lowQualScore : 22222 99999999999999999999999999999999999999999999999999999 22222222 555555555555555555555555 11 1111 1111 11 1111 111 1111111 1
lowQualScore : 88888 11111111111111111111111111111111111111111111111111111 5 22222222 555555555555555555555555 5 33 0000 0000 5 5 77 5 9999 5 111 9999999 0 8 8 8 3 0
lowQualScore : ..... ..................................................... . ........ ........................ . .. .... .... . . .. . .... . ... ....... . . . . . .
lowQualScore : 55555 00000000000000000000000000000000000000000000000000000 7 55555555 222222222222222222222222 0 66 5555 6666 0 0 55 0 0000 7 777 0000000 8 0 0 0 2 0
consensus : GGCGGAT---TTAAGGGG-CGGGGCC-----GGCGCACCC---CT-----------TAA------AA----TTTACC-AA-GTGTAATATATATAT-AA----------TCCTTAT---TT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
Reference ( gi|5 ) : GGCGGAT---T-AAGGGG-GGGGGTG-----GGCGCACCC---CT-----------TAA------A-----TTTACC-AA-GTGTAATATATATATTAA----------TTTTTAT---TT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-AGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
gi|6 : GGCGGAT---T-TAGGGG-C----TCAC---GGCCCCCCC---CC-----------TAA------A-----TTTACC-AA--TGTAG-ATATATA--AA----------TCTT-AT---TT-TTCTCTA-GGGGAA-A-TTAATAAA----TTA-CA-CA-TGGC-GCCCTT---CT-T---
gi|12 : GGCGGAT---TTAAGGGGTGGGGGCTCACCCGGCGC-CCC---CTCCCCCCCCCCATAA------A-----TTTACC-AA-GTGTAAct
gi|1 : GCGGATATTT-AAGGGT-CTGTGCA-----G-CACACCCTTCCT-----------TAA------AAT---TTTACC-AA--TGTG-TATA-ATAT-AA----------TCCTT-T---TT-TTCACT--GAAAAA----TAATAAA----TTA-CA-CACCGGC-GCCTC-------T---AAATT----TTTGT-AAAGAATGTATATATTCAGTT
gi|11 : gtGGAT---TTAAGGGG-CGGGGTG-----GGCGCACCCGG-CG-----------TAATATAATA-----TTT----AA-GTGTAATGTATA-A---------------TCTTAT---TT-TTCAttttttttcttatgcatgattttcaaaagttaatccatccaagaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagcgcccccaacaccctctgcctatatgatgttgcgccccaccctacactcgatatttctgattgaatccgcc
gi|3 : CCC---CT-----------CAA------AAAACATTTACT-AAAGTGTAA-ATATATA--AA----------TCTT-AT---TT-TTCACTGCGAAAAA-A-TTAATAAA----TTG-C--------C-ACACTT---CT-TGAGAA--TTTAATTTGCAAAAG-AT-TATA-A-TCAGT
gi|4 : ccccccTTACC-AATATGT--TAAATATATTA------------CCTTAT---TTCTTCACC--GGAAAA-A-ATAATAA-----TTA-CA-CA-CGGC-GCCCCCT--CT-T---AA--T----TT-GT-AAAG-AT-TATATA-TCAGTTGgggtttattttccttaacgatgtatttcaaaaaaaattcctc
gi|7 : TTACCCAA-GT------TATATATTAAATTTCTTTTTTTTTCATATTTT-TTCACT--GGAAAA-ACTTAATAAA----TTA-CACCA-ATGC-GCCCCC---CT-gtttttttttttcttaaacgatgtatttgaaattgaaattaat
gi|9 : T-TTCACT--GGAAAA-A---AATAAAATAATTAACA-CA-CGGTTGCCCCCT--CTCT---AA--T----TTTGT-AAAG-AT-TATATA-ACAGTCGcttc
gi|17 : -TTCACT--GGAAAAAA-TTAATAAA----TTA-CA-CA-TGGC-GCCCCC---Caa
gi|8 : A-A-TTAATAAA----TTA-CA-CA-CGGT-GCCCCCCCTCT-C---AA--T----TTTGT-AAAG-GT-T
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGACACATGGGGGCCTCAAGACCTCCCCCCGCTCATATGGATGTTGCCCCCCCCTAACTCGAATTTCTGGATCCGCCCT
Unaligned ( gi|10 ): CACTGGAGGCTCCAAAACCCCCTATATATGTTACCCCCACCCCACCCTCAACTCGAATTTCTGGATTCGCTCCT
Unaligned ( gi|13 ): ACCCCCTGCCCTCATATGAGTTGCGCCCCCTAACTCGAATGTTCTGGATCCCCCCTG
Unaligned ( gi|14 ): ACCATATTGATGTTGCGGCCCCACCCCTAACTCGGAATTTCGGATCCGCCCCTG
Unaligned ( gi|15 ): ATGTGATGCCCCCCCCCCCTAACTGGAATTCCTGGATCCGTCCCT
Unaligned ( gi|16 ): ATATGATGTTGCCCCCCTAACTCGAATTCTGGGATCCGACCT
Unaligned ( gi|18 ): CCCCCCTAACTAGAATTTCGGATCCGCCCCTGATTG
Alignments
lowQualScore : 11 44444444444444444444444 222 222222222 11 11 2222222 11 111 111 2222222
lowQualScore : 11 0 0 3 33333333333333333333333 0 000 6 444444444 5 5 88 11 1111111 4 11 7777 9999 4 4 4 4 666 5 000 2222222 6 6 6 0 8
lowQualScore : .. . . . ....................... . ... . ......... . . .. .. ....... . .. .... .... . . . . ... . ... ....... . . . . .
lowQualScore : 00 8 8 2 88888888888888888888888 6 888 7 222222222 7 7 00 88 5555555 4 99 3333 4444 4 4 4 4 777 0 000 5555555 7 7 7 8 0
consensus : GGCGGAT--TTAAGGGGCGGGG------C---GGGCG--------CACCC---CTTA-A---AA----T-TT-ACCAA-GTGTAATATATATAT-AATCCTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
Reference ( family-1665 ) : GGCGGAT--TTAAGGGGCGGGG------C---CGGCG--------CACCC---CTTA-A---AA----T-TT-ACCAA-GTGTAATATATATAT-AATCCTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
gi|1 : GCGGATATTTAAGGGTCTGTG------C----AGCA--------CACCCTTCCTTA-A---AA----T-TTTACCAA--TGTG-TATA-ATAT-AATCCTT-TTT-TTCACT--GAAAAA----TAATAAA----TTA-CA-CACCGGC-GCCTC-------T---AAATT----TTTGT-AAAGAATGTATATATTCAGTT
gi|11 : gtGGAT--TTAAGGGGCGGGG------T---GGGCG--------CACCCGG-CGTA-ATATAA----TATT---TAA-GTGTAATGTATA-AT-----CTTATTT-TTCAttttttttcttatgcatgattttcaaaagttaatccatccaagaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagcgcccccaacaccctctgcctatatgatgttgcgccccaccctacactcgatatttctgattgaatccgcc
gi|12 : GGCGGAT--TTAAGGGGTGGGGGCTCACC---CGGCGCCCCCTCCCCCCC---CCCATA---AA----T-TT-ACCAA-GTGTAA
gi|17 : -TTCACT--GGAAAAAA-TTAATAAA----TTA-CA-CA-TGGC-GCCCCC---C
gi|3 : CCC---CTCA-A---AAAACAT-TT-ACTAAAGTGTAA-ATATATA--AATC-TTATTT-TTCACTGCGAAAAA-A-TTAATAAA----TTG-C--CA-CA------CTT---CT-TGAGAA--TTTAATTTGCAAAAG-AT-TATA-A-TCAGT
gi|4 : cccccc-TT-ACCAATATGTTAAATATAT-T-A--CCTTATTTCTTCACC--GGAAAA-A-ATAATAA-----TTA-CA-CA-CGGC-GCCCCCT--CT-T---AA-------TTTGT-AAAG-AT-TATATA-TCAGTTGgggtttattttccttaacgatgtatttcaaaaaaaattcctc
gi|5 : GGCGGAT--T-AAGGGGGGGGG------T---GGGCG--------CACCC---CTTA-A---A-----T-TT-ACCAA-GTGTAATATATATATTAATTTTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-AGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTGgtttttttttttcttaaacgatgtatttgaaattgaaattaat
gi|6 : GGCGGAT--TTA------GGGG------CTCACGGCC--------CCCCC---CCTA-A---A-----T-TT-ACCAA--TGTAG-ATATATA--AATC-TTATTT-TTCTCTA-GGGGAA-A-TTAATAAA----TTA-CA-CA-TGGC-GCCCTT---CT-T---
gi|7 : TTT-TTCACT--GGAAAA-ACTTAATAAA----TTA-CACCA-ATGC-GCCCCC---CT-ct
gi|8 : ttacccaagttatatattaaatttctttttttttcatatA-A-TTAATAAA----TTA-CA-CA-CGGT-GCCCCCCCTCT-C---AA--T----TTTGT-AAAG-GT-Tcttc
gi|9 : T-TTCACT--GGAAAA-A---AATAAAATAATTAACA-CA-CGGTTGCCCCCT--CTCT---AA--T----TTTGT-AAAG-AT-TATATA-ACAGTCGttttttctttaacgattatttcaaaagaaaattaatcagg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGACACATGGGGGCCTCAAGACCTCCCCCCGCTCATATGGATGTTGCCCCCCCCTAACTCGAATTTCTGGATCCGCCCT
Unaligned ( gi|10 ): CACTGGAGGCTCCAAAACCCCCTATATATGTTACCCCCACCCCACCCTCAACTCGAATTTCTGGATTCGCTCCT
Unaligned ( gi|13 ): ACCCCCTGCCCTCATATGAGTTGCGCCCCCTAACTCGAATGTTCTGGATCCCCCCTG
Unaligned ( gi|14 ): ACCATATTGATGTTGCGGCCCCACCCCTAACTCGGAATTTCGGATCCGCCCCTG
Unaligned ( gi|15 ): ATGTGATGCCCCCCCCCCCTAACTGGAATTCCTGGATCCGTCCCT
Unaligned ( gi|16 ): ATATGATGTTGCCCCCCTAACTCGAATTCTGGGATCCGACCT
Unaligned ( gi|18 ): CCCCCCTAACTAGAATTTCGGATCCGCCCCTGATTG
Alignments
lowQualScore : 11 22222222222222222222 222222222222 1111 11 11 2222222 11 111 111 2222222
lowQualScore : 11 0 0 99999999999999999999 0 555555555555 4444 5 5 88 11 1111111 4 11 7777 9999 4 4 4 4 666 5 000 2222222 6 6 6 0 8
lowQualScore : .. . . .................... . ............ .... . . .. .. ....... . .. .... .... . . . . ... . ... ....... . . . . .
lowQualScore : 00 8 8 88888888888888888888 6 000000000000 2222 7 7 00 88 5555555 4 99 3333 4444 4 4 4 4 777 0 000 5555555 7 7 7 8 0
consensus : GGCGGAT--TTAAGGGGCGGGG------CGGGCG--------CACCC---CTTA-A---AA----T-TT-ACCAA-GTGTAATATATATA-TAATCCTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
Reference ( family-1665 ) : GGCGGAT--TTAAGGGGCGGGG------CGGGCG--------CACCC---CTTA-A---AA----T-TT-ACCAA-GTGTAATATATATA-TAATCCTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
gi|1 : GCGGATATTTAAGGGTCTGTG------CAG-CA--------CACCCTTCCTTA-A---AA----T-TTTACCAA--TGTG-TATA-ATA-TAATCCTT-TTT-TTCACT--GAAAAA----TAATAAA----TTA-CA-CACCGGC-GCCTC-------T---AAATT----TTTGT-AAAGAATGTATATATTCAGTT
gi|11 : gtGGAT--TTAAGGGGCGGGG------TGGGCG--------CACCCGG-CGTA-ATATAA----TATT---TAA-GTGTAATGTATA-A-T----CTTATTT-TTCAttttttttcttatgcatgattttcaaaagttaatccatccaagaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagcgcccccaacaccctctgcctatatgatgttgcgccccaccctacactcgatatttctgattgaatccgcc
gi|12 : GGCGGAT--TTAAGGGGTGGGGGCTCACCCGGCGCCCCCTCCCCCCC---CCCATA---AA----T-TT-ACCAA-GTGTAA
gi|17 : -TTCACT--GGAAAAAA-TTAATAAA----TTA-CA-CA-TGGC-GCCCCC---C
gi|3 : CCC---CTCA-A---AAAACAT-TT-ACTAAAGTGTAA-ATATATA--AATC-TTATTT-TTCACTGCGAAAAA-A-TTAATAAA----TTG-C--CA-CA------CTT---CT-TGAGAA--TTTAATTTGCAAAAG-AT-TATA-A-TCAGT
gi|4 : cccccc-TT-ACCAATATGTTAAATATAT--TA--CCTTATTTCTTCACC--GGAAAA-A-ATAATAA-----TTA-CA-CA-CGGC-GCCCCCT--CT-T---AA-------TTTGT-AAAG-AT-TATATA-TCAGTTGgggtttattttccttaacgatgtatttcaaaaaaaattcctc
gi|5 : GGCGGAT--T-AAGGGGGGGGG------TGGGCG--------CACCC---CTT--A---AA----T-TT-ACCAA-GTGTAATATATATATTAATTTTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-AGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTGgtttttttttttcttaaacgatgtatttgaaattgaaattaat
gi|6 : GGCGGAT--TTA-GGGGCTCA-------CGGCCC--------CCCCC---CT---A---AA----T-TT-ACCAA--TGTAG-ATATATA--AATC-TTATTT-TTCTCTA-GGGGAA-A-TTAATAAA----TTA-CA-CA-TGGC-GCCCTT---CT-T---
gi|7 : TTT-TTCACT--GGAAAA-ACTTAATAAA----TTA-CACCA-ATGC-GCCCCC---CT-ct
gi|8 : ttacccaagttatatattaaatttctttttttttcatatA-A-TTAATAAA----TTA-CA-CA-CGGT-GCCCCCCCTCT-C---AA--T----TTTGT-AAAG-GT-Tcttc
gi|9 : T-TTCACT--GGAAAA-A---AATAAAATAATTAACA-CA-CGGTTGCCCCCT--CTCT---AA--T----TTTGT-AAAG-AT-TATATA-ACAGTCGttttttctttaacgattatttcaaaagaaaattaatcagg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGACACATGGGGGCCTCAAGACCTCCCCCCGCTCATATGGATGTTGCCCCCCCCTAACTCGAATTTCTGGATCCGCCCT
Unaligned ( gi|10 ): CACTGGAGGCTCCAAAACCCCCTATATATGTTACCCCCACCCCACCCTCAACTCGAATTTCTGGATTCGCTCCT
Unaligned ( gi|13 ): ACCCCCTGCCCTCATATGAGTTGCGCCCCCTAACTCGAATGTTCTGGATCCCCCCTG
Unaligned ( gi|14 ): ACCATATTGATGTTGCGGCCCCACCCCTAACTCGGAATTTCGGATCCGCCCCTG
Unaligned ( gi|15 ): ATGTGATGCCCCCCCCCCCTAACTGGAATTCCTGGATCCGTCCCT
Unaligned ( gi|16 ): ATATGATGTTGCCCCCCTAACTCGAATTCTGGGATCCGACCT
Unaligned ( gi|18 ): CCCCCCTAACTAGAATTTCGGATCCGCCCCTGATTG
Alignments
lowQualScore : 11 22222222222222222222 222222222222 1111 11 11 2222222 11 111 111 2222222
lowQualScore : 11 0 0 99999999999999999999 0 555555555555 4444 5 5 88 11 1111111 4 11 7777 9999 4 4 4 4 666 5 000 2222222 6 6 6 0 8
lowQualScore : .. . . .................... . ............ .... . . .. .. ....... . .. .... .... . . . . ... . ... ....... . . . . .
lowQualScore : 00 8 8 88888888888888888888 6 000000000000 2222 7 7 00 88 5555555 4 99 3333 4444 4 4 4 4 777 0 000 5555555 7 7 7 8 0
consensus : GGCGGAT--TTAAGGGGCGGGG------CGGGCG--------CACCC---CTTA-A---AA----T-TT-ACCAA-GTGTAATATATATA-TAATCCTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
Reference ( family-1665 ) : GGCGGAT--TTAAGGGGCGGGG------CGGGCG--------CACCC---CTTA-A---AA----T-TT-ACCAA-GTGTAATATATATA-TAATCCTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
gi|1 : GCGGATATTTAAGGGTCTGTG------CAG-CA--------CACCCTTCCTTA-A---AA----T-TTTACCAA--TGTG-TATA-ATA-TAATCCTT-TTT-TTCACT--GAAAAA----TAATAAA----TTA-CA-CACCGGC-GCCTC-------T---AAATT----TTTGT-AAAGAATGTATATATTCAGTT
gi|11 : gtGGAT--TTAAGGGGCGGGG------TGGGCG--------CACCCGG-CGTA-ATATAA----TATT---TAA-GTGTAATGTATA-A-T----CTTATTT-TTCAttttttttcttatgcatgattttcaaaagttaatccatccaagaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagcgcccccaacaccctctgcctatatgatgttgcgccccaccctacactcgatatttctgattgaatccgcc
gi|12 : GGCGGAT--TTAAGGGGTGGGGGCTCACCCGGCGCCCCCTCCCCCCC---CCCATA---AA----T-TT-ACCAA-GTGTAA
gi|17 : -TTCACT--GGAAAAAA-TTAATAAA----TTA-CA-CA-TGGC-GCCCCC---C
gi|3 : CCC---CTCA-A---AAAACAT-TT-ACTAAAGTGTAA-ATATATA--AATC-TTATTT-TTCACTGCGAAAAA-A-TTAATAAA----TTG-C--CA-CA------CTT---CT-TGAGAA--TTTAATTTGCAAAAG-AT-TATA-A-TCAGT
gi|4 : cccccc-TT-ACCAATATGTTAAATATAT--TA--CCTTATTTCTTCACC--GGAAAA-A-ATAATAA-----TTA-CA-CA-CGGC-GCCCCCT--CT-T---AA-------TTTGT-AAAG-AT-TATATA-TCAGTTGgggtttattttccttaacgatgtatttcaaaaaaaattcctc
gi|5 : GGCGGAT--T-AAGGGGGGGGG------TGGGCG--------CACCC---CTT--A---AA----T-TT-ACCAA-GTGTAATATATATATTAATTTTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-AGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTGgtttttttttttcttaaacgatgtatttgaaattgaaattaat
gi|6 : GGCGGAT--TTA-GGGGCTCA-------CGGCCC--------CCCCC---CT---A---AA----T-TT-ACCAA--TGTAG-ATATATA--AATC-TTATTT-TTCTCTA-GGGGAA-A-TTAATAAA----TTA-CA-CA-TGGC-GCCCTT---CT-T---
gi|7 : TTT-TTCACT--GGAAAA-ACTTAATAAA----TTA-CACCA-ATGC-GCCCCC---CT-ct
gi|8 : ttacccaagttatatattaaatttctttttttttcatatA-A-TTAATAAA----TTA-CA-CA-CGGT-GCCCCCCCTCT-C---AA--T----TTTGT-AAAG-GT-Tcttc
gi|9 : T-TTCACT--GGAAAA-A---AATAAAATAATTAACA-CA-CGGTTGCCCCCT--CTCT---AA--T----TTTGT-AAAG-AT-TATATA-ACAGTCGttttttctttaacgattatttcaaaagaaaattaatcagg
blockSeqs : . GCTCACCCGGCGCCCCCTCC GGCGTAATAT AACA A . AG AT TTAATTT C GC AAT ATAA A C . T CCT C GAG TTTAA A . . .
blockSeqs : . TGGGCG CCCATA . . . TA AA AATC . A ACT . . . . . T . . T . . . .
blockSeqs : . TGGGCG CTCAA . . . G AT TACC . . AT . . . . . T . . T . . . .
blockSeqs : . CGGCCC CTTA . . . G A AATC . . AA . . . . . . . . T . . . .
blockSeqs : CTA . . . G G TC . . AT . . . . . . . . . . . .
blockSeqs : . . . . . AT . . . . . . . .
blockSeqs : . . AT . . . . . . .
blockSeqs : . A . . . . . .
blockSeqCons : ** CGGGCG************** CTCGTA****** G* AT AATC*** AT** T******
originalCons : GGCGGAT--TTAAGGGGCGGGG------CGGGCG--------CACCC---CTTA-A---AA----T-TT-ACCAA-GTGTAATATATATA-TAATCCTTATTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
finalCons : GGCGGAT--TTAAGGGGCGGGGCGGGCG--------------CACCCCTCGTA------AA----T-TT-ACCAAG-TGTAATATATATAAATC---TTATTT-TTCACT--GGAAAAAT--TAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AAT------TTTGT-AAAG-AT-TATATA-TCAGTTG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGACACATGGGGGCCTCAAGACCTCCCCCCGCTCATATGGATGTTGCCCCCCCCTAACTCGAATTTCTGGATCCGCCCT
Unaligned ( gi|10 ): CACTGGAGGCTCCAAAACCCCCTATATATGTTACCCCCACCCCACCCTCAACTCGAATTTCTGGATTCGCTCCT
Unaligned ( gi|13 ): ACCCCCTGCCCTCATATGAGTTGCGCCCCCTAACTCGAATGTTCTGGATCCCCCCTG
Unaligned ( gi|14 ): ACCATATTGATGTTGCGGCCCCACCCCTAACTCGGAATTTCGGATCCGCCCCTG
Unaligned ( gi|15 ): ATGTGATGCCCCCCCCCCCTAACTGGAATTCCTGGATCCGTCCCT
Unaligned ( gi|16 ): ATATGATGTTGCCCCCCTAACTCGAATTCTGGGATCCGACCT
Unaligned ( gi|18 ): CCCCCCTAACTAGAATTTCGGATCCGCCCCTGATTG
Alignments
lowQualScore : 11 222222 333333333333333333333333333 1 11 2222222222222222 11 111 111 2222222
lowQualScore : 11 0 0 3 333333 3 3 8 0 555555555555555555555555555 5 5 5 00 5 77 1 9999999999999999 4 11 7777 9999 4 4 4 4 666 5 000 2222222 6 6 6 0 8
lowQualScore : .. . . . ...... . . . . ........................... . . . .. . .. . ................ . .. .... .... . . . . ... . ... ....... . . . . .
lowQualScore : 00 8 8 2 000000 2 2 0 6 555555555555555555555555555 0 0 0 77 7 99 7 7777777777777777 4 99 3333 4444 4 4 4 4 777 0 000 5555555 7 7 7 8 0
consensus : GGCGGAT--TTAAGGGGCGGGG------CGGGCG-CACCC--------CTCNT--AA------A---TTT-ACC-AA-GTGTAATATATA-TA--AATCT------------T-A-TTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
Reference ( family-1665 ) : GGCGGAT--TTAAGGGGCGGGG------CGGGCG-CACCC--------CTCGT--AA------A---TTT-ACC-AA-GTGTAATATATA-TA--AATCT------------T-A-TTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-CGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTG
gi|1 : GCGGATATTTAAGGGTCTGTG------CAG-CA-CACCC--------TTCCTTAAA------A---TTTTACC-AATGTGTA-TA-ATA-TA--ATCCT------------T---TTT-TTCACT--GAAAAA----TAATAAA----TTA-CA-CACCGGC-GCCTC-------T---AAATT----TTTGT-AAAGAATGTATATATTCAGTT
gi|11 : gtGGAT--TTAAGGGGCGGGG------TGGGCG-CACCC--------GGCGT--AATATAATA---TTT-----AA-GTGTAATGTAT------AATCT------------T-A-TTT-TTCAttttttttcttatgcatgattttcaaaagttaatccatccaagaaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatagcgcccccaacaccctctgcctatatgatgttgcgccccaccctacactcgatatttctgattgaatccgcc
gi|12 : GGCGGAT--TTAAGGGGTGGGGGCTCACCCGGCG-CCCCCTCCCCCCCCCCAT--AA------A---TTT-ACC-AA-GTGTAA
gi|17 : -TTCACT--GGAAAAAA-TTAATAAA----TTA-CA-CA-TGGC-GCCCCC---C
gi|3 : CCC--------CTCAA--AA------AACATTT-ACT-AAAGTGTAA-ATATA-TA--AATCT------------T-A-TTT-TTCACTGCGAAAAA-A-TTAATAAA----TTG-C--CA-CA------CTT---CT-TGAGAA--TTTAATTTGCAAAAG-AT-TATA-A-TCAGT
gi|4 : ccccccTT-ACC-AATATGTTAAATATA-TT--A-CCT------------T-A-TTTCTTCACC--GGAAAA-A-ATAATAA-----TTA-CA-CA-CGGC-GCCCCCT--CT-T---AA-------TTTGT-AAAG-AT-TATATA-TCAGTTGgggtttattttccttaacgatgtatttcaaaaaaaattcctc
gi|5 : GGCGGAT--T-AAGGGGGGGGG------TGGGCG-CACCC--------CT--T--AA------A---TTT-ACC-AA-GTGTAATATATA-TATTAATTT------------TTA-TTT-TTCACT--GGAAAA-A-TTAATAAA----TTA-CA-CA-AGGC-GCCCCC---CT-T---AA--T----TTTGT-AAAG-AT-TATATA-TCAGTTGgtttttttttttcttaaacgatgtatttgaaattgaaattaat
gi|6 : GGCGGAT--TTA------GGGG------CTCACGGCCCCC--------CCCCT--AA------A---TTT-ACC-AA--TGTAG-ATATA-TA--AATCT------------T-A-TTT-TTCTCTA-GGGGAA-A-TTAATAAA----TTA-CA-CA-TGGC-GCCCTT---CT-T---
gi|7 : TT-ACCCAA-GT----TATATATTA--AATTTCTTTTTTTTTCAT-ATTTT-TTCACT--GGAAAA-ACTTAATAAA----TTA-CACCA-ATGC-GCCCCC---CT-ct
gi|8 : A-A-TTAATAAA----TTA-CA-CA-CGGT-GCCCCCCCTCT-C---AA--T----TTTGT-AAAG-GT-Tcttc
gi|9 : T-TTCACT--GGAAAA-A---AATAAAATAATTAACA-CA-CGGTTGCCCCCT--CTCT---AA--T----TTTGT-AAAG-AT-TATATA-ACAGTCGttttttctttaacgattatttcaaaagaaaattaatcagg
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGACACATGGGGGCCTCAAGACCTCCCCCCGCTCATATGGATGTTGCCCCCCCCTAACTCGAATTTCTGGATCCGCCCT
Unaligned ( gi|10 ): CACTGGAGGCTCCAAAACCCCCTATATATGTTACCCCCACCCCACCCTCAACTCGAATTTCTGGATTCGCTCCT
Unaligned ( gi|13 ): ACCCCCTGCCCTCATATGAGTTGCGCCCCCTAACTCGAATGTTCTGGATCCCCCCTG
Unaligned ( gi|14 ): ACCATATTGATGTTGCGGCCCCACCCCTAACTCGGAATTTCGGATCCGCCCCTG
Unaligned ( gi|15 ): ATGTGATGCCCCCCCCCCCTAACTGGAATTCCTGGATCCGTCCCT
Unaligned ( gi|16 ): ATATGATGTTGCCCCCCTAACTCGAATTCTGGGATCCGACCT
Unaligned ( gi|18 ): CCCCCCTAACTAGAATTTCGGATCCGCCCCTGATTG