-CGG-CTCCT--AGC---ATC--AA-GT-TTTAGGA-GCCC-CGATTGAAAAA-TCAGGGG-CCCAC-----------------------------C-AAGTT-GTGGACAA--TTTT-G-CTA--TTT-C----TT----AT-TTACAG-TAGATT-------TGTAAT--CAATTCGAATTTC-GTTAAAATTGTCCAACTTCAA----------------------------G-A-CCTCTCATCCG-CAATAAA--A-TCG--CT-ATATCG--ATTCA-CC-ATCGTCATCTGCTCAGCGGT-T-CAAAACGAGC-----TTC-GC--A----ATAAG-TA----T--AT-TT---------------Tac
gi|11 : cTT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--C-------ATT-------CAATT-TCCACTTC--A-AGC-A----C----T-CT---CA-TATG-A-TCCTTCTTCTGCCAAT-AA--A-TCG--CT-AT-TAC--ATTCA-TC----------T-CTC----TT-T-CAAAATCACC-----ATT-GC--A----AT-AG-TA----TATTT-TT---------------TTT--T-----------------GGC------TA---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTC--GTA-GCCACTGA
gi|12 : gtATG-T--TCAGG--GCCAAA-TGGGCTCCCCAAG-----TCTAAA-AT-TTTAAGC-ATCC-ACATTG-AAGA-TAATTAG-CCCAC-AT----------T----------T-A-TCTAAAT---T-GAC-A--TTTT-G-CTa
gi|13 : TCATCCGCCAAT-AA--A-TCG--CT-AT-TCG--ATTCA-TC----ACTCTCT-CTC--CGTT-T-CAAAATCACT-----ATC-GC--A----AT-AG-TA----T--TT-TT---------------TTT--G-----------------GT-------TA---------A--TCTTT
gi|14 : tc----T--TT-TT---------------TTT--T-----------------GGC------TA---------A--TTTTTTTT---AAATTGGT-TTTTGCC-TTCTC--ATA-GCCACTGA
gi|15 : AAGGA-GCCAAA-CGGGCTCCT--AGC---ATC-AAA-AC-TTTAGGA-GCCC-GAATTG-AAAA-at
gi|16 : AGGGGTGG-AAATTTA-G-G--TAAATG-TCTTAAGGA-GCCAAA-CGGGCTTCC--AGC---A
gi|17 : CAGAGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GC
gi|2 : CAGGGGTGG-AAA---A-G-G--TAAATG-TC-TAAGGA-GCCAAA-CAGGCTCCT--AGC---ATA-AAA-AT-TTTAGGA-GCCC-AGATTG-AAAA-TCATGGG-CCCGC-CCCGTAATTTAAGT---------A-A-TT-AGTTT-GT-GACAA--TTTT-G-CTA--TTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AT--CCATTC-AATGTCTGTTTCAATT-TCCACTTTCAACAGCTA----C----T-CTTCTCA-TATG-A-CCCTTCTTCCTCCAAT-AC--A-TCA--CT-AT-CCG--ATTCA-TC-CTCACTCTCT-CTC--CGTT-T-CAAAATCACC-----ATT-GC--A----AT-CA-TA----A--TA-TT---------------TTT--T-----------------AA--------A---------A--TCTTTTTT---A--TTGGT-TTTTGCC-TTCTT--GTA-GCCACTGA
gi|3 : AGGGGTGG-AAATTTA-G-G--TAAATG-TC-TATGAA-GCCAAAACGGGCTCCTT-AGCCCCATC-AAA-ATCTTTAGGA-GCCC-GGATTG-AAAG--CAT-GG-CCCGCTCT----------GT---------A-A-TC-AATTT-GT-GACAA--TTTT-GCCTA---TT-C----TT----CT-TT-CATCT--ATT-------TTT-GTTATCATTC-AATTTCTATTTACCCT-TTCACTTTC-T-TGC------C----T-C-T-TCACTATGAA-CCCTTCTTCCGCC-AT-AA--ATTTG--CT-AT-CCG--ATTCA-----------TCT-CTC--CGTT-TCCAAAATCACC-----ATT-GC--A----ATAAG-TA----T--TT-TT---------------TCT--TTTTTGC-----------GC-------TA---------A--AACTTTTA---A--TTGGT-TTTTGCC-TTCCTCCATA-GCCACTGA
gi|4 : GGGTGG-AAATTTA-G-G--TAAATG-TC-TGAGGA-GCCAAA-CAGTGTCCT--AGC---ATT-AAA-AT-TCTAGGA-GTCC-AGATTG-AAAA-TCACGGG-CCCG--------------A----------A-A-TCTAAGTTTGT-GACAG--TT---G-CAA--TTT-TAAATTTGAAATTATT-CAT-T--ATTATGTACATGT-AT--C-ATTC-AATTTCTGTTTCAATT-TCCACTTC--A-AGC-A----C----T-CTT-TCA-TATA-C-CCCTTCTTCTTCCAAT-AA--A-TCA--CT-AT-TTG--ACTCA-TC-CTCCCTCTCT-CT----GTT-T-CAAAATCACC-----TTT-GC--A----AT-CG-TA----T--TG-GT---------------GGT--G-----------------GGGGGGGGTTG---------AACTTTTTTTT---A--TTGGT-TTTTGCC-TTCTA--GTA-a
gi|5 : aAGGGGTGGAAAATTTA-G-G--T-AATG-T--TAAGGAGGCCAAA-CGGGCTCTT--AGC---ATC-AAA-AT-TTTAGGAGGCCC-AGATTG-AAAA-TCATGGGAACCGC-CC----------A----------A-A-T------------------TTTG-G-CTA--TTT-CT---TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTA-AA-TTCTGTTTCAATT-TCCAC-TTCAA-GGC-A----C----T-CTT-TCA-TAT--A-CAC--CTTCCTCCAAT--A--A-TCA--CT-AT-CTG--ATTCA-TCTCTCTCTCTTT-CTT--CGTTAT-CAAAATCACCATATGATT-GCAAA----AT-CG-TGATTTT--TT-TT---------------TTT--T-----------------GGT------TA---------A--TCTTTTTT---A--TTGGT-TTTGAAC-TTCTT--GTA-GCCACTt
gi|6 : GGGGTGG-AAATTAAAG-G--TAAAT---T-TAAGGA-GCCAA--CGGGCTCCT--AGC---AGC-AAA-AT-TTTAGGA-GCCC--AATTGAAAAA-TCCT-GG-CCCGC-CG----------A----------A-A-TT-A-----------------TT-G-CTATTTTT-C----TT----CT-TT-CAT-T--ATT-------TGT-AC--TCATTC-AATTT-TGTTTC-ATT-TCCAC-TTCAA-AGC-A----CTACAT-CTT-TCA-TAT--A-CCCTTCTTCC-CCAAT-AA--A-T-A--CTAAT-CTGAAATTCAGTC-TGCACTCTCT-CTC--TAT-----ATAAT-ATA-----ATT-----------T-TG-TT----T--TT-TT---------------TTT--TTGTTTTTGTTTTTTTGAGT-------TA---------A--TCTTTTTT---A--TTGG--TTTTGCT-TTCCT--GTA-GCCACT
gi|7 : AGGGGTGG-AAATTTA-G-G--TAAATG-TC-TAAGGA-GCCAAA-CGGGCTCCT--AGC---ATC-AAA-AT-TTTAGGA-GCCC-GGATTG-AAAA-TCATGGG-CCCGCTCT----------GT---------A-ATTC-AAATT-GT-GACAA--TTTT-G-CTA------C----TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTC-AATTTCTGTT--GAT--------------AGC-A----T----T-C---TCA-TATG-A-CCCTTCTTCTGCCAAT-AA--A-TCG--CT-CT-CCA--ATTCA-TC---------CT-CTC--CGTT-T-C-AAATCACT-----ATT-GC--A----AT-AG-TA----T--TT-TTAAAAAAAACAACA--TTTTAT-----------------GGC------TA---------A----TTTTTTAAAA--TTGGT-TATTGCC-TTCTT--GTA-GCCACTGA
gi|8 : GGGGTGG-AAATTTA-G-G--TAAATG-TA-TAAGGA-GCCAAA-CGGGCTCCT--AGC---ATC-AAA-AT-TTT-GGA-GCCC-AGATTG-AAAA-TCATGGG-CCCGC----------------------------------------AAC-A--TTTT-GCCTA--TTTCC----TT----CT-TT-CAT-T--ATT-------TGT-AT---CATTC-AAT-----------TT-TCCACTTCC-A-AGC-ACTAGC----T-CTT-TCA-TAT--A-CCCTTCTTCT-CCAAT-AA--A-TCA--CT-AT-CTG--ATTCA-TT-CTCACTCTCT-CTC--CGTT-T-CTAAATCAC-----------C--A----AT-AGTTG----T--TT-TTTTTTTTTTTTTTTTTTTT--T-----------------GGT------TA---------A--TC-TTTTT---A--TTGGT-TTTTGCT-TTCCT--GTATGCCACTGA
gi|9 : --AGC---ATC-AAATAT-TTTAG-A-GCCTTGGATTG-AAAA-TCATGGG-CCTGT-TCTGC-------A----------ATA-TC-AAATTTGT-GACAA--TTTTTG-CTA--TTT-TCT--TT----CT-TT-CAT-T--ATT-------TGTTAT--C-ATTT-AATTTCTGTTT-AATT-TCTACTTCTA---GC-A----C----TACT---CA-TATG-AACCCTTCTTCCGCCAAT-AA--A-TCG--CT-AT-CCG--ATTCA-TT-C-------CT-CTC--CGTT-T-CAAAATCACC-----ATT-AC--A----AT-AG-TAT---T--TT-TT---------------TTT--T-----------------TC-------TAATTTGCCTTA--TTTTTTTT---A--TGGGG-TGTTGCC-TTCTT--GTA-ACCACTGA