lowQualScore : 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 555555555555555 1 2222222 999999999999999999999999999999999 22222 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 2222222 1 44444 22 6666666666666 2222222222222 4444444444444444444444444444 111111111 11 1
lowQualScore : 6 6 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 4 1 5 555555555555555 8 2 3 2222222 0 444444444444444444444444444444444 33333 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 6666666 6 9 0 33333 1 55 3333333333333 4444444444444 5555555555555555555555555555 88 66 0 666666666 1 3 88 4 6 5
lowQualScore : . . ...................................................................................................................................................................................................................................... . . . . ............... . . . ....... . ................................. ..... ............................................................................................................................... ....... . . . ..... . .. ............. ............. ............................ .. .. . ......... . . .. . . .
lowQualScore : 0 0 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 6 0 6 444444444444444 0 8 5 5555555 7 000000000000000000000000000000000 33333 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3333333 7 0 8 00000 0 77 0000000000000 2222222222222 9999999999999999999999999999 99 11 5 999999999 6 4 00 2 0 3
consensus : TCTGTTAAACGAGA-ACAGGTGTCGANNAACATCGCAGGAAGAGAAAAAGCATCCCCGCATNANCCGTGTTACNCGGNANTGTTTGTGCATTTCCGACCTTCAATGATCATCCGTGTAA-CTTAAAGCAANGAAAGGGACTTTATAT-ATTTT---GTATTTCTC---GAATNT--TAA---A-AAATACTTTCAAG--G--AGTAT-CG----TAAA----ATT-GA------TCTG-----TAAGTTATTTAAATGTAACAGCTGAAAAAATCACCTGACCTCGACTTG-TCTCCATATTTGGT------AATGATTT---CCATA---T-TT--A--ANGA---------TGGTAAAGGGAAATA-----GTCCAAGA---AGGA----CAAA-CTCCAAANT--CA---TTAAAANAA-CACCATCGTATAGTATAGGNAA------ACGTTAT-TATTATNCTNA--TTCAAA-TAA-AA-GGT-AAAAAGT-----AAT---CCAGAAAACATATTTTCC-AACAATTTCAACAAT-CCGCGAAATAGGTCGCGAAGA--T-TTCGTGGNATGTGCG------------CAGACG-----G----CAC--------------CAC-AA--ACCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
Reference ( gi|2 ) : TTTGTTAAACGGGATATAAATGTAG-TTAACATTGTA------AAAATAATA------CATAACCGG-GTCA-T--GAAA-----G--------CGATCTTCA----TC-TCCCTATGAGC--AAACCAAAGAAAGCCAATTTATAT-ATTTTTCTGTATTTCTTTTTGAATTTT-TAA--AA-AAATACTTTTAA------AGTAT-C-----TAAA----A---GA------ACTG-----TAAGTCATTTAAACGTAACAGCTGAAAAAATTGCGCGACCTTGACTTG-TCTCTATATTTGAT------GATGGTTTGAACCATA---TACT--A--ACGA---------TGGTAAAGGGAAATA-----GTCCAAGA---AGGA----CAAA-ATCCAAAAT--CAATTTTAAAAAAAACACCATCGTATGATAAAGGTAA------ACGTTGTATATTATTCTAAA-TTCAAA-TAA-AA-GGTGAAAAAGT-----AAT---CCAGAAGACGCATTTTCC-AGCAATGTCAATATTGCCACGAAATAGGTCAGGAAGAATT-TTCGGGAAATGTGCG------------CAGACA-----G----CAC--------------TAC-AA--ACCGGA------TT-TAACTAGATTGAAACAAAATGTGTCTTTCTAGTTGCAAATAACGAGCAATTGAT
gi|1 : TCTGTTAAACAAGA----GATGTAGATTAACATTGCAGGAAGAAAAAAAAT-------TATAACCCGTGTTA-GCGGAAT-----GTGCATTTCCGACCTTTA----TT-TCTGTATAA-C--AAAGCAAAGAA------TTGATAT--TTTTTTTGTAT--CTTTTGAAATAT----------AAATACCCC--A------AGTAC-G-----TGAA----ATTAGATACGTTATTGACCCTTAAGTTATTTTAAGGAAACAGCT--AAAAATCACGTGACCTTGACTTG-TTTCCTTATTTGGT------AATAATTT---CCATA---TTTG--A--AAGA---------TGGTAAAAGGAAATA-----GTACGAGA---AAAA----TAAA-CTCTAAACG--CA---TTAAGTAAACCATCAT
gi|6 : TGTTAAACGAAA-ACAAG-GTCA-AAAACATCGCA------GAAAAAGCATCCCCGCATTAGCTG-GTTACT--GCAATGTTTG--------CGATCTTCAATGATCATCCTTGT---CTTAAA--AACGAAAGGGACTTTCTATTATTTT---G-ATTTTTCAGTGCATTTTGTAA--CA----TACTTTCAA-------GTATGCAGTAATAAA----ATATGA------TCTC-----GGAGTTATTCACATGTAACGGCTGAAAAA---------------TTTG-TCTCCATATT-GGT------AATGATTT----CATA---T-TT--GGGAAGA---------TGGTATAAGGAAATA-----TTCCAAGA---AGAA----CAAA-CTCTAAACT--TA---TCAAATAAA----CAT------------------------GTTTTGTATTATTCTAAATTTCAAA-taatagaatgaataattattttctttttattgaattgcaagttgatccatatgtcacggcaaaatgggtttgttaattgattcatacacggacattctgcactaaaaataatctaactagattgaaacgtaatgcgtcttcattgctgcaaataacaagcaatggacttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|3 : TATAT-ATGTT---GTATTT-------AATGTG-TAATAAATAAATACTTTCAAGACGACAACAT-T-----TAGATGTTATT-GA------TGTG-----TAAACTGTTTAAATGTAACAGCTGAAAC--TCACCTGACCTTGACTAG-TCTCCATATTTAATTTGAATGATGGC--GAAGGAAAA--TAGTTCA--ATGA---------TGATGAAGGGAAATACAATAGTTCAAGA---CGGG----CAAA---CCATAGTTGCA----TGAAACAAGCA---TCCTATAATATAGAAAAGACTTTAC-TTATCTATTATACTTA--TTCAAAACAA-GA-GGTAAAGAAA------AAT---CCAAAATACG--TTTTCC-AACAATG---------CCGCAAAATAGGTC--GCGGAGTTACTC---ACACGCGGA------------CAGACG-----G----CACGAAAACAACAACAACAC-AACGCCCGGATTTTTTTT-TTATTTGAATGAAGCAAAA--TAACCTCAAAGTTGCAAATTGCAAGTAATg
gi|14 : aTACTTTCAAGTAGT-AGTAT-TGCA--TAAA----AT--GA------CCTG-----TAAGTTATTTAAACGTAAAAGCTG--AAAATC-----ACC---ACTTGTTCTC-ATATTTGGT------AGTGGTTT---CCGTA---Tggctttcaatggaaattaagcagaatatattaattaagtgactgt
gi|7 : aaaaaaccaaacttcattttctttaaactactatgatCTG-----AACGCTATTCAAATGGAACAGTTGAAAAA-TCACCTGATCTCAATTTG-TCTCCATATTTGGT------ACTGATTT---CCATA---TTTG--G--ATGA---------TGGTAAATGGAAAGA-----GTTCAAGA---TG-------AAATATTCTAAAT--C-ATCATAAAAtt
gi|4 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacTTGGT------AATGATTT---CCATAAATTACTTAA--ACGGGTCTAATATTAGTAAAGGGAAATA-----ATCCAAGATTGAAGAAGTTAAAA-ACTCAAAAT---AATTT----------AGCATCATATAATGTAGGT----------GTTATTTACTATACTGA---TTGAA-T---------------GT-----AAA---CCAGA--------TCGCC-AACAATTTCAAAAATACCAGGAAGTAGATCtatctaggtatgcattttttatccagagaacatgttacccaacaaattcaacacatagatcatgaagttcatggaatgtacacaaacagatggcactaaaaaccagatataactagagcagatgacaagcaacggatttcaat
gi|12 : TTTGAACGAT---------------GA---------TGGTAAAGGGAGATAG----GTCTAAGA------A----CAAA-CTCTAAACT--CA----TAAAATAA--ACCATCATTTGGTATAGGTAA------GGGT------------TAA-----AAA-TAACAA-G-------------------------AAAACATATTTTTCAAACAATTTCAACAAAGCTATGAAATAGGtatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaaaatcgaatcctaacttgattgaagcaaactgtgtcttcatagtgtcaaacaacaagcaatggatttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|13 : aTAACATAAACCCC--TGTATAGCAAAGAAAA------ACATAAT---TTATTATA----TCAAA-TAA-AAAGGTTACATAAT-----GAA---CCAGAAAACATATTTTCC-ATCAATTTCAACAATTCCGCGAAATAGGTTGCGAAGA-----TCGTGGAGTATGTG------------CAatacagatattgtggaatgcatacaaccat
gi|8 : ------ACATTATACATTATGCTTA--TTCAAA-TAA-AA-GGTGAAAA
gi|5 : tgtTCAAA-TAA-AA------AAAAGTTACATAATGAACCAGAA--CACATTTTCA-ATCAATTTCAACAATTCCGCGAAATAGATTGCGAAGA--T-TGTGGAGCATGTGCATCCATACGCAGCCAGACG-----G----CAC--------------TAT-AA--ATTGAA------AT-TAACTATTTTGAAACAAAAAGTGTCGTCATATTTGCAAATGTTAAGCAGTGGATtcaaaccaggttgctgagtttgtggaaagtatatattcacagatggacagtaacatgaaaaacattatcttactagattaaaacaaaacgtgtcttcatagttgcaaataacaaacaacagatttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
gi|7 : cataatttgttgtaAT---CCAGAGAACATGTTACCC-AACAAATTCAA------CAC---ATAGATCATGAAG-----TTCATGGAATGTACA------------CAAACA-----GATGGCAC--------------TAA-AA--ACCAGA------TA-TAACTAGAtttaactggtaatggatattggagaaaaacttttttcaaatgattgcgtttctatgcacccccccccctcaaataaaaaccccaatggcttatgtattgatgtattattcactgggtaaaactggtaacttgtttt
gi|15 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacctgaacgctattcaaatggaacagttgaaaaatcacctgatctcaatttgtctccatatttggtactgatttccatatttggatgatggtaaatggaaagagttcaagatgaaatattctaaatcatcataaaatatctaggtatgcattttttTATACG------------CAGATATAGGGG----CAC---------------A--AA--AGCGCT------TC-TAACTTGATTTAAACAAAATGCGTCTTCATTGTTGCAAGTCACAAGCCATgcagatgacaagcaacggatttcaat
gi|9 : aaagcgtatacttagtatacatgtatgGTACA------------CAGACA-----G-----ACG-------------TACTAA--ACTGAA------AG-TAACTAAACTGA---AAAATGCGTCTTCATAATTGAAAATGACAAGTTATGGATgaatttgaaaagaaattac
gi|1 : cacatattttcaattccaactatgtcgagaaatagattgcggattttgtaagatgtgtattcctgtattaTACA------------CGGACATTCT-G----CAC--------------TAA-AA--AT--AA------TC-TAACTAGATTGAAACGTAATGCGTCTTCATTGCTGCAAATAACAAGCAATGGAacaaaatgtgaatgtataaataactcgttcgatatgctttgaaataattgcg
gi|16 : tctgttaaacaagagatgtagattaacattgcaggaagaaaaaaaattataacccgtgttagcggaatgtgcatttccgacctttatttctgtataacaaagcaaagaattgatattttttttgtatcttttgaaatataaataccccaagtacgtgaaattagatacgttattgacccttaagttattttaaggaaacagctaaaaatcacgtgaccttgacttgtttccttatttggtaataatttccatatttgaaagatggtaaaaggaaatagtacgagaaaaataaactctaaacgcattaagtaaaccatcattaatagaatgaataattattttctttttattgaattgcaagttgatccatatgtcacggcaaaatgggtttgttaattgattca------------CAGACG-----G----TGC--------------CAC-AA--ACCGGA------AT-TATCTAGATTGAATCAGAATGTG-AGTTGTAGTTGTGAATGACAActtcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|17 : ------------CAGACG-----G----TGC--------------CAC-AA--ACCGGA------AC-TAACTATATTGAATCAGAATGTG-AGTTGTAGTTGTGAATaaaa
gi|4 : a-AA--ATCGAA------TCCTAACTTGATTGAAGCAAACTGTGTCTTCATAGTGTCAAACAACAAGCAATGGAT
gi|10 : ttggtaatgatttccataaattacttaaacgggtctaatattagtaaagggaaataatccaagattgaagaagttaaaaactcaaaataatttagcatcatataatgtaggtgttatttactatactgattgaatgtaaaccagatcgccaacaatttcaaaaataccaggaagtagatctatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaGAA------TT-CAACTAGAATGAAACTAAATGTGTTTCCATAGTTGCAAATCACAAGCGATGGATttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|8 : taaataaaagcaaaatcaccacacaccatcgaagaaagaatgcttgttttgaatttattttattatggatgttgacggttctcaatcagaacaaaattcattagattaattccactcctgatgtaaaA------TC-TTACTAGATTAAAACAAAACGTGTCTTCATAGTTGCAAATAACAAACAACAGATt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TTTTAAAATCCAAAATGTGTTGCTCAAAGATTACGTCATACAAAGGTGGAAAATGTTAAGTGGTAATGGATATTGGAGAAAAACTTTTTTCAATGATTGCGTTTCTATGCAACCCCCCCCCAATAAAAACCCCAATGGTTTATGTATTGATGTATTCACTGGGTAAAACTGGTAACTTGTTT
Unaligned ( gi|18 ): ATCGGACACTTGGCTTGCGAAGATGGTATGGGCTATATACTGCAGTGTATTCAAACA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333333 11 333333 11 22222 1 6666666666666666666666 66666666666666666666 1 222222 1 333 777777777777777777777777 4444444444444444444444444444444444444444444444444444444444444 1 111111111 111 111 444444444444444444444444444444 1111111 2222222 333 22222222222222222 111111 44444444444444444444444444 333333 1111 111111 6666666666666666666666666666666666 11111 1111111 333333333333333 111111111
lowQualScore : 222222 77 22 777777 77 55555 1 1 5 3333333333333333333333 0 00000000000000000000 5 1 444444 0 111 3 111111111111111111111111 4444444444444444444444444444444444444444444444444444444444444 6 2 3 5 111111111 000 000 666666666666666666666666666666 1 5555555 9999 3 2 8888 0000000 1 000 2 99 1 88888888888888888 0 222222 2 5 66666666666666666666666666 33 5 2 000000 0 3 9999 0 66 1 222222 6666666666666666666666666666666666 11111 3333333 333333333333333 77 55 0 333333333 2 0 1
lowQualScore : ...... .. .. ...... .. ..... . . . ...................... . .................... . . ...... . ... . ........................ ............................................................. . . . . ......... ... ... .............................. . ....... .... . . .... ....... . ... . .. . ................. . ...... . . .......................... .. . . ...... . . .... . .. . ...... .................................. ..... ....... ............... .. .. . ......... . . .
lowQualScore : 555555 55 00 000000 55 00000 0 0 5 5555555555555555555555 7 77777777777777777777 0 0 777777 0 222 2 555555555555555555555555 3333333333333333333333333333333333333333333333333333333333333 7 8 2 5 222222222 000 000 444444444444444444444444444444 0 9999999 7777 0 7 9999 3333333 0 999 2 22 0 00000000000000000 1 444444 5 7 55555555555555555555555555 77 0 4 666666 1 9 4444 4 11 0 888888 2222222222222222222222222222222222 11111 0000000 000000000000000 77 00 8 444444444 5 5 0
consensus : TCTGTTAAACGAGAACAGGTGTNGANNAACATCGCAGGAAGAAAAAAAGCATCCCCGCATNANCCGTGTTACNCGGNAATGTTTGTGCATTTCCGATCTTCA-T--TC-TCCNTATGA-C--AAA-CAAAGAAAG--A-TTTATAT-ATTTTTC-GTATTTTTT--TGAA-TNT----T--AAA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA---------------T-TTG-AATGATGGTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACT--CA---T--TAAAATAA---ACCATCGT--ATAGTATAGGTAA------ACGTTA-T-T-ATTATNCTTA-TTCAAA-TAAAAGG--T-AAAAAGT-----AAT---CCAGAAAACACATTTTCC-AACAATTTCAAC-AA-T-CCGCGAAATAGGTCGCGAAGA--TTTCGTG--GAA------TGTG----------------C----G------------CAGAC-----GG-------CAC--------------TAC-AA--ACCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
Reference ( family-1653 ) : TCTGTTAAACGAGAACAGGTGTCGANNAACATCGCAGGAAGAGAAAAAGCATCCCCGCATNANCCGTGTTACNCGGNANTGTTTGTGCATTTCCGACCTTCAATGATCATCCGTGTAA-CTTAAAGCAANGAAAGGGACTTTATAT-ATTTT---GTATTTCTC---GAA-TNT----T--AAA-AAATACTTTCAAG---G----A----GTATCG--TAAA----AT----------------T------------G-ATCTGTAAGTTATTTAAATGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA---------------T-TT--AANGATGGTAAAGGGAAATA-----G-TCCAAGA-AGGACAAACTCCAAANT--CA---T--TAAAANAA--CACCATCGT--ATAGTATAGGNAA------ACGTTA-T-T-ATTATNCTNA-TTCAAA-TAAAAGG--T-AAAAAGT-----AAT---CCAGAAAACATATTTTCC-AACAATTTCAAC-AA-T-CCGCGAAATAGGTCGCGAAGA--TTTCGTG--GNA------TGTG----------------C----G------------CAGAC-----GG-------CAC--------------CAC-AA--ACCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
gi|1 : TCTGTTAAACAAGA---GATGTAGATTAACATTGCAGGAAGAAAAAAA--ATT-----ATAACCCGTGTTA-GCGGAA-----TGTGCATTTCCGACCTTTATT-----TCTGTATAA-C--AAAGCAAAGAA------TTGATAT-TTTTTTT-GTATCTTTT---GAAATAT-----------AAATACCC-CAAG--------------TA-CG--TGAA----AT----------------TAGATACGTTATTG-ACCCTTAAGTTATTTTAAGGAAACAGCT--AAAAATCACGTGACCTTGACTTGTTTCCTTATTTGGT---AATAATTT---CCA-------TA---------------T-TTG-AAAGATGGTAAAAGGAAATA-----G-TACGAGA-AAAATAAACTCTAAACG--CA---T--T-AAGTAA---ACCATCATTAATAGAATGAATAA---------TTA-T-T--TTCTTTTTA-TTGAA
gi|1 : G-------CAC--------------TAA-AA--AT--AA------TC-TAACTAGATTGAAACGTAATGCGTCTTCATTGCTGCAAATAACAAGCAATGGAttgcaagttgatccatatgtcacggcaaaatgggtttgttaattgattcatacacggacattctgcactaaaaataatctaactagattgaaacgtaatgcgtcttcattgctgcaaataacaagcaatggacttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|10 : tctgttaaacaagagatgtagattaacattgcaggaagaaaaaaaattataacccgtgttagcggaatgtgcatttccgacctttatttctgtataacaaagcaaagaattgatattttttttgtatcttttgaaatataaataccccaagtacgtgaaattagatacgttattgacccttaagttattttaaggaaacagctaaaaatcacgtgaccttgacttgtttccttatttggtaataatttccatatttgaaagatggtaaaaggaaatagtacgagaaaaataaactctaaacgcattaagtaaaccatcattaatagaatgaataattattttctttttattgaattgcaagttgatccatatgtcacggcaaaatgggtttgttaattgattcatacacggacattctGAA------TT-CAACTAGAATGAAACTAAATGTGTTTCCATAGTTGCAAATCACAAGCGATGGATcttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|12 : taaataaaagcaaaatcaccacacaccatcgaagaaagaatgcttgttttgaatttattttattatggatgttgacggttctcaatcagaacaaaattcattagattaattccactcctgatgtaaaATGATGGTAAAGGGAGATA-----GGTCTAAGA-A---CAAACTCTAAACT--CA------TAAAATAA---ACCATCAT--TTGGTATAGGTAA------GGGTTA-----A-------------AAA-TAA--------------------------CAAGAAAACATATTTTTCAAACAATTTCAACAAA-G-CTATGAAATAGGATAC--AGA--TATTGTG--GAA------TGt
gi|13 : atttgaacg--TAACATAA---ACCCCTGT--ATAGCAAAGAAAA------ACATAA-T-TTATTATA------TCAAA-TAAAAAGGTT-ACATAAT-----GAA---CCAGAAAACATATTTTCC-ATCAATTTCAAC-AATT-CCGCGAAATAGGTTGCGAAGA----TCGTG--GAG------TATG----------------T----G------------CAcatacaaccat
gi|14 : TACTTTCAAGTA-GT---A----GTATTGCATAAA----AT-----------------------------G-ACCTGTAAGTTATTTAAACGTAAAAGCTG--AAAATCACC--------ACTTGTTCTCATATTTGGT---AGTGGTTT---CCG-------TA---------------T-TT--
gi|15 : aaaaaaccaaacttcattttctttaaactactatgat--GTA------TGTATA--------------C----G------------CAGATATAGGGG-------CAC---------------A--AA--AGCGCT------TC-TAACTTGATTTAAACAAAATGCGTCTTCATTGTTGCAAGTCACAAGCCATGAAT
gi|16 : aaagcgtatacttagtatacat------------CAGAC-----GG-------TGC--------------CAC-AA--ACCGGA------AT-TATCTAGATTGAATCAGAATGTGAGTT-GTAGTTGTGAATGACAAttgaaaagaaattac
gi|17 : ------------CAGAC-----GG-------TGC--------------CAC-AA--ACCGGA------AC-TAACTATATTGAATCAGAATGTGAGTT-GTAGTTGTGAATaaaa
gi|2 : aCGATCTTCA----TC-TCCCTATGAGC--AAACCAAAGAAAGCCAATTTATAT-ATTTTTCTGTATTTCTTTTTGAA-TTT----TTAAAA-AAATACTTTTAA---------A----GTATC---TAAA----A------------------------------G-AACTGTAAGTCATTTAAACGTAACAGCTGAAAAAATTGCGCGACCTTGACTTGTCTCTATATTTGAT---GATGGTTTGAACCA-------TA---------------TACT--AACGATGGTAAAGGGAAATA-----G-TCCAAGA-AGGACAAAATCCAAAAT--CAATTT--TAAAAAAAA-CACCATCGT--ATGATAAAGGTAA------ACGTTG-TAT-ATTATTCTAAATTCAAA-TAAAAGG--TGAAAAAGT-----AAT---CCAGAAGACGCATTTTCC-AGCAATGTCAAT-AT-TGCCACGAAATAGGTCAGGAAGAATTTTCGGG--AAA------TGTG----------------C----G------------CAGAC-----AG-------CAC--------------TAC-AA--ACCGGA------TT-TAACTAGATTGAAACAAAATGTGTCTTTCTAGTTGCAAATAACGAGCAATTGAT
gi|3 : tttgttaaacgggatataaatgtagttaacattgtaaaaataatacataaccgggtcatgaaagTATAT-ATGTT---GTATTT-------AA-TGTGTAAT--AAATAAATACTTTCAAG---ACGACA----ACATT---TAGATGTTAT----------------T------------G-ATGTGTAAACTGTTTAAATGTAACAGCTGAAAC--TCACCTGACCTTGACTAGTCTCCATATTTAATTTGAATGATGG---CGAAGGAAAATAG--------------T-TC--AATGATGATGAAGGGAAATACAATAG-TTCAAGA-CGGGCAAAC--CATAGTTGCA---T---GAAACAA--G--CATCCT--ATAATATAGAAAAGACTTTAC-TTA-TCT-ATTATACTTA-TTCAAAACAAGAGG--T-AAAGAAA-----AAT---CCA--AAATACGTTTTCC-AACAATG-----------CCGCAAAATAGGTCGCGGAG---TTAC-TC--ACA------CGCG----------------G----A------------CAGAC-----GG-------CACGAAAACAACAACAACAC-AACGCCCGGATTTTTTTT-TTATTTGAATGAAGCAAAATAA--CCTCAAAGTTGCAAATTGCAAGTAATGG
gi|4 : aTTGGT---AATGATTT---CCA-------TAAATTACTTAAACGGGT-CT--AATATTAGTAAAGGGAAATA-----A-TCCAAGATTGAAGAAGTTAAAAACT--C--------AAAATAATTTAGCATCAT--ATAATGTAGGT----------GTTATT-T-ACTATACTGA-TT-GAA-T-----G--T-AAA---------------CCAGA--------TCGCC-AACAATTTCAAA-AA-TACCAGGAAGTAGATCctttcaatggaaattaagcagaatatattaattaagtgactgt
gi|4 : -AA--ATCGAA------TCCTAACTTGATTGAAGCAAACTGTGTCTTCATAGTGTCAAACAACAAGCAATGGATtatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaaaatcgaatcctaacttgattgaagcaaactgtgtcttcatagtgtcaaacaacaagcaatggatttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|5 : ttggtaatgatttccataaattacttaaacgggtctaatattagtaaagggaaataatccaagattgaagaagttaaaaactcaaaataatttagcatcatataatgtaggtgttatttactatactgattgaatgtaaaccagatcgccaacaatttcaaaaataccaggaagtagatctatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaTCAAA-TAAAA-------AAAAGTTACATAATGAACCAGAA--CACATTTTCA-ATCAATTTCAAC-AA-TTCCGCGAAATAGATTGCGAAGA--TT--GTGGAGCA------TGTG----------------C----ATCCATACGCAGCCAGAC-----GG-------CAC--------------TAT-AA--ATTGAA------AT-TAACTATTTTGAAACAAAAAGTGTCGTCATATTTGCAAATGTTAAGCAGTGGATttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|6 : cataatttgttgtaTGTTAAACGAAAACAAG-GTC-AAAAACATCGCAG------AAAAAGCATCCCCGCATTAGCTG-GTTACT--GCAATGTTTG--------CGATCTTCAATGATCATCCTTGT---CTTAAA--AACGAAAGGGACTTTCTATTATTTT---G-ATTTTTCAGTGCA-TTT----T--GTA-ACATACTTTCAAGTATGC---A----GTA--A--TAAA----ATA---------------T------------G-ATCTCGGAGTTATTCACATGTAACGGCTGAAAA---------------ATTTGTCTCCATA-TTGGT---AATGATTT----CA-------TA---------------T-TTGGGAAGATGGTATAAGGAAATA-----T-TCCAAGA-AGAACAAACTCTAAACT--TA---T--CAAATAAA--CAtttaactggtaatggatattggagaaaaacttttttcaaatgattgcgtttctatgcacccccccccctcaaataaaaaccccaatggcttatgtattgatgtattattcactgggtaaaactggtaacttgtttt
gi|7 : -AAATACTTTCAGA---T----ACCAGGTAT-G--TAAA----ATATGGACATTAGTTACAT------------GTACCTGAACGCTATTCAAATGGAACAGTTGAAAA-ATCACCTGATCTCAATTTGTCTCCATATTTGGT---ACTGATTT---CCA-------TA---------------T-TTG-GATGATGGTAAATGGAAAGA-----G-TTCAAGA-TGAA-ATATTCTAAA-T--CA---TCATAAAATAtgttttgtattattctaaatttcaaag
gi|7 : tatAT---CCAGAGAACATGTTACCC-AACAAATTCAAC-A----C------ATAGATCATGAAG----TTCATG--GAA------TGTA----------------CACAAA------------CAGAT-----GG-------CAC--------------TAA-AA--ACCAGA------TA-TAACTAGAtctaggtatgcattttttatccagagaacatgttacccaacaaattcaacacatagatcatgaagttcatggaatgtacacaaacagatggcactaaaaaccagatataactagagcagatgacaagcaacggatttcaat
gi|8 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacctgaacgctattcaaatggaacagttgaaaaatcacctgatctcaatttgtctccatatttggtactgatttccatatttggatgatggtaaatggaaagagttcaagatgaaatattctaaatcatcataaaatatctaggtatgcatttttt------ACATTA-TAC-ATTATGCTTA-TTCAAA-TAAAAGG--T-GAAAATC-----AAA---CCAGgcagatgacaagcaacggatttcaat
gi|8 : tgtCAAACCAGGTTGCTGAG----TTTGTG--GAAAGTATATATT----------------C----A------------CAGAT-----GGACAGTAACAT--------------GAA-AA--ACATTA------TC-TTACTAGATTAAAACAAAACGTGTCTTCATAGTTGCAAATAACAAACAACAGATgttgctgagtttgtggaaagtatatattcacagatggacagtaacatgaaaaacattatcttactagattaaaacaaaacgtgtcttcatagttgcaaataacaaacaacagatttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
gi|9 : tgtacattatacattatgcttattcaaataaaaggtgaaaatACATATTTTC-----AATTCCAAC-TA-TGTCGAGAAATAGATTGCG--GA--TTTTGTA--AGA------TGTGTATTCCTGTATTAGTAC----A------------CAGAC-----AG--------ACG-------------TACTAA--ACTGAA------AG-TAACTAAACTGAAA---AATGCGTCTTCATAATTGAAAATGACAAGTTATGGATttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAAAATCCAAAATGTGTTGCTCAAAGATTACGTCATACAAAGGTGGAAAATGTTAAGTGGTAATGGATATTGGAGAAAAACTTTTTTCAATGATTGCGTTTCTATGCAACCCCCCCCCAATAAAAACCCCAATGGTTTATGTATTGATGTATTCACTGGGTAAAACTGGTAACTTGTTT
Unaligned ( gi|18 ): ATCGGACACTTGGCTTGCGAAGATGGTATGGGCTATATACTGCAGTGTATTCAAACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 3333333 11111 999999999999999999999999999999999999999999999999999999999 11 11 1 111 33333 1 111 44444444444444444444444444 222222222222222222222222222222222222222222222222222222222222 1 111111111 111 111 1111111 11111 1111 222222222 1111111 22222222 111 22222222222222222 111111 666666666666666666666666666666 3333333 2222222 111111 444444444444444444444444444444 11111 1111111 222222222222222 111111111
lowQualScore : 2222222 77777 0 333333333333333333333333333333333333333333333333333333333 99 33 3 3 666 6 44444 3 0 000 11 22222222222222222222222222 999999999999999999999999999999999999999999999999999999999999 6 2 3 5 111111111 000 000 8888888 22222 66 6666 222222222 5555555 77 3 3 44444444 000 77 2 99 88888888888888888 0 222222 2 999999999999999999999999999999 2 0 2 5555 1111111 1111 3 3333333 66 222222 888888888888888888888888888888 88888 1111111 666666666666666 88 55 3 0 333333333 2 0 1
lowQualScore : ....... ..... . ......................................................... .. .. . . ... . ..... . . ... .. .......................... ............................................................ . . . . ......... ... ... ....... ..... .. .... ......... ....... .. . . ........ ... .. . .. ................. . ...... . .............................. . . . .... ....... .... . ....... .. ...... .............................. ..... ....... ............... .. .. . . ......... . . .
lowQualScore : 0000000 00000 7 777777777777777777777777777777777777777777777777777777777 00 00 7 3 777 7 00000 2 0 222 66 55555555555555555555555555 777777777777777777777777777777777777777777777777777777777777 7 2 2 5 222222222 000 000 6666666 55555 99 0000 999999999 9999999 66 0 0 66666666 000 99 2 22 00000000000000000 1 444444 5 777777777777777777777777777777 0 1 7 7777 4444444 2222 9 5555555 99 888888 888888888888888888888888888888 55555 8888888 777777777777777 77 00 6 8 444444444 5 5 0
consensus : TCTGTTAAACGAGA-ACAAATGTAGATTAACATCGCAG-----AAAAAAGCATC----CATAA-CCG-GTTAC---GAAA----TGCGCATCTCCGATCTTCATCCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT--GAA---CGA---------TGGTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGT--ATAGTATAGGTAA------ACGTTA-T-T-ATTATNCTTA-TTCAAA-TAAAA-G--T-AAAAAGT-----AAT---CCAGAAAACACATTTTCC-AACAATTTCAAC-AA-T-CCGCGAAATAGGTCGCGAAGA--TT--TCGTGGA--A------TGTG----------------CG------------CAGAC-----GG-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
Reference ( family-1653 ) : TCTGTTAAACGAGA-ACAGGTGTNGANNAACATCGCAGGAAGAAAAAAAGCATCCCCGCATNANCCGTGTTACNCGGNAATGTTTGTGCATTTCCGATCTTCATTCTCCNTATGA-CAAA-C-AAAGAAAG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--AAA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT--GAA---TGA---------TGGTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGT--ATAGTATAGGTAA------ACGTTA-T-T-ATTATNCTTA-TTCAAA-TAAAAGG--T-AAAAAGT-----AAT---CCAGAAAACACATTTTCC-AACAATTTCAAC-AA-T-CCGCGAAATAGGTCGCGAAGA--TT--TCGTGGA--A------TGTG----------------CG------------CAGAC-----GG-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
gi|1 : TCTGTTAAACAAGA----GATGTAGATTAACATTGCAGGAAGAAAAAAA--ATT-----ATAACCCGTGTTA-GCGGAA-----TGTGCATTTCCGACCTTTATT-TCTGTATAA-CAAAGC-AAAGAA------TTGATATTTT-TTTT-GTATCT--TTT--GAAA-TAT-----------AAATACCC-CAAG--------------TA-CG--TGAA----AT----------------TAGATACGTTATTG-ACCCTTAAGTTATTTTAAGGAAACAGCT--AAAAATCACGTGACCTTGACTTGTTTCCTTATTTGGT---AATAATTT---CCA-------TA-----TTT--GAA---AGA---------TGGTAAAAGGAAATA-----G-TACGAGA-AAAATAAACTCTAAACGCA---T--T-AAGTAA---AC--CATCATTAATAGAATGAATAA---------TTA-T-T--TTCTTTTTA-TTGAA
gi|1 : G-------CAC--------------TAA-AA--A-T--AA------TC-TAACTAGATTGAAACGTAATGCGTCTTCATTGCTGCAAATAACAAGCAATGGAttgcaagttgatccatatgtcacggcaaaatgggtttgttaattgattcatacacggacattctgcactaaaaataatctaactagattgaaacgtaatgcgtcttcattgctgcaaataacaagcaatggacttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|10 : tctgttaaacaagagatgtagattaacattgcaggaagaaaaaaaattataacccgtgttagcggaatgtgcatttccgacctttatttctgtataacaaagcaaagaattgatattttttttgtatcttttgaaatataaataccccaagtacgtgaaattagatacgttattgacccttaagttattttaaggaaacagctaaaaatcacgtgaccttgacttgtttccttatttggtaataatttccatatttgaaagatggtaaaaggaaatagtacgagaaaaataaactctaaacgcattaagtaaaccatcattaatagaatgaataattattttctttttattgaattgcaagttgatccatatgtcacggcaaaatgggtttgttaattgattcatacacggacattctGAA------TT-CAACTAGAATGAAACTAAATGTGTTTCCATAGTTGCAAATCACAAGCGATGGATcttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|12 : taaataaaagcaaaatcaccacacaccatcgaagaaagaatgcttgttttgaatttattttattatggatgttgacggttctcaatcagaacaaaattcattagattaattccactcctgatgtaaaA-----TTT--GAACGATGA---------TGGTAAAGGGAGATA-----GGTCTAAGA-A---CAAACTCTAAACTCA---T---AAAATAA---AC--CATCAT--TTGGTATAGGTAA------GGGTTA-----A-------------AAA-TAA--------------------------CAAGAAAACATATTTTTCAAACAATTTCAACAAA-G-CTATGAAATAGGATAC--AGA--TA--TTGTGGA--A------TGt
gi|13 : --TAACATAA---AC--CCCTGT--ATAGCAAAGAAAA------ACATAA-T-TTATTATA------TCAAA-TAAAAAGGTT-ACATAAT-----GAA---CCAGAAAACATATTTTCC-ATCAATTTCAAC-AATT-CCGCGAAATAGGTTGCGAAGA------TCGTGGA--G------TATG----------------TG------------CAcatacaaccat
gi|14 : TTC-AT-TTT--CTT--TAAACTAC----T--ATG-AT-TACTTTCAAGTA-GT---A----GTATTGCATAAA----AT-----------------------------G-ACCTGTAAGTTATTTAAACGTAAAAGCTG--AAAATCACC--------ACTTGTTCTCATATTTGGT---AGTGGTTT---CCG-------TA-----TTT--
gi|15 : aaaaaaccaaac------TATA----------------CG------------CAGATATAGGGG-------CAC---------------A--AA--A-GCGCT------TC-TAACTTGATTTAAACAAAATGCGTCTTCATTGTTGCAAGTCACAAGCCATGAAT
gi|16 : aaagcgtatacttagtatacatgtatg------------CAGAC-----GG-------TGC--------------CAC-AA--A-CCGGA------AT-TATCTAGATTGAATCAGAATGTGAGTT-GTAGTTGTGAATGACAAttgaaaagaaattac
gi|17 : ------------CAGAC-----GG-------TGC--------------CAC-AA--A-CCGGA------AC-TAACTATATTGAATCAGAATGTGAGTT-GTAGTTGTGAATaaaa
gi|2 : aTTTGTTAAACGGGATATAAATGTAG-TTAACATTGTA------AAAATAATA------CATAA-CCGGGTCAT---GAAA-------GC------GATCTTCAT-CTCCCTATGAGCAAA-CCAAAGAAAGCCAATTTATATATT-TTTCTGTATTTCTTTT--TGAA-TTT----TTAAAA-AAATACTTTTAA---------A----GTATC---TAAA----A------------------------------G-AACTGTAAGTCATTTAAACGTAACAGCTGAAAAAATTGCGCGACCTTGACTTGTCTCTATATTTGAT---GATGGTTTGAACCA-------TA-----TAC--TAA---CGA---------TGGTAAAGGGAAATA-----G-TCCAAGA-AGGACAAAATCCAAAATCAATTT--TAAAAAAA---ACACCATCGT--ATGATAAAGGTAA------ACGTTG-TAT-ATTATTCTAAATTCAAA-TAAAAGG--TGAAAAAGT-----AAT---CCAGAAGACGCATTTTCC-AGCAATGTCAAT-AT-TGCCACGAAATAGGTCAGGAAGAATTT--TCGGGAA--A------TGTG----------------CG------------CAGAC-----AG-------CAC--------------TAC-AA--A-CCGGA------TT-TAACTAGATTGAAACAAAATGTGTCTTTCTAGTTGCAAATAACGAGCAATTGAT
gi|3 : TATATATG-TT---GTATTT---------AA-TGTGTAAT--AAATAAATACTTTCAAG---ACGACA----ACATT---TAGATGTTAT----------------T------------G-ATGTGTAAACTGTTTAAATGTAACAGCTGAAAC--TCACCTGACCTTGACTAGTCTCCATATTTAATTTGAATGATGG---CGAAGGAAAATA-----GTT--CAA---TGA---------TGATGAAGGGAAATACAATAG-TTCAAGA-CGGGCAAACCATAGTTGCA---T---GAAACAA---GC---ATCCT--ATAATATAGAAAAGACTTTAC-TTA-TCT-ATTATACTTA-TTCAAAACAAGAGG--T-AAAGAAA-----AAT---CCA--AAATACGTTTTCC-AACAATG-----------CCGCAAAATAGGTCGCGGAG---TTACTCAC-----A------CGCG----------------GA------------CAGAC-----GG-------CACGAAAACAACAACAACAC-AACGC-CCGGATTTTTTTT-TTATTTGAATGAAGCAAAATAA--CCTCAAAGTTGCAAATTGCAAGTAATGG
gi|4 : aTTGGT---AATGATTT---CCA-------TAAATTACTT--AAA---CGGGTCTAATATTAGTAAAGGGAAATA-----A-TCCAAGATTGAAGAAGTTAAAAACTC--------AAAATAATTTAG--CATCAT--ATAATGTAGGT----------GTTATT-T-ACTATACTGA-TT-GAA-T-----G--T-AAA---------------CCAGA--------TCGCC-AACAATTTCAAA-AA-TACCAGGAAGTAGATCctttcaatggaaattaagcagaatatattaattaagtgactgt
gi|4 : AGAT-----GA-------CAA--------------TAG-AA--AATCGAA------TCCTAACTTGATTGAAGCAAACTGTGTCTTCATAGTGTCAAACAACAAGCAATGGATtatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaaaatcgaatcctaacttgattgaagcaaactgtgtcttcatagtgtcaaacaacaagcaatggatttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|5 : ttggtaatgatttccataaattacttaaacgggtctaatattagtaaagggaaataatccaagattgaagaagttaaaaactcaaaataatttagcatcatataatgtaggtgttatttactatactgattgaatgtaaaccagatcgccaacaatttcaaaaataccaggaagtagatctatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaTCAAA-TAAAA-------AAAAGTTACATAATGAACCAGAA--CACATTTTCA-ATCAATTTCAAC-AA-TTCCGCGAAATAGATTGCGAAGA--TT----GTGGAGCA------TGTG----------------CATCCATACGCAGCCAGAC-----GG-------CAC--------------TAT-AA--A-TTGAA------AT-TAACTATTTTGAAACAAAAAGTGTCGTCATATTTGCAAATGTTAAGCAGTGGATttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|6 : cataatttgttgtaTGTTAAACGAAA-ACAAG-GTC-AAAAACATCGCAG------AAAAAGCATCCCCGCATTAGCTG-GTTACT--GCAATGTTTGCG-ATCTTCAATGATCATCCTT-GTCTTA-AAAA-C-GAA-AGGG---ACTT-TCTATTATTTT-G-ATTT--TTCAGTGCA-TTT----T--GTA-ACATACTTTCAAGTATGC---A----GTA--A--TAAA----ATA---------------T------------G-ATCTCGGAGTTATTCACATGTAACGGCTGAAAA---------------ATTTGTCTCCATA-TTGGT---AATGATTT----CA-------TA-----TTTGGGAA----GA---------TGGTATAAGGAAATA-----T-TCCAAGA-AGAACAAACTCTAAACTTA---T--C-AAATAA---AC--tttaactggtaatggatattggagaaaaacttttttcaaatgattgcgtttctatgcacccccccccctcaaataaaaaccccaatggcttatgtattgatgtattattcactgggtaaaactggtaacttgtttt
gi|7 : -AAATACTTTCA-G---AT---ACCAGGTAT-G--TAAA----ATATGGACATTAGTTACAT------------GTACCTGAACGCTATTCAAATGGAACAGTTGAAAA-ATCACCTGATCTCAATTTGTCTCCATATTTGGT---ACTGATTT---CCA-------TA-----TTT--GGA---TGA---------TGGTAAATGGAAAGA-----G-TTCAAGA-TGAA-ATATTCTAAA-TCA---TCATAAAATAatgttttgtattattctaaatttcaaag
gi|7 : tatAT---CCAGAGAACATGTTACCC-AACAAATTCAAC-A-------C---ATAGATCATGAAG----T--TCATGGA--A------TGTA----------------CA------------CAAACAGAT-GG-------CAC--------------TAA-AA--A-CCAGA------TA-TAACTAGAtctaggtatgcattttttatccagagaacatgttacccaacaaattcaacacatagatcatgaagttcatggaatgtacacaaacagatggcactaaaaaccagatataactagagcagatgacaagcaacggatttcaat
gi|8 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacctgaacgctattcaaatggaacagttgaaaaatcacctgatctcaatttgtctccatatttggtactgatttccatatttggatgatggtaaatggaaagagttcaagatgaaatattctaaatcatcataaaatatctaggtatgcatttttt------ACATTA-TAC-ATTATGCTTA-TTCAAA----------T-AAAAGGT--------------GAAAA------------------TCAA---A-C-C--------AGGTTGCTGAG----T--TTGTGGA--AAGTATATATT----------------CA------------CAGAT-----GGACAGTAACAT--------------GAA-AA--A-CATTA------TC-TTACTAGATTAAAACAAAACGTGTCTTCATAGTTGCAAATAACAAACAACAGATgcagatgacaagcaacggatttcaat
gi|9 : tgtACATATTTTC-----AATTCCAAC-TA-TGTCGAGAAATAGATTGCG--GA--TT--TTGTAAG--A------TGTGTATTCCTGTATTAGTACA------------CAGAC-----AG--------ACG-------------TACTAA--A-CTGAA------AG-TAACTAAACTGAAA---AATGCGTCTTCATAATTGAAAATGACAAGTTATGGATttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAAAATCCAAAATGTGTTGCTCAAAGATTACGTCATACAAAGGTGGAAAATGTTAAGTGGTAATGGATATTGGAGAAAAACTTTTTTCAATGATTGCGTTTCTATGCAACCCCCCCCCAATAAAAACCCCAATGGTTTATGTATTGATGTATTCACTGGGTAAAACTGGTAACTTGTTT
Unaligned ( gi|18 ): ATCGGACACTTGGCTTGCGAAGATGGTATGGGCTATATACTGCAGTGTATTCAAACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1 11 777777777777777777777777777777777777777777777777777 2 1 1 1111 33333 1 111 44444444444444444444444444 222222222222222222222222222222222222222222222222222222222222 1 111111111 111 111 1111111 11111 222222222 111 1111111 111111 333333333 111 111 9999999999999999999999999999999999999999999999999999999999999999 1111111111 33333333333333 44444444444444444444444444444444444444444444444444444444444444444 333333333333333333333333333333333333 111111111
lowQualScore : 2222222 3 44 0 111111111111111111111111111111111111111111111111111 3 2 1 3 7777 6 33333 3 0 000 11 00000000000000000000000000 999999999999999999999999999999999999999999999999999999999999 6 2 3 5 111111111 000 000 8888888 22222 5 1 222222222 000 5555555 000000 1 0 3 222222222 000 444 66 0000000000000000000000000000000000000000000000000000000000000000 1 777777 5555555555 0 44444444444444 888 99999999999999999999999999999999999999999999999999999999999999999 333333333333333333333333333333333333 88 55 3 0 333333333 2 0 1
lowQualScore : ....... . .. . ................................................... . . . . .... . ..... . . ... .. .......................... ............................................................ . . . . ......... ... ... ....... ..... . . ......... ... ....... ...... . . . ......... ... ... .. ................................................................ . ...... .......... . .............. ... ................................................................. .................................... .. .. . . ......... . . .
lowQualScore : 7777777 3 77 7 333333333333333333333333333333333333333333333333333 3 0 0 3 3333 7 77777 2 0 222 66 11111111111111111111111111 777777777777777777777777777777777777777777777777777777777777 7 2 2 5 222222222 000 000 6666666 55555 0 7 999999999 000 9999999 111111 7 7 0 999999999 000 555 33 2222222222222222222222222222222222222222222222222222222222222222 1 666666 6666666666 7 44444444444444 666 00000000000000000000000000000000000000000000000000000000000000000 888888888888888888888888888888888888 77 00 6 8 444444444 5 5 0
consensus : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAGAAA---AAAG-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATC-TCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A-TTCAAA-TAAAAGG--T-AAAAAGT-----AAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
Reference ( family-1653 ) : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAGAAA---AAAGCATCC----AT-AACC-G-G-TTA-C-GAAATGC--GC-ATCTCCGATCTTCATCCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAGTATAGGTAA------ACGTTA-T-T-ATTATNCTTA-TTCAAA-TAAAAG---T-AAAAAGT-----AAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
gi|1 : TCTGTTAAACAAGA-G---ATGT-AGATTAACATTGCAGGAAGAAAAAAAATT-----AT-AACCCGTG-TTAGC-GGAATGT--GC-ATTTCCGACCTTTATT-TCTGTATAA-CAAAGC-AAAGAA------TTGATATTTT-TTTT-GTATCT--TTT--GAAA-TAT-----------AAATACCC-CAAG--------------TA-CG--TGAA----AT----------------TAGATACGTTATTG-ACCCTTAAGTTATTTTAAGGAAACAGCT--AAAAATCACGTGACCTTGACTTGTTTCCTTATTTGGT---AATAATTT---CCA-------TA-----TTT-GAAAGA---------TG---GTAAAAGGAAATA-----G-TACGAGA-AAAA-------TAAACTC------------TAA---AC------GCAT----TAAGTAA------AC--CA-T-C-ATT------------AA-TAGAA----T-GAA---T-----AAT---T----------ATTTTCT-TTTTATTGAATTGCAAGTT-GA-T-CC-----ATATGTCACGGCAAAA--TGGGT--TTGTTAA--T------TGATTCATA----------------CA------------CGGAC-----ATTCTG-------CAC--------------TAA-AA--A-T--AA------TC-TAACTAGATTGAAACGTAATGCGTCTTCATTGCTGCAAATAACAAGCAATGGA
gi|10 : GAA------TT-CAACTAGAATGAAACTAAATGTGTTTCCATAGTTGCAAATCACAAGCGATGGATcttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|12 : taaataaaagcaaaatcaccacacaccatcgaagaaagaatgcttgttttgaatttattttattatggatgttgacggttctcaatcagaacaaaattcattagattaattccactcctgatgtaaaA-----TTT-GAACGA---------TGATGGTAAAGGGAGATA-----GGTCTAAGA-A---CAAACTCTAAACTCA---T---AAAATAA---AC--CATCATTTGGTATAGGTAA------GGGT-------------------------TAAAAA---T-AA----------------CAAGAAAACATATTTTTCAA---AC--AATTTCAA--CAAA-G-CTATGAAATAGGATAC----AGA--T---A--TTGTGGA--A------TG-----t
gi|13 : --TAACATAA---AC--CCCTGTATAGCAAAGAAAA------ACATAA-T-TTATTATA------TCAAA-TAAAAAGGTT-ACATAAT-----GAA---CCAGAAAACATATTTTCC-A---TC--AATTTCAA--C-AATT-CCGCGAAATAGGTTGCG--AAGA---------TCGTGGA--G------TA-----TG----------------TG------------CAcatacaaccat
gi|14 : TTC-AT-TTT--CTT--TAAACTAC----T--ATG-AT-TACTTTCAAGTA-GT---A----GTATTGCATAAA----AT-----------------------------G-ACCTGTAAGTTATTTAAACGTAAAAGCTG--AAAATCACC--------ACTTGTTCTCATATTTGGT---AGTGGTTT---CCG-------TA-----TTT-
gi|15 : aaaaaaccaaac------TA-----TA----------------CG------------CAGATATAGGG----G-------CAC---------------A--AA--A-GCGCT------TC-TAACTTGATTTAAACAAAATGCGTCTTCATTGTTGCAAGTCACAAGCCATGAAT
gi|16 : aaagcgtatacttagtatacatgtatg------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AT-TATCTAGATTGAATCAGAATGTGAGTT-GTAGTTGTGAATGACAAttgaaaagaaattac
gi|17 : ------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AC-TAACTATATTGAATCAGAATGTGAGTT-GTAGTTGTGAATaaaa
gi|2 : aTTTGTTAAACGGGATATAAATGT-AG-TTAACATTGTAAAAA---TAA---TAC----AT-AACC-G-GGTCA-T-GAAA-----GC-------GATCTTCATC-TCCCTATGAGCAAA-CCAAAGAAAGCCAATTTATATATT-TTTCTGTATTTCTTTT--TGAA-TTT----TTAAAA-AAATACTTTTAA---------A----GTATC---TAAA----A------------------------------G-AACTGTAAGTCATTTAAACGTAACAGCTGAAAAAATTGCGCGACCTTGACTTGTCTCTATATTTGAT---GATGGTTTGAACCA-------TA-----TAC-TAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGGACAAAATCCAAAATCAATTT--TAAAAAAA---ACACCATCGTATGATAAAGGTAA------ACGTTG-TAT-ATTATTCTAAATTCAAA-TAAAAGG--TGAAAAAGT-----AAT---CCAGAAGACGCATTTTCC-A---GC--AATGTCAA--T-AT-TGCCACGAAATAGGTCAGG--AAGAATT---T--TCGGGAA--A------TG-----TG----------------CG------------CAGAC-----A----G-------CAC--------------TAC-AA--A-CCGGA------TT-TAACTAGATTGAAACAAAATGTGTCTTTCTAGTTGCAAATAACGAGCAATTGAT
gi|3 : TATATATG-TT---GTATTT---------AA-TGTGTAAT--AAATAAATACTTTCAAG---ACGACA----ACATT---TAGATGTTAT----------------T------------G-ATGTGTAAACTGTTTAAATGTAACAGCTGAAAC--TCACCTGACCTTGACTAGTCTCCATATTTAATTTGAATGATGG---CGAAGGAAAATA-----GTT-CAATGA---------TG---ATGAAGGGAAATACAATAG-TTCAAGA-CGGGCAAACCATAGTTGCA---T---GAAACAA---GC---ATCCTATAATATAGAAAAGACTTTAC-TTA-TCT-ATTATACTTA-TTCAAAACAAGAGG--T-AAAGAAA-----AAT---CCA--AAATACGTTTTCC-A---AC--AAT------------G-CCGCAAAATAGGTCGCG--GAG---T---TACTCAC-----A------CG-----CG----------------GA------------CAGAC-----G----G-------CACGAAAACAACAACAACAC-AACGC-CCGGATTTTTTTT-TTATTTGAATGAAGCAAAATAA--CCTCAAAGTTGCAAATTGCAAGTAATGG
gi|4 : aTTGGT---AATGATTT---CCA-------TAAATTACTT-AAACGGGTCTAATATTA---GTAAAGGGAAATA-----A-TCCAAGATTGAAGAAGTTAAAAACTC--------AAAATAATTTAG--CATCATATAATGTAGGT----------GTTATT-T-ACTATACTGA-TT-GAA-T----G---T-AAA---------------CCAGA--------TCGCC-A---AC--AATTTCAA--A-AA-TACCAGGAAGTAGATCctttcaatggaaattaagcagaatatattaattaagtgactgt
gi|4 : AGAT-----G----A-------CAA--------------TAG-AA--AATCGAA------TCCTAACTTGATTGAAGCAAACTGTGTCTTCATAGTGTCAAACAACAAGCAATGGATtatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaaaatcgaatcctaacttgattgaagcaaactgtgtcttcatagtgtcaaacaacaagcaatggatttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|5 : ttggtaatgatttccataaattacttaaacgggtctaatattagtaaagggaaataatccaagattgaagaagttaaaaactcaaaataatttagcatcatataatgtaggtgttatttactatactgattgaatgtaaaccagatcgccaacaatttcaaaaataccaggaagtagatctatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaTCAAA-TAAAA-------AAAAGTTACATAATGAACCAGAA--CACATTTTCA-A---TC--AATTTCAA--C-AA-TTCCGCGAAATAGATTGCG--AAGA--T---T----GTGGAGCA------TG-----TG----------------CATCCATACGCAGCCAGAC-----G----G-------CAC--------------TAT-AA--A-TTGAA------AT-TAACTATTTTGAAACAAAAAGTGTCGTCATATTTGCAAATGTTAAGCAGTGGATttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|6 : cataatttgttgtaTGTTAAACGAAA-ACAAG-GTCAAA--AACATCGCAGAAA---AA-GCATCCCCGCATTAGCT-G-G-TTA-CTGCAATGTTTGCGATCTTCAATGATCATCCTT-GTCTTA-AAAA-C-GAA-AGGG---ACTT-TCTATTATTTT-G-ATTT--TTCAGTGCA-TTT----T--GTA-ACATACTTTCAAGTATGC---A----GTA--A--TAAA----ATA---------------T------------G-ATCTCGGAGTTATTCACATGTAACGGCTGAAAA---------------ATTTGTCTCCATA-TTGGT---AATGATTT----CA-------TA-----TTTGGGAAGA---------TG---GTATAAGGAAATA-----T-TCCAAGA-AGAACAAACTCTAAACTTA---T--C-AAATAA---AC--tttaactggtaatggatattggagaaaaacttttttcaaatgattgcgtttctatgcacccccccccctcaaataaaaaccccaatggcttatgtattgatgtattattcactgggtaaaactggtaacttgtttt
gi|7 : -AAATACTTTCA-G---AT---ACCAGGTAT-G--TAAA----ATATGGACATTAGTTACAT------------GTACCTGAACGCTATTCAAATGGAACAGTTGAAAA-ATCACCTGATCTCAATTTGTCTCCATATTTGGT---ACTGATTT---CCA-------TA-----TTT-GGATGA---------TG---GTAAATGGAAAGA-----G-TTCAAGA-TGAA-ATATTCTAAA-TCA---TCATAAAATAatgttttgtattattctaaatttcaaag
gi|7 : tatAT---CCAGAGAACATGTTACCC-A---AC--AAATTCAA--C-A-------C---ATAGATCATG--AAG-------T--TCATGGA--A------TG-----TA----------------CA------------CAAACAGAT-G----G-------CAC--------------TAA-AA--A-CCAGA------TA-TAACTAGAtctaggtatgcattttttatccagagaacatgttacccaacaaattcaacacatagatcatgaagttcatggaatgtacacaaacagatggcactaaaaaccagatataactagagcagatgacaagcaacggatttcaat
gi|8 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacctgaacgctattcaaatggaacagttgaaaaatcacctgatctcaatttgtctccatatttggtactgatttccatatttggatgatggtaaatggaaagagttcaagatgaaatattctaaatcatcataaaatatctaggtatgcatttttt------ACATTA-TAC-ATTATGCTTA-TTCAAA----------T-AAAAGGT--------------GAAAA-----------------------TCAA-----A-C-C--------AGGTTGCT--GAG-------T--TTGTGGA--AAGTATATA-----TT----------------CA------------CAGAT-----G----GACAGTAACAT--------------GAA-AA--A-CATTA------TC-TTACTAGATTAAAACAAAACGTGTCTTCATAGTTGCAAATAACAAACAACAGATgcagatgacaagcaacggatttcaat
gi|9 : tgtACATATTTTC----------AATTCCAA--C-TA-TGTCGAGAAATAGATTGCG----GA--T---T--TTGTAAG--A------TG-----TGTATTCCTGTATTAGTACA------------CAGAC-----A----G--------ACG-------------TACTAA--A-CTGAA------AG-TAACTAAACTGAAA---AATGCGTCTTCATAATTGAAAATGACAAGTTATGGATttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAAAATCCAAAATGTGTTGCTCAAAGATTACGTCATACAAAGGTGGAAAATGTTAAGTGGTAATGGATATTGGAGAAAAACTTTTTTCAATGATTGCGTTTCTATGCAACCCCCCCCCAATAAAAACCCCAATGGTTTATGTATTGATGTATTCACTGGGTAAAACTGGTAACTTGTTT
Unaligned ( gi|18 ): ATCGGACACTTGGCTTGCGAAGATGGTATGGGCTATATACTGCAGTGTATTCAAACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1 11 2222 444444444 1 22222 222 2222222222222 1 1111 33333 1 111 44444444444444444444444444 222222222222222222222222222222222222222222222222222222222222 1 111111111 111 111 1111111 11111 222222222 111 1111111 111111 333333333 111 111 66666666666666666666666666666666666666666666666666666666666666666 1111111111 333333333 44444444444444444444444444444444444444444444444444444444444444444 333333333333333333333333333333333333 111111111
lowQualScore : 2222222 3 44 0 8888 666666666 3 00000 222 1 9999999999999 0 1 3 7777 6 33333 3 0 000 11 00000000000000000000000000 999999999999999999999999999999999999999999999999999999999999 6 2 3 5 111111111 000 000 8888888 22222 5 1 222222222 000 5555555 000000 1 0 3 222222222 000 444 4 11111111111111111111111111111111111111111111111111111111111111111 77 2 0000000000 0 111111111 3 0 888 99999999999999999999999999999999999999999999999999999999999999999 333333333333333333333333333333333333 88 55 3 0 333333333 2 0 1
lowQualScore : ....... . .. . .... ......... . ..... ... . ............. . . . .... . ..... . . ... .. .......................... ............................................................ . . . . ......... ... ... ....... ..... . . ......... ... ....... ...... . . . ......... ... ... . ................................................................. .. . .......... . ......... . . ... ................................................................. .................................... .. .. . . ......... . . .
lowQualScore : 7777777 3 77 7 3333 333333333 3 00000 000 0 0000000000000 7 0 3 3333 7 77777 2 0 222 66 11111111111111111111111111 777777777777777777777777777777777777777777777777777777777777 7 2 2 5 222222222 000 000 6666666 55555 0 7 999999999 000 9999999 111111 7 7 0 999999999 000 555 2 44444444444444444444444444444444444444444444444444444444444444444 00 7 7777777777 8 111111111 7 7 666 00000000000000000000000000000000000000000000000000000000000000000 888888888888888888888888888888888888 77 00 6 8 444444444 5 5 0
consensus : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---TCAAA-TAAAAGG--T-AAAAAGT-----AAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
Reference ( family-1653 ) : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG----AAAAAAGATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A--TTCAAA-TAAAAGG--T-AAAAAGT-----AAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
gi|1 : TCTGTTAAACAAGA-G---ATGT-AGATTAACATTGCAGGAAGAAAAAAAATT-----AT-AACCCGTG-TTAGC-GGAATGT--GC-ATTTCCGACCTTTATTTCTGTATAA-CAAAGC-AAAGAA------TTGATATTTT-TTTT-GTATCT--TTT--GAAA-TAT-----------AAATACCC-CAAG--------------TA-CG--TGAA----AT----------------TAGATACGTTATTG-ACCCTTAAGTTATTTTAAGGAAACAGCT--AAAAATCACGTGACCTTGACTTGTTTCCTTATTTGGT---AATAATTT---CCA-------TA-----TTT-GAAAGA---------TG---GTAAAAGGAAATA-----G-TACGAGA-AAAA-------TAAACTC------------TAA---AC------GCAT----TAAGTAA------AC--CA-T-C-ATT-------------AA-TAGAA----T-GAA---T-----AAT---T----------ATTTTCT-TTTTATTGAATTGCAAGTT-GA-T-CC-----ATATGTCACGGCAAAA--TGGGT--TTGTTAA--T------TGATTCATA----------------CA------------CGGAC-----ATTCTG-------CAC--------------TAA-AA--A-T--AA------TC-TAACTAGATTGAAACGTAATGCGTCTTCATTGCTGCAAATAACAAGCAATGGA
gi|10 : GAA------TT-CAACTAGAATGAAACTAAATGTGTTTCCATAGTTGCAAATCACAAGCGATGGATcttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|12 : taaataaaagcaaaatcaccacacaccatcgaagaaagaatgcttgttttgaatttattttattatggatgttgacggttctcaatcagaacaaaattcattagattaattccactcctgatgtaaaA-----TTT-GAACGA---------TGATGGTAAAGGGAGATA-----GGTCTAAGA-A---CAAACTCTAAACTCA---T---AAAATAA---AC--CATCATTTGGTATAGGTAA------GGGTTA-----A--------------AAA-TAA--------------------------CAAGAAAACATATTTTTCAA---AC--AATTTCAA--CAAA-G-CTATGAAATAGGATAC----AGA--T---A--TTGTGGA--A------TG-----t
gi|13 : --TAACATAA---AC--CCCTGTATAGCAAAGAAAA------ACATAA-T-TTATTATA-------TCAAA-TAAAAAGGTT-ACATAAT-----GAA---CCAGAAAACATATTTTCC-A---TC--AATTTCAA--C-AATT-CCGCGAAATAGGTTGCG--AAGA---------TCGTGGA--G------TA-----TG----------------TG------------CAcatacaaccat
gi|14 : TTC-AT-TTT--CTT--TAAACTAC----T--ATG-AT-TACTTTCAAGTA-GT---A----GTATTGCATAAA----AT-----------------------------G-ACCTGTAAGTTATTTAAACGTAAAAGCTG--AAAATCACC--------ACTTGTTCTCATATTTGGT---AGTGGTTT---CCG-------TA-----TTT-
gi|15 : aaaaaaccaaac------TA-----TA----------------CG------------CAGATATAGGG----G-------CAC---------------A--AA--A-GCGCT------TC-TAACTTGATTTAAACAAAATGCGTCTTCATTGTTGCAAGTCACAAGCCATGAAT
gi|16 : aaagcgtatacttagtatacatgtatg------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AT-TATCTAGATTGAATCAGAATGTGAGTT-GTAGTTGTGAATGACAAttgaaaagaaattac
gi|17 : ------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AC-TAACTATATTGAATCAGAATGTGAGTT-GTAGTTGTGAATaaaa
gi|2 : aTTTGTTAAACGGGATATAAATGT-AG-TTAACATTGTAA----AAATAA--TAC----AT-AACC-G-GGTCA-T-GAAA-----GC-------GATCTTCATCTCCCTATGAGCAAA-CCAAAGAAAGCCAATTTATATATT-TTTCTGTATTTCTTTT--TGAA-TTT----TTAAAA-AAATACTTTTAA---------A----GTATC---TAAA----A------------------------------G-AACTGTAAGTCATTTAAACGTAACAGCTGAAAAAATTGCGCGACCTTGACTTGTCTCTATATTTGAT---GATGGTTTGAACCA-------TA-----TAC-TAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGGACAAAATCCAAAATCAATTT--TAAAAAAA---ACACCATCGTATGATAAAGGTAA------ACGTTG-TAT-ATTATTCT-AAATTCAAA-TAAAAGG--TGAAAAAGT-----AAT---CCAGAAGACGCATTTTCC-A---GC--AATGTCAA--T-AT-TGCCACGAAATAGGTCAGG--AAGAATT---T--TCGGGAA--A------TG-----TG----------------CG------------CAGAC-----A----G-------CAC--------------TAC-AA--A-CCGGA------TT-TAACTAGATTGAAACAAAATGTGTCTTTCTAGTTGCAAATAACGAGCAATTGAT
gi|3 : TATATATG-TT---GTATTT---------AA-TGTGTAAT--AAATAAATACTTTCAAG---ACGACA----ACATT---TAGATGTTAT----------------T------------G-ATGTGTAAACTGTTTAAATGTAACAGCTGAAAC--TCACCTGACCTTGACTAGTCTCCATATTTAATTTGAATGATGG---CGAAGGAAAATA-----GTT-CAATGA---------TG---ATGAAGGGAAATACAATAG-TTCAAGA-CGGGCAAACCATAGTTGCA---T---GAAACAA---GC---ATCCTATAATATAGAAAAGACTTTAC-TTA-TCT-ATTATACTTA--TTCAAAACAAGAGG--T-AAAGAAA-----AAT---CCA--AAATACGTTTTCC-A---AC--AATG-------------CCGCAAAATAGGTCGCG--GAG---T---TACTCAC-----A------CG-----CG----------------GA------------CAGAC-----G----G-------CACGAAAACAACAACAACAC-AACGC-CCGGATTTTTTTT-TTATTTGAATGAAGCAAAATAA--CCTCAAAGTTGCAAATTGCAAGTAATGG
gi|4 : aTTGGT---AATGATTT---CCA-------TAAATTACTT-AAACGGGTCTAATATTA---GTAAAGGGAAATA-----A-TCCAAGATTGAAGAAGTTAAAAACTC--------AAAATAATTTAG--CATCATATAATGTAGGT----------GTTATT-T-ACTATACT-G--ATTGAA-T-----G--T-AAA---------------CCAGA--------TCGCC-A---AC--AATTTCAA--A-AA-TACCAGGAAGTAGATCctttcaatggaaattaagcagaatatattaattaagtgactgt
gi|4 : AGAT-----G----A-------CAA--------------TAG-AA--AATCGAA------TCCTAACTTGATTGAAGCAAACTGTGTCTTCATAGTGTCAAACAACAAGCAATGGATtatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaaaatcgaatcctaacttgattgaagcaaactgtgtcttcatagtgtcaaacaacaagcaatggatttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|5 : ttggtaatgatttccataaattacttaaacgggtctaatattagtaaagggaaataatccaagattgaagaagttaaaaactcaaaataatttagcatcatataatgtaggtgttatttactatactgattgaatgtaaaccagatcgccaacaatttcaaaaataccaggaagtagatctatcttctagttcatgaaatgtatatatacatttacatgtactcatagatta-T-T-GTTGTA-------TCAAA-TAAAA-------AAAAGTTACATAATGAACCAGAA--CACATTTTCA-A---TC--AATTTCAA--C-AA-TTCCGCGAAATAGATTGCG--AAGA--T---T----GTGGAGCA------TG-----TG----------------CATCCATACGCAGCCAGAC-----G----G-------CAC--------------TAT-AA--A-TTGAA------AT-TAACTATTTTGAAACAAAAAGTGTCGTCATATTTGCAAATGTTAAGCAGTGGATttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|6 : cataatTGTTAAACGAAA-ACAAG-GTCAAA--AACATCGCAG----AAAAAGCATCCCCGCATTAGCT-G-G-TTA-CTGCAATGTTTGCGATCTTCAATGATCATCCTTGTCTTA-AAAA-C-GAA-AGGG---ACTT-TCTATTATTTT-G-ATTT--TTCAGTGCA-TTT----T--GTA-ACATACTTTCAAGTATGC---A----GTA--A--TAAA----ATA---------------T------------G-ATCTCGGAGTTATTCACATGTAACGGCTGAAAA---------------ATTTGTCTCCATA-TTGGT---AATGATTT----CA-------TA-----TTTGGGAAGA---------TG---GTATAAGGAAATA-----T-TCCAAGA-AGAACAAACTCTAAACTTA---T--C-AAATAA---AC--tttaactggtaatggatattggagaaaaacttttttcaaatgattgcgtttctatgcacccccccccctcaaataaaaaccccaatggcttatgtattgatgtattattcactgggtaaaactggtaacttgtttt
gi|7 : -AAATACTTTCA-G---AT---ACCAGGTAT-G--TAAA----ATATGGACATTAGTTACAT------------GTACCTGAACGCTATTCAAATGGAACAGTTGAAAA-ATCACCTGATCTCAATTTGTCTCCATATTTGGT---ACTGATTT---CCA-------TA-----TTT-GGATGA---------TG---GTAAATGGAAAGA-----G-TTCAAGA-TGAA-ATATTCTAAA-TCA---TCATAAAATAatgttttgtattattctaaatttcaaag
gi|7 : tatAT---CCAGAGAACATGTTACCC-A---AC--AAATTCAA--C-A-------C---ATAGATCATG--AAG-------T--TCATGGA--A------TG-----TA----------------CA------------CAAACAGAT-G----G-------CAC--------------TAA-AA--A-CCAGA------TA-TAACTAGAtctaggtatgcattttttatccagagaacatgttacccaacaaattcaacacatagatcatgaagttcatggaatgtacacaaacagatggcactaaaaaccagatataactagagcagatgacaagcaacggatttcaat
gi|8 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacctgaacgctattcaaatggaacagttgaaaaatcacctgatctcaatttgtctccatatttggtactgatttccatatttggatgatggtaaatggaaagagttcaagatgaaatattctaaatcatcataaaatatctaggtatgcatttttt------ACATTA-TAC-ATTATGCTTA--TTCAAA-TAAAAGG--T-GAAAATC-----AAA---CCAGgcagatgacaagcaacggatttcaat
gi|8 : tgtCAAACCAGGTTGCT--GAG-------T--TTGTGGA--AAGTATATA-----TT----------------CA------------CAGAT-----G----GACAGTAACAT--------------GAA-AA--A-CATTA------TC-TTACTAGATTAAAACAAAACGTGTCTTCATAGTTGCAAATAACAAACAACAGATgttgctgagtttgtggaaagtatatattcacagatggacagtaacatgaaaaacattatcttactagattaaaacaaaacgtgtcttcatagttgcaaataacaaacaacagatttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
gi|9 : tgtacattatacattatgcttattcaaataaaaggtgaaaatACATATTTTC----------AATTCCAA--C-TA-TGTCGAGAAATAGATTGCG----GA--T---T--TTGTAAG--A------TG-----TGTATTCCTGTATTAGTACA------------CAGAC-----A----G--------ACG-------------TACTAA--A-CTGAA------AG-TAACTAAACTGAAA---AATGCGTCTTCATAATTGAAAATGACAAGTTATGGATttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAAAATCCAAAATGTGTTGCTCAAAGATTACGTCATACAAAGGTGGAAAATGTTAAGTGGTAATGGATATTGGAGAAAAACTTTTTTCAATGATTGCGTTTCTATGCAACCCCCCCCCAATAAAAACCCCAATGGTTTATGTATTGATGTATTCACTGGGTAAAACTGGTAACTTGTTT
Unaligned ( gi|18 ): ATCGGACACTTGGCTTGCGAAGATGGTATGGGCTATATACTGCAGTGTATTCAAACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1 11 444444 1 333333 1 22222 222 2222222222222 1 1111 33333 1 111 44444444444444444444444444 222222222222222222222222222222222222222222222222222222222222 1 111111111 111 111 1111111 11111 222222222 111 1111111 111111 333333333 111 111 6666666666666666666666666666666666666666666666666666666666666666666 1111111111 333333333 44444444444444444444444444444444444444444444444444444444444444444 333333333333333333333333333333333333 111111111
lowQualScore : 2222222 3 44 0 000000 3 666666 3 00000 222 1 9999999999999 0 1 3 7777 6 33333 3 0 000 11 00000000000000000000000000 999999999999999999999999999999999999999999999999999999999999 6 2 3 5 111111111 000 000 8888888 22222 5 1 222222222 000 5555555 000000 1 0 3 222222222 000 444 4 4444444444444444444444444444444444444444444444444444444444444444444 77 2 0000000000 0 111111111 3 0 888 99999999999999999999999999999999999999999999999999999999999999999 333333333333333333333333333333333333 88 55 3 0 333333333 2 0 1
lowQualScore : ....... . .. . ...... . ...... . ..... ... . ............. . . . .... . ..... . . ... .. .......................... ............................................................ . . . . ......... ... ... ....... ..... . . ......... ... ....... ...... . . . ......... ... ... . ................................................................... .. . .......... . ......... . . ... ................................................................. .................................... .. .. . . ......... . . .
lowQualScore : 7777777 3 77 7 000000 3 000000 3 00000 000 0 0000000000000 7 0 3 3333 7 77777 2 0 222 66 11111111111111111111111111 777777777777777777777777777777777777777777777777777777777777 7 2 2 5 222222222 000 000 6666666 55555 0 7 999999999 000 9999999 111111 7 7 0 999999999 000 555 2 3333333333333333333333333333333333333333333333333333333333333333333 00 7 7777777777 8 111111111 7 7 666 00000000000000000000000000000000000000000000000000000000000000000 888888888888888888888888888888888888 77 00 6 8 444444444 5 5 0
consensus : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--T-AAAAAAT-----AAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
Reference ( family-1653 ) : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--T-AAAAAGT-----AAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
gi|1 : TCTGTTAAACAAGA-G---ATGT-AGATTAACATTGCAGGAAGAAAAAAA-ATT-----AT-AACCCGTG-TTAGC-GGAATGT--GC-ATTTCCGACCTTTATTTCTGTATAA-CAAAGC-AAAGAA------TTGATATTTT-TTTT-GTATCT--TTT--GAAA-TAT-----------AAATACCC-CAAG--------------TA-CG--TGAA----AT----------------TAGATACGTTATTG-ACCCTTAAGTTATTTTAAGGAAACAGCT--AAAAATCACGTGACCTTGACTTGTTTCCTTATTTGGT---AATAATTT---CCA-------TA-----TTT-GAAAGA---------TG---GTAAAAGGAAATA-----G-TACGAGA-AAAA-------TAAACTC------------TAA---AC------GCAT----TAAGTAA------AC--CA-T-C-ATTA----------------ATAGAA----T-GAA---T-----AAT---T----------ATTTTCT-TTTTATTGAATTGCAAGTT-GA-T-CC-----ATATGTCACGGCAAAA--TGGGT--TTGTTAA--T------TGATTCATA----------------CA------------CGGAC-----ATTCTG-------CAC--------------TAA-AA--A-T--AA------TC-TAACTAGATTGAAACGTAATGCGTCTTCATTGCTGCAAATAACAAGCAATGGA
gi|10 : GAA------TT-CAACTAGAATGAAACTAAATGTGTTTCCATAGTTGCAAATCACAAGCGATGGATcttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|12 : taaataaaagcaaaatcaccacacaccatcgaagaaagaatgcttgttttgaatttattttattatggatgttgacggttctcaatcagaacaaaattcattagattaattccactcctgatgtaaaA-----TTT-GAACGA---------TGATGGTAAAGGGAGATA-----GGTCTAAGA-A---CAAACTCTAAACTCA---T---AAAATAA---AC--CATCATTTGGTATAGGTAA------GGGTT---------------------------------------AAAAAT-----AA----CAAGAAAACATATTTTTCAA---AC--AATTTCAA--CAAA-G-CTATGAAATAGGATAC----AGA--T---A--TTGTGGA--A------TG-----t
gi|13 : --TAACATAA---AC--CCCTGTATAGCAAAGAAAA------ACATAA-T-TTATTATA-------T-C--AAATAAAAAGGTT-ACATAAT-----GAA---CCAGAAAACATATTTTCC-A---TC--AATTTCAA--C-AATT-CCGCGAAATAGGTTGCG--AAGA---------TCGTGGA--G------TA-----TG----------------TG------------CAcatacaaccat
gi|14 : TTC-AT-TTT--CTT--TAAACTAC----T--ATG-AT-TACTTTCAAGTA-GT---A----GTATTGCATAAA----AT-----------------------------G-ACCTGTAAGTTATTTAAACGTAAAAGCTG--AAAATCACC--------ACTTGTTCTCATATTTGGT---AGTGGTTT---CCG-------TA-----TTT-
gi|15 : aaaaaaccaaac------TA-----TA----------------CG------------CAGATATAGGG----G-------CAC---------------A--AA--A-GCGCT------TC-TAACTTGATTTAAACAAAATGCGTCTTCATTGTTGCAAGTCACAAGCCATGAAT
gi|16 : aaagcgtatacttagtatacatgtatg------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AT-TATCTAGATTGAATCAGAATGTGAGTT-GTAGTTGTGAATGACAAttgaaaagaaattac
gi|17 : ------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AC-TAACTATATTGAATCAGAATGTGAGTT-GTAGTTGTGAATaaaa
gi|2 : aTTTGTTAAACGGGATATAAATGT-AG-TTAACATTGTA------AAAATA-ATAC----AT-AACC-G-GGTCA-T-GAAA-----GC-------GATCTTCATCTCCCTATGAGCAAA-CCAAAGAAAGCCAATTTATATATT-TTTCTGTATTTCTTTT--TGAA-TTT----TTAAAA-AAATACTTTTAA---------A----GTATC---TAAA----A------------------------------G-AACTGTAAGTCATTTAAACGTAACAGCTGAAAAAATTGCGCGACCTTGACTTGTCTCTATATTTGAT---GATGGTTTGAACCA-------TA-----TAC-TAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGGACAAAATCCAAAATCAATTT--TAAAAAAA---ACACCATCGTATGATAAAGGTAA------ACGTTG-TAT-ATTATTCT-AAATT-C--AAATAAAAGG--TGAAAAAGT-----AAT---CCAGAAGACGCATTTTCC-A---GC--AATGTCAA--T-AT-TGCCACGAAATAGGTCAGG--AAGAATT---T--TCGGGAA--A------TG-----TG----------------CG------------CAGAC-----A----G-------CAC--------------TAC-AA--A-CCGGA------TT-TAACTAGATTGAAACAAAATGTGTCTTTCTAGTTGCAAATAACGAGCAATTGAT
gi|3 : TATATATG-TT---GTATTT---------AA-TGTGTAAT--AAATAAATACTTTCAAG---ACGACA----ACATT---TAGATGTTAT----------------T------------G-ATGTGTAAACTGTTTAAATGTAACAGCTGAAAC--TCACCTGACCTTGACTAGTCTCCATATTTAATTTGAATGATGG---CGAAGGAAAATA-----GTT-CAATGA---------TG---ATGAAGGGAAATACAATAG-TTCAAGA-CGGGCAAACCATAGTTGCA---T---GAAACAA---GC---ATCCTATAATATAGAAAAGACTTTAC-TTA-TCT-ATTATACTTA---T-TCAAAACAAGAGG--T-AAAGAAA-----AAT---CCA--AAATACGTTTTCC-A---AC--AATG-------------CCGCAAAATAGGTCGCG--GAG---T---TACTCAC-----A------CG-----CG----------------GA------------CAGAC-----G----G-------CACGAAAACAACAACAACAC-AACGC-CCGGATTTTTTTT-TTATTTGAATGAAGCAAAATAA--CCTCAAAGTTGCAAATTGCAAGTAATGG
gi|4 : aTTGGT---AATGATTT---CCA-------TAAATTACTT-AAACGGGTCTAATATTA---GTAAAGGGAAATA-----A-TCCAAGATTGAAGAAGTTAAAAACTC--------AAAATAATTTAG--CATCATATAATGTAGGT----------GTTATT-T-ACTATACTGA---T-T--GAAT-----G--T-AAA---------------CCAGA--------TCGCC-A---AC--AATTTCAA--A-AA-TACCAGGAAGTAGATCctttcaatggaaattaagcagaatatattaattaagtgactgt
gi|4 : AGAT-----G----A-------CAA--------------TAG-AA--AATCGAA------TCCTAACTTGATTGAAGCAAACTGTGTCTTCATAGTGTCAAACAACAAGCAATGGATtatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaaaatcgaatcctaacttgattgaagcaaactgtgtcttcatagtgtcaaacaacaagcaatggatttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|5 : ttggtaatgatttccataaattacttaaacgggtctaatattagtaaagggaaataatccaagattgaagaagttaaaaactcaaaataatttagcatcatataatgtaggtgttatttactatactgattgaatgtaaaccagatcgccaacaatttcaaaaataccaggaagtagatctatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaT-A---T-C--AAATAAAA-------AAAAGTTACATAATGAACCAGAA--CACATTTTCA-A---TC--AATTTCAA--C-AA-TTCCGCGAAATAGATTGCG--AAGA--T---T----GTGGAGCA------TG-----TG----------------CATCCATACGCAGCCAGAC-----G----G-------CAC--------------TAT-AA--A-TTGAA------AT-TAACTATTTTGAAACAAAAAGTGTCGTCATATTTGCAAATGTTAAGCAGTGGATttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|6 : cataatttgttgTGTTAAACGAAA-ACAAG-GTCAAA--AACATCGCAG-----AAAAAGCATCCCCGCATTAGCT-G-G-TTA-CTGCAATGTTTGCGATCTTCAATGATCATCCTTGTCTTA-AAAA-C-GAA-AGGG---ACTT-TCTATTATTTT-G-ATTT--TTCAGTGCA-TTT----T--GTA-ACATACTTTCAAGTATGC---A----GTA--A--TAAA----ATA---------------T------------G-ATCTCGGAGTTATTCACATGTAACGGCTGAAAA---------------ATTTGTCTCCATA-TTGGT---AATGATTT----CA-------TA-----TTTGGGAAGA---------TG---GTATAAGGAAATA-----T-TCCAAGA-AGAACAAACTCTAAACTTA---T--C-AAATAA---AC--tttaactggtaatggatattggagaaaaacttttttcaaatgattgcgtttctatgcacccccccccctcaaataaaaaccccaatggcttatgtattgatgtattattcactgggtaaaactggtaacttgtttt
gi|7 : -AAATACTTTCA-G---AT---ACCAGGTAT-G--TAAA----ATATGGACATTAGTTACAT------------GTACCTGAACGCTATTCAAATGGAACAGTTGAAAA-ATCACCTGATCTCAATTTGTCTCCATATTTGGT---ACTGATTT---CCA-------TA-----TTT-GGATGA---------TG---GTAAATGGAAAGA-----G-TTCAAGA-TGAA-ATATTCTAAA-TCA---TCATAAAATAatgttttgtattattctaaatttcaaag
gi|7 : tatAT---CCAGAGAACATGTTACCC-A---AC--AAATTCAA--C-A-------C---ATAGATCATG--AAG-------T--TCATGGA--A------TG-----TA----------------CA------------CAAACAGAT-G----G-------CAC--------------TAA-AA--A-CCAGA------TA-TAACTAGAtctaggtatgcattttttatccagagaacatgttacccaacaaattcaacacatagatcatgaagttcatggaatgtacacaaacagatggcactaaaaaccagatataactagagcagatgacaagcaacggatttcaat
gi|8 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacctgaacgctattcaaatggaacagttgaaaaatcacctgatctcaatttgtctccatatttggtactgatttccatatttggatgatggtaaatggaaagagttcaagatgaaatattctaaatcatcataaaatatctaggtatgcatttttt------ACATTA-TAC-ATTATGCTTA---TTC--AAATAAAAGG--T-GAAAATC-----AAA---CCAGgcagatgacaagcaacggatttcaat
gi|8 : tgtCAAACCAGGTTGCT--GAG-------T--TTGTGGA--AAGTATATA-----TT----------------CA------------CAGAT-----G----GACAGTAACAT--------------GAA-AA--A-CATTA------TC-TTACTAGATTAAAACAAAACGTGTCTTCATAGTTGCAAATAACAAACAACAGATgttgctgagtttgtggaaagtatatattcacagatggacagtaacatgaaaaacattatcttactagattaaaacaaaacgtgtcttcatagttgcaaataacaaacaacagatttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
gi|9 : tgtacattatacattatgcttattcaaataaaaggtgaaaatACATATTTTC----------AATTCCAA--C-TA-TGTCGAGAAATAGATTGCG----GA--T---T--TTGTAAG--A------TG-----TGTATTCCTGTATTAGTACA------------CAGAC-----A----G--------ACG-------------TACTAA--A-CTGAA------AG-TAACTAAACTGAAA---AATGCGTCTTCATAATTGAAAATGACAAGTTATGGATttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAAAATCCAAAATGTGTTGCTCAAAGATTACGTCATACAAAGGTGGAAAATGTTAAGTGGTAATGGATATTGGAGAAAAACTTTTTTCAATGATTGCGTTTCTATGCAACCCCCCCCCAATAAAAACCCCAATGGTTTATGTATTGATGTATTCACTGGGTAAAACTGGTAACTTGTTT
Unaligned ( gi|18 ): ATCGGACACTTGGCTTGCGAAGATGGTATGGGCTATATACTGCAGTGTATTCAAACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1 11 444444 1 333333 1 22222 222 2222222222222 1 1111 33333 1 111 44444444444444444444444444 222222222222222222222222222222222222222222222222222222222222 1 111111111 111 111 1111111 11111 222222222 111 1111111 111111 333333333 111 111 555555555555555555555555555555555555555555555555555555555555555555 1111111111 333333333 44444444444444444444444444444444444444444444444444444444444444444 333333333333333333333333333333333333 111111111
lowQualScore : 2222222 3 44 0 000000 3 666666 3 00000 222 1 9999999999999 0 1 3 7777 6 33333 3 0 000 11 00000000000000000000000000 999999999999999999999999999999999999999999999999999999999999 6 2 3 5 111111111 000 000 8888888 22222 5 1 222222222 000 5555555 000000 1 0 3 222222222 000 444 4 555555555555555555555555555555555555555555555555555555555555555555 77 2 0000000000 111111111 3 0 888 99999999999999999999999999999999999999999999999999999999999999999 333333333333333333333333333333333333 88 55 3 0 333333333 2 0 1
lowQualScore : ....... . .. . ...... . ...... . ..... ... . ............. . . . .... . ..... . . ... .. .......................... ............................................................ . . . . ......... ... ... ....... ..... . . ......... ... ....... ...... . . . ......... ... ... . .................................................................. .. . .......... ......... . . ... ................................................................. .................................... .. .. . . ......... . . .
lowQualScore : 7777777 3 77 7 000000 3 000000 3 00000 000 0 0000000000000 7 0 3 3333 7 77777 2 0 222 66 11111111111111111111111111 777777777777777777777777777777777777777777777777777777777777 7 2 2 5 222222222 000 000 6666666 55555 0 7 999999999 000 9999999 111111 7 7 0 999999999 000 555 2 999999999999999999999999999999999999999999999999999999999999999999 00 7 7777777777 111111111 7 7 666 00000000000000000000000000000000000000000000000000000000000000000 888888888888888888888888888888888888 77 00 6 8 444444444 5 5 0
consensus : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--TAAAAA----A-TAAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
Reference ( family-1653 ) : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--TAAAAA----A-TAAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
gi|1 : TCTGTTAAACAAGA-G---ATGT-AGATTAACATTGCAGGAAGAAAAAAA-ATT-----AT-AACCCGTG-TTAGC-GGAATGT--GC-ATTTCCGACCTTTATTTCTGTATAA-CAAAGC-AAAGAA------TTGATATTTT-TTTT-GTATCT--TTT--GAAA-TAT-----------AAATACCC-CAAG--------------TA-CG--TGAA----AT----------------TAGATACGTTATTG-ACCCTTAAGTTATTTTAAGGAAACAGCT--AAAAATCACGTGACCTTGACTTGTTTCCTTATTTGGT---AATAATTT---CCA-------TA-----TTT-GAAAGA---------TG---GTAAAAGGAAATA-----G-TACGAGA-AAAA-------TAAACTC------------TAA---AC------GCAT----TAAGTAA------AC--CA-T-C-ATTA----------------ATAGAATG-------A----A-TAAT---T----------ATTTTCT-TTTTATTGAATTGCAAGTT-GA-T-CC-----ATATGTCACGGCAAAA--TGGGT--TTGTTAA--T------TGATTCATA----------------CA------------CGGAC-----ATTCTG-------CAC--------------TAA-AA--A-T--AA------TC-TAACTAGATTGAAACGTAATGCGTCTTCATTGCTGCAAATAACAAGCAATGGA
gi|10 : GAA------TT-CAACTAGAATGAAACTAAATGTGTTTCCATAGTTGCAAATCACAAGCGATGGATcttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|12 : taaataaaagcaaaatcaccacacaccatcgaagaaagaatgcttgttttgaatttattttattatggatgttgacggttctcaatcagaacaaaattcattagattaattccactcctgatgtaaaA-----TTT-GAACGA---------TGATGGTAAAGGGAGATA-----GGTCTAAGA-A---CAAACTCTAAACTCA---T---AAAATAA---AC--CATCATTTGGTATAGGTAA------GGGTT--------------------------------------AAAA----A-TAA----CAAGAAAACATATTTTTCAA---AC--AATTTCAA--CAAA-G-CTATGAAATAGGATAC----AGA--T---A--TTGTGGA--A------TG-----t
gi|13 : --TAACATAA---AC--CCCTGTATAGCAAAGAAAA------ACATAA-T-TTATTATA-------T-C--AAATAAAAAGGTTACATA----A-TGAA---CCAGAAAACATATTTTCC-A---TC--AATTTCAA--C-AATT-CCGCGAAATAGGTTGCG--AAGA---------TCGTGGA--G------TA-----TG----------------TG------------CAcatacaaccat
gi|14 : TTC-AT-TTT--CTT--TAAACTAC----T--ATG-AT-TACTTTCAAGTA-GT---A----GTATTGCATAAA----AT-----------------------------G-ACCTGTAAGTTATTTAAACGTAAAAGCTG--AAAATCACC--------ACTTGTTCTCATATTTGGT---AGTGGTTT---CCG-------TA-----TTT-
gi|15 : aaaaaaccaaac------TA-----TA----------------CG------------CAGATATAGGG----G-------CAC---------------A--AA--A-GCGCT------TC-TAACTTGATTTAAACAAAATGCGTCTTCATTGTTGCAAGTCACAAGCCATGAAT
gi|16 : aaagcgtatacttagtatacatgtatg------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AT-TATCTAGATTGAATCAGAATGTGAGTT-GTAGTTGTGAATGACAAttgaaaagaaattac
gi|17 : ------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AC-TAACTATATTGAATCAGAATGTGAGTT-GTAGTTGTGAATaaaa
gi|2 : aTTTGTTAAACGGGATATAAATGT-AG-TTAACATTGTA------AAAATA-ATAC----AT-AACC-G-GGTCA-T-GAAA-----GC-------GATCTTCATCTCCCTATGAGCAAA-CCAAAGAAAGCCAATTTATATATT-TTTCTGTATTTCTTTT--TGAA-TTT----TTAAAA-AAATACTTTTAA---------A----GTATC---TAAA----A------------------------------G-AACTGTAAGTCATTTAAACGTAACAGCTGAAAAAATTGCGCGACCTTGACTTGTCTCTATATTTGAT---GATGGTTTGAACCA-------TA-----TAC-TAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGGACAAAATCCAAAATCAATTT--TAAAAAAA---ACACCATCGTATGATAAAGGTAA------ACGTTG-TAT-ATTATTCT-AAATT-C--AAATAAAAGG--TGAAAA----AGTAAT---CCAGAAGACGCATTTTCC-A---GC--AATGTCAA--T-AT-TGCCACGAAATAGGTCAGG--AAGAATT---T--TCGGGAA--A------TG-----TG----------------CG------------CAGAC-----A----G-------CAC--------------TAC-AA--A-CCGGA------TT-TAACTAGATTGAAACAAAATGTGTCTTTCTAGTTGCAAATAACGAGCAATTGAT
gi|3 : TATATATG-TT---GTATTT---------AA-TGTGTAAT--AAATAAATACTTTCAAG---ACGACA----ACATT---TAGATGTTAT----------------T------------G-ATGTGTAAACTGTTTAAATGTAACAGCTGAAAC--TCACCTGACCTTGACTAGTCTCCATATTTAATTTGAATGATGG---CGAAGGAAAATA-----GTT-CAATGA---------TG---ATGAAGGGAAATACAATAG-TTCAAGA-CGGGCAAACCATAGTTGCA---T---GAAACAA---GC---ATCCTATAATATAGAAAAGACTTTAC-TTA-TCT-ATTATACTTA---T-TCAAAACAAGAGG--TAAAGA----A-AAAT---CC--AAAATACGTTTTCC-A---AC--AAT------------G-CCGCAAAATAGGTCGCG--GAG---T---TACTCAC-----A------CG-----CG----------------GA------------CAGAC-----G----G-------CACGAAAACAACAACAACAC-AACGC-CCGGATTTTTTTT-TTATTTGAATGAAGCAAAATAA--CCTCAAAGTTGCAAATTGCAAGTAATGG
gi|4 : aTTGGT---AATGATTT---CCA-------TAAATTACTT-AAACGGGTCTAATATTA---GTAAAGGGAAATA-----A-TCCAAGATTGAAGAAGTTAAAAACTC--------AAAATAATTTAG--CATCATATAATGTAGGT----------GTTATT-T-ACTATACTGA---T-T--GAAT-----G--TAAA---------------CCAGA--------TCGCC-A---AC--AATTTCAA--A-AA-TACCAGGAAGTAGATCctttcaatggaaattaagcagaatatattaattaagtgactgt
gi|4 : AGAT-----G----A-------CAA--------------TAG-AA--AATCGAA------TCCTAACTTGATTGAAGCAAACTGTGTCTTCATAGTGTCAAACAACAAGCAATGGATtatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaaaatcgaatcctaacttgattgaagcaaactgtgtcttcatagtgtcaaacaacaagcaatggatttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|5 : ttggtaatgatttccataaattacttaaacgggtctaatattagtaaagggaaataatccaagattgaagaagttaaaaactcaaaataatttagcatcatataatgtaggtgttatttactatactgattgaatgtaaaccagatcgccaacaatttcaaaaataccaggaagtagatctatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaT-A---T-C--AAATAAAA-----AAAAGTTACA-TAATGAACCAGAA--CACATTTTCA-A---TC--AATTTCAA--C-AA-TTCCGCGAAATAGATTGCG--AAGA--T---T----GTGGAGCA------TG-----TG----------------CATCCATACGCAGCCAGAC-----G----G-------CAC--------------TAT-AA--A-TTGAA------AT-TAACTATTTTGAAACAAAAAGTGTCGTCATATTTGCAAATGTTAAGCAGTGGATttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|6 : cataatttgttgTGTTAAACGAAA-ACAAG-GTCAAA--AACATCGCAG-----AAAAAGCATCCCCGCATTAGCT-G-G-TTA-CTGCAATGTTTGCGATCTTCAATGATCATCCTTGTCTTA-AAAA-C-GAA-AGGG---ACTT-TCTATTATTTT-G-ATTT--TTCAGTGCA-TTT----T--GTA-ACATACTTTCAAGTATGC---A----GTA--A--TAAA----ATA---------------T------------G-ATCTCGGAGTTATTCACATGTAACGGCTGAAAA---------------ATTTGTCTCCATA-TTGGT---AATGATTT----CA-------TA-----TTTGGGAAGA---------TG---GTATAAGGAAATA-----T-TCCAAGA-AGAACAAACTCTAAACTTA---T--C-AAATAA---AC--tttaactggtaatggatattggagaaaaacttttttcaaatgattgcgtttctatgcacccccccccctcaaataaaaaccccaatggcttatgtattgatgtattattcactgggtaaaactggtaacttgtttt
gi|7 : -AAATACTTTCA-G---AT---ACCAGGTAT-G--TAAA----ATATGGACATTAGTTACAT------------GTACCTGAACGCTATTCAAATGGAACAGTTGAAAA-ATCACCTGATCTCAATTTGTCTCCATATTTGGT---ACTGATTT---CCA-------TA-----TTT-GGATGA---------TG---GTAAATGGAAAGA-----G-TTCAAGA-TGAA-ATATTCTAAA-TCA---TCATAAAATAatgttttgtattattctaaatttcaaag
gi|7 : tatAT---CCAGAGAACATGTTACCC-A---AC--AAATTCAA--C-A-------C---ATAGATCATG--AAG-------T--TCATGGA--A------TG-----TA----------------CA------------CAAACAGAT-G----G-------CAC--------------TAA-AA--A-CCAGA------TA-TAACTAGAtctaggtatgcattttttatccagagaacatgttacccaacaaattcaacacatagatcatgaagttcatggaatgtacacaaacagatggcactaaaaaccagatataactagagcagatgacaagcaacggatttcaat
gi|8 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacctgaacgctattcaaatggaacagttgaaaaatcacctgatctcaatttgtctccatatttggtactgatttccatatttggatgatggtaaatggaaagagttcaagatgaaatattctaaatcatcataaaatatctaggtatgcatttttt------ACATTA-TAC-ATTATGCTTA---TTC--AAATAAAAGG--TGAAAA----T-CAAA---CCAGgcagatgacaagcaacggatttcaat
gi|8 : tgtCAAACCAGGTTGCT--GAG-------T--TTGTGGA--AAGTATATA-----TT----------------CA------------CAGAT-----G----GACAGTAACAT--------------GAA-AA--A-CATTA------TC-TTACTAGATTAAAACAAAACGTGTCTTCATAGTTGCAAATAACAAACAACAGATgttgctgagtttgtggaaagtatatattcacagatggacagtaacatgaaaaacattatcttactagattaaaacaaaacgtgtcttcatagttgcaaataacaaacaacagatttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
gi|9 : tgtacattatacattatgcttattcaaataaaaggtgaaaatACATATTTTC----------AATTCCAA--C-TA-TGTCGAGAAATAGATTGCG----GA--T---T--TTGTAAG--A------TG-----TGTATTCCTGTATTAGTACA------------CAGAC-----A----G--------ACG-------------TACTAA--A-CTGAA------AG-TAACTAAACTGAAA---AATGCGTCTTCATAATTGAAAATGACAAGTTATGGATttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAAAATCCAAAATGTGTTGCTCAAAGATTACGTCATACAAAGGTGGAAAATGTTAAGTGGTAATGGATATTGGAGAAAAACTTTTTTCAATGATTGCGTTTCTATGCAACCCCCCCCCAATAAAAACCCCAATGGTTTATGTATTGATGTATTCACTGGGTAAAACTGGTAACTTGTTT
Unaligned ( gi|18 ): ATCGGACACTTGGCTTGCGAAGATGGTATGGGCTATATACTGCAGTGTATTCAAACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1 11 444444 1 333333 1 22222 222 2222222222222 1 1111 33333 1 111 44444444444444444444444444 222222222222222222222222222222222222222222222222222222222222 1 111111111 111 111 1111111 11111 222222222 111 1111111 111111 333333333 111 111 555555555555555555555555555555555555555555555555555555555555555555 1111111111 333333333 44444444444444444444444444444444444444444444444444444444444444444 333333333333333333333333333333333333 111111111
lowQualScore : 2222222 3 44 0 000000 3 666666 3 00000 222 1 9999999999999 0 1 3 7777 6 33333 3 0 000 11 00000000000000000000000000 999999999999999999999999999999999999999999999999999999999999 6 2 3 5 111111111 000 000 8888888 22222 5 1 222222222 000 5555555 000000 1 0 3 222222222 000 444 4 555555555555555555555555555555555555555555555555555555555555555555 77 2 0000000000 111111111 3 0 888 99999999999999999999999999999999999999999999999999999999999999999 333333333333333333333333333333333333 88 55 3 0 333333333 2 0 1
lowQualScore : ....... . .. . ...... . ...... . ..... ... . ............. . . . .... . ..... . . ... .. .......................... ............................................................ . . . . ......... ... ... ....... ..... . . ......... ... ....... ...... . . . ......... ... ... . .................................................................. .. . .......... ......... . . ... ................................................................. .................................... .. .. . . ......... . . .
lowQualScore : 7777777 3 77 7 000000 3 000000 3 00000 000 0 0000000000000 7 0 3 3333 7 77777 2 0 222 66 11111111111111111111111111 777777777777777777777777777777777777777777777777777777777777 7 2 2 5 222222222 000 000 6666666 55555 0 7 999999999 000 9999999 111111 7 7 0 999999999 000 555 2 999999999999999999999999999999999999999999999999999999999999999999 00 7 7777777777 111111111 7 7 666 00000000000000000000000000000000000000000000000000000000000000000 888888888888888888888888888888888888 77 00 6 8 444444444 5 5 0
consensus : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--TAAAAA----A-TAAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
Reference ( family-1653 ) : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--TAAAAA----A-TAAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
gi|1 : TCTGTTAAACAAGA-G---ATGT-AGATTAACATTGCAGGAAGAAAAAAA-ATT-----AT-AACCCGTG-TTAGC-GGAATGT--GC-ATTTCCGACCTTTATTTCTGTATAA-CAAAGC-AAAGAA------TTGATATTTT-TTTT-GTATCT--TTT--GAAA-TAT-----------AAATACCC-CAAG--------------TA-CG--TGAA----AT----------------TAGATACGTTATTG-ACCCTTAAGTTATTTTAAGGAAACAGCT--AAAAATCACGTGACCTTGACTTGTTTCCTTATTTGGT---AATAATTT---CCA-------TA-----TTT-GAAAGA---------TG---GTAAAAGGAAATA-----G-TACGAGA-AAAA-------TAAACTC------------TAA---AC------GCAT----TAAGTAA------AC--CA-T-C-ATTA----------------ATAGAATG-------A----A-TAAT---T----------ATTTTCT-TTTTATTGAATTGCAAGTT-GA-T-CC-----ATATGTCACGGCAAAA--TGGGT--TTGTTAA--T------TGATTCATA----------------CA------------CGGAC-----ATTCTG-------CAC--------------TAA-AA--A-T--AA------TC-TAACTAGATTGAAACGTAATGCGTCTTCATTGCTGCAAATAACAAGCAATGGA
gi|10 : GAA------TT-CAACTAGAATGAAACTAAATGTGTTTCCATAGTTGCAAATCACAAGCGATGGATcttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|12 : taaataaaagcaaaatcaccacacaccatcgaagaaagaatgcttgttttgaatttattttattatggatgttgacggttctcaatcagaacaaaattcattagattaattccactcctgatgtaaaA-----TTT-GAACGA---------TGATGGTAAAGGGAGATA-----GGTCTAAGA-A---CAAACTCTAAACTCA---T---AAAATAA---AC--CATCATTTGGTATAGGTAA------GGGTT--------------------------------------AAAA----A-TAA----CAAGAAAACATATTTTTCAA---AC--AATTTCAA--CAAA-G-CTATGAAATAGGATAC----AGA--T---A--TTGTGGA--A------TG-----t
gi|13 : --TAACATAA---AC--CCCTGTATAGCAAAGAAAA------ACATAA-T-TTATTATA-------T-C--AAATAAAAAGGTTACATA----A-TGAA---CCAGAAAACATATTTTCC-A---TC--AATTTCAA--C-AATT-CCGCGAAATAGGTTGCG--AAGA---------TCGTGGA--G------TA-----TG----------------TG------------CAcatacaaccat
gi|14 : TTC-AT-TTT--CTT--TAAACTAC----T--ATG-AT-TACTTTCAAGTA-GT---A----GTATTGCATAAA----AT-----------------------------G-ACCTGTAAGTTATTTAAACGTAAAAGCTG--AAAATCACC--------ACTTGTTCTCATATTTGGT---AGTGGTTT---CCG-------TA-----TTT-
gi|15 : aaaaaaccaaac------TA-----TA----------------CG------------CAGATATAGGG----G-------CAC---------------A--AA--A-GCGCT------TC-TAACTTGATTTAAACAAAATGCGTCTTCATTGTTGCAAGTCACAAGCCATGAAT
gi|16 : aaagcgtatacttagtatacatgtatg------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AT-TATCTAGATTGAATCAGAATGTGAGTT-GTAGTTGTGAATGACAAttgaaaagaaattac
gi|17 : ------------CAGAC-----G----G-------TGC--------------CAC-AA--A-CCGGA------AC-TAACTATATTGAATCAGAATGTGAGTT-GTAGTTGTGAATaaaa
gi|2 : aTTTGTTAAACGGGATATAAATGT-AG-TTAACATTGTA------AAAATA-ATAC----AT-AACC-G-GGTCA-T-GAAA-----GC-------GATCTTCATCTCCCTATGAGCAAA-CCAAAGAAAGCCAATTTATATATT-TTTCTGTATTTCTTTT--TGAA-TTT----TTAAAA-AAATACTTTTAA---------A----GTATC---TAAA----A------------------------------G-AACTGTAAGTCATTTAAACGTAACAGCTGAAAAAATTGCGCGACCTTGACTTGTCTCTATATTTGAT---GATGGTTTGAACCA-------TA-----TAC-TAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGGACAAAATCCAAAATCAATTT--TAAAAAAA---ACACCATCGTATGATAAAGGTAA------ACGTTG-TAT-ATTATTCT-AAATT-C--AAATAAAAGG--TGAAAA----AGTAAT---CCAGAAGACGCATTTTCC-A---GC--AATGTCAA--T-AT-TGCCACGAAATAGGTCAGG--AAGAATT---T--TCGGGAA--A------TG-----TG----------------CG------------CAGAC-----A----G-------CAC--------------TAC-AA--A-CCGGA------TT-TAACTAGATTGAAACAAAATGTGTCTTTCTAGTTGCAAATAACGAGCAATTGAT
gi|3 : TATATATG-TT---GTATTT---------AA-TGTGTAAT--AAATAAATACTTTCAAG---ACGACA----ACATT---TAGATGTTAT----------------T------------G-ATGTGTAAACTGTTTAAATGTAACAGCTGAAAC--TCACCTGACCTTGACTAGTCTCCATATTTAATTTGAATGATGG---CGAAGGAAAATA-----GTT-CAATGA---------TG---ATGAAGGGAAATACAATAG-TTCAAGA-CGGGCAAACCATAGTTGCA---T---GAAACAA---GC---ATCCTATAATATAGAAAAGACTTTAC-TTA-TCT-ATTATACTTA---T-TCAAAACAAGAGG--TAAAGA----A-AAAT---CC--AAAATACGTTTTCC-A---AC--AAT------------G-CCGCAAAATAGGTCGCG--GAG---T---TACTCAC-----A------CG-----CG----------------GA------------CAGAC-----G----G-------CACGAAAACAACAACAACAC-AACGC-CCGGATTTTTTTT-TTATTTGAATGAAGCAAAATAA--CCTCAAAGTTGCAAATTGCAAGTAATGG
gi|4 : aTTGGT---AATGATTT---CCA-------TAAATTACTT-AAACGGGTCTAATATTA---GTAAAGGGAAATA-----A-TCCAAGATTGAAGAAGTTAAAAACTC--------AAAATAATTTAG--CATCATATAATGTAGGT----------GTTATT-T-ACTATACTGA---T-T--GAAT-----G--TAAA---------------CCAGA--------TCGCC-A---AC--AATTTCAA--A-AA-TACCAGGAAGTAGATCctttcaatggaaattaagcagaatatattaattaagtgactgt
gi|4 : AGAT-----G----A-------CAA--------------TAG-AA--AATCGAA------TCCTAACTTGATTGAAGCAAACTGTGTCTTCATAGTGTCAAACAACAAGCAATGGATtatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaaaatcgaatcctaacttgattgaagcaaactgtgtcttcatagtgtcaaacaacaagcaatggatttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|5 : ttggtaatgatttccataaattacttaaacgggtctaatattagtaaagggaaataatccaagattgaagaagttaaaaactcaaaataatttagcatcatataatgtaggtgttatttactatactgattgaatgtaaaccagatcgccaacaatttcaaaaataccaggaagtagatctatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaT-A---T-C--AAATAAAA-----AAAAGTTACA-TAATGAACCAGAA--CACATTTTCA-A---TC--AATTTCAA--C-AA-TTCCGCGAAATAGATTGCG--AAGA--T---T----GTGGAGCA------TG-----TG----------------CATCCATACGCAGCCAGAC-----G----G-------CAC--------------TAT-AA--A-TTGAA------AT-TAACTATTTTGAAACAAAAAGTGTCGTCATATTTGCAAATGTTAAGCAGTGGATttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|6 : cataatttgttgTGTTAAACGAAA-ACAAG-GTCAAA--AACATCGCAG-----AAAAAGCATCCCCGCATTAGCT-G-G-TTA-CTGCAATGTTTGCGATCTTCAATGATCATCCTTGTCTTA-AAAA-C-GAA-AGGG---ACTT-TCTATTATTTT-G-ATTT--TTCAGTGCA-TTT----T--GTA-ACATACTTTCAAGTATGC---A----GTA--A--TAAA----ATA---------------T------------G-ATCTCGGAGTTATTCACATGTAACGGCTGAAAA---------------ATTTGTCTCCATA-TTGGT---AATGATTT----CA-------TA-----TTTGGGAAGA---------TG---GTATAAGGAAATA-----T-TCCAAGA-AGAACAAACTCTAAACTTA---T--C-AAATAA---AC--tttaactggtaatggatattggagaaaaacttttttcaaatgattgcgtttctatgcacccccccccctcaaataaaaaccccaatggcttatgtattgatgtattattcactgggtaaaactggtaacttgtttt
gi|7 : -AAATACTTTCA-G---AT---ACCAGGTAT-G--TAAA----ATATGGACATTAGTTACAT------------GTACCTGAACGCTATTCAAATGGAACAGTTGAAAA-ATCACCTGATCTCAATTTGTCTCCATATTTGGT---ACTGATTT---CCA-------TA-----TTT-GGATGA---------TG---GTAAATGGAAAGA-----G-TTCAAGA-TGAA-ATATTCTAAA-TCA---TCATAAAATAatgttttgtattattctaaatttcaaag
gi|7 : tatAT---CCAGAGAACATGTTACCC-A---AC--AAATTCAA--C-A-------C---ATAGATCATG--AAG-------T--TCATGGA--A------TG-----TA----------------CA------------CAAACAGAT-G----G-------CAC--------------TAA-AA--A-CCAGA------TA-TAACTAGAtctaggtatgcattttttatccagagaacatgttacccaacaaattcaacacatagatcatgaagttcatggaatgtacacaaacagatggcactaaaaaccagatataactagagcagatgacaagcaacggatttcaat
gi|8 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacctgaacgctattcaaatggaacagttgaaaaatcacctgatctcaatttgtctccatatttggtactgatttccatatttggatgatggtaaatggaaagagttcaagatgaaatattctaaatcatcataaaatatctaggtatgcatttttt------ACATTA-TAC-ATTATGCTTA---TTC--AAATAAAAGG--TGAAAA----T-CAAA---CCAGgcagatgacaagcaacggatttcaat
gi|8 : tgtCAAACCAGGTTGCT--GAG-------T--TTGTGGA--AAGTATATA-----TT----------------CA------------CAGAT-----G----GACAGTAACAT--------------GAA-AA--A-CATTA------TC-TTACTAGATTAAAACAAAACGTGTCTTCATAGTTGCAAATAACAAACAACAGATgttgctgagtttgtggaaagtatatattcacagatggacagtaacatgaaaaacattatcttactagattaaaacaaaacgtgtcttcatagttgcaaataacaaacaacagatttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
gi|9 : tgtacattatacattatgcttattcaaataaaaggtgaaaatACATATTTTC----------AATTCCAA--C-TA-TGTCGAGAAATAGATTGCG----GA--T---T--TTGTAAG--A------TG-----TGTATTCCTGTATTAGTACA------------CAGAC-----A----G--------ACG-------------TACTAA--A-CTGAA------AG-TAACTAAACTGAAA---AATGCGTCTTCATAATTGAAAATGACAAGTTATGGATttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
blockSeqs : TATAAAT C T G C CCCCGC T GGG CT A TGTTTGCGATCTT G G CCA G AGCCA A A TCT TA CTTTTTGAATTTTTAAAA ATACCAGGTATGTAAAATATGGACATTAGTTACAT T C A A GCGACCTTG TTG GAA AGGAAAA AATTA G C GTCTAATAT ATG CAATAG TTGAAG C C AATTTTA TTT ACC G GACTTTACTTATCTATTATACTTATTCAAAACAAGAGGTAAAGAAAAAT AA T CAAAC CAAAG A A ATTTTGTAAGATGTGTATTCCTGTATTAGTACA GGCACGAAAACAACAACAAC CT CG A TTTTTTTT T C
blockSeqs : ACAAG . A . . AC . GG T C GC T . CG . GG A . TC TA TTCAGTGCATTTTGTA ACGACAACATTTAGATGTTATT . C A A CTGACCTTG . . . . . C . . GG AGGAC A A ATCATA . C A ACGTTGTATATTATTCTAAATTCAAATAAAAGGTGAAAAAGTAAT AA T CATC CAATT G A ATTGTGGAGCATGTGCATCCATACGCAGC GGACAGTAACATG C . . TCC C C
blockSeqs : . . TT T CTTTAAACTACTATG TAGTAGTATTGCATAAAAT . T A . CTGATCTCA . . . . . T . . G CGGGC C T ATA . C G ACATTATACATTATGCTTATTCAAATAAAAGGTGAAAATCAAA AG C CAGC TATTG A G TTTGTGGAAAGTATATATTCA ATAGGGGCAC C . . TT T G
blockSeqs : . A AATGTGTAATAAAT TATGCAGTAATAAAATAT . T A . C . . . . . C . . A AGAAC T C ATG . C A ACATAATTTATTATATCAAATAAAAAGGTTACATAATGAA AA C CAAC AAATA G A AATTTTCGGGAAATGTGCG AGATGGCACT C . . TC T A
blockSeqs : AGTATCTAAAA . T . . . . . . . . A . . T TGAA C C ATC . . A GTTATTTACTATACTGATTGAATGTAAA GA C CAAC CAATT A A ATCGTGGAGTATGTG GGTGCC C . . AT T T
blockSeqs : . . . . . T . . G AC T . A . GGGTTAAAAATAA A T AATC CTATG G G TTACTCACACGCGGA GGTGCC G . . AC A A
blockSeqs : . . . T CAAC CA G . TTCATGGAATGTACA AGCACT T . . TT T G
blockSeqs : . . G . . GACAAT A . . AT T A
blockSeqs : GGCACT A . . TA T G
blockSeqs : AGACGT . . . TC C
blockSeqs : AG
blockSeqCons : CTCGAATTTNTAA************* NGGAC* ATA****** C** AA CANC****** CAATG**** A** GGCGCT******************************
originalCons : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTT--TTT--TGAA-TNT----T--ANA-AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGAACAAACTCTAAACTCA---T--TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--TAAAAA----A-TAAT---CCAGAAAACACATTTTCC-A---AC--AATTTCAA--C-AA-T-CCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC-----G----G-------CAC--------------TAC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
finalCons : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTTCTCGAATTTNTAA-------------AAATACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGANGGAC-AAACTCTAAACTCATA------AAATAA---ACC--ATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--TAAAAA----A-TAAT---CCAGAAAACACATTTTCCANC------AATTTCAACAATG----CCGCGAAATAGGTCGCGA--AGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGACGGCGCT------------------------------AC-AA--A-CCGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAAAATCCAAAATGTGTTGCTCAAAGATTACGTCATACAAAGGTGGAAAATGTTAAGTGGTAATGGATATTGGAGAAAAACTTTTTTCAATGATTGCGTTTCTATGCAACCCCCCCCCAATAAAAACCCCAATGGTTTATGTATTGATGTATTCACTGGGTAAAACTGGTAACTTGTTT
Unaligned ( gi|18 ): ATCGGACACTTGGCTTGCGAAGATGGTATGGGCTATATACTGCAGTGTATTCAAACA
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222 1 11 444444 1 333333 1 22222 222 2222222222222 1 1111 33333 1 111 444444444444444444444 222222222222222222222222222222222222222222222222222222222222 1 111111111 111 111 1111111 11111 222222222 111 1111111 111111 11111 111 111 666666666666666666666666666666666666 111111111111111 1111111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111111111
lowQualScore : 2222222 3 44 0 000000 3 666666 3 00000 222 1 9999999999999 0 1 3 7777 6 33333 3 0 000 0 000000000000000000000 99 999999999999999999999999999999999999999999999999999999999999 6 2 3 5 111111111 000 000 8888888 22222 5 1 222222222 000 5555555 777777 5 0 77 55555 000 444 4 555555555555555555555555555555555555 0 4 8888 555555555555555 77 2 6666666666 66 5 3 0 888 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3 55 3 0 333333333 2 0 1
lowQualScore : ....... . .. . ...... . ...... . ..... ... . ............. . . . .... . ..... . . ... . ..................... .. ............................................................ . . . . ......... ... ... ....... ..... . . ......... ... ....... ...... . . .. ..... ... ... . .................................... . . .... ............... .. . .......... .. . . . ... ......................................................................................................... . .. . . ......... . . .
lowQualScore : 7777777 3 77 7 000000 3 000000 3 00000 000 0 0000000000000 7 0 3 3333 7 77777 2 0 222 8 444444444444444444444 22 777777777777777777777777777777777777777777777777777777777777 7 2 2 5 222222222 000 000 6666666 55555 0 7 999999999 000 9999999 999999 3 7 99 66666 000 555 2 666666666666666666666666666666666666 1 5 0000 333333333333333 00 7 3333333333 11 7 7 7 666 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 6 00 6 8 444444444 5 5 0
consensus : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTTTTT--TGAATTTNTAN-----AAA--TACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-NGAACAAACTCTAAAC--TCA----TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--TAAAAA----A-TAAT---CCAGAAAACACATTTTCC----AN-C-AATTTCAA--CAATGCCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC----G----G-------CGC--------------TAC-AA--AC-CGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
Reference ( family-1653 ) : TCTGTTAAACGAGA-ACAAATGT-AGATTAACATCGCAG-----AAAAAA-ATNC----AT-AACC-G-G-TTA-C-GNAATGT--GC-ATCTCCGATCTTCATCTCCGTATNA-CAAA-C-GAAGAAGG---ATTTATATATT-TTTC-GTATTTCTC---GAATTTNTAA-----AAA--TACTTTCAAG---GC---A----GTATCG--TAAA----AT----------------T------------G-ACCTGTAAGTTATTTAAACGTAACAGCTGAAAAAATCACCTGACCTCGACTTGTCTCCATATTTGGT---AATGATTT---CCA-------TA-----TTT-GAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-NGGACAAACTCTAAAC--TCA----TAAAATAA---AC--CATCGTATAATATAGGTAA------ACGTTA-T-T-ATTATACT-A---T-C--AAATAAAAGG--TAAAAA----A-TAAT---CCAGAAAACACATTTTCC----AN-C-AATTTCAA--CAATGCCGCGAAATAGGTCGCG--AAGA--T---T--TCGTGGA--A------TG-----TG----------------CG------------CAGAC----G----G-------CGC--------------TAC-AA--AC-CGGA------TC-TAACTAGATTGAAACAAAATGCGTCTTCATAGTTGCAAATNACAAGCAATGGAT
gi|1 : TCTGTTAAACAAGA-G---ATGT-AGATTAACATTGCAGGAAGAAAAAAA-ATT-----AT-AACCCGTG-TTAGC-GGAATGT--GC-ATTTCCGACCTTTATTTCTGTATAA-CAAAGC-AAAGAA------TTGATATTTT-TTTT-GTATCTTTT---GAA---ATAT-----AAA--TACCC-CAAG--------------TA-CG--TGAA----AT----------------TAGATACGTTATTG-ACCCTTAAGTTATTTTAAGGAAACAGCT--AAAAATCACGTGACCTTGACTTGTTTCCTTATTTGGT---AATAATTT---CCA-------TA-----TTT-GAAAGA---------TG---GTAAAAGGAAATA-----G-TACGAGA-A----AAA---TAAAC--TC----------TAA---AC------GCAT----TAAGTAA------AC--CA-T-C-ATTA----------------ATAGAATG-------A----A-TAAT---T----------ATTTTCTTTTTAT-TGAATTGCAAGTTGAT-CC-----ATATGTCACGGCAAAA--TGGGT--TTGTTAA--T------TGATTCATA----------------CA------------CGGAC----ATTCTG-------CAC--------------TAA-AA--AT---AA------TC-TAACTAGATTGAAACGTAATGCGTCTTCATTGCTGCAAATAACAAGCAATGGA
gi|10 : GAA------TT-CAACTAGAATGAAACTAAATGTGTTTCCATAGTTGCAAATCACAAGCGATGGATcttcaatagaaattatgcaggtagcacaaaatattagtatacctgatcattgccagattctgccaacaga
gi|12 : taaataaaagcaaaatcaccacacaccatcgaagaaagaatgcttgttttgaatttattttattatggatgttgacggttctcaatcagaacaaaattcattagattaattccactcctgatgtaaaA-----TTT-GAACGA---------TGATGGTAAAGGGAGATA-----GGTCTAAGA----ACAAACTCTAAAC--TCA----TAAAATAA---AC--CATCATTTGGTATAGGTA------------------------------------------AGGG--TTAAAA----A-TAA----CAAGAAAACATATTTTTC----AAAC-AATTTCAA--CAAAGCTATGAAATAGGATAC----AGA--T---A--TTGTGGA--A------TG-----t
gi|13 : ----TAACATAA---AC--CCCTGTATAGCAAAGAAAA------ACATAA-T-TTATTATA-------T-C--AAATAAAAAGGTTACATA----A-TGAA---CCAGAAAACATATTTTCC----AT-C-AATTTCAA--CAATTCCGCGAAATAGGTTGCG--AAGA---------TCGTGGA--G------TA-----TG----------------TG------------CAcatacaaccat
gi|14 : TTC-ATTTTCTTT---AAACTACTAT-----GAT--TACTTTCAAGTA-GT---A----GTATTGCATAAA----AT-----------------------------G-ACCTGTAAGTTATTTAAACGTAAAAGCTG--AAAATCACC--------ACTTGTTCTCATATTTGGT---AGTGGTTT---CCG-------TA-----TTT-
gi|15 : aaaaaaccaaac------TA-----TA----------------CG------------CAGATATA-G----G-------GGC---------------AC-AA--AAGCGCT------TC-TAACTTGATTTAAACAAAATGCGTCTTCATTGTTGCAAGTCACAAGCCATGAAT
gi|16 : aaagcgtatacttagtatacatgtatg------------CAGAC----G----G-------TGC--------------CAC-AA--AC-CGGA------AT-TATCTAGATTGAATCAGAATGTGAGTT-GTAGTTGTGAATGACAAttgaaaagaaattac
gi|17 : ------------CAGAC----G----G-------TGC--------------CAC-AA--AC-CGGA------AC-TAACTATATTGAATCAGAATGTGAGTT-GTAGTTGTGAATaaaa
gi|2 : aTTTGTTAAACGGGATATAAATGT-AG-TTAACATTGTA------AAAATA-ATAC----AT-AACC-G-GGTCA-T-GAAA-----GC-------GATCTTCATCTCCCTATGAGCAAA-CCAAAGAAAGCCAATTTATATATT-TTTCTGTATTTCTTTTTGAATTTTTAA-----AAAAATACTTTTAA---------A----GTATC---TAAA----A------------------------------G-AACTGTAAGTCATTTAAACGTAACAGCTGAAAAAATTGCGCGACCTTGACTTGTCTCTATATTTGAT---GATGGTTTGAACCA-------TA-----TAC-TAACGA---------TG---GTAAAGGGAAATA-----G-TCCAAGA-AGGACAAAATCCAAAA--TCAATTTTAAAAAAA---ACACCATCGTATGATAAAGGTAA------ACGTTG-TAT-ATTATTCT-AAATT-C--AAATAAAAGG--TGAAAA----AGTAAT---CCAGAAGACGCATTTTCC----AG-C-AATGTCAA--TATTGCCACGAAATAGGTCAGG--AAGAATT---T--TCGGGAA--A------TG-----TG----------------CG------------CAGAC----A----G-------CAC--------------TAC-AA--AC-CGGA------TT-TAACTAGATTGAAACAAAATGTGTCTTTCTAGTTGCAAATAACGAGCAATTGAT
gi|3 : TATATATG-TT---GTATTT-------AATGTGTAATAAATAAA--TACTTTCAAG---ACGACA----ACATT---TAGATGTTAT----------------T------------G-ATGTGTAAACTGTTTAAATGTAACAGCTGAAAC--TCACCTGACCTTGACTAGTCTCCATATTTAATTTGAATGATGG---CGAAGGAAAATA-----GTT-CAATGA---------TG---ATGAAGGGAAATACAATAG-TTCAAGA-CGGGCAAACCATAGTT--GCA----TGAAACAA---GC---ATCCTATAATATAGAAAAGACTTTAC-TTA-TCT-ATTATACTTA---T-TCAAAACAAGAGG--TAAAGA----A-AAAT---CCA--AAATACGTTTTCC----A-----------A--CAATGCCGCAAAATAGGTCGCG--GAG---T---TACTCAC-----A------CG-----CG----------------GA------------CAGAC----G----G-------CACGAAAACAACAACAACAC-AACGCC-CGGATTTTTTTT-TTATTTGAATGAAGCAAAATAA--CCTCAAAGTTGCAAATTGCAAGTAATGG
gi|4 : aTTGGT---AATGATTT---CCA-------TAAATTACTT-AAACGGGTCTAATATTA---GTAAAGGGAAATA-----A-TCCAAGATTGAAGAAGTTAAAAAC--TC------AAAATAATTTAG--CATCATATAATGTAGGT----------GTTATT-T-ACTATACTGA---T-T--GAAT-----G--TAAA---------------CCAGA--------TCGCC----AA-C-AATTTCAA--AAATACCAGGAAGTAGATCctttcaatggaaattaagcagaatatattaattaagtgactgt
gi|4 : -AA--AT-CGAA------TCCTAACTTGATTGAAGCAAACTGTGTCTTCATAGTGTCAAACAACAAGCAATGGATtatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaaaatcgaatcctaacttgattgaagcaaactgtgtcttcatagtgtcaaacaacaagcaatggatttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|5 : ttggtaatgatttccataaattacttaaacgggtctaatattagtaaagggaaataatccaagattgaagaagttaaaaactcaaaataatttagcatcatataatgtaggtgttatttactatactgattgaatgtaaaccagatcgccaacaatttcaaaaataccaggaagtagatctatcttctagttcatgaaatgtatatatacatttacatgtactcatagattaagatgacaatagaT-A---T-C--AAATAAAA-----AAAAGTTACA-TAATGAACCAGAA--CACATTTTCA----AT-C-AATTTCAA--CAATTCCGCGAAATAGATTGCG--AAGA--T---T----GTGGAGCA------TG-----TG----------------CATCCATACGCAGCCAGAC----G----G-------CAC--------------TAT-AA--AT-TGAA------AT-TAACTATTTTGAAACAAAAAGTGTCGTCATATTTGCAAATGTTAAGCAGTGGATttcaataaatgaattggacatgtacacctattttttataggtgtatatat
gi|6 : cataatttgttgTGTTAAACGAAA-ACAAG-GTCAAA--AACATCGCAG-----AAAAAGCATCCCCGCATTAGCT-G-G-TTA-CTGCAATGTTTGCGATCTTCAATGATCATCCTTGTCTTA-AAAA-C-GAA-AGGG---ACTT-TCTATTATTTT-G-ATTTTTCAGTGCATTTTGTA-----ACA--TACTTTCAAGTATGC---A----GTA--A--TAAA----ATA---------------T------------G-ATCTCGGAGTTATTCACATGTAACGGCTGAAAA---------------ATTTGTCTCCATA-TTGGT---AATGATTT----CA-------TA-----TTTGGGAAGA---------TG---GTATAAGGAAATA-----T-TCCAAGA-AGAACAAACTCTAAAC--TTA----TCAAATAA---AC--tttaactggtaatggatattggagaaaaacttttttcaaatgattgcgtttctatgcacccccccccctcaaataaaaaccccaatggcttatgtattgatgtattattcactgggtaaaactggtaacttgtttt
gi|7 : TAT-----AAA--TACTTTCA-G---AT---ACCAGGTAT-G--TAAA----ATATGGACATTAGTTACAT------------GTACCTGAACGCTATTCAAATGGAACAGTTGAAAA-ATCACCTGATCTCAATTTGTCTCCATATTTGGT---ACTGATTT---CCA-------TA-----TTT-GGATGA---------TG---GTAAATGGAAAGA-----G-TTCAAGA-TGAA-ATATTCTAAATCATCA----TAAAATAatgttttgtattattctaaatttcaaag
gi|7 : AT---CCAGAGAACATGTTACCC----AA-C-AAATTCAA--CA------C---ATAGATCATG--AAG-------T--TCATGGA--A------TG-----TA----------------CA------------CAAACAGATG----G-------CAC--------------TAA-AA--AC-CAGA------TA-TAACTAGAtctaggtatgcattttttatccagagaacatgttacccaacaaattcaacacatagatcatgaagttcatggaatgtacacaaacagatggcactaaaaaccagatataactagagcagatgacaagcaacggatttcaat
gi|8 : tataaatactttcagataccaggtatgtaaaatatggacattagttacatgtacctgaacgctattcaaatggaacagttgaaaaatcacctgatctcaatttgtctccatatttggtactgatttccatatttggatgatggtaaatggaaagagttcaagatgaaatattctaaatcatcataaaatatctaggtatgcatttttt------ACATTA-TAC-ATTATGCTTA---TTC--AAATAAAAGG--TGAAAA----T-CAAA---CCAGgcagatgacaagcaacggatttcaat
gi|8 : tgtCAAACCAGGTTGCT--GAG-------T--TTGTGGA--AAGTATATA-----TT----------------CA------------CAGAT----G----GACAGTAACAT--------------GAA-AA--AC-ATTA------TC-TTACTAGATTAAAACAAAACGTGTCTTCATAGTTGCAAATAACAAACAACAGATgttgctgagtttgtggaaagtatatattcacagatggacagtaacatgaaaaacattatcttactagattaaaacaaaacgtgtcttcatagttgcaaataacaaacaacagatttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
gi|9 : tgtacattatacattatgcttattcaaataaaaggtgaaaatACATATTTTC----------AATTCCAA--CTATGTCGAGAAATAGATTGCG----GA--T---T--TTGTAAG--A------TG-----TGTATTCCTGTATTAGTACA------------CAGAC----A----GA------CG---------------TACTAA--AC-TGAA------AG-TAACTAAACTGAAA---AATGCGTCTTCATAATTGAAAATGACAAGTTATGGATttcaatagaaattaagctgtaaacattcagtgaatgtttaataactacatg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TTTTAAAATCCAAAATGTGTTGCTCAAAGATTACGTCATACAAAGGTGGAAAATGTTAAGTGGTAATGGATATTGGAGAAAAACTTTTTTCAATGATTGCGTTTCTATGCAACCCCCCCCCAATAAAAACCCCAATGGTTTATGTATTGATGTATTCACTGGGTAAAACTGGTAACTTGTTT
Unaligned ( gi|18 ): ATCGGACACTTGGCTTGCGAAGATGGTATGGGCTATATACTGCAGTGTATTCAAACA