lowQualScore : 11111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222
lowQualScore : 666666666 1 55 2 222 44444 111 1 2 44444444444444444444 1 11111111 55555555555555555555555555555555555555555555555555555555555 66666666666666666 1 11 11 3333333333333 1111111 111 11111111 1111 22222222222 8888888888888888888 111 1 4444444444444444444444444444444444444444444444444444444444444444444444 11 11 1111 11 666666666666666666 22222 33333333333 666666666666666666666666666666666666666666666 11111 22222222222222222222222 222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111 1 3333 777 22 2222222222222 1 777
lowQualScore : 666666666 5 55 444 0 999 55555 4 111 1 3 1 7 888 5 22222222222222222222 2 8888 4 22222222 3 55555555555555555555555555555555555555555555555555555555555 4 5 66666666666666666 6 5 66 4 55 8 4 77 9999 3333333333333 7777777 4 7777 1 9999 4 0 99 3 111 7 1 66666666 777 0000 2 77 00 33333333333 3 9999999999999999999 2 888 2 6 5555555555555555555555555555555555555555555555555555555555555555555555 0 0 11 3 11 7777 11 999999999999999999 00000 2 6 11111111111 2 222222222222222222222222222222222222222222222 4 00000 55555555555555555555555 4 333 7 6 0 2 555555555555 1 1 22 22 3 1 3 77777 3 6666 3 3 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 5 99999 77 5 8888 6 6 000 6 11 1111111111111 7 000
lowQualScore : ......... . .. ... . ... ..... . ... . . . . ... . .................... . .... . ........ . ........................................................... . . ................. . . .. . .. . . .. .... ............. ....... . .... . .... . . .. . ... . . ........ ... .... . .. .. ........... . ................... . ... . . ...................................................................... . . .. . .. .... .. .................. ..... . . ........... . ............................................. . ..... ....................... . ... . . . . ............ . . .. .. . . . ..... . .... . . ............................................................................................................... . . ..... .. . .... . . ... . .. ............. . ...
lowQualScore : 000000000 0 00 000 0 555 55555 0 777 0 0 2 4 888 0 66666666666666666666 2 5555 8 11111111 3 77777777777777777777777777777777777777777777777777777777777 1 0 00000000000000000 0 0 99 4 77 9 4 44 4444 6666666666666 9999999 4 9999 1 4444 4 2 22 2 777 8 4 99999999 888 6666 5 22 88 88888888888 7 8888888888888888888 5 555 8 0 2222222222222222222222222222222222222222222222222222222222222222222222 8 8 00 2 00 0000 00 000000000000000000 00000 8 7 77777777777 2 000000000000000000000000000000000000000000000 0 00000 33333333333333333333333 2 555 5 4 6 1 333333333333 5 8 99 66 3 2 3 77777 1 5555 3 3 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7 7 22222 77 0 0000 0 0 000 0 00 0000000000000 0 000
consensus : TCTTGTTTTCTTATTCTTGTTTGGGACTT--ACGNAGAATTGANANACTCNTGTTCCGTTGNTCTCGCCCTTTTA---TCCAACGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAT-TGTACT--------TGAATAT----TTGTTGACTTTCACA--------A-TAGATAG------A---------TA------GCTCCTCT-------------AAAA---C---T--GTGGCAAA-GCACAT--AATTAT-------AATCAAGA-CTA--CGA-TAAATTGAAGATCAGCCCGTGCGTTCGGC-ATTT-AG-TTAA----TCT-----CTG-----TAGC------GTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGAACATATT-TTGTTGAAATG-ATACTA-----------ACNAGTGTAT------AAG-GTA----GTAACACACTCTACNNNAGTCCGTTTCTACACGGT-----------GA-------------------------NC--------------ACAA------------AAGTGCAAATGC--AACTTTGT--AC----ACA--TATGGA--------------ATAAAGTA-----TAAAAT-ATA-----------AACTANATGC-CA-AC--GCT--NTTAA-ATA-----GCA---NTTT---T--CTTTT-TTAAGGCA-----GGG-GTC-A--TTT--TTTCTA---CGGGGGTCA--TTTTTCTNCATG-T--A--TA--TAACACGCA--GAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AAAA-TAA----TC-CAGT-TTTTCTTCA------GCT-----------T-------GGGGTC-----ATT-TT-TTCTTTCGA-C--GTA-----AGAA---AAAT--NACC-CC-----------AC-----CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGGNTGTCAATACATGTAACTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACT
Reference ( gi|1 ) : TCTTGTTTTGT-ATTCA-GTTTTGGACTTTAAAAGAGA-TTGATGCACTCT----CCGTTATTTTCGCCTTTTTA---TTCAATGTTCGGTGTCATCTAACG---AT-GTTTTTGCGTAC-TGTACT--------TGACTAT----TTGTTGACTTTTACA--------A-TAGATAG------T---------TA------GCT------------------AAAA---C---A--GTGGTAAA-GCACGT--AATCAT-------AATCAATA-CTA--CGA-TAAATTGAAGATCAACCTCTGTGTTCGGC-ATTT-AC-TTAA----TCT-----TTT-----TAGT------GTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGACTCTTCAAATGTTCA-----TGAAAAGAACATATT-TTGTTGAAATG-ATACTA-----------ACCAGTGTAT------GAG-GTACAT-GTAACACACTTTACTCTAGTGCGTTCCTACACGGT-----------GA-------------------------AT--------------ACGA------------AAGTGCAAATGC--AACTTTGT--AC----ACA--TA--GA--------------ATAAAGTA-----TAGAAT-ATA-----------AACTAAAT---TA-AT--GTT--ATTAA-ATA-----AAA---GTTT---T--CTTTT-TTAAGGCA-----GGA-GTC-T--TTT--TTTCTA---CGGGAGTCA--TTTTCCTCCATG-T--A--TA--TAACACGCA--GAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AAAA-TAA----TC-CAGT-TTTTCTTCA------GCT-----------T-------GGGGTA-----ATT-TTTTTCTTTCTA-C--GTA-----AGAA---AAAT--TACC-CC-----------AC----GCGGTCGTTATTCCAC-G---GTGGTCATTATTCTTCTTTACACCGACTGTCCATACTTTGAATTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAAAAACATTTTGTTGCA-A-----------TTTTCTATATCTATTGGACTATAATTAC
gi|7 : TCTTGTTTTCTTATTCTTGTTTGGGACTT--ACGGAGAATTGAAAAATTCTTGTTCTGTTGATCTTGTCCTTAAACGGTCCAATGATCGGTGT-ATCTAGAGTTAATCGTTTATGAGTATGTATACTCCTTATCATGAATAT----TTGTTGACCTTTGCACGAATATTA-TAAATAA------TGCTCCTCTGCA------CCT------------------AGAAACCC---ATGATGGCAAAAGCAA----AAACAT-------AATCAAAAACTA--CGAATAAACTGAAGATCAAACCCGTTGCTTCGC-ATT--ATGTTAA----ACT-----TCTA----TAGAAAAGGAGTA-CT---AATTCAAAGT----ACTTGGGAGTTAACTAAAAAAAGTCAAGCTCTTCAAACGTCTAAAAATTGAATTAAACTTATT-TTGTTGAAATA-ATACTA-----------
gi|10 : AATAGA-TTGAT-CACTCG----TCGTTATTTTCGCCTATTCA---TT-AATGTTCGGTGTGATCTAGCG---AC-GTTTT--AGTAC-TGTACT--------TGACTATATATTTGTTGCCTTTCACA--------A-CAGATAGATACAATG--------TA------GAT------------------AAAA---C---T--GTGGCAAA-GCACAT--AATTAT-------AATCAAGA-CTA--CGA-TAAATGGAAGATTAACCCCTTTGTTCAGC-ATTT-GG-TTAA----TCT-----CTG-----TAGC------GTA-AT---AAATCAAAGC----A-TTGGGAGTT--CTAAAAA---CCATTCTCTTTAAATGTACA-----TGAAAAGAACATATT----TTGAAAAG------A-----------ACCAGT
gi|9 : TTATA---TTCAATGATCGCCGTGACCTAGCG---AT-GTTTTTGT-------TAAC--------TGAATAT----TTGTTGACTTTCACA--------A-TAGATAG------T---------TAAATAATGCTCCTCTTATATCCACTGAGAAAA---C---T--GTGGCAAA-GAACATTTAAT-----------ATTAAGA-CTA--CGA-TAAATTGAAGATCAACCCATGTATTCGGT-ATTT-AG-TTAA----TCT-----CTG-----TAGT------GTA-TTTTACAATCAAAGTAATGA-TCGAGAGTT--ATAATAA---Ca
gi|4 : aggaacttggatcaaaataacaatttttttttactttaaaaaaacgaaaagtaatatatatatgtaaccgattaaaaggaTTTA---CCCAATTATCCGTGTGATATAGCG---AT-ATATTTGAGTAT-TGTACT--------TGAATGT----CTGTTGACTCTCGTA--------A-TAGA------------------------------------------------AAAA---C---T--GCGGTAAA-GCACG--------T-------AACCAAGA-CTG--CAA-TAAATTGAAAATTAGCCAATGCGTTCGGC-ATTT-AT-TTAA----CCTCAGACTCTGTACATAGT------GTATTT---CA--CAAA----------------T--C-AAAAC---CCAGGCTCTTT-AATGTACA-----TGAAATGAATATGTT-TAATT-ACATT-ATACTA-----------ACAAATGCAT------aattataactttttttaaaa
gi|2 : tgctaatacctaattttaacatgaaataatctgaatacacaagaagcgttctgcgaaatttagtatataaataaacatgcctggttggtactgatggaatcggtgcattggatcacacggacggcgagaaaccaaggtccttggatcaagtcccaaaaagaggacaatttttacttttaaacaacaaaaagtaaaatataagagagtaaaagaattaccgaaTTA---TCCAACGGTCGGTGTGACCTAGCG---AC-GTTTTTGT-------TAAT--------TGAATAT----TTGTTGACTTTCACA--------AATGGATAG------A---------TAAT----GCTCCTCTGTACCCATTGAG-AAAA---C-------TGGCAAA-GCACATTTAAT-----------ATCAAGA-CTATACGA-TAAACTGAAGATCAATCCATGTGTTCTGC-ATTT-AA-TTAACTAATTT-----CTG-----TAGC------ATA-TT---TAATCAAAGT----A-TTGAGAGTT--CTAATAA---CTAGGATCTTTAAATGTACA-----TGAAAATAACGTATTACTATC-AAGTGTATTTTG-----------ACTAGTGTAC------AAG--------GTAACACGCTTTACTTTAGCTCATTTCTACACGGTAATCACAACTGGA-------------------------ATGTATTAACCGTTACATAA------------AAGTGCAAATGC--AACTTTGT--AC----ACA--TATGGA--------------ATAAAGTA-----TAAAAT-ATA-----------AACTAAATGC-TATAT--G-T--ATTttgaactat
gi|6 : agaTTA---TCCAGCGATCG-TGG-ACCTAGCG---AT-GATTTTGT-------TAAT--------TGAATAT----TTGTTGATTCTCACA--------A-tcattacctatattttaaaaatataggtaatgaaatacatatattatttttacatatattattgatcaacacttttgaatagcattttacttttttaagacaagggtcatttttctatgagggtcatttttcttcatgtataacacgcagaactgaccactggatcttttttctttaaaaaaaaaaatccaatttttcttcagctgnnnnnnnnnnnnnnnnnnnnnnnnnatttttaccggaagtaaaattacccctggtcattctacgggggtcattattcttct
gi|14 : ttaaaataattttgtctacaagtatttcttgattaatctagatgtcattaaatctaagtccgttgaaaatgtcttgcaccagggacactatttctacgaaaatattttatcaaaattaattaaataaacttttgtaacaatttcgaacacaattattgctaataagtacttttgatatgaaataataaagattattacacaaggggtgctctacctaatttagtgtatgaataaacatggttggtactgatgaaatcgtaagcatggtacattggaccaaacggacgacgacagagccaaggaatttggataaaatcctccagaaaataacaatgtttacttttaaaacacgaaaagtaatatatgtaaccaattaaaaggataCAATGATCGGTGTGATCTAGAT---AT-GTTTATGAGTAT-TATACTCGATCA--TGAATAT----TTGTTGACTTTCACA--------A-TAGATAG------A---------TAAT----GCTCCTCTGCACCGAG-----AAAA---CCATG--ATGGCAAA-GCAC--------AT-------AATCAAAA-CTA--CGA-TAAACTGAAGATCAACCCGTGCGTTCGGC-ATTT-AG-TTAA----TCT-----CTA-----TAGA------GTA-NT---CTATTAA--T----A-TT
gi|23 : cCGGTGTGGTCTATTG---AT-GTTTTTGAGTAC-CGTATT--------TGAATAT----TTGTTGACTTTCACA--------A-TAGATAG------a
gi|29 : GTACTG-------TGAATAT----TTGTTGACTTTCACA--------A-TAGATattttaaatgtac
gi|26 : aTAT----TTGTTGACTTTCACA--------A-TAGATAG------A---------TA------tgatanatg
gi|19 : aaTGTTGAATTTCACA--------A-TAGATAG------A---------TA------GAG------------------AAAA---A---T--GTGGCAAA-GCACAT--AATTATTCTAGT-AATCAAAA-CTA--CGA-TAAATTGAAGATCAGCTCGTGTGTTCGGCGATTT-AG-TTAA----TCT-----CTG-----TGGC------GTA-TT---CAATCAAAGT----A-TTAAatgttcctctgtacccactgagaaaactgtggcaaaacacat
gi|18 : TGTTGAATTTCACA--------A-TAGATAG------A---------TA------GAG------------------AAAA---A---T--GTGGCAAA-GCACAT--AATTATTCTAGTAAATCAAAA-CTA--CGA-T-AATTGAAGATCAGCTCGTGTGTTCGGCGATTTAAG-TTAA----TCT-----CTG-----TGGC------GTA-TT---CAATCAAAGT----A-TTAAa
gi|3 : GA-TAAGTCGAAGACCAGCCCTTGCGTCTGGC-GCTT-AG-TTAA----TAT-----CTG-----CAGC------AT--TG---AAATCAAATT----A-TTTAGAGTT--CGAAAAA---CCAGGCTCTTTAAATGT------------------ATA-------TGAAATG-ATACTA-----------ACAAGCGAATTTTAACTAGTGTATATGGTAACACACTTTACAAAAGTCCGTTTCTACACAAT-----------GA-------------------------TC--------------AC--------------AGATGC--AT-T--AGCTTTATCAACTGTTACA--TA--AACGTGCAATTGCAACATTAAGTG-----TAAAAT-ATA-----------AACTAAATGC-TA-TTTCGTT--ACCAATAT------------CTTTACAT--CTCGTATCAA--CACTTTTGAATATCAT--TTTACTTTTTAAGGCAGGAGTTA--TT-------ATG-TACA--TG--TAACATGCA--GAAAACGTG-CCCCTAA-GTCTCCT-TTCTTA-----AAAATTAA----TT-CAGT-TCTTCTTCAGGAGGGGGT-----------G-------GGGGTGGGGGCATT-------TTTCGA-TG-GT-------GGG---GAAT--GACC-CC------------------CGGTCATTATTCTAT-G---GGAGTCATCATTTTTTTTTa
gi|8 : tgaaaacaagGGCTCTTTAAATGTACA-----TGAAAAGAACATATT-TTCTTGAAATC-ATTTGG-----------ACCAGTTTAT------GAG-G-A------AACACACTCTACTTAAGTCCGTTTCTACACGGT-----------GA-------------------------TC--------------ACAATTGCATTGCATTAAGTGCAAATGC--AACTTCGT--AC----ACATGTG--GA--------------ATAAAGTA-----TAAAAT-ATA-----------AACTAAATGC-TATAT--G-T--ATTtta
gi|27 : TCTTCAAACGTTCA-----TGAATTAAACTTATT-TTGTTGAAATA-ATACTA-----------tcattacctatatctatacatatcatatcaacacttttaaataacattttacctttttaaggcaggggccatttttccacgggggttatttttctgacgcagaaaacgacccctggttcgttttctttcaaataatccaattgttc
gi|5 : TGTACA-----TGGAATGAACATATT-TTGTTGAAATA-ATAACATGCGTATTTGGACTAGTGTAT------AAA-GTA------AA-ACACTCCACAGTAGTATGTTTCTACACGGT-----------GATCACAGTTGCATTGTATTAACTGTGAC--------------ATAA------------AAGTGCAA--GCTAAACTTT-T--AA----ACA--TATGGC--------------ATGAAGTT-----GAAAAT-ATA-----------AACTAGAT---
gi|12 : TACAAATGC--AACTTTGT--AC----ACA--TATAGA--------------ATAAAATACAAACTAGAATGATATCTATTTCATTATCTATATCTTTACAT--ATTGTATCAA-ACACTTTTAAATACATTA---T--CCTTT-TTAAAGCA-----GG--GTC-GAGTGT--ATTCTA---CGGGAGTCA--TTTTTCTTCACG-T--A--TA----ACACGCA--GAAAAC-CGACCCTTGG-GTC-TCT-TTCTTA-----AAAA-AAA----gctattttgttacctatatctatatctcgtatcaacacttttaaatatcaatttattacctttgtaaggcaggggccatttttctacgggggtcatttttccatgtataacatgcagaaactgactcctgggtatttatttttcaaaataatccattttttctgaagctggggtgttatttttcgatgtcgaaaaatgaccgccagatgaagaaaacactgtcattattctacggggggtcattactcttctttacacggagtgtttgattttttttaaaaac
gi|8 : AT-ACA-----------TATCATAT---CA-AC--ACT--TTTAA-ATA-----ACA---TTTT---A--CCTTT-TTAAGGCA-----GGG-G-C-C--ATT--TTTCCA---CGGGGGTTA--TTTTTC----TG---------------ACGCA--GAAAAC--GACCCCTGG-TTCGTTT-TCTTTC------AAA-TAA----TC-CAAT-TGTTCaaata
gi|2 : ggctctttaaatgtacatgaaaagaacatattttcttgaaatcatttggaccagtttatgaggaaacacactctacttaagtccgtttctacacggtgatcacaattgcattgcattaagtgcaaatgcaacttcgtacacatgtggaataaagtataaaatataaactaaatgctatatgtatttcattacctatatctAT---CA-AC--ACT--TTTGA-ATA-----GCA---TTTT---A--CTTTT-TTAAGACA-----AGG-GTC-A--TTT--TT-CTA---TGAGGGTCA--TTTTTCTTCATG-T--A--TA----ACACGCA--GAA--C-TGACCACTGG-ATCTTTT-TTCTTT-----AAAA-AAAAAAATC-CAAT-TTTTCTTCA------GCTGNNNNNNNNNNN-------NNNNNN-----NNN-NNNNNATTTTTACC--GGA-----AGTA---AAAT--TACC-CC------------------TGGTC---ATTCTAC-G---GGGGTCATTATTCTTCT
gi|5 : agattatccaacggtcggtgtgacctagcgacgtttttgttaattgaatatttgttgactttcacaaatggatagataatgctcctctgtacccattgagaaaactggcaaagcacatttaatatcaagactatacgataaactgaagatcaatccatgtgttctgcatttaattaactaatttctgtagcatatttaatcaaagtattgagagttctaataactaggatctttaaatgtacatgaaaataacgtattactatcaagtgtattttgactagtgtacaaggtaacacgctttactttagctcatttctacacggtaatcacaactggaatgtattaaccgttacataaaagtgcaaatgcaactttgtacacatatggaataaagtataaaatataaactaaatgctatatgtatttcattacctatattttaaaaatataggtaatgaaatacatatattatttttacatatattattgAT---CA-AC--ACT--TTTAA-ATA-----TCA---ATTTAT-TA-CCTTT-GTAAGGCA-----GGG-GCC-A--TTT--TT-CTA---CGGGGGTCA--TTTT--TCCATG-T--A--TA----ACATGCA--GAAA-C-TGACTCCTGG-GTATTTA-TTTTTC-----AAAA-TAA----TC-CATT-TTTTCTGAA------GC------------T-------GGGGTG----------TTATTTTTCGA-T--GT------CGAA---AAAT--GACCGCCAGATGAAGAAAAC----ACTGTCATTATTCTACGG---GGGGTCATTACTCTTCTTTACACGGAGTGT
gi|13 : tgtacatggaatgaacatattttgttgaaataataacatgcgtatttggactagtgtataaagtaaaacactccacagtagtatgtttctacacggtgatcacagttgcattgtattaactgtgacataaaagtgcaagctaaacttttaaacatatggcatgaagttgaaaatataaactagatgctattttgttacctatatctatatctcgtTTAA-ATA-----GCA----TTT---TAGTTTTT-TTAAGGCA-----G---------------------------GGGTCA--TTTTTCTTCATG-T--A--TA----ACACGCA--GAAAAC-TTAGCCTTGG--TCTTTT-TTC--------AAAA-TAA----TC-CAGT-TTTTCCTttgattttttttaaaaac
gi|11 : ttaaatgttcaagcatgattcatgtgtattataccttaaagagcaaacatattttttaatccatatgtatatttttacacatcttatcgatcaacaattA-ATA-----GCA---TTTC---A--CCTTT-TTAAGGCA-----GGG-GTC-A--TTT--TT
gi|20 : TTT---TA-CTCTT-TTAATGCA-----GGG-GTC-A--TTT--TT-CTT---CGCGGGTAA--ATATTCTTCATG-T--A--CA----ACACACA--GAAAAC-TGACCCCTTG-GCCTTTT-TTCTTC-----AAAA-TAA----TT-AAAT-TTTTCTTCA------GCT-----------TG------GGGGTC-----ATT-TTcttctatataacagcagaaaactgaccctggtttttttcttcaaataaaccagtttttttttttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|12 : tatcaTTT---T--TTTTT-TTAAGA-A-----AGA-GAC------------CCA---AGG--GTCG--GTTTTCTGCGTG-T-----TA--T-ACGTGAA--GAAAAA-TGACTCCCG
gi|16 : tacaaatgcaactttgtacacatatagaataaaatacaaactagaatgatatctatttcattatctatatctttacatattgtatcaaacacttttaaatacattatcctttttaaagcagggtcgagtgtattcta--CTTTT-T--AGGCA-----GGG-GTC-A--TTT--TTC--A---CGGGGGTCT--TTTTTCTTCATG-T--A---A--CAACGCGCA--GAAAAC-TGA-ACCTGGCGTCTTTT-TTCTTC-----ACAA-TAA----TC-C-GA-TTTTCTTCAC-----GCT-----------A-------GGGGTC-----ATTATTCTTCTTTta
gi|15 : ttata--TTT--TTTCTA---CGGG-GTCA--GTTTCTTC-ATG-T--A--TA--TA-CATGCA--GAAAAC-TGACCCCTGG-GTC-TTT-TTCTTCAAATAAAAA-TAA----TC-CAAT-TTTTCTTCA------GCTGGGGA------TGGGGGGGGGGGTC-----ATT-------TATCGA-C--GTACATGTAGAA---AAAT--GACC-CC----------------------TATTATCCAAC-G---GGGGTCATTATTCTTCTTTAgcaccggatgtcaatacatgtaacttcaataccttccacttg
gi|11 : a--TTTTTAAGGCAGGGGTCA--TTTTTCTTC----T--A--TA--TAACA-GCA--GAAAAC-TGACCCT--G-GT-TTTT-TTCTTC-----AAA--TAA----AC-CAGT-TTTTTTT
gi|5 : aatagcatttcacc---CAGGAGTCA--GTTTC-TGCATG-T-----TA--TA-CATG----GAAAAA-TGACCCCCGtttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|15 : tgtacatggaatgaacatattttgttgaaataataacatgcgtatttggactagtgtataaagtaaaacactccacagtagtatgtttctacacggtgatcacagttgcattgtattaactgtgacataaaagtgcaagctaaacttttaaacatatggcatgaagttgaaaatataaactagatgctattttgttacctatatctatatctcgtatcaacacttttaaatatcaatttattacctttgtaaggcaggggccatttttcta---CAGGGGTCA--GTTTTCTGCATG-T--A--TA--T-ACATGAA--G-AAAC-TGACCCCggtatttatttttcaaaataatccattttttctgaagctggggtgttatttttcgatgtcgaaaaatgaccgccagatgaagaaaacactgtcattattctacggggggtcattactcttctttacacggagtgtttgattttttttaaaaac
gi|17 : attttttctac---CAGGGGTCA--TTTT-CTCCATT-T--G--CAACTATTACGGAAGAAAAAG-TGATCCCTGggtctttttcttcaaataaaaataatccaatttttcttcagctggggatgggggggggggtcatttatcgacgtacatgtagaaaaatgacccctattatccaacgggggtcattattcttcttta
gi|17 : GGGA-TCACTTTTTCTTCCGTAAT--AGTTG--CAA-ATGGA--GAAAA--TGACCCCTGG-GTCTTTTTTTCTTC-----AAAA-CAA----TC-CAGT-CATTATTCT------ACT-----------T-------GCGGTC-----A---TTATTCTTTACA-CCGGCA-----A-AACGTAAAT--TGTG-CC-----------ACTACTGGGATC--TATACCAC-G---ggtctttttttcttcaaaacaatccagtcattattctacttgcggtcattattctttacaccggcaaaacgtaaattgtgccactactgggatctataccacg
gi|22 : caGGGGTCA--TTTTTCTTCATG-T--A--TA----ACACACA--GAAAAC-TGATCCATGG-GTCTTTT-TTCTTC-----AAAA-TTA----TC-CAGT-TTTTCTT
gi|22 : aGGA-TCA--GTTTTCTGTGTG-T-----TA--TA-CATGAA--GAAAAA-TGACCCCT
gi|11 : GGGTCA--GTTTTCTGC-TG-TT-A--TA--TA----GAA--GAAAAA-TGACCCCTGatgggtcttttttcttcaaaattatccagtttttctt
gi|13 : aatagcatttcacctttttaaggTTTTCTGCGTG-T-----TA--TA-CATGAA--GAAAAA-TGACCCCTGtggtttttttcttcaaataaaccagtttttttttttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|5 : ttaaatgttcaagcatgattcatgtgtattataccttaaagagcaaacatattttttaatccatatgtatatttttacacatcttatcgatcaacaattttaaatagcattttagtttttttaagg-----AGAA-TAA----TGACAGTGTTTTCTTCA------TCT-----------G-------GCGGTC-----ATT-------TTTCGA-C--AT------CGAA---AAATAACACC-CC-----------Acttagccttggtcttttttcaaaataatccagtttttcct
gi|17 : tgtacatggaatgaacatattttgttgaaataataacatgcgtatttggactagtgtataaagtaaaacactccacagtagtatgtttctacacggtgatcacagttgcattgtattaactgtgacataaaagtgcaagctaaacttttaaacatatggcatgaagttgaaaatataaactagatgctattttgttacctatatctatatctcgtatcaacacttttaaatatcaatttattacctttgtaaggcaggggccatttttctacgggggtcatttttccatgtataacatgcagaaactgactcctgggtatttatttttcaaaataatccattttttctgaagcTT-TTTTTCTTC---------------AAAA---CAAT-------CC-----------A--------GTCATTATTCTAC-TT--GCGGTCATTATTCT---TTACACCGGCacggggggtcattactcttctttacacggagtgtttgattttttttaaaaac
gi|8 : cagggatcactttttcttccgtaatagttgcaaatggagaaaatgacccctgggtcTTTCTG-C--GTC-----AGAA---AAAT--AACC-CC------------C----GTGGaaaacgtaaattgtgccactactgggatctataccacg
gi|16 : ggctctttaaatgtacatgaaaagaacatattttcttgaaatcatttggaccagtttatgaggaaacacactctacttaagtccgtttctacacggtgatcacaattgcattgcattaagtgcaaatgcaacttcgtacacatgtggaataaagtataaaatataaactaaatgctatatgtatttcattacctatatctatacatatcatatcaacacttttaaataacattttacctttttaaggcaggggccatttttTTCAC-GCTAGGGGTCATTATTCTTCTTTGCACCGGATGTCAATACATGTAACTTCAacgacccctggttcgttttctttcaaataatccaattgttc
gi|28 : ttatactttttaggcaggggtcatttttcacgggggtcttttttcttcatgtaacaacgcgcagaaaactgaacctggcgtcttttttcttcacaataatccgattttcGGGCATTATTCTTCTTTACACCGataccttccacttg
gi|25 : cgccaggAAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACTgaatattatacaagt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): TCGTAAGCATTGTACATTGGATCACACGGATGGCGACAGAGACAAGGAATTTGGAACAAATCCTCCAGAATATTACTGTAACAATTTTTTTTTACTTCAAAAAACTGAATAGTAATATAT
Unaligned ( gi|24 ): ACTACACAAGGGGTGCCTTGCCTAATTTAGTATGCGAATAAACATGGTTGTTACTGATGAAATCGTAAGCATGGTAC
Unaligned ( gi|30 ): TTATTTATTCAAAAGTAGTAATGGCCAATATGAG
Alignments
lowQualScore : 1111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 111 3333 111 111111 33333333 4444444444444444444444444444444 111 33333333333 11111111111 111111 111 11111 11 22222222222 33333333 2222222222222222222222222222222222222222222222222222222222222222 1111 333333333333333333333 6666666666666666666666666666666666666666666666666666666666666666666666 333333333333333333 1111111 2222222 11111 111111 5555555555555555555555555555555555555555555555555555555555555 7777777777777777 111 11 1 888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333 4444444444444 333
lowQualScore : 2 5 99 2 66 1 3 444 5555 11 0 0 000 2 777 4 222222 4 00000000 7777 44 3 3 3 7777 5555555555555555555555555555555 222 8 1 33333333333 4 0 55 4 4 66 8 4 55555555555 4 8888 111111 4 777 8888 4 77 1 000 11111 1 4 3 4 5 22 0 33333333333 1 99999999 333 3 5555555555555555555555555555555555555555555555555555555555555555 0 99 1 99 4444 666666666666666666666 99 1111111111111111111111111111111111111111111111111111111111111111111111 5 1 66 7 6 777777777777777777 55 666 3333333 3 0 1 3 0 44 1 2222222 3 2 2 33333 33 2 0 888888 777777 2222222222222222222222222222222222222222222222222222222222222 1 1 6 0000000000000000 9 6 5 000 11 5 444444444444444444444444444444444444444444444444444444444444444444444444444444444444 555 2 9999999999999 4 555
lowQualScore : . . .. . .. . . ... .... .. . . ... . ... . ...... . ........ .... .. . . . .... ............................... ... . . ........... . . .. . . .. . . ........... . .... ...... . ... .... . .. . ... ..... . . . . . .. . ........... . ........ ... . ................................................................ . .. . .. .... ..................... .. ...................................................................... . . .. . . .................. .. ... ....... . . . . . .. . ....... . . . ..... .. . . ...... ...... ............................................................. . . . ................ . . . ... .. . .................................................................................... ... . ............. . ...
lowQualScore : 5 5 55 5 55 0 3 333 0000 77 7 7 000 0 888 4 111111 8 00000000 7777 22 1 1 3 1111 8888888888888888888888888888888 555 0 9 00000000000 0 5 55 0 0 33 0 0 11111111111 0 5555 555555 0 000 5555 0 99 4 000 11111 0 4 9 4 6 22 8 88888888888 0 00000000 000 2 8888888888888888888888888888888888888888888888888888888888888888 8 22 0 22 2222 000000000000000000000 22 2222222222222222222222222222222222222222222222222222222222222222222222 0 0 99 4 9 666666666666666666 00 444 2222222 1 5 5 2 4 22 5 6666666 1 9 9 22222 99 9 7 888888 222222 9999999999999999999999999999999999999999999999999999999999999 8 0 7 5555555555555555 8 0 7 000 00 3 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 5 0000000000000 0 000
consensus : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC-T--TCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATAATGCTCCTC--------TG-ACC-A------AAAAC---TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-ATACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTAC--------------------------ACGGTGATCACAA-TG-A-TG-ATT-------------AAGTGCAAATGC--AACTTTGT--AC----ACATA----------TGGA-------ATA--AAGT-------A-----TAAA------AT-A-----TATTT--TT----ANCTANATCT-TAC-T--C--G---CCAACACTTTTA--AATANCATTTT---N-CT-----------TTTTTAAGGCAGGGGTCA--TTT---TTTCTA---CGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACC-CC------------C-CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGTC-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
Reference ( family-1655 ) : TCTTGTTTTCTTATTCTTGTTTGGGACTTACGNAGA-ATTGANANACTCNTGTTCCGTTGNTCTCGCCCTTTTA---TCCAACGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAT-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--GCTCCTC--------T-------------AAAAC---TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AGCCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-ATACTA-----------ACNAGTGTATAAGGTA---GTAACACACTCTACNNNAGTCCGTTTCTAC--------------------------ACGGTGANCACAA-------------------------AAGTGCAAATGC--AACTTTGT--AC----ACATA----------TGGA-------ATA--AAGT-------A-----TAAA------AT-A-----TA-----------AACTANAT-------------G---CCAACGCTNTTA--AATAGCANTTT---T-CT-----------TTTTTAAGGCAGGGGTCA--TTT---TTTCTA---CGGGGGTCA-TTTTTCTNCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATNACC-CC-----------AC-CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-NTGTCAATACATGTAACTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACT
gi|1 : TCTTGTTTTGT-ATTCA-GTTTTGGACTTTAAAAGAGATTGATGCACTC----TCCGTTATTTTCGCCTTTTTA---TTCAATGTTCGGTGTCATCTAACG---AT-GTTTTTGCGTAC-TGTACT--------TGA----CTATTTGTTGACTTT--TAC-AA-TA-GATAG----TTA--GCT--------------------------AAAAC---AG-TGGTAAAGCACGTAATCAT-------AATC-AATACTA--CG-ATAAATTGAAGATC-AACCTC-TGTGTTCGGC-ATTTA-CTTAA----T------C-TTTT----TA------GTGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGACTCTTCAAATGTTCA-----TGAAAAGA-ACATATT-TTGTTGAAATG-ATACTA-----------ACCAGTGTATGAGGTACATGTAACACACTTTACTCTAGTGCGTTCCTAC--------------------------ACGGTGAATACGA-------------------------AAGTGCAAATGC--AACTTTGT--AC----ACATA------------GA-------ATA--AAGT-------A-----TAGA------AT-A-----TA-----------AACTAAAT------------------TAATGTTATTA--AATAAAAGTTT---T-CT-----------TTTTTAAGGCAGGAGTCT--TTT---TTTCTA---CGGGAGTCA-TTTTCCTCCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTAATT--TTTTTC-------------TTTCTAC-GTA-----AGAAAAATTACC-CC-----------ACGCGGTCGTTATTCCAC-G---GTGGTCATTATTCTTCTTTACACCGA-CTGTCCATACTTTGAATTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAAAAACATTTTGTTGCA-A-----------TTTTCTATATCTATTGGACT
gi|10 : -ATTGAT-CACTCGT----CGTTATTTTCGCCTATTCA---TT-AATGTTCGGTGTGATCTAGCG---AC-GTTTT--AGTAC-TGTACT--------TGACTATATATTTGTTGCCTTT--CAC-AA-CA-GATAG----ATA--------CAATGTAGAT-------------AAAAC---TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATGGAAGATT-AACCCC-TTTGTTCAGC-ATTTG-GTTAA----T------C-TCTG----TA------GCGTA-AT---AAATCAAAGC----A-TTGGGAGTT--CTAAAAA---CCATTCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTGataattac
gi|11 : aatag--AATAGCATTTC---A-CC-----------TTTTTAAGGCAGGGGTCA--TTT---TT----------------------CTTC---T--ATATA-----ACA-GCAGAAAAC-TGACCCT--G-GT-TTTT-TTCTTC-----AA--A--TAAACCAGTTTTTT------TTaaaagaaccagta
gi|12 : TACAAATGC--AACTTTGT--AC----ACATA----------TAGA-------ATA--AAAT-------ACAAACTAGA------ATGA-----TATCTATTTCATTATCTATATCTTTACATATT--GTATCAAACACTTTTA--AATA-CA-TTA---T-CC-----------TTTTTAAAGCAGGG-TCGAGTGT---ATTCTA---CGGGAGTCA-TTTTTCTTCACGT--ATA-------ACACGCAGAAAAC-CGACCCTTGG-GTC-TCT-TTCTTA-----AA--AA-AAAtttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|13 : CAACAATTTTA--AATAGCATTTTAG-T--T-----------TTTTTAAGGCAGGGGTCA--TTT---TT----------------------CTTCATGT--ATA-------ACACGCAGAAAAC-TTAGCCTTGG--TCTTTT-TTC--------AA--AA-TAATCCAGTTTTTC------CTaaata
gi|14 : ttaaatgttcaagcatgattcatgtgtattataccttaaagagcaaacatattttttaatccatatgtatatttttacacatcttatcgatCCAATGATCGGTGTGATCTAGAT---AT-GTTTATGAGTAT-TATACTCGATCA--TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATAATGCTCCTC--------TGCACCGAG-----AAAACCA-TGATGGCAAAGCACATAAT-------------C-AAAACTA--CG-ATAAACTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTA----TA------GAGTA-NT---CTATTAA--T----A-TT
gi|15 : A--TTT---TTTCTA---CGGGG-TCA-GTTT-CTTCATGT--ATATA------CATGCAGAAAAC-TGACCCCTGG-GTC-TTT-TTCTTCAAATAAA--AA-TAATCCAATTTTTC------TTCA------GCTGGGGATGGGGGGGGGG-GTCA-T--T------------------TATCGAC-GTACATGTAGAAAAATGACC-CC------------------TATTATCCAAC-G---GGGGTCATTATTCTTCTTTAa
gi|16 : -CT-----------TTTT--AGGCAGGGGTCA--TTT---TTC--A---CGGGGGTCT-TTTTTCTTCATGT--A-ACA-----ACGCGCAGAAAAC-TGA-ACCTGGCGTCTTTT-TTCTTC-----AC--AA-TAATCC-GATTTTC------TTCAC-----GCT-----A-------GGG-GTCA-TTATTCTTC-------------TTT
gi|16 : ttataGG-GTCTTTT-TTCTTC-----ATGTAA-CAACGCG------CAGAAAACTGA------ACC-----T-------GGC-GTC--T--TTTTTC-------------TTC--AC--------------AATAATC-C----------------GATT-TTCTTC-AC-GCTAGGGGTCATTATTCTTCTTTGCACCGG-ATGTCAATACATGTAACTTCAgcaccggatgtcaatacatgtaacttcaataccttccacttg
gi|17 : ttatactttttaggcaggggtcatttttcacgg---CAGGGATCACTTTTTCTTC-CGT--A-ATAGTTGCAAATGGAGAAAA--TGACCCCTGG-GTCTTTTTTTCTTC-----AA--AA-CAATCCAGTCATTA------TTCT------ACT-----T-------GCG-GTCA----TTATTC-------------TTTataccttccacttg
gi|18 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA--GAG--------------------------AAAAA---TG-TGGCAAAGCACATAATTATTCTAGTAAATC-AAAACTA--CG-ATAA-TTGAAGATC-AGCTCG-TGTGTTCGGCGATTTAAGTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAacaccggcaaaacgtaaattgtgccactactgggatctataccacg
gi|19 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA--GAG--------------------------AAAAA---TG-TGGCAAAGCACATAATTATTCTAGT-AATC-AAAACTA--CG-ATAAATTGAAGATC-AGCTCG-TGTGTTCGGCGATTTA-GTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAa
gi|2 : TTA---TCCAACGGTCGGTGTGACCTAGCG---AC-GTTTTTG------T-TAAT--------TGA----ATATTTGTTGACTTT--CAC-AAATG-GATAG----ATAATGCTCCTC--------TGTACCCATTGAG-AAAAC---TG---GCAAAGCACAT--TTAA-------TATC-AAGACTATACG-ATAAACTGAAGATC-AATCCA-TGTGTTCTGC-ATTTA-ATTAACTAAT------T-TCTG----TA------GCATA-TT---TAATCAAAGT----A-TTGAGAGTT--CTAATAA---CTAGGATCTTTAAATGTACA-----TGAAAATA-ACGTATTACTATC-AAGTGTATTTTG-----------ACTAGTGTACAAG------GTAACACGCTTTACTTTAGCTCATTTCTAC--------------------------ACGGTAATCACAACTGGAATGTATTAACCGTTACATAAAAGTGCAAATGC--AACTTTGT--AC----ACATA----------TGGA-------ATA--AAGT-------A-----TAAA------AT-A-----TA-----------AACTAAAT-------------G---CTAa
gi|2 : agaCAACACTTTTG--AATAGCATTTT---A-CT-----------TTTTTAAGACAAGGGTCA--T-T---TTTCTA---TGAGGGTCA-TTTTTCTTCATG----TATA-----ACACGCAG--AAC-TGACCACTGG-ATCTTTT-TTCTTTAAAA-AA--AA-AAATCCAATTTTTC------TTCA------GCT-----G-------NNN-NNNN-N--NNNNNNNNNNNNNNNNNATTTTTACC-GGA-----AGTAAAATTACC-C-------------C-TGGTC---ATTCTAC-G---GGGGTCATTATTCTTCTtatgtatttcattacctatattttaaaaatataggtaatgaaatacatatattatttttacatatattattgatcaacacttttgaatagcattttacttttttaagacaagggtcatttttctatgagggtcatttttcttcatgtataacacgcagaactgaccactggatcttttttctttaaaaaaaaaaatccaatttttcttcagctgnnnnnnnnnnnnnnnnnnnnnnnnnatttttaccggaagtaaaattacccctggtcattctacgggggtcattattcttct
gi|20 : agattatccaacggtcggtgtgacctagcgacgtttttgttaattgaatatttgttgactttcacaaatggatagataatgctcctctgtacccattgagaaaactggcaaagcacatttaatatcaagactatacgataaactgaagatcaatccatgtgttctgcatttaattaactaatttctgtagcatatttaatcaaagtattgagagttctaataactaggatctttaaatgtacatgaaaataacgtattactatcaagtgtattttgactagtgtacaaggtaacacgctttactttagctcatttctacacggtaatcacaactggaatgtattaaccgttacataaaagtgcaaatgcaactttgtacacatatggaataaagtataaaatataaactaaatgctatatgtatttcattacctatattttaaaaatataggtaatgaaatacatatattatttttacatatattattgatTATCATTTT---A-CT-----------CTTTTAATGCAGGGGTCA--TTT---TT-CTT---CGCGGGTAA-ATATTCTTCATGT--ACA-------ACACACAGAAAAC-TGACCCCTTG-GCCTTTT-TTCTTC-----AA--AA-TAATTAAATTTTTC------TTCA------GCT-----TG------GGG-GTCA-T--TTT
gi|22 : GGGGTCA-TTTTTCTTCATGT--ATA-------ACACACAGAAAAC-TGATCCATGG-GTCTTTT-TTCTTC-----AA--AA-TTATCCAGTTTTTC------TT
gi|23 : aCGGTGTGGTCTATTG---AT-GTTTTTGAGTAC-CGTATT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT
gi|25 : AAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACTtttaaatgtac
gi|26 : aA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATAATGTTCCTC--------TGTACCCACTGAG-AAAAC---TG-TGGCAAAACACATgattta
gi|27 : TCTTCAAACGTTCA-----TGAATTAA-ACTTATT-TTGTTGAAATA-ATACTA-----------
gi|28 : C-A---GGGGGCATTATTCTTCTTTACACCGGAATATT-ATACAAGT
gi|29 : cgcGTACTG-------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATTG----ATA--
gi|3 : a-AAAACAA--GG-ATAAGTCGAAGACC-AGCCCT-TGCGTCTGGC-GCTTA-GTTAA----T------A-TCTG----CA------GCAT--TG---AAATCAAATT----A-TTTAGAGTT--CGAAAAA---CCAGGCTCTTTAAATGTATA-----TGAAATGATAC-TAAC-------AAGCGAATTTTA-----------ACTAGTGTATA---TG---GTAACACACTTTACAAAAGTCCGTTTCTAC--------------------------ACAATGATCACAG-------------------------A--TGC--AT-T--AGCTTTATCAACTGTTACATAAACGTGCAATTGCA-------ACATTAAGT-------G-----TAAA------AT-A-----TA-----------AACTAAAT-------------G---CTATTTC-GTTACCAATATC--TTTACAT-CTCGTATCAACACTTTTGAA--TA----TCA--TTTTACTTTTTAAGGCAGGAGTTA-TT-------ATGTACATGTA-----ACATGCAGAAAACGTG-CCCCTAA-GTCTCCT-TTCTTA-----AA--AATTAATTCAGTTCTTC------TTCAGGAGGGGGTGGGGGT-------GGG-GGCA-T--T------------------TTTCGATGGT-------GGGGAATGACC-C-------------C-CGGTCATTATTCTAT-G---GGAGTCATCATTTTTTTTTnatg
gi|4 : tgTTTA---CCCAATTATCCGTGTGATATAGCG---AT-ATATTTGAGTAT-TGTACT--------TGA----ATGTCTGTTGACTCT--CGT-AA-TA-GA-----------------------------------------AAAAC---TG-CGGTAAAGCACGTAAC-------------C-AAGACTG--CA-ATAAATTGAAAATT-AGCCAA-TGCGTTCGGC-ATTTA-TTTAA----CCTCAGAC-TCTGTACATA------GTGTATTT---CA--CAAA----------------T--C-AAAAC---CCAGGCTCTTT-AATGTACA-----TGAAATGA-ATATGTT-TAATT-ACATT-ATACTA-----------ACAAATGCATtta
gi|5 : tgctaatacctaattttaacatgaaataatctgaatacacaagaagcgttctgcgaaatttagtatataaataaacatgcctggttggtactgatggaatcggtgcattggatcacacggacggcgagaaaccaaggtccttggatcaagtcccaaaaagaggacaatttttacttttaaacaacaaaaagtaaaatataagagagtaaaagaattaccgaaTGTACA-----TGGAATGA-ACATATT-TTGTTGAAATA-ATAACATGCGTATTTGGACTAGTGTATAA---A---GTAAAACACTCCACAGTAGTATGTTTCTACACGGTGATCACAGTTGCATTGTATTAACTGTGA-CATAA-------------------------AAGTGCAA--GCTAAACTTT-T--AA----ACATA----------TGGC-------ATG--AAGTTGAAAATA-----TAAA------CT-AGATGCTATTTTGTT----ACCTATATCTATATCTCGT--A---TCAACACTTTTA--AATATCAATTTAT-TACC-----------TTTGTAAGGCAGGGGCCA--TTT---TT-CTA---CGGGGGTCA-TTTTTC--CATGT--ATA-------ACATGCAGAAA-C-TGACTCCTGG-GTATTTA-TTTTTC-----AA--AA-TAATCCATTTTTTC------TGAA------GCT-----G-------GGGTGTTA-T--T------------------TTTCGAT-GT------CGAAAAATGACCGCCAGATGAAGAAAACACTGTCATTATTCTACGG---GGGGTCATTACTCTTCTTTACACGGA-GTGTttgaactat
gi|6 : TTA---TCCAGCGATCG-TG-GACCTAGCG---AT-GATTTTG------T-TAAT--------TGA----ATATTTGTTGATTCT--CAC-AA-ttgattttttttaaaaac
gi|7 : ttaaaataattttgtctacaagtatttcttgattaatctagatgtcattaaatctaagtccgttgaaaatgtcttgcaccagggacactatttctacgaaaatattttatcaaaattaattaaataaacttttgtaacaatttcgaacacaattattgctaataagtacttttgatatgaaataataaagattattacacaaggggtgctctacctaatttagtgtatgaataaacatggttggtactgatgaaatcgtaagcatggtacattggaccaaacggacgacgacagagccaaggaatttggataaaatcctccagaaaataacaatgtttacttttaaaacacgaaaagtaatatatgtaaccaattaaaaggataTCTTGTTTTCTTATTCTTGTTTGGGACTTACGGAGA-ATTGAAAAATTCTTGTTCTGTTGATCTTGTCCTTAAACGGTCCAATGATCGGTGT-ATCTAGAGTTAATCGTTTATGAGTATGTATACTCCTTATCATGA----ATATTTGTTGACCTTTGCACGAA-TATTATAA----ATAATGCTCCTC--------TGCACCTA------GAAACCCATGATGGCAAAA-GCAAAAACAT-------AATCAAAAACTA--CGAATAAACTGAAGATCAAACCCGTTGC-TTC-GC-ATTAT-GTTAA----A------CTTCTA----TAGAAAAGGAGTA-CT---AATTCAAAGT----ACTTGGGAGTTAACTAAAAAAAGTCAAGCTCTTCAAACGTCTAAAAATTGAATTAA-ACTTATT-TTGTTGAAATA-ATACTA-----------
gi|8 : GGCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTCTTGAAATC-ATTTGG-----------ACCAGTTTATGAGG-A-----AACACACTCTACTTAAGTCCGTTTCTAC--------------------------ACGGTGATCACAATTGCATTGCATT-------------AAGTGCAAATGC--AACTTCGT--AC----ACATG----------TGGAATAAAGTATA--AAAT-------ATAAACTAAATGCTATAT-G-----TATTTCATT----ACCTATATCTATACATATCATA---TCAACACTTTTA--AATAACATTTT---A-CC-----------TTTTTAAGGCAGGGGCCA---TT---TTTCCA---CGGGGGTTA-TTTTTCTG-------------------ACGCAGAAAAC--GACCCCTGG-TTCGTTT-TCTTTC------A--AA-TAATCCAATTGTTC------
gi|9 : TTATA---TTCAATGATCGCCGTGACCTAGCG---AT-GTTTTTG----T-TA-ACT---------GA----ATATTTGTTGACTTT--CAC-AA-TA-GATAGTTAAATAATGCTCCTC--------TTATATCCACTGAGAAAAC---TG-TGGCAAAGAACAT--TTAA-------TATT-AAGACTA--CG-ATAAATTGAAGATC-AACCCA-TGTATTCGGT-ATTTA-GTTAA----T------C-TCTG----TA------GTGTA-TTTTACAATCAAAGTAATGA-TCGAGAGTT--ATAATAA---C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCGTAAGCATTGTACATTGGATCACACGGATGGCGACAGAGACAAGGAATTTGGAACAAATCCTCCAGAATATTACTGTAACAATTTTTTTTTACTTCAAAAAACTGAATAGTAATATAT
Unaligned ( gi|24 ): ACTACACAAGGGGTGCCTTGCCTAATTTAGTATGCGAATAAACATGGTTGTTACTGATGAAATCGTAAGCATGGTAC
Unaligned ( gi|30 ): TTATTTATTCAAAAGTAGTAATGGCCAATATGAG
Alignments
lowQualScore : 11111111111111111111111111111111 11111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 1 3333333 111 22222222 00000000000000000000000000000000 111 2222222 11111111111 111111 111 11111 11 22222222222 33333333 44444444444444444444444444444444444 11 22222 1111 111111 1111111 333333333333333333333333333333333333333333333333333333333333333333333333333 111 1111111 11111 111111 4444444444444 66666666666666666666666666666666666666666666666666666666666666666 111 11 2 222 4444444444444 222
lowQualScore : 1 5 66 1 33 3 2 1111111 000 777 4 99999999 1 66666666 7777 44 3 3 3 7777 44 55555555555555555555555555555555 222 8 4 2 7777777 4 0 55 4 4 66 8 4 55555555555 4 8888 111111 4 777 8888 4 77 1 000 11111 1 4 3 4 5 22 0 33333333333 0 99999999 333 1 0 66666666666666666666666666666666666 11 33333 4444 99 666666 4 5 8888888 222222222222222222222222222222222222222222222222222222222222222222222222222 5 55 4 55 5 55 999 0 33 1 0 666 1 7777777 3 2 2 33333 33 2 0 888888 777777 0000000000000 4 66 00000000000000000000000000000000000000000000000000000000000000000 9 6 5 000 00 6 111 1 9999999999999 1 111
lowQualScore : . . .. . .. . . ....... ... ... . ........ . ........ .... .. . . . .... .. ................................ ... . . . ....... . . .. . . .. . . ........... . .... ...... . ... .... . .. . ... ..... . . . . . .. . ........... . ........ ... . . ................................... .. ..... .... .. ...... . . ....... ........................................................................... . .. . .. . .. ... . .. . . ... . ....... . . . ..... .. . . ...... ...... ............. . .. ................................................................. . . . ... .. . ... . ............. . ...
lowQualScore : 0 5 55 0 55 3 0 7777777 000 888 4 00000000 6 00000000 7777 22 1 1 3 1111 66 11111111111111111111111111111111 555 0 6 4 2222222 0 5 55 0 0 33 0 0 11111111111 0 5555 555555 0 000 5555 0 99 4 000 11111 0 4 9 4 6 22 8 88888888888 3 00000000 888 0 8 88888888888888888888888888888888888 00 33333 2222 22 444444 3 1 6666666 111111111111111111111111111111111111111111111111111111111111111111111111111 3 55 0 00 3 00 333 8 55 5 4 555 5 0000000 1 9 9 22222 99 9 7 888888 222222 3333333333333 4 11 77777777777777777777777777777777777777777777777777777777777777777 8 0 7 000 88 7 000 0 0000000000000 0 000
consensus : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT--A-ATGCTCCTCT-G-A---CC------G-----AAAAC---TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-ATACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----ATT-------------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------ATA-----TA------------------TTTC-T--TACCTATATC-T-TA---C---TCG---T--CAACACTTTTAAATANCA--TT-TTA-CTTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCAT--TTTTT-C-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGTC-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
Reference ( family-1655 ) : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT--A-ATGCTCCTCT-G-A---CC------A-----AAAAC---TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-ATACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATG----------ATT-------------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------ATA-----TA------------------TTT--T--TANCTANATC-T-TA---C---TCG---C--CAACACTTTTAAATANCA--TT-TTN-CTTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCAT--TTTTT-C-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGTC-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
gi|1 : TCTTGTTTTGT-ATTCA-GTTTTGGACTTTAAAAGAGATTGATGCACTC---T-CCGTTATTTTCGCCTTTTTA---TTCAATGTTCGGTGTCATCTAACG---AT-GTTTTTGCGTAC-TGTACT--------TGA----CTATTTGTTGACTTT--TAC-AA-TA-GATAG----TT--A---GCT--------------------------AAAAC---AG-TGGTAAAGCACGTAATCAT-------AATC-AATACTA--CG-ATAAATTGAAGATC-AACCTC-TGTGTTCGGC-ATTTA-CTTAA----T------C-TTTT----TA------GTGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGACTCTTCAAATGTTCA-----TGAAAAGA-ACATATT-TTGTTGAAATG-ATACTA-----------ACCAGTGTATGAGGTACATGTAACACACTTTACTCTAGTGCGTTCCTACACGGTGA-----A-T---ACG----------A---------------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATA--GAATAAAGT-------ATAGA--------ATA-----TA---------------------------AACTAAATT----------------------AATGTTATTAAATAAAA--GT-TTT-CTTTTTTAAGGCAGGAGTC--TTTTTTTCTACGGGAGTCA-TTTTCCTCCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTAAT--TTTTTTC-------------TTTCTAC-GTA-----AGAAAAATTACCCCACG-------------CGGTCGTTATTCCAC-G---GTGGTCATTATTCTTCTTTACACCGA-CTGTCCATACTTTGAATTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAAAAACATTTTGTTGCA-A-----------TTTTCTATATCTATTGGACT
gi|10 : -ATTGAT-CACTC---GTC-GTTATTTTCGCCTATTCA---TT-AATGTTCGGTGTGATCTAGCG---AC-GTTTT--AGTAC-TGTACT--------TGACTATATATTTGTTGCCTTT--CAC-AA-CA-GATAG----ATACA-ATG------TAG-A---T-------------AAAAC---TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATGGAAGATT-AACCCC-TTTGTTCAGC-ATTTG-GTTAA----T------C-TCTG----TA------GCGTA-AT---AAATCAAAGC----A-TTGGGAGTT--CTAAAAA---CCATTCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTGataattac
gi|11 : aatagAATAGCA--TT-TCA-CCTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTC---T--ATATA-----ACA-GCAGAAAAC-TGACCCT--G-GT-TTTT-TTCTTC-----AA--A--TAAACCAGTTTTTT------TTaaaagaaccagta
gi|12 : TA-----CA----AA--TGCAA------CTTTGTACACATATAGAATAAAAT-------ACAAACTAGAATGATATC---TA------------------TTTCAT--TATCTATATCTT-TA---CATATTGTATC--AAACACTTTTAAATA-CA--TT-ATC-C-TTTTTAAAGCA-GGGTCGAGTGTATTCTACGGGAGTCA-TTTTTCTTCACG----TATA-----ACACGCAGAAAAC-CGACCCTTGG-GTC-TCT-TTCTTA-----AA--AA-AAAtttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|13 : TA-----TA------------------TTT--T--TAC--ACATC-T-TA-------TCGA--T--CAACAATTTTAAATAGCA--TT-TTAGTTTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTCATGT--ATA-------ACACGCAGAAAAC-TTAGCCTTGG--TCTTTT-TTC--------AA--AA-TAATCCAGTTTTTC------CTaaata
gi|14 : ttaaatgttcaagcatgattcatgtgtattataccttaaagagcaaacatattttttaatccatatgCCAATGATCGGTGTGATCTAGAT---AT-GTTTATGAGTAT-TATACTCGATCA--TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT--A-ATGCTCCTCT-GCA---CCGA----G-----AAAACCA-TGATGGCAAAGCAC------AT-------AATC-AAAACTA--CG-ATAAACTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTA----TA------GAGTA-NT---CTATTAA--T----A-TT
gi|15 : --ATTTTTTCTACGGGG-TCA-GTTT-CTTCATGT--ATATA------CATGCAGAAAAC-TGACCCCTGG-GTC-TTT-TTCTTCAAATAAA--AA-TAATCCAATTTTTC------TTCA------GCTGGGGATGGGGGGGGGG-GTCAT--T-------------------TATCGAC-GTACATGTAGAAAAATGACCCC--------------------TATTATCCAAC-G---GGGGTCATTATTCTTCTTTAa
gi|16 : --TT-ATA-CTTTTT--AGGCAGGGGTC--ATTTTTC--ACGGGGGTCT-TTTTTCTTCATGT--A-ACA-----ACGCGCAGAAAAC-TGA-ACCTGGCGTCTTTT-TTCTTC-----AC--AA-TAATCC-GATTTTC------TTCAC-----GCT-----A-------GGG-GTCATTATTCTT-C-------------TTT
gi|16 : GG-GTCTTTT-TTCTTC-----ATGTAA-CAACGCG------CAGAAAACTGA------ACC-----T-------GGC-GTC-T--TTTTT-C-------------TTC--AC-----------AATAAT-------C--------------CGATT-TTCTTC-AC-GCTAGGGGTCATTATTCTTCTTTGCACCGG-ATGTCAATACATGTAACTTCAgcaccggatgtcaatacatgtaacttcaataccttccacttg
gi|17 : ttatactttttaggcaggggtcatttttcacggCAGGGATCACTTTTTCTTC-CGT--A-ATAGTTGCAAATGGAGAAAA--TGACCCCTGG-GTCTTTTTTTCTTC-----AA--AA-CAATCCAGTCATTA------TTCT------ACT-----T-------GCG-GTCA---TTATT-C-------------TTTataccttccacttg
gi|18 : TGTTGAATTT--CAC-AA-TA-GATAG----AT--A------------G-A-----------G-----AAAAA---TG-TGGCAAAGCACATAATTATTCTAGTAAATC-AAAACTA--CG-ATAA-TTGAAGATC-AGCTCG-TGTGTTCGGCGATTTAAGTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAacaccggcaaaacgtaaattgtgccactactgggatctataccacg
gi|19 : TGTTGAATTT--CAC-AA-TA-GATAG----AT--A------------G-A-----------G-----AAAAA---TG-TGGCAAAGCACATAATTATTCTAGT-AATC-AAAACTA--CG-ATAAATTGAAGATC-AGCTCG-TGTGTTCGGCGATTTA-GTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAa
gi|2 : TTA---TCCAACGGTCGGTGTGACCTAGCG---AC-GTTTTTG------T-TAAT--------TGA----ATATTTGTTGACTTT--CAC-AAATG-GATAG----AT--A-ATGCTCCTCT-GTA---CCCATTGAG-----AAAAC---TG---GCAAAGCACAT--TTAA-------TATC-AAGACTATACG-ATAAACTGAAGATC-AATCCA-TGTGTTCTGC-ATTTA-ATTAACTAAT------T-TCTG----TA------GCATA-TT---TAATCAAAGT----A-TTGAGAGTT--CTAATAA---CTAGGATCTTTAAATGTACA-----TGAAAATA-ACGTATTACTATC-AAGTGTATTTTG-----------ACTAGTGTACAAG------GTAACACGCTTTACTTTAGCTCATTTCTACACGGTAATCACAACTGGAATGT---------ATTAACCGTTACATAAAA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------ATA-----TA---------------------------AACTAAATa
gi|2 : agaA------TTTTAAAAATATAGGTAATGAAAT-------ACATAT-------AT------TA------------------TTT--T--TACATATAT----TA---T---TGA---T--CAACACTTTTGAATAGCA--TT-TTA-CTTTTTTAAGACAAGGGTC--AT-TTTTCTATGAGGGTCA-TTTTTCTTCATG----TATA-----ACACGCAG--AAC-TGACCACTGG-ATCTTTT-TTCTTTAAAA-AA--AA-AAATCCAATTTTTC------TTCA------GCT-----G-------NNN-NNNNN--NNNNN-NNNNNNNNNNNNATTTTTACC-GGA-----AGTAAAATTA-CCC-C--------------TGGTC---ATTCTAC-G---GGGGTCATTATTCTTCTgctatatgtatttcattacctatattttaaaaatataggtaatgaaatacatatattatttttacatatattattgatcaacacttttgaatagcattttacttttttaagacaagggtcatttttctatgagggtcatttttcttcatgtataacacgcagaactgaccactggatcttttttctttaaaaaaaaaaatccaatttttcttcagctgnnnnnnnnnnnnnnnnnnnnnnnnnatttttaccggaagtaaaattacccctggtcattctacgggggtcattattcttct
gi|20 : agattatccaacggtcggtgtgacctagcgacgtttttgttaattgaatatttgttgactttcacaaatggatagataatgctcctctgtacccattgagaaaactggcaaagcacatttaatatcaagactatacgataaactgaagatcaatccatgtgttctgcatttaattaactaatttctgtagcatatttaatcaaagtattgagagttctaataactaggatctttaaatgtacatgaaaataacgtattactatcaagtgtattttgactagtgtacaaggtaacacgctttactttagctcatttctacacggtaatcacaactggaatgtattaaccgttacataaaagtgcaaatgcaactttgtacacatatggaataaagtataaaatataaactaaatgctatatgtatttcattacctatTATCA--TT-TTA-CTCTTTTAATGCAGGGGTC--ATTTTT-CTTCGCGGGTAA-ATATTCTTCATGT--ACA-------ACACACAGAAAAC-TGACCCCTTG-GCCTTTT-TTCTTC-----AA--AA-TAATTAAATTTTTC------TTCA------GCT-----TG------GGG-GTCAT--TTT
gi|22 : GGGGTCA-TTTTTCTTCATGT--ATA-------ACACACAGAAAAC-TGATCCATGG-GTCTTTT-TTCTTC-----AA--AA-TTATCCAGTTTTTC------TT
gi|23 : aCGGTGTGGTCTATTG---AT-GTTTTTGAGTAC-CGTATT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT--
gi|25 : AAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACTtttaaatgtac
gi|26 : aA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT--A-ATGTTCCTCT-GTA---CCCACTGAG-----AAAAC---TG-TGGCAAAACACATgattta
gi|27 : TCTTCAAACGTTCA-----TGAATTAA-ACTTATT-TTGTTGAAATA-ATACTA-----------
gi|28 : C-A---GGGGGCATTATTCTTCTTTACACCGGAATATT-ATACAAGT
gi|29 : cgcAGTAC-TGT------------GA----ATATTTGTTGACTTT--CAC-AA-TA-GATTG----AT--ANATG
gi|3 : -AAAACAA--GG-ATAAGTCGAAGACC-AGCCCT-TGCGTCTGGC-GCTTA-GTTAA----T------A-TCTG----CA------GCAT--TG---AAATCAAATT----A-TTTAGAGTT--CGAAAAA---CCAGGCTCTTTAAATGTATA-----TGAAATGATAC-TAAC-------AAGCGAATTTTA-----------ACTAGTGTATA---TG---GTAACACACTTTACAAAAGTCCGTTTCTACACAATGATCACA---G--ATGCATTAGCTTTATC-------------AA--CTGTTACATA----AACGTGCAA--------TTGCA-ACATTAAGTGTAAAAT-------ATAAA--------CTAAATGCTA------------------TTTCGT--TACCAATATCTT-TACATC---TCGTA-T--CAACACTTTTGAATATCA--TT-TTA-C-TTTTTAAGGCAGGAGTT--ATT--------------------------ATGTACATGTA-----ACATGCAGAAAACGTG-CCCCTAA-GTCTCCT-TTCTTA-----AA--AATTAATTCAGTTCTTC------TTCAGGAGGGGGTGGGGGT-------GGG-GGCAT--T-------------------TTTCGATGGT-------GGGGAATGA-CCC-C--------------CGGTCATTATTCTAT-G---GGAGTCATCATTTTTTTTT
gi|4 : tgTTTA---CCCAATTATCCGTGTGATATAGCG---AT-ATATTTGAGTAT-TGTACT--------TGA----ATGTCTGTTGACTCT--CGT-AA-TA-GA--------------------------------------------AAAAC---TG-CGGTAAAGCACGTAAC-------------C-AAGACTG--CA-ATAAATTGAAAATT-AGCCAA-TGCGTTCGGC-ATTTA-TTTAA----CCTCAGAC-TCTGTACATA------GTGTATTT---CA--CAAA----------------T--C-AAAAC---CCAGGCTCTTT-AATGTACA-----TGAAATGA-ATATGTT-TAATT-ACATT-ATACTA-----------ACAAATGCATtta
gi|5 : tgctaatacctaattttaacatgaaataatctgaatacacaagaagcgttctgcgaaatttagtatataaataaacatgcctggttggtactgatggaatcggtgcattggatcacacggacggcgagaaaccaaggtccttggatcaagtcccaaaaagaggacaatttttacttttaaacaacaaaaagtaaaatataagagagtaaaagaattaccgaaTGTACA-----TGGAATGA-ACATATT-TTGTTGAAATA-ATAACATGCGTATTTGGACTAGTGTATAA---A---GTAAAACACTCCACAGTAGTATGTTTCTACACGGTGATCACAG-T----TGCATTGT----ATT-------------AACTGTGA----CATAAAAG--TGCAAGCTAAACTTT-TAAACATATGGCATGAAGTTGAAAATATAAA--------CTAGATGCTA------------------TTT--TGTTACCTATATC-TATAT--C---TCG---TATCAACACTTTTAAATATCAATTTATTA-CCTTTGTAAGGCAGGGGCC--ATTTTT-CTACGGGGGTCA-TTTTTC--CATGT--ATA-------ACATGCAGAAA-C-TGACTCCTGG-GTATTTA-TTTTTC-----AA--AA-TAATCCATTTTTTC------TGAA------GCT-----G-------GGGTGTTAT--T-------------------TTTCGAT-GT------CGAAAAATGACCGC-CAGATGAAGAAAACACTGTCATTATTCTACGG---GGGGTCATTACTCTTCTTTACACGGA-GTGTttgaactat
gi|6 : TTA---TCCAGCGATCG-TG-GACCTAGCG---AT-GATTTTG------T-TAAT--------TGA----ATATTTGTTGATTCT--CAC-AA-ttgattttttttaaaaac
gi|7 : ttaaaataattttgtctacaagtatttcttgattaatctagatgtcattaaatctaagtccgttgaaaatgtcttgcaccagggacactatttctacgaaaatattttatcaaaattaattaaataaacttttgtaacaatttcgaacacaattattgctaataagtacttttgatatgaaataataaagattattacacaaggggtgctctacctaatttagtgtatgaataaacatggttggtactgatgaaatcgtaagcatggtacattggaccaaacggacgacgacagagccaaggaatttggataaaatcctccagaaaataacaatgtttacttttaaaacacgaaaagtaatatatgtaaccaattaaaaggataTCTTGTTTTCTTATTCTTGTTTGGGACTTACGGAGA-ATTGAAAAATTCTTGTTCTGTTGATCTTGTCCTTAAACGGTCCAATGATCGGTGT-ATCTAGAGTTAATCGTTTATGAGTATGTATACTCCTTATCATGA----ATATTTGTTGACCTTTGCACGAA-TATTATAA----AT--A-ATGCTCCTCT-GCA---CCT-----A-----GAAACCCATGATGGCAAAA-GCAAAAACAT-------AATCAAAAACTA--CGAATAAACTGAAGATCAAACCCGTTGC-TTC-GC-ATTAT-GTTAA----A------CTTCTA----TAGAAAAGGAGTA-CT---AATTCAAAGT----ACTTGGGAGTTAACTAAAAAAAGTCAAGCTCTTCAAACGTCTAAAAATTGAATTAA-ACTTATT-TTGTTGAAATA-ATACTA-----------
gi|8 : GGCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTCTTGAAATC-ATTTGG-----------ACCAGTTTATGAGG-A-----AACACACTCTACTTAAGTCCGTTTCTACACGGTGATCACAA-T----TGCATTGC----ATT-------------AA--GTG-----CA----AA--TGCAA------CTTCGTACACATGTGGAATAAAGT-------ATAAA--------ATA-----TAAACTAAATGCTATATGTATTTCAT--TACCTATATC-TATA---CATATCA---TATCAACACTTTTAAATAACA--TT-TTA-CCTTTTTAAGGCAGGGGCC--ATTTTTCC-ACGGGGGTTA-TTTTTCT----G---------------ACGCAGAAAAC--GACCCCTGG-TTCGTTT-TCTTTC-----AA--A--TAATCCAATTGTTC------
gi|9 : TTATA---TTCAATGATCGCCGTGACCTAGCG---AT-GTTTTTG------T-TAAC--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAGTTAAAT--A-ATGCTCCTCT-T-ATATCC------ACTGAGAAAAC---TG-TGGCAAAGAACAT--TTAA-------TATT-AAGACTA--CG-ATAAATTGAAGATC-AACCCA-TGTATTCGGT-ATTTA-GTTAA----T------C-TCTG----TA------GTGTA-TTTTACAATCAAAGTAATGA-TCGAGAGTT--ATAATAA---C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCGTAAGCATTGTACATTGGATCACACGGATGGCGACAGAGACAAGGAATTTGGAACAAATCCTCCAGAATATTACTGTAACAATTTTTTTTTACTTCAAAAAACTGAATAGTAATATAT
Unaligned ( gi|24 ): ACTACACAAGGGGTGCCTTGCCTAATTTAGTATGCGAATAAACATGGTTGTTACTGATGAAATCGTAAGCATGGTAC
Unaligned ( gi|30 ): TTATTTATTCAAAAGTAGTAATGGCCAATATGAG
Alignments
lowQualScore : 111111111111111111111111111 11111111111111111111111111111111111111111111111111111111
lowQualScore : 1 11 1 1 3333333 111 22222222 000000000000000000000000000 11 2222222 11111111111 111111 111 11111 22222222222 33333333 7777777777777777777777777777777 11 22222 1111 111111 11111111111111111111111111111111111111111111111111111111 555555555555555555555 111 1111111 11111 111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111 11 111 222 4444444444444 222
lowQualScore : 1 5 66 1 33 3 2 1111111 000 777 4 99999999 1 66666666 7777 44 3 3 3 7777 555555555555555555555555555 11 8 9999 7777777 4 0 55 4 4 66 8 4 55555555555 4 8888 111111 4 777 8888 4 77 1 000 11111 1 4 3 4 5 77 5 0 33333333333 0 99999999 333 1 0 3333333333333333333333333333333 11 33333 4444 99 666666 4 5 0 99999999999999999999999999999999999999999999999999999999 777777777777777777777 5 5 55 4 4 1 55 999 0 33 1 0 666 1 7777777 3 2 2 33333 33 2 0 888888 777777 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 9 6 5 000 00 888 111 1 9999999999999 1 111
lowQualScore : . . .. . .. . . ....... ... ... . ........ . ........ .... .. . . . .... ........................... .. . .... ....... . . .. . . .. . . ........... . .... ...... . ... .... . .. . ... ..... . . . . . .. . . ........... . ........ ... . . ............................... .. ..... .... .. ...... . . . ........................................................ ..................... . . .. . . . .. ... . .. . . ... . ....... . . . ..... .. . . ...... ...... .......................................................................................... . . . ... .. ... ... . ............. . ...
lowQualScore : 0 5 55 0 55 3 0 7777777 000 888 4 00000000 6 00000000 7777 22 1 1 3 1111 999999999999999999999999999 00 0 6666 2222222 0 5 55 0 0 33 0 0 11111111111 0 5555 555555 0 000 5555 0 99 4 000 11111 0 4 9 4 6 22 0 8 88888888888 3 00000000 888 0 8 6666666666666666666666666666666 00 33333 2222 22 444444 3 1 1 77777777777777777777777777777777777777777777777777777777 000000000000000000000 7 3 55 0 0 9 00 333 8 55 5 4 555 5 0000000 1 9 9 22222 99 9 7 888888 222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 0 7 000 88 777 000 0 0000000000000 0 000
consensus : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCT-G-A---CC-A----GAAAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----A---TT------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGTATAAA--------ATA------------------TA------------------TT--TCATTACCTATATC-T-TA---C---TCG--T--C-AACACTTTTAAATANCA--TT-TTA-CCTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
Reference ( family-1655 ) : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCT-G-A---CC------GAAAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----A---TT------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGTATAAA--------ATA------------------TA------------------TT--TC-TTACCTATATC-T-TA---C---TCG--T--C-AACACTTTTAAATANCA--TT-TTA-CTTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
gi|1 : TCTTGTTTTGT-ATTCA-GTTTTGGACTTTAAAAGAGATTGATGCACTC---T-CCGTTATTTTCGCCTTTTTA---TTCAATGTTCGGTGTCATCTAACG---AT-GTTTTTGCGTAC-TGTACT--------TGA----CTATTTGTTGACTTT--TAC-AA-TA-GATAG----TTA----GCT---------------------AAAAC--AG-TGGTAAAGCACGTAATCAT-------AATC-AATACTA--CG-ATAAATTGAAGATC-AACCTC-TGTGTTCGGC-ATTTA-CTTAA----T------C-TTTT----TA------GTGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGACTCTTCAAATGTTCA-----TGAAAAGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACCAGTGTATGAGGTACATGTAACACACTTTACTCTAGTGCGTTCCTACACGGTGA-----------ATAC---G-----A-----------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATA--GAATAAAGTATAGA--------ATA------------------TA---------------------------AACTAAAT----TA---A---T-G--T--T-A------TTAAATAAAA--GT-TTT-CTTTTTTAAGGCAGGAGTC--TTTTTTTCTACGGGAGTCA-TTTTCCTCCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTAATT--TTTTTC-------------TTTCTAC-GTA-----AGAAAAATTACCCCACG-------------CGGTCGTTATTCCAC-G---GTGGTCATTATTCTTCTTTACACCGA-CTGTCC-ATACTTTGAATTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAAAAACATTTTGTTGCA-A-----------TTTTCTATATCTATTGGACT
gi|10 : -ATTGAT-CACTC---GTC-GTTATTTTCGCCTATTCA---TT-AATGTTCGGTGTGATCTAGCG---AC-GTTTT--AGTAC-TGTACT--------TGACTATATATTTGTTGCCTTT--CAC-AA-CA-GATAG----ATACAATG------TAG-A---T--------AAAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATGGAAGATT-AACCCC-TTTGTTCAGC-ATTTG-GTTAA----T------C-TCTG----TA------GCGTA-AT---AAATCAAAGC----A-TTGGGAGTT--CTAAAAA---CCATTCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTGataattac
gi|11 : aatagAATAGCA--TT-TCA-CCTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTC---T--ATATA-----ACA-GCAGAAAAC-TGACCCT--G-GT-TTTT-TTCTTC-----AA--A--TAAACCAGTTTTTT------TTaaaagaaccagta
gi|12 : TA-----CA----AA--TGCAA------CTTTGTACACATATAGAATAAAATACAAACTAGAATGATATC----------------TA------------------TT--TCATTATCTATATCTT-TA---CATATTGTAT--CAAACACTTTTAAATA-CA--TT-AT--CCTTTTTAAAGCA-GGGTCGAGTGTATTCTACGGGAGTCA-TTTTTCTTCACG----TATA-----ACACGCAGAAAAC-CGACCCTTGG-GTC-TCT-TTCTTA-----AA--AA-AAAtttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|13 : TA------------------TA------------------TT--T--TTAC--ACATC-T-TA-------TCGA-T--C-AACAATTTTAAATAGCA--TT-TTAGTTTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTCATGT--ATA-------ACACGCAGAAAAC-TTAGCCTTGG--TCTTTT-TTC--------AA--AA-TAATCCAGTTTTTC------CTaaata
gi|14 : ttaaatgttcaagcatgattcatgtgtattataccttaaagagcaaacatattttttaatccatatgCCAATGATCGGTGTGATCTAGAT---AT-GTTTATGAGTAT-TATACTCGATCA--TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCT-GCA---CCGA----GAAAACCATGATGGCAAAGCAC------AT-------AATC-AAAACTA--CG-ATAAACTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTA----TA------GAGTA-NT---CTATTAA--T----A-TT
gi|15 : --ATTTTTTCTACGGGG-TCA-GTTT-CTTCATGT--ATATA------CATGCAGAAAAC-TGACCCCTGG-GTC-TTT-TTCTTCAAATAAA--AA-TAATCCAATTTTTC------TTCA------GCTGGGGATGGGGGGGGGG-GTCA-T--T------------------TATCGAC-GTACATGTAGAAAAATGACCCC--------------------TATTATCCAAC-G---GGGGTCATTATTCTTCTTTAa
gi|16 : --TT-ATA-CTTTTT--AGGCAGGGGTC--ATTTTTC--ACGGGGGTCT-TTTTTCTTCATGT--A-ACA-----ACGCGCAGAAAAC-TGA-ACCTGGCGTCTTTT-TTCTTC-----AC--AA-TAATCC-GATTTTC------TTCAC-----GCT-----A-------GGG-GTCA-TTATTCTTC-------------TTT
gi|16 : GG-GTCTTTT-TTCTTC-----ATGTAA-CAACGCG------CAGAAAACTGA------ACC-----T-------GGC-GTC--T--TTTTTC-------------TTC--AC-----------AATAAT-------C--------------CGATT-TTCTTC-AC-GCTAGGGGTCATTATTCTTCTTTGCACCGG-ATGT-CAATACATGTAACTTCAgcaccggatgtcaatacatgtaacttcaataccttccacttg
gi|17 : ttatactttttaggcaggggtcatttttcacggCAGGGATCACTTTTTCTTC-CGT--A-ATAGTTGCAAATGGAGAAAA--TGACCCCTGG-GTCTTTTTTTCTTC-----AA--AA-CAATCCAGTCATTA------TTCT------ACT-----T-------GCG-GTCA----TTATTC-------------TTTataccttccacttg
gi|18 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA-------------G-A-----------GAAAAA--TG-TGGCAAAGCACATAATTATTCTAGTAAATC-AAAACTA--CG-ATAA-TTGAAGATC-AGCTCG-TGTGTTCGGCGATTTAAGTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAacaccggcaaaacgtaaattgtgccactactgggatctataccacg
gi|19 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA-------------G-A-----------GAAAAA--TG-TGGCAAAGCACATAATTATTCTAGT-AATC-AAAACTA--CG-ATAAATTGAAGATC-AGCTCG-TGTGTTCGGCGATTTA-GTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAa
gi|2 : TTA---TCCAACGGTCGGTGTGACCTAGCG---AC-GTTTTTG------T-TAAT--------TGA----ATATTTGTTGACTTT--CAC-AAATG-GATAG----ATA--ATGCTCCTCT-GTA---CCCATTGAGAAAAC--TG---GCAAAGCACAT--TTAA-------TATC-AAGACTATACG-ATAAACTGAAGATC-AATCCA-TGTGTTCTGC-ATTTA-ATTAACTAAT------T-TCTG----TA------GCATA-TT---TAATCAAAGT----A-TTGAGAGTT--CTAATAA---CTAGGATCTTTAAATGTACA-----TGAAAATA-ACGTATTACTATC-AAGTGTA-TTTTG-----------ACTAGTGTACAAG------GTAACACGCTTTACTTTAGCTCATTTCTACACGGTAATCACAACTGGAATGTATTA-----ACCGTTACATAAAA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGTATAAA--------ATATAAACTAAATGCTATATGTA------------------TT--TCATTACCTATATT-T-TA---a
gi|2 : agaA------TTTTAAAAATATAGGTAATGAAATACA-----------TA------------------TA------------------TTATTT-TTACATATAT----TA---T---TGA--T--C-AACACTTTTGAATAGCA--TT-TTA-CTTTTTTAAGACAAGGGTC--A-TTTTTCTATGAGGGTCA-TTTTTCTTCATG----TATA-----ACACGCAG--AAC-TGACCACTGG-ATCTTTT-TTCTTTAAAA-AA--AA-AAATCCAATTTTTC------TTCA------GCT-----G-------NNN-NNNN-N--NNNNNNNNNNNNNNNNNATTTTTACC-GGA-----AGTAAAATTA-CCC-C--------------TGGTC---ATTCTAC-G---GGGGTCATTATTCTTCTaaaatataggtaatgaaatacatatattatttttacatatattattgatcaacacttttgaatagcattttacttttttaagacaagggtcatttttctatgagggtcatttttcttcatgtataacacgcagaactgaccactggatcttttttctttaaaaaaaaaaatccaatttttcttcagctgnnnnnnnnnnnnnnnnnnnnnnnnnatttttaccggaagtaaaattacccctggtcattctacgggggtcattattcttct
gi|20 : agattatccaacggtcggtgtgacctagcgacgtttttgttaattgaatatttgttgactttcacaaatggatagataatgctcctctgtacccattgagaaaactggcaaagcacatttaatatcaagactatacgataaactgaagatcaatccatgtgttctgcatttaattaactaatttctgtagcatatttaatcaaagtattgagagttctaataactaggatctttaaatgtacatgaaaataacgtattactatcaagtgtattttgactagtgtacaaggtaacacgctttactttagctcatttctacacggtaatcacaactggaatgtattaaccgttacataaaagtgcaaatgcaactttgtacacatatggaataaagtataaaatataaactaaatgctatatgtatttcattacctatTATCA--TT-TTA-CTCTTTTAATGCAGGGGTC--ATTTTT-CTTCGCGGGTAA-ATATTCTTCATGT--ACA-------ACACACAGAAAAC-TGACCCCTTG-GCCTTTT-TTCTTC-----AA--AA-TAATTAAATTTTTC------TTCA------GCT-----TG------GGG-GTCA-T--TTT
gi|22 : GGGGTCA-TTTTTCTTCATGT--ATA-------ACACACAGAAAAC-TGATCCATGG-GTCTTTT-TTCTTC-----AA--AA-TTATCCAGTTTTTC------TT
gi|23 : aCGGTGTGGTCTATTG---AT-GTTTTTGAGTAC-CGTATT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT
gi|25 : AAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACTtttaaatgtac
gi|26 : aA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGTTCCTCT-GTA---CCCACTGAGAAAAC--TG-TGGCAAAACACATgattta
gi|27 : TCTTCAAACGTTCA-----TGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|28 : C-A---GGGGGCATTATTCTTCTTTACACCGGAATAT-T-ATACAAGT
gi|29 : cgcAGTAC-TGT------------GA----ATATTTGTTGACTTT--CAC-AA-TA-GATTG----ATAN-ATG
gi|3 : -AAAACAA--GG-ATAAGTCGAAGACC-AGCCCT-TGCGTCTGGC-GCTTA-GTTAA----T------A-TCTG----CA------GCAT--TG---AAATCAAATT----A-TTTAGAGTT--CGAAAAA---CCAGGCTCTTTAAATGTATA-----TGAAATGATAC-TAAC-------AAGCG-AATTTTA-----------ACTAGTGTATA---TG---GTAACACACTTTACAAAAGTCCGTTTCTACACAATGATCACA---G--ATGCATTAGCTTTA---TC------AA--CTGTTACATA----AACGTGCAA--------TTGCA-ACATTAAGTGTAAAATATAAA--------CTAAATGC-------------TA------------------TT--TCGTTACCAATATCTT-TACATC---TCGTAT--C-AACACTTTTGAATATCA--TT-TTA-C-TTTTTAAGGCAGGAGTT--ATT--------------------------ATGTACATGTA-----ACATGCAGAAAACGTG-CCCCTAA-GTCTCCT-TTCTTA-----AA--AATTAATTCAGTTCTTC------TTCAGGAGGGGGTGGGGGT-------GGG-GGCA-T--T------------------TTTCGATGGT-------GGGGAATGA-CCC-C--------------CGGTCATTATTCTAT-G---GGAGTCATCATTTTTTTTT
gi|4 : tgTTTA---CCCAATTATCCGTGTGATATAGCG---AT-ATATTTGAGTAT-TGTACT--------TGA----ATGTCTGTTGACTCT--CGT-AA-TA-GA--------------------------------------AAAAC--TG-CGGTAAAGCAC------GT-------AACC-AAGACTG--CA-ATAAATTGAAAATT-AGCCAA-TGCGTTCGGC-ATTTA-TTTAA----CCTCAGAC-TCTGTACATA------GTGTATTT---CA--CAAA----------------T--C-AAAAC---CCAGGCTCTTT-AATGTACA-----TGAAATGA-ATATGTT-TAATT-ACATT-A-TACTA-----------ACAAATGCATtta
gi|5 : tgctaatacctaattttaacatgaaataatctgaatacacaagaagcgttctgcgaaatttagtatataaataaacatgcctggttggtactgatggaatcggtgcattggatcacacggacggcgagaaaccaaggtccttggatcaagtcccaaaaagaggacaatttttacttttaaacaacaaaaagtaaaatataagagagtaaaagaattaccgaaTGTACA-----TGGAATGA-ACATATT-TTGTTGAAATA-A-TAACATGCGTATTTGGACTAGTGTATAA---A---GTAAAACACTCCACAGTAGTATGTTTCTACACGGTGATCACAG-T----TGCATTGT----A---TT------AACTGTGA----CATAAAAG--TGCAAGCTAAACTTT-TAAACATATGGCATGAAGTTGAAA--------ATA------------------TAAACTAGATGCTAT-----TT--TG-TTACCTATATC-TATAT--C---TCG--TATC-AACACTTTTAAATATCAATTTATTA-CCTTTGTAAGGCAGGGGCC--ATTTTT-CTACGGGGGTCA-TTTTTC--CATGT--ATA-------ACATGCAGAAA-C-TGACTCCTGG-GTATTTA-TTTTTC-----AA--AA-TAATCCATTTTTTC------TGAA------GCT-----G-------GGGTGTTA-T--T------------------TTTCGAT-GT------CGAAAAATGACCGC-CAGATGAAGAAAACACTGTCATTATTCTACGG---GGGGTCATTACTCTTCTTTACACGGA-GTGT-ttgaactat
gi|6 : TTA---TCCAGCGATCG-TG-GACCTAGCG---AT-GATTTTG------T-TAAT--------TGA----ATATTTGTTGATTCT--CAC-AA-ttgattttttttaaaaac
gi|7 : ttaaaataattttgtctacaagtatttcttgattaatctagatgtcattaaatctaagtccgttgaaaatgtcttgcaccagggacactatttctacgaaaatattttatcaaaattaattaaataaacttttgtaacaatttcgaacacaattattgctaataagtacttttgatatgaaataataaagattattacacaaggggtgctctacctaatttagtgtatgaataaacatggttggtactgatgaaatcgtaagcatggtacattggaccaaacggacgacgacagagccaaggaatttggataaaatcctccagaaaataacaatgtttacttttaaaacacgaaaagtaatatatgtaaccaattaaaaggataTCTTGTTTTCTTATTCTTGTTTGGGACTTACGGAGA-ATTGAAAAATTCTTGTTCTGTTGATCTTGTCCTTAAACGGTCCAATGATCGGTGT-ATCTAGAGTTAATCGTTTATGAGTATGTATACTCCTTATCATGA----ATATTTGTTGACCTTTGCACGAA-TATTATAA----ATA--ATGCTCCTCT-GCA---CCTA----GAAACCCATGATGGCAAAA-GCAAAAACAT-------AATCAAAAACTA--CGAATAAACTGAAGATCAAACCCGTTGC-TTC-GC-ATTAT-GTTAA----A------CTTCTA----TAGAAAAGGAGTA-CT---AATTCAAAGT----ACTTGGGAGTTAACTAAAAAAAGTCAAGCTCTTCAAACGTCTAAAAATTGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|8 : GGCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTCTTGAAATC-A-TTTGG-----------ACCAGTTTATGAGG-A-----AACACACTCTACTTAAGTCCGTTTCTACACGGTGATCACAA-T----TGCATTGC----A---TT------AA--GTG-----CA----AA--TGCAA------CTTCGTACACATGTGGAATAAAGTATAAA--------ATA------------------TAAACTAAATGCTATATGTATT--TCATTACCTATATC-TATA---CATATCA--TATC-AACACTTTTAAATAACA--TT-TTA-CCTTTTTAAGGCAGGGGCC--ATTTTTCC-ACGGGGGTTA-TTTTTCT----G---------------ACGCAGAAAAC--GACCCCTGG-TTCGTTT-TCTTTC-----AA--A--TAATCCAATTGTTC------
gi|9 : TTATA---TTCAATGATCGCCGTGACCTAGCG---AT-GTTTTTG------T-TAAC--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAGTTAAATA--ATGCTCCTCT-T-ATATCCACTGA-GAAAAC--TG-TGGCAAAGAACAT--TTAA-------TATT-AAGACTA--CG-ATAAATTGAAGATC-AACCCA-TGTATTCGGT-ATTTA-GTTAA----T------C-TCTG----TA------GTGTA-TTTTACAATCAAAGTAATGA-TCGAGAGTT--ATAATAA---C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCGTAAGCATTGTACATTGGATCACACGGATGGCGACAGAGACAAGGAATTTGGAACAAATCCTCCAGAATATTACTGTAACAATTTTTTTTTACTTCAAAAAACTGAATAGTAATATAT
Unaligned ( gi|24 ): ACTACACAAGGGGTGCCTTGCCTAATTTAGTATGCGAATAAACATGGTTGTTACTGATGAAATCGTAAGCATGGTAC
Unaligned ( gi|30 ): TTATTTATTCAAAAGTAGTAATGGCCAATATGAG
Alignments
lowQualScore : 1 11 1 1 3333333 111 22222222 999999999999999999999999999999 11 2222222 11111111111 111111 111 11111 22222222222 33333333 7777777777777777777777777777777 11 22222 1111 111111 1111111 9999999999999999999999999999999999999999999999999 555555555555555555555 111 1111111 11111 111111 4444444444444 66666666666666666666666666666666666666666666666666666666666666666 111 11 2 222 4444444444444 222
lowQualScore : 1 5 66 1 33 3 2 1111111 000 777 4 99999999 1 66666666 7777 44 3 3 3 7777 888888888888888888888888888888 55 11 8 4 2 7777777 4 0 55 4 4 66 8 4 55555555555 4 8888 111111 4 777 8888 4 77 1 000 11111 1 4 3 4 5 77 5 0 33333333333 0 99999999 333 1 0 3333333333333333333333333333333 11 33333 4444 99 666666 4 5 8888888 0 1111111111111111111111111111111111111111111111111 5 77 777777777777777777777 5 5 66 4 4 55 999 0 33 1 0 666 1 7777777 3 2 2 33333 33 2 0 888888 777777 0000000000000 4 66 00000000000000000000000000000000000000000000000000000000000000000 9 6 5 000 00 6 111 1 9999999999999 1 111
lowQualScore : . . .. . .. . . ....... ... ... . ........ . ........ .... .. . . . .... .............................. .. .. . . . ....... . . .. . . .. . . ........... . .... ...... . ... .... . .. . ... ..... . . . . . .. . . ........... . ........ ... . . ............................... .. ..... .... .. ...... . . ....... . ................................................. . .. ..................... . . .. . . .. ... . .. . . ... . ....... . . . ..... .. . . ...... ...... ............. . .. ................................................................. . . . ... .. . ... . ............. . ...
lowQualScore : 0 5 55 0 55 3 0 7777777 000 888 4 00000000 6 00000000 7777 22 1 1 3 1111 222222222222222222222222222222 55 00 0 6 4 2222222 0 5 55 0 0 33 0 0 11111111111 0 5555 555555 0 000 5555 0 99 4 000 11111 0 4 9 4 6 22 0 8 88888888888 3 00000000 888 0 8 6666666666666666666666666666666 00 33333 2222 22 444444 3 1 6666666 1 6666666666666666666666666666666666666666666666666 0 44 000000000000000000000 7 3 11 4 4 00 333 8 55 5 4 555 5 0000000 1 9 9 22222 99 9 7 888888 222222 3333333333333 4 11 77777777777777777777777777777777777777777777777777777777777777777 8 0 7 000 88 7 000 0 0000000000000 0 000
consensus : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTG-A---CC-----A----GA--AAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----A---TT------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------ATA-A--C-------------TA------------------TT-TCGTTACCTATATC-T-TA---C---TCG--T--C-AACACTTTTAAATANCA--TT-TTA-CCTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCAT--TTTTT-C-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGTC-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
Reference ( family-1655 ) : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTG-A---CC-----A----GA--AAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----A---TT------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------ATA------------------TA------------------TT-TCATTACCTATATC-T-TA---C---TCG--T--C-AACACTTTTAAATANCA--TT-TTA-CCTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCAT--TTTTT-C-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGTC-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
gi|1 : TCTTGTTTTGT-ATTCA-GTTTTGGACTTTAAAAGAGATTGATGCACTC---T-CCGTTATTTTCGCCTTTTTA---TTCAATGTTCGGTGTCATCTAACG---AT-GTTTTTGCGTAC-TGTACT--------TGA----CTATTTGTTGACTTT--TAC-AA-TA-GATAG----TTA----GCT------------------------A--AAAC--AG-TGGTAAAGCACGTAATCAT-------AATC-AATACTA--CG-ATAAATTGAAGATC-AACCTC-TGTGTTCGGC-ATTTA-CTTAA----T------C-TTTT----TA------GTGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGACTCTTCAAATGTTCA-----TGAAAAGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACCAGTGTATGAGGTACATGTAACACACTTTACTCTAGTGCGTTCCTACACGGTGA-----------ATAC---G-----A-----------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATA--GAATAAAGT-------ATAGA--------ATA------------------TA--------------------------AACTAAAT----TA---A---T-G--T--T-A------TTAAATAAAA--GT-TTT-CTTTTTTAAGGCAGGAGTC--TTTTTTTCTACGGGAGTCA-TTTTCCTCCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTAAT--TTTTTTC-------------TTTCTAC-GTA-----AGAAAAATTACCCCACG-------------CGGTCGTTATTCCAC-G---GTGGTCATTATTCTTCTTTACACCGA-CTGTCCATACTTTGAATTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAAAAACATTTTGTTGCA-A-----------TTTTCTATATCTATTGGACT
gi|10 : -ATTGAT-CACTC---GTC-GTTATTTTCGCCTATTCA---TT-AATGTTCGGTGTGATCTAGCG---AC-GTTTT--AGTAC-TGTACT--------TGACTATATATTTGTTGCCTTT--CAC-AA-CA-GATAG----ATACAATGT-------------------A----GATAAAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATGGAAGATT-AACCCC-TTTGTTCAGC-ATTTG-GTTAA----T------C-TCTG----TA------GCGTA-AT---AAATCAAAGC----A-TTGGGAGTT--CTAAAAA---CCATTCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTGataattac
gi|11 : aatagAATAGCA--TT-TCA-CCTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTC---T--ATATA-----ACA-GCAGAAAAC-TGACCCT--G-GT-TTTT-TTCTTC-----AA--A--TAAACCAGTTTTTT------TTaaaagaaccagta
gi|12 : TA-----CA----AA--TGCAA------CTTTGTACACATATAGAATAAAAT-------ACAAACTAGAATGATATC----------------TA------------------TT-TCATTATCTATATCTT-TA---CATATTGTAT--CAAACACTTTTAAATA-CA--TT-AT--CCTTTTTAAAGCA-GGGTCGAGTGTATTCTACGGGAGTCA-TTTTTCTTCACG----TATA-----ACACGCAGAAAAC-CGACCCTTGG-GTC-TCT-TTCTTA-----AA--AA-AAAtttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|13 : TA------------------TA------------------TT-T--TTAC--ACATC-T-TA-------TCGA-T--C-AACAATTTTAAATAGCA--TT-TTAGTTTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTCATGT--ATA-------ACACGCAGAAAAC-TTAGCCTTGG--TCTTTT-TTC--------AA--AA-TAATCCAGTTTTTC------CTaaata
gi|14 : ttaaatgttcaagcatgattcatgtgtattataccttaaagagcaaacatattttttaatccatatgCCAATGATCGGTGTGATCTAGAT---AT-GTTTATGAGTAT-TATACTCGATCA--TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTGCA---CCG----A----GA--AAACCATGATGGCAAAGCACATAAT-------------C-AAAACTA--CG-ATAAACTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTA----TA------GAGTA-NT---CTATTAA--T----A-TT
gi|15 : --ATTTTTTCTACGGGG-TCA-GTTT-CTTCATGT--ATATA------CATGCAGAAAAC-TGACCCCTGG-GTC-TTT-TTCTTCAAATAAA--AA-TAATCCAATTTTTC------TTCA------GCTGGGGATGGGGGGGGGG-GTCAT--T-------------------TATCGAC-GTACATGTAGAAAAATGACCCC--------------------TATTATCCAAC-G---GGGGTCATTATTCTTCTTTAa
gi|16 : CTTTTTA-GGCAGGGGTC--ATTTTTC--ACGGGGGTCT-TTTTTCTTCATGT--A-ACA-----ACGCGCAGAAAAC-TGA-ACCTGGCGTCTTTT-TTCTTC-----AC--AA-TAATCC-GATTTTC------TTCAC-----GCT-----A-------GGG-GTCATTATTCTT-C-------------TTT
gi|16 : ttataGG-GTCTTTT-TTCTTC-----ATGTAA-CAACGCG------CAGAAAACTGA------ACC-----T-------GGC-GTC-T--TTTTT-C-------------TTC--AC-----------AATAAT-------C--------------CGATT-TTCTTC-AC-GCTAGGGGTCATTATTCTTCTTTGCACCGG-ATGTCAATACATGTAACTTCAgcaccggatgtcaatacatgtaacttcaataccttccacttg
gi|17 : ttatactttttaggcaggggtcatttttcacggCAGGGATCACTTTTTCTTC-CGT--A-ATAGTTGCAAATGGAGAAAA--TGACCCCTGG-GTCTTTTTTTCTTC-----AA--AA-CAATCCAGTCATTA------TTCT------ACT-----T-------GCG-GTCA---TTATT-C-------------TTTataccttccacttg
gi|18 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA--G----------------------A----GA--AAAA--TG-TGGCAAAGCACATAATTATTCTAGTAAATC-AAAACTA--CG-ATAA-TTGAAGATC-AGCTCG-TGTGTTCGGCGATTTAAGTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAacaccggcaaaacgtaaattgtgccactactgggatctataccacg
gi|19 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA--G----------------------A----GA--AAAA--TG-TGGCAAAGCACATAATTATTCTAGT-AATC-AAAACTA--CG-ATAAATTGAAGATC-AGCTCG-TGTGTTCGGCGATTTA-GTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAa
gi|2 : TTA---TCCAACGGTCGGTGTGACCTAGCG---AC-GTTTTTG------T-TAAT--------TGA----ATATTTGTTGACTTT--CAC-AAATG-GATAG----ATA--ATGCTCCTCTGTA---CCCATTGA----GA--AAAC--TG---GCAAAGCACAT--TTAA-------TATC-AAGACTATACG-ATAAACTGAAGATC-AATCCA-TGTGTTCTGC-ATTTA-ATTAACTAAT------T-TCTG----TA------GCATA-TT---TAATCAAAGT----A-TTGAGAGTT--CTAATAA---CTAGGATCTTTAAATGTACA-----TGAAAATA-ACGTATTACTATC-AAGTGTA-TTTTG-----------ACTAGTGTACAAG------GTAACACGCTTTACTTTAGCTCATTTCTACACGGTAATCACAACTGGAATGTATTA-----ACCGTTACATAAAA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------ATATAAACTAAATGCTATATGTA------------------TT-TCATTACCTATATT-T-TA---a
gi|2 : agaA------TTTTAAAAATATAGGTAATGAAAT-------ACA-----------TA------------------TA------------------TTATTTTTACATATAT----TA---T---TGA--T--C-AACACTTTTGAATAGCA--TT-TTA-CTTTTTTAAGACAAGGGTC--A-TTTTTCTATGAGGGTCA-TTTTTCTTCATG----TATA-----ACACGCAG--AAC-TGACCACTGG-ATCTTTT-TTCTTTAAAA-AA--AA-AAATCCAATTTTTC------TTCA------GCT-----G-------NNN-NNNNN--NNNNN-NNNNNNNNNNNNATTTTTACC-GGA-----AGTAAAATTA-CCC-C--------------TGGTC---ATTCTAC-G---GGGGTCATTATTCTTCTaaaatataggtaatgaaatacatatattatttttacatatattattgatcaacacttttgaatagcattttacttttttaagacaagggtcatttttctatgagggtcatttttcttcatgtataacacgcagaactgaccactggatcttttttctttaaaaaaaaaaatccaatttttcttcagctgnnnnnnnnnnnnnnnnnnnnnnnnnatttttaccggaagtaaaattacccctggtcattctacgggggtcattattcttct
gi|20 : agattatccaacggtcggtgtgacctagcgacgtttttgttaattgaatatttgttgactttcacaaatggatagataatgctcctctgtacccattgagaaaactggcaaagcacatttaatatcaagactatacgataaactgaagatcaatccatgtgttctgcatttaattaactaatttctgtagcatatttaatcaaagtattgagagttctaataactaggatctttaaatgtacatgaaaataacgtattactatcaagtgtattttgactagtgtacaaggtaacacgctttactttagctcatttctacacggtaatcacaactggaatgtattaaccgttacataaaagtgcaaatgcaactttgtacacatatggaataaagtataaaatataaactaaatgctatatgtatttcattacctatTATCA--TT-TTA-CTCTTTTAATGCAGGGGTC--ATTTTT-CTTCGCGGGTAA-ATATTCTTCATGT--ACA-------ACACACAGAAAAC-TGACCCCTTG-GCCTTTT-TTCTTC-----AA--AA-TAATTAAATTTTTC------TTCA------GCT-----TG------GGG-GTCAT--TTT
gi|22 : GGGGTCA-TTTTTCTTCATGT--ATA-------ACACACAGAAAAC-TGATCCATGG-GTCTTTT-TTCTTC-----AA--AA-TTATCCAGTTTTTC------TT
gi|23 : aCGGTGTGGTCTATTG---AT-GTTTTTGAGTAC-CGTATT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT
gi|25 : AAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACTtttaaatgtac
gi|26 : aA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGTTCCTCTGTA---CCCACTGA----GA--AAAC--TG-TGGCAAAACACATgattta
gi|27 : TCTTCAAACGTTCA-----TGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|28 : C-A---GGGGGCATTATTCTTCTTTACACCGGAATATT-ATACAAGT
gi|29 : cgcAGTAC-TGT------------GA----ATATTTGTTGACTTT--CAC-AA-TA-GATTG----ATAN-ATG
gi|3 : -AAAACAA--GG-ATAAGTCGAAGACC-AGCCCT-TGCGTCTGGC-GCTTA-GTTAA----T------A-TCTG----CA------GCAT--TG---AAATCAAATT----A-TTTAGAGTT--CGAAAAA---CCAGGCTCTTTAAATGTATA-----TGAAATGATAC-TAAC-------AAGCG-AATTTTA-----------ACTAGTGTATA---TG---GTAACACACTTTACAAAAGTCCGTTTCTACACAATGATCACA---G--ATGCATTAGCTTTA---TC------AA--CTGTTACATA----AACGTGCAA--------TTGCA-ACATTAAGTGTAAAAT-------ATAAA--------CTAAATGC-------------TA------------------TT-TCGTTACCAATATCTT-TACATC---TCGTAT--C-AACACTTTTGAATATCA--TT-TTA--CTTTTTAAGGCAGGAGTT--ATT--------------------------ATGTACATGTA-----ACATGCAGAAAACGTG-CCCCTAA-GTCTCCT-TTCTTA-----AA--AATTAATTCAGTTCTTC------TTCAGGAGGGGGTGGGGGT-------GGG-GGCAT--T-------------------TTTCGATGGT-------GGGGAATGA-CCC-C--------------CGGTCATTATTCTAT-G---GGAGTCATCATTTTTTTTT
gi|4 : tgTTTA---CCCAATTATCCGTGTGATATAGCG---AT-ATATTTGAGTAT-TGTACT--------TGA----ATGTCTGTTGACTCT--CGT-AA-TA-GA-----------------------------------------A--AAAC--TG-CGGTAAAGCAC------GT-------AACC-AAGACTG--CA-ATAAATTGAAAATT-AGCCAA-TGCGTTCGGC-ATTTA-TTTAA----CCTCAGAC-TCTGTACATA------GTGTATTT---CA--CAAA----------------T--C-AAAAC---CCAGGCTCTTT-AATGTACA-----TGAAATGA-ATATGTT-TAATT-ACATT-A-TACTA-----------ACAAATGCATtta
gi|5 : tgctaatacctaattttaacatgaaataatctgaatacacaagaagcgttctgcgaaatttagtatataaataaacatgcctggttggtactgatggaatcggtgcattggatcacacggacggcgagaaaccaaggtccttggatcaagtcccaaaaagaggacaatttttacttttaaacaacaaaaagtaaaatataagagagtaaaagaattaccgaaTGTACA-----TGGAATGA-ACATATT-TTGTTGAAATA-A-TAACATGCGTATTTGGACTAGTGTATAA---A---GTAAAACACTCCACAGTAGTATGTTTCTACACGGTGATCACAG-T----TGCATTGT----A---TT------AACTGTGA----CATAAAAG--TGCAAGCTAAACTTT-TAAACATATGGCATGAAGTTGAAAATATAAA--------CTAGATGC-------------TA------------------TT-TTGTTACCTATATC-TATAT--C---TCG--TATC-AACACTTTTAAATATCAATTTATTA-CCTTTGTAAGGCAGGGGCC--ATTTTT-CTACGGGGGTCA-TTTTTC--CATGT--ATA-------ACATGCAGAAA-C-TGACTCCTGG-GTATTTA-TTTTTC-----AA--AA-TAATCCATTTTTTC------TGAA------GCT-----G-------GGGTGTTAT--T-------------------TTTCGAT-GT------CGAAAAATGACCGC-CAGATGAAGAAAACACTGTCATTATTCTACGG---GGGGTCATTACTCTTCTTTACACGGA-GTGTttgaactat
gi|6 : TTA---TCCAGCGATCG-TG-GACCTAGCG---AT-GATTTTG------T-TAAT--------TGA----ATATTTGTTGATTCT--CAC-AA-ttgattttttttaaaaac
gi|7 : ttaaaataattttgtctacaagtatttcttgattaatctagatgtcattaaatctaagtccgttgaaaatgtcttgcaccagggacactatttctacgaaaatattttatcaaaattaattaaataaacttttgtaacaatttcgaacacaattattgctaataagtacttttgatatgaaataataaagattattacacaaggggtgctctacctaatttagtgtatgaataaacatggttggtactgatgaaatcgtaagcatggtacattggaccaaacggacgacgacagagccaaggaatttggataaaatcctccagaaaataacaatgtttacttttaaaacacgaaaagtaatatatgtaaccaattaaaaggataTCTTGTTTTCTTATTCTTGTTTGGGACTTACGGAGA-ATTGAAAAATTCTTGTTCTGTTGATCTTGTCCTTAAACGGTCCAATGATCGGTGT-ATCTAGAGTTAATCGTTTATGAGTATGTATACTCCTTATCATGA----ATATTTGTTGACCTTTGCACGAA-TATTATAA----ATA--ATGCTCCTCTGCA---CCT----A----GA--AACCCATGATGGCAAAA-GCAAAAACAT-------AATCAAAAACTA--CGAATAAACTGAAGATCAAACCCGTTGC-TTC-GC-ATTAT-GTTAA----A------CTTCTA----TAGAAAAGGAGTA-CT---AATTCAAAGT----ACTTGGGAGTTAACTAAAAAAAGTCAAGCTCTTCAAACGTCTAAAAATTGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|8 : GGCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTCTTGAAATC-A-TTTGG-----------ACCAGTTTATGAGG-A-----AACACACTCTACTTAAGTCCGTTTCTACACGGTGATCACAA-T----TGCATTGC----A---TT------AA--GTG-----CA----AA--TGCAA------CTTCGTACACATGTGGAATAAAGT-------ATAAA--------ATA------------------TAAACTAAATGCTATATGTATT-TCATTACCTATATC-TATA---CATATCA--TATC-AACACTTTTAAATAACA--TT-TTA-CCTTTTTAAGGCAGGGGCC--ATTTTTCC-ACGGGGGTTA-TTTTTCT----G---------------ACGCAGAAAAC--GACCCCTGG-TTCGTTT-TCTTTC-----AA--A--TAATCCAATTGTTC------
gi|9 : TTATA---TTCAATGATCGCCGTGACCTAGCG---AT-GTTTTTG------T-TAAC--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAGTTAAATA--ATGCTCCTCTT-ATATCC-----ACTGAGA--AAAC--TG-TGGCAAAGAACAT--TTAA-------TATT-AAGACTA--CG-ATAAATTGAAGATC-AACCCA-TGTATTCGGT-ATTTA-GTTAA----T------C-TCTG----TA------GTGTA-TTTTACAATCAAAGTAATGA-TCGAGAGTT--ATAATAA---C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCGTAAGCATTGTACATTGGATCACACGGATGGCGACAGAGACAAGGAATTTGGAACAAATCCTCCAGAATATTACTGTAACAATTTTTTTTTACTTCAAAAAACTGAATAGTAATATAT
Unaligned ( gi|24 ): ACTACACAAGGGGTGCCTTGCCTAATTTAGTATGCGAATAAACATGGTTGTTACTGATGAAATCGTAAGCATGGTAC
Unaligned ( gi|30 ): TTATTTATTCAAAAGTAGTAATGGCCAATATGAG
Alignments
lowQualScore : 1 11 1 1 3333333 111 22222222 999999999999999999999999999999 11 2222222 11111111111 111111 111 11111 22222222222 33333333 7777777777777777777777777777777 11 22222 1111 111111 1111111 88888888888888888888888888888888888888888888888888 11 555555555555555555555 111 1111111 11111 111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111 11 111 222 4444444444444 222
lowQualScore : 1 5 66 1 33 3 2 1111111 000 777 4 99999999 1 66666666 7777 44 3 3 3 7777 888888888888888888888888888888 55 11 8 4 2 7777777 4 0 55 4 4 66 8 4 55555555555 4 8888 111111 4 777 8888 4 77 1 000 11111 1 4 3 4 5 77 5 0 33333333333 0 99999999 333 1 0 3333333333333333333333333333333 11 33333 4444 99 666666 4 5 8888888 0 66666666666666666666666666666666666666666666666666 33 777777777777777777777 5 5 66 4 4 55 999 0 33 1 0 666 1 7777777 3 2 2 33333 33 2 0 888888 777777 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 9 6 5 000 00 888 111 1 9999999999999 1 111
lowQualScore : . . .. . .. . . ....... ... ... . ........ . ........ .... .. . . . .... .............................. .. .. . . . ....... . . .. . . .. . . ........... . .... ...... . ... .... . .. . ... ..... . . . . . .. . . ........... . ........ ... . . ............................... .. ..... .... .. ...... . . ....... . .................................................. .. ..................... . . .. . . .. ... . .. . . ... . ....... . . . ..... .. . . ...... ...... .......................................................................................... . . . ... .. ... ... . ............. . ...
lowQualScore : 0 5 55 0 55 3 0 7777777 000 888 4 00000000 6 00000000 7777 22 1 1 3 1111 222222222222222222222222222222 55 00 0 6 4 2222222 0 5 55 0 0 33 0 0 11111111111 0 5555 555555 0 000 5555 0 99 4 000 11111 0 4 9 4 6 22 0 8 88888888888 3 00000000 888 0 8 6666666666666666666666666666666 00 33333 2222 22 444444 3 1 6666666 1 44444444444444444444444444444444444444444444444444 00 000000000000000000000 7 3 11 4 4 00 333 8 55 5 4 555 5 0000000 1 9 9 22222 99 9 7 888888 222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 0 7 000 88 777 000 0 0000000000000 0 000
consensus : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTG-A---CC-----A----GA--AAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----A---TT------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------AT---A---A---C-------------TA-------------TTTCGTTACCTATATC-T-TA---C---TCG--T--C-AACACTTTTAAATANCA--TT-TTA-CCTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
Reference ( family-1655 ) : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTG-A---CC-----A----GA--AAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----A---TT------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------AT---A---A---C-------------TA-------------TTTCGTTACCTATATC-T-TA---C---TCG--T--C-AACACTTTTAAATANCA--TT-TTA-CCTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
gi|1 : TCTTGTTTTGT-ATTCA-GTTTTGGACTTTAAAAGAGATTGATGCACTC---T-CCGTTATTTTCGCCTTTTTA---TTCAATGTTCGGTGTCATCTAACG---AT-GTTTTTGCGTAC-TGTACT--------TGA----CTATTTGTTGACTTT--TAC-AA-TA-GATAG----TTA----GCT------------------------A--AAAC--AG-TGGTAAAGCACGTAATCAT-------AATC-AATACTA--CG-ATAAATTGAAGATC-AACCTC-TGTGTTCGGC-ATTTA-CTTAA----T------C-TTTT----TA------GTGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGACTCTTCAAATGTTCA-----TGAAAAGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACCAGTGTATGAGGTACATGTAACACACTTTACTCTAGTGCGTTCCTACACGGTGA-----------ATAC---G-----A-----------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATA--GAATAAAGT-------ATAGA--------AT---A---------------------TA--------------------AACTAAAT----TA---A---T-G--T--T-A------TTAAATAAAA--GT-TTT-CTTTTTTAAGGCAGGAGTC--TTTTTTTCTACGGGAGTCA-TTTTCCTCCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTAATT--TTTTTC-------------TTTCTAC-GTA-----AGAAAAATTACCCCACG-------------CGGTCGTTATTCCAC-G---GTGGTCATTATTCTTCTTTACACCGA-CTGTCC-ATACTTTGAATTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAAAAACATTTTGTTGCA-A-----------TTTTCTATATCTATTGGACT
gi|10 : -ATTGAT-CACTC---GTC-GTTATTTTCGCCTATTCA---TT-AATGTTCGGTGTGATCTAGCG---AC-GTTTT--AGTAC-TGTACT--------TGACTATATATTTGTTGCCTTT--CAC-AA-CA-GATAG----ATACAATGT-------------------A----GATAAAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATGGAAGATT-AACCCC-TTTGTTCAGC-ATTTG-GTTAA----T------C-TCTG----TA------GCGTA-AT---AAATCAAAGC----A-TTGGGAGTT--CTAAAAA---CCATTCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTGataattac
gi|11 : aatagAATAGCA--TT-TCA-CCTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTC---T--ATATA-----ACA-GCAGAAAAC-TGACCCT--G-GT-TTTT-TTCTTC-----AA--A--TAAACCAGTTTTTT------TTaaaagaaccagta
gi|12 : TA-----CA----AA--TGCAA------CTTTGTACACATATAGAATAAAAT-------ACAAACTAGAATGAT---A---T---C-------------TA-------------TTTCATTATCTATATCTT-TA---CATATTGTAT--CAAACACTTTTAAATA-CA--TT-AT--CCTTTTTAAAGCA-GGGTCGAGTGTATTCTACGGGAGTCA-TTTTTCTTCACG----TATA-----ACACGCAGAAAAC-CGACCCTTGG-GTC-TCT-TTCTTA-----AA--AA-AAAtttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|13 : -------------TA-------------TTT--TTAC--ACATC-T-TA-------TCGA-T--C-AACAATTTTAAATAGCA--TT-TTAGTTTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTCATGT--ATA-------ACACGCAGAAAAC-TTAGCCTTGG--TCTTTT-TTC--------AA--AA-TAATCCAGTTTTTC------CTaaata
gi|14 : ttaaatgttcaagcatgattcatgtgtattataccttaaagagcaaacatattttttaatccatatgtaCCAATGATCGGTGTGATCTAGAT---AT-GTTTATGAGTAT-TATACTCGATCA--TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTGCA---CCG----A----GA--AAACCATGATGGCAAAGCACATAAT-------------C-AAAACTA--CG-ATAAACTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTA----TA------GAGTA-NT---CTATTAA--T----A-TT
gi|15 : --ATTTTTTCTACGGGG-TCA-GTTT-CTTCATGT--ATATA------CATGCAGAAAAC-TGACCCCTGG-GTC-TTT-TTCTTCAAATAAA--AA-TAATCCAATTTTTC------TTCA------GCTGGGGATGGGGGGGGGG-GTCA-T--T------------------TATCGAC-GTACATGTAGAAAAATGACCCC--------------------TATTATCCAAC-G---GGGGTCATTATTCTTCTTTAa
gi|16 : CTTTTTA-GGCAGGGGTC--ATTTTTC--ACGGGGGTCT-TTTTTCTTCATGT--A-ACA-----ACGCGCAGAAAAC-TGA-ACCTGGCGTCTTTT-TTCTTC-----AC--AA-TAATCC-GATTTTC------TTCAC-----GCT-----A-------GGG-GTCA-TTATTCTTC-------------TTT
gi|16 : ttataGG-GTCTTTT-TTCTTC-----ATGTAA-CAACGCG------CAGAAAACTGA------ACC-----T-------GGC-GTC--T--TTTTTC-------------TTC--AC-----------AATAAT-------C--------------CGATT-TTCTTC-AC-GCTAGGGGTCATTATTCTTCTTTGCACCGG-ATGT-CAATACATGTAACTTCAgcaccggatgtcaatacatgtaacttcaataccttccacttg
gi|17 : ttatactttttaggcaggggtcatttttcacggCAGGGATCACTTTTTCTTC-CGT--A-ATAGTTGCAAATGGAGAAAA--TGACCCCTGG-GTCTTTTTTTCTTC-----AA--AA-CAATCCAGTCATTA------TTCT------ACT-----T-------GCG-GTCA----TTATTC-------------TTTataccttccacttg
gi|18 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA--G----------------------A----GA--AAAA--TG-TGGCAAAGCACATAATTATTCTAGTAAATC-AAAACTA--CG-ATAA-TTGAAGATC-AGCTCG-TGTGTTCGGCGATTTAAGTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAacaccggcaaaacgtaaattgtgccactactgggatctataccacg
gi|19 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA--G----------------------A----GA--AAAA--TG-TGGCAAAGCACATAATTATTCTAGT-AATC-AAAACTA--CG-ATAAATTGAAGATC-AGCTCG-TGTGTTCGGCGATTTA-GTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAa
gi|2 : TTA---TCCAACGGTCGGTGTGACCTAGCG---AC-GTTTTTG------T-TAAT--------TGA----ATATTTGTTGACTTT--CAC-AAATG-GATAG----ATA--ATGCTCCTCTGTA---CCCATTGA----GA--AAAC--TG---GCAAAGCACAT--TTAA-------TATC-AAGACTATACG-ATAAACTGAAGATC-AATCCA-TGTGTTCTGC-ATTTA-ATTAACTAAT------T-TCTG----TA------GCATA-TT---TAATCAAAGT----A-TTGAGAGTT--CTAATAA---CTAGGATCTTTAAATGTACA-----TGAAAATA-ACGTATTACTATC-AAGTGTA-TTTTG-----------ACTAGTGTACAAG------GTAACACGCTTTACTTTAGCTCATTTCTACACGGTAATCACAACTGGAATGTATTA-----ACCGTTACATAAAA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------ATATAA---A---CTAAATGCTATATGTA-------------TTTCATTACCTATATT-T-TA---a
gi|2 : agaA------TTTTAAAAATATAGGTAATGAAAT-------ACA-----------T---AT--A---T-------------TA-------------TTT--TTACATATAT----TA---T---TGA--T--C-AACACTTTTGAATAGCA--TT-TTA-CTTTTTTAAGACAAGGGTC--A-TTTTTCTATGAGGGTCA-TTTTTCTTCATG----TATA-----ACACGCAG--AAC-TGACCACTGG-ATCTTTT-TTCTTTAAAA-AA--AA-AAATCCAATTTTTC------TTCA------GCT-----G-------NNN-NNNN-N--NNNNNNNNNNNNNNNNNATTTTTACC-GGA-----AGTAAAATTA-CCC-C--------------TGGTC---ATTCTAC-G---GGGGTCATTATTCTTCTaaaatataggtaatgaaatacatatattatttttacatatattattgatcaacacttttgaatagcattttacttttttaagacaagggtcatttttctatgagggtcatttttcttcatgtataacacgcagaactgaccactggatcttttttctttaaaaaaaaaaatccaatttttcttcagctgnnnnnnnnnnnnnnnnnnnnnnnnnatttttaccggaagtaaaattacccctggtcattctacgggggtcattattcttct
gi|20 : agattatccaacggtcggtgtgacctagcgacgtttttgttaattgaatatttgttgactttcacaaatggatagataatgctcctctgtacccattgagaaaactggcaaagcacatttaatatcaagactatacgataaactgaagatcaatccatgtgttctgcatttaattaactaatttctgtagcatatttaatcaaagtattgagagttctaataactaggatctttaaatgtacatgaaaataacgtattactatcaagtgtattttgactagtgtacaaggtaacacgctttactttagctcatttctacacggtaatcacaactggaatgtattaaccgttacataaaagtgcaaatgcaactttgtacacatatggaataaagtataaaatataaactaaatgctatatgtatttcattacctatTATCA--TT-TTA-CTCTTTTAATGCAGGGGTC--ATTTTT-CTTCGCGGGTAA-ATATTCTTCATGT--ACA-------ACACACAGAAAAC-TGACCCCTTG-GCCTTTT-TTCTTC-----AA--AA-TAATTAAATTTTTC------TTCA------GCT-----TG------GGG-GTCA-T--TTT
gi|22 : GGGGTCA-TTTTTCTTCATGT--ATA-------ACACACAGAAAAC-TGATCCATGG-GTCTTTT-TTCTTC-----AA--AA-TTATCCAGTTTTTC------TT
gi|23 : aCGGTGTGGTCTATTG---AT-GTTTTTGAGTAC-CGTATT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT
gi|25 : AAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACTtttaaatgtac
gi|26 : aA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGTTCCTCTGTA---CCCACTGA----GA--AAAC--TG-TGGCAAAACACATgattta
gi|27 : TCTTCAAACGTTCA-----TGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|28 : C-A---GGGGGCATTATTCTTCTTTACACCGGAATAT-T-ATACAAGT
gi|29 : cgcAGTAC-TGT------------GA----ATATTTGTTGACTTT--CAC-AA-TA-GATTG----ATAN-ATG
gi|3 : -AAAACAA--GG-ATAAGTCGAAGACC-AGCCCT-TGCGTCTGGC-GCTTA-GTTAA----T------A-TCTG----CA------GCAT--TG---AAATCAAATT----A-TTTAGAGTT--CGAAAAA---CCAGGCTCTTTAAATGTATA-----TGAAATGATAC-TAAC-------AAGCG-AATTTTA-----------ACTAGTGTATA---TG---GTAACACACTTTACAAAAGTCCGTTTCTACACAATGATCACA---G--ATGCATTAGCTTTA---TC------AA--CTGTTACATA----AACGTGCAA--------TTGCA-ACATTAAGTGTAAAAT-------ATAAA--------CT---A---AATGC-------------TA-------------TTTCGTTACCAATATCTT-TACATC---TCGTAT--C-AACACTTTTGAATATCA--TT-TTA--CTTTTTAAGGCAGGAGTT--ATT--------------------------ATGTACATGTA-----ACATGCAGAAAACGTG-CCCCTAA-GTCTCCT-TTCTTA-----AA--AATTAATTCAGTTCTTC------TTCAGGAGGGGGTGGGGGT-------GGG-GGCA-T--T------------------TTTCGATGGT-------GGGGAATGA-CCC-C--------------CGGTCATTATTCTAT-G---GGAGTCATCATTTTTTTTT
gi|4 : tgTTTA---CCCAATTATCCGTGTGATATAGCG---AT-ATATTTGAGTAT-TGTACT--------TGA----ATGTCTGTTGACTCT--CGT-AA-TA-GA-----------------------------------------A--AAAC--TG-CGGTAAAGCAC------GT-------AACC-AAGACTG--CA-ATAAATTGAAAATT-AGCCAA-TGCGTTCGGC-ATTTA-TTTAA----CCTCAGAC-TCTGTACATA------GTGTATTT---CA--CAAA----------------T--C-AAAAC---CCAGGCTCTTT-AATGTACA-----TGAAATGA-ATATGTT-TAATT-ACATT-A-TACTA-----------ACAAATGCATtta
gi|5 : tgctaatacctaattttaacatgaaataatctgaatacacaagaagcgttctgcgaaatttagtatataaataaacatgcctggttggtactgatggaatcggtgcattggatcacacggacggcgagaaaccaaggtccttggatcaagtcccaaaaagaggacaatttttacttttaaacaacaaaaagtaaaatataagagagtaaaagaattaccgaaTGTACA-----TGGAATGA-ACATATT-TTGTTGAAATA-A-TAACATGCGTATTTGGACTAGTGTATAA---A---GTAAAACACTCCACAGTAGTATGTTTCTACACGGTGATCACAG-T----TGCATTGT----A---TT------AACTGTGA----CATAAAAG--TGCAAGCTAAACTTT-TAAACATATGGCATGAAGTTGAAAATATAAA--------CT---A---GATGC-------------TA-------------TTTTGTTACCTATATC-TATAT--C---TCG--TATC-AACACTTTTAAATATCAATTTATTA-CCTTTGTAAGGCAGGGGCC--ATTTTT-CTACGGGGGTCA-TTTTTC--CATGT--ATA-------ACATGCAGAAA-C-TGACTCCTGG-GTATTTA-TTTTTC-----AA--AA-TAATCCATTTTTTC------TGAA------GCT-----G-------GGGTGTTA-T--T------------------TTTCGAT-GT------CGAAAAATGACCGC-CAGATGAAGAAAACACTGTCATTATTCTACGG---GGGGTCATTACTCTTCTTTACACGGA-GTGT-ttgaactat
gi|6 : TTA---TCCAGCGATCG-TG-GACCTAGCG---AT-GATTTTG------T-TAAT--------TGA----ATATTTGTTGATTCT--CAC-AA-ttgattttttttaaaaac
gi|7 : ttaaaataattttgtctacaagtatttcttgattaatctagatgtcattaaatctaagtccgttgaaaatgtcttgcaccagggacactatttctacgaaaatattttatcaaaattaattaaataaacttttgtaacaatttcgaacacaattattgctaataagtacttttgatatgaaataataaagattattacacaaggggtgctctacctaatttagtgtatgaataaacatggttggtactgatgaaatcgtaagcatggtacattggaccaaacggacgacgacagagccaaggaatttggataaaatcctccagaaaataacaatgtttacttttaaaacacgaaaagtaatatatgtaaccaattaaaaggataTCTTGTTTTCTTATTCTTGTTTGGGACTTACGGAGA-ATTGAAAAATTCTTGTTCTGTTGATCTTGTCCTTAAACGGTCCAATGATCGGTGT-ATCTAGAGTTAATCGTTTATGAGTATGTATACTCCTTATCATGA----ATATTTGTTGACCTTTGCACGAA-TATTATAA----ATA--ATGCTCCTCTGCA---CCT----A----GA--AACCCATGATGGCAAAA-GCAAAAACAT-------AATCAAAAACTA--CGAATAAACTGAAGATCAAACCCGTTGC-TTC-GC-ATTAT-GTTAA----A------CTTCTA----TAGAAAAGGAGTA-CT---AATTCAAAGT----ACTTGGGAGTTAACTAAAAAAAGTCAAGCTCTTCAAACGTCTAAAAATTGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|8 : GGCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTCTTGAAATC-A-TTTGG-----------ACCAGTTTATGAGG-A-----AACACACTCTACTTAAGTCCGTTTCTACACGGTGATCACAA-T----TGCATTGC----A---TT------AA--GTG-----CA----AA--TGCAA------CTTCGTACACATGTGGAATAAAGT-------ATAAA--------AT---ATAAA---C-------------TAAATGCTATATGTATTTCATTACCTATATC-TATA---CATATCA--TATC-AACACTTTTAAATAACA--TT-TTA-CCTTTTTAAGGCAGGGGCC--ATTTTTCC-ACGGGGGTTA-TTTTTCT----G---------------ACGCAGAAAAC--GACCCCTGG-TTCGTTT-TCTTTC-----AA--A--TAATCCAATTGTTC------
gi|9 : TTATA---TTCAATGATCGCCGTGACCTAGCG---AT-GTTTTTG------T-TAAC--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAGTTAAATA--ATGCTCCTCTT-ATATCC-----ACTGAGA--AAAC--TG-TGGCAAAGAACAT--TTAA-------TATT-AAGACTA--CG-ATAAATTGAAGATC-AACCCA-TGTATTCGGT-ATTTA-GTTAA----T------C-TCTG----TA------GTGTA-TTTTACAATCAAAGTAATGA-TCGAGAGTT--ATAATAA---C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCGTAAGCATTGTACATTGGATCACACGGATGGCGACAGAGACAAGGAATTTGGAACAAATCCTCCAGAATATTACTGTAACAATTTTTTTTTACTTCAAAAAACTGAATAGTAATATAT
Unaligned ( gi|24 ): ACTACACAAGGGGTGCCTTGCCTAATTTAGTATGCGAATAAACATGGTTGTTACTGATGAAATCGTAAGCATGGTAC
Unaligned ( gi|30 ): TTATTTATTCAAAAGTAGTAATGGCCAATATGAG
Alignments
lowQualScore : 1 11 1 1 3333333 111 22222222 999999999999999999999999999999 11 2222222 11111111111 111111 111 11111 22222222222 33333333 7777777777777777777777777777777 11 22222 1111 111111 1111111 88888888888888888888888888888888888888888888888888 11 555555555555555555555 111 1111111 11111 111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111 11 111 222 4444444444444 222
lowQualScore : 1 5 66 1 33 3 2 1111111 000 777 4 99999999 1 66666666 7777 44 3 3 3 7777 888888888888888888888888888888 55 11 8 4 2 7777777 4 0 55 4 4 66 8 4 55555555555 4 8888 111111 4 777 8888 4 77 1 000 11111 1 4 3 4 5 77 5 0 33333333333 0 99999999 333 1 0 3333333333333333333333333333333 11 33333 4444 99 666666 4 5 8888888 0 66666666666666666666666666666666666666666666666666 33 777777777777777777777 5 5 66 4 4 55 999 0 33 1 0 666 1 7777777 3 2 2 33333 33 2 0 888888 777777 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 9 6 5 000 00 888 111 1 9999999999999 1 111
lowQualScore : . . .. . .. . . ....... ... ... . ........ . ........ .... .. . . . .... .............................. .. .. . . . ....... . . .. . . .. . . ........... . .... ...... . ... .... . .. . ... ..... . . . . . .. . . ........... . ........ ... . . ............................... .. ..... .... .. ...... . . ....... . .................................................. .. ..................... . . .. . . .. ... . .. . . ... . ....... . . . ..... .. . . ...... ...... .......................................................................................... . . . ... .. ... ... . ............. . ...
lowQualScore : 0 5 55 0 55 3 0 7777777 000 888 4 00000000 6 00000000 7777 22 1 1 3 1111 222222222222222222222222222222 55 00 0 6 4 2222222 0 5 55 0 0 33 0 0 11111111111 0 5555 555555 0 000 5555 0 99 4 000 11111 0 4 9 4 6 22 0 8 88888888888 3 00000000 888 0 8 6666666666666666666666666666666 00 33333 2222 22 444444 3 1 6666666 1 44444444444444444444444444444444444444444444444444 00 000000000000000000000 7 3 11 4 4 00 333 8 55 5 4 555 5 0000000 1 9 9 22222 99 9 7 888888 222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 0 7 000 88 777 000 0 0000000000000 0 000
consensus : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTG-A---CC-----A----GA--AAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----A---TT------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------AT---A---A---C-------------TA-------------TTTCGTTACCTATATC-T-TA---C---TCG--T--C-AACACTTTTAAATANCA--TT-TTA-CCTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
Reference ( family-1655 ) : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTG-A---CC-----A----GA--AAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----A---TT------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------AT---A---A---C-------------TA-------------TTTCGTTACCTATATC-T-TA---C---TCG--T--C-AACACTTTTAAATANCA--TT-TTA-CCTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
gi|1 : TCTTGTTTTGT-ATTCA-GTTTTGGACTTTAAAAGAGATTGATGCACTC---T-CCGTTATTTTCGCCTTTTTA---TTCAATGTTCGGTGTCATCTAACG---AT-GTTTTTGCGTAC-TGTACT--------TGA----CTATTTGTTGACTTT--TAC-AA-TA-GATAG----TTA----GCT------------------------A--AAAC--AG-TGGTAAAGCACGTAATCAT-------AATC-AATACTA--CG-ATAAATTGAAGATC-AACCTC-TGTGTTCGGC-ATTTA-CTTAA----T------C-TTTT----TA------GTGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGACTCTTCAAATGTTCA-----TGAAAAGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACCAGTGTATGAGGTACATGTAACACACTTTACTCTAGTGCGTTCCTACACGGTGA-----------ATAC---G-----A-----------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATA--GAATAAAGT-------ATAGA--------AT---A---------------------TA--------------------AACTAAAT----TA---A---T-G--T--T-A------TTAAATAAAA--GT-TTT-CTTTTTTAAGGCAGGAGTC--TTTTTTTCTACGGGAGTCA-TTTTCCTCCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTAATT--TTTTTC-------------TTTCTAC-GTA-----AGAAAAATTACCCCACG-------------CGGTCGTTATTCCAC-G---GTGGTCATTATTCTTCTTTACACCGA-CTGTCC-ATACTTTGAATTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAAAAACATTTTGTTGCA-A-----------TTTTCTATATCTATTGGACT
gi|10 : -ATTGAT-CACTC---GTC-GTTATTTTCGCCTATTCA---TT-AATGTTCGGTGTGATCTAGCG---AC-GTTTT--AGTAC-TGTACT--------TGACTATATATTTGTTGCCTTT--CAC-AA-CA-GATAG----ATACAATGT-------------------A----GATAAAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATGGAAGATT-AACCCC-TTTGTTCAGC-ATTTG-GTTAA----T------C-TCTG----TA------GCGTA-AT---AAATCAAAGC----A-TTGGGAGTT--CTAAAAA---CCATTCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTGataattac
gi|11 : aatagAATAGCA--TT-TCA-CCTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTC---T--ATATA-----ACA-GCAGAAAAC-TGACCCT--G-GT-TTTT-TTCTTC-----AA--A--TAAACCAGTTTTTT------TTaaaagaaccagta
gi|12 : TA-----CA----AA--TGCAA------CTTTGTACACATATAGAATAAAAT-------ACAAACTAGAATGAT---A---T---C-------------TA-------------TTTCATTATCTATATCTT-TA---CATATTGTAT--CAAACACTTTTAAATA-CA--TT-AT--CCTTTTTAAAGCA-GGGTCGAGTGTATTCTACGGGAGTCA-TTTTTCTTCACG----TATA-----ACACGCAGAAAAC-CGACCCTTGG-GTC-TCT-TTCTTA-----AA--AA-AAAtttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|13 : -------------TA-------------TTT--TTAC--ACATC-T-TA-------TCGA-T--C-AACAATTTTAAATAGCA--TT-TTAGTTTTTTTAAGGCAGGGGTC--ATTTTT-------------------CTTCATGT--ATA-------ACACGCAGAAAAC-TTAGCCTTGG--TCTTTT-TTC--------AA--AA-TAATCCAGTTTTTC------CTaaata
gi|14 : ttaaatgttcaagcatgattcatgtgtattataccttaaagagcaaacatattttttaatccatatgtaCCAATGATCGGTGTGATCTAGAT---AT-GTTTATGAGTAT-TATACTCGATCA--TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTGCA---CCG----A----GA--AAACCATGATGGCAAAGCACATAAT-------------C-AAAACTA--CG-ATAAACTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTA----TA------GAGTA-NT---CTATTAA--T----A-TT
gi|15 : --ATTTTTTCTACGGGG-TCA-GTTT-CTTCATGT--ATATA------CATGCAGAAAAC-TGACCCCTGG-GTC-TTT-TTCTTCAAATAAA--AA-TAATCCAATTTTTC------TTCA------GCTGGGGATGGGGGGGGGG-GTCA-T--T------------------TATCGAC-GTACATGTAGAAAAATGACCCC--------------------TATTATCCAAC-G---GGGGTCATTATTCTTCTTTAa
gi|16 : CTTTTTA-GGCAGGGGTC--ATTTTTC--ACGGGGGTCT-TTTTTCTTCATGT--A-ACA-----ACGCGCAGAAAAC-TGA-ACCTGGCGTCTTTT-TTCTTC-----AC--AA-TAATCC-GATTTTC------TTCAC-----GCT-----A-------GGG-GTCA-TTATTCTTC-------------TTT
gi|16 : ttataGG-GTCTTTT-TTCTTC-----ATGTAA-CAACGCG------CAGAAAACTGA------ACC-----T-------GGC-GTC--T--TTTTTC-------------TTC--AC-----------AATAAT-------C--------------CGATT-TTCTTC-AC-GCTAGGGGTCATTATTCTTCTTTGCACCGG-ATGT-CAATACATGTAACTTCAgcaccggatgtcaatacatgtaacttcaataccttccacttg
gi|17 : ttatactttttaggcaggggtcatttttcacggCAGGGATCACTTTTTCTTC-CGT--A-ATAGTTGCAAATGGAGAAAA--TGACCCCTGG-GTCTTTTTTTCTTC-----AA--AA-CAATCCAGTCATTA------TTCT------ACT-----T-------GCG-GTCA----TTATTC-------------TTTataccttccacttg
gi|18 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA--G----------------------A----GA--AAAA--TG-TGGCAAAGCACATAATTATTCTAGTAAATC-AAAACTA--CG-ATAA-TTGAAGATC-AGCTCG-TGTGTTCGGCGATTTAAGTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAacaccggcaaaacgtaaattgtgccactactgggatctataccacg
gi|19 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA--G----------------------A----GA--AAAA--TG-TGGCAAAGCACATAATTATTCTAGT-AATC-AAAACTA--CG-ATAAATTGAAGATC-AGCTCG-TGTGTTCGGCGATTTA-GTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAa
gi|2 : TTA---TCCAACGGTCGGTGTGACCTAGCG---AC-GTTTTTG------T-TAAT--------TGA----ATATTTGTTGACTTT--CAC-AAATG-GATAG----ATA--ATGCTCCTCTGTA---CCCATTGA----GA--AAAC--TG---GCAAAGCACAT--TTAA-------TATC-AAGACTATACG-ATAAACTGAAGATC-AATCCA-TGTGTTCTGC-ATTTA-ATTAACTAAT------T-TCTG----TA------GCATA-TT---TAATCAAAGT----A-TTGAGAGTT--CTAATAA---CTAGGATCTTTAAATGTACA-----TGAAAATA-ACGTATTACTATC-AAGTGTA-TTTTG-----------ACTAGTGTACAAG------GTAACACGCTTTACTTTAGCTCATTTCTACACGGTAATCACAACTGGAATGTATTA-----ACCGTTACATAAAA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------ATATAA---A---CTAAATGCTATATGTA-------------TTTCATTACCTATATT-T-TA---a
gi|2 : agaA------TTTTAAAAATATAGGTAATGAAAT-------ACA-----------T---AT--A---T-------------TA-------------TTT--TTACATATAT----TA---T---TGA--T--C-AACACTTTTGAATAGCA--TT-TTA-CTTTTTTAAGACAAGGGTC--A-TTTTTCTATGAGGGTCA-TTTTTCTTCATG----TATA-----ACACGCAG--AAC-TGACCACTGG-ATCTTTT-TTCTTTAAAA-AA--AA-AAATCCAATTTTTC------TTCA------GCT-----G-------NNN-NNNN-N--NNNNNNNNNNNNNNNNNATTTTTACC-GGA-----AGTAAAATTA-CCC-C--------------TGGTC---ATTCTAC-G---GGGGTCATTATTCTTCTaaaatataggtaatgaaatacatatattatttttacatatattattgatcaacacttttgaatagcattttacttttttaagacaagggtcatttttctatgagggtcatttttcttcatgtataacacgcagaactgaccactggatcttttttctttaaaaaaaaaaatccaatttttcttcagctgnnnnnnnnnnnnnnnnnnnnnnnnnatttttaccggaagtaaaattacccctggtcattctacgggggtcattattcttct
gi|20 : agattatccaacggtcggtgtgacctagcgacgtttttgttaattgaatatttgttgactttcacaaatggatagataatgctcctctgtacccattgagaaaactggcaaagcacatttaatatcaagactatacgataaactgaagatcaatccatgtgttctgcatttaattaactaatttctgtagcatatttaatcaaagtattgagagttctaataactaggatctttaaatgtacatgaaaataacgtattactatcaagtgtattttgactagtgtacaaggtaacacgctttactttagctcatttctacacggtaatcacaactggaatgtattaaccgttacataaaagtgcaaatgcaactttgtacacatatggaataaagtataaaatataaactaaatgctatatgtatttcattacctatTATCA--TT-TTA-CTCTTTTAATGCAGGGGTC--ATTTTT-CTTCGCGGGTAA-ATATTCTTCATGT--ACA-------ACACACAGAAAAC-TGACCCCTTG-GCCTTTT-TTCTTC-----AA--AA-TAATTAAATTTTTC------TTCA------GCT-----TG------GGG-GTCA-T--TTT
gi|22 : GGGGTCA-TTTTTCTTCATGT--ATA-------ACACACAGAAAAC-TGATCCATGG-GTCTTTT-TTCTTC-----AA--AA-TTATCCAGTTTTTC------TT
gi|23 : aCGGTGTGGTCTATTG---AT-GTTTTTGAGTAC-CGTATT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT
gi|25 : AAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACTtttaaatgtac
gi|26 : aA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGTTCCTCTGTA---CCCACTGA----GA--AAAC--TG-TGGCAAAACACATgattta
gi|27 : TCTTCAAACGTTCA-----TGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|28 : C-A---GGGGGCATTATTCTTCTTTACACCGGAATAT-T-ATACAAGT
gi|29 : cgcAGTAC-TGT------------GA----ATATTTGTTGACTTT--CAC-AA-TA-GATTG----ATAN-ATG
gi|3 : -AAAACAA--GG-ATAAGTCGAAGACC-AGCCCT-TGCGTCTGGC-GCTTA-GTTAA----T------A-TCTG----CA------GCAT--TG---AAATCAAATT----A-TTTAGAGTT--CGAAAAA---CCAGGCTCTTTAAATGTATA-----TGAAATGATAC-TAAC-------AAGCG-AATTTTA-----------ACTAGTGTATA---TG---GTAACACACTTTACAAAAGTCCGTTTCTACACAATGATCACA---G--ATGCATTAGCTTTA---TC------AA--CTGTTACATA----AACGTGCAA--------TTGCA-ACATTAAGTGTAAAAT-------ATAAA--------CT---A---AATGC-------------TA-------------TTTCGTTACCAATATCTT-TACATC---TCGTAT--C-AACACTTTTGAATATCA--TT-TTA--CTTTTTAAGGCAGGAGTT--ATT--------------------------ATGTACATGTA-----ACATGCAGAAAACGTG-CCCCTAA-GTCTCCT-TTCTTA-----AA--AATTAATTCAGTTCTTC------TTCAGGAGGGGGTGGGGGT-------GGG-GGCA-T--T------------------TTTCGATGGT-------GGGGAATGA-CCC-C--------------CGGTCATTATTCTAT-G---GGAGTCATCATTTTTTTTT
gi|4 : tgTTTA---CCCAATTATCCGTGTGATATAGCG---AT-ATATTTGAGTAT-TGTACT--------TGA----ATGTCTGTTGACTCT--CGT-AA-TA-GA-----------------------------------------A--AAAC--TG-CGGTAAAGCAC------GT-------AACC-AAGACTG--CA-ATAAATTGAAAATT-AGCCAA-TGCGTTCGGC-ATTTA-TTTAA----CCTCAGAC-TCTGTACATA------GTGTATTT---CA--CAAA----------------T--C-AAAAC---CCAGGCTCTTT-AATGTACA-----TGAAATGA-ATATGTT-TAATT-ACATT-A-TACTA-----------ACAAATGCATtta
gi|5 : tgctaatacctaattttaacatgaaataatctgaatacacaagaagcgttctgcgaaatttagtatataaataaacatgcctggttggtactgatggaatcggtgcattggatcacacggacggcgagaaaccaaggtccttggatcaagtcccaaaaagaggacaatttttacttttaaacaacaaaaagtaaaatataagagagtaaaagaattaccgaaTGTACA-----TGGAATGA-ACATATT-TTGTTGAAATA-A-TAACATGCGTATTTGGACTAGTGTATAA---A---GTAAAACACTCCACAGTAGTATGTTTCTACACGGTGATCACAG-T----TGCATTGT----A---TT------AACTGTGA----CATAAAAG--TGCAAGCTAAACTTT-TAAACATATGGCATGAAGTTGAAAATATAAA--------CT---A---GATGC-------------TA-------------TTTTGTTACCTATATC-TATAT--C---TCG--TATC-AACACTTTTAAATATCAATTTATTA-CCTTTGTAAGGCAGGGGCC--ATTTTT-CTACGGGGGTCA-TTTTTC--CATGT--ATA-------ACATGCAGAAA-C-TGACTCCTGG-GTATTTA-TTTTTC-----AA--AA-TAATCCATTTTTTC------TGAA------GCT-----G-------GGGTGTTA-T--T------------------TTTCGAT-GT------CGAAAAATGACCGC-CAGATGAAGAAAACACTGTCATTATTCTACGG---GGGGTCATTACTCTTCTTTACACGGA-GTGT-ttgaactat
gi|6 : TTA---TCCAGCGATCG-TG-GACCTAGCG---AT-GATTTTG------T-TAAT--------TGA----ATATTTGTTGATTCT--CAC-AA-ttgattttttttaaaaac
gi|7 : ttaaaataattttgtctacaagtatttcttgattaatctagatgtcattaaatctaagtccgttgaaaatgtcttgcaccagggacactatttctacgaaaatattttatcaaaattaattaaataaacttttgtaacaatttcgaacacaattattgctaataagtacttttgatatgaaataataaagattattacacaaggggtgctctacctaatttagtgtatgaataaacatggttggtactgatgaaatcgtaagcatggtacattggaccaaacggacgacgacagagccaaggaatttggataaaatcctccagaaaataacaatgtttacttttaaaacacgaaaagtaatatatgtaaccaattaaaaggataTCTTGTTTTCTTATTCTTGTTTGGGACTTACGGAGA-ATTGAAAAATTCTTGTTCTGTTGATCTTGTCCTTAAACGGTCCAATGATCGGTGT-ATCTAGAGTTAATCGTTTATGAGTATGTATACTCCTTATCATGA----ATATTTGTTGACCTTTGCACGAA-TATTATAA----ATA--ATGCTCCTCTGCA---CCT----A----GA--AACCCATGATGGCAAAA-GCAAAAACAT-------AATCAAAAACTA--CGAATAAACTGAAGATCAAACCCGTTGC-TTC-GC-ATTAT-GTTAA----A------CTTCTA----TAGAAAAGGAGTA-CT---AATTCAAAGT----ACTTGGGAGTTAACTAAAAAAAGTCAAGCTCTTCAAACGTCTAAAAATTGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|8 : GGCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTCTTGAAATC-A-TTTGG-----------ACCAGTTTATGAGG-A-----AACACACTCTACTTAAGTCCGTTTCTACACGGTGATCACAA-T----TGCATTGC----A---TT------AA--GTG-----CA----AA--TGCAA------CTTCGTACACATGTGGAATAAAGT-------ATAAA--------AT---ATAAA---C-------------TAAATGCTATATGTATTTCATTACCTATATC-TATA---CATATCA--TATC-AACACTTTTAAATAACA--TT-TTA-CCTTTTTAAGGCAGGGGCC--ATTTTTCC-ACGGGGGTTA-TTTTTCT----G---------------ACGCAGAAAAC--GACCCCTGG-TTCGTTT-TCTTTC-----AA--A--TAATCCAATTGTTC------
gi|9 : TTATA---TTCAATGATCGCCGTGACCTAGCG---AT-GTTTTTG------T-TAAC--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAGTTAAATA--ATGCTCCTCTT-ATATCC-----ACTGAGA--AAAC--TG-TGGCAAAGAACAT--TTAA-------TATT-AAGACTA--CG-ATAAATTGAAGATC-AACCCA-TGTATTCGGT-ATTTA-GTTAA----T------C-TCTG----TA------GTGTA-TTTTACAATCAAAGTAATGA-TCGAGAGTT--ATAATAA---C
blockSeqs : C T TT G AC . A TTGTTCT CGG TTA C AGTATGTA C CCTTATCA CTAT TG G A T TTAA ATGCTCCTCTTATATCCACTGA TA CA A A T TCTAGTA A TA A A GT G A CCTCAGA T TACA GAAAAG T TTA AATG C AA T AAG AAAAT A T A A G GT A TGCGTATTTGG AGGA TTT T ACTGGAATGTATTAACCGTTACATAA CT TTACA TAAA CG GCTAAA C T TGAAAAT ATATAAACTAAATGCTATATGTA CA CTTTACATATTGTAT A G AT A G GA TCT CT T TAC T TAGTTGC G C T AAATA GT T AGAAAA GGAGGG GNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTACCGGAAGTAAAATTACCCC A A G CTA AA CA . C CAGTTCCCGAAAT T .
blockSeqs : . . GTC . . . AGTACTG C CGATCA . . . . . . ATGCTCCTCTGTACCCATTGA . CA A A T TCTAGT . . . . C G . CTAAT . . . . . . . . T . . A . G . G A . . AG AAA C GATGCATTAGCTTTATC . A . . . C T . ATATAAACTAAATGCTATATGTA CA CTTTACATCTCGTAT . G . . . . TCT T T T T TA . . . AAAA . . . C GGGGATGGGGGGGGGGGTCATTTATCGACGTACATGTAGAAAAATGACCCC A T . . A T
blockSeqs : . . . AGTATTA A . . . . . . . ATGTTCCTCTGTACCCACTGA . . . A T . . . . . G . . T . . . . . . . . G . . T . T . G G . . TG AGT A GTTGCATTGTATT . . . . . A G . CTAGAATGATATCTA CG CTATACATATCATAT . G . . . . TCT G T T T TA . . . . . . . . GGGGTGTTATTTTTCGATGTCGAAAAATGACCGCCAGATGAAGAAAACA A T . . G
blockSeqs : . . . AGTACCG T . . . . . . . ATGCTCCTCTGCACCGA . . . A T . . . . . G . . T . . . . . . . . T . . T . A . G T . . AA TTA C ATTGCATTGCATT . . . . . A A . CTAAATGCTA TG CTATATCTCGTAT . T . . . . CT T T T T TA . . . . . . . . GGGGGTGGGGGCATTTTTCGATGGTGGGGAATGACCCC . T . .
blockSeqs : . . . AGTACTG C . . . . . . . ATGCTCCTCTGCACCTA . . . A C . . . . . G . . T . . . . . . . . T . . T . A . . A . . . . . . C T . CTAGATGCTA CA CTTATCGAT . T . . . . CT T T T T CA . . . . . . . . TGGCGTCTTTTTTCTTCACAATAATC . . . .
blockSeqs : . . . AGTATTG A . . . . . . . CAATGTA . . . . T . . . . . A . . T . . . . . . . . . . . T . T . . A . . . . T . TATATTA . TATTGAT . T . . . . CC A T T C TA . . . . . . . . . .
blockSeqs : . . T C . . . . . . . GA . . . . . . . . . . T . . T . . . . . . . . T . A . . C . . . A . . . . C T T T T TA . . . . . . . .
blockSeqs : . . T A . . . . . . . GA . . . . . . . . . . A . . A . . . . . . . . A . . . . . . . . . T T T T . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . A . . T . . . . . . . . . T . T T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : ATGCTCCTCTGCACCCATGA********** AG****** ANTGCATTGTATT****************** TACTAAATGCTATATTA********************************* CG CTTTACATATCGTAT****** CT*
originalCons : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA--ATGCTCCTCTG-A---CC-----A----GA--AAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAGGTA---GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAA-TG--ATGCATTG-----A---TT------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAA--------AT---A---A---C-------------TA-------------TTTCGTTACCTATATC-T-TA---C---TCG--T--C-AACACTTTTAAATANCA--TT-TTA-CCTTTTTAAGGCAGGGGTC--ATTTTTTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
finalCons : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATAATGCTCCTCTGCACCCATGA----------GA--AAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAG------GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAANTGCATTGTATT------------------AA--GTG-----CA----AA--TGCAA------CTTTGTACACATATGGAATAAAGT-------ATAAATACTAAATGCTATATTA---------------------------------TTTCGTTACCTATATCTTTACATATCGTAT------C-AACACTTTTAAATANCA--TT-TTA-CCTTTTTAAGGCAGGGGTC--ATTTTTCT-ACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCGTAAGCATTGTACATTGGATCACACGGATGGCGACAGAGACAAGGAATTTGGAACAAATCCTCCAGAATATTACTGTAACAATTTTTTTTTACTTCAAAAAACTGAATAGTAATATAT
Unaligned ( gi|24 ): ACTACACAAGGGGTGCCTTGCCTAATTTAGTATGCGAATAAACATGGTTGTTACTGATGAAATCGTAAGCATGGTAC
Unaligned ( gi|30 ): TTATTTATTCAAAAGTAGTAATGGCCAATATGAG
Alignments
lowQualScore : 1 11 1 1 3333333 111 22222222 8888888888888888888888 11 2222222 11111111111 111111 111 11111 22222222222 222222 55555555555555555555555555555555555 111111 444444444444444444 2222 111 4444444444444444444 11111 11111 333333333333333 1111111111111 11111 111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111 11 111 222 4444444444444 222
lowQualScore : 1 5 66 1 33 3 2 1111111 000 777 4 99999999 1 66666666 7777 44 3 3 3 7777 2222222222222222222222 11 8 9999 7777777 4 0 55 4 4 66 8 4 55555555555 4 8888 111111 4 777 8888 4 77 1 000 11111 1 4 3 4 5 77 5 0 33333333333 0 333333 333 1 8 1 22222222222222222222222222222222222 99 999999 2 3 333333333333333333 6 7 0000 000 1 1 4444444444444444444 44444 1 44444 555 6 4 66 000000000000000 99 3 4 0 33 1 0 0 5555555555555 3 2 2 33333 33 2 0 888888 777777 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 9 6 5 000 00 888 111 1 9999999999999 1 111
lowQualScore : . . .. . .. . . ....... ... ... . ........ . ........ .... .. . . . .... ...................... .. . .... ....... . . .. . . .. . . ........... . .... ...... . ... .... . .. . ... ..... . . . . . .. . . ........... . ...... ... . . . ................................... .. ...... . . .................. . . .... ... . . ................... ..... . ..... ... . . .. ............... .. . . . .. . . . ............. . . . ..... .. . . ...... ...... .......................................................................................... . . . ... .. ... ... . ............. . ...
lowQualScore : 0 5 55 0 55 3 0 7777777 000 888 4 00000000 6 00000000 7777 22 1 1 3 1111 6666666666666666666666 00 0 6666 2222222 0 5 55 0 0 33 0 0 11111111111 0 5555 555555 0 000 5555 0 99 4 000 11111 0 4 9 4 6 22 0 8 88888888888 3 000000 888 0 8 0 00000000000000000000000000000000000 22 222222 5 5 555555555555555555 7 3 9999 000 7 4 3333333333333333333 33333 4 33333 999 9 4 11 888888888888888 55 6 5 8 55 5 3 4 6666666666666 1 9 9 22222 99 9 7 888888 222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 0 7 000 88 777 000 0 0000000000000 0 000
consensus : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA-ATGCTCCTC-TGCACC-----GAGAAAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAG------GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAATTGCATTG----TATT-------------AA--GTG-C-----AAA--TGC------AACTTTGTACACATATGGAATAAAGTAT--A-AA---T----A--CTA-AATGCTATATG-TATTTCGT---TACCTATATCTT-------------------TACA-----TATCGTAT-----C-A-ACACTTTTAAATANC-ATT--TT-------------A-CCTTTTTAAGGCAGGGGTC--ATTT-TTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
Reference ( family-1655 ) : TCTTGTTTTNTTATTCNTGTTTNGGACTTNCGGAGA-ATTGATGCACTC---TTCCGTTATTTTCGCCTTTTTA---TCCAATGATCGGTGTGATCTAGCG---AT-GTTTTTGAGTAC-TGTACT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA-ATGCTCCTC-TGCACCCA-T-GAGAAAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTG----TA------GCGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGGCTCTTTAAATGTACA-----TGAAANGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACTAGTGTATAAG------GTAACACACTTTACTNTAGTNCGTTTCTACACGGTGATCACAANTGCATTG----TATT-------------AA--GTG-C-----AAA--TGC------AACTTTGTACACATATGGAATAAAGTAT--A-AA---T----A--CTA-AATGCTATAT--TATTTCGT---TACCTATATCTT-------------------TACA-----TATCGTAT-----C-A-ACACTTTTAAATANC-ATT--TT-------------A-CCTTTTTAAGGCAGGGGTC--ATTT-TTCTACGGGGGTCA-TTTTTCTTCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTCA-T--TTTTTC-------------TTTCGAC-GTA-----AGAAAAATGACCCC-C--------------CGGTCATTATTCTAC-G---GGGGTCATTATTCTTCTTTACACCGG-ATGT-C-ATACATGTAACTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAGAAACNTTTTGTTGCACAGTTCCCGAAATTTTTCTATNTCTATTGGACT
gi|1 : TCTTGTTTTGT-ATTCA-GTTTTGGACTTTAAAAGAGATTGATGCACTC---T-CCGTTATTTTCGCCTTTTTA---TTCAATGTTCGGTGTCATCTAACG---AT-GTTTTTGCGTAC-TGTACT--------TGA----CTATTTGTTGACTTT--TAC-AA-TA-GATAG----TTA---GCT-------------------AAAAC--AG-TGGTAAAGCACGTAATCAT-------AATC-AATACTA--CG-ATAAATTGAAGATC-AACCTC-TGTGTTCGGC-ATTTA-CTTAA----T------C-TTTT----TA------GTGTA-TT---CAATCAAAGT----A-TTGAGAGTT--CTAAAAA---CCAGACTCTTCAAATGTTCA-----TGAAAAGA-ACATATT-TTGTTGAAATG-A-TACTA-----------ACCAGTGTATGAGGTACATGTAACACACTTTACTCTAGTGCGTTCCTACACGGTGAATACGA-----------------------------AA--GTG-C-----AAA--TGC------AACTTTGTACACATA--GAATAAAGTAT--AGAA---T----A---TA-AA--CTAAAT--TAAT--GT---TA---------T-------------------TAAA-----TA-----------------------AAA-----GTT--TT---------------CTTTTTTAAGGCAGGAGTCT-TTTT-TTCTACGGGAGTCA-TTTTCCTCCATGT--ATATA-----ACACGCAGAAAAC-TGACCCCTGG-GTCTTTT-TTCTTC-----AA--AA-TAATCCAGTTTTTC------TTCA------GCT-----T-------GGG-GTAATT--TTTTTC-------------TTTCTAC-GTA-----AGAAAAATTACCCCACG-------------CGGTCGTTATTCCAC-G---GTGGTCATTATTCTTCTTTACACCGA-CTGTCC-ATACTTTGAATTTCAGAATTACTAAATTTTGATTGAATATTTATATTCTTTCCCCTATCTGAATTTTTCTTCACTTCGGAATTTTGATTATGAAATATCAAGGTGCATTTTTTCCCCGTTGAAAAAACATTTTGTTGCA-A-----------TTTTCTATATCTATTGGACT
gi|10 : -ATTGAT-CACTC---GTC-GTTATTTTCGCCTATTCA---TT-AATGTTCGGTGTGATCTAGCG---AC-GTTTT--AGTAC-TGTACT--------TGACTATATATTTGTTGCCTTT--CAC-AA-CA-GATAG----ATA-------CAA-TGTA-------GATAAAAC--TG-TGGCAAAGCACATAATTAT-------AATC-AAGACTA--CG-ATAAATGGAAGATT-AACCCC-TTTGTTCAGC-ATTTG-GTTAA----T------C-TCTG----TA------GCGTA-AT---AAATCAAAGC----A-TTGGGAGTT--CTAAAAA---CCATTCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTGataattac
gi|11 : aatagAATAGC-ATT--TC-------------A-CCTTTTTAAGGCAGGGGTC--ATTT-TTCT------------------TC---T--ATATA-----ACA-GCAGAAAAC-TGACCCT--G-GT-TTTT-TTCTTC-----AA--A--TAAACCAGTTTTTT------TTaaaagaaccagta
gi|12 : TA-C-----AAA--TGC------AACTTTGTACACATATAGAATAAAATAC--A-A---------A--CTAGAATGATAT-C--TATTTCAT---TATCTATATCTT-------------------TACA-----TATTGTAT-----CAA-ACACTTTTAAATA-C-ATT--AT---------------CCTTTTTAAAGCA-GGGTCGAGTGTATTCTACGGGAGTCA-TTTTTCTTCACG----TATA-----ACACGCAGAAAAC-CGACCCTTGG-GTC-TCT-TTCTTA-----AA--AA-AAAtttcttccgcggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcattattcttcttacaccgaagtttttaaaattacaa
gi|13 : ATAT--TTTTTAATCCATATGTATATTTT-------------------TACACATCTTATCG-AT-----C-A-ACAATTTTAAATAGC-ATT--TT-------------AGTTTTTTTAAGGCAGGGGTC--ATTT-TTCT------------------TCATGT--ATA-------ACACGCAGAAAAC-TTAGCCTTGG--TCTTTT-TTC--------AA--AA-TAATCCAGTTTTTC------CTaaata
gi|14 : ttaaatgttcaagcatgattcatgtgtattataccttaaagagcaaacCCAATGATCGGTGTGATCTAGAT---AT-GTTTATGAGTAT-TATACTCGATCA--TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA-ATGCTCCTC-TGCACC-----GAGAAAACCATGATGGCAAAGCAC------AT-------AATC-AAAACTA--CG-ATAAACTGAAGATC-AACCCG-TGCGTTCGGC-ATTTA-GTTAA----T------C-TCTA----TA------GAGTA-NT---CTATTAA--T----A-TT
gi|15 : TTT-TTCTACGGGG-TCA-GTTT-CTTCATGT--ATATA------CATGCAGAAAAC-TGACCCCTGG-GTC-TTT-TTCTTCAAATAAA--AA-TAATCCAATTTTTC------TTCA------GCTGGGGATGGGGGGGGGG-GTCA-T--T------------------TATCGAC-GTACATGTAGAAAAATGACCCC--------------------TATTATCCAAC-G---GGGGTCATTATTCTTCTTTAa
gi|16 : atCTTTTTA-GGCAGGGGTC--ATTT-TTC-ACGGGGGTCT-TTTTTCTTCATGT--A-ACA-----ACGCGCAGAAAAC-TGA-ACCTGGCGTCTTTT-TTCTTC-----AC--AA-TAATCC-GATTTTC------TTCAC-----GCT-----A-------GGG-GTCA-TTATTCTTC-------------TTT
gi|16 : ttataGG-GTCTTTT-TTCTTC-----ATGTAA-CAACGCG------CAGAAAACTGA------ACC-----T-------GGC-GTC--T--TTTTTC-------------TTC--AC-----------AATAAT-------C--------------CGATT-TTCTTC-AC-GCTAGGGGTCATTATTCTTCTTTGCACCGG-ATGT-CAATACATGTAACTTCAgcaccggatgtcaatacatgtaacttcaataccttccacttg
gi|17 : ttatactttttaggcaggggtcatttttcacggCAGGGATCACTTTTTCTTC-CGT--A-ATAGTTGCAAATGGAGAAAA--TGACCCCTGG-GTCTTTTTTTCTTC-----AA--AA-CAATCCAGTCATTA------TTCT------ACT-----T-------GCG-GTCA----TTATTC-------------TTTataccttccacttg
gi|18 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA----------------------GAGAAAAA--TG-TGGCAAAGCACATAATTATTCTAGTAAATC-AAAACTA--CG-ATAA-TTGAAGATC-AGCTCG-TGTGTTCGGCGATTTAAGTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAacaccggcaaaacgtaaattgtgccactactgggatctataccacg
gi|19 : TGTTGAATTT--CAC-AA-TA-GATAG----ATA----------------------GAGAAAAA--TG-TGGCAAAGCACATAATTATTCTAGT-AATC-AAAACTA--CG-ATAAATTGAAGATC-AGCTCG-TGTGTTCGGCGATTTA-GTTAA----T------C-TCTG----TG------GCGTA-TT---CAATCAAAGT----A-TTAAa
gi|2 : TTA---TCCAACGGTCGGTGTGACCTAGCG---AC-GTTTTTG------T-TAAT--------TGA----ATATTTGTTGACTTT--CAC-AAATG-GATAG----ATA-ATGCTCCTC-TGTACCCA-TTGAGAAAAC--TG---GCAAAGCACAT--TTAA-------TATC-AAGACTATACG-ATAAACTGAAGATC-AATCCA-TGTGTTCTGC-ATTTA-ATTAACTAAT------T-TCTG----TA------GCATA-TT---TAATCAAAGT----A-TTGAGAGTT--CTAATAA---CTAGGATCTTTAAATGTACA-----TGAAAATA-ACGTATTACTATC-AAGTGTA-TTTTG-----------ACTAGTGTACAAG------GTAACACGCTTTACTTTAGCTCATTTCTACACGGTAATCACAACTGGAATG----TATTAACCGTTACATAAAA--GTG-C-----AAA--TGC------AACTTTGTACACATATGGAATAAAGTATA-A-AA---TATAAA--CTA-AATGCTATATG-TATTTCAT---TACCTATATTTTAAAAATATAGGTAATGAAATACA-----TATATTATTTTTAC-ATATATTATTGATCAAC-ACT--TTTGAATAGCATTTTA-CTTTTTTAAGACAAGGGTC--ATTT-TTCTATGAGGGTCA-TTTTTCTTCATG----TATA-----ACACGCAG--AAC-TGACCACTGG-ATCTTTT-TTCTTTAAAA-AA--AA-AAATCCAATTTTTC------TTCA------GCT-----G-------NNN-NNNN-N--NNNNNNNNNNNNNNNNNATTTTTACC-GGA-----AGTAAAATTA-CCC-C--------------TGGTC---ATTCTAC-G---GGGGTCATTATTCTTCTa
gi|20 : agaTATC-ATT--TT-------------A-CTCTTTTAATGCAGGGGTC--ATTT-TTCTTCGCGGGTAA-ATATTCTTCATGT--ACA-------ACACACAGAAAAC-TGACCCCTTG-GCCTTTT-TTCTTC-----AA--AA-TAATTAAATTTTTC------TTCA------GCT-----TG------GGG-GTCA-T--TTT
gi|22 : GGGGTCA-TTTTTCTTCATGT--ATA-------ACACACAGAAAAC-TGATCCATGG-GTCTTTT-TTCTTC-----AA--AA-TTATCCAGTTTTTC------TT
gi|23 : aCGGTGTGGTCTATTG---AT-GTTTTTGAGTAC-CGTATT--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----AT
gi|25 : AAGGTACATTTT---CCCGTTGAAGAAATCTTTTGTTGCACAGTTCCCGAAATTTTTCTATTTCTA---GACTtttaaatgtac
gi|26 : aA----ATATTTGTTGACTTT--CAC-AA-TA-GATAG----ATA-ATGTTCCTC-TGTACCCACT-GAGAAAAC--TG-TGGCAAAACACATgattta
gi|27 : TCTTCAAACGTTCA-----TGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|28 : C-A---GGGGGCATTATTCTTCTTTACACCGGAATAT-T-ATACAAGT
gi|29 : cgcAGTAC-TGT------------GA----ATATTTGTTGACTTT--CAC-AA-TA-GATTG----ATANATG
gi|3 : -AAAACAA--GG-ATAAGTCGAAGACC-AGCCCT-TGCGTCTGGC-GCTTA-GTTAA----T------A-TCTG----CA------GCAT--TG---AAATCAAATT----A-TTTAGAGTT--CGAAAAA---CCAGGCTCTTTAAATGTATA-----TGAAATGATAC-TAAC-------AAGCG-AATTTTA-----------ACTAGTGTATATG------GTAACACACTTTACAAAAGTCCGTTTCTACACAATGATCACAGATGCATTAGCTTTATC-------------AA--CTG-TTACATAAACGTGC------AA--TTGCA-ACATTAAGTGTAAAATAT--A-AA-----------CTA-AATGCTAT-------TTCGT---TACCAATATCTT-------------------TACA-----TCTCGTAT-----C-A-ACACTTTTGAATATC-ATT--TT-------------A--CTTTTTAAGGCAGGAGTT--ATT--------------------------ATGTACATGTA-----ACATGCAGAAAACGTG-CCCCTAA-GTCTCCT-TTCTTA-----AA--AATTAATTCAGTTCTTC------TTCAGGAGGGGGTGGGGGT-------GGG-GGCA-T--T------------------TTTCGATGGT-------GGGGAATGA-CCC-C--------------CGGTCATTATTCTAT-G---GGAGTCATCATTTTTTTTT
gi|4 : tgTTTA---CCCAATTATCCGTGTGATATAGCG---AT-ATATTTGAGTAT-TGTACT--------TGA----ATGTCTGTTGACTCT--CGT-AA-TA-GAAAA----A-----------C-TGC----------------------GGTAAAGCAC------GT-------AACC-AAGACTG--CA-ATAAATTGAAAATT-AGCCAA-TGCGTTCGGC-ATTTA-TTTAA----CCTCAGAC-TCTGTACATA------GTGTATTT---CA--CAAA----------------T--C-AAAAC---CCAGGCTCTTT-AATGTACA-----TGAAATGA-ATATGTT-TAATT-ACATT-A-TACTA-----------ACAAATGCATtta
gi|5 : tgctaatacctaattttaacatgaaataatctgaatacacaagaagcgttctgcgaaatttagtatataaataaacatgcctggttggtactgatggaatcggtgcattggatcacacggacggcgagaaaccaaggtccttggatcaagtcccaaaaagaggacaatttttacttttaaacaacaaaaagtaaaatataagagagtaaaagaattaccgaaTGTACA-----TGGAATGA-ACATATT-TTGTTGAAATA-A-TAACATGCGTATTTGGACTAGTGTATAAA------GTAAAACACTCCACAGTAGTATGTTTCTACACGGTGATCACAGTTGCATTG----TATT-------------AACTGTGACATAA-AAG--TGCAAGCTAAACTTT-TAAACATATGGCATGAAGT-TGAA-AA---T----A---TA-AA--CTAGATGCTATTTTGT---TACCTATATC---------------------TATA-----TCTCGTAT-----C-A-ACACTTTTAAATATCAATTTATT-------------A-CCTTTGTAAGGCAGGGGCC--ATTT-TTCTACGGGGGTCA-TTTTTC--CATG----TATA-----ACATGCAG-AAAC-TGACTCCTGG-GTATTTA-TTTTTC-----AA--AA-TAATCCATTTTTTC------TGAA------GCT-----G-------GGGTGTTA-T--T------------------TTTCGAT-GT------CGAAAAATGACCGC-CAGATGAAGAAAACACTGTCATTATTCTACGG---GGGGTCATTACTCTTCTTTACACGGA-GTGT-ttgaactat
gi|6 : TTA---TCCAGCGATCG-TG-GACCTAGCG---AT-GATTTTG------T-TAAT--------TGA----ATATTTGTTGATTCT--CAC-AA-ttgattttttttaaaaac
gi|7 : ttaaaataattttgtctacaagtatttcttgattaatctagatgtcattaaatctaagtccgttgaaaatgtcttgcaccagggacactatttctacgaaaatattttatcaaaattaattaaataaacttttgtaacaatttcgaacacaattattgctaataagtacttttgatatgaaataataaagattattacacaaggggtgctctacctaatttagtgtatgaataaacatggttggtactgatgaaatcgtaagcatggtacattggaccaaacggacgacgacagagccaaggaatttggataaaatcctccagaaaataacaatgtttacttttaaaacacgaaaagtaatatatgtaaccaattaaaaggataTCTTGTTTTCTTATTCTTGTTTGGGACTTACGGAGA-ATTGAAAAATTCTTGTTCTGTTGATCTTGTCCTTAAACGGTCCAATGATCGGTGT-ATCTAGAGTTAATCGTTTATGAGTATGTATACTCCTTATCATGA----ATATTTGTTGACCTTTGCACGAA-TATTATAA----ATA-ATGCTCCTC-TGCACCT-----AGAAACCCATGATGGCAAAA-GCAAAAACAT-------AATCAAAAACTA--CGAATAAACTGAAGATCAAACCCGTTGC-TTC-GC-ATTAT-GTTAA----A------CTTCTA----TAGAAAAGGAGTA-CT---AATTCAAAGT----ACTTGGGAGTTAACTAAAAAAAGTCAAGCTCTTCAAACGTCTAAAAATTGAATTAA-ACTTATT-TTGTTGAAATA-A-TACTA-----------
gi|8 : GGCTCTTTAAATGTACA-----TGAAAAGA-ACATATT-TTCTTGAAATC-A-TTTGG-----------ACCAGTTTATGAG------GAAACACACTCTACTTAAGTCCGTTTCTACACGGTGATCACAATTGCATTG----CATT-------------AA--GTG-C-----AAA--TGC------AACTTCGTACACATGTGGAATAAAGTAT--A-AAATAT----AAACTA-AATGCTATATG-TATTTCAT---TACCTATATCTA-------------------TACA-----TATCATAT-----C-A-ACACTTTTAAATAAC-ATT--TT-------------A-CCTTTTTAAGGCAGGGGCC--ATTT-TTCCACGGGGGTTA-TTTTTCT----G---------------ACGCAGAAAAC--GACCCCTGG-TTCGTTT-TCTTTC-----AA--A--TAATCCAATTGTTC------
gi|9 : TTATA---TTCAATGATCGCCGTGACCTAGCG---AT-GTTTTTG------T-TAAC--------TGA----ATATTTGTTGACTTT--CAC-AA-TA-GATAGTTAAATA-ATGCTCCTCTTATATCCACT-GAGAAAAC--TG-TGGCAAAGAACAT--TTAA-------TATT-AAGACTA--CG-ATAAATTGAAGATC-AACCCA-TGTATTCGGT-ATTTA-GTTAA----T------C-TCTG----TA------GTGTA-TTTTACAATCAAAGTAATGA-TCGAGAGTT--ATAATAA---C
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCGTAAGCATTGTACATTGGATCACACGGATGGCGACAGAGACAAGGAATTTGGAACAAATCCTCCAGAATATTACTGTAACAATTTTTTTTTACTTCAAAAAACTGAATAGTAATATAT
Unaligned ( gi|24 ): ACTACACAAGGGGTGCCTTGCCTAATTTAGTATGCGAATAAACATGGTTGTTACTGATGAAATCGTAAGCATGGTAC
Unaligned ( gi|30 ): TTATTTATTCAAAAGTAGTAATGGCCAATATGAG