lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111
lowQualScore : 11 111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11 55555 111111111 3333333333333 44444444444 11 111 66666666666666666666666666 111 11111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333 22222222222222222222222222222222222222222222222222222222222222222222222 111 11 22222 4444444444444444444444444444444444444444444444 11111111111 1 1 11 1 1 11111111111 11 111 22222222222222222222222222222222222222222222222
lowQualScore : 4 4 55 4 55 4 222 3 3 777777777777777777777777777777777777777777777777777777777777777777777777777777777777 22 3 00000 3 3 3 1 3 777 3 3 3 3 2 444444444 3 1111111111111 55 55 4 00000000000 4 55 111 555 4 66666666666666666666666666 3 000 3 7 3 77777777777777777 3 9 6 3 7 9999 777777777777777777777777777777777777777777777777777777777777777777777777777777777 3 3 55 3 3 77777777777777777777777777777777777777777777777777777777777777777777777 55 3 555 55 000 8888888888 8 44 3 44444 77777 4 99 4 3 3 2222222222222222222222222222222222222222222222 3 55 777 44 3 55 3 11111111111 3 7777 3 0 4 2 55 11 3 3 3 88 6 0 3 44 2 99999999999 3 3 55 88 111 55 3 3 3 6 3 333 00000000000000000000000000000000000000000000000 3 3 6 3
lowQualScore : . . .. . .. . ... . . .................................................................................... .. . ..... . . . . . ... . . . . . ......... . ............. .. .. . ........... . .. ... ... . .......................... . ... . . . ................. . . . . . .... ................................................................................. . . .. . . ....................................................................... .. . ... .. ... .......... . .. . ..... ..... . .. . . . .............................................. . .. ... .. . .. . ........... . .... . . . . .. .. . . . .. . . . .. . ........... . . .. .. ... .. . . . . . ... ............................................... . . . .
lowQualScore : 0 0 55 4 22 4 111 6 6 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 33 6 00000 6 6 6 3 6 111 6 6 6 6 1 888888888 6 5555555555555 00 55 0 22222222222 0 66 222 777 4 99999999999999999999999999 6 000 6 3 6 22222222222222222 6 3 2 6 3 6666 777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 6 00 6 6 55555555555555555555555555555555555555555555555555555555555555555555555 00 6 888 00 000 4444444444 0 77 6 33333 77777 0 55 0 6 6 2222222222222222222222222222222222222222222222 6 55 000 99 6 00 6 88888888888 6 7777 6 9 5 7 00 00 6 6 6 66 5 5 3 66 2 88888888888 6 6 00 55 000 00 6 3 3 7 3 555 00000000000000000000000000000000000000000000000 1 1 0 3
consensus : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TTTAACAT--TC-TACTA--ACAT-TG-TA-CAATATTTCAAA-AA--C-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-C-GTAG-AAT--A---ATGCCTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTT-ACCAAGATTCGAAA-T-GCACCCCCCCCC-CC-A----T-------------------AATAATAATGTTTT-GA---A-CC-C-TCAA--CG-N-AT--GCA--TTTACA-CTCAACACTTAGAA-ATATAC-ATG-A-ACT---ACTC-GAAACATACA-TG-AA-AA----------G--------------T---------------A-T----------TGGTAT-CA-CGCGA--TAA-TT-TAGC----GCCAGNCGNCCGNGGNNGNNTCTNNCNNCGAANTNCCGNCGGNGACAGCCGANNGTCN---------C--GAG-CGA-A-GC--CTCG---CATCGATAGCAATGAG-A-TATTG-CTG-CA-TTACGATTG-G--CTGTTTTA---TT-CTT--GCA-TC-A-TGTT-----T----T----------A------A-----A-----C-----GC-CTTTTCTAA--A---CT-AAAATAA-ATAT--AT-A----T-T----TTTTAAA-T----GGG-AAA-GCATTTCCC--C-CAC-TA-A-GAA--CCAACAAATTACAC-TT--TTAATCTTTA--CT-TTA--TTTTT-CT-A--C-ACATAA---TAGG--TT-CGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CG-CCTTC-TGGCGGC
Reference ( gi|3 ) : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACAACCGC-AAACT--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTC---------AT--GTAATAAT-CATAATTATTTAACAT--TC-TA-----ACAT-TG-TA-CAATATTTCAAA-AA--C-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTCT-CTG-C-GTAA-AAT--AT--ATGCCTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTT-TCCAAGATTCGAAA-T-GCACCCCCCCCC-CC------T-------------------AATAATAATGTTTT-GA---A-CC-C-TCAA--CG-A-AT--GCA--TTTACA-CTCAACGCTCAGAA-ATATAC-ATG-A-GCT---A----GAAACATACA-TG-AA-AA----------G--------------T---------------A-T----------TGGTAT-CA-CGCGA--TAA-TT-TAGC----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------C--GAG-CGA-A-GC--CTCG---CATCGATAGCAATGAG-A-TATTG-CTC-CA-TTGCGATTG-G--ATGTTTTA---TT-CTT--GCA-TC-A-TGTT-----T----T----------A------A-----A-----C-----GC-CTTTTCTAA--A---CT-AAAATAA-ATAT--AT-A----T-T----TTTTAAA-T----GGG-AAA-GCGTTTCCC--C-CAC-TA-A-GAA--CCAACAATTTACAC-TT--TAAATCTTTA--CT-TTA-CTTTTT-CT-A--C-CCATAA---TAGG--TT-CGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CG-CTTTC-TGGCGGC
gi|2 : AAACACA-TTGATGCAAAT-GT--CAAAA-GAACGGCCGC-AA-CC--CAATTGTATTT-TTA--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TTTAACATTCTC-TA-----ACAT-TG-TA-CAATATTTC-AA-AA--C-CTTTG-A-ATGAATTTTTAA-GGGTACA-AATTTTT-CTG-C-GTAG-AAT--AA--ATGCCTTTTGTTATATCC--GCAA--CTTCGA-CT-----------TT-GTTT-ACCAAGATTCGAAA-T-GCCCCCCCCCCC-CCCCCCAAT-------------------AATAATAATGGTTT-GA---ACCC-C-TCAA--CG-T-AT--GCA--TTTACA-CTCAAC-CTTA-AA-ATATAC-ATG-A-ACT---ACTC-GAAA---ACA-TG-AA-AA----------G--------------TTGC------------G-TTTTACTTTTATGGTAG-CA-CGCGA--TAA-TT-TTGC-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------N--NNN-NNN-N-NN--NNNN---NNNNGATA-------------TTG-CTG-CA-TTGCGATTG-GCTGTGTTTTA----T-CTT--GCA-TC-A-TGCTTTGAAT----T----------A------A-----A-----T-----GC-CTTTTTT-A--A---CT-AAAATTA-ATAT--AT-A----TATAATATTTTAAG-T----GGG--AA-GCATGT-CC--C-CAC-TA-A-GAA--CCAA----TTA-AC-TT--TA------------------TTTTT-CT-T--C-ACATA-------G--TT-CGCAGAAAACAC-ATTAACC-ACTTA-C-A-------------GT--------------TTTCATAATCATATA---ACCGAC-CG-CCCTC-TGGTG
gi|1 : aggAAACACGCTTGACGGCAGC-GT--CAA---GGACGGCCGC-AAACCGCCACTTTT-TTC-ATC--------------A--------------AGAGAAATTTTTAA-CA-TGTTTC---------ATTGGCAATGAT-CATA----TTTGACAT--TC-TAGCTCAACAT-TG-TA-CAATATTTAAAA-AA--CGCTTTGAA--T-AATTTTTAA-GG-TACAGAACTTTTTCTGGC-GTAATAAT--AA--ATGC--TTAGTTAATAAC--GGAAAATTTCGA-CT-TT--ATA---TT-GTTT-ACCAAG-TTCGAAA---GCAGCCCCCCCC-CC------TCCCCCCTCCCCCCGATAATAATAATAATGTTTTTGA---A-CCGC-TCAA--CG-T-ATTGGCA-----ACA-C------CTTAGAA--TATAC-ATG-AAGCTTTTATC--GAAA-ATAAA-TGTAATAA----------G--------------TTTGCGTTTTACATTTA-T----------TGGTATTCAGCGCGAAATAA-TT-TAGT----TGGCGCAGAACAACCGAGGGTCGGCTGATCTCCCGCATTATCCAACCGGAGACAGTCGAGTGGGTCTC--GAGGCGAGA-GG--CTCG---CATCGA-AGCAATGAG-A-TATTG-CTG-CA-TTACGATTG-G--CTGTTTTA---TT-CTTG-GCA-TC-ATTGTT-----TTAAAT----------A------A-----A-----C-----GCGCTTTTTCAA--A---CTAAAAATTA-ATAT--AT-AATTTT-T----TTTTAAA-T----GGG-AAAGGCATTT-CC--C-CACTTA-A-GAAAGCCAGCAAATTACAC-TTGCT-AATCTTTAGTCT-TT--TTTTTT-CT-A--C-ACATAA---TAGGCTTT-CGCAG---ACAC-A-TAACC-ACTTA-T-A-------------GT--------------TTTTCATATCATATATTAACCGACGCG-CCTTCTTGGCGGccagccgg
gi|4 : aagAAACACA-TTAAC-CAAGCCGT--CAAAACGAACGGCCGCGAAACC--CACTTGT-TT--ATC--------------A--------------T--------------CA-TATTCT---------A------------CAT-----TCTA-------C-TA-----ACAT-TG-TAACAATATTTCAACCAA--C-CTTTGAATATGAATTTTTAA-GGGTACA-A--------------TAA-AGT--------GCCTTTTGT-AATTCC--GCAA--CTTCGAACTCTT--A-A---TTCGTGT-ACCAAAGATCGAAA-T-G-ACTCCCCTCC-CCAA----T-------------------AATAATAATGTTTC-GAT--A-CC-C-TCAA--CC-ATAT--GGT--TTTACA-CTCACCACTTAGAA-ATATAA-TTG-A-ACT---A------------C------------------------------------------------------------------GTAT-CA-CGCGA--TAA-TTCTAGC----TCCAGAAACCCGAAGGTCGGCCTTGTTTCCGCAAATCTCCGACGGAGACTGTCGAATG---------TCTGAG-CGA-C-CCTTCTCG---CATCGATAGC-ATGAG-ATTATTG-CTG-CA-TTACGATTG-GC-CTGTTTTA---TTCCTT--GCA-TCTA-TGTTTAAA-T----T----------A------A-----A-----A-----TG-CTTTTCTAA--A---CT-AAAATAA-AT-T--AT-A----T-C----TTTTAAA-T----GGGAAAA-ACATATCCC--TAAAC-TA-C-GAAC-CCCACAA-ATAAAC-TT--TTTATCTTTA--C--TTA-ATTTTT-CT-A--C-TCATAA---GAAG--TT-CTCGC-AAAAAC-A-TAACC-ACTTA-T-A-----------------------------T-----------------AACTA--CG-C-TGC-TGGCGGC
gi|5 : gAAACACA-TTAACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A----------------------------------------------------------T-CATA----TTTAACAT--TC-TACTA--ACAT-TG-TA-CAATATTTCAAA-AA--C-CTTTGAA-ATGAATTTTTAA-GGGTACA-A--------------TAA-A---------TGCCTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTGT-ACCAAGATTCGAAA-T-GCACTCCCCTCC-CCCAA---T-------------------AATAATAATGTTTC-GA---A-CC-C-TCAA--CA-T-AT--GGT--TTTACA-CTCACCACTTAGAA-ATATAC-ATG-A-ACT---A----c
gi|10 : caagAAACACA-TTGACGCAAAC-AT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATCGAGAGAAATTTGTAA--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TTTAACAT--TC-TACTA--ACAT-TG-TA-CACAATTTCAAA-A---C-CTTCGAA-ATAAATGTTTAA-GAGTAGA-AACTTTT-CTG-C-GTAG-AAT--A---A----------TAA-TCC--GCAA--CTTCGA-CT-----------TT-GTTT-ACCATGATTCG----------CCCCCCCC-CCAA----T-------------------AATAATAATGTTTT-GA---G-CC-C-TC----------------------------AACACTTAGAA-ATATAC-ATG-A-ACT---ACTC-GAAACATACA-TG-CG-AA----------GTTGCGTTTTACTTTT---------------A-T----------TGGCAT-CA-CGCGA--TAA-TT-TAGTACCAGACACCCGAGGACGGCTGTTTCCGCAAATTAATTTTCAACGGAGACAGCCGAGTGTCT---------C--GAT-CGA-A-GC--CTAG---CATTAATAGCAATGAcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatatatcttttaaatgggaaagcatatccctactaagaaccaacaaataacacttttaatctttacttaatttttctactcataagaagttcgcaaaaacacataaccacttatataacctaccgcc
gi|12 : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------AGAGAAATTTGTAAACA-TGTTTCTATTGTTTCAT--GCAATAAT-CATA----TTTAACAT--TC-TACTA--ACAT-TG-TA-CAATATTTCAAA-AAAAC-CTATGAA-ATGAAATTTTAA-GGGTAAA-AACGTTT-CTA-C-GTAA-AATAAATTGATGCCTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-AAATTT-G-TT-TACAAGATTCGAAA-TAGCAACCCCCCCC-CCAATAATT-------------------AATAATAAGATTAT-AATTTA-CCAC-TCAGGTTA-A-AT--CCA--TTTA
gi|27 : acaagAAACACA-TTGATGCAAGC-GT--CAAAtca
gi|16 : aatatcacaagAATACA-TTGACGCAAGC-GT--CAAGA-GAACGGCCGC-AAACC--CACT--------ATC--------------A--------------------------------TGCTTT---------AT--GCAATAAT-CATA--------------TT-TA-----ACA-------------TTTC-AA-AA--C-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-C-GTAG-AA------------------TAATTCC--GCAT--CTTCGA-CT-----------TT-GTTT-ACCAAGATTCGAAA-T-GCACGCCCC
gi|11 : CA-TTGACGCAGGC-GT--CAAAA-GAACTGTTGC-AAACC--CACTTGT-TTC-ATC--------------ATGAGAAATTTGTAAA--------------CA-TGTTTT---------AT--GCAATAAG-CA--A--ATTTAACAT--TC-TATTA--ACAT-TG-TA-CAATATTT-GAC-AA--C-CTTTGAA-ATGTATTTTTAG-GGGTACA-AACTTTT-CTG-C-GTAG-AAT--AA--ACGA-TTTTGTTAATTCC--GCAA--AATCGA-CT-TT-----------GTTT-GCCAAGATTCGAAA-T-GCACCCCCCCCCTCC------C-------------------AATAATGATGTTTT-GA---A-CT-C-TCAA--CG-A-AT--GCA----------------CTGAAAA-ATATGC-ATG------------------CATACA-TG-AA-AA----------G--------------T---------------T-G----------CGTTAT-CA-CGCGG--TAT-TT-TAGC----
gi|7 : tCA-TTGACGCAAGC-GTTTCAAAA-TT------------CC--CACTGTT-TTCTGTA--------------A--------------G--------------CA-T--TTT---------AT--GCA-TAATTCATA-----TTAACATC-TC-TACTAAAACATCTG-TA-CAATATTTCAAA-----C-CTTTGAA-ATGAA--TTTAATAGGTACA-AACTT-T-CTG-CGGTAG-AAT--AA--ATG-CTTTTGTTAATTCCCGGCAA--CTTCGA-CT-----------TT-GTTTAACCA--ATTTTAAA---G----------------------------------------AATAATAATG-TTT-GA---A-CC-C-TCAA--CGTA-TT--GCATTTTTACAGCTCAACAC-AAGGA-AAATACGATGAA-ACT---ACTCCGAAA-ACACATTG-AA-AAAAATGTTATGG--------------T---------------ATT----------TTATAT-CA-CGTGA--TAATTT-TAGC------ACCCTGACACCCGAAGTCGCTGTCTCCGCAATCCGACGGAGTCAATCGAGTGTCGC---------C--GAG-CGA-A-GC--CTCGC--CATCGATAGC------------TG-TTT-TA-TTGC-----------------------CTT-------------TT-----T----C----------A------A-----A-----C------------TCTAA--AATTTT-AA---AA-ATAT--TT-A----T-T----GCTAAAA-TGGGGGGG-AAA-GCATTCCCCCGC-CAC-TA-A-GAA--CCAATAAATTACAC-TT--T--TTCTTTA--CT-accagacacccgaggtcggctgtc
gi|6 : nnACTTGT-TTC-AT---------------A--------------A--------------CAGTGTTTT---------AG--TTAATAAT-CATA-TTATTTAACATA-TCGTA-----ACAT-TGATA-CA-TATTTCAAA-AA--C--TTTGAA-AGCAATTA--AA-GGGTACA---CTTCT-CT--C-GTAA-AA---GT--ATGCCTTTTGT-AATACC--G-AA--CTT-GA-CT-TTTTA-A---TT-GTTT-TC-AAGATTCGAAATT-GCA-CCCCCCCC-CC------T-------------------AATAATAATGTTTT-GA---A-CC-C-TCAA---G-A-AT--G-A--TCTACA-CTC-ACGCTCAG---ATATACAATG-A-GCT---A----G-AACATTC--TG-AA-AA----------G--------------T---------------A-T----------TGGTAG-CA-CGCGA--TAA-TT-T-GC--------ACACAACCTGAGGTCGGCTTGTTCCGAAATCTCGACGGAGACAAGCGAGTGTCT---------C--GAG-CGA-A-G----TCG---CATC-ATAGCAATG-G-A-TATTGACTC-CC-ATGCGATTGTG--GTGTTTTA---TT-CTT--GCATTC-A-TGTT-----T----T----------A------A-----A-----C-----GC-CTTTTCTAGATA---CT-AAAATAA-ATATCCATCA----T-T----TTT--AA-T----GGG-AAATGCGTTT-CC--C-CAC-TA-A-G-A--CCAACAATTT--AC-TT--TAAATCTTT----C-TTA-CTTTGT-CT-A--C-----AA---TAGG--TT-CGCAG-AAA-AC-A-TAACC-ATT---T-A-------------G---------------T-----------------ACCGAC----CTTTC-TGGC
gi|19 : -TTC-GTA--------------A--------------A--------------CA-TGTTTA---------AT--GCAATAAT-CATA----TTTAACAT--TC-TGCTC--ACAT-TG-TA-CAATGTTTCAAA-A---T-CTTTGAA-ATGAGTATTTAA-GGATACA-AACTT----------TAA----------ATGCC-TTTGTTAATTCC--G
gi|8 : gaaa------T-------------------GATAATAATGTTTT-GA---A-CC-C-TCAG--CG-T-AT--GCAA-TTTACA-CTCAACACTTAGAA-ATATAC-ATG-A-ACT---ACTC-GAAACATACA-TG-AA-AA----------G--------------TTGCATTTTACTTTT-A-T----------TGGTAT-CA-CGCGA--TAA-NN-NNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------C--GAG-CGA-A-GC--CTCG---CATCGGTAGCAATCAG-A-GATTG-TTG-CA-TTACGATTG-G--CTGTTT-A---TT-CTT--GCA-TC-A-TGTT-----T----T----------A------A-----ATTAAAC-----GC-CTTTTCTAA--A---CT------------------------------TTTTAAA-T----GGG-AAA-GCATTTCCC--C--AC-TA-A-GAA--CCAACAAATTACAC-TT--TTAATATTTA--CT-TTA--TTTTT-CT-A--C-ACGTAA---TAGG--TT-CGCAG-AAACA--------C-ACTTA-T-A-------------GT--------------A-----------------ACCGAC-CG-CCTTC-TGGCGGC
gi|9 : ataaatgttgcttggtcatcattttcatatggcgattcctcgtatttagttcacggatttcatattTTT-GA---A-CC-AATCAA--AG-T-ATT-GCA--TTTACA-CTCAACACTTAGAATATATAT-ATG-A-ACT---ACTG-GAAAAATACAATG-AA-------------G--------------TTGCGTTTTTACTTT-A-T----------TGGTAT-GA-CGCGA--TAA-TT-TAGC----ACAAGACACCGAGTTCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------C--GAG-TTA---GT--CTCG---TATCGATAGCAATGAG-A-TATTGGCTG-CA-T-ACGATTG-C--CTGCTT-A---TT-CTTTTGCA-TC-A-TATT-----T----T----------AAATTTAA-----A-----C-----GC-CTTTTCTAA--A---CT-AAAATAATATAT--AT-A----TAT----ATTTAAATT----GGG-AAAGGCATTT-CC--C-CAC-TATATGAA--CCAACAAATTACAC-TT--TAA--CTTTA--CT-TTATTTTTTT-CTAA--C-ACACAAT--TAGG--TT-CGCAG-ACACACTA-TTAAC-ACTTT-TAA-------------GTTTTGATATCATATAT-----------------ACCGAC-CG-CATTC-TGGCGGCcggtaa
gi|13 : TTACA-CTGAACACGTAGAA-ATATGC-A--------------------CATACA-TG-AA-CATTT-------A--------------T---------------A-T----------TGGTAT-CA-CGCGA--TAA-TT-TAGA----ATCAGACACCCGAGGTCGTCTGTCTCCGCAAATCGCCGACGGAGACAGCTGAGTGTTT---------C--GAG-CGA-A-GC--CTCG---CCCCGGGAGCC----------TCG-CTG-CA-TTACGATTA-G--CTATTTCA---TT-CTT--GCA-TC-A-TATT-----T----T----------A------AATTAAA-----C-----GC-CTTTTCTAA--A---CT-AAAATAG-ATAT--AT-A----T-T----TTTTAAA-T----GGG-AAA-GCATTT-CC--C-CAC-TA-A-GAG--TCAACAAATTACAC-TT--TTAATCTTTA--CT-TTA--TTTTT-CT-A--C-ACATAcg
gi|18 : --------------T---------------A-T----------TTGTAT-CA-CTAGA--TAA-TT-CAGC----ACCAGACACCCAAGGTCGGCTGTCTCCGCAAAGTCGAGTGTCT------------------------C--GAG-CGA-A-GC--CTCG---CATCGATAACGATGAG-A-TGTTG-CTG-CA-TTta
gi|14 : acataaaaaaaattactacttt---------C--GGG-CAA-AAGC--CTGGTGGCATCAATAACAATGAGTA-TATTG-CTTGCAGTCACAGTTG-G----GCCATAACTTT-TTT--GCA-CC-A-TGTA-----T----TAGGAGATTACA------A-----A-----T-----GC-CTTTTC
gi|17 : gcgttatactatattttttaggacgcgtcagagtaaaggtttagtaccagaacactcgagatcggctgtctccgaaatttctttccgacggaagatagcttcaagtatct-TTGCTATTC-T--ATTTTTTT---TT-TTT--ATA-TC-A-T-------------T-----------------------------C-----GC-CTTT-CTAA--A---CT-TAGATAA-ATAT--TT-A----T-T----TTCT-AA-T----TGG-AAA-ACATTTCCC--C-T-C-TA-A-GAA--CCAACAAATTACAC-CT--TTAATC-GTA--C--TTA--TTTTT-CT-A--C-ACATAA---TAGG--TT-CGCAG-A
gi|15 : acgat-A-TGTT-----T----T----------A------A-----A-----TTAAATGC-CTTTTCTAA--T---CT-CAAATAA--TA---AT-T----T-T----TTTTAAC-C----AGA-AAA--CATTTCCC--C--AC-AG-A-GAA--CTAAAAAATTATACCTT--TAAA-CTTTA--CT-T---CTTTTTACT-A--C-ACATAA---TAGT--TT-TGCAG-AAACAC-A-AAACA-ACTTA-C-ACCTTTCATATCATGT--------------A-----------------ACCGAC-CG-ACTTC-TGtg
gi|5 : AA-ATAT--AT-A----T-C----TTTTAAA-T----GGG-AAA-GCATATCCC--T--AC-TA-A-GAA--CCAACAAATAACAC-TT--TTAATCTTTA--CT-T-A-ATTTTT-CT-A--C-TCATAA---GAAG--TT-CGCAA-AAACAC-A-TAACC-ACTTA-T-A--------------T--------------A-----------------ACCTAC-CG-Ctaggccg
gi|20 : caagaaacacattaacgcaagcgtcaaaagaacggccgcaaacccacttgtttcatcatcatatttaacattctactaacattgtacaatatttcaaaaacctttgaaatgaatttttaagggtacaataaatgccttttgttaattccgcaacttcgactttaattgtgtaccaagattcgaaatgcactcccctcccccaataataataatgtttcgaaccctcaacatatggttttacactcaccacttagaaatatacatgaactacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAC-TT--TTAATCTTT----TATTA-CTTTT--CT-AGGCATCATAACATTAGG--TTTCGCAG-AAACAT-ACTAACCGACTTAGT-A-------------TT--------------TTCTATATCATTAA----ACCGAC-CGCCTTTC-TGc
gi|21 : gtAGG--TT-CGCAG-AAACAC-A-TAACC-ACTTT-A-A-------------GT--------------TTTGATATCATATA----ACCGAC-CG-CCATC-TGGCGGCtgg
gi|24 : -AAATGC-A-GAGCC-ACTTA-A-A-------------AT--------------A-----------------ACCGAC-CG-CTTCC-TGGCGGCcggtaa
gi|23 : C-A-TAATC-ATATA-T-A-----------------------------------------------ACCGAC-CG-CCTTC-TGGTGGCctgta
gi|26 : acttacacctttTA-T-A-----------------------------------------------ACCGAC-CG-CCTTC-TGGCGGCccggta
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): ATTTACCACTTACAGTTTTCATATCATATAACCGACCGCCTACTGTCGGCCGGT
Unaligned ( gi|25 ): GAACTACTGGAAAAATACATGAAAAGTTGCGTTTTACTTTTATT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777777 1111111111 111 22222222222 33333333333 2222222222222222222 33333333333 111111 1111 99999999999999999999999999999999999999999999999999999 11111 2222222222222222222222222222222222 44444444444444444444444444444444444444444444444 111 1 111 111 00000000000000000000000000000000000000000000000
lowQualScore : 3 3 55 4 4 55 3 3 777777777777777777777777777777777777777777777 3 4444444444 44 3 7777 555 6 55 3 44 3 3 3 333 3 3 3 3 3 1 666 55 3 88 00000000000 999 44 55 3 33333333333 3 3 1111111111111111111 99999999999 3 999 3 6 3 7777 2 222222 44 3 3 6 9999 6666 8 3 3 3 3 11111111111111111111111111111111111111111111111111111 3 3 3 44 3 3 9999 3 3 00000 3 44 555 3333333333333333333333333333333333 55 666 22 44 77 3 8888888 555 1 5 1 4444 3 3 3 3 3 88 666 88 3 3 3 3 00000000000000000000000000000000000000000000000 3 55 88 88888 3 44 3 99999999999 3 7777 000 0 000 3 3 3 3 44 3 3 44 3 3 3 555 44 44 000 77 3 3 6 3 2 2 99999999999999999999999999999999999999999999999 2 2 3
lowQualScore : . . .. . . .. . . ............................................. . .......... .. . .... ... . .. . .. . . . ... . . . . . . ... .. . .. ........... ... .. .. . ........... . . ................... ........... . ... . . . .... . ...... .. . . . .... .... . . . . . ..................................................... . . . .. . . .... . . ..... . .. ... .................................. .. ... .. .. .. . ....... ... . . . .... . . . . . .. ... .. . . . . ............................................... . .. .. ..... . .. . ........... . .... ... . ... . . . . .. . . .. . . . ... .. .. ... .. . . . . . . ............................................... . . .
lowQualScore : 6 6 00 0 0 55 3 3 111111111111111111111111111111111111111111111 3 2222222222 66 3 1111 888 7 88 3 66 3 3 3 222 3 3 3 3 3 2 000 11 3 33 22222222222 000 66 00 6 33333333333 6 6 9999999999999999999 88888888888 3 222 3 7 3 6666 2 777777 22 3 3 7 6666 4444 8 3 3 3 3 55555555555555555555555555555555555555555555555555555 3 3 3 66 1 1 9999 1 1 11111 1 11 111 6666666666666666666666666666666666 55 444 00 66 77 3 2222222 888 2 2 1 5555 6 6 6 6 6 66 444 66 6 6 3 3 55555555555555555555555555555555555555555555555 3 00 66 33333 3 66 3 33333333333 3 1111 222 8 555 3 3 3 3 66 3 1 22 1 3 3 888 66 88 000 99 1 1 2 1 9 9 44444444444444444444444444444444444444444444444 9 9 1
consensus : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAA--C-GTAT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-CACCC-GA-GGTC-GGC--TGTTTCCGCG----AANTN-----CC--GACGGA-GACAGC--CGAGTG--TCT-CGAG-CGA-A-GC--CTCG---CATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AA-----A-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
Reference ( family-1712 ) : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAA--C-GNAT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--GC-CA-GN-CGNCC-GN-GGNN-GNN--TCTNNCNNCG----AANTN-----CC--GNCGGN-GACAGC--CGANNG--TCN-CGAG-CGA-A-GC--CTCG---CATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AA-----A-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|1 : AAACACGCTTGACGGCAGC-GT--CAA---GGACGGCCGC-AAACCGCCACTTTT-TTC-ATC--------------A--------------AGAGAAATTTTTAA-CA-TGTTTC---------ATTGGCAATGAT-CATA----TT---TGACAT-TCTAGCTCAA--CAT-TG-TA-CAATATTTA--AAA-AACGCTTTGAA--T-AATTTTTAA-GG-TACAGAACTTTTTCTGGCG-TAATAAT-A-----AATGC---TTAGTTAATAAC--GGAAAATTTCGA-CT-TT--ATA---TT-GTTTA-CCAAG-TTCGAAA--GCAGCCCCCCCCCCTCCCCCCTCCCCCCGATA-A-----TAATAATAATGTTTTTGA---A-CCGC-TCAA--C-GTATTGGCA------ACA-C------CTTAGAA--TATAC-ATGAAGCTTTTA-TC-GAAA-ATAAA-T-GTAATAA----------G--------------TTTGCGTTTTACATTTAT----------TG-GTATTCAGCGCGAAATAATT-T-AGTTGGCGCA-GAACAACC-GA-GGGTCGGC--TGATCTCCCG----CATTA-----TCCAACCGGA-GACAGT--CGAGTGGGTCT-CGAGGCGAGA-GG--CTCG---CATCGA-AGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TTGGCA-TC-ATTGT------T-----TTAAAT----------AA-----A-----C-----GCGCTTTTTCAA--ACTA-AAAAT-----TA-ATAT--AT-AATTTT-T----TTTTAAA-TGGG----AAAGG-CATTT-CCC--CA-CTTA-A-GAAAGCCA-GCAAATTACACTTGCTAATCTTTAGTCT-TTT-TTTT-TCT---A--CA-CATAA---TAGGCTTTCGCAG---ACAC-A-TAACC-ACTTA-T-A-------------GT--------------TTTTCATATCATATATTAACCGACGCGCC-TTCTTGGCGG
gi|10 : aagAAACACA-TTGACGCAAAC-AT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATCGAGAGAAATTTGTAA--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CACAATTTC---AA-AAC-CTTCGAA-ATAAATGTTTAA-GAGTAGA-AACTTTT-CTG-CG-TAG-AAT-A-----A------------TAA-TCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCATGATTCG----------------------CCCCCCCCCCA-----A-----TAATAATAATGTTTT-GA---G-CC------------------------------CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-CG-AA----------GTTGCGTTTTACTTTT---------------AT----------TG-GCAT-CA-CGCGA--TAATT-T-AGT--AC-CA-GA-CACCC-GA-GGAC-GGC--TGTTTCCGCAAATTAATTT-----TC--AACGGA-GACAGC--CGAGTG--TCT-CGAT-CGA-A-GC--CTAG---CATTAATAGCAATGA
gi|11 : CA-TTGACGCAGGC-GT--CAAAA-GAACTGTTGC-AAACC--CACTTGT-TTC-ATC--------------ATGAGAAATTTGTAAA--------------CA-TGTTTT---------AT--GCAATAAG-CAAA----TT---TAACAT-TCTA-TT-AA--CAT-TG-TA-CAATATTT---GAC-AAC-CTTTGAA-ATGTATTTTTAG-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A--ACGATTTTGTTAATTCC--GCAA--AATCGA-CT-----------TT-GTTTG-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCTC-----C-----CAATAATGATGTTTT-GA---A-CT-C-TCAA--C-GAAT--G-----------------CACTGAAAA-ATATGC-ATG-----------------CATACA-T-G-AA-AA----------G--------------T---------------TG----------CG-TTAT-CA-CGCGG--TATTT-T-AGC--AC-CA-GA-CACCC-GA-GGTC-GGC--T
gi|12 : tAAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------AGAGAAATTTGTAAACA-TGTTTCTATTGTTTCAT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTCAAAAA-AAC-CTATGAA-ATGAAATTTTAA-GGGTAAA-AACGTTT-CTA-CG-TAA-AAT-AAATTGA-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-AAATTT-GTTTA--CAAGATTCGAAATAGCA--------------ACCCCCCCCCC-----AATAATTAATAATAAGATTAT-AATTTA-CCAC-TCAGGTT-AAAT--CCA-TTT--Agtc
gi|13 : acaagTT--ACA-CTGAACACGTAGAA-ATATGC-A-------------------CATACA-T-G-AA-CATTT-------A--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGA--AT-CA-GA-CACCC-GA-GGTC-GTC--TGTCTCCGCA----AATCG-----CC--GACGGA-GACAGC--TGAGTG--TTT-CGAG-CGA-A-GC--CTCG---CCCCGGGAGCC----------TC-G-C-TGCA-TTACGATTA-GC--TATTTCA---TTC--TT-GCA-TC-A-TAT------T-----T----T----------AAATTAAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AG-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTT-CCC--CA-C-TA-A-GAG--TCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAtca
gi|14 : TT-T-AGT--AC-CA-GAACACTC-GA-GATC-GG----CTGTCTCCG----AAATTTCTTTCC--GACGGAAGATAGCTTCAAGTA--TCT-CGGG-CAA-AAGC--CTGGTGGCATCAATAACAATGAGTAT-ATT-G-CTTGCAGTCACAGTTG-G----GCCATAACTTTT--TT-GCA-CC-A-TGT------A-----T----TAGGAGATTACAA-----A-----T-----GC-CTTTTCta
gi|15 : gcgttatactatattttttaggacgcgtcagagtaaagg-A-TGT------T-----T----T----------AA-----A-----TTAAATGC-CTTTTCTAA--TCT--CAAAT-----AA--TA---AT-T----T-T----TTTTAAC-CAGA----AAA---CATTTCCCC---A-C-AG-A-GAA--CTA-AAAAATTATACCT-TTAAACTTTA--CT-TCT-TTTT-ACT---A--CA-CATAA---TAGT--TTTGCAG-AAACAC-A-AAACA-ACTTA-C-ACCTTTCATATCATGT--------------A-----------------ACCGAC-CGAC-TTC-TG
gi|16 : AATACA-TTGACGCAAGC-GT--CAAGA-GAACGGCCGC-AAACC--CACT--------AT---------------------------------------------CA-TGCTTT---------AT--GCAATAAT-CATA----TT---TAAC-----------------------------ATTTC---AA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AA---------------------TAATTCC--GCAT--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CGCCCCtaggccg
gi|17 : ACGATTT-GC--TATTCTA---TTT--TT-----T----TTT------T-----T----T----------AT-----ATCATTC-----GC-CTTT-CTAA--ACT--TAGAT-----AA-ATAT--TT-A----T-T----TTCTAA--TTGG----AAA-A-CATTTCCCC--T--C-TA-A-GAA--CCA-ACAAATTACACCT-TTAATC-GTA--C--TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-A
gi|18 : --------------T---------------AT----------TT-GTAT-CA-CTAGA--TAATT-C-AGC--AC-CA-GA-CACCC-AA-GGTC-GGC--TGTCTCCGCA----AAGT-------------------------CGAGTG--TCT-CGAG-CGA-A-GC--CTCG---CATCGATAACGATGAG-AT-GTT-G-C-TGCA-TTtg
gi|19 : acataaaaaaaattactacttt-TTC-GTA--------------A--------------A--------------CA-TGTTTA---------AT--GCAATAAT-CATA----TT---TAACAT-TCTG-CT-CA--CAT-TG-TA-CAATGTTTC---AA-AAT-CTTTGAA-ATGAGTATTTAA-GGATACA-AACTT----------TA------A-----A-TGC-C-TTTGTTAATTCC--G
gi|2 : gaaaAAACACA-TTGATGCAAAT-GT--CAAAA-GAACGGCCGC--AACC--CAATTGTATTT-TTA--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCT--CT-AA--CAT-TG-TA-CAATATTTC---AA-AAC-CTTTG-A-ATGAATTTTTAA-GGGTACA-AATTTTT-CTG-CG-TAG-AATAA-----A-TGC-CTTTTGTTATATCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCC--------------CCCCCCCCCCCCCCCAA-----TAATAATAATGGTTT-GA---ACCC-C-TCAA--C-GTAT--GCA-TTT--ACA-CTCAAC-CTTA-AA-ATATAC-ATGAA----CTACTC-GAAA---ACA-T-G-AA-AA----------G--------------TTGC------------GTTTTACTTTTATG-GTAG-CA-CGCGA--TAATT-T-TG------CN-NN-NNNNN-NN-NNNN-NNN--NNNNNNNNNN----NNNNN-----NN--NNNNNN-NNNNNN--NNNNNN--NNN-NNNN-NNN-N-NN--NNNN---NNNNGATA-------------TT-G-C-TGCA-TTGCGATTG-GCTGTGTTTTA----TC--TT-GCA-TC-A-TGC------TTTGAAT----T----------AA-----A-----T-----GC-CTTTTTT-A--ACT--AAAAT-----TA-ATAT--AT-A----TATAATATTTTAAG-TGGG-----AA-G-CATGT-CCC--CA-C-TA-A-GAA--CC-----AATTA---------------A--CT-TTA-TTTT-TCT---T--CA-CATA-------G--TTCGCAGAAAACAC-ATTAACC-ACTTA-C-A-------------GT--------------TTTCATAATCATATA---ACCGAC-CGCC-CTC-TGGTG
gi|20 : aggACTT-TTAATCTTT----TATTA-CTTT-TCT---AGGCATCATAACATTAGGT-TTCGCAG-AAACAT-ACTAACCGACTTAGT-A-------------TT--------------TTCTATATCATTAA----ACCGAC-CGCCTTTC-TGccagccgg
gi|21 : gtAGG--TTCGCAG-AAACAC-A-TAACC-ACTTT-A-A-------------GT--------------TTTGATATCATATA----ACCGAC-CGCC-ATC-TGGCGGCtgg
gi|23 : C-A-TAATC-ATATA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGTGGCcggtaa
gi|24 : acttacaccttt-AAATGC-A-GAGCC-ACTTA-A-A-------------AT--------------A-----------------ACCGAC-CGCT-TCC-TGGCGGCccggta
gi|25 : GAA----CTACTG-GAAAAATACA-T-G-AA-AA----------G--------------T---------------ctgta
gi|26 : TA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGCGGCtgcgttttacttttatt
gi|27 : tagttttcatatcaAAACACA-TTGATGCAAGC-GT--CAAAcggta
gi|3 : aatatcacaagAAACACA-TTGACGCAAGC-GT--CAAAA-GAACAACCGC-AAACT--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTC---------AT--GTAATAAT-CATAATTATT---TAACAT-TCTA-----A--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTCT-CTG-CG-TAA-AAT-AT----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTT-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----------TAATAATAATGTTTT-GA---A-CC-C-TCAA--C-GAAT--GCA-TTT--ACA-CTCAACGCTCAGAA-ATATAC-ATGAG----CTA----GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--NN-NN-NN-NNNNN-NN-NNNN-NNN--NNNNNNNNNN----NNNNN-----NN--NNNNNN-NNNNNN--NNNNNN--NNN-CGAG-CGA-A-GC--CTCG---CATCGATAGCAATGAG-AT-ATT-G-C-TCCA-TTGCGATTG-GA--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AA-----A-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CGTTTCCCC--CA-C-TA-A-GAA--CCA-ACAATTTACACTT-TAAATCTTTA--CT-TTACTTTT-TCT---A--CC-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCT-TTC-TGGCGGC
gi|4 : AAACACA-TTAAC-CAAGCCGT--CAAAACGAACGGCCGCGAAACC--CACTTGT-TT--ATC--------------A----------------------------------------------------------T-CATA----TT---CTACAT-TCTA-CT-AA--CAT-TG-TAACAATATTTC--AACCAAC-CTTTGAATATGAATTTTTAA-GGGTACA-A--------------TAA-AGT----------GC-CTTTTGT-AATTCC--GCAA--CTTCGAACTCTT--A-A---TTCGTGTA-CCAAAGATCGAAAT-G-A--------------CTCCCCTCCCC-----AA----TAATAATAATGTTTC-GAT--A-CC-C-TCAA--CCATAT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAA-TTGAA----CTAC-------------------------------------------------------------------------------GTAT-CA-CGCGA--TAATTCT-AGC--TC-CA-GA-AACCC-GAAGGTC-GGCCTTGTTTCCGCA----AATCT-----CC--GACGGA-GACTGT--CGAATG--TCT--GAG-CGA-C-CCTTCTCG---CATCGATAGCA-TGAG-ATTATT-G-C-TGCA-TTACGATTG-GCC-TGTTTTA---TTCC-TT-GCA-TCTA-TGT------T-----TAAATT----------AA-----A-----A-----TG-CTTTTCTAA--ACT--AAAAT-----AA-AT-T--AT-A----T-C----TTTTAAA-TGGG----AAA-AACATATCCCT--AAAC-TA-C-GAA--CCCCACAAAT-AAACTT-TTTATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCTCGC-AAAAAC-A-TAACC-ACTTA-T-A-----------------------------T-----------------AACTA--CG-C-TGC-TGGCGGC
gi|5 : gAAACACA-TTAACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A----------------------------------------------------------T-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-A--------------TA------A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTGTA-CCAAGATTCGAAAT-GCA--------------CTCCCCTCCCCCA---A-----TAATAATAATGTTTC-GA---A-CC-C-TCAA--C-ATAT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAC-ATGAA----CTACc
gi|5 : caag-----AA-ATAT--AT-A----T-C----TTTTAAA-TGGG----AAA-G-CATATCCCT---A-C-TA-A-GAA--CCA-ACAAATAACACTT-TTAATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCGCAA-AAACAC-A-TAACC-ACTTA-T-A--------------T--------------A-----------------ACCTAC-CGCC-gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatatatcttttaaatgggaaagcatatccctactaagaaccaacaaataacacttttaatctttacttaatttttctactcataagaagttcgcaaaaacacataaccacttatataacctaccgcc
gi|6 : caagaaacacattaacgcaagcgtcaaaagaacggccgcaaacccacttgtttcatcatcatatttaacattctactaacattgtacaatatttcaaaaacctttgaaatgaatttttaagggtacaataaatgccttttgttaattccgcaacttcgactttaattgtgtaccaagattcgaaatgcactcccctcccccaataataataatgtttcgaaccctcaacatatggttttacactcaccacttagaaatatacatgaactacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTTGT-TTC-AT---------------A--------------A--------------CAGTGTTTT---------AG--TTAATAAT-CATA----TTATTTAACATATCG---T-AA--CAT-TGATA-CA-TATTTC--AAA-AAC--TTTGAA-AGCAATTA--AA-GGGTACA---CTTCT-CT--CG-TAA-AAG-T-----A-TGC-CTTTTGT-AATACC--G-AA--CTT-GA-CT-TTTTA-A---TT-GTTT--TCAAGATTCGAAATTGCA--------------CCCCCCCCCC------------TAATAATAATGTTTT-GA---A-CC-C-TCAA----GAAT--G-A-TCT--ACA-CTC-ACGCTCAG---ATATACAATGAG----CTA-----GAACATTC--T-G-AA-AA----------G--------------T---------------AT----------TG-GTAG-CA-CGCGA--TAATT-T--GC--AC-----A-CAACCTGA-GGTC-GG----CTTGTTCCG----AAATC-----TC--GACGGA-GACAAG--CGAGTG--TCT-CGAG-CGA-A-G----TCG---CATC-ATAGCAATG-G-AT-ATT-GAC-TCCC-ATGCGATTGTGG--TGTTTTA---TTC--TT-GCATTC-A-TGT------T-----T----T----------AA-----A-----C-----GC-CTTTTCTAGATACT--AAAAT-----AA-ATATCCATCA----T-T----TTT--AA-TGGG----AAATG-CGTTT-CCC--CA-C-TA-A-G-A--CCA-ACAATTT--ACTT-TAAATCTTT----C-TTA-CTTTGTCT---A--C-----AA---TAGG--TTCGCAG-AAA-AC-A-TAACC-ATT---T-A-------------G---------------T-----------------ACCGAC---CT-TTC-TGGC
gi|7 : CA-TTGACGCAAGC-GTTTCAAAA-TT------------CC--CACTGTT-TTCTGTA--------------A--------------G--------------CA-T--TTT---------AT--GCA-TAATTCATA----TT----AACATCTCTA-CT-AAAACATCTG-TA-CAATATTTC--AAA---C-CTTTGAA-ATGAATTT--AATAGGTACA-AACTTT--CTG-CGGTAG-AAT-A-----AATGC--TTTTGTTAATTCCCGGCAA--CTTCGA-CT-TT-----------GTTTAACCAA--TTTTAAA--G---------------------------------------AATAATAATGTTT--GA---A-CC-C-TCAA--C-GTATT-GCA-TTTTTACAGCTCAACACAAGGAA-A-ATACGATGAAA---CTACTCCGAAA-ACACA-TTG-AA-AAAAATGTTATGG--------------T---------------AT----------TTTATAT-CA-CGTGA--TAATT-TTAGC--AC-CCTGA-CACCC-GA-AGTC-G-----CTGTCTCCG----CAAT------CC--GACGGA-GTCAAT--CGAGTG--TCG-C----CGA-G---------------CGA-AGCC----------TC-G-C---CA-T--CGAT-A-GC--TGTTTTA---TT-----------------------------------------------------------------GC-CTTTTTCAA--ACTCTAAAATTTTAAAA-ATAT--TT-A----T-T----GCTAAAA-TGGGGGGGAAA-G-CATTCCCCCGCCA-C-TA-A-GAA--CCA-ATAAATTACACTT-TT--TCTTTA--CT-
gi|8 : nn-----TGATAATAATGTTTT-GA---A-CC-C-TCAG--C-GTAT--GCAATTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------TTGCATTTTACTTTT-AT----------TG-GTAT-CA-CGCGA--TAANN-N-NNN--NN-NN-NN-NNNNN-NN-NNNN-NNN--NNNNNNNNNN----NNNNN-----NN--NNNNNN-NNNNNN--NNNNNN--NNNNCGAG-CGA-A-GC--CTCG---CATCGGTAGCAATCAG-AG-ATT-G-T-TGCA-TTACGATTG-GC--TGTTT-A---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AA-----ATTAAAC-----GC-CTTTTCTAA--ACT------------------------------------TTTTAAA-TGGG----AAA-G-CATTTCCCC---A-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATATTTA--CT-TTA-TTTT-TCT---A--CA-CGTAA---TAGG--TTCGCAG-AAACA--------C-ACTTA-T-A-------------GT--------------A-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|9 : ataaatgttgcttggtcatcattttcatatggcgattcctcgtatttagttcacggatttcatattTTT-GA---A-CC-AATCAA--A-GTATT-GCA-TTT--ACA-CTCAACACTTAGAATATATAT-ATGAA----CTACTG-GAAAAATACAAT-G-AA-------------G--------------TTGCGTTTTTACTTT-AT----------TG-GTAT-GA-CGCGA--TAATT-T-AGC--AC-AA-GA-C-ACC-GA-GTTC-GGN--NNNNNNNNNN----NNNNN-----NN--NNNNNN-NNNNNN--NNNNNN--NNNNCGAG-TTA---GT--CTCG---TATCGATAGCAATGAG-AT-ATTGG-C-TGCA--TACGATTG-CC--TG-CTTA---TTCTTTT-GCA-TC-A-TATTTTAAAT-----T----T----------AA-----A-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AATATAT--AT-A----TAT----ATTTAAATTGGG----AAAGG-CATTT-CCC--CA-C-TATATGAA--CCA-ACAAATTACAC-T-TTAA-CTTTA--CT-TTA-TTTT-TTTCTAA--CA-CACAAT--TAGG--TTCGCAG-ACACACTA-TTAAC-ACTTT-TAA-------------GTTTTGATATCATATAT-----------------ACCGAC-CGCA-TTC-TGGCGGCcggtaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTTACCACTTACAGTTTTCATATCATATAACCGACCGCCTACTGTCGGCCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777777 1111111111 111 22222222222 33333333333 2222222222222222222 33333333333 111111 1111 99999999999999999999999999999999999999999999999999999 111111111111111 444444444444444444444444444444444444444444 111 1 111 111 00000000000000000000000000000000000000000000000
lowQualScore : 3 3 55 4 4 55 3 3 777777777777777777777777777777777777777777777 3 4444444444 44 3 7777 555 6 55 3 44 3 3 3 333 3 3 3 3 3 1 666 55 3 88 00000000000 999 44 55 3 33333333333 3 3 1111111111111111111 99999999999 3 999 3 6 3 5555555 222222 44 3 3 6 9999 6666 8 3 3 3 3 11111111111111111111111111111111111111111111111111111 3 3 3 44 3 3 444 3 3 6 3 3 3 3 44 3 0 999999999999999 3 3 666 44 3 3 3 3 6666666 1 33 3 3 3 3 3 3 3 88 666 88 3 3 3 3 000000000000000000000000000000000000000000 3 55 88 88888 3 44 3 99999999999 3 7777 000 0 000 3 3 3 3 44 3 3 44 3 3 3 555 44 44 000 77 3 3 6 3 2 2 99999999999999999999999999999999999999999999999 2 2 3
lowQualScore : . . .. . . .. . . ............................................. . .......... .. . .... ... . .. . .. . . . ... . . . . . . ... .. . .. ........... ... .. .. . ........... . . ................... ........... . ... . . . ....... ...... .. . . . .... .... . . . . . ..................................................... . . . .. . . ... . . . . . . . .. . . ............... . . ... .. . . . . ....... . .. . . . . . . . .. ... .. . . . . .......................................... . .. .. ..... . .. . ........... . .... ... . ... . . . . .. . . .. . . . ... .. .. ... .. . . . . . . ............................................... . . .
lowQualScore : 6 6 00 0 0 55 3 3 111111111111111111111111111111111111111111111 3 2222222222 66 3 1111 888 7 88 3 66 3 3 3 222 3 3 3 3 3 2 000 11 3 33 22222222222 000 66 00 6 33333333333 6 6 9999999999999999999 88888888888 3 222 3 7 3 9999999 777777 22 3 3 7 6666 4444 8 3 3 3 3 55555555555555555555555555555555555555555555555555555 3 3 3 66 1 1 555 1 1 2 1 1 1 1 22 1 6 222222222222222 3 3 444 66 3 3 3 3 1111111 2 55 6 6 6 6 6 6 6 66 444 66 6 6 3 3 555555555555555555555555555555555555555555 3 00 66 33333 3 66 3 33333333333 3 1111 222 8 555 3 3 3 3 66 3 1 22 1 3 3 888 66 88 000 99 1 1 2 1 9 9 44444444444444444444444444444444444444444444444 9 9 1
consensus : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCCGCA----AA----TTT-CCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
Reference ( family-1712 ) : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TTTCCGCG----AA----NTN-CCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|1 : AAACACGCTTGACGGCAGC-GT--CAA---GGACGGCCGC-AAACCGCCACTTTT-TTC-ATC--------------A--------------AGAGAAATTTTTAA-CA-TGTTTC---------ATTGGCAATGAT-CATA----TT---TGACAT-TCTAGCTCAA--CAT-TG-TA-CAATATTTA--AAA-AACGCTTTGAA--T-AATTTTTAA-GG-TACAGAACTTTTTCTGGCG-TAATAAT-A-----AATGC---TTAGTTAATAAC--GGAAAATTTCGA-CT-TT--ATA---TT-GTTTA-CCAAG-TTCGAAA--GCAGCCCCCCCCCCTCCCCCCTCCCCCCGATA-A-----TAATAATAATGTTTTTGA---A-CCGC-TCAAC-GT---ATTGGCA------ACA-C------CTTAGAA--TATAC-ATGAAGCTTTTA-TC-GAAA-ATAAA-T-GTAATAA----------G--------------TTTGCGTTTTACATTTAT----------TG-GTATTCAGCGCGAAATAATT-T-AGTTGGCGCA-GAAC-AACCGA-GGGTCGG-C--TGATCTCC-CG----CA----TTATCCAACCGG-AGACAGT--CGAGTGGGTCT-CGAGGC-GAGAGG--C---TCGCATCGA-AGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TTGGCA-TC-ATTGT------T-----TTAAAT----------AAA-----C-----GCGCTTTTTCAA--ACTA-AAAAT-----TA-ATAT--AT-AATTTT-T----TTTTAAA-TGGG----AAAGG-CATTT-CCC--CA-CTTA-A-GAAAGCCA-GCAAATTACACTTGCTAATCTTTAGTCT-TTT-TTTT-TCT---A--CA-CATAA---TAGGCTTTCGCAG---ACAC-A-TAACC-ACTTA-T-A-------------GT--------------TTTTCATATCATATATTAACCGACGCGCC-TTCTTGGCGG
gi|10 : aagAAACACA-TTGACGCAAAC-AT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATCGAGAGAAATTTGTAA--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CACAATTTC---AA-AAC-CTTCGAA-ATAAATGTTTAA-GAGTAGA-AACTTTT-CTG-CG-TAG-AAT-A-----A------------TAA-TCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCATGATTCG----------------------CCCCCCCCCCA-----A-----TAATAATAATGTTTT-GA---G-CC-------------------------------CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-CG-AA----------GTTGCGTTTTACTTTT---------------AT----------TG-GCAT-CA-CGCGA--TAATT-T-AGT--AC-CA-GA-C-ACCCGA-GG-ACGG-C--TG-TTTCCGCAAATTAA----TTT-TCAAC-GG-AGACAGC--CGAGTG--TCT-CGAT-C-GA-AGC--C---TAGCATTAATAGCAATGA
gi|11 : CA-TTGACGCAGGC-GT--CAAAA-GAACTGTTGC-AAACC--CACTTGT-TTC-ATC--------------ATGAGAAATTTGTAAA--------------CA-TGTTTT---------AT--GCAATAAG-CAAA----TT---TAACAT-TCTA-TT-AA--CAT-TG-TA-CAATATTT---GAC-AAC-CTTTGAA-ATGTATTTTTAG-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A--ACGATTTTGTTAATTCC--GCAA--AATCGA-CT-----------TT-GTTTG-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCTC-----C-----CAATAATGATGTTTT-GA---A-CT-C-TCAAC-GA---AT--G-----------------CACTGAAAA-ATATGC-ATG-----------------CATACA-T-G-AA-AA----------G--------------T---------------TG----------CG-TTAT-CA-CGCGG--TATTT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-T
gi|12 : tAAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------AGAGAAATTTGTAAACA-TGTTTCTATTGTTTCAT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTCAAAAA-AAC-CTATGAA-ATGAAATTTTAA-GGGTAAA-AACGTTT-CTA-CG-TAA-AAT-AAATTGA-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-AAATTT-GTTTA--CAAGATTCGAAATAGCA--------------ACCCCCCCCCC-----AATAATTAATAATAAGATTAT-AATTTA-CCAC-TCAG--GTTAAAT--CCA-TTT--Ac
gi|13 : acaagTT--ACA-CTGAACACGTAGAA-ATATGC-A-------------------CATACA-T-G-AA-CATTT-------A--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGA--AT-CA-GA-C-ACCCGA-GG-TCGT-C--TG-TCTCCGCA----AA----TCG-CCGAC-GG-AGACAGC--TGAGTG--TTT-CGAG-C-GA-AGC--C---TCGCCCCGGGAGC----------CTC-G-C-TGCA-TTACGATTA-GC--TATTTCA---TTC--TT-GCA-TC-A-TAT------TTTAAAT----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AG-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTT-CCC--CA-C-TA-A-GAG--TCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAtca
gi|14 : TT-T-AGT--AC-CA-GAAC-ACTCGA-GA-TCGG-C--TG-TCTCCG-A----AATTTCTTT-CCGAC-GGAAGATAGCTTCAAGTA--TCT-CGGG-CAAA-AGC--CTGGTGGCATCAATAACAATGAGTAT-ATT-G-CTTGCAGTCACAGTTG-G----GCCATAACTTTT--TT-GCA-CC-A-TGT------A-----T----TAGGAGATTACAAA-----T-----GC-CTTTTCta
gi|15 : gcgttatactatattttttaggacgcgtcagagtaaagg-A-TGT------T-----T----T----------AAA-----TTAAATGC-CTTTTCTAA--TCT--CAAAT-----AA--TA---AT-T----T-T----TTTTAAC-CAGA----AAA---CATTTCCCC---A-C-AG-A-GAA--CTA-AAAAATTATACCT-TTAAACTTTA--CT-TCT-TTTT-ACT---A--CA-CATAA---TAGT--TTTGCAG-AAACAC-A-AAACA-ACTTA-C-ACCTTTCATATCATGT--------------A-----------------ACCGAC-CGAC-TTC-TG
gi|16 : AATACA-TTGACGCAAGC-GT--CAAGA-GAACGGCCGC-AAACC--CACT--------AT---------------------------------------------CA-TGCTTT---------AT--GCAATAAT-CATA----TT---TAAC-----------------------------ATTTC---AA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AA---------------------TAATTCC--GCAT--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CGCCCCtaggccg
gi|17 : ACGATTT-GC--TATTCTA---TTT--TT-----T----TTT------T-----T----T----------ATATCATTC-----GC-CTTT-CTAA--ACT--TAGAT-----AA-ATAT--TT-A----T-T----TTCTAA--TTGG----AAA-A-CATTTCCCC--T--C-TA-A-GAA--CCA-ACAAATTACACCT-TTAATC-GTA--C--TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-A
gi|18 : --------------T---------------AT----------TT-GTAT-CA-CTAGA--TAATT-C-AGC--AC-CA-GA-C-ACCCAA-GG-TCGG-C--TG-TCTCCGCA----AA----GT--------------------CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAACGATGAG-AT-GTT-G-C-TGCA-TTtg
gi|19 : acataaaaaaaattactacttt-TTC-GTA--------------A--------------A--------------CA-TGTTTA---------AT--GCAATAAT-CATA----TT---TAACAT-TCTG-CT-CA--CAT-TG-TA-CAATGTTTC---AA-AAT-CTTTGAA-ATGAGTATTTAA-GGATACA-AACTT----------TA------A-----A-TGC-C-TTTGTTAATTCC--G
gi|2 : gaaaAAACACA-TTGATGCAAAT-GT--CAAAA-GAACGGCCGC--AACC--CAATTGTATTT-TTA--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCT--CT-AA--CAT-TG-TA-CAATATTTC---AA-AAC-CTTTG-A-ATGAATTTTTAA-GGGTACA-AATTTTT-CTG-CG-TAG-AATAA-----A-TGC-CTTTTGTTATATCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCC--------------CCCCCCCCCCCCCCCAA-----TAATAATAATGGTTT-GA---ACCC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAAC-CTTA-AA-ATATAC-ATGAA----CTACTC-GAAA---ACA-T-G-AA-AA----------G--------------TTGC------------GTTTTACTTTTATG-GTAG-CA-CGCGA--TAATT-T-TG------CN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNNNNN----NN----NNN-NNNNN-NN-NNNNNNN--NNNNNN--NNN-NNNN-N-NN-NNN--N---NNNNNNNGATA-------------TT-G-C-TGCA-TTGCGATTG-GCTGTGTTTTA----TC--TT-GCA-TC-A-TGC------TTTGAAT----T----------AAA-----T-----GC-CTTTTTT-A--ACT--AAAAT-----TA-ATAT--AT-A----TATAATATTTTAAG-TGGG-----AA-G-CATGT-CCC--CA-C-TA-A-GAA--CC-----AATTA---------------A--CT-TTA-TTTT-TCT---T--CA-CATA-------G--TTCGCAGAAAACAC-ATTAACC-ACTTA-C-A-------------GT--------------TTTCATAATCATATA---ACCGAC-CGCC-CTC-TGGTG
gi|20 : aggACTT-TTAATCTTT----TATTA-CTTT-TCT---AGGCATCATAACATTAGGT-TTCGCAG-AAACAT-ACTAACCGACTTAGT-A-------------TT--------------TTCTATATCATTAA----ACCGAC-CGCCTTTC-TGccagccgg
gi|21 : gtAGG--TTCGCAG-AAACAC-A-TAACC-ACTTT-A-A-------------GT--------------TTTGATATCATATA----ACCGAC-CGCC-ATC-TGGCGGCtgg
gi|23 : C-A-TAATC-ATATA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGTGGCcggtaa
gi|24 : acttacaccttt-AAATGC-A-GAGCC-ACTTA-A-A-------------AT--------------A-----------------ACCGAC-CGCT-TCC-TGGCGGCccggta
gi|25 : GAA----CTACTG-GAAAAATACA-T-G-AA-AA----------G--------------T---------------ctgta
gi|26 : TA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGCGGCtgcgttttacttttatt
gi|27 : tagttttcatatcaAAACACA-TTGATGCAAGC-GT--CAAAcggta
gi|3 : aatatcacaagAAACACA-TTGACGCAAGC-GT--CAAAA-GAACAACCGC-AAACT--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTC---------AT--GTAATAAT-CATAATTATT---TAACAT-TCTA-----A--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTCT-CTG-CG-TAA-AAT-AT----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTT-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----------TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GA---AT--GCA-TTT--ACA-CTCAACGCTCAGAA-ATATAC-ATGAG----CTA----GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNNNNN----NN----NNN-NNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TCCA-TTGCGATTG-GA--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CGTTTCCCC--CA-C-TA-A-GAA--CCA-ACAATTTACACTT-TAAATCTTTA--CT-TTACTTTT-TCT---A--CC-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCT-TTC-TGGCGGC
gi|4 : AAACACA-TTAAC-CAAGCCGT--CAAAACGAACGGCCGCGAAACC--CACTTGT-TT--ATC--------------A----------------------------------------------------------T-CATA----TT---CTACAT-TCTA-CT-AA--CAT-TG-TAACAATATTTC--AACCAAC-CTTTGAATATGAATTTTTAA-GGGTACA-A--------------TAA-AGT----------GC-CTTTTGT-AATTCC--GCAA--CTTCGAACTCTT--A-A---TTCGTGTA-CCAAAGATCGAAAT-G-A--------------CTCCCCTCCCC-----AA----TAATAATAATGTTTC-GAT--A-CC-C-TCAACCAT---AT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAA-TTGAA----CTAC-------------------------------------------------------------------------------GTAT-CA-CGCGA--TAATTCT-AGC--TC-CA-GA-A-ACCCGAAGG-TCGG-CCTTG-TTTCCGCA----AA----TCT-CCGAC-GG-AGACTGT--CGAATG--TCT--GAG-C-GA-CCCTTC---TCGCATCGATAGCA-TGAG-ATTATT-G-C-TGCA-TTACGATTG-GCC-TGTTTTA---TTCC-TT-GCA-TCTA-TGT------T-----TAAATT----------AAA-----A-----TG-CTTTTCTAA--ACT--AAAAT-----AA-AT-T--AT-A----T-C----TTTTAAA-TGGG----AAA-AACATATCCCT--AAAC-TA-C-GAA--CCCCACAAAT-AAACTT-TTTATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCTCGC-AAAAAC-A-TAACC-ACTTA-T-A-----------------------------T-----------------AACTA--CG-C-TGC-TGGCGGC
gi|5 : gAAACACA-TTAACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A----------------------------------------------------------T-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-A--------------TA------A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTGTA-CCAAGATTCGAAAT-GCA--------------CTCCCCTCCCCCA---A-----TAATAATAATGTTTC-GA---A-CC-C-TCAAC-AT---AT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAC-ATGAA----CTACc
gi|5 : caag-----AA-ATAT--AT-A----T-C----TTTTAAA-TGGG----AAA-G-CATATCCCT---A-C-TA-A-GAA--CCA-ACAAATAACACTT-TTAATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCGCAA-AAACAC-A-TAACC-ACTTA-T-A--------------T--------------A-----------------ACCTAC-CGCC-gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatatatcttttaaatgggaaagcatatccctactaagaaccaacaaataacacttttaatctttacttaatttttctactcataagaagttcgcaaaaacacataaccacttatataacctaccgcc
gi|6 : caagaaacacattaacgcaagcgtcaaaagaacggccgcaaacccacttgtttcatcatcatatttaacattctactaacattgtacaatatttcaaaaacctttgaaatgaatttttaagggtacaataaatgccttttgttaattccgcaacttcgactttaattgtgtaccaagattcgaaatgcactcccctcccccaataataataatgtttcgaaccctcaacatatggttttacactcaccacttagaaatatacatgaactacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTTGT-TTC-AT---------------A--------------A--------------CAGTGTTTT---------AG--TTAATAAT-CATA----TTATTTAACATATCG---T-AA--CAT-TGATA-CA-TATTTC--AAA-AAC--TTTGAA-AGCAATTA--AA-GGGTACA---CTTCT-CT--CG-TAA-AAG-T-----A-TGC-CTTTTGT-AATACC--G-AA--CTT-GA-CT-TTTTA-A---TT-GTTT--TCAAGATTCGAAATTGCA--------------CCCCCCCCCC------------TAATAATAATGTTTT-GA---A-CC-C-TCAA--GA---AT--G-A-TCT--ACA-CTC-ACGCTCAG---ATATACAATGAG----CTA-----GAACATTC--T-G-AA-AA----------G--------------T---------------AT----------TG-GTAG-CA-CGCGA--TAATT-T--GC--AC-----A-CAACCTGA-GG-TCGG-C--TT-GTTC--CG----AA----ATC-TCGAC-GG-AGACAAG--CGAGTG--TCT-CGAG-C-GA-AG-------TCGCATC-ATAGCAATG-G-AT-ATT-GAC-TCCC-ATGCGATTGTGG--TGTTTTA---TTC--TT-GCATTC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAGATACT--AAAAT-----AA-ATATCCATCA----T-T----TTT--AA-TGGG----AAATG-CGTTT-CCC--CA-C-TA-A-G-A--CCA-ACAATTT--ACTT-TAAATCTTT----C-TTA-CTTTGTCT---A--C-----AA---TAGG--TTCGCAG-AAA-AC-A-TAACC-ATT---T-A-------------G---------------T-----------------ACCGAC---CT-TTC-TGGC
gi|7 : CA-TTGACGCAAGC-GTTTCAAAA-TT------------CC--CACTGTT-TTCTGTA--------------A--------------G--------------CA-T--TTT---------AT--GCA-TAATTCATA----TT----AACATCTCTA-CT-AAAACATCTG-TA-CAATATTTC--AAA---C-CTTTGAA-ATGAATTT--AATAGGTACA-AACTTT--CTG-CGGTAG-AAT-A-----AATGC--TTTTGTTAATTCCCGGCAA--CTTCGA-CT-TT-----------GTTTAACCAA--TTTTAAA--G---------------------------------------AATAATAATGTTT--GA---A-CC-C-TCAAC-GT---ATT-GCA-TTTTTACAGCTCAACACAAGGAA-A-ATACGATGAAA---CTACTCCGAAA-ACACA-TTG-AA-AAAAATGTTATGG--------------T---------------AT----------TTTATAT-CA-CGTGA--TAATT-TTAGC--AC-CCTGA-C-ACCCGA-AG-TCG--C--TG-TCTCCGCA----A-------T-CCGAC-GG-AGTCAAT--CGAGTG-------------------------TCGC--CGA--GC---GAA-GC-CTC-G-C---CA-T--CGAT-A-GC--TGTTTTA---TT------------------------------------------------------------GC-CTTTTTCAA--ACTCTAAAATTTTAAAA-ATAT--TT-A----T-T----GCTAAAA-TGGGGGGGAAA-G-CATTCCCCCGCCA-C-TA-A-GAA--CCA-ATAAATTACACTT-TT--TCTTTA--CT-
gi|8 : nn-----TGATAATAATGTTTT-GA---A-CC-C-TCAGC-GT---AT--GCAATTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------TTGCATTTTACTTTT-AT----------TG-GTAT-CA-CGCGA--TAANN-N-NNN--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNNNNN----NN----NNN-NNNNN-NN-NNNNNNN--NNNNNN--NNNNCGAG-C-GA-AGC--C---TCGCATCGGTAGCAATCAG-AG-ATT-G-T-TGCA-TTACGATTG-GC--TGTTT-A---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAATTAAAC-----GC-CTTTTCTAA--ACT------------------------------------TTTTAAA-TGGG----AAA-G-CATTTCCCC---A-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATATTTA--CT-TTA-TTTT-TCT---A--CA-CGTAA---TAGG--TTCGCAG-AAACA--------C-ACTTA-T-A-------------GT--------------A-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|9 : ataaatgttgcttggtcatcattttcatatggcgattcctcgtatttagttcacggatttcatattTTT-GA---A-CC-AATCAAA-GT---ATT-GCA-TTT--ACA-CTCAACACTTAGAATATATAT-ATGAA----CTACTG-GAAAAATACAAT-G-AA-------------G--------------TTGCGTTTTTACTTT-AT----------TG-GTAT-GA-CGCGA--TAATT-T-AGC--AC-AA-GA-C-A-CCGA-GT-TCGGNN--NN-NNNNNNNN----NN----NNN-NNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-T-T--AGT--C---TCGTATCGATAGCAATGAG-AT-ATTGG-C-TGCA--TACGATTG-CC--TG-CTTA---TTCTTTT-GCA-TC-A-TATTTTAAAT-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AATATAT--AT-A----TAT----ATTTAAATTGGG----AAAGG-CATTT-CCC--CA-C-TATATGAA--CCA-ACAAATTACAC-T-TTAA-CTTTA--CT-TTA-TTTT-TTTCTAA--CA-CACAAT--TAGG--TTCGCAG-ACACACTA-TTAAC-ACTTT-TAA-------------GTTTTGATATCATATAT-----------------ACCGAC-CGCA-TTC-TGGCGGCcggtaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTTACCACTTACAGTTTTCATATCATATAACCGACCGCCTACTGTCGGCCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777777 1111111111 111 22222222222 33333333333 2222222222222222222 33333333333 111111 1111 99999999999999999999999999999999999999999999999999999 1111111111111 444444444444444444444444444444444444444444 111 1 111 111 00000000000000000000000000000000000000000000000
lowQualScore : 3 3 55 4 4 55 3 3 777777777777777777777777777777777777777777777 3 4444444444 44 3 7777 555 6 55 3 44 3 3 3 333 3 3 3 3 3 1 666 55 3 88 00000000000 999 44 55 3 33333333333 3 3 1111111111111111111 99999999999 3 999 3 6 3 5555555 222222 44 3 3 6 9999 6666 8 3 3 3 3 11111111111111111111111111111111111111111111111111111 3 3 3 44 3 3 444 3 3 6 3 3 3 3 77 3 3 2 8888888888888 1 3 3 555 44 3 3 3 3 6666666 1 33 3 3 3 3 3 3 3 88 666 88 3 3 3 3 000000000000000000000000000000000000000000 3 55 88 88888 3 44 3 99999999999 3 7777 000 0 000 3 3 3 3 44 3 3 44 3 3 3 555 44 44 000 77 3 3 6 3 2 2 99999999999999999999999999999999999999999999999 2 2 3
lowQualScore : . . .. . . .. . . ............................................. . .......... .. . .... ... . .. . .. . . . ... . . . . . . ... .. . .. ........... ... .. .. . ........... . . ................... ........... . ... . . . ....... ...... .. . . . .... .... . . . . . ..................................................... . . . .. . . ... . . . . . . . .. . . . ............. . . . ... .. . . . . ....... . .. . . . . . . . .. ... .. . . . . .......................................... . .. .. ..... . .. . ........... . .... ... . ... . . . . .. . . .. . . . ... .. .. ... .. . . . . . . ............................................... . . .
lowQualScore : 6 6 00 0 0 55 3 3 111111111111111111111111111111111111111111111 3 2222222222 66 3 1111 888 7 88 3 66 3 3 3 222 3 3 3 3 3 2 000 11 3 33 22222222222 000 66 00 6 33333333333 6 6 9999999999999999999 88888888888 3 222 3 7 3 9999999 777777 22 3 3 7 6666 4444 8 3 3 3 3 55555555555555555555555555555555555555555555555555555 3 3 3 66 1 1 555 1 1 2 1 1 1 1 33 1 3 0 8888888888888 2 3 3 777 66 3 3 3 3 1111111 2 55 6 6 6 6 6 6 6 66 444 66 6 6 3 3 555555555555555555555555555555555555555555 3 00 66 33333 3 66 3 33333333333 3 1111 222 8 555 3 3 3 3 66 3 1 22 1 3 3 888 66 88 000 99 1 1 2 1 9 9 44444444444444444444444444444444444444444444444 9 9 1
consensus : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCA----AA----TC-TCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
Reference ( family-1712 ) : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCA----AA----TT-TCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|1 : AAACACGCTTGACGGCAGC-GT--CAA---GGACGGCCGC-AAACCGCCACTTTT-TTC-ATC--------------A--------------AGAGAAATTTTTAA-CA-TGTTTC---------ATTGGCAATGAT-CATA----TT---TGACAT-TCTAGCTCAA--CAT-TG-TA-CAATATTTA--AAA-AACGCTTTGAA--T-AATTTTTAA-GG-TACAGAACTTTTTCTGGCG-TAATAAT-A-----AATGC---TTAGTTAATAAC--GGAAAATTTCGA-CT-TT--ATA---TT-GTTTA-CCAAG-TTCGAAA--GCAGCCCCCCCCCCTCCCCCCTCCCCCCGATA-A-----TAATAATAATGTTTTTGA---A-CCGC-TCAAC-GT---ATTGGCA------ACA-C------CTTAGAA--TATAC-ATGAAGCTTTTA-TC-GAAA-ATAAA-T-GTAATAA----------G--------------TTTGCGTTTTACATTTAT----------TG-GTATTCAGCGCGAAATAATT-T-AGTTGGCGCA-GAAC-AACCGA-GGGTCGG-C--TGATCTCCCGCA----------TTATCCAACCGG-AGACAGT--CGAGTGGGTCT-CGAGGC-GAGAGG--C---TCGCATCGA-AGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TTGGCA-TC-ATTGT------T-----TTAAAT----------AAA-----C-----GCGCTTTTTCAA--ACTA-AAAAT-----TA-ATAT--AT-AATTTT-T----TTTTAAA-TGGG----AAAGG-CATTT-CCC--CA-CTTA-A-GAAAGCCA-GCAAATTACACTTGCTAATCTTTAGTCT-TTT-TTTT-TCT---A--CA-CATAA---TAGGCTTTCGCAG---ACAC-A-TAACC-ACTTA-T-A-------------GT--------------TTTTCATATCATATATTAACCGACGCGCC-TTCTTGGCGG
gi|10 : aagAAACACA-TTGACGCAAAC-AT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATCGAGAGAAATTTGTAA--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CACAATTTC---AA-AAC-CTTCGAA-ATAAATGTTTAA-GAGTAGA-AACTTTT-CTG-CG-TAG-AAT-A-----A------------TAA-TCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCATGATTCG----------------------CCCCCCCCCCA-----A-----TAATAATAATGTTTT-GA---G-CC-------------------------------CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-CG-AA----------GTTGCGTTTTACTTTT---------------AT----------TG-GCAT-CA-CGCGA--TAATT-T-AGT--AC-CA-GA-C-ACCCGA-GG-ACGG-C--TG-TTTCC-GCAAATTAA----TT-TTCAAC-GG-AGACAGC--CGAGTG--TCT-CGAT-C-GA-AGC--C---TAGCATTAATAGCAATGA
gi|11 : CA-TTGACGCAGGC-GT--CAAAA-GAACTGTTGC-AAACC--CACTTGT-TTC-ATC--------------ATGAGAAATTTGTAAA--------------CA-TGTTTT---------AT--GCAATAAG-CAAA----TT---TAACAT-TCTA-TT-AA--CAT-TG-TA-CAATATTT---GAC-AAC-CTTTGAA-ATGTATTTTTAG-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A--ACGATTTTGTTAATTCC--GCAA--AATCGA-CT-----------TT-GTTTG-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCTC-----C-----CAATAATGATGTTTT-GA---A-CT-C-TCAAC-GA---AT--G-----------------CACTGAAAA-ATATGC-ATG-----------------CATACA-T-G-AA-AA----------G--------------T---------------TG----------CG-TTAT-CA-CGCGG--TATTT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TC
gi|12 : tAAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------AGAGAAATTTGTAAACA-TGTTTCTATTGTTTCAT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTCAAAAA-AAC-CTATGAA-ATGAAATTTTAA-GGGTAAA-AACGTTT-CTA-CG-TAA-AAT-AAATTGA-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-AAATTT-GTTTA--CAAGATTCGAAATAGCA--------------ACCCCCCCCCC-----AATAATTAATAATAAGATTAT-AATTTA-CCAC-TCAG--GTTAAAT--CCA-TTT--A
gi|13 : acaagTT--ACA-CTGAACACGTAGAA-ATATGC-A-------------------CATACA-T-G-AA-CATTT-------A--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGA--AT-CA-GA-C-ACCCGA-GG-TCGT-C--TG-TCTCC-GCA----AA----TC-GCCGAC-GG-AGACAGC--TGAGTG--TTT-CGAG-C-GA-AGC--C---TCGCCCCGGGAGC----------CTC-G-C-TGCA-TTACGATTA-GC--TATTTCA---TTC--TT-GCA-TC-A-TAT------TTTAAAT----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AG-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTT-CCC--CA-C-TA-A-GAG--TCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAtca
gi|14 : TT-T-AGT--AC-CA-GAAC-ACTCGA-GA-TCGG-C--TG-TCTCC-G-A----AATTTCTT-TCCGAC-GGAAGATAGCTTCAAGTA--TCT-CGGG-CAAA-AGC--CTGGTGGCATCAATAACAATGAGTAT-ATT-G-CTTGCAGTCACAGTTG-G----GCCATAACTTTT--TT-GCA-CC-A-TGT------A-----T----TAGGAGATTACAAA-----T-----GC-CTTTTCta
gi|15 : gcgttatactatattttttaggacgcgtcagagtaaagg-A-TGT------T-----T----T----------AAA-----TTAAATGC-CTTTTCTAA--TCT--CAAAT-----AA--TA---AT-T----T-T----TTTTAAC-CAGA----AAA---CATTTCCCC---A-C-AG-A-GAA--CTA-AAAAATTATACCT-TTAAACTTTA--CT-TCT-TTTT-ACT---A--CA-CATAA---TAGT--TTTGCAG-AAACAC-A-AAACA-ACTTA-C-ACCTTTCATATCATGT--------------A-----------------ACCGAC-CGAC-TTC-TG
gi|16 : AATACA-TTGACGCAAGC-GT--CAAGA-GAACGGCCGC-AAACC--CACT--------AT---------------------------------------------CA-TGCTTT---------AT--GCAATAAT-CATA----TT---TAAC-----------------------------ATTTC---AA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AA---------------------TAATTCC--GCAT--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CGCCCCtaggccg
gi|17 : ACGATTT-GC--TATTCTA---TTT--TT-----T----TTT------T-----T----T----------ATATCATTC-----GC-CTTT-CTAA--ACT--TAGAT-----AA-ATAT--TT-A----T-T----TTCTAA--TTGG----AAA-A-CATTTCCCC--T--C-TA-A-GAA--CCA-ACAAATTACACCT-TTAATC-GTA--C--TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-A
gi|18 : --------------T---------------AT----------TT-GTAT-CA-CTAGA--TAATT-C-AGC--AC-CA-GA-C-ACCCAA-GG-TCGG-C--TG-TCTCC-GCA----AA----------------------GT--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAACGATGAG-AT-GTT-G-C-TGCA-TTtg
gi|19 : acataaaaaaaattactacttt-TTC-GTA--------------A--------------A--------------CA-TGTTTA---------AT--GCAATAAT-CATA----TT---TAACAT-TCTG-CT-CA--CAT-TG-TA-CAATGTTTC---AA-AAT-CTTTGAA-ATGAGTATTTAA-GGATACA-AACTT----------TA------A-----A-TGC-C-TTTGTTAATTCC--G
gi|2 : gaaaAAACACA-TTGATGCAAAT-GT--CAAAA-GAACGGCCGC--AACC--CAATTGTATTT-TTA--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCT--CT-AA--CAT-TG-TA-CAATATTTC---AA-AAC-CTTTG-A-ATGAATTTTTAA-GGGTACA-AATTTTT-CTG-CG-TAG-AATAA-----A-TGC-CTTTTGTTATATCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCC--------------CCCCCCCCCCCCCCCAA-----TAATAATAATGGTTT-GA---ACCC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAAC-CTTA-AA-ATATAC-ATGAA----CTACTC-GAAA---ACA-T-G-AA-AA----------G--------------TTGC------------GTTTTACTTTTATG-GTAG-CA-CGCGA--TAATT-T-TG------CN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NN-NNNNNN-NN-NNNNNNN--NNNNNN--NNN-NNNN-N-NN-NNN--N---NNNNNNNGATA-------------TT-G-C-TGCA-TTGCGATTG-GCTGTGTTTTA----TC--TT-GCA-TC-A-TGC------TTTGAAT----T----------AAA-----T-----GC-CTTTTTT-A--ACT--AAAAT-----TA-ATAT--AT-A----TATAATATTTTAAG-TGGG-----AA-G-CATGT-CCC--CA-C-TA-A-GAA--CC-----AATTA---------------A--CT-TTA-TTTT-TCT---T--CA-CATA-------G--TTCGCAGAAAACAC-ATTAACC-ACTTA-C-A-------------GT--------------TTTCATAATCATATA---ACCGAC-CGCC-CTC-TGGTG
gi|20 : aggACTT-TTAATCTTT----TATTA-CTTT-TCT---AGGCATCATAACATTAGGT-TTCGCAG-AAACAT-ACTAACCGACTTAGT-A-------------TT--------------TTCTATATCATTAA----ACCGAC-CGCCTTTC-TGccagccgg
gi|21 : gtAGG--TTCGCAG-AAACAC-A-TAACC-ACTTT-A-A-------------GT--------------TTTGATATCATATA----ACCGAC-CGCC-ATC-TGGCGGCtgg
gi|23 : C-A-TAATC-ATATA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGTGGCcggtaa
gi|24 : acttacaccttt-AAATGC-A-GAGCC-ACTTA-A-A-------------AT--------------A-----------------ACCGAC-CGCT-TCC-TGGCGGCccggta
gi|25 : GAA----CTACTG-GAAAAATACA-T-G-AA-AA----------G--------------T---------------ctgta
gi|26 : TA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGCGGCtgcgttttacttttatt
gi|27 : tagttttcatatcaAAACACA-TTGATGCAAGC-GT--CAAAcggta
gi|3 : aatatcacaagAAACACA-TTGACGCAAGC-GT--CAAAA-GAACAACCGC-AAACT--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTC---------AT--GTAATAAT-CATAATTATT---TAACAT-TCTA-----A--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTCT-CTG-CG-TAA-AAT-AT----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTT-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----------TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GA---AT--GCA-TTT--ACA-CTCAACGCTCAGAA-ATATAC-ATGAG----CTA----GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NN-NNNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TCCA-TTGCGATTG-GA--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CGTTTCCCC--CA-C-TA-A-GAA--CCA-ACAATTTACACTT-TAAATCTTTA--CT-TTACTTTT-TCT---A--CC-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCT-TTC-TGGCGGC
gi|4 : AAACACA-TTAAC-CAAGCCGT--CAAAACGAACGGCCGCGAAACC--CACTTGT-TT--ATC--------------A----------------------------------------------------------T-CATA----TT---CTACAT-TCTA-CT-AA--CAT-TG-TAACAATATTTC--AACCAAC-CTTTGAATATGAATTTTTAA-GGGTACA-A--------------TAA-AGT----------GC-CTTTTGT-AATTCC--GCAA--CTTCGAACTCTT--A-A---TTCGTGTA-CCAAAGATCGAAAT-G-A--------------CTCCCCTCCCC-----AA----TAATAATAATGTTTC-GAT--A-CC-C-TCAACCAT---AT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAA-TTGAA----CTAC-------------------------------------------------------------------------------GTAT-CA-CGCGA--TAATTCT-AGC--TC-CA-GA-A-ACCCGAAGG-TCGG-CCTTG-TTTCC-GCA----AA----TC-TCCGAC-GG-AGACTGT--CGAATG--TCT--GAG-C-GA-CCCTTC---TCGCATCGATAGCA-TGAG-ATTATT-G-C-TGCA-TTACGATTG-GCC-TGTTTTA---TTCC-TT-GCA-TCTA-TGT------T-----TAAATT----------AAA-----A-----TG-CTTTTCTAA--ACT--AAAAT-----AA-AT-T--AT-A----T-C----TTTTAAA-TGGG----AAA-AACATATCCCT--AAAC-TA-C-GAA--CCCCACAAAT-AAACTT-TTTATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCTCGC-AAAAAC-A-TAACC-ACTTA-T-A-----------------------------T-----------------AACTA--CG-C-TGC-TGGCGGC
gi|5 : gAAACACA-TTAACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A----------------------------------------------------------T-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-A--------------TA------A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTGTA-CCAAGATTCGAAAT-GCA--------------CTCCCCTCCCCCA---A-----TAATAATAATGTTTC-GA---A-CC-C-TCAAC-AT---AT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAC-ATGAA----CTACc
gi|5 : caag-----AA-ATAT--AT-A----T-C----TTTTAAA-TGGG----AAA-G-CATATCCCT---A-C-TA-A-GAA--CCA-ACAAATAACACTT-TTAATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCGCAA-AAACAC-A-TAACC-ACTTA-T-A--------------T--------------A-----------------ACCTAC-CGCC-gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatatatcttttaaatgggaaagcatatccctactaagaaccaacaaataacacttttaatctttacttaatttttctactcataagaagttcgcaaaaacacataaccacttatataacctaccgcc
gi|6 : caagaaacacattaacgcaagcgtcaaaagaacggccgcaaacccacttgtttcatcatcatatttaacattctactaacattgtacaatatttcaaaaacctttgaaatgaatttttaagggtacaataaatgccttttgttaattccgcaacttcgactttaattgtgtaccaagattcgaaatgcactcccctcccccaataataataatgtttcgaaccctcaacatatggttttacactcaccacttagaaatatacatgaactacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTTGT-TTC-AT---------------A--------------A--------------CAGTGTTTT---------AG--TTAATAAT-CATA----TTATTTAACATATCG---T-AA--CAT-TGATA-CA-TATTTC--AAA-AAC--TTTGAA-AGCAATTA--AA-GGGTACA---CTTCT-CT--CG-TAA-AAG-T-----A-TGC-CTTTTGT-AATACC--G-AA--CTT-GA-CT-TTTTA-A---TT-GTTT--TCAAGATTCGAAATTGCA--------------CCCCCCCCCC------------TAATAATAATGTTTT-GA---A-CC-C-TCAA--GA---AT--G-A-TCT--ACA-CTC-ACGCTCAG---ATATACAATGAG----CTA-----GAACATTC--T-G-AA-AA----------G--------------T---------------AT----------TG-GTAG-CA-CGCGA--TAATT-T--GC--AC-----A-CAACCTGA-GG-TCGG-CT-TG-T-TCC-G-A----AA----TC-T-CGAC-GG-AGACAAG--CGAGTG--TCT-CGAG-C-GA-AG-------TCGCATC-ATAGCAATG-G-AT-ATT-GAC-TCCC-ATGCGATTGTGG--TGTTTTA---TTC--TT-GCATTC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAGATACT--AAAAT-----AA-ATATCCATCA----T-T----TTT--AA-TGGG----AAATG-CGTTT-CCC--CA-C-TA-A-G-A--CCA-ACAATTT--ACTT-TAAATCTTT----C-TTA-CTTTGTCT---A--C-----AA---TAGG--TTCGCAG-AAA-AC-A-TAACC-ATT---T-A-------------G---------------T-----------------ACCGAC---CT-TTC-TGGC
gi|7 : CA-TTGACGCAAGC-GTTTCAAAA-TT------------CC--CACTGTT-TTCTGTA--------------A--------------G--------------CA-T--TTT---------AT--GCA-TAATTCATA----TT----AACATCTCTA-CT-AAAACATCTG-TA-CAATATTTC--AAA---C-CTTTGAA-ATGAATTT--AATAGGTACA-AACTTT--CTG-CGGTAG-AAT-A-----AATGC--TTTTGTTAATTCCCGGCAA--CTTCGA-CT-TT-----------GTTTAACCAA--TTTTAAA--G---------------------------------------AATAATAATGTTT--GA---A-CC-C-TCAAC-GT---ATT-GCA-TTTTTACAGCTCAACACAAGGAA-A-ATACGATGAAA---CTACTCCGAAA-ACACA-TTG-AA-AAAAATGTTATGG--------------T---------------AT----------TTTATAT-CA-CGTGA--TAATT-TTAGC--AC-CCTGA-C-ACCCGA-AG-TCG--C--TG-TCTCC-GCA----A--------TCCGAC-GG-AGTCAAT--CGAGTG-------------------------TCGC--CGA--GC---GAA-GC-CTC-G-C---CA-T--CGAT-A-GC--TGTTTTA---TT------------------------------------------------------------GC-CTTTTTCAA--ACTCTAAAATTTTAAAA-ATAT--TT-A----T-T----GCTAAAA-TGGGGGGGAAA-G-CATTCCCCCGCCA-C-TA-A-GAA--CCA-ATAAATTACACTT-TT--TCTTTA--CT-
gi|8 : nn-----TGATAATAATGTTTT-GA---A-CC-C-TCAGC-GT---AT--GCAATTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------TTGCATTTTACTTTT-AT----------TG-GTAT-CA-CGCGA--TAANN-N-NNN--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NN-NNNNNN-NN-NNNNNNN--NNNNNN--NNNNCGAG-C-GA-AGC--C---TCGCATCGGTAGCAATCAG-AG-ATT-G-T-TGCA-TTACGATTG-GC--TGTTT-A---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAATTAAAC-----GC-CTTTTCTAA--ACT------------------------------------TTTTAAA-TGGG----AAA-G-CATTTCCCC---A-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATATTTA--CT-TTA-TTTT-TCT---A--CA-CGTAA---TAGG--TTCGCAG-AAACA--------C-ACTTA-T-A-------------GT--------------A-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|9 : ataaatgttgcttggtcatcattttcatatggcgattcctcgtatttagttcacggatttcatattTTT-GA---A-CC-AATCAAA-GT---ATT-GCA-TTT--ACA-CTCAACACTTAGAATATATAT-ATGAA----CTACTG-GAAAAATACAAT-G-AA-------------G--------------TTGCGTTTTTACTTT-AT----------TG-GTAT-GA-CGCGA--TAATT-T-AGC--AC-AA-GA-C-A-CCGA-GT-TCGGNN--NN-NNNNN-NNN----NN----NN-NNNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-T-T--AGT--C---TCGTATCGATAGCAATGAG-AT-ATTGG-C-TGCA--TACGATTG-CC--TG-CTTA---TTCTTTT-GCA-TC-A-TATTTTAAAT-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AATATAT--AT-A----TAT----ATTTAAATTGGG----AAAGG-CATTT-CCC--CA-C-TATATGAA--CCA-ACAAATTACAC-T-TTAA-CTTTA--CT-TTA-TTTT-TTTCTAA--CA-CACAAT--TAGG--TTCGCAG-ACACACTA-TTAAC-ACTTT-TAA-------------GTTTTGATATCATATAT-----------------ACCGAC-CGCA-TTC-TGGCGGCcggtaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTTACCACTTACAGTTTTCATATCATATAACCGACCGCCTACTGTCGGCCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777777 1111111111 111 22222222222 33333333333 2222222222222222222 33333333333 111111 1111 99999999999999999999999999999999999999999999999999999 111111111111 444444444444444444444444444444444444444444 111 1 111 111 00000000000000000000000000000000000000000000000
lowQualScore : 3 3 55 4 4 55 3 3 777777777777777777777777777777777777777777777 3 4444444444 44 3 7777 555 6 55 3 44 3 3 3 333 3 3 3 3 3 1 666 55 3 88 00000000000 999 44 55 3 33333333333 3 3 1111111111111111111 99999999999 3 999 3 6 3 5555555 222222 44 3 3 6 9999 6666 8 3 3 3 3 11111111111111111111111111111111111111111111111111111 3 3 3 44 3 3 444 3 3 6 3 3 3 3 77 3 3 2 666666666666 1 3 3 555 44 3 3 3 3 6666666 1 33 3 3 3 3 3 3 3 88 666 88 3 3 3 3 000000000000000000000000000000000000000000 3 55 88 88888 3 44 3 99999999999 3 7777 000 0 000 3 3 3 3 44 3 3 44 3 3 3 555 44 44 000 77 3 3 6 3 2 2 99999999999999999999999999999999999999999999999 2 2 3
lowQualScore : . . .. . . .. . . ............................................. . .......... .. . .... ... . .. . .. . . . ... . . . . . . ... .. . .. ........... ... .. .. . ........... . . ................... ........... . ... . . . ....... ...... .. . . . .... .... . . . . . ..................................................... . . . .. . . ... . . . . . . . .. . . . ............ . . . ... .. . . . . ....... . .. . . . . . . . .. ... .. . . . . .......................................... . .. .. ..... . .. . ........... . .... ... . ... . . . . .. . . .. . . . ... .. .. ... .. . . . . . . ............................................... . . .
lowQualScore : 6 6 00 0 0 55 3 3 111111111111111111111111111111111111111111111 3 2222222222 66 3 1111 888 7 88 3 66 3 3 3 222 3 3 3 3 3 2 000 11 3 33 22222222222 000 66 00 6 33333333333 6 6 9999999999999999999 88888888888 3 222 3 7 3 9999999 777777 22 3 3 7 6666 4444 8 3 3 3 3 55555555555555555555555555555555555555555555555555555 3 3 3 66 1 1 555 1 1 2 1 1 1 1 33 1 3 0 222222222222 2 3 3 777 66 3 3 3 3 1111111 2 55 6 6 6 6 6 6 6 66 444 66 6 6 3 3 555555555555555555555555555555555555555555 3 00 66 33333 3 66 3 33333333333 3 1111 222 8 555 3 3 3 3 66 3 1 22 1 3 3 888 66 88 000 99 1 1 2 1 9 9 44444444444444444444444444444444444444444444444 9 9 1
consensus : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCA----AA----TCTCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
Reference ( family-1712 ) : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCA----AA----TCTCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|1 : AAACACGCTTGACGGCAGC-GT--CAA---GGACGGCCGC-AAACCGCCACTTTT-TTC-ATC--------------A--------------AGAGAAATTTTTAA-CA-TGTTTC---------ATTGGCAATGAT-CATA----TT---TGACAT-TCTAGCTCAA--CAT-TG-TA-CAATATTTA--AAA-AACGCTTTGAA--T-AATTTTTAA-GG-TACAGAACTTTTTCTGGCG-TAATAAT-A-----AATGC---TTAGTTAATAAC--GGAAAATTTCGA-CT-TT--ATA---TT-GTTTA-CCAAG-TTCGAAA--GCAGCCCCCCCCCCTCCCCCCTCCCCCCGATA-A-----TAATAATAATGTTTTTGA---A-CCGC-TCAAC-GT---ATTGGCA------ACA-C------CTTAGAA--TATAC-ATGAAGCTTTTA-TC-GAAA-ATAAA-T-GTAATAA----------G--------------TTTGCGTTTTACATTTAT----------TG-GTATTCAGCGCGAAATAATT-T-AGTTGGCGCA-GAAC-AACCGA-GGGTCGG-C--TGATCTCCCGCA----T-----TATCCAACCGG-AGACAGT--CGAGTGGGTCT-CGAGGC-GAGAGG--C---TCGCATCGA-AGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TTGGCA-TC-ATTGT------T-----TTAAAT----------AAA-----C-----GCGCTTTTTCAA--ACTA-AAAAT-----TA-ATAT--AT-AATTTT-T----TTTTAAA-TGGG----AAAGG-CATTT-CCC--CA-CTTA-A-GAAAGCCA-GCAAATTACACTTGCTAATCTTTAGTCT-TTT-TTTT-TCT---A--CA-CATAA---TAGGCTTTCGCAG---ACAC-A-TAACC-ACTTA-T-A-------------GT--------------TTTTCATATCATATATTAACCGACGCGCC-TTCTTGGCGG
gi|10 : aagAAACACA-TTGACGCAAAC-AT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATCGAGAGAAATTTGTAA--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CACAATTTC---AA-AAC-CTTCGAA-ATAAATGTTTAA-GAGTAGA-AACTTTT-CTG-CG-TAG-AAT-A-----A------------TAA-TCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCATGATTCG----------------------CCCCCCCCCCA-----A-----TAATAATAATGTTTT-GA---G-CC-------------------------------CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-CG-AA----------GTTGCGTTTTACTTTT---------------AT----------TG-GCAT-CA-CGCGA--TAATT-T-AGT--AC-CA-GA-C-ACCCGA-GG-ACGG-C--TG-TTTCC-GCAAATTAA----TTTTCAAC-GG-AGACAGC--CGAGTG--TCT-CGAT-C-GA-AGC--C---TAGCATTAATAGCAATGA
gi|11 : CA-TTGACGCAGGC-GT--CAAAA-GAACTGTTGC-AAACC--CACTTGT-TTC-ATC--------------ATGAGAAATTTGTAAA--------------CA-TGTTTT---------AT--GCAATAAG-CAAA----TT---TAACAT-TCTA-TT-AA--CAT-TG-TA-CAATATTT---GAC-AAC-CTTTGAA-ATGTATTTTTAG-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A--ACGATTTTGTTAATTCC--GCAA--AATCGA-CT-----------TT-GTTTG-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCTC-----C-----CAATAATGATGTTTT-GA---A-CT-C-TCAAC-GA---AT--G-----------------CACTGAAAA-ATATGC-ATG-----------------CATACA-T-G-AA-AA----------G--------------T---------------TG----------CG-TTAT-CA-CGCGG--TATTT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TC
gi|12 : tAAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------AGAGAAATTTGTAAACA-TGTTTCTATTGTTTCAT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTCAAAAA-AAC-CTATGAA-ATGAAATTTTAA-GGGTAAA-AACGTTT-CTA-CG-TAA-AAT-AAATTGA-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-AAATTT-GTTTA--CAAGATTCGAAATAGCA--------------ACCCCCCCCCC-----AATAATTAATAATAAGATTAT-AATTTA-CCAC-TCAG--GTTAAAT--CCA-TTT--A
gi|13 : acaagTT--ACA-CTGAACACGTAGAA-ATATGC-A-------------------CATACA-T-G-AA-CATTT-------A--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGA--AT-CA-GA-C-ACCCGA-GG-TCGT-C--TG-TCTCC-GCA----AA----TCGCCGAC-GG-AGACAGC--TGAGTG--TTT-CGAG-C-GA-AGC--C---TCGCCCCGGGAGC----------CTC-G-C-TGCA-TTACGATTA-GC--TATTTCA---TTC--TT-GCA-TC-A-TAT------TTTAAAT----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AG-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTT-CCC--CA-C-TA-A-GAG--TCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAtca
gi|14 : TT-T-AGT--AC-CA-GAAC-ACTCGA-GA-TCGG-C--TG-TCTCC-G-A----AATTTCTTTCCGAC-GGAAGATAGCTTCAAGTA--TCT-CGGG-CAAA-AGC--CTGGTGGCATCAATAACAATGAGTAT-ATT-G-CTTGCAGTCACAGTTG-G----GCCATAACTTTT--TT-GCA-CC-A-TGT------A-----T----TAGGAGATTACAAA-----T-----GC-CTTTTCta
gi|15 : gcgttatactatattttttaggacgcgtcagagtaaagg-A-TGT------T-----T----T----------AAA-----TTAAATGC-CTTTTCTAA--TCT--CAAAT-----AA--TA---AT-T----T-T----TTTTAAC-CAGA----AAA---CATTTCCCC---A-C-AG-A-GAA--CTA-AAAAATTATACCT-TTAAACTTTA--CT-TCT-TTTT-ACT---A--CA-CATAA---TAGT--TTTGCAG-AAACAC-A-AAACA-ACTTA-C-ACCTTTCATATCATGT--------------A-----------------ACCGAC-CGAC-TTC-TG
gi|16 : AATACA-TTGACGCAAGC-GT--CAAGA-GAACGGCCGC-AAACC--CACT--------AT---------------------------------------------CA-TGCTTT---------AT--GCAATAAT-CATA----TT---TAAC-----------------------------ATTTC---AA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AA---------------------TAATTCC--GCAT--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CGCCCCtaggccg
gi|17 : ACGATTT-GC--TATTCTA---TTT--TT-----T----TTT------T-----T----T----------ATATCATTC-----GC-CTTT-CTAA--ACT--TAGAT-----AA-ATAT--TT-A----T-T----TTCTAA--TTGG----AAA-A-CATTTCCCC--T--C-TA-A-GAA--CCA-ACAAATTACACCT-TTAATC-GTA--C--TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-A
gi|18 : --------------T---------------AT----------TT-GTAT-CA-CTAGA--TAATT-C-AGC--AC-CA-GA-C-ACCCAA-GG-TCGG-C--TG-TCTCC-GCA----AA---------------------GT--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAACGATGAG-AT-GTT-G-C-TGCA-TTtg
gi|19 : acataaaaaaaattactacttt-TTC-GTA--------------A--------------A--------------CA-TGTTTA---------AT--GCAATAAT-CATA----TT---TAACAT-TCTG-CT-CA--CAT-TG-TA-CAATGTTTC---AA-AAT-CTTTGAA-ATGAGTATTTAA-GGATACA-AACTT----------TA------A-----A-TGC-C-TTTGTTAATTCC--G
gi|2 : gaaaAAACACA-TTGATGCAAAT-GT--CAAAA-GAACGGCCGC--AACC--CAATTGTATTT-TTA--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCT--CT-AA--CAT-TG-TA-CAATATTTC---AA-AAC-CTTTG-A-ATGAATTTTTAA-GGGTACA-AATTTTT-CTG-CG-TAG-AATAA-----A-TGC-CTTTTGTTATATCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCC--------------CCCCCCCCCCCCCCCAA-----TAATAATAATGGTTT-GA---ACCC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAAC-CTTA-AA-ATATAC-ATGAA----CTACTC-GAAA---ACA-T-G-AA-AA----------G--------------TTGC------------GTTTTACTTTTATG-GTAG-CA-CGCGA--TAATT-T-TG------CN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNN-NNNN-N-NN-NNN--N---NNNNNNNGATA-------------TT-G-C-TGCA-TTGCGATTG-GCTGTGTTTTA----TC--TT-GCA-TC-A-TGC------TTTGAAT----T----------AAA-----T-----GC-CTTTTTT-A--ACT--AAAAT-----TA-ATAT--AT-A----TATAATATTTTAAG-TGGG-----AA-G-CATGT-CCC--CA-C-TA-A-GAA--CC-----AATTA---------------A--CT-TTA-TTTT-TCT---T--CA-CATA-------G--TTCGCAGAAAACAC-ATTAACC-ACTTA-C-A-------------GT--------------TTTCATAATCATATA---ACCGAC-CGCC-CTC-TGGTG
gi|20 : aggACTT-TTAATCTTT----TATTA-CTTT-TCT---AGGCATCATAACATTAGGT-TTCGCAG-AAACAT-ACTAACCGACTTAGT-A-------------TT--------------TTCTATATCATTAA----ACCGAC-CGCCTTTC-TGccagccgg
gi|21 : gtAGG--TTCGCAG-AAACAC-A-TAACC-ACTTT-A-A-------------GT--------------TTTGATATCATATA----ACCGAC-CGCC-ATC-TGGCGGCtgg
gi|23 : C-A-TAATC-ATATA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGTGGCcggtaa
gi|24 : acttacaccttt-AAATGC-A-GAGCC-ACTTA-A-A-------------AT--------------A-----------------ACCGAC-CGCT-TCC-TGGCGGCccggta
gi|25 : GAA----CTACTG-GAAAAATACA-T-G-AA-AA----------G--------------T---------------ctgta
gi|26 : TA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGCGGCtgcgttttacttttatt
gi|27 : tagttttcatatcaAAACACA-TTGATGCAAGC-GT--CAAAcggta
gi|3 : aatatcacaagAAACACA-TTGACGCAAGC-GT--CAAAA-GAACAACCGC-AAACT--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTC---------AT--GTAATAAT-CATAATTATT---TAACAT-TCTA-----A--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTCT-CTG-CG-TAA-AAT-AT----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTT-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----------TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GA---AT--GCA-TTT--ACA-CTCAACGCTCAGAA-ATATAC-ATGAG----CTA----GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TCCA-TTGCGATTG-GA--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CGTTTCCCC--CA-C-TA-A-GAA--CCA-ACAATTTACACTT-TAAATCTTTA--CT-TTACTTTT-TCT---A--CC-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCT-TTC-TGGCGGC
gi|4 : AAACACA-TTAAC-CAAGCCGT--CAAAACGAACGGCCGCGAAACC--CACTTGT-TT--ATC--------------A----------------------------------------------------------T-CATA----TT---CTACAT-TCTA-CT-AA--CAT-TG-TAACAATATTTC--AACCAAC-CTTTGAATATGAATTTTTAA-GGGTACA-A--------------TAA-AGT----------GC-CTTTTGT-AATTCC--GCAA--CTTCGAACTCTT--A-A---TTCGTGTA-CCAAAGATCGAAAT-G-A--------------CTCCCCTCCCC-----AA----TAATAATAATGTTTC-GAT--A-CC-C-TCAACCAT---AT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAA-TTGAA----CTAC-------------------------------------------------------------------------------GTAT-CA-CGCGA--TAATTCT-AGC--TC-CA-GA-A-ACCCGAAGG-TCGG-CCTTG-TTTCC-GCA----AA----TCTCCGAC-GG-AGACTGT--CGAATG--TCT--GAG-C-GA-CCCTTC---TCGCATCGATAGCA-TGAG-ATTATT-G-C-TGCA-TTACGATTG-GCC-TGTTTTA---TTCC-TT-GCA-TCTA-TGT------T-----TAAATT----------AAA-----A-----TG-CTTTTCTAA--ACT--AAAAT-----AA-AT-T--AT-A----T-C----TTTTAAA-TGGG----AAA-AACATATCCCT--AAAC-TA-C-GAA--CCCCACAAAT-AAACTT-TTTATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCTCGC-AAAAAC-A-TAACC-ACTTA-T-A-----------------------------T-----------------AACTA--CG-C-TGC-TGGCGGC
gi|5 : gAAACACA-TTAACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A----------------------------------------------------------T-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-A--------------TA------A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTGTA-CCAAGATTCGAAAT-GCA--------------CTCCCCTCCCCCA---A-----TAATAATAATGTTTC-GA---A-CC-C-TCAAC-AT---AT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAC-ATGAA----CTACc
gi|5 : caag-----AA-ATAT--AT-A----T-C----TTTTAAA-TGGG----AAA-G-CATATCCCT---A-C-TA-A-GAA--CCA-ACAAATAACACTT-TTAATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCGCAA-AAACAC-A-TAACC-ACTTA-T-A--------------T--------------A-----------------ACCTAC-CGCC-gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatatatcttttaaatgggaaagcatatccctactaagaaccaacaaataacacttttaatctttacttaatttttctactcataagaagttcgcaaaaacacataaccacttatataacctaccgcc
gi|6 : caagaaacacattaacgcaagcgtcaaaagaacggccgcaaacccacttgtttcatcatcatatttaacattctactaacattgtacaatatttcaaaaacctttgaaatgaatttttaagggtacaataaatgccttttgttaattccgcaacttcgactttaattgtgtaccaagattcgaaatgcactcccctcccccaataataataatgtttcgaaccctcaacatatggttttacactcaccacttagaaatatacatgaactacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTTGT-TTC-AT---------------A--------------A--------------CAGTGTTTT---------AG--TTAATAAT-CATA----TTATTTAACATATCG---T-AA--CAT-TGATA-CA-TATTTC--AAA-AAC--TTTGAA-AGCAATTA--AA-GGGTACA---CTTCT-CT--CG-TAA-AAG-T-----A-TGC-CTTTTGT-AATACC--G-AA--CTT-GA-CT-TTTTA-A---TT-GTTT--TCAAGATTCGAAATTGCA--------------CCCCCCCCCC------------TAATAATAATGTTTT-GA---A-CC-C-TCAA--GA---AT--G-A-TCT--ACA-CTC-ACGCTCAG---ATATACAATGAG----CTA-----GAACATTC--T-G-AA-AA----------G--------------T---------------AT----------TG-GTAG-CA-CGCGA--TAATT-T--GC--AC-----A-CAACCTGA-GG-TCGG-CT-TG-T-TCC-G-A----AA----TCT-CGAC-GG-AGACAAG--CGAGTG--TCT-CGAG-C-GA-AG-------TCGCATC-ATAGCAATG-G-AT-ATT-GAC-TCCC-ATGCGATTGTGG--TGTTTTA---TTC--TT-GCATTC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAGATACT--AAAAT-----AA-ATATCCATCA----T-T----TTT--AA-TGGG----AAATG-CGTTT-CCC--CA-C-TA-A-G-A--CCA-ACAATTT--ACTT-TAAATCTTT----C-TTA-CTTTGTCT---A--C-----AA---TAGG--TTCGCAG-AAA-AC-A-TAACC-ATT---T-A-------------G---------------T-----------------ACCGAC---CT-TTC-TGGC
gi|7 : CA-TTGACGCAAGC-GTTTCAAAA-TT------------CC--CACTGTT-TTCTGTA--------------A--------------G--------------CA-T--TTT---------AT--GCA-TAATTCATA----TT----AACATCTCTA-CT-AAAACATCTG-TA-CAATATTTC--AAA---C-CTTTGAA-ATGAATTT--AATAGGTACA-AACTTT--CTG-CGGTAG-AAT-A-----AATGC--TTTTGTTAATTCCCGGCAA--CTTCGA-CT-TT-----------GTTTAACCAA--TTTTAAA--G---------------------------------------AATAATAATGTTT--GA---A-CC-C-TCAAC-GT---ATT-GCA-TTTTTACAGCTCAACACAAGGAA-A-ATACGATGAAA---CTACTCCGAAA-ACACA-TTG-AA-AAAAATGTTATGG--------------T---------------AT----------TTTATAT-CA-CGTGA--TAATT-TTAGC--AC-CCTGA-C-ACCCGA-AG-TCG--C--TG-TCTCC-GCA----A-------TCCGAC-GG-AGTCAAT--CGAGTG-------------------------TCGC--CGA--GC---GAA-GC-CTC-G-C---CA-T--CGAT-A-GC--TGTTTTA---TT------------------------------------------------------------GC-CTTTTTCAA--ACTCTAAAATTTTAAAA-ATAT--TT-A----T-T----GCTAAAA-TGGGGGGGAAA-G-CATTCCCCCGCCA-C-TA-A-GAA--CCA-ATAAATTACACTT-TT--TCTTTA--CT-
gi|8 : nn-----TGATAATAATGTTTT-GA---A-CC-C-TCAGC-GT---AT--GCAATTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------TTGCATTTTACTTTT-AT----------TG-GTAT-CA-CGCGA--TAANN-N-NNN--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNNNCGAG-C-GA-AGC--C---TCGCATCGGTAGCAATCAG-AG-ATT-G-T-TGCA-TTACGATTG-GC--TGTTT-A---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAATTAAAC-----GC-CTTTTCTAA--ACT------------------------------------TTTTAAA-TGGG----AAA-G-CATTTCCCC---A-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATATTTA--CT-TTA-TTTT-TCT---A--CA-CGTAA---TAGG--TTCGCAG-AAACA--------C-ACTTA-T-A-------------GT--------------A-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|9 : ataaatgttgcttggtcatcattttcatatggcgattcctcgtatttagttcacggatttcatattTTT-GA---A-CC-AATCAAA-GT---ATT-GCA-TTT--ACA-CTCAACACTTAGAATATATAT-ATGAA----CTACTG-GAAAAATACAAT-G-AA-------------G--------------TTGCGTTTTTACTTT-AT----------TG-GTAT-GA-CGCGA--TAATT-T-AGC--AC-AA-GA-C-A-CCGA-GT-TCGGNN--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-T-T--AGT--C---TCGTATCGATAGCAATGAG-AT-ATTGG-C-TGCA--TACGATTG-CC--TG-CTTA---TTCTTTT-GCA-TC-A-TATTTTAAAT-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AATATAT--AT-A----TAT----ATTTAAATTGGG----AAAGG-CATTT-CCC--CA-C-TATATGAA--CCA-ACAAATTACAC-T-TTAA-CTTTA--CT-TTA-TTTT-TTTCTAA--CA-CACAAT--TAGG--TTCGCAG-ACACACTA-TTAAC-ACTTT-TAA-------------GTTTTGATATCATATAT-----------------ACCGAC-CGCA-TTC-TGGCGGCcggtaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTTACCACTTACAGTTTTCATATCATATAACCGACCGCCTACTGTCGGCCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777777 1111111111 111 22222222222 33333333333 2222222222222222222 33333333333 111111 1111 99999999999999999999999999999999999999999999999999999 111111111111 444444444444444444444444444444444444444444 111 1 111 111 00000000000000000000000000000000000000000000000
lowQualScore : 3 3 55 4 4 55 3 3 777777777777777777777777777777777777777777777 3 4444444444 44 3 7777 555 6 55 3 44 3 3 3 333 3 3 3 3 3 1 666 55 3 88 00000000000 999 44 55 3 33333333333 3 3 1111111111111111111 99999999999 3 999 3 6 3 5555555 222222 44 3 3 6 9999 6666 8 3 3 3 3 11111111111111111111111111111111111111111111111111111 3 3 3 44 3 3 444 3 3 6 3 3 3 3 77 3 3 2 666666666666 1 3 3 555 44 3 3 3 3 6666666 1 33 3 3 3 3 3 3 3 88 666 88 3 3 3 3 000000000000000000000000000000000000000000 3 55 88 88888 3 44 3 99999999999 3 7777 000 0 000 3 3 3 3 44 3 3 44 3 3 3 555 44 44 000 77 3 3 6 3 2 2 99999999999999999999999999999999999999999999999 2 2 3
lowQualScore : . . .. . . .. . . ............................................. . .......... .. . .... ... . .. . .. . . . ... . . . . . . ... .. . .. ........... ... .. .. . ........... . . ................... ........... . ... . . . ....... ...... .. . . . .... .... . . . . . ..................................................... . . . .. . . ... . . . . . . . .. . . . ............ . . . ... .. . . . . ....... . .. . . . . . . . .. ... .. . . . . .......................................... . .. .. ..... . .. . ........... . .... ... . ... . . . . .. . . .. . . . ... .. .. ... .. . . . . . . ............................................... . . .
lowQualScore : 6 6 00 0 0 55 3 3 111111111111111111111111111111111111111111111 3 2222222222 66 3 1111 888 7 88 3 66 3 3 3 222 3 3 3 3 3 2 000 11 3 33 22222222222 000 66 00 6 33333333333 6 6 9999999999999999999 88888888888 3 222 3 7 3 9999999 777777 22 3 3 7 6666 4444 8 3 3 3 3 55555555555555555555555555555555555555555555555555555 3 3 3 66 1 1 555 1 1 2 1 1 1 1 33 1 3 0 222222222222 2 3 3 777 66 3 3 3 3 1111111 2 55 6 6 6 6 6 6 6 66 444 66 6 6 3 3 555555555555555555555555555555555555555555 3 00 66 33333 3 66 3 33333333333 3 1111 222 8 555 3 3 3 3 66 3 1 22 1 3 3 888 66 88 000 99 1 1 2 1 9 9 44444444444444444444444444444444444444444444444 9 9 1
consensus : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCA----AA----TCTCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
Reference ( family-1712 ) : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCA----AA----TCTCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|1 : AAACACGCTTGACGGCAGC-GT--CAA---GGACGGCCGC-AAACCGCCACTTTT-TTC-ATC--------------A--------------AGAGAAATTTTTAA-CA-TGTTTC---------ATTGGCAATGAT-CATA----TT---TGACAT-TCTAGCTCAA--CAT-TG-TA-CAATATTTA--AAA-AACGCTTTGAA--T-AATTTTTAA-GG-TACAGAACTTTTTCTGGCG-TAATAAT-A-----AATGC---TTAGTTAATAAC--GGAAAATTTCGA-CT-TT--ATA---TT-GTTTA-CCAAG-TTCGAAA--GCAGCCCCCCCCCCTCCCCCCTCCCCCCGATA-A-----TAATAATAATGTTTTTGA---A-CCGC-TCAAC-GT---ATTGGCA------ACA-C------CTTAGAA--TATAC-ATGAAGCTTTTA-TC-GAAA-ATAAA-T-GTAATAA----------G--------------TTTGCGTTTTACATTTAT----------TG-GTATTCAGCGCGAAATAATT-T-AGTTGGCGCA-GAAC-AACCGA-GGGTCGG-C--TGATCTCCCGCA----T-----TATCCAACCGG-AGACAGT--CGAGTGGGTCT-CGAGGC-GAGAGG--C---TCGCATCGA-AGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TTGGCA-TC-ATTGT------T-----TTAAAT----------AAA-----C-----GCGCTTTTTCAA--ACTA-AAAAT-----TA-ATAT--AT-AATTTT-T----TTTTAAA-TGGG----AAAGG-CATTT-CCC--CA-CTTA-A-GAAAGCCA-GCAAATTACACTTGCTAATCTTTAGTCT-TTT-TTTT-TCT---A--CA-CATAA---TAGGCTTTCGCAG---ACAC-A-TAACC-ACTTA-T-A-------------GT--------------TTTTCATATCATATATTAACCGACGCGCC-TTCTTGGCGG
gi|10 : aagAAACACA-TTGACGCAAAC-AT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATCGAGAGAAATTTGTAA--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CACAATTTC---AA-AAC-CTTCGAA-ATAAATGTTTAA-GAGTAGA-AACTTTT-CTG-CG-TAG-AAT-A-----A------------TAA-TCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCATGATTCG----------------------CCCCCCCCCCA-----A-----TAATAATAATGTTTT-GA---G-CC-------------------------------CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-CG-AA----------GTTGCGTTTTACTTTT---------------AT----------TG-GCAT-CA-CGCGA--TAATT-T-AGT--AC-CA-GA-C-ACCCGA-GG-ACGG-C--TG-TTTCC-GCAAATTAA----TTTTCAAC-GG-AGACAGC--CGAGTG--TCT-CGAT-C-GA-AGC--C---TAGCATTAATAGCAATGA
gi|11 : CA-TTGACGCAGGC-GT--CAAAA-GAACTGTTGC-AAACC--CACTTGT-TTC-ATC--------------ATGAGAAATTTGTAAA--------------CA-TGTTTT---------AT--GCAATAAG-CAAA----TT---TAACAT-TCTA-TT-AA--CAT-TG-TA-CAATATTT---GAC-AAC-CTTTGAA-ATGTATTTTTAG-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A--ACGATTTTGTTAATTCC--GCAA--AATCGA-CT-----------TT-GTTTG-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCTC-----C-----CAATAATGATGTTTT-GA---A-CT-C-TCAAC-GA---AT--G-----------------CACTGAAAA-ATATGC-ATG-----------------CATACA-T-G-AA-AA----------G--------------T---------------TG----------CG-TTAT-CA-CGCGG--TATTT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TC
gi|12 : tAAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------AGAGAAATTTGTAAACA-TGTTTCTATTGTTTCAT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTCAAAAA-AAC-CTATGAA-ATGAAATTTTAA-GGGTAAA-AACGTTT-CTA-CG-TAA-AAT-AAATTGA-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-AAATTT-GTTTA--CAAGATTCGAAATAGCA--------------ACCCCCCCCCC-----AATAATTAATAATAAGATTAT-AATTTA-CCAC-TCAG--GTTAAAT--CCA-TTT--A
gi|13 : acaagTT--ACA-CTGAACACGTAGAA-ATATGC-A-------------------CATACA-T-G-AA-CATTT-------A--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGA--AT-CA-GA-C-ACCCGA-GG-TCGT-C--TG-TCTCC-GCA----AA----TCGCCGAC-GG-AGACAGC--TGAGTG--TTT-CGAG-C-GA-AGC--C---TCGCCCCGGGAGC----------CTC-G-C-TGCA-TTACGATTA-GC--TATTTCA---TTC--TT-GCA-TC-A-TAT------TTTAAAT----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AG-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTT-CCC--CA-C-TA-A-GAG--TCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAtca
gi|14 : TT-T-AGT--AC-CA-GAAC-ACTCGA-GA-TCGG-C--TG-TCTCC-G-A----AATTTCTTTCCGAC-GGAAGATAGCTTCAAGTA--TCT-CGGG-CAAA-AGC--CTGGTGGCATCAATAACAATGAGTAT-ATT-G-CTTGCAGTCACAGTTG-G----GCCATAACTTTT--TT-GCA-CC-A-TGT------A-----T----TAGGAGATTACAAA-----T-----GC-CTTTTCta
gi|15 : gcgttatactatattttttaggacgcgtcagagtaaagg-A-TGT------T-----T----T----------AAA-----TTAAATGC-CTTTTCTAA--TCT--CAAAT-----AA--TA---AT-T----T-T----TTTTAAC-CAGA----AAA---CATTTCCCC---A-C-AG-A-GAA--CTA-AAAAATTATACCT-TTAAACTTTA--CT-TCT-TTTT-ACT---A--CA-CATAA---TAGT--TTTGCAG-AAACAC-A-AAACA-ACTTA-C-ACCTTTCATATCATGT--------------A-----------------ACCGAC-CGAC-TTC-TG
gi|16 : AATACA-TTGACGCAAGC-GT--CAAGA-GAACGGCCGC-AAACC--CACT--------AT---------------------------------------------CA-TGCTTT---------AT--GCAATAAT-CATA----TT---TAAC-----------------------------ATTTC---AA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AA---------------------TAATTCC--GCAT--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CGCCCCtaggccg
gi|17 : ACGATTT-GC--TATTCTA---TTT--TT-----T----TTT------T-----T----T----------ATATCATTC-----GC-CTTT-CTAA--ACT--TAGAT-----AA-ATAT--TT-A----T-T----TTCTAA--TTGG----AAA-A-CATTTCCCC--T--C-TA-A-GAA--CCA-ACAAATTACACCT-TTAATC-GTA--C--TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-A
gi|18 : --------------T---------------AT----------TT-GTAT-CA-CTAGA--TAATT-C-AGC--AC-CA-GA-C-ACCCAA-GG-TCGG-C--TG-TCTCC-GCA----AA---------------------GT--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAACGATGAG-AT-GTT-G-C-TGCA-TTtg
gi|19 : acataaaaaaaattactacttt-TTC-GTA--------------A--------------A--------------CA-TGTTTA---------AT--GCAATAAT-CATA----TT---TAACAT-TCTG-CT-CA--CAT-TG-TA-CAATGTTTC---AA-AAT-CTTTGAA-ATGAGTATTTAA-GGATACA-AACTT----------TA------A-----A-TGC-C-TTTGTTAATTCC--G
gi|2 : gaaaAAACACA-TTGATGCAAAT-GT--CAAAA-GAACGGCCGC--AACC--CAATTGTATTT-TTA--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCT--CT-AA--CAT-TG-TA-CAATATTTC---AA-AAC-CTTTG-A-ATGAATTTTTAA-GGGTACA-AATTTTT-CTG-CG-TAG-AATAA-----A-TGC-CTTTTGTTATATCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCC--------------CCCCCCCCCCCCCCCAA-----TAATAATAATGGTTT-GA---ACCC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAAC-CTTA-AA-ATATAC-ATGAA----CTACTC-GAAA---ACA-T-G-AA-AA----------G--------------TTGC------------GTTTTACTTTTATG-GTAG-CA-CGCGA--TAATT-T-TG------CN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNN-NNNN-N-NN-NNN--N---NNNNNNNGATA-------------TT-G-C-TGCA-TTGCGATTG-GCTGTGTTTTA----TC--TT-GCA-TC-A-TGC------TTTGAAT----T----------AAA-----T-----GC-CTTTTTT-A--ACT--AAAAT-----TA-ATAT--AT-A----TATAATATTTTAAG-TGGG-----AA-G-CATGT-CCC--CA-C-TA-A-GAA--CC-----AATTA---------------A--CT-TTA-TTTT-TCT---T--CA-CATA-------G--TTCGCAGAAAACAC-ATTAACC-ACTTA-C-A-------------GT--------------TTTCATAATCATATA---ACCGAC-CGCC-CTC-TGGTG
gi|20 : aggACTT-TTAATCTTT----TATTA-CTTT-TCT---AGGCATCATAACATTAGGT-TTCGCAG-AAACAT-ACTAACCGACTTAGT-A-------------TT--------------TTCTATATCATTAA----ACCGAC-CGCCTTTC-TGccagccgg
gi|21 : gtAGG--TTCGCAG-AAACAC-A-TAACC-ACTTT-A-A-------------GT--------------TTTGATATCATATA----ACCGAC-CGCC-ATC-TGGCGGCtgg
gi|23 : C-A-TAATC-ATATA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGTGGCcggtaa
gi|24 : acttacaccttt-AAATGC-A-GAGCC-ACTTA-A-A-------------AT--------------A-----------------ACCGAC-CGCT-TCC-TGGCGGCccggta
gi|25 : GAA----CTACTG-GAAAAATACA-T-G-AA-AA----------G--------------T---------------ctgta
gi|26 : TA-T-A-----------------------------------------------ACCGAC-CGCC-TTC-TGGCGGCtgcgttttacttttatt
gi|27 : tagttttcatatcaAAACACA-TTGATGCAAGC-GT--CAAAcggta
gi|3 : aatatcacaagAAACACA-TTGACGCAAGC-GT--CAAAA-GAACAACCGC-AAACT--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTC---------AT--GTAATAAT-CATAATTATT---TAACAT-TCTA-----A--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTCT-CTG-CG-TAA-AAT-AT----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTT-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----------TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GA---AT--GCA-TTT--ACA-CTCAACGCTCAGAA-ATATAC-ATGAG----CTA----GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TCCA-TTGCGATTG-GA--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CGTTTCCCC--CA-C-TA-A-GAA--CCA-ACAATTTACACTT-TAAATCTTTA--CT-TTACTTTT-TCT---A--CC-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCT-TTC-TGGCGGC
gi|4 : AAACACA-TTAAC-CAAGCCGT--CAAAACGAACGGCCGCGAAACC--CACTTGT-TT--ATC--------------A----------------------------------------------------------T-CATA----TT---CTACAT-TCTA-CT-AA--CAT-TG-TAACAATATTTC--AACCAAC-CTTTGAATATGAATTTTTAA-GGGTACA-A--------------TAA-AGT----------GC-CTTTTGT-AATTCC--GCAA--CTTCGAACTCTT--A-A---TTCGTGTA-CCAAAGATCGAAAT-G-A--------------CTCCCCTCCCC-----AA----TAATAATAATGTTTC-GAT--A-CC-C-TCAACCAT---AT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAA-TTGAA----CTAC-------------------------------------------------------------------------------GTAT-CA-CGCGA--TAATTCT-AGC--TC-CA-GA-A-ACCCGAAGG-TCGG-CCTTG-TTTCC-GCA----AA----TCTCCGAC-GG-AGACTGT--CGAATG--TCT--GAG-C-GA-CCCTTC---TCGCATCGATAGCA-TGAG-ATTATT-G-C-TGCA-TTACGATTG-GCC-TGTTTTA---TTCC-TT-GCA-TCTA-TGT------T-----TAAATT----------AAA-----A-----TG-CTTTTCTAA--ACT--AAAAT-----AA-AT-T--AT-A----T-C----TTTTAAA-TGGG----AAA-AACATATCCCT--AAAC-TA-C-GAA--CCCCACAAAT-AAACTT-TTTATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCTCGC-AAAAAC-A-TAACC-ACTTA-T-A-----------------------------T-----------------AACTA--CG-C-TGC-TGGCGGC
gi|5 : gAAACACA-TTAACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A----------------------------------------------------------T-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-A--------------TA------A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTGTA-CCAAGATTCGAAAT-GCA--------------CTCCCCTCCCCCA---A-----TAATAATAATGTTTC-GA---A-CC-C-TCAAC-AT---AT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAC-ATGAA----CTACc
gi|5 : caag-----AA-ATAT--AT-A----T-C----TTTTAAA-TGGG----AAA-G-CATATCCCT---A-C-TA-A-GAA--CCA-ACAAATAACACTT-TTAATCTTTA--CT-TAA-TTTT-TCT---A--CT-CATAA---GAAG--TTCGCAA-AAACAC-A-TAACC-ACTTA-T-A--------------T--------------A-----------------ACCTAC-CGCC-gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatatatcttttaaatgggaaagcatatccctactaagaaccaacaaataacacttttaatctttacttaatttttctactcataagaagttcgcaaaaacacataaccacttatataacctaccgcc
gi|6 : caagaaacacattaacgcaagcgtcaaaagaacggccgcaaacccacttgtttcatcatcatatttaacattctactaacattgtacaatatttcaaaaacctttgaaatgaatttttaagggtacaataaatgccttttgttaattccgcaacttcgactttaattgtgtaccaagattcgaaatgcactcccctcccccaataataataatgtttcgaaccctcaacatatggttttacactcaccacttagaaatatacatgaactacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTTGT-TTC-AT---------------A--------------A--------------CAGTGTTTT---------AG--TTAATAAT-CATA----TTATTTAACATATCG---T-AA--CAT-TGATA-CA-TATTTC--AAA-AAC--TTTGAA-AGCAATTA--AA-GGGTACA---CTTCT-CT--CG-TAA-AAG-T-----A-TGC-CTTTTGT-AATACC--G-AA--CTT-GA-CT-TTTTA-A---TT-GTTT--TCAAGATTCGAAATTGCA--------------CCCCCCCCCC------------TAATAATAATGTTTT-GA---A-CC-C-TCAA--GA---AT--G-A-TCT--ACA-CTC-ACGCTCAG---ATATACAATGAG----CTA-----GAACATTC--T-G-AA-AA----------G--------------T---------------AT----------TG-GTAG-CA-CGCGA--TAATT-T--GC--AC-----A-CAACCTGA-GG-TCGG-CT-TG-T-TCC-G-A----AA----TCT-CGAC-GG-AGACAAG--CGAGTG--TCT-CGAG-C-GA-AG-------TCGCATC-ATAGCAATG-G-AT-ATT-GAC-TCCC-ATGCGATTGTGG--TGTTTTA---TTC--TT-GCATTC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAGATACT--AAAAT-----AA-ATATCCATCA----T-T----TTT--AA-TGGG----AAATG-CGTTT-CCC--CA-C-TA-A-G-A--CCA-ACAATTT--ACTT-TAAATCTTT----C-TTA-CTTTGTCT---A--C-----AA---TAGG--TTCGCAG-AAA-AC-A-TAACC-ATT---T-A-------------G---------------T-----------------ACCGAC---CT-TTC-TGGC
gi|7 : CA-TTGACGCAAGC-GTTTCAAAA-TT------------CC--CACTGTT-TTCTGTA--------------A--------------G--------------CA-T--TTT---------AT--GCA-TAATTCATA----TT----AACATCTCTA-CT-AAAACATCTG-TA-CAATATTTC--AAA---C-CTTTGAA-ATGAATTT--AATAGGTACA-AACTTT--CTG-CGGTAG-AAT-A-----AATGC--TTTTGTTAATTCCCGGCAA--CTTCGA-CT-TT-----------GTTTAACCAA--TTTTAAA--G---------------------------------------AATAATAATGTTT--GA---A-CC-C-TCAAC-GT---ATT-GCA-TTTTTACAGCTCAACACAAGGAA-A-ATACGATGAAA---CTACTCCGAAA-ACACA-TTG-AA-AAAAATGTTATGG--------------T---------------AT----------TTTATAT-CA-CGTGA--TAATT-TTAGC--AC-CCTGA-C-ACCCGA-AG-TCG--C--TG-TCTCC-GCA----A-------TCCGAC-GG-AGTCAAT--CGAGTG-------------------------TCGC--CGA--GC---GAA-GC-CTC-G-C---CA-T--CGAT-A-GC--TGTTTTA---TT------------------------------------------------------------GC-CTTTTTCAA--ACTCTAAAATTTTAAAA-ATAT--TT-A----T-T----GCTAAAA-TGGGGGGGAAA-G-CATTCCCCCGCCA-C-TA-A-GAA--CCA-ATAAATTACACTT-TT--TCTTTA--CT-
gi|8 : nn-----TGATAATAATGTTTT-GA---A-CC-C-TCAGC-GT---AT--GCAATTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------TTGCATTTTACTTTT-AT----------TG-GTAT-CA-CGCGA--TAANN-N-NNN--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNNNCGAG-C-GA-AGC--C---TCGCATCGGTAGCAATCAG-AG-ATT-G-T-TGCA-TTACGATTG-GC--TGTTT-A---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAATTAAAC-----GC-CTTTTCTAA--ACT------------------------------------TTTTAAA-TGGG----AAA-G-CATTTCCCC---A-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATATTTA--CT-TTA-TTTT-TCT---A--CA-CGTAA---TAGG--TTCGCAG-AAACA--------C-ACTTA-T-A-------------GT--------------A-----------------ACCGAC-CGCC-TTC-TGGCGGC
gi|9 : ataaatgttgcttggtcatcattttcatatggcgattcctcgtatttagttcacggatttcatattTTT-GA---A-CC-AATCAAA-GT---ATT-GCA-TTT--ACA-CTCAACACTTAGAATATATAT-ATGAA----CTACTG-GAAAAATACAAT-G-AA-------------G--------------TTGCGTTTTTACTTT-AT----------TG-GTAT-GA-CGCGA--TAATT-T-AGC--AC-AA-GA-C-A-CCGA-GT-TCGGNN--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-T-T--AGT--C---TCGTATCGATAGCAATGAG-AT-ATTGG-C-TGCA--TACGATTG-CC--TG-CTTA---TTCTTTT-GCA-TC-A-TATTTTAAAT-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AATATAT--AT-A----TAT----ATTTAAATTGGG----AAAGG-CATTT-CCC--CA-C-TATATGAA--CCA-ACAAATTACAC-T-TTAA-CTTTA--CT-TTA-TTTT-TTTCTAA--CA-CACAAT--TAGG--TTCGCAG-ACACACTA-TTAAC-ACTTT-TAA-------------GTTTTGATATCATATAT-----------------ACCGAC-CGCA-TTC-TGGCGGCcggtaa
blockSeqs : . C TT C G . A T CGAGAGAAATTTGTAAA G CTATTGTTTC . T ATTA ATT A A . AA C A A AAA C . T T . A TT G G G TAAATTGAT GAT CG . A TTAAAAT C A TAGCA AATAAT . TTT C A A GTTAA TGCA TT G T A A CTCC C A T . . GTTGCGTTTTACTTTTAT T . . . C T T . T A A A . N CT . . C AATTAATT T . A CTT . N . A . CCTGG T AA T T G A T G T TG ACT TT . T T . ATTAGGAGATTACAAAT . AT CT TTTAA T CC C TATAATA T GGGG AA C GCC A . T T . C . . A C G CTA GG AT CAT T A T T G G A GTTTTCATAATCATATA . T .
blockSeqs : . . . . . . . . CATGAGAAATTTGTAAA . T . . . . C A . . . . . G . . . . . A TT G . G TAAAT CT . . . TTTTAA . . TTGCA CCCCAA . T . . . CCAT GCAA . . . G . CTC C . . . . GTTGCATTTTACTTTTAT . . . . . . C . . . . . . . T . . C AATTTCTT C . . C . . . . . CTTC G AA . . . . . . . C . C . . . . TTTAAATTTAAAC . . . . . . . TAT . . TG C C . . . . . . . . . . . . . A T . . . C . . . GTTTTGATATCATATAT . . .
blockSeqs : . . . . . . . . CAAGAGAAATTTGTAAA . T . . . . . A . . . . . A . . . . . A TT A . A TATAT CT . . . CTTAA . . TGCA CAA . . . . . CGA TGCA . . . . . CTC C . . . . GTTGCGTTTTTACTTTAT . . . . . . A . . . . . . . . . . C AATC C . . C . . . . . CC T GA . . . . . . . . . . . . . . TTTAAATTAAAC . . . . . . . TT . . GG C T . . . . . . . . . . . . . A . . . . . . . . CCTTTCATATCATGTA . . .
blockSeqs : . . . . . . . . AAA . T . . . . . G . . . . . A . . . . . A TT G . G TAAAT CT . . . TTAA . . TGCA AA . . . . . CGT CCA . . . . . CTG A . . . . GTTGCGTTTTACTTTTA . . . . . . T . . . . . . . . . . N NNNN N . . T . . . . . CC T AA . . . . . . . . . . . . . . TTTAAATTAAAT . . . . . . . TT . . G C C . . . . . . . . . . . . . A . . . . . . . . TTTTCTATATCATTAA . . .
blockSeqs : . . . . . . . . AAA . A . . . . . A . . . . . A . . . . . A TT G . G GTAT CT . . . TTAA . . TGCC A . . . . . CGA GCA . . . . . CTC C . . . . AAATGTTATGGTAT . . . . . . C . . . . . . . . . . N NNNN N . . N . . . . . CC T AA . . . . . . . . . . . . . . TTTATATCATTC . . . . . . . TT . . A C C . . . . . . . . . . . . . A . . . . . . . . GTTTTGATATCATATA . . .
blockSeqs : . . . . . . . . CAA . T . . . . . A . . . . . A . . . . . A CT G . A TAA CT . . . TT . . TGCA C . . . . . CAT GCA . . . . . CTG C . . . . TTTATAT . . . . . . C . . . . . . . . . . C AATC C . . N . . . . . NN T AA . . . . . . . . . . . . . . TTTGAATTAAAT . . . . . . . TT . . G C A . . . . . . . . . . . . . C . . . . . . . . ATA . . .
blockSeqs : . . . . . . . . AAG . C . . . . . A . . . . . A . . . . . A CT G . A TAA CT . . . . . . TGCA . . . . . . CGT GGT . . . . . C C . . . . GTTG . . . . . . C . . . . . . . . . . C AATC C . . T . . . . . CC T AA . . . . . . . . . . . . . . TTTAAATTAAAC . . . . . . . TC . . G C C . . . . . . . . . . . . . T . . . . . . . . GTT . . .
blockSeqs : . . . . . . . . CA . T . . . . . A . . . . . . . . . . . A T . . A AAT C . . . . . . TGA . . . . . . CGT GGT . . . . . . A . . . . GTAT . . . . . . C . . . . . . . . . . N NNNN N . . G . . . . . CC T A . . . . . . . . . . . . . . TTAAATTAAAA . . . . . . . TC . . G . C . . . . . . . . . . . . . T . . . . . . . . GTA . . .
blockSeqs : . . . . . . . . CA . T . . . . . . . . . . . . . . . . . . . . . G AAT T . . . . . . G . . . . . . AGT GA . . . . . . . . . . . GTAT . . . . . . C . . . . . . . . . . N NNNN N . . T . . . . . TC T . . . . . . . . . . . . . . . TTTAAAC . . . . . . . TT . . G . . . . . . . . . . . . . . . A . . . . . . . . TA . . .
blockSeqs : . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . GA G . . . . . . . . . . . . . . . . . . N . . . . . . . . . . . AA . . . N . . . . . . T . . . . . . . . . . . . . . . TTTAAAC . . . . . . . TT . . G . . . . . . . . . . . . . . . A . . . . . . . . GT . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . A . . . N . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ** CAA****************************************** ** A* TT* G* G* TAAAT****** CT* ** TTAA******* TGCA*************** AA********* GCA*** **** CTC* ** C** AATC******** ** TTTAAATTAAAC****************************** ** TT********* G** ** ** ** GTTTA******************************************
originalCons : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AAT-A-----A-TGC-CTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-GCA--------------CCCCCCCCCCC-----A-----TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---AT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCA----AA----TCTCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGT------T-----T----T----------AAA-----C-----GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-A-------------GT--------------T-----------------ACCGAC-CGCC-TTC-TGGCGGC
finalCons : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATCAA------------------------------------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AATAAAT------GCCT-TTTGTTAATTCC--GCAA--CTTCGA-CTTTAA-------TT-GTTTA-CCAAGATTCGAAATGCA---------------CCCCCCCCCCCAA---------TAATAATAATGTTTT-GA---A-CC-C-TCAAC-GT---ATGCA---TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCAAATC--------TCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGTTTTAAATTAAAC------------------------------GC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-ATT---------TTTTAAA-TGGG----AAAG--CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTTA--CT-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TTCGCAG-AAACAC-A-TAACC-ACTTA-T-AGTTTA------------------------------------------ACCGAC-CGCC-TTC-TGGCGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): ATTTACCACTTACAGTTTTCATATCATATAACCGACCGCCTACTGTCGGCCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 777777777777777777777777777777777777777777777 1111111111 33333333333 3333333333333333333333333 11111 111111 1111 99999999999999999999999999999999999999999999999999999 111111111111 111 1 111 111 00000000000000000000000000000000000000000000000000000
lowQualScore : 3 3 55 4 4 55 3 3 777777777777777777777777777777777777777777777 3 4444444444 44 3 7777 555 6 55 3 44 3 3 3 999 3 3 3 3 3 1 666 55 3 77 3 77777 55 44 55 3 33333333333 3 3 0000000000000000000000000 4 33333 3 3 3 3 444 3 0 444444 44 3 3 6 9999 6666 8 3 3 3 3 11111111111111111111111111111111111111111111111111111 3 3 3 44 3 3 444 3 3 6 3 3 3 3 77 3 3 2 666666666666 1 3 3 888 44 3 3 3 3 6666666 1 33 3 3 3 3 3 3 3 88 666 88 3 3 3 3 88888 0 3 44 3 55 88 88888 3 44 3 99999999999 3 7777 000 0 000 3 3 3 3 44 3 3 3 44 3 3 555 44 44 000 44 3 3 3 6 2 333 00000000000000000000000000000000000000000000000000000 2 2 2
lowQualScore : . . .. . . .. . . ............................................. . .......... .. . .... ... . .. . .. . . . ... . . . . . . ... .. . .. . ..... .. .. .. . ........... . . ......................... . ..... . . . . ... . . ...... .. . . . .... .... . . . . . ..................................................... . . . .. . . ... . . . . . . . .. . . . ............ . . . ... .. . . . . ....... . .. . . . . . . . .. ... .. . . . . ..... . . .. . .. .. ..... . .. . ........... . .... ... . ... . . . . .. . . . .. . . ... .. .. ... .. . . . . . ... ..................................................... . . .
lowQualScore : 6 6 00 0 0 55 3 3 111111111111111111111111111111111111111111111 3 2222222222 66 3 1111 888 7 88 3 66 3 3 3 111 3 3 3 3 3 2 000 11 3 00 3 44444 77 66 00 6 33333333333 6 6 1111111111111111111111111 0 22222 6 6 6 6 111 6 3 222222 66 3 3 7 6666 4444 8 3 3 3 3 55555555555555555555555555555555555555555555555555555 3 3 3 66 1 1 555 1 1 2 1 1 1 1 33 1 3 0 222222222222 2 3 3 555 66 3 3 3 3 1111111 2 55 6 6 6 6 6 6 6 66 444 66 6 6 3 3 11111 4 3 66 3 00 66 33333 3 66 3 33333333333 3 1111 222 8 555 3 3 3 3 66 3 1 1 22 3 3 888 66 88 000 66 3 1 1 2 9 666 22222222222222222222222222222222222222222222222222222 7 7 9
consensus : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AA-TAA----ATGCCTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-G----CA--------------C-CCCCCCCC-CC---AATAA-TAATAATGTTTT-GA-A-CC-C-TCAAC-GTAT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCA----AA----TCTCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGTTTT---AAA-TT--AAACGC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTT-A--CTTTA-TTTT-TCT---A--CA-CATAA---TAGG--TT-CGCAG-AAACAC-A-TAACC-ACTTA-T-AGT---------------T------------T-----------A----------ACCGAC-CGCC-TTC-TGGCGGC
Reference ( family-1712 ) : AAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AA-TAA----ATGCCTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTA-CCAAGATTCGAAAT-G----CA--------------C-CCCCCCCC-CC---AATAA-TAATAATGTTTT-GA-A-CC-C-TCAAC-GTAT--GCA-TTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TCTCC-GCA----AA----TCTCCGAC-GG-AGACAGC--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TT-GCA-TC-A-TGTTTT---AAA-TT--AAACGC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTTCCCC--CA-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATCTTT-A--CTTTA-TTTT-TCT---A--CA-CATAA---TAGG--TT-CGCAG-AAACAC-A-TAACC-ACTTA-T-AGT---------------T------------T-----------A----------ACCGAC-CGCC-TTC-TGGCGGC
gi|1 : AAACACGCTTGACGGCAGC-GT--CAA---GGACGGCCGC-AAACCGCCACTTTT-TTC-ATC--------------A--------------AGAGAAATTTTTAA-CA-TGTTTC---------ATTGGCAATGAT-CATA----TT---TGACAT-TCTAGCTCAA--CAT-TG-TA-CAATATTTA--AAA-AACGCTTTGAA--T-AATTTTTAA-GG-TACAGAACTTTTTCTGGCG-TAATAA-TAA----ATGC--TTAGTTAATAAC--GGAAAATTTCGA-CT-TT--ATA---TT-GTTTA-CCAAG-TTCGAAA--G----CAGCCCCCCCCCCTCCC-CCCTCCCC-CCGATAATAA-TAATAATGTTTTTGA-A-CCGC-TCAAC-GTATTGGCA------ACA-C------CTTAGAA--TATAC-ATGAAGCTTTTA-TC-GAAA-ATAAA-T-GTAATAA----------G--------------TTTGCGTTTTACATTTAT----------TG-GTATTCAGCGCGAAATAATT-T-AGTTGGCGCA-GAAC-AACCGA-GGGTCGG-C--TGATCTCCCGCA----T-----TATCCAACCGG-AGACAGT--CGAGTGGGTCT-CGAGGC-GAGAGG--C---TCGCATCGA-AGCAATGAG-AT-ATT-G-C-TGCA-TTACGATTG-GC--TGTTTTA---TTC--TTGGCA-TC-ATTGTTTT---AAA--T--AAACGCGCTTTTTCAA--ACTA-AAAAT-----TA-ATAT--AT-AATTTT-T----TTTTAAA-TGGG----AAAGG-CATTT-CCC--CA-CTTA-A-GAAAGCCA-GCAAATTACACTTGCTAATCTTT-AGTCTTTT-TTTT-TCT---A--CA-CATAA---TAGGCTTT-CGCAG---ACAC-A-TAACC-ACTTA-T-AGTTTTTCATATCATATAT------------T-----------A----------ACCGACGCGCC-TTCTTGGCGG
gi|10 : aagAAACACA-TTGACGCAAAC-AT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATCGAGAGAAATTTGTAA--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CACAATTTC---AA-AAC-CTTCGAA-ATAAATGTTTAA-GAGTAGA-AACTTTT-CTG-CG-TAG-AA-TAA---------------TAA-TCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCATGATTCG----------------------------CCCCCCCC-CC---AATAA-TAATAATGTTTT-GA-G-CC----------------------------CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-CG-AA----------GTTGCGTTTTACTTTT---------------AT----------TG-GCAT-CA-CGCGA--TAATT-T-AGT--AC-CA-GA-C-ACCCGA-GG-ACGG-C--TG-TTTCC-GCAAATTAA----TTTTCAAC-GG-AGACAGC--CGAGTG--TCT-CGAT-C-GA-AGC--C---TAGCATTAATAGCAATGA
gi|11 : CA-TTGACGCAGGC-GT--CAAAA-GAACTGTTGC-AAACC--CACTTGT-TTC-ATC--------------ATGAGAAATTTGTAAA--------------CA-TGTTTT---------AT--GCAATAAG-CAAA----TT---TAACAT-TCTA-TT-AA--CAT-TG-TA-CAATATTT---GAC-AAC-CTTTGAA-ATGTATTTTTAG-GGGTACA-AACTTTT-CTG-CG-TAG-AA-TAA----ACG-ATTTTGTTAATTCC--GCAA--AATCGA-CT-----------TT-GTTTG-CCAAGATTCGAAAT-G----CA--------------C-CCCCCCCCTCC-----CAA-TAATGATGTTTT-GA-A-CT-C-TCAAC-GAAT--G-----------------CACTGAAAA-ATATGC-ATG-----------------CATACA-T-G-AA-AA----------G--------------T---------------TG----------CG-TTAT-CA-CGCGG--TATTT-T-AGC--AC-CA-GA-C-ACCCGA-GG-TCGG-C--TG-TC
gi|12 : tAAACACA-TTGACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A--------------AGAGAAATTTGTAAACA-TGTTTCTATTGTTTCAT--GCAATAAT-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTCAAAAA-AAC-CTATGAA-ATGAAATTTTAA-GGGTAAA-AACGTTT-CTA-CG-TAA-AA-TAAATTGATGCCTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-AAATTT-GTTTA--CAAGATTCGAAATAG----CA--------------A-CCCCCCCC-CC---AATAATTAATAAT
gi|13 : acaagTT--ACA-CTGAACACGTAGAA-ATATGC-A-------------------CATACA-T-G-AA-CATTT-------A--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGA--AT-CA-GA-C-ACCCGA-GG-TCGT-C--TG-TCTCC-GCA----AA----TCGCCGAC-GG-AGACAGC--TGAGTG--TTT-CGAG-C-GA-AGC--C---TCGCCCCGGGAGCC----------TC-G-C-TGCA-TTACGATTA-GC--TATTTCA---TTC--TT-GCA-TC-A-TATTTT---AAA-TT--AAACGC-CTTTTCTAA--ACT--AAAAT-----AG-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CATTT-CCC--CA-C-TA-A-GAG--TCA-ACAAATTACACTT-TTAATCTTT-A--CTTTA-TTTT-TCT---A--CA-CATAaagattataatttaccactcaggttaaatccatttatca
gi|14 : TT-T-AGT--AC-CA-GAAC-ACTCGA-GA-TCGG-C--TG-TCTCC-G-A----AATTTCTTTCCGAC-GGAAGATAGCTTCAAGTA--TCT-CGGG-CAAA-AGC--CTGGTGGCATCAATAACAATGAGTAT-ATT-G-CTTGCAGTCACAGTTG-G----GCCATAACTTTT--TT-GCA-CC-A-TGTATTAGGAGA-TTACAAATGC-CTTTTCta
gi|15 : gcgttatactatattttttaggacgcgtcagagtaaagg-A-TGTTTT---AAA-TT--AAATGC-CTTTTCTAA--TCT--CAAAT-----AA--TA---AT-T----T-T----TTTTAAC-CAGA----AAA---CATTTCCCC---A-C-AG-A-GAA--CTA-AAAAATTATACCT-TTAAACTTT-A--CTTCT-TTTT-ACT---A--CA-CATAA---TAGT--TT-TGCAG-AAACAC-A-AAACA-ACTTA-C-ACC---------------T------------TTCATATCATGTA----------ACCGAC-CGAC-TTC-TG
gi|16 : AATACA-TTGACGCAAGC-GT--CAAGA-GAACGGCCGC-AAACC--CACT--------AT---------------------------------------------CA-TGCTTT---------AT--GCAATAAT-CATA----TT---TAAC-----------------------------ATTTC---AA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTTT-CTG-CG-TAG-AA-------------------TAATTCC--GCAT--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-G----CA--------------C-GCCCCtaggccg
gi|17 : ACGATTT-GC--TATTCTA---TTT--TT-----T----TTTTTT---ATA-TC--ATTCGC-CTTT-CTAA--ACT--TAGAT-----AA-ATAT--TT-A----T-T----TTCTAA--TTGG----AAA-A-CATTTCCCC--T--C-TA-A-GAA--CCA-ACAAATTACACCT-TTAATC-GT-A--C-TTA-TTTT-TCT---A--CA-CATAA---TAGG--TT-CGCAG-A
gi|18 : --------------T---------------AT----------TT-GTAT-CA-CTAGA--TAATT-C-AGC--AC-CA-GA-C-ACCCAA-GG-TCGG-C--TG-TCTCC-GCA----AA---------------------GT--CGAGTG--TCT-CGAG-C-GA-AGC--C---TCGCATCGATAACGATGAG-AT-GTT-G-C-TGCA-TTtg
gi|19 : acataaaaaaaattactacttt-TTC-GTA--------------A--------------A--------------CA-TGTTTA---------AT--GCAATAAT-CATA----TT---TAACAT-TCTG-CT-CA--CAT-TG-TA-CAATGTTTC---AA-AAT-CTTTGAA-ATGAGTATTTAA-GGATACA-AACTT-----------------TAA----ATGCC-TTTGTTAATTCC--G
gi|2 : gaaaAAACACA-TTGATGCAAAT-GT--CAAAA-GAACGGCCGC-AA-CC--CAATTGTATTT-TTA--------------A--------------A--------------CA-TGTTTT---------AT--GCAATAAT-CATA----TT---TAACAT-TCT--CT-AA--CAT-TG-TA-CAATATTTC--AAA-A-C-CTTTGAA--TGAATTTTTAA-GGGTACA-AATTTTT-CTG-CG-TAG-AA-TAA----ATGCCTTTTGTTATATCC--GCAA--CTTCGA-CT-----------TT-GTTTA-CCAAGATTCGAAAT-GCCCCCC--------------C-CCCCCCCC-CC---AATAA-TAATAATGGTTT-GA-ACCC-C-TCAAC-GTAT--GCA-TTT--ACA-CTCAAC-CTTA-AA-ATATAC-ATGAA----CTACTC-GAAA---ACA-T-G-AA-AA----------G--------------TTGC------------GTTTTACTTTTATG-GTAG-CA-CGCGA--TAATT-T-TG------CN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNN-NNNN-N-NN-NNN--N---NNNNNNNGATA-------------TT-G-C-TGCA-TTGCGATTG-GCTGTGTTTTA----TC--TT-GCA-TC-A-TGCTTT---GAA-TT--AAATGC-CTTTTTT-A--ACT--AAAAT-----TA-ATAT--AT-A----TATAATATTTTAAG-TGGG-----AA-G-CATGT-CCC--CA-C-TA-A-GAA--CC-----AATTA----------------A--CTTTA-TTTT-TCT---T--CA-CATA-------G--TT-CGCAGAAAACAC-ATTAACC-ACTTA-C-AGT---------------TTTCATAATCATAT-----------A----------ACCGAC-CGCC-CTC-TGGTG
gi|20 : aggACTT-TTAATCTTTTA----TTA-CTTT-TCT---AGGCATCATAACATTAGG--TTTCGCAG-AAACAT-ACTAACCGACTTAGT-ATT---------------T------------TCTATATCATTAA----------ACCGAC-CGCCTTTC-TGccagccgg
gi|21 : gtAGG--TT-CGCAG-AAACAC-A-TAACC-ACTTT-A-AGT---------------TTTGATATCATA-T-----------A----------ACCGAC-CGCC-ATC-TGGCGGCtgg
gi|22 : ACC-ACTTA-C-AGT---------------T------------TTCATATCATATA----------ACCGAC-CGCC-TAC-TGTCGGCcggtaa
gi|23 : atttC-A-TAATC-A--TA-T-A------------------------------T-----------A----------ACCGAC-CGCC-TTC-TGGTGGCcggt
gi|24 : acttacaccttt-AAATGC-A-GAGCC-ACTTA-A-AAT----------------------------------------A----------ACCGAC-CGCT-TCC-TGGCGGCccggta
gi|25 : GAA----CTACTG-GAAAAATACA-T-G-AA-AA----------G--------------T---------------ctgta
gi|26 : ------------T-----------A----------ACCGAC-CGCC-TTC-TGGCGGCtgcgttttacttttatt
gi|27 : tagttttcatatcataAAACACA-TTGATGCAAGC-GT--CAAAcggta
gi|3 : aatatcacaagAAACACA-TTGACGCAAGC-GT--CAAAA-GAACAACCGC-AAACT--CACTTGT-TTC-ATC--------------A--------------A--------------CA-TGTTTC---------AT--GTAATAAT-CATAATTATT---TAACAT-TCTA-----A--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-AACTTCT-CTG-CG-TAA-AA-TAT----ATGCCTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTTTT-CCAAGATTCGAAAT-G----CA--------------C-CCCCCCCC-CC-----TAA-TAATAATGTTTT-GA-A-CC-C-TCAAC-GAAT--GCA-TTT--ACA-CTCAACGCTCAGAA-ATATAC-ATGAG----CTA----GAAACATACA-T-G-AA-AA----------G--------------T---------------AT----------TG-GTAT-CA-CGCGA--TAATT-T-AGC--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-C-GA-AGC--C---TCGCATCGATAGCAATGAG-AT-ATT-G-C-TCCA-TTGCGATTG-GA--TGTTTTA---TTC--TT-GCA-TC-A-TGTT---------TT--AAACGC-CTTTTCTAA--ACT--AAAAT-----AA-ATAT--AT-A----T-T----TTTTAAA-TGGG----AAA-G-CGTTTCCCC--CA-C-TA-A-GAA--CCA-ACAATTTACACTT-TAAATCTTT-A--CTTTACTTTT-TCT---A--CC-CATAA---TAGG--TT-CGCAG-AAACAC-A-TAACC-ACTTA-T-AGT---------------T-----------------------------------ACCGAC-CGCT-TTC-TGGCGGC
gi|4 : AAACACA-TTAAC-CAAGCCGT--CAAAACGAACGGCCGCGAAACC--CACTTGT-TT--ATC--------------A----------------------------------------------------------T-CATA----TT---CTACAT-TCTA-CT-AA--CAT-TG-TAACAATATTTC--AACCAAC-CTTTGAATATGAATTTTTAA-GGGTACA-A--------------TA------AA----GTGCCTTTTGT-AATTCC--GCAA--CTTCGAACTCTT--A-A---TTCGTGTA-CCAAAGATCGAAAT-G-----A--------------C-TCCCCTCC-CC---AATAA-TAATAATGTTTC-GATA-CC-C-TCAACCATAT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAA-TTGAA----CTAC-------------------------------------------------------------------------------GTAT-CA-CGCGA--TAATTCT-AGC--TC-CA-GA-A-ACCCGAAGG-TCGG-CCTTG-TTTCC-GCA----AA----TCTCCGAC-GG-AGACTGT--CGAATG--TCT--GAG-C-GA-CCCTTC---TCGCATCGATAGCA-TGAG-ATTATT-G-C-TGCA-TTACGATTG-GCC-TGTTTTA---TTCC-TT-GCA-TCTA-TGTTT----AAA-TT--AAAATG-CTTTTCTAA--ACT--AAAAT-----AA-AT-T--AT-A----T-C----TTTTAAA-TGGG----AAA-AACATATCCCT--AAAC-TA-C-GAA--CCCCACAAAT-AAACTT-TTTATCTTT-A--CTTAA-TTTT-TCT---A--CT-CATAA---GAAG--TT-CTCGC-AAAAAC-A-TAACC-ACTTA-T-A------------------------------T-----------A----------ACTA---CG-C-TGC-TGGCGGC
gi|5 : gAAACACA-TTAACGCAAGC-GT--CAAAA-GAACGGCCGC-AAACC--CACTTGT-TTC-ATC--------------A----------------------------------------------------------T-CATA----TT---TAACAT-TCTA-CT-AA--CAT-TG-TA-CAATATTTC--AAA-AAC-CTTTGAA-ATGAATTTTTAA-GGGTACA-A---------------------TAA----ATGCCTTTTGTTAATTCC--GCAA--CTTCGA-CT-TT--A-A---TT-GTGTA-CCAAGATTCGAAAT-G----CA--------------CTCCCCTCCC-CC---AATAA-TAATAATGTTTC-GA-A-CC-C-TCAAC-ATAT--GGT-TTT--ACA-CTCACCACTTAGAA-ATATAC-ATGAA----CTACc
gi|5 : caag-----AA-ATAT--AT-A----T-C----TTTTAAA-TGGG----AAA-G-CATATCCCT---A-C-TA-A-GAA--CCA-ACAAATAACACTT-TTAATCTTT-A--CTTAA-TTTT-TCT---A--CT-CATAA---GAAG--TT-CGCAA-AAACAC-A-TAACC-ACTTA-T-A------------------------------T-----------A----------ACCTAC-CGCC-gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaatatatatcttttaaatgggaaagcatatccctactaagaaccaacaaataacacttttaatctttacttaatttttctactcataagaagttcgcaaaaacacataaccacttatataacctaccgcc
gi|6 : caagaaacacattaacgcaagcgtcaaaagaacggccgcaaacccacttgtttcatcatcatatttaacattctactaacattgtacaatatttcaaaaacctttgaaatgaatttttaagggtacaataaatgccttttgttaattccgcaacttcgactttaattgtgtaccaagattcgaaatgcactcccctcccccaataataataatgtttcgaaccctcaacatatggttttacactcaccacttagaaatatacatgaactacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACTTGT-TTC-AT---------------A--------------A--------------CAGTGTTTT---------AG--TTAATAAT-CATA----TTATTTAACATATCG---T-AA--CAT-TGATA-CA-TATTTC--AAA-AAC--TTTGAA-AGCAATTA--AA-GGGTACA---CTTCT-CT--CG-TAA-AAGTA------TGCCTTTTGT-AATACC--G-AA--CTT-GA-CT-TTTTA-A---TT-GTTT--TCAAGATTCGAAATTG----CA--------------C-CCCCCCCC-C------TAA-TAATAATGTTTT-GA-A-CC-C-TCAA--GAAT--G-A-TCT--ACA-CTC-ACGCTCAG---ATATACAATGAG----CTA-----GAACATTC--T-G-AA-AA----------G--------------T---------------AT----------TG-GTAG-CA-CGCGA--TAATT-T--GC--AC-----A-CAACCTGA-GG-TCGG-CT-TG-T-TCC-G-A----AA----TCT-CGAC-GG-AGACAAG--CGAGTG--TCT-CGAG-C-GA-AG-------TCGCATC-ATAGCAATG-G-AT-ATT-GAC-TCCC-ATGCGATTGTGG--TGTTTTA---TTC--TT-GCATTC-A-TGTT---------TT--AAACGC-CTTTTCTAGATACT--AAAAT-----AA-ATATCCATCA----T-T----TTT--AA-TGGG----AAATG-CGTTT-CCC--CA-C-TA-A-G-A--CCA-ACAATTT--ACTT-TAAATCTTT-----CTTA-CTTTGTCT---A--C-----AA---TAGG--TT-CGCAG-AAA-AC-A-TAACC-ATT---T-AGT---------------------------------------------------ACCGAC---CT-TTC-TGGC
gi|7 : CA-TTGACGCAAGC-GTTTCAAAA-TT------------CC--CACTGTT-TTCTGTA--------------A--------------G--------------CA-T--TTT---------AT--GCA-TAATTCATA----TT----AACATCTCTA-CT-AAAACATCTG-TA-CAATATTTC--AAA---C-CTTTGAA-ATGAATTT--AATAGGTACA-AACTTT--CTG-CGGTAG-AA-TAA----ATGC-TTTTGTTAATTCCCGGCAA--CTTCGA-CT-TT-----------GTTTAACCAA--TTTTAAA--G---------------------------------------AA-TAATAATGTTT--GA-A-CC-C-TCAAC-GTATT-GCA-TTTTTACAGCTCAACACAAGGAA-A-ATACGATGAAA---CTACTCCGAAA-ACACA-TTG-AA-AAAAATGTTATGG--------------T---------------AT----------TTTATAT-CA-CGTGA--TAATT-TTAGC--AC-CCTGA-C-ACCCGA-AG-TCG--C--TG-TCTCC-GCA----A-------TCCGAC-GG-AGTCAA-------------T-CGAG-T-G-----------TCGC--CGA--GC---GAA-GC-CTC-G-C---CA-T--CGAT-A-GC--TGTTTTA---TT------------------------------------GC-CTTTTTCAA--ACTCTAAAATTTTAAAA-ATAT--TT-A----T-T----GCTAAAA-TGGGGGGGAAA-G-CATTCCCCCGCCA-C-TA-A-GAA--CCA-ATAAATTACACTT-TT--TCTTT-A--CT
gi|8 : nnTGA-TAATAATGTTTT-GA-A-CC-C-TCAGC-GTAT--GCAATTT--ACA-CTCAACACTTAGAA-ATATAC-ATGAA----CTACTC-GAAACATACA-T-G-AA-AA----------G--------------TTGCATTTTACTTTT-AT----------TG-GTAT-CA-CGCGA--TAANN-N-NNN--NN-NN-NN-N-NNNNNN-NN-NNNN-N--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNNNCGAG-C-GA-AGC--C---TCGCATCGGTAGCAATCAG-AG-ATT-G-T-TGCA-TTACGATTG-GC--TGTTT-A---TTC--TT-GCA-TC-A-TGTTTT---AAA-TT--AAACGC-CTTTTCTAA--ACT------------------------------------TTTTAAA-TGGG----AAA-G-CATTTCCCC---A-C-TA-A-GAA--CCA-ACAAATTACACTT-TTAATATTT-A--CTTTA-TTTT-TCT---A--CA-CGTAA---TAGG--TT-CGCAG-AAACA--------C-ACTTA-T-AG-----------------------------T-----------A----------ACCGAC-CGCC-TTC-TGGCGGC
gi|9 : ataaatgttgcttggtcatcattttcatatggcgattcctcgtatttagttcacggatttcatattTTT-GA-A-CC-AATCAAA-GTATT-GCA-TTT--ACA-CTCAACACTTAGAATATATAT-ATGAA----CTACTG-GAAAAATACAAT-G-AA-------------G--------------TTGCGTTTTTACTTT-AT----------TG-GTAT-GA-CGCGA--TAATT-T-AGC--AC-AA-GA-C-A-CCGA-GT-TCGGNN--NN-NNNNN-NNN----NN----NNNNNNNN-NN-NNNNNNN--NNNNNN--NNN-CGAG-T-T--AGT--C---TCGTATCGATAGCAATGAG-AT-ATTGG-C-TGCA--TACGATTG-CC--TG-CTTA---TTCTTTT-GCA-TC-A-TATTTT---AAATTT--AAACGC-CTTTTCTAA--ACT--AAAAT-----AATATAT--AT-A----TAT----ATTTAAATTGGG----AAAGG-CATTT-CCC--CA-C-TATATGAA--CCA-ACAAATTACAC-T-TTAA-CTTT-A--CTTTA-TTTT-TTTCTAA--CA-CACAAT--TAGG--TT-CGCAG-ACACACTA-TTAAC-ACTTT-TAAGT---------------T------------TTG---------ATATCATATATACCGAC-CGCA-TTC-TGGCGGCcggtaa