lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 111 4444 3333 1111111111111 222222222 11111 11 1111 111 222 22222 1 1111 1 1 1 77777777777777777777777777777777777 1111 11111 111 88888888888888888888888888888888888 222 111111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 1111 1 11 3333333333333 111 222 11 11 11 1 1111 66666666666666 999999999
lowQualScore : 444 4 5 8888 5 0000 1 6666666666666 0 888 5 55 88 0 0 8888 5 1 5 4 77 5 4 333333333 7 44444 11 5 0 4 6 5 77 77 2222 8 111 44 333 55555 3 0 3333 0 0 0 2 5 77777777777777777777777777777777777 2222 66666 6 99 6 111 99999999999999999999999999999999999 6 6 333 6 888888 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 000 5 5 1 1 6666 8 3 0 11 7777777777777 8 777 8 5 555 2 77 5 6 11 8 33 3 0 9999 88888888888888 2 999999999
lowQualScore : ... . . .... . .... . ............. . ... . .. .. . . .... . . . . .. . . ......... . ..... .. . . . . . .. .. .... . ... .. ... ..... . . .... . . . . . ................................... .... ..... . .. . ... ................................... . . ... . ...... ............................................................................................................................................................................................................................................................................ ... . . . . .... . . . .. ............. . ... . . ... . .. . . .. . .. . . .... .............. . .........
lowQualScore : 000 0 7 4444 7 0000 5 4444444444444 8 888 0 11 44 1 4 9999 0 1 0 3 99 7 9 999999999 9 33333 77 7 7 0 7 7 99 99 6666 0 888 55 000 00000 2 0 2222 2 0 0 5 5 44444444444444444444444444444444444 2222 88888 7 22 7 777 77777777777777777777777777777777777 7 7 333 7 888888 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 000 7 7 4 4 6666 0 6 8 00 0000000000000 0 666 0 4 000 2 55 2 7 00 0 55 2 0 8888 00000000000000 5 555555555
consensus : AACGA---CAGANTGTGGTTATTTT-CTG---TA-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAAG-NTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCAAAGCC--GAGC-TCGAGCAAAAATGCC---AATANCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAATCGAGAAC-----CAAAA-TA-AGNTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAG--NA-AC--AGG-TC---GCCAAGCAGGGCAGACC--C--AG-C--AAAC-AAAACA---ATAN-CA----AA-TATA----GCAA-CANT-T---NCG-C-ATTCCGGGTTGACC-GC-AAATGGCCTATTACAGGTCG-------------CCCAGCAGNCA--CACCAG-AGC-AA-ACAN--A--A-CAAT-----NC-TACAAAGN----------TTGGCCATTCCGGGTTGGACCGCAAAATGGCCATTTACTTTT-AT--ACAGG-TCG-CCAAG-AGCAGGGC-----CAAG---C-ACNCAG-CC-AA-A-GC-AAAC-----AACAGA-CA--CA--AGCAAA----TATAAG-ACCATAG-AAAAGGTTGNC--AT--TTCCGGG--TTGA-CCGCAA---A-TGGCCA-TTTACCTTTCA--TCAACAGGT-CGCCAAGCAGGACAGACCCAG--CAAACA------CAACAA-AGC-AT--ACA-AAGT-ATAAGCAGCATAAA-GTTTGCCAGACCGGGTT--GACC-GCAAATGGC-NATTTACCT-TTAA--AATCT-GCCGCATTGGTTTGCTCCGNGTTGATT----GCAA-ACATA
Reference ( gi|4 ) : AACGA---CAGAATGTGGTTATTTT-CTGTTTTA-AATA----CAGCTAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAAG-GTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATGCC---CATACCAG-----TTTCCTCATAAGA-CAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATGGAGGAAATTGAGAAC-----CAAAA-TA-AGTTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAG--GA-AC--AAG-TC---GGCAAGCAGGGCAGACC--C--AG-C--AAAC-AAAACA---ATAT-CA----AA-CACC----GCCA-CAAT-T---GTG-C-ATTCCGGGTTGA-C-GC-AAATGGCCTATTACAGTTGC-------------CCCAGCGGTC---CACCAG-AGC-AA-ATAG--A--A-CAAT-----TC-TATAAAGC----------TTGGACATTCCGTGTTGGACC-CAGAATG--------CTTCTTAT--ACAGG-TCG-CCAAGGAGCAAGGCGTGGGCAAG--GCTACGCAG-CCGAA-AGGCGAAAC-CGA-AACAGAGCA--CA--AGCAAAGAGTTATAAG-ACTATAG-AAGAGGTTGGC--ATGGTTCCGGGGACTGAGCCGCAA---A-TGGCCA-TTTACCTTTCA--TCAACAGGT-CGCCAAGCAGGACAGACCCAG--CAAACA------CAACAA-AGC-AA--ACA-AATT-TTAAGTAGCATAAAGGTTTGCCAGACCGGGTT--GACC-GCAAATGGC-AATTTACCT-TTCA--AATCTAGCTGCATTTGTTTGTTCCGGGTTGATTTCTGGCAACACATA
gi|10 : AACGA---CAGAATGTGGTTATTTTTCTGTTTTA-AATA----AAGCTAAAAAA--T-T-T---CACAAC-TA--TC-T--TT-GAAG-GTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATG-C---AATACCAG-----TTTGCTCATAAGA-TAAAGGCA-TCTATATCTT-TTTCATA-TAGA--TGCTA--TT-----T-AT--AT
gi|12 : tacagtgtagcctgggcagacctcatgacctgaaattgcatgaaaaccgagagcagtatctgcctaacttaaaacataaatttgtttaaaagagaagggagggatggggttttaaatcAACGATGCCAGAATCTGGTTATTTT-CTGAAATA-AATG----CAGCTAAGAA---T-T-T---TACAATGTA--TC-TGTT--GAAG-ATCATGTAGAAAAGGG-AT-T-CGTATGCC-GAGTCCGATGCTACAGCC--GAGC-TCGAGCAAAA-TGCC---AATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TT
gi|15 : aat---CAGATTGTGGTTATTTT-CTG----A-AATA----C--------------T-T---CACAACCTG--TC-TGTTT-GAAG-TTCCTGTAGAAAAGGG-AT-T-TGTATACA-GAACCCGATGCCAAAGCC--GAGC-TCGAGC-AAAATGAC---AATAGCAA-----TTTCCTCATAAGA-TAAAGGCA-TCCATATTAT-AATTGTATTACA--TGC
gi|7 : tgc---CAGATCGTGGTTATTTT-CT----TA-AATAAAAGCAGTCAAAAC---TAT-T---TATTACCTC--TC-TGTTT-GAAA-TGCATGTAGA------------------CC-TAGCTCGATGCCAAAGCC--GACC-TTGAGCA-AAATGCCAATTATAGCAA-----TTTCCTTATAAGA-TAAAG-------ATATTAT-ATTTATG-TAGA--TGCTA--T
gi|16 : caatgcagtctggacaggcaggatgatactccaatgtagcctggataggatggtactacaatgtagtctggacagaagcagaaatcctcatgacctgaaaatccaagaaaaccgggagcagtaacttataacattaaatttggttaaaggagaagttttaaatcaaagatgc---CAGATTTTGGTTATTTT-TTGAAATATAATG----CAGCCAAAGT---T-T-TT--CGTTACCTC--AC-TGTTT-GAAG-TGCATG--AAAAAGAG-GC-TGTGTATACCTGACCCCGATGCCAAGGTT--GGGC-TCAGGCACAT-TGCA---AATAGTGG-----TTTCCTCATAAGA-TAAAGGCA-TCTAT
gi|5 : GAATGTGGTTATTTT-CTG----A-AATAATG-CAGCTAAAAA---T-T-TGTCCACA-CCTA--TC-TGTTTTGGAG-ATCATGTAGAAAAGGG-ATCT-TGTATGCC-GAGCCCGATGCTACAGCCCGAAGC-TCGAGCAAAA-TACA---CATACCAG-----TTTCCTCATAAGAATAAAGGCA-T-TATATCTTTATTTATA-TAGA--TGCTA--TTA-T-CT-ATTAATG-AGGAAAT-GAGAAC-----CAAAA-TA-A-TTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATTAA--T-AA-AAGCAGCAGG-AC--AGGTTC---GCCAAGCA-GGCAGACC--CAGAG-C--AAACAAAAACA---ATCA-CA----AAGCA-A----GCAA-CATT-T---TGG-C-ATTCCGGGTTGACC-GC-AAATG--CTA-TACAGGTCG-------------CCCAGCAG
gi|1 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgcTATTTT-TTG----A-AATATATGCAGTCAAGGAGTTT-T-C---CGTTACCTACATCATGTTT-GAATTGCCATGAAAAAGAGGCTGC-T-GGTATAC--GAGCCCGACGCCAATGTC--GGGCCTCAAGCACAT-TGCA---AATG--AGGCGTTTTTCCTCATAAGA-TAAAGGCACTCTATATTAT-ATTTATA-TAGAAATGCTAGATTACT-CTTAT--ATAGAGGAAA----GAACAAAAACAAAA-TA-ACATTAAATTTTTTA-TTGATT-GGCGTT-TTGGTCGTGGCATT----T-AATAAACAG--TATACCAAGG-TCGCTGGCCAAC-GGGCAGACC--CA-AG-CAAAAAC-AAACCAGCTATAA-CAGAGTAA-TATA----GCCAGCGATATAAAGCGCC-ATTCCGGGTTGACC-GCGAAATGA-CTA-TACAGTCGCCAAGCAGGGCAGACCCAGCAG-----CACAAC-AACAAA-ATAC--A--A-AAGTAAGCAGC-AATAAAGG----------TTAGAC-TTCCGGGTT-GACCGCAAAATGGCCATTTACCTTTCATA-ACAGG-TCG-CCAAG-----AGGCG-------------ACCCAG-C----------AAAC---ATAACAGCATA--CATCAG--------TATAAGCATCAT----AAAGGTTTGCCAAT-----CGGG--TTGACCGGCAA---G-TGGCTA-TTT-CCTTTg
gi|22 : atgatctgaaaatgcatgaaaaccaagagcagtatctttctagcttaagacattaatgttatctcaacgggaagggaggcgggtttataatcaaggatgccaagaattttgctcATA----CAGTCAAACA---T-TGT---CACAATC----------------A-GTC-TGTAGAAAAGGG-AT-T-TGTATACC-GAGCCCGATGCaaatatgtttaactgttaaattgtgaatttccaaattgaacaagcaacagtattagcagcccacgtaaagcacagtatacaatcaagcagttatgtttttgttccaggattgacctgcgaaacattgcaccaaaatattaacacttctcaaatatcaatcatcttcagagttcaatgttttgcaatcaatcaaaaacctacagtcagcatcacaaatcttgcatatcagtgaatggatggcgctaatgccacatgaccaagaactgaaagttcaaggtcacacccacatatgggagccccatttcccacttgaccaaacaacgaccaccacctttttacttaagcggttgtcaggaagcacggattcaacacctcatctgtaaaatactcaaccctgtatgtttgttcaaaaaatatggaattacataagaagggtgaggtgcaccttatcactatacaaagaattggtcaatgttttaacaatgtctggaatgctgaaataaagcctctctaactgcagtaccctacactctgtcgcccattaaatcgtgcacgaggttacatagcccatatgtcttaagaaaattgaaagatacaagactaaattgttgaccaaatggtatttaagacaactcagtaatcccataaggtcttatggcttcattattgttaaggaacaatgtacacttggtcccctaaataattcagcaagaagtcagggtattccatcccacttgattaagtataaaac
gi|13 : TTGATA-TAAA--TCCTG--TTA-T-CT-AT--ATAGAGAGAAACAAAAAC-----T-AAA-TACAGTTTAATTGTTATA-TCGGTT-GGCATTGTTGG-CTTGGCATT-A----------------------------------GAGCAGTGCAAACC--C--AG-C--AAAC-ACAACA---GCATACA----AA-c
gi|2 : ggattgagtaattgatgatcagA--TTA-TACT-A---ATAGAGGAAATTGAGAAC-----CAAAAATA-AGGTTAATTCTTTTAATCGATTTGGCGTTGTTGG-CGTGGCATT-AAATGAA-AAGCAG--CA-AC--AGG-TC---GCCAAGCAGG-CAGACC--C--AGGC--AAAC-AAAACA---ATAC-AA----AG-TATA----AGAA-C-AT-T----TG-C-A-TCTGGGTTGA-C-GC-AAATAGCCTA-TACAGGTCG-------------CCCAGCAGGCAGAC-CCAG--GC-AA-ACAC--A--A-CAAA-----GCATACAAA------------TTGG-CATTCCGGGTT-GACC-CCAAATG--------AT-----T--ACAGGCTCGACCAA--AGCAGGG--------AG--AC----CAG-C--AA-A----AAAC-----AAC--ATCA--C---AGCAA-----TATAAG---CATAG-A--AAGTTGCC--A---TTCCGGG--TTGA-CAGCAAATGA-TGGCCATTTTACCTTTTAAGTCAACAGGT-CGCCAAGC--GACAGACCCAG--CAAACA------CAAC-A-AGCAAA--ACA-AATTATAAAGTAGCATAAA---TTG-CAGACCGGGTTTAAACC-GAAAATGGCAAATTTACTTATTAA--AATCTTGCCGCATTGGTTTGTTCCGGGTTGATT-----CAA-ACATAgtgtaagaagcaaaatctgttgaccgat
gi|6 : tatgaaa-AC--AGG-TC---GTCAAGCAAA-CACAACAAC--AG-C--AAAC-AAAG------TAT--A----AA-CATA----G--A-AAGG-T---TTG-CCATTCCGGGTTGATC-GC-AAATGGCCATTTACgtaccaaaatatttacacttaaaaatatcaatcactcttcacagttcaatcaagcaatcactctcagttcaatgtttgcaatcatactaaaacaaacagtcttgcagccacaaaaaatgtcactatcagtggaatggatgccgcaaatgcccatggaccaggaatgaaagtcaccccacacacagggagccccagatccactggaccacgaccaacccatttgataatctattcccaacagagggtgtcagggaacacaatctacaccacacgtcactgttgaaacccccctgctatccccttgttatatgttaaaaacagttgagcgaggtgtaattatcaccaggacaaaagttgatctagtcaataatgagaccctaagcttaatatataagcccttcctaacagcagtaccttgcaggtcgctgccctataaaccaggtatgtgccctctccatgcgccatatctaccgaaatcataagatccacgttagccaaatttgaaacaaatgagttgtcgttaagtagagcaggttttgtacttggcttgcccctttgttttgctatggatttttgaaatgattaatatgggttgcccaaatcataaccccacaaggaggatggatatccctccaactagcaagtagaaaacc
gi|6 : agcaaacaaaacaatatacagtattataagcaacatttggcattccgggctgacagcaaatagctat--AG-C--AAAC-AAAACA---ATAT-AC----AG-TATTATAAGCAA-CATT-T---G-G-C-ATTCCGGGCTGA-CAGC-AAATAGC-TAT-ACAGGTCG-------------TCAAGCAAACA--CAACAACAGC-AA-ACAA--AGTA-TAAA-----CA-TAGAAAGG----------TTTGCCATTCCGGGTTGATCG-CA-AATGGCCATTTACCTTTTATCAACAGA-TAG-CCAAG---CA------GGACAAA--CCCA-GCAA-AC-AA-ATGCACAAC-----AACAG------CA--TGCAGA---TTATAAGTAGCATAA-AGGA--TTGCC--A-GA--CCGGG--TTGA-TCGAAA---A-TGGCAA-TTTACCTTTcttttatcaacagatagccaagcaggacaaacccagcaaacaaatgcacaacaacagcatgcagattataagtagcataaaggattgccagaccgggttgatcgaaaatggcaatttacctttaaaatctgctccgtgttgattgcaaacatagtaccaaaatatttacactttaaaaatattaatcactcttcacagtcctatcaatcaatcaatcaatcaatcagtccacagttcaatcaatttcagttcaatgttttgcaatcatacatgtacctaaaacaaacagtctacagcacaaaatttgatacatcagtggaatgaatgggcgcatgtggagccacgtgaccaggaactg
gi|21 : -C-ATTCC-GGTTGA-CTGC-AAATGACC-ATTaaaatctgctccgtgttgattgcaaacatagtaccaaaatatttacactttaaaaatattaatcactcttcacagtcctatcaatcaatcaatcaatcaatcagtccacagttcaatcaatttcagttcaatgttttgcaatcatacatgtacctaaaacaaacagtctacagcacaaaatttgatacatcagtggaatgaatgggcgcatgtggagccacgtgaccaggaactg
gi|1 : aacataaatgttagcCCAGCTAT-----AACAG-AGT-AATATAGCCA--G-CGAT---------ATAAAGC-------------GCCATTCCGGGTTG-ACCGCGAAATGA-------CT----AT--ACAG--TCG-CCAAG---CAGGGC-------AG-----ACCCAG-C------AGCACAAC-----AACAAAATA--CA--A---AAG-----TAAG--CAGCAA-TAAAGGTTAG---AC--TTCCGGG--TTGA-CCGCAA---AATGGCCA-TTTACCTTTCA--T-AACAGGT-CGCCAAG-AGG-C-GACCCAG--CAAACA------TAACA---GC-AT--ACATCAGT-ATAAGCATCATAAAGGTTTGCCA-ATCGGGTT--GACCGGCAAGTGGC-TATTT-CCT-TT-A--AATtatctttcagcaacctatcattgc
gi|5 : atgatctgaaaatgcatgaaaaccaagagcagtatctttctagcttaagacattaatgttatctcaacgggaagggaggcgggtttataatcaaggatgccaagaattttgctctattttttgaaatatatgcagtcaaggagttttccgttacctacatcatgtttgaattgccatgaaaaagaggctgctggtatacgagcccgacgccaatgtcgggcctcaagcacattgcaaatgaggcgtttttcctcataagataaaggcactctatattatatttatatagaaatgctagattactcttatatagaggaaagaacaaaaacaaaataacattaaattttttattgattggcgttttggtcgtggcatttaataaacagtataccaaggtcgctggccaacgggcagacccaagcaaaaacaaaCCAG-AGC-AA-ACAA--A--AACAAT-----C---ACAAAGCAAGCAACATTTTGG-CATTCCGGGTTG-ACCGCA-AATG--------CT----AT--ACAGG-TCG-CCCAGCAGatgtttaactgttaaattgtgaatttccaaattgaacaagcaacagtattagcagcccacgtaaagcacagtatacaatcaagcagttatgtttttgttccaggattgacctgcgaaacattgcaccaaaatattaacacttctcaaatatcaatcatcttcagagttcaatgttttgcaatcaatcaaaaacctacagtcagcatcacaaatcttgcatatcagtgaatggatggcgctaatgccacatgaccaagaactgaaagttcaaggtcacacccacatatgggagccccatttcccacttgaccaaacaacgaccaccacctttttacttaagcggttgtcaggaagcacggattcaacacctcatctgtaaaatactcaaccctgtatgtttgttcaaaaaatatggaattacataagaagggtgaggtgcaccttatcactatacaaagaattggtcaatgttttaacaatgtctggaatgctgaaataaagcctctctaactgcagtaccctacactctgtcgcccattaaatcgtgcacgaggttacatagcccatatgtcttaagaaaattgaaagatacaagactaaattgttgaccaaatggtatttaagacaactcagtaatcccataaggtcttatggcttcattattgttaaggaacaatgtacacttggtcccctaaataattcagcaagaagtcagggtattccatcccacttgattaagtataaaac
gi|6 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgcgaatgtggttattttctgaaataatgcagctaaaaatttgtccacacctatctgttttggagatcatgtagaaaagggatcttgtatgccgagcccgatgctacagcccgaagctcgagcaaaatacacataccagtttcctcataagaataaaggcattatatctttatttatatagatgctattatctattaatgaggaaatgagaaccaaaataatttaattcttttattgattggcgttgttggtcgtggcattaataaaagcagcaggacaggttcgccaagcaggcagacGCAAATAGCTATACAGGTCGTC-AAGC-AAACACAACAACAG------CA--AACAAAG---TATAA--AC-ATAG-AAAGGTTTGCC--AT---TCCGGG--TTGA-TCGCAA---A-TGGCCA-TTTACCTTTTA--TCAACAGAT-AGCCAAGCAGGACAAACCCAG--CAAACAAATGCACAACAACAGC-AT--GCA-GATT-ATAAGTAGCATAAAGGATTGCCAGACCGGGTT--GATC-GAAAATGGC-AATTTACCT-TTAA--AATC--------------TGCTCCGTGTTGATT----GCAA-ACATAg
gi|5 : agcaaacaaaacaatatacagtattataagcaacatttggcattccgggctgacaG-CCAAGCAGGC-AGAC-C-----CAGAGCAAACA--A--AAACAATCACAAA-GC-A-AGCAACATTTTGGC--AT---TCCGGG--TTGA-CCGCAA---A-T-GCTA-T---------------ACAGGT-CGCCCAGCAGGgtaccaaaatatttacactttaaaaatattaatcactcttcacagtcctatcaatcaatcaatcaatcaatcagtccacagttcaatcaatttcagttcaatgttttgcaatcatacatgtacctaaaacaaacagtctacagcacaaaatttgatacatcagtggaatgaatgggcgcatgtggagccacgtgaccaggaactg
gi|21 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgcgaatgtggttattttctgaaataatgcagctaaaaatttgtccacacctatctgttttggagatcatgtagaaaagggatcttgtatgccgagcccgatgctacagcccgaagctcgagcaaaatacacataccagtttcctcataagaataaaggcattatatctttatttatatagatgctattatctattaatgaggaaatgagaaccaaaataatttaattcttttattgattggcgttgttggtcgtggcattaataaaagcagcaggacaggttcTTCCGG---TTGA-CTGCAA---A-TGACCA-TTTATCTTTCA--GCAAC
gi|5 : aacataaatgttagccaACAGGTTCGCCAAGCAGG-CAGACCCAGAGCAAACA----------AA-AAC-AATCACA-AAGC---AAGCAACAT-----TTTGGCATTCCGGGTT--GACC-GCAAATGctatcattgc
gi|13 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgcgaatgtggttattttctgaaataatgcagctaaaaatttgtccacacctatctgttttggagatcatgtagaaaagggatcttgtatgccgagcccgatgctacagcccgaagctcgagcaaaatacacataccagtttcctcataagaataaaggcattatatctttatttatatagatgctattatctattaatgaggaaatgagaaccaaaataatttaattcttttattgattggcgttgttggtcgtggcattaataaaagcagcaggAGCAGTGCAAACCCAG--CAAACA------CAAC---AGC-AT--ACA-AAGT-GTAAGAAGCA-AAA--TCTGTT-GACCGctatacaggtcgcccagcagg
gi|21 : ggattgagtaattgatgatcagttgatataaatcctgttatctatatagagagaaacaaaaactaaatacagtttaattgttatatcggttggcattgttggcttggcattagAACATAAATGTTAGCCATTCCGG-TT--GACT-GCAAATGAC-CATTTATCT-TTCAGCAACCTAat
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): TCTTAGCAGGGGTGAGGTGCACCTTATCATTAGACAAGAATTGGTCAATGTTTCTAATGAGGTCCGGATGCTTGATATAAGCCCCTCTTAACTGCAGTACCCTACACTCTGTCGCCCTATTAAATCGTTCACGAGTTTCCATAGCCATATTGTCTTCAGAAAATCTATAACATCTCGAGGCAAAATTTGGGACCAAATGAGTGTATTAAGACACTCAGCGATTTCCATAAGGTCTTGTTTCATTTTTGTTATTAATGAACAATGGTACAGTTGGGTCCCCTAAATAATTTCCCCACAATGAACAAAAAGTCAGGGTATCCCCCCTCTTAGTTAAGTATAAAACCTTTTCCTTAAATGTATAAAATTTAGACCTGAATAGCCTTGCCACCATAGTTCTATGCCTAACCTACCACACCTAAATGTACCCCCATGCCCAAGTAGGGCTGCCTGAAATGCATGCTTAATTACTCATGACCCAACACACTTAGGAAAGTATAAATTACAAACAAATAGGACACCGAATATGTGACTTGAAAACCTGTGACTTCCATCTGCTTGTTTCCCTAACGGTATCAGGATCACATCCTTGTTGGTAAGCAGAAATAGCAGCTCCTATTCTGAATGAATTCGACTTGTATCTACCACTCCTAAACCTAGTAGGTTTGTAGCTATATGCAAAACAGATGTGAACTGATACCTTGTTAATGGACTATAGTCAAAATGACAAAACAATAGCCCACTGACCATGGGTCTAACAGCCAGTAACTCCAACATGAATCTAACTGGGCACTGTGAACTATATACTTTGTCAATGCTAATGTTTAC
Unaligned ( gi|8 ): CGGGGTAGAATTTGGGACCATATTAGTGTGGCTTGTGGAAAATGGCCCATAATTTCCGTCAAATTCTTCCTAACTTTTGCAATGAGACGAAATACATGTAAATCCAATGAATAAAAATTGGACCCAATGCCATTACCACCACAATGGATAAGTATAAAATCTAGGGCCTTTTCATATAAAAGTTTTTTCTTTAGGTCAGCAACTTTCATACCCGAGTAACCCTGTCACTATAATGTCAATCCTACTCTTTCCGAGCCAAGGTTGACCCCATCAGGTCTAGTAAATGTTTGCATGAATGCTCGTTTGATTGAAGATCAAGAACCCACACA
Unaligned ( gi|9 ): GAGGACACCGAATGTAAGAATTGTATGAATTTGATTTCCATCGACCAGCTTCCATTATACTTTCTCCCAGGCATCCTGCTTCAAATGCCAGCAGTAGCCTTCCTATTAAATGAGTGAGCCCTATATCTATCGCTTCCTTCAACTGATTTTAACACTTTATCCAAACTTGTGAAAAATGATAACTGGTCAATGGCTGTCACTCGACATGAACAAGTAATGACCCTGAACGTTTAAGGCCTCATGGAAAGAAACTTTTTATAAATTACTAACTGGGCAATGTAATATTGTTAACTTGATCAATGCAGAAGATTTACCCCC
Unaligned ( gi|11 ): TTCTAAAATATCAATCACTCTTCAACGTGTAATGTTTTGCAATCAATCAAATAATGAATAAACCTACAGTCAGCATCACAAACTTGACATATCAGTGGAATGGATGGGCGCTAATGCCAAATGACCAAGAACTGAAAGTTCGAGGTCATCCCACATATGGGGAGCCCCATTCCTCTGGACCACGACCAACCACCTTAATTTATTATCTTAGCAGGGGT
Unaligned ( gi|14 ): AGATTCACGTGGTAAATGGGACCAAATGAGTTTGTATAAGGTTGAAGCTCGGTTATTTTCTCAGGGCTTTGTCCCATTATAATTTGGATCCCCAAATCACTATCCCCACAATGAAGTTGGGATAACCCTCCAACTTTGCCAAGTATAAAACTTTTCTGCTACTAATCC
Unaligned ( gi|17 ): AGCCCCTCCTTACACAGTACCTTTGCAGGTCGGTGCTCTATTAAACCGTTCATGTGCCCTCTTCATAGCCATGTCTATAGGAAATCACAAGATCCACGTAGCAAATTTGGCACCAACTGAG
Unaligned ( gi|18 ): ATCTATCGCAACAGAGGGTACCGGGAAACACAAATCCACACTGTACCCACTGTTGACTGTTGAAATACTCAAGGCACCCCCCACCTCACCTGTATATAGTTGAAACATTTGAG
Unaligned ( gi|19 ): CCAATGTAGTCTAGACAGGATGACACACATTGTAGCCTGAATGGGAAGATACTCCAATGTAGCCTGGACAGGGTAATACTCCAATGTAGCCTGTACAAGATGATA
Unaligned ( gi|20 ): AAAGGACATCAAATATACGACTTGTATACTTTTGATTTCCAGCGCCCAGCTTCCATAATGGTTTCTGGGGAACATCCAGCTATATCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 4444444 2222 111 111 1 11111 1111 1 222222 222222 222 11 11 222 1111 1 3333333 1 1 1 11 2 1 1111 1 2222 11 77777777777777777777777777777777 222 11 1 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 333 22222 11 111 11 222222 222 1 1 2222 11 11 1 333333333333 33333 1
lowQualScore : 111 1 5 4444444 5 6666 222 4 4 222 666 4 4 66 77 5555 4 4 3 66 5 9 2 888 5 22222 5 5 1 5 5 66 66 888 6 99 3 8888 44 8 8 66 8 8 0 888888 8 3 000000 8 111 99 8 11 8 555 1 7777 0 1 5555555 0 3 5 0 55 7 2 0 1 8888 0 1111 1 33 77777777777777777777777777777777 000 77 5 3 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 222 3 3 8 8 1 11111 11 8 8 444 8 0 33 3 888888 222 0 4 8 1 0 8 3 9999 6 3 88 6 44 3 444444444444 0 1 55555 3
lowQualScore : ... . . ....... . .... ... . . ... ... . . .. .. .... . . . .. . . . ... . ..... . . . . . .. .. ... . .. . .... .. . . .. . . . ...... . . ...... . ... .. . .. . ... . .... . . ....... . . . . .. . . . . .... . .... . .. ................................ ... .. . . .................................................................................................... ... . . . . . ..... .. . . ... . . .. . ...... ... . . . . . . . .... . . .. . .. . ............ . . ..... .
lowQualScore : 777 0 0 4444444 0 7777 222 4 4 222 888 4 4 11 11 8888 4 4 0 99 0 4 6 888 9 55555 0 0 0 7 0 99 99 333 7 22 8 4444 00 0 0 00 0 0 6 666666 0 8 888888 0 000 00 0 00 0 000 0 0000 0 0 8888888 0 2 0 0 22 8 5 0 0 3333 0 2222 0 88 55555555555555555555555555555555 888 55 0 2 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000 2 8 0 0 0 66666 00 0 0 000 0 8 88 2 888888 555 0 0 8 2 0 2 2 5555 5 2 33 7 33 3 777777777777 7 0 00000 3
consensus : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-A-GC--AAAC-AAAACAGC-ATANCA----AATATAG-CAACANT-T---GCG-CATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCA-GGCAGA-CCAG-AGCA----AACAAA--ACAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC-AT----CTT-TTAT-ACAGG-TCG-CCAA-GAGCAGGG------CAAG--C-AC-CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-ANACAAATTAT-AAGTAGCATAAA-GT-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCATT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
Reference ( family-1646 ) : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCAAAGCC--GAGC-TCGAGCAAAAATGCCA---ATANCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGNTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGNA--AC--AGG-TCGCCAAGCA--GGGCAGACCC--A-GC--AAAC-AAAACA---ATANCA----AATATAG-CAACANT-T---NCG-CATTCCGGGTTGACCGC-AAATGGCCTATTACAGGTCGCCCAGCA-GNCACA-CCAG-AGCA----AACANA--ACAA---T-----NC-TACA-------AAGN-----TTGGCCATTCCGGGTTGGACCGCAAAATGGCCATTTA-CTT-TTAT-ACAGG-TCG-CCAA-GAGCAGGGC-----CAAG--C-ACNCAGCC--AAAGC-A-AAC---AACAGA-CACAAGCAAA----TATAAG-ACCATAGAAAAGG-TT-GNCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-ATACAAAGTAT-AAGCAGCATAAA-GT-TTGCCAGACCGGGTT--GACCGCAAATGGC-NATTTACCT-TTAAAATC-T-GCCGCATTGGTTTGCTCCGNGTTGATT----GCAA-ACATA
gi|1 : TATTTT-TTG-------A-AATATATGCAGTCAAGGAGTTT-T-C---CGTTACCTACATCATGTTT-GAATTGC-CATGAAAAAGAGGCTGC-T-GGTATAC--GAGCCCGACGCCAATGTC--GGGCCTCAAGCACAT-TGCAA---ATG--AGGCGTTTTTCCTCATAAGA-TAAAGGCACTCTATATTAT-ATTTATA-TAGAAATGCTAGATTACT-CTTAT--ATAGAGGAAAGAACAAAAAC-AAAA-TA-ACATTAAATTTTTTA-TTGATT-GGCGTT-TTGGTCGTGGCATT----T-AATAAACAGTAT-ACCAAGG-TCGCTGGCCAACGGGCAGACCCA-A-GCAAAAAC-AAACCAGCTATAACAGAGTAATATAGCCAGCGATATAAAGCGCCATTCCGGGTTGACCGCGAAATGA-CTA-TACA-GTCGCCAAGCAGGGCAGACCCAGCAGCACAACAACAAAATACAAAAGTAAGCAGC-AATA-------AAGG-----TTAGAC-TTCCGGGTT-GACCGCAAAATGGCCATTTACCTT-TCATAACAGG-TCG-CCAA-GAG--------------G--CGACCCAGC----AAAC-ATAAC---AGCATA-CATCAG--------TATAAGCATCAT---AAAGGTTT-GCCAA--T--CGGG--TTGA-CCGGCAA---GTGGCTA-TTT-CCTTT
gi|10 : atgatctgaaaatgcatgaaaaccaagagcagtatctttctagcttaagacattaatgttatctcaacgggaagggaggcgggtttataatcaaggatgccaagaattttgctcAACGA---CAGAATGTGGTTATTTTTCTG---TTTTA-AATA----AAGCTAAAAAA--T-T-T---CACAAC-TA--TC-T--TT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATG-CA---ATACCAG-----TTTGCTCATAAGA-TAAAGGCA-TCTATATCTT-TTTCATA-TAGA--TGCTA--TT-----T-AT--ATaaatatgtttaactgttaaattgtgaatttccaaattgaacaagcaacagtattagcagcccacgtaaagcacagtatacaatcaagcagttatgtttttgttccaggattgacctgcgaaacattgcaccaaaatattaacacttctcaaatatcaatcatcttcagagttcaatgttttgcaatcaatcaaaaacctacagtcagcatcacaaatcttgcatatcagtgaatggatggcgctaatgccacatgaccaagaactgaaagttcaaggtcacacccacatatgggagccccatttcccacttgaccaaacaacgaccaccacctttttacttaagcggttgtcaggaagcacggattcaacacctcatctgtaaaatactcaaccctgtatgtttgttcaaaaaatatggaattacataagaagggtgaggtgcaccttatcactatacaaagaattggtcaatgttttaacaatgtctggaatgctgaaataaagcctctctaactgcagtaccctacactctgtcgcccattaaatcgtgcacgaggttacatagcccatatgtcttaagaaaattgaaagatacaagactaaattgttgaccaaatggtatttaagacaactcagtaatcccataaggtcttatggcttcattattgttaaggaacaatgtacacttggtcccctaaataattcagcaagaagtcagggtattccatcccacttgattaagtataaaac
gi|12 : tacagtgtagcctgggcagacctcatgacctgaaattgcatgaaaaccgagagcagtatctgcctaacttaaaacataaatttgtttaaaagagaagggagggatggggttttaaatcAACGATGCCAGAATCTGGTTATTTT-CTGAAAT---A-AATG----CAGCTAAGAA---T-T-T---TACAATGTA--TC-TGTT--GAA--GATCATGTAGAAAAGGG-AT-T-CGTATGCC-GAGTCCGATGCTACAGCC--GAGC-TCGAGCAAAA-TGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TT
gi|13 : aatTTGATA-TAAA--TCCTG--TTA-T-CT-AT--ATAGAGAGAAA--CAAAAACT-AAA-TACAGTTTAATTGTTATA-TCGGTT-GGCATTGTTGG-CTTGGCATT-A------------------------------GAGCA--GTGCAAACCC--A-GC--AAAC-ACAACAGC-ATACAA----AGTGTA
gi|13 : ggattgagtaattgatgatcagAGCAGTGCAAACCCAGCAAA------CACAAC---AGC-ATACAAAGTGT-AAGAAGC--AAA-AT-CTGTT-GACCGagaagcaaaatctgttgaccgat
gi|15 : ggattgagtaattgatgatcagttgatataaatcctgttatctatatagagagaaacaaaaactaaatacagtttaattgttatatcggttggcattgttggcttggcattag---CAGATTGTGGTTATTTT-CTG-------A-AATA----C--------------T-T---CACAACCTG--TC-TGTTT-GAA--GTTCCTGTAGAAAAGGG-AT-T-TGTATACA-GAACCCGATGCCAAAGCC--GAGC-TCGAGC-AAAATGACA---ATAGCAA-----TTTCCTCATAAGA-TAAAGGCA-TCCATATTAT-AATTGTATTACA--TGCat
gi|16 : tgc---CAGATTTTGGTTATTTT-TTGAAAT---ATAATG----CAGCCAAAGT---T-T-TT--CGTTACCTC--AC-TGTTT-GAA--GTGCATG--AAAAAGAG-GC-TGTGTATACCTGACCCCGATGCCAAGGTT--GGGC-TCAGGC-ACATTGCAA---ATAGTGG-----TTTCCTCATAAGA-TAAAGGCA-TCTAT
gi|2 : A--TTA-TACT-A---ATAGAGGAAAT--TGAGAACCAAAAATA-AGGTTAATTCTTTTAATCGATTTGGCGTTGTTGG-CGTGGCATT-AAATGAA-AAGCAGCA--AC--AGG-TCGCCAAGCA---GGCAGACCC--AGGC--AAAC-AAAACA---ATACAA----AGTATAA-GAACATT-T-----G-CA-TCTGGGTTGA-CGC-AAATAGCCTA-TACAGGTCGCCCAGCA-GGCAGA-CCCA-GGCA----AACACA--ACAA---A-----GCATACA-------AA-------TTGG-CATTCCGGGTT-GACC-CCAAATG---AT-----------T-ACAGGCTCGACCAA--AGCAGGG--------AG----AC-CAG-C--AAA---A-AAC---AACAT--CAC-AGC-AA----TATAAG---CATAGAAA--G-TT-GCCA---TTCCGGG--TTGA-CA-GCAAATGATGGCCATTTTACCTTTTAAGTCAACAGGTCGCCAAGC--GACAGACCCAGCAAA------CACAAC-A-AGCAAAACAAATTATAAAGTAGCATAAA----TTG-CAGACCGGGTTTAAACCGAAAATGGCAAATTTACTTATTAAAATCTT-GCCGCATTGGTTTGTTCCGGGTTGATT-----CAA-ACATA
gi|21 : tatgaaaAAATG-TTAGCCAT--TCC--GG--TTGA-CT-GCAA---ATGACCA-TTTATCTTTCA--GCAACgtaccaaaatatttacacttaaaaatatcaatcactcttcacagttcaatcaagcaatcactctcagttcaatgtttgcaatcatactaaaacaaacagtcttgcagccacaaaaaatgtcactatcagtggaatggatgccgcaaatgcccatggaccaggaatgaaagtcaccccacacacagggagccccagatccactggaccacgaccaacccatttgataatctattcccaacagagggtgtcagggaacacaatctacaccacacgtcactgttgaaacccccctgctatccccttgttatatgttaaaaacagttgagcgaggtgtaattatcaccaggacaaaagttgatctagtcaataatgagaccctaagcttaatatataagcccttcctaacagcagtaccttgcaggtcgctgccctataaaccaggtatgtgccctctccatgcgccatatctaccgaaatcataagatccacgttagccaaatttgaaacaaatgagttgtcgttaagtagagcaggttttgtacttggcttgcccctttgttttgctatggatttttgaaatgattaatatgggttgcccaaatcataaccccacaaggaggatggatatccctccaactagcaagtagaaaacc
gi|22 : aacatATA----CAGTCAAACA---T-TGT---CACAATC---------------A--G-TC-TGTAGAAAAGGG-AT-T-TGTATACC-GAGCCCGATGCCctatcattgc
gi|4 : AACGA---CAGAATGTGGTTATTTT-CTG---TTTTA-AATA----CAGCTAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATGCCC---ATACCAG-----TTTCCTCATAAGA-CAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATGGAGGAAAT--TGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGGA--AC--AAG-TCGGCAAGCA--GGGCAGACCC--A-GC--AAAC-AAAACA---ATATCA----AACACCG-CCACAAT-T---GTG-CATTCCGGGTTGA-CGC-AAATGGCCTATTACAGTTGCCCCAGCG-GTC-CA-CCAG-AGCA----AATAGA--ACAA---T-----TC-TATA-------AAGC-----TTGGACATTCCGTGTTGGACC-CAGAATG---------CTTCTTAT-ACAGG-TCG-CCAAGGAGCAAGGCGTGGGCAAGGCT-ACGCAGCCGAAAGGCGA-AACCGAAACAGAGCACAAGCAAAGAGTTATAAG-ACTATAGAAGAGG-TT-GGCATGGTTCCGGGGACTGAGCC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTTT-AAGTAGCATAAAGGT-TTGCCAGACCGGGTT--GACCGCAAATGGC-AATTTACCT-TTCAAATC-TAGCTGCATTTGTTTGTTCCGGGTTGATTTCTGGCAACACATA
gi|5 : GAATGTGGTTATTTT-CTG-------A-AATAATG-CAGCTAAAAA---T-T-TGTCCACA-CCTA--TC-TGTTTTGGA--GATCATGTAGAAAAGGG-ATCT-TGTATGCC-GAGCCCGATGCTACAGCCCGAAGC-TCGAGCAAAA-TACAC---ATACCAG-----TTTCCTCATAAGAATAAAGGCA-T-TATATCTTTATTTATA-TAGA--TGCTA--TTA-T-CT-ATTAAT-GAGGAAAT---GAGAACCAAAA-TA-A-TTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATTAA--T-AA-AAGCAGCAGGAC--AGGTTCGCCAAGCA---GGCAGACCCAGA-GC--AAACAAAAACA---ATCACA----AAGCAAG-CAACATT-T---TGG-CATTCCGGGTTGACCGC-AAATG--CTA-TACAGGTCGCCCAGCA-G
gi|6 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgc-AGCA----AACAAA--ACAA---T-----A--TACAGTATTATAAGCAACATTTGGC-ATTCCGGGCTG-ACAGCAAA-TAGC------------TAT-ACAGG-TCG-TCAA-G-------------CAAA--C-AC----------------AAC---AACAG----CAAACAAAG---TATAAA---CATAGAAAGGT-TT-GCCAT--T-CCGGG--TTGA-TC-GCAA---ATGGCCA-TTTACCTTTTA--TCAACAGATAGCCAAGCAGGACAAACCCAGCAAACAAATGCACAACAACAGC-ATGCAGATTAT-AAGTAGCATAAA-GGATTGCCAGACCGGGTT--GATCGAAAATGGC-AATTTACCT-TTAAAATC---------------TGCTCCGTGTTGATT----GCAA-ACATAg
gi|7 : ---CAGATCGTGGTTATTTT-CT----T---A-AATAAAAGCAGTCAAAAC---TAT-T---TATTACCTC--TC-TGTTT-GAA--ATGCATGTAGA------------------CC-TAGCTCGATGCCAAAGCC--GACC-TTGAGC-AAAATGCCAATTATAGCAA-----TTTCCTTATAAGA-TAAAG-------ATATTAT-ATTTATG-TAGA--TGCTA--Tgtaccaaaatatttacactttaaaaatattaatcactcttcacagtcctatcaatcaatcaatcaatcaatcagtccacagttcaatcaatttcagttcaatgttttgcaatcatacatgtacctaaaacaaacagtctacagcacaaaatttgatacatcagtggaatgaatgggcgcatgtggagccacgtgaccaggaactg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTTAGCAGGGGTGAGGTGCACCTTATCATTAGACAAGAATTGGTCAATGTTTCTAATGAGGTCCGGATGCTTGATATAAGCCCCTCTTAACTGCAGTACCCTACACTCTGTCGCCCTATTAAATCGTTCACGAGTTTCCATAGCCATATTGTCTTCAGAAAATCTATAACATCTCGAGGCAAAATTTGGGACCAAATGAGTGTATTAAGACACTCAGCGATTTCCATAAGGTCTTGTTTCATTTTTGTTATTAATGAACAATGGTACAGTTGGGTCCCCTAAATAATTTCCCCACAATGAACAAAAAGTCAGGGTATCCCCCCTCTTAGTTAAGTATAAAACCTTTTCCTTAAATGTATAAAATTTAGACCTGAATAGCCTTGCCACCATAGTTCTATGCCTAACCTACCACACCTAAATGTACCCCCATGCCCAAGTAGGGCTGCCTGAAATGCATGCTTAATTACTCATGACCCAACACACTTAGGAAAGTATAAATTACAAACAAATAGGACACCGAATATGTGACTTGAAAACCTGTGACTTCCATCTGCTTGTTTCCCTAACGGTATCAGGATCACATCCTTGTTGGTAAGCAGAAATAGCAGCTCCTATTCTGAATGAATTCGACTTGTATCTACCACTCCTAAACCTAGTAGGTTTGTAGCTATATGCAAAACAGATGTGAACTGATACCTTGTTAATGGACTATAGTCAAAATGACAAAACAATAGCCCACTGACCATGGGTCTAACAGCCAGTAACTCCAACATGAATCTAACTGGGCACTGTGAACTATATACTTTGTCAATGCTAATGTTTAC
Unaligned ( gi|8 ): CGGGGTAGAATTTGGGACCATATTAGTGTGGCTTGTGGAAAATGGCCCATAATTTCCGTCAAATTCTTCCTAACTTTTGCAATGAGACGAAATACATGTAAATCCAATGAATAAAAATTGGACCCAATGCCATTACCACCACAATGGATAAGTATAAAATCTAGGGCCTTTTCATATAAAAGTTTTTTCTTTAGGTCAGCAACTTTCATACCCGAGTAACCCTGTCACTATAATGTCAATCCTACTCTTTCCGAGCCAAGGTTGACCCCATCAGGTCTAGTAAATGTTTGCATGAATGCTCGTTTGATTGAAGATCAAGAACCCACACA
Unaligned ( gi|9 ): GAGGACACCGAATGTAAGAATTGTATGAATTTGATTTCCATCGACCAGCTTCCATTATACTTTCTCCCAGGCATCCTGCTTCAAATGCCAGCAGTAGCCTTCCTATTAAATGAGTGAGCCCTATATCTATCGCTTCCTTCAACTGATTTTAACACTTTATCCAAACTTGTGAAAAATGATAACTGGTCAATGGCTGTCACTCGACATGAACAAGTAATGACCCTGAACGTTTAAGGCCTCATGGAAAGAAACTTTTTATAAATTACTAACTGGGCAATGTAATATTGTTAACTTGATCAATGCAGAAGATTTACCCCC
Unaligned ( gi|11 ): TTCTAAAATATCAATCACTCTTCAACGTGTAATGTTTTGCAATCAATCAAATAATGAATAAACCTACAGTCAGCATCACAAACTTGACATATCAGTGGAATGGATGGGCGCTAATGCCAAATGACCAAGAACTGAAAGTTCGAGGTCATCCCACATATGGGGAGCCCCATTCCTCTGGACCACGACCAACCACCTTAATTTATTATCTTAGCAGGGGT
Unaligned ( gi|14 ): AGATTCACGTGGTAAATGGGACCAAATGAGTTTGTATAAGGTTGAAGCTCGGTTATTTTCTCAGGGCTTTGTCCCATTATAATTTGGATCCCCAAATCACTATCCCCACAATGAAGTTGGGATAACCCTCCAACTTTGCCAAGTATAAAACTTTTCTGCTACTAATCC
Unaligned ( gi|17 ): AGCCCCTCCTTACACAGTACCTTTGCAGGTCGGTGCTCTATTAAACCGTTCATGTGCCCTCTTCATAGCCATGTCTATAGGAAATCACAAGATCCACGTAGCAAATTTGGCACCAACTGAG
Unaligned ( gi|18 ): ATCTATCGCAACAGAGGGTACCGGGAAACACAAATCCACACTGTACCCACTGTTGACTGTTGAAATACTCAAGGCACCCCCCACCTCACCTGTATATAGTTGAAACATTTGAG
Unaligned ( gi|19 ): CCAATGTAGTCTAGACAGGATGACACACATTGTAGCCTGAATGGGAAGATACTCCAATGTAGCCTGGACAGGGTAATACTCCAATGTAGCCTGTACAAGATGATA
Unaligned ( gi|20 ): AAAGGACATCAAATATACGACTTGTATACTTTTGATTTCCAGCGCCCAGCTTCCATAATGGTTTCTGGGGAACATCCAGCTATATCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 111 4444444 2222 111 111 1 11111 1111 1 222222 222222 11 11 11 333 1111111111111 11111111 1 1 1 1111 2222 11 77777777777777777777777777777777 1 11 1 888888888888888 1 1 1 3333333333333333333333333333333333333333 111 33333333333333333 333 22222 11 111 11 333333 1 1 1 4444 11 1 1 111 33333333 33333 1
lowQualScore : 111 1 5 4444444 5 6666 222 4 4 222 666 4 4 66 77 5555 4 4 1 66 5 3 5 888 5 22222 5 5 1 5 5 66 66 888 6 99 3 8888 44 8 8 66 8 8 0 888888 8 3 000000 8 11 88 11 8 333 1 8888888888888 8 1 8 55555555 55 0 6 2 0 8 3 0 7777 1111 0 33 44444444444444444444444444444444 5 3 77 5 3 777777777777777 0 0 0 8888888888888888888888888888888888888888 777 33333333333333333 222 3 3 8 8 11111 11 8 8 444 8 0 33 7 888888 7 3 3 1 3 0000 6 88 3 3 777 22222222 55555 3
lowQualScore : ... . . ....... . .... ... . . ... ... . . .. .. .... . . . .. . . . ... . ..... . . . . . .. .. ... . .. . .... .. . . .. . . . ...... . . ...... . .. .. .. . ... . ............. . . . ........ .. . . . . . . . .... .... . .. ................................ . . .. . . ............... . . . ........................................ ... ................. ... . . . . ..... .. . . ... . . .. . ...... . . . . . .... . .. . . ... ........ ..... .
lowQualScore : 777 0 0 4444444 0 7777 222 4 4 222 888 4 4 11 11 8888 4 4 0 99 0 2 5 888 6 55555 0 0 0 7 0 99 99 333 7 22 8 4444 00 0 0 00 0 0 6 666666 0 2 888888 0 00 66 00 0 000 0 8888888888888 0 0 0 88888888 00 0 5 5 0 8 2 0 7777 2222 8 88 88888888888888888888888888888888 5 2 55 0 2 000000000000000 0 0 0 0000000000000000000000000000000000000000 555 88888888888888888 000 2 8 0 0 66666 00 0 0 000 0 8 88 3 333333 3 3 3 0 3 3333 7 33 3 3 777 33333333 00000 3
consensus : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----AATAT----AGC-AACATT-T---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC-----ACCTT-TTATA-CAGG-TCG-CCAA-GAGCA------GGGCGAG--CAC-CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAA-G--TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
Reference ( family-1646 ) : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----AATAT----AGC-AACANT-T---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC-----ATCTT-TTATA-CAGG-TCG-CCAA-GAGCA------GGGCAAG--CAC-CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-ANACAAATTAT-AAGTAGCATAAA-GT-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
gi|1 : TATTTT-TTG-------A-AATATATGCAGTCAAGGAGTTT-T-C---CGTTACCTACATCATGTTT-GAATTGC-CATGAAAAAGAGGCTGC-T-GGTATAC--GAGCCCGACGCCAATGTC--GGGCCTCAAGCACAT-TGCAA---ATG--AGGCGTTTTTCCTCATAAGA-TAAAGGCACTCTATATTAT-ATTTATA-TAGAAATGCTAGATTACT-CTTAT--ATAGAGGAAAGAACAAAAAC-AAAA-TA-ACATTAAATTTTTTA-TTGATT-GGCGTT-TTGGTCGTGGCATT----T-AATAAACAGTAT-ACCAAGG-TCGCTGGCCAACGGGCAGACCCA-AGCAAAAAC-AAACCAGCTATAACAGAGTAATAT----AGCCAGCGATATAAAGCGCCATTCCGGGTTGACCGCGAAATGAC-TA-TACAG-TCGCCAAGCAGGGCAGACCCAGCAGCACAACAACAAAATACAAAAGTAAGCAGC-AATA-------AAGG-----TTAGAC-TTCCGGGTTG-ACCGCAAAATGGCCATTTACCTT-TCATAACAGG-TCG-CCAA-GA----------GGCGA---C-C-CAGC----AAAC-ATAAC---AGCATA-CAT---C--AG---TATAAGCATCAT---AAAGGTTT-GCCAA--T--CGGG--TTGA-CCGGCAA---GTGGCTA-TTT-CCTTT
gi|10 : atgatctgaaaatgcatgaaaaccaagagcagtatctttctagcttaagacattaatgttatctcaacgggaagggaggcgggtttataatcaaggatgccaagaattttgctcAACGA---CAGAATGTGGTTATTTTTCTG---TTTTA-AATA----AAGCTAAAAAA--T-T-T---CACAAC-TA--TC-T--TT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATG-CA---ATACCAG-----TTTGCTCATAAGA-TAAAGGCA-TCTATATCTT-TTTCATA-TAGA--TGCTA--TT-----T-AT--ATaaatatgtttaactgttaaattgtgaatttccaaattgaacaagcaacagtattagcagcccacgtaaagcacagtatacaatcaagcagttatgtttttgttccaggattgacctgcgaaacattgcaccaaaatattaacacttctcaaatatcaatcatcttcagagttcaatgttttgcaatcaatcaaaaacctacagtcagcatcacaaatcttgcatatcagtgaatggatggcgctaatgccacatgaccaagaactgaaagttcaaggtcacacccacatatgggagccccatttcccacttgaccaaacaacgaccaccacctttttacttaagcggttgtcaggaagcacggattcaacacctcatctgtaaaatactcaaccctgtatgtttgttcaaaaaatatggaattacataagaagggtgaggtgcaccttatcactatacaaagaattggtcaatgttttaacaatgtctggaatgctgaaataaagcctctctaactgcagtaccctacactctgtcgcccattaaatcgtgcacgaggttacatagcccatatgtcttaagaaaattgaaagatacaagactaaattgttgaccaaatggtatttaagacaactcagtaatcccataaggtcttatggcttcattattgttaaggaacaatgtacacttggtcccctaaataattcagcaagaagtcagggtattccatcccacttgattaagtataaaac
gi|12 : tacagtgtagcctgggcagacctcatgacctgaaattgcatgaaaaccgagagcagtatctgcctaacttaaaacataaatttgtttaaaagagaagggagggatggggttttaaatcAACGATGCCAGAATCTGGTTATTTT-CTGAAAT---A-AATG----CAGCTAAGAA---T-T-T---TACAATGTA--TC-TGTT--GAA--GATCATGTAGAAAAGGG-AT-T-CGTATGCC-GAGTCCGATGCTACAGCC--GAGC-TCGAGCAAAA-TGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TT
gi|13 : aatTTGATA-TAAA--TCCTG--TTA-T-CT-AT--ATAGAGAGAAA--CAAAAACT-AAA-TACAGTTTAATTGTTATA-TCGGTT-GGCATTGTTGG-CTTGGCATT-A------------------------------GAGCA--GTGCAAACCC--AGCAAA--C-ACAACAGC-ATACAA----AGTGTAAGAAGC-AAAATC-T---G
gi|15 : ggattgagtaattgatgatcag---CAGATTGTGGTTATTTT-CTG-------A-AATA----C--------------T-T---CACAACCTG--TC-TGTTT-GAA--GTTCCTGTAGAAAAGGG-AT-T-TGTATACA-GAACCCGATGCCAAAGCC--GAGC-TCGAGC-AAAATGACA---ATAGCAA-----TTTCCTCATAAGA-TAAAGGCA-TCCATATTAT-AATTGTATTACA--TGCttgaccgat
gi|16 : tgc---CAGATTTTGGTTATTTT-TTGAAAT---ATAATG----CAGCCAAAGT---T-T-TT--CGTTACCTC--AC-TGTTT-GAA--GTGCATG--AAAAAGAG-GC-TGTGTATACCTGACCCCGATGCCAAGGTT--GGGC-TCAGGCACAT-TGCAA---ATAGTGG-----TTTCCTCATAAGA-TAAAGGCA-TCTAT
gi|2 : A--TTA-TACT-A---ATAGAGGAAAT--TGAGAACCAAAAATA-AGGTTAATTCTTTTAATCGATTTGGCGTTGTTGG-CGTGGCATT-AAATGAA-AAGCAGCA--AC--AGG-TCGCCAAGCA--GG-CAGACCCA-GGCAAA--C-AAAACA---ATACAA----AGTAT----AAG-AACATT-T---GCA----TCTGGGTTGAC-GC-AAATAGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-CA-GGCA----AACACAA--CAA---A-----GCATACA-------AA-------TTGG-CATTCCGGGTT-GACC-CCAAATG-------AT-------TA-CAGGCTCGACCAA--AGCA------GGG--AG---AC-CAG-C--AAA---A-AAC---AACAT--CAC-AGCAA-----TATAAG---CATAGAAA--G-TT-GCCA---TTCCGGG--TTGA-CA-GCAAATGATGGCCATTTTACCTTTTAAGTCAACAGGTCGCCAAGC--GACAGACCCAGCAAA------CACAAC-A-AGCAAAACAAATTATAAAGTAGCATAAA----TTG-CAGACCGGGTTTAAACCGAAAATGGCAAATTTACTTATTAAAATCTT-GCCGCA-TTGGTTTGTTCCGGGTTGATT-----CAA-ACATA
gi|21 : tatgaaaAAATG-TTAGCCAT--TCC--GG--TTGA-CT-GCAA---ATGACCA-TTTATCTTTCA--GCAACgtaccaaaatatttacacttaaaaatatcaatcactcttcacagttcaatcaagcaatcactctcagttcaatgtttgcaatcatactaaaacaaacagtcttgcagccacaaaaaatgtcactatcagtggaatggatgccgcaaatgcccatggaccaggaatgaaagtcaccccacacacagggagccccagatccactggaccacgaccaacccatttgataatctattcccaacagagggtgtcagggaacacaatctacaccacacgtcactgttgaaacccccctgctatccccttgttatatgttaaaaacagttgagcgaggtgtaattatcaccaggacaaaagttgatctagtcaataatgagaccctaagcttaatatataagcccttcctaacagcagtaccttgcaggtcgctgccctataaaccaggtatgtgccctctccatgcgccatatctaccgaaatcataagatccacgttagccaaatttgaaacaaatgagttgtcgttaagtagagcaggttttgtacttggcttgcccctttgttttgctatggatttttgaaatgattaatatgggttgcccaaatcataaccccacaaggaggatggatatccctccaactagcaagtagaaaacc
gi|22 : aacatATA----CAGTCAAACA---T-TGT---CACAATC---------------A--G-TC-TGTAGAAAAGGG-AT-T-TGTATACC-GAGCCCGATGCCctatcattgc
gi|4 : AACGA---CAGAATGTGGTTATTTT-CTG---TTTTA-AATA----CAGCTAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATGCCC---ATACCAG-----TTTCCTCATAAGA-CAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATGGAGGAAAT--TGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGGA--AC--AAG-TCGGCAAGCA--GGGCAGACCC--AGCAAA--C-AAAACA---ATATCA----AACAC----CGC-CACAAT-T---GTGC-ATTCCGGGTTGA-CGC-AAATGGCCTATTACAGTTGCCCCAGC-GG-TCCACC-AG-AGCA----AATAGAA--CAA---T-----TC-TATA-------AAGC-----TTGGACATTCCGTGTTGGACC-CAGAATG---------CTTCTTATA-CAGG-TCG-CCAAGGAGCAAGGCGTGGGCAAGGCTACGCAGCCGAAAGGCGA-AACCGAAACAGAGCACAAGCAAAGAGTTATAAG-ACTATAGAAGAGG-TT-GGCATGGTTCCGGGGACTGAGCC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTTT-AAGTAGCATAAAGGT-TTGCCAGACCGGGTT--GACCGCAAATGGC-AATTTACCT-TTCAAATC-TAGCTGCATTT-GTTTGTTCCGGGTTGATTTCTGGCAACACATA
gi|5 : GAATGTGGTTATTTT-CTG-------A-AATAATG-CAGCTAAAAA---T-T-TGTCCACA-CCTA--TC-TGTTTTGGA--GATCATGTAGAAAAGGG-ATCT-TGTATGCC-GAGCCCGATGCTACAGCCCGAAGC-TCGAGCAAAA-TACAC---ATACCAG-----TTTCCTCATAAGAATAAAGGCA-T-TATATCTTTATTTATA-TAGA--TGCTA--TTA-T-CT-ATTAAT-GAGGAAAT---GAGAACCAAAA-TA-A-TTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATTAA--T-AA-AAGCAGCAGGAC--AGGTTCGCCAAGCA---GGCAGACCCAGAGCAAA--CAAAAACA---ATCACA----AAGCA----AGC-AACATT-T---TGGC-ATTCCGGGTTGACCGC-AAATG--CTA-TACAGGTCGCCCAGCAGG-
gi|6 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgc-AGCA----AACAAAA--CAA---T-----A--TACAGTATTATAAGCAACATTTGG-CATTCCGGGCTG-ACAGCAAA-TAGC------------TATA-CAGG-TCG-TCAA-G-------------CAAA--CAC----------------AAC---AACAG----CAAACAAAG---TATAAA---CATAGAAAGGT-TT-GCCAT--T-CCGGG--TTGA-TC-GCAA---ATGGCCA-TTTACCTTTTA--TCAACAGATAGCCAAGCAGGACAAACCCAGCAAACAAATGCACAACAACAGC-ATGCAGATTAT-AAGTAGCATAAA-GGATTGCCAGACCGGGTT--GATCGAAAATGGC-AATTTACCT-TTAAAATC-T-GC--------------TCCGTGTTGATT----GCAA-ACATA
gi|7 : ---CAGATCGTGGTTATTTT-CT----T---A-AATAAAAGCAGTCAAAAC---TAT-T---TATTACCTC--TC-TGTTT-GAA--ATGCATGTAGA------------------CC-TAGCTCGATGCCAAAGCC--GACC-TTGAGC-AAAATGCCAATTATAGCAA-----TTTCCTTATAAGA-TAAAG-------ATATTAT-ATTTATG-TAGA--TGCTA--Tgtaccaaaatatttacactttaaaaatattaatcactcttcacagtcctatcaatcaatcaatcaatcaatcagtccacagttcaatcaatttcagttcaatgttttgcaatcatacatgtacctaaaacaaacagtctacagcacaaaatttgatacatcagtggaatgaatgggcgcatgtggagccacgtgaccaggaactg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTTAGCAGGGGTGAGGTGCACCTTATCATTAGACAAGAATTGGTCAATGTTTCTAATGAGGTCCGGATGCTTGATATAAGCCCCTCTTAACTGCAGTACCCTACACTCTGTCGCCCTATTAAATCGTTCACGAGTTTCCATAGCCATATTGTCTTCAGAAAATCTATAACATCTCGAGGCAAAATTTGGGACCAAATGAGTGTATTAAGACACTCAGCGATTTCCATAAGGTCTTGTTTCATTTTTGTTATTAATGAACAATGGTACAGTTGGGTCCCCTAAATAATTTCCCCACAATGAACAAAAAGTCAGGGTATCCCCCCTCTTAGTTAAGTATAAAACCTTTTCCTTAAATGTATAAAATTTAGACCTGAATAGCCTTGCCACCATAGTTCTATGCCTAACCTACCACACCTAAATGTACCCCCATGCCCAAGTAGGGCTGCCTGAAATGCATGCTTAATTACTCATGACCCAACACACTTAGGAAAGTATAAATTACAAACAAATAGGACACCGAATATGTGACTTGAAAACCTGTGACTTCCATCTGCTTGTTTCCCTAACGGTATCAGGATCACATCCTTGTTGGTAAGCAGAAATAGCAGCTCCTATTCTGAATGAATTCGACTTGTATCTACCACTCCTAAACCTAGTAGGTTTGTAGCTATATGCAAAACAGATGTGAACTGATACCTTGTTAATGGACTATAGTCAAAATGACAAAACAATAGCCCACTGACCATGGGTCTAACAGCCAGTAACTCCAACATGAATCTAACTGGGCACTGTGAACTATATACTTTGTCAATGCTAATGTTTAC
Unaligned ( gi|8 ): CGGGGTAGAATTTGGGACCATATTAGTGTGGCTTGTGGAAAATGGCCCATAATTTCCGTCAAATTCTTCCTAACTTTTGCAATGAGACGAAATACATGTAAATCCAATGAATAAAAATTGGACCCAATGCCATTACCACCACAATGGATAAGTATAAAATCTAGGGCCTTTTCATATAAAAGTTTTTTCTTTAGGTCAGCAACTTTCATACCCGAGTAACCCTGTCACTATAATGTCAATCCTACTCTTTCCGAGCCAAGGTTGACCCCATCAGGTCTAGTAAATGTTTGCATGAATGCTCGTTTGATTGAAGATCAAGAACCCACACA
Unaligned ( gi|9 ): GAGGACACCGAATGTAAGAATTGTATGAATTTGATTTCCATCGACCAGCTTCCATTATACTTTCTCCCAGGCATCCTGCTTCAAATGCCAGCAGTAGCCTTCCTATTAAATGAGTGAGCCCTATATCTATCGCTTCCTTCAACTGATTTTAACACTTTATCCAAACTTGTGAAAAATGATAACTGGTCAATGGCTGTCACTCGACATGAACAAGTAATGACCCTGAACGTTTAAGGCCTCATGGAAAGAAACTTTTTATAAATTACTAACTGGGCAATGTAATATTGTTAACTTGATCAATGCAGAAGATTTACCCCC
Unaligned ( gi|11 ): TTCTAAAATATCAATCACTCTTCAACGTGTAATGTTTTGCAATCAATCAAATAATGAATAAACCTACAGTCAGCATCACAAACTTGACATATCAGTGGAATGGATGGGCGCTAATGCCAAATGACCAAGAACTGAAAGTTCGAGGTCATCCCACATATGGGGAGCCCCATTCCTCTGGACCACGACCAACCACCTTAATTTATTATCTTAGCAGGGGT
Unaligned ( gi|14 ): AGATTCACGTGGTAAATGGGACCAAATGAGTTTGTATAAGGTTGAAGCTCGGTTATTTTCTCAGGGCTTTGTCCCATTATAATTTGGATCCCCAAATCACTATCCCCACAATGAAGTTGGGATAACCCTCCAACTTTGCCAAGTATAAAACTTTTCTGCTACTAATCC
Unaligned ( gi|17 ): AGCCCCTCCTTACACAGTACCTTTGCAGGTCGGTGCTCTATTAAACCGTTCATGTGCCCTCTTCATAGCCATGTCTATAGGAAATCACAAGATCCACGTAGCAAATTTGGCACCAACTGAG
Unaligned ( gi|18 ): ATCTATCGCAACAGAGGGTACCGGGAAACACAAATCCACACTGTACCCACTGTTGACTGTTGAAATACTCAAGGCACCCCCCACCTCACCTGTATATAGTTGAAACATTTGAG
Unaligned ( gi|19 ): CCAATGTAGTCTAGACAGGATGACACACATTGTAGCCTGAATGGGAAGATACTCCAATGTAGCCTGGACAGGGTAATACTCCAATGTAGCCTGTACAAGATGATA
Unaligned ( gi|20 ): AAAGGACATCAAATATACGACTTGTATACTTTTGATTTCCAGCGCCCAGCTTCCATAATGGTTTCTGGGGAACATCCAGCTATATCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 111 4444444 2222 111 111 1 11111 1111 1 222222 222222 11 11 11 333 1111111111111 11111111 1 1 1 1111 2222 11 77777777777777777777777777777777 1 11 1 77777777777777 1 1 1 4444444444444444444444444444444444444444 111 33333333333333333 333 22222 11 111 11 333333 1 1 1 444 11 1 1 111 33333333 33333 1
lowQualScore : 111 1 5 4444444 5 6666 222 4 4 222 666 4 4 66 77 5555 4 4 1 66 5 3 5 888 5 22222 5 5 1 5 5 66 66 888 6 99 3 8888 44 8 8 66 8 8 0 888888 8 3 000000 8 11 88 11 8 333 1 8888888888888 8 8 55555555 55 0 6 2 0 8 3 0 7777 1111 0 33 44444444444444444444444444444444 5 3 77 5 3 55555555555555 0 0 0 1111111111111111111111111111111111111111 777 33333333333333333 222 3 3 8 8 11111 11 8 8 444 8 0 33 7 888888 7 3 3 3 333 6 88 3 3 777 22222222 55555 3
lowQualScore : ... . . ....... . .... ... . . ... ... . . .. .. .... . . . .. . . . ... . ..... . . . . . .. .. ... . .. . .... .. . . .. . . . ...... . . ...... . .. .. .. . ... . ............. . . ........ .. . . . . . . . .... .... . .. ................................ . . .. . . .............. . . . ........................................ ... ................. ... . . . . ..... .. . . ... . . .. . ...... . . . . ... . .. . . ... ........ ..... .
lowQualScore : 777 0 0 4444444 0 7777 222 4 4 222 888 4 4 11 11 8888 4 4 0 99 0 2 5 888 6 55555 0 0 0 7 0 99 99 333 7 22 8 4444 00 0 0 00 0 0 6 666666 0 2 888888 0 00 66 00 0 000 0 8888888888888 0 0 88888888 00 0 5 5 0 8 2 0 7777 2222 8 88 88888888888888888888888888888888 5 2 55 0 2 88888888888888 0 0 0 2222222222222222222222222222222222222222 555 88888888888888888 000 2 8 0 0 66666 00 0 0 000 0 8 88 3 333333 3 3 3 3 333 7 33 3 3 777 33333333 00000 3
consensus : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----AATAT----AGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC------CCTCTTATA-CAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAGG-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
Reference ( family-1646 ) : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----AATAT----AGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC-----ACCTTTTATA-CAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAG--TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
gi|1 : TATTTT-TTG-------A-AATATATGCAGTCAAGGAGTTT-T-C---CGTTACCTACATCATGTTT-GAATTGC-CATGAAAAAGAGGCTGC-T-GGTATAC--GAGCCCGACGCCAATGTC--GGGCCTCAAGCACAT-TGCAA---ATG--AGGCGTTTTTCCTCATAAGA-TAAAGGCACTCTATATTAT-ATTTATA-TAGAAATGCTAGATTACT-CTTAT--ATAGAGGAAAGAACAAAAAC-AAAA-TA-ACATTAAATTTTTTA-TTGATT-GGCGTT-TTGGTCGTGGCATT----T-AATAAACAGTAT-ACCAAGG-TCGCTGGCCAACGGGCAGACCCA-AGCAAAAAC-AAACCAGCTATAACAGAGTAATAT----AGCCAGCGATATAAAGCGCCATTCCGGGTTGACCGCGAAATGAC-TA-TACAG-TCGCCAAGCAGGGCAGACCCAGCAGCACAACAACAAAATACAAAAGTAAGCAGC-AATA-------AAGG-----TTAGAC-TTCCGGGTTG-ACCGCAAAATGGCCATTTACCTTTCATAACAGG-TCG-CCAA-GA----GGC--GA-C----C----CAGC----AAAC-ATAAC---AGCATA-CAT---C--AG---TATAAGCATCAT---AAAGGTTT-GCCAA--T--CGGG--TTGA-CCGGCAA---GTGGCTA-TTT-CCTTT
gi|10 : atgatctgaaaatgcatgaaaaccaagagcagtatctttctagcttaagacattaatgttatctcaacgggaagggaggcgggtttataatcaaggatgccaagaattttgctcAACGA---CAGAATGTGGTTATTTTTCTG---TTTTA-AATA----AAGCTAAAAAA--T-T-T---CACAAC-TA--TC-T--TT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATG-CA---ATACCAG-----TTTGCTCATAAGA-TAAAGGCA-TCTATATCTT-TTTCATA-TAGA--TGCTA--TT-----T-AT--ATaaatatgtttaactgttaaattgtgaatttccaaattgaacaagcaacagtattagcagcccacgtaaagcacagtatacaatcaagcagttatgtttttgttccaggattgacctgcgaaacattgcaccaaaatattaacacttctcaaatatcaatcatcttcagagttcaatgttttgcaatcaatcaaaaacctacagtcagcatcacaaatcttgcatatcagtgaatggatggcgctaatgccacatgaccaagaactgaaagttcaaggtcacacccacatatgggagccccatttcccacttgaccaaacaacgaccaccacctttttacttaagcggttgtcaggaagcacggattcaacacctcatctgtaaaatactcaaccctgtatgtttgttcaaaaaatatggaattacataagaagggtgaggtgcaccttatcactatacaaagaattggtcaatgttttaacaatgtctggaatgctgaaataaagcctctctaactgcagtaccctacactctgtcgcccattaaatcgtgcacgaggttacatagcccatatgtcttaagaaaattgaaagatacaagactaaattgttgaccaaatggtatttaagacaactcagtaatcccataaggtcttatggcttcattattgttaaggaacaatgtacacttggtcccctaaataattcagcaagaagtcagggtattccatcccacttgattaagtataaaac
gi|12 : tacagtgtagcctgggcagacctcatgacctgaaattgcatgaaaaccgagagcagtatctgcctaacttaaaacataaatttgtttaaaagagaagggagggatggggttttaaatcAACGATGCCAGAATCTGGTTATTTT-CTGAAAT---A-AATG----CAGCTAAGAA---T-T-T---TACAATGTA--TC-TGTT--GAA--GATCATGTAGAAAAGGG-AT-T-CGTATGCC-GAGTCCGATGCTACAGCC--GAGC-TCGAGCAAAA-TGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TT
gi|13 : aatTTGATA-TAAA--TCCTG--TTA-T-CT-AT--ATAGAGAGAAA--CAAAAACT-AAA-TACAGTTTAATTGTTATA-TCGGTT-GGCATTGTTGG-CTTGGCATT-A------------------------------GAGCA--GTGCAAACCC--AGCAAA--C-ACAACAGC-ATACAA----AGTGTAAGAAGC-AAA-ATCT---G
gi|15 : ggattgagtaattgatgatcag---CAGATTGTGGTTATTTT-CTG-------A-AATA----C--------------T-T---CACAACCTG--TC-TGTTT-GAA--GTTCCTGTAGAAAAGGG-AT-T-TGTATACA-GAACCCGATGCCAAAGCC--GAGC-TCGAGC-AAAATGACA---ATAGCAA-----TTTCCTCATAAGA-TAAAGGCA-TCCATATTAT-AATTGTATTACA--TGCttgaccgat
gi|16 : tgc---CAGATTTTGGTTATTTT-TTGAAAT---ATAATG----CAGCCAAAGT---T-T-TT--CGTTACCTC--AC-TGTTT-GAA--GTGCATG--AAAAAGAG-GC-TGTGTATACCTGACCCCGATGCCAAGGTT--GGGC-TCAGGCACAT-TGCAA---ATAGTGG-----TTTCCTCATAAGA-TAAAGGCA-TCTAT
gi|2 : A--TTA-TACT-A---ATAGAGGAAAT--TGAGAACCAAAAATA-AGGTTAATTCTTTTAATCGATTTGGCGTTGTTGG-CGTGGCATT-AAATGAA-AAGCAGCA--AC--AGG-TCGCCAAGCA--GG-CAGACCCA-GGCAAA--C-AAAACA---ATACAA----AGTAT----AAG-AAC-ATTT---GCA----TCTGGGTTGAC-GC-AAATAGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-CA-GGCA----AACACAA--CAA---A-----GCATACA-------AA-------TTGG-CATTCCGGGTT-GACC-CCAAATGAT-------------TA-CAGGCTCGACCAA--AGCAGG----GAG-A---C----CAG-C--AAA---A-AAC---AACAT--CAC-AGCAA-----TATAAG---CATAGAAA--G-TT-GCCA---TTCCGGG--TTGA-CA-GCAAATGATGGCCATTTTACCTTTTAAGTCAACAGGTCGCCAAGC--GACAGACCCAGCAAA------CACAAC-A-AGCAAAACAAATTATAAAGTAGCATAAA---TTG-CAGACCGGGTTTAAACCGAAAATGGCAAATTTACTTATTAAAATCTT-GCCGCA-TTGGTTTGTTCCGGGTTGATT-----CAA-ACATA
gi|21 : tatgaaaAAATG-TTAGCCAT--TCC--GG--TTGA-CT-GCAA---ATGACCA-TTTATCTTTCA--GCAACgtaccaaaatatttacacttaaaaatatcaatcactcttcacagttcaatcaagcaatcactctcagttcaatgtttgcaatcatactaaaacaaacagtcttgcagccacaaaaaatgtcactatcagtggaatggatgccgcaaatgcccatggaccaggaatgaaagtcaccccacacacagggagccccagatccactggaccacgaccaacccatttgataatctattcccaacagagggtgtcagggaacacaatctacaccacacgtcactgttgaaacccccctgctatccccttgttatatgttaaaaacagttgagcgaggtgtaattatcaccaggacaaaagttgatctagtcaataatgagaccctaagcttaatatataagcccttcctaacagcagtaccttgcaggtcgctgccctataaaccaggtatgtgccctctccatgcgccatatctaccgaaatcataagatccacgttagccaaatttgaaacaaatgagttgtcgttaagtagagcaggttttgtacttggcttgcccctttgttttgctatggatttttgaaatgattaatatgggttgcccaaatcataaccccacaaggaggatggatatccctccaactagcaagtagaaaacc
gi|22 : aacatATA----CAGTCAAACA---T-TGT---CACAATC---------------A--G-TC-TGTAGAAAAGGG-AT-T-TGTATACC-GAGCCCGATGCCctatcattgc
gi|4 : AACGA---CAGAATGTGGTTATTTT-CTG---TTTTA-AATA----CAGCTAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATGCCC---ATACCAG-----TTTCCTCATAAGA-CAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATGGAGGAAAT--TGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGGA--AC--AAG-TCGGCAAGCA--GGGCAGACCC--AGCAAA--C-AAAACA---ATATCA----AACAC----CGC-CAC-AATT---GTGC-ATTCCGGGTTGA-CGC-AAATGGCCTATTACAGTTGCCCCAGC-GG-TCCACC-AG-AGCA----AATAGAA--CAA---T-----TC-TATA-------AAGC-----TTGGACATTCCGTGTTGGACC-CAGAATG--------CTTCTTATA-CAGG-TCG-CCAAGGAGCAAGGCGTGGGCAAGGCTACGCAGCCGAAAGGCGA-AACCGAAACAGAGCACAAGCAAAGAGTTATAAG-ACTATAGAAGAGG-TT-GGCATGGTTCCGGGGACTGAGCC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTTT-AAGTAGCATAAAGGTTTGCCAGACCGGGTT--GACCGCAAATGGC-AATTTACCT-TTCAAATC-TAGCTGCATTT-GTTTGTTCCGGGTTGATTTCTGGCAACACATA
gi|5 : GAATGTGGTTATTTT-CTG-------A-AATAATG-CAGCTAAAAA---T-T-TGTCCACA-CCTA--TC-TGTTTTGGA--GATCATGTAGAAAAGGG-ATCT-TGTATGCC-GAGCCCGATGCTACAGCCCGAAGC-TCGAGCAAAA-TACAC---ATACCAG-----TTTCCTCATAAGAATAAAGGCA-T-TATATCTTTATTTATA-TAGA--TGCTA--TTA-T-CT-ATTAAT-GAGGAAAT---GAGAACCAAAA-TA-A-TTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATTAA--T-AA-AAGCAGCAGGAC--AGGTTCGCCAAGCA---GGCAGACCCAGAGCAAA--CAAAAACA---ATCACA----AAGCA----AGC-AAC-ATTT---TGGC-ATTCCGGGTTGACCGC-AAATG--CTA-TACAGGTCGCCCAGCAGG-
gi|6 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgc-AGCA----AACAAAA--CAA---T-----A--TACAGTATTATAAGCAACATTTGG-CATTCCGGGCTG-ACAGCAAA-TAGC-----------TATA-CAGG-TCG-TCAA-G-------C--AAACA---C-------------------AAC---AACAG----CAAACAAAG---TATAAA---CATAGAAAGGT-TT-GCCAT--T-CCGGG--TTGA-TC-GCAA---ATGGCCA-TTTACCTTTTA--TCAACAGATAGCCAAGCAGGACAAACCCAGCAAACAAATGCACAACAACAGC-ATGCAGATTAT-AAGTAGCATAAAGGATTGCCAGACCGGGTT--GATCGAAAATGGC-AATTTACCT-TTAAAATC-T-GC--------------TCCGTGTTGATT----GCAA-ACATA
gi|7 : ---CAGATCGTGGTTATTTT-CT----T---A-AATAAAAGCAGTCAAAAC---TAT-T---TATTACCTC--TC-TGTTT-GAA--ATGCATGTAGA------------------CC-TAGCTCGATGCCAAAGCC--GACC-TTGAGC-AAAATGCCAATTATAGCAA-----TTTCCTTATAAGA-TAAAG-------ATATTAT-ATTTATG-TAGA--TGCTA--Tgtaccaaaatatttacactttaaaaatattaatcactcttcacagtcctatcaatcaatcaatcaatcaatcagtccacagttcaatcaatttcagttcaatgttttgcaatcatacatgtacctaaaacaaacagtctacagcacaaaatttgatacatcagtggaatgaatgggcgcatgtggagccacgtgaccaggaactg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTTAGCAGGGGTGAGGTGCACCTTATCATTAGACAAGAATTGGTCAATGTTTCTAATGAGGTCCGGATGCTTGATATAAGCCCCTCTTAACTGCAGTACCCTACACTCTGTCGCCCTATTAAATCGTTCACGAGTTTCCATAGCCATATTGTCTTCAGAAAATCTATAACATCTCGAGGCAAAATTTGGGACCAAATGAGTGTATTAAGACACTCAGCGATTTCCATAAGGTCTTGTTTCATTTTTGTTATTAATGAACAATGGTACAGTTGGGTCCCCTAAATAATTTCCCCACAATGAACAAAAAGTCAGGGTATCCCCCCTCTTAGTTAAGTATAAAACCTTTTCCTTAAATGTATAAAATTTAGACCTGAATAGCCTTGCCACCATAGTTCTATGCCTAACCTACCACACCTAAATGTACCCCCATGCCCAAGTAGGGCTGCCTGAAATGCATGCTTAATTACTCATGACCCAACACACTTAGGAAAGTATAAATTACAAACAAATAGGACACCGAATATGTGACTTGAAAACCTGTGACTTCCATCTGCTTGTTTCCCTAACGGTATCAGGATCACATCCTTGTTGGTAAGCAGAAATAGCAGCTCCTATTCTGAATGAATTCGACTTGTATCTACCACTCCTAAACCTAGTAGGTTTGTAGCTATATGCAAAACAGATGTGAACTGATACCTTGTTAATGGACTATAGTCAAAATGACAAAACAATAGCCCACTGACCATGGGTCTAACAGCCAGTAACTCCAACATGAATCTAACTGGGCACTGTGAACTATATACTTTGTCAATGCTAATGTTTAC
Unaligned ( gi|8 ): CGGGGTAGAATTTGGGACCATATTAGTGTGGCTTGTGGAAAATGGCCCATAATTTCCGTCAAATTCTTCCTAACTTTTGCAATGAGACGAAATACATGTAAATCCAATGAATAAAAATTGGACCCAATGCCATTACCACCACAATGGATAAGTATAAAATCTAGGGCCTTTTCATATAAAAGTTTTTTCTTTAGGTCAGCAACTTTCATACCCGAGTAACCCTGTCACTATAATGTCAATCCTACTCTTTCCGAGCCAAGGTTGACCCCATCAGGTCTAGTAAATGTTTGCATGAATGCTCGTTTGATTGAAGATCAAGAACCCACACA
Unaligned ( gi|9 ): GAGGACACCGAATGTAAGAATTGTATGAATTTGATTTCCATCGACCAGCTTCCATTATACTTTCTCCCAGGCATCCTGCTTCAAATGCCAGCAGTAGCCTTCCTATTAAATGAGTGAGCCCTATATCTATCGCTTCCTTCAACTGATTTTAACACTTTATCCAAACTTGTGAAAAATGATAACTGGTCAATGGCTGTCACTCGACATGAACAAGTAATGACCCTGAACGTTTAAGGCCTCATGGAAAGAAACTTTTTATAAATTACTAACTGGGCAATGTAATATTGTTAACTTGATCAATGCAGAAGATTTACCCCC
Unaligned ( gi|11 ): TTCTAAAATATCAATCACTCTTCAACGTGTAATGTTTTGCAATCAATCAAATAATGAATAAACCTACAGTCAGCATCACAAACTTGACATATCAGTGGAATGGATGGGCGCTAATGCCAAATGACCAAGAACTGAAAGTTCGAGGTCATCCCACATATGGGGAGCCCCATTCCTCTGGACCACGACCAACCACCTTAATTTATTATCTTAGCAGGGGT
Unaligned ( gi|14 ): AGATTCACGTGGTAAATGGGACCAAATGAGTTTGTATAAGGTTGAAGCTCGGTTATTTTCTCAGGGCTTTGTCCCATTATAATTTGGATCCCCAAATCACTATCCCCACAATGAAGTTGGGATAACCCTCCAACTTTGCCAAGTATAAAACTTTTCTGCTACTAATCC
Unaligned ( gi|17 ): AGCCCCTCCTTACACAGTACCTTTGCAGGTCGGTGCTCTATTAAACCGTTCATGTGCCCTCTTCATAGCCATGTCTATAGGAAATCACAAGATCCACGTAGCAAATTTGGCACCAACTGAG
Unaligned ( gi|18 ): ATCTATCGCAACAGAGGGTACCGGGAAACACAAATCCACACTGTACCCACTGTTGACTGTTGAAATACTCAAGGCACCCCCCACCTCACCTGTATATAGTTGAAACATTTGAG
Unaligned ( gi|19 ): CCAATGTAGTCTAGACAGGATGACACACATTGTAGCCTGAATGGGAAGATACTCCAATGTAGCCTGGACAGGGTAATACTCCAATGTAGCCTGTACAAGATGATA
Unaligned ( gi|20 ): AAAGGACATCAAATATACGACTTGTATACTTTTGATTTCCAGCGCCCAGCTTCCATAATGGTTTCTGGGGAACATCCAGCTATATCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 111 4444444 2222 111 111 1 11111 1111 1 222222 222222 11 11 11 333 1111111111111 11111111 1 1 1 1111 2222 11 77777777777777777777777777777777 1 11 1 77777777777777 1 1 1 4444444444444444444444444444444444444444 111 33333333333333333 333 22222 11 111 11 333333 1 1 1 333 11 1 1 111 33333333 33333 1
lowQualScore : 111 1 5 4444444 5 6666 222 4 4 222 666 4 4 66 77 5555 4 4 1 66 5 3 5 888 5 22222 5 5 1 5 5 66 66 888 6 99 3 8888 44 8 8 66 8 8 0 888888 8 3 000000 8 11 88 11 8 333 1 8888888888888 8 8 55555555 55 0 6 2 0 8 3 0 7777 1111 0 33 44444444444444444444444444444444 5 3 77 5 3 00000000000000 0 0 0 1111111111111111111111111111111111111111 777 33333333333333333 222 3 3 8 8 11111 11 8 8 444 8 0 33 7 888888 7 3 3 3 111 6 88 3 3 777 22222222 55555 3
lowQualScore : ... . . ....... . .... ... . . ... ... . . .. .. .... . . . .. . . . ... . ..... . . . . . .. .. ... . .. . .... .. . . .. . . . ...... . . ...... . .. .. .. . ... . ............. . . ........ .. . . . . . . . .... .... . .. ................................ . . .. . . .............. . . . ........................................ ... ................. ... . . . . ..... .. . . ... . . .. . ...... . . . . ... . .. . . ... ........ ..... .
lowQualScore : 777 0 0 4444444 0 7777 222 4 4 222 888 4 4 11 11 8888 4 4 0 99 0 2 5 888 6 55555 0 0 0 7 0 99 99 333 7 22 8 4444 00 0 0 00 0 0 6 666666 0 2 888888 0 00 66 00 0 000 0 8888888888888 0 0 88888888 00 0 5 5 0 8 2 0 7777 2222 8 88 88888888888888888888888888888888 5 2 55 0 2 22222222222222 0 0 0 2222222222222222222222222222222222222222 555 88888888888888888 000 2 8 0 0 66666 00 0 0 000 0 8 88 3 333333 3 3 3 3 777 7 33 3 3 777 33333333 00000 3
consensus : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----AATAT----AGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC------CCTCTTAT-ACAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAGG-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
Reference ( family-1646 ) : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----AATAT----AGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC------CCTCTTAT-ACAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAGG-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
gi|1 : TATTTT-TTG-------A-AATATATGCAGTCAAGGAGTTT-T-C---CGTTACCTACATCATGTTT-GAATTGC-CATGAAAAAGAGGCTGC-T-GGTATAC--GAGCCCGACGCCAATGTC--GGGCCTCAAGCACAT-TGCAA---ATG--AGGCGTTTTTCCTCATAAGA-TAAAGGCACTCTATATTAT-ATTTATA-TAGAAATGCTAGATTACT-CTTAT--ATAGAGGAAAGAACAAAAAC-AAAA-TA-ACATTAAATTTTTTA-TTGATT-GGCGTT-TTGGTCGTGGCATT----T-AATAAACAGTAT-ACCAAGG-TCGCTGGCCAACGGGCAGACCCA-AGCAAAAAC-AAACCAGCTATAACAGAGTAATAT----AGCCAGCGATATAAAGCGCCATTCCGGGTTGACCGCGAAATGAC-TA-TACAG-TCGCCAAGCAGGGCAGACCCAGCAGCACAACAACAAAATACAAAAGTAAGCAGC-AATA-------AAGG-----TTAGAC-TTCCGGGTTG-ACCGCAAAATGGCCATTTACCTTTCATAACAGG-TCG-CCAA-GA----GGC--GA-C----C----CAGC----AAAC-ATAAC---AGCATA-CAT---C--AG---TATAAGCATCAT---AAAGGTTT-GCCAA--T--CGGG--TTGA-CCGGCAA---GTGGCTA-TTT-CCTTT
gi|10 : atgatctgaaaatgcatgaaaaccaagagcagtatctttctagcttaagacattaatgttatctcaacgggaagggaggcgggtttataatcaaggatgccaagaattttgctcAACGA---CAGAATGTGGTTATTTTTCTG---TTTTA-AATA----AAGCTAAAAAA--T-T-T---CACAAC-TA--TC-T--TT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATG-CA---ATACCAG-----TTTGCTCATAAGA-TAAAGGCA-TCTATATCTT-TTTCATA-TAGA--TGCTA--TT-----T-AT--ATaaatatgtttaactgttaaattgtgaatttccaaattgaacaagcaacagtattagcagcccacgtaaagcacagtatacaatcaagcagttatgtttttgttccaggattgacctgcgaaacattgcaccaaaatattaacacttctcaaatatcaatcatcttcagagttcaatgttttgcaatcaatcaaaaacctacagtcagcatcacaaatcttgcatatcagtgaatggatggcgctaatgccacatgaccaagaactgaaagttcaaggtcacacccacatatgggagccccatttcccacttgaccaaacaacgaccaccacctttttacttaagcggttgtcaggaagcacggattcaacacctcatctgtaaaatactcaaccctgtatgtttgttcaaaaaatatggaattacataagaagggtgaggtgcaccttatcactatacaaagaattggtcaatgttttaacaatgtctggaatgctgaaataaagcctctctaactgcagtaccctacactctgtcgcccattaaatcgtgcacgaggttacatagcccatatgtcttaagaaaattgaaagatacaagactaaattgttgaccaaatggtatttaagacaactcagtaatcccataaggtcttatggcttcattattgttaaggaacaatgtacacttggtcccctaaataattcagcaagaagtcagggtattccatcccacttgattaagtataaaac
gi|12 : tacagtgtagcctgggcagacctcatgacctgaaattgcatgaaaaccgagagcagtatctgcctaacttaaaacataaatttgtttaaaagagaagggagggatggggttttaaatcAACGATGCCAGAATCTGGTTATTTT-CTGAAAT---A-AATG----CAGCTAAGAA---T-T-T---TACAATGTA--TC-TGTT--GAA--GATCATGTAGAAAAGGG-AT-T-CGTATGCC-GAGTCCGATGCTACAGCC--GAGC-TCGAGCAAAA-TGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TT
gi|13 : aatTTGATA-TAAA--TCCTG--TTA-T-CT-AT--ATAGAGAGAAA--CAAAAACT-AAA-TACAGTTTAATTGTTATA-TCGGTT-GGCATTGTTGG-CTTGGCATT-A------------------------------GAGCA--GTGCAAACCC--AGCAAA--C-ACAACAGC-ATACAA----AGTGTAAGAAGC-AAA-ATCT---G
gi|15 : ggattgagtaattgatgatcag---CAGATTGTGGTTATTTT-CTG-------A-AATA----C--------------T-T---CACAACCTG--TC-TGTTT-GAA--GTTCCTGTAGAAAAGGG-AT-T-TGTATACA-GAACCCGATGCCAAAGCC--GAGC-TCGAGC-AAAATGACA---ATAGCAA-----TTTCCTCATAAGA-TAAAGGCA-TCCATATTAT-AATTGTATTACA--TGCttgaccgat
gi|16 : tgc---CAGATTTTGGTTATTTT-TTGAAAT---ATAATG----CAGCCAAAGT---T-T-TT--CGTTACCTC--AC-TGTTT-GAA--GTGCATG--AAAAAGAG-GC-TGTGTATACCTGACCCCGATGCCAAGGTT--GGGC-TCAGGCACAT-TGCAA---ATAGTGG-----TTTCCTCATAAGA-TAAAGGCA-TCTAT
gi|2 : A--TTA-TACT-A---ATAGAGGAAAT--TGAGAACCAAAAATA-AGGTTAATTCTTTTAATCGATTTGGCGTTGTTGG-CGTGGCATT-AAATGAA-AAGCAGCA--AC--AGG-TCGCCAAGCA--GG-CAGACCCA-GGCAAA--C-AAAACA---ATACAA----AGTAT----AAG-AAC-ATTT---GCA----TCTGGGTTGAC-GC-AAATAGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-CA-GGCA----AACACAA--CAA---A-----GCATACA-------AA-------TTGG-CATTCCGGGTT-GACC-CCAAATGAT-------------T-ACAGGCTCGACCAA--AGCAGG----GAG-A---C----CAG-C--AAA---A-AAC---AACAT--CAC-AGCAA-----TATAAG---CATAGAAA--G-TT-GCCA---TTCCGGG--TTGA-CA-GCAAATGATGGCCATTTTACCTTTTAAGTCAACAGGTCGCCAAGC--GACAGACCCAGCAAA------CACAAC-A-AGCAAAACAAATTATAAAGTAGCATAAA---TTG-CAGACCGGGTTTAAACCGAAAATGGCAAATTTACTTATTAAAATCTT-GCCGCA-TTGGTTTGTTCCGGGTTGATT-----CAA-ACATA
gi|21 : tatgaaaAAATG-TTAGCCAT--TCC--GG--TTGA-CT-GCAA---ATGACCA-TTTATCTTTCA--GCAACgtaccaaaatatttacacttaaaaatatcaatcactcttcacagttcaatcaagcaatcactctcagttcaatgtttgcaatcatactaaaacaaacagtcttgcagccacaaaaaatgtcactatcagtggaatggatgccgcaaatgcccatggaccaggaatgaaagtcaccccacacacagggagccccagatccactggaccacgaccaacccatttgataatctattcccaacagagggtgtcagggaacacaatctacaccacacgtcactgttgaaacccccctgctatccccttgttatatgttaaaaacagttgagcgaggtgtaattatcaccaggacaaaagttgatctagtcaataatgagaccctaagcttaatatataagcccttcctaacagcagtaccttgcaggtcgctgccctataaaccaggtatgtgccctctccatgcgccatatctaccgaaatcataagatccacgttagccaaatttgaaacaaatgagttgtcgttaagtagagcaggttttgtacttggcttgcccctttgttttgctatggatttttgaaatgattaatatgggttgcccaaatcataaccccacaaggaggatggatatccctccaactagcaagtagaaaacc
gi|22 : aacatATA----CAGTCAAACA---T-TGT---CACAATC---------------A--G-TC-TGTAGAAAAGGG-AT-T-TGTATACC-GAGCCCGATGCCctatcattgc
gi|4 : AACGA---CAGAATGTGGTTATTTT-CTG---TTTTA-AATA----CAGCTAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATGCCC---ATACCAG-----TTTCCTCATAAGA-CAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATGGAGGAAAT--TGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGGA--AC--AAG-TCGGCAAGCA--GGGCAGACCC--AGCAAA--C-AAAACA---ATATCA----AACAC----CGC-CAC-AATT---GTGC-ATTCCGGGTTGA-CGC-AAATGGCCTATTACAGTTGCCCCAGC-GG-TCCACC-AG-AGCA----AATAGAA--CAA---T-----TC-TATA-------AAGC-----TTGGACATTCCGTGTTGGACC-CAGAATG--------CTTCTTAT-ACAGG-TCG-CCAAGGAGCAAGGCGTGGGCAAGGCTACGCAGCCGAAAGGCGA-AACCGAAACAGAGCACAAGCAAAGAGTTATAAG-ACTATAGAAGAGG-TT-GGCATGGTTCCGGGGACTGAGCC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTTT-AAGTAGCATAAAGGTTTGCCAGACCGGGTT--GACCGCAAATGGC-AATTTACCT-TTCAAATC-TAGCTGCATTT-GTTTGTTCCGGGTTGATTTCTGGCAACACATA
gi|5 : GAATGTGGTTATTTT-CTG-------A-AATAATG-CAGCTAAAAA---T-T-TGTCCACA-CCTA--TC-TGTTTTGGA--GATCATGTAGAAAAGGG-ATCT-TGTATGCC-GAGCCCGATGCTACAGCCCGAAGC-TCGAGCAAAA-TACAC---ATACCAG-----TTTCCTCATAAGAATAAAGGCA-T-TATATCTTTATTTATA-TAGA--TGCTA--TTA-T-CT-ATTAAT-GAGGAAAT---GAGAACCAAAA-TA-A-TTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATTAA--T-AA-AAGCAGCAGGAC--AGGTTCGCCAAGCA---GGCAGACCCAGAGCAAA--CAAAAACA---ATCACA----AAGCA----AGC-AAC-ATTT---TGGC-ATTCCGGGTTGACCGC-AAATG--CTA-TACAGGTCGCCCAGCAGG-
gi|6 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgc-AGCA----AACAAAA--CAA---T-----A--TACAGTATTATAAGCAACATTTGG-CATTCCGGGCTG-ACAGCAAA-TAGC-----------TAT-ACAGG-TCG-TCAA-G-------C--AAACA---C-------------------AAC---AACAG----CAAACAAAG---TATAAA---CATAGAAAGGT-TT-GCCAT--T-CCGGG--TTGA-TC-GCAA---ATGGCCA-TTTACCTTTTA--TCAACAGATAGCCAAGCAGGACAAACCCAGCAAACAAATGCACAACAACAGC-ATGCAGATTAT-AAGTAGCATAAAGGATTGCCAGACCGGGTT--GATCGAAAATGGC-AATTTACCT-TTAAAATC-T-GC--------------TCCGTGTTGATT----GCAA-ACATA
gi|7 : ---CAGATCGTGGTTATTTT-CT----T---A-AATAAAAGCAGTCAAAAC---TAT-T---TATTACCTC--TC-TGTTT-GAA--ATGCATGTAGA------------------CC-TAGCTCGATGCCAAAGCC--GACC-TTGAGC-AAAATGCCAATTATAGCAA-----TTTCCTTATAAGA-TAAAG-------ATATTAT-ATTTATG-TAGA--TGCTA--Tgtaccaaaatatttacactttaaaaatattaatcactcttcacagtcctatcaatcaatcaatcaatcaatcagtccacagttcaatcaatttcagttcaatgttttgcaatcatacatgtacctaaaacaaacagtctacagcacaaaatttgatacatcagtggaatgaatgggcgcatgtggagccacgtgaccaggaactg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTTAGCAGGGGTGAGGTGCACCTTATCATTAGACAAGAATTGGTCAATGTTTCTAATGAGGTCCGGATGCTTGATATAAGCCCCTCTTAACTGCAGTACCCTACACTCTGTCGCCCTATTAAATCGTTCACGAGTTTCCATAGCCATATTGTCTTCAGAAAATCTATAACATCTCGAGGCAAAATTTGGGACCAAATGAGTGTATTAAGACACTCAGCGATTTCCATAAGGTCTTGTTTCATTTTTGTTATTAATGAACAATGGTACAGTTGGGTCCCCTAAATAATTTCCCCACAATGAACAAAAAGTCAGGGTATCCCCCCTCTTAGTTAAGTATAAAACCTTTTCCTTAAATGTATAAAATTTAGACCTGAATAGCCTTGCCACCATAGTTCTATGCCTAACCTACCACACCTAAATGTACCCCCATGCCCAAGTAGGGCTGCCTGAAATGCATGCTTAATTACTCATGACCCAACACACTTAGGAAAGTATAAATTACAAACAAATAGGACACCGAATATGTGACTTGAAAACCTGTGACTTCCATCTGCTTGTTTCCCTAACGGTATCAGGATCACATCCTTGTTGGTAAGCAGAAATAGCAGCTCCTATTCTGAATGAATTCGACTTGTATCTACCACTCCTAAACCTAGTAGGTTTGTAGCTATATGCAAAACAGATGTGAACTGATACCTTGTTAATGGACTATAGTCAAAATGACAAAACAATAGCCCACTGACCATGGGTCTAACAGCCAGTAACTCCAACATGAATCTAACTGGGCACTGTGAACTATATACTTTGTCAATGCTAATGTTTAC
Unaligned ( gi|8 ): CGGGGTAGAATTTGGGACCATATTAGTGTGGCTTGTGGAAAATGGCCCATAATTTCCGTCAAATTCTTCCTAACTTTTGCAATGAGACGAAATACATGTAAATCCAATGAATAAAAATTGGACCCAATGCCATTACCACCACAATGGATAAGTATAAAATCTAGGGCCTTTTCATATAAAAGTTTTTTCTTTAGGTCAGCAACTTTCATACCCGAGTAACCCTGTCACTATAATGTCAATCCTACTCTTTCCGAGCCAAGGTTGACCCCATCAGGTCTAGTAAATGTTTGCATGAATGCTCGTTTGATTGAAGATCAAGAACCCACACA
Unaligned ( gi|9 ): GAGGACACCGAATGTAAGAATTGTATGAATTTGATTTCCATCGACCAGCTTCCATTATACTTTCTCCCAGGCATCCTGCTTCAAATGCCAGCAGTAGCCTTCCTATTAAATGAGTGAGCCCTATATCTATCGCTTCCTTCAACTGATTTTAACACTTTATCCAAACTTGTGAAAAATGATAACTGGTCAATGGCTGTCACTCGACATGAACAAGTAATGACCCTGAACGTTTAAGGCCTCATGGAAAGAAACTTTTTATAAATTACTAACTGGGCAATGTAATATTGTTAACTTGATCAATGCAGAAGATTTACCCCC
Unaligned ( gi|11 ): TTCTAAAATATCAATCACTCTTCAACGTGTAATGTTTTGCAATCAATCAAATAATGAATAAACCTACAGTCAGCATCACAAACTTGACATATCAGTGGAATGGATGGGCGCTAATGCCAAATGACCAAGAACTGAAAGTTCGAGGTCATCCCACATATGGGGAGCCCCATTCCTCTGGACCACGACCAACCACCTTAATTTATTATCTTAGCAGGGGT
Unaligned ( gi|14 ): AGATTCACGTGGTAAATGGGACCAAATGAGTTTGTATAAGGTTGAAGCTCGGTTATTTTCTCAGGGCTTTGTCCCATTATAATTTGGATCCCCAAATCACTATCCCCACAATGAAGTTGGGATAACCCTCCAACTTTGCCAAGTATAAAACTTTTCTGCTACTAATCC
Unaligned ( gi|17 ): AGCCCCTCCTTACACAGTACCTTTGCAGGTCGGTGCTCTATTAAACCGTTCATGTGCCCTCTTCATAGCCATGTCTATAGGAAATCACAAGATCCACGTAGCAAATTTGGCACCAACTGAG
Unaligned ( gi|18 ): ATCTATCGCAACAGAGGGTACCGGGAAACACAAATCCACACTGTACCCACTGTTGACTGTTGAAATACTCAAGGCACCCCCCACCTCACCTGTATATAGTTGAAACATTTGAG
Unaligned ( gi|19 ): CCAATGTAGTCTAGACAGGATGACACACATTGTAGCCTGAATGGGAAGATACTCCAATGTAGCCTGGACAGGGTAATACTCCAATGTAGCCTGTACAAGATGATA
Unaligned ( gi|20 ): AAAGGACATCAAATATACGACTTGTATACTTTTGATTTCCAGCGCCCAGCTTCCATAATGGTTTCTGGGGAACATCCAGCTATATCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 111 4444444 2222 111 111 1 11111 1111 1 222222 222222 11 11 11 333 1111111111111 11111111 1 1 1 1111 2222 11 77777777777777777777777777777777 1 11 1 77777777777777 1 1 1 4444444444444444444444444444444444444444 111 33333333333333333 333 22222 11 111 11 333333 1 1 1 333 11 1 1 111 33333333 33333 1
lowQualScore : 111 1 5 4444444 5 6666 222 4 4 222 666 4 4 66 77 5555 4 4 1 66 5 3 5 888 5 22222 5 5 1 5 5 66 66 888 6 99 3 8888 44 8 8 66 8 8 0 888888 8 3 000000 8 11 88 11 8 333 1 8888888888888 8 8 55555555 55 0 6 2 0 8 3 0 7777 1111 0 33 44444444444444444444444444444444 5 3 77 5 3 00000000000000 0 0 0 1111111111111111111111111111111111111111 777 33333333333333333 222 3 3 8 8 11111 11 8 8 444 8 0 33 7 888888 7 3 3 3 111 6 88 3 3 777 22222222 55555 3
lowQualScore : ... . . ....... . .... ... . . ... ... . . .. .. .... . . . .. . . . ... . ..... . . . . . .. .. ... . .. . .... .. . . .. . . . ...... . . ...... . .. .. .. . ... . ............. . . ........ .. . . . . . . . .... .... . .. ................................ . . .. . . .............. . . . ........................................ ... ................. ... . . . . ..... .. . . ... . . .. . ...... . . . . ... . .. . . ... ........ ..... .
lowQualScore : 777 0 0 4444444 0 7777 222 4 4 222 888 4 4 11 11 8888 4 4 0 99 0 2 5 888 6 55555 0 0 0 7 0 99 99 333 7 22 8 4444 00 0 0 00 0 0 6 666666 0 2 888888 0 00 66 00 0 000 0 8888888888888 0 0 88888888 00 0 5 5 0 8 2 0 7777 2222 8 88 88888888888888888888888888888888 5 2 55 0 2 22222222222222 0 0 0 2222222222222222222222222222222222222222 555 88888888888888888 000 2 8 0 0 66666 00 0 0 000 0 8 88 3 333333 3 3 3 3 777 7 33 3 3 777 33333333 00000 3
consensus : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----AATAT----AGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC------CCTCTTAT-ACAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAGG-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
Reference ( family-1646 ) : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----AATAT----AGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC------CCTCTTAT-ACAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAGG-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
gi|1 : TATTTT-TTG-------A-AATATATGCAGTCAAGGAGTTT-T-C---CGTTACCTACATCATGTTT-GAATTGC-CATGAAAAAGAGGCTGC-T-GGTATAC--GAGCCCGACGCCAATGTC--GGGCCTCAAGCACAT-TGCAA---ATG--AGGCGTTTTTCCTCATAAGA-TAAAGGCACTCTATATTAT-ATTTATA-TAGAAATGCTAGATTACT-CTTAT--ATAGAGGAAAGAACAAAAAC-AAAA-TA-ACATTAAATTTTTTA-TTGATT-GGCGTT-TTGGTCGTGGCATT----T-AATAAACAGTAT-ACCAAGG-TCGCTGGCCAACGGGCAGACCCA-AGCAAAAAC-AAACCAGCTATAACAGAGTAATAT----AGCCAGCGATATAAAGCGCCATTCCGGGTTGACCGCGAAATGAC-TA-TACAG-TCGCCAAGCAGGGCAGACCCAGCAGCACAACAACAAAATACAAAAGTAAGCAGC-AATA-------AAGG-----TTAGAC-TTCCGGGTTG-ACCGCAAAATGGCCATTTACCTTTCATAACAGG-TCG-CCAA-GA----GGC--GA-C----C----CAGC----AAAC-ATAAC---AGCATA-CAT---C--AG---TATAAGCATCAT---AAAGGTTT-GCCAA--T--CGGG--TTGA-CCGGCAA---GTGGCTA-TTT-CCTTT
gi|10 : atgatctgaaaatgcatgaaaaccaagagcagtatctttctagcttaagacattaatgttatctcaacgggaagggaggcgggtttataatcaaggatgccaagaattttgctcAACGA---CAGAATGTGGTTATTTTTCTG---TTTTA-AATA----AAGCTAAAAAA--T-T-T---CACAAC-TA--TC-T--TT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATG-CA---ATACCAG-----TTTGCTCATAAGA-TAAAGGCA-TCTATATCTT-TTTCATA-TAGA--TGCTA--TT-----T-AT--ATaaatatgtttaactgttaaattgtgaatttccaaattgaacaagcaacagtattagcagcccacgtaaagcacagtatacaatcaagcagttatgtttttgttccaggattgacctgcgaaacattgcaccaaaatattaacacttctcaaatatcaatcatcttcagagttcaatgttttgcaatcaatcaaaaacctacagtcagcatcacaaatcttgcatatcagtgaatggatggcgctaatgccacatgaccaagaactgaaagttcaaggtcacacccacatatgggagccccatttcccacttgaccaaacaacgaccaccacctttttacttaagcggttgtcaggaagcacggattcaacacctcatctgtaaaatactcaaccctgtatgtttgttcaaaaaatatggaattacataagaagggtgaggtgcaccttatcactatacaaagaattggtcaatgttttaacaatgtctggaatgctgaaataaagcctctctaactgcagtaccctacactctgtcgcccattaaatcgtgcacgaggttacatagcccatatgtcttaagaaaattgaaagatacaagactaaattgttgaccaaatggtatttaagacaactcagtaatcccataaggtcttatggcttcattattgttaaggaacaatgtacacttggtcccctaaataattcagcaagaagtcagggtattccatcccacttgattaagtataaaac
gi|12 : tacagtgtagcctgggcagacctcatgacctgaaattgcatgaaaaccgagagcagtatctgcctaacttaaaacataaatttgtttaaaagagaagggagggatggggttttaaatcAACGATGCCAGAATCTGGTTATTTT-CTGAAAT---A-AATG----CAGCTAAGAA---T-T-T---TACAATGTA--TC-TGTT--GAA--GATCATGTAGAAAAGGG-AT-T-CGTATGCC-GAGTCCGATGCTACAGCC--GAGC-TCGAGCAAAA-TGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TT
gi|13 : aatTTGATA-TAAA--TCCTG--TTA-T-CT-AT--ATAGAGAGAAA--CAAAAACT-AAA-TACAGTTTAATTGTTATA-TCGGTT-GGCATTGTTGG-CTTGGCATT-A------------------------------GAGCA--GTGCAAACCC--AGCAAA--C-ACAACAGC-ATACAA----AGTGTAAGAAGC-AAA-ATCT---G
gi|15 : ggattgagtaattgatgatcag---CAGATTGTGGTTATTTT-CTG-------A-AATA----C--------------T-T---CACAACCTG--TC-TGTTT-GAA--GTTCCTGTAGAAAAGGG-AT-T-TGTATACA-GAACCCGATGCCAAAGCC--GAGC-TCGAGC-AAAATGACA---ATAGCAA-----TTTCCTCATAAGA-TAAAGGCA-TCCATATTAT-AATTGTATTACA--TGCttgaccgat
gi|16 : tgc---CAGATTTTGGTTATTTT-TTGAAAT---ATAATG----CAGCCAAAGT---T-T-TT--CGTTACCTC--AC-TGTTT-GAA--GTGCATG--AAAAAGAG-GC-TGTGTATACCTGACCCCGATGCCAAGGTT--GGGC-TCAGGCACAT-TGCAA---ATAGTGG-----TTTCCTCATAAGA-TAAAGGCA-TCTAT
gi|2 : A--TTA-TACT-A---ATAGAGGAAAT--TGAGAACCAAAAATA-AGGTTAATTCTTTTAATCGATTTGGCGTTGTTGG-CGTGGCATT-AAATGAA-AAGCAGCA--AC--AGG-TCGCCAAGCA--GG-CAGACCCA-GGCAAA--C-AAAACA---ATACAA----AGTAT----AAG-AAC-ATTT---GCA----TCTGGGTTGAC-GC-AAATAGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-CA-GGCA----AACACAA--CAA---A-----GCATACA-------AA-------TTGG-CATTCCGGGTT-GACC-CCAAATGAT-------------T-ACAGGCTCGACCAA--AGCAGG----GAG-A---C----CAG-C--AAA---A-AAC---AACAT--CAC-AGCAA-----TATAAG---CATAGAAA--G-TT-GCCA---TTCCGGG--TTGA-CA-GCAAATGATGGCCATTTTACCTTTTAAGTCAACAGGTCGCCAAGC--GACAGACCCAGCAAA------CACAAC-A-AGCAAAACAAATTATAAAGTAGCATAAA---TTG-CAGACCGGGTTTAAACCGAAAATGGCAAATTTACTTATTAAAATCTT-GCCGCA-TTGGTTTGTTCCGGGTTGATT-----CAA-ACATA
gi|21 : tatgaaaAAATG-TTAGCCAT--TCC--GG--TTGA-CT-GCAA---ATGACCA-TTTATCTTTCA--GCAACgtaccaaaatatttacacttaaaaatatcaatcactcttcacagttcaatcaagcaatcactctcagttcaatgtttgcaatcatactaaaacaaacagtcttgcagccacaaaaaatgtcactatcagtggaatggatgccgcaaatgcccatggaccaggaatgaaagtcaccccacacacagggagccccagatccactggaccacgaccaacccatttgataatctattcccaacagagggtgtcagggaacacaatctacaccacacgtcactgttgaaacccccctgctatccccttgttatatgttaaaaacagttgagcgaggtgtaattatcaccaggacaaaagttgatctagtcaataatgagaccctaagcttaatatataagcccttcctaacagcagtaccttgcaggtcgctgccctataaaccaggtatgtgccctctccatgcgccatatctaccgaaatcataagatccacgttagccaaatttgaaacaaatgagttgtcgttaagtagagcaggttttgtacttggcttgcccctttgttttgctatggatttttgaaatgattaatatgggttgcccaaatcataaccccacaaggaggatggatatccctccaactagcaagtagaaaacc
gi|22 : aacatATA----CAGTCAAACA---T-TGT---CACAATC---------------A--G-TC-TGTAGAAAAGGG-AT-T-TGTATACC-GAGCCCGATGCCctatcattgc
gi|4 : AACGA---CAGAATGTGGTTATTTT-CTG---TTTTA-AATA----CAGCTAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATGCCC---ATACCAG-----TTTCCTCATAAGA-CAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATGGAGGAAAT--TGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGGA--AC--AAG-TCGGCAAGCA--GGGCAGACCC--AGCAAA--C-AAAACA---ATATCA----AACAC----CGC-CAC-AATT---GTGC-ATTCCGGGTTGA-CGC-AAATGGCCTATTACAGTTGCCCCAGC-GG-TCCACC-AG-AGCA----AATAGAA--CAA---T-----TC-TATA-------AAGC-----TTGGACATTCCGTGTTGGACC-CAGAATG--------CTTCTTAT-ACAGG-TCG-CCAAGGAGCAAGGCGTGGGCAAGGCTACGCAGCCGAAAGGCGA-AACCGAAACAGAGCACAAGCAAAGAGTTATAAG-ACTATAGAAGAGG-TT-GGCATGGTTCCGGGGACTGAGCC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTTT-AAGTAGCATAAAGGTTTGCCAGACCGGGTT--GACCGCAAATGGC-AATTTACCT-TTCAAATC-TAGCTGCATTT-GTTTGTTCCGGGTTGATTTCTGGCAACACATA
gi|5 : GAATGTGGTTATTTT-CTG-------A-AATAATG-CAGCTAAAAA---T-T-TGTCCACA-CCTA--TC-TGTTTTGGA--GATCATGTAGAAAAGGG-ATCT-TGTATGCC-GAGCCCGATGCTACAGCCCGAAGC-TCGAGCAAAA-TACAC---ATACCAG-----TTTCCTCATAAGAATAAAGGCA-T-TATATCTTTATTTATA-TAGA--TGCTA--TTA-T-CT-ATTAAT-GAGGAAAT---GAGAACCAAAA-TA-A-TTTAATTCTTTTA-TTGATT-GGCGTTGTTGGTCGTGGCATTAA--T-AA-AAGCAGCAGGAC--AGGTTCGCCAAGCA---GGCAGACCCAGAGCAAA--CAAAAACA---ATCACA----AAGCA----AGC-AAC-ATTT---TGGC-ATTCCGGGTTGACCGC-AAATG--CTA-TACAGGTCGCCCAGCAGG-
gi|6 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgc-AGCA----AACAAAA--CAA---T-----A--TACAGTATTATAAGCAACATTTGG-CATTCCGGGCTG-ACAGCAAA-TAGC-----------TAT-ACAGG-TCG-TCAA-G-------C--AAACA---C-------------------AAC---AACAG----CAAACAAAG---TATAAA---CATAGAAAGGT-TT-GCCAT--T-CCGGG--TTGA-TC-GCAA---ATGGCCA-TTTACCTTTTA--TCAACAGATAGCCAAGCAGGACAAACCCAGCAAACAAATGCACAACAACAGC-ATGCAGATTAT-AAGTAGCATAAAGGATTGCCAGACCGGGTT--GATCGAAAATGGC-AATTTACCT-TTAAAATC-T-GC--------------TCCGTGTTGATT----GCAA-ACATA
gi|7 : ---CAGATCGTGGTTATTTT-CT----T---A-AATAAAAGCAGTCAAAAC---TAT-T---TATTACCTC--TC-TGTTT-GAA--ATGCATGTAGA------------------CC-TAGCTCGATGCCAAAGCC--GACC-TTGAGC-AAAATGCCAATTATAGCAA-----TTTCCTTATAAGA-TAAAG-------ATATTAT-ATTTATG-TAGA--TGCTA--Tgtaccaaaatatttacactttaaaaatattaatcactcttcacagtcctatcaatcaatcaatcaatcaatcagtccacagttcaatcaatttcagttcaatgttttgcaatcatacatgtacctaaaacaaacagtctacagcacaaaatttgatacatcagtggaatgaatgggcgcatgtggagccacgtgaccaggaactg
blockSeqs : TGC A T TTTT T AAAG A A G GTC A . T . GT ATC G T C CG . A A ATT C . A . T T T . . TA . TA A AC CA A C GT A T T AAATG . C GGAC T . AG . A GC C AGTGTAAGA . . GTGC CC . G C T G A . CA . . TATACAGTATTATAAGCAACAT A A GG G A CTTCTT . C A GGAGCAAGGCGTGGGCAAGGCTACGCAGCCGAAAGGCGA CGA GAGCACAAGCAAAGAGT AC A A . A TGGTT GA G . ATG T . A CAAATG A C . . GGT C . . . TA TGCATTT TCTGG C
blockSeqs : . T . AAAT . ATG . . . T A . . . AT GT . . C . . A A . C . . . T . . . . T . . A TT CA . . GG . . T AAT . G AC . . A . . . C AGTAT . . TGGC C . G C . T A . AG . . TTCTATAAAGC . A G . A GCT . . . AGCAGGGAGACCAGCAAAA . GCAAACAAAG . A A . . TTC . . . . . . A . A . . . GGA C . . . T . G .
blockSeqs : . T . AAAT . . . . . . G . . . TT AT . . A . . A A . G . . . A . . . . T . . G TT CA . . GT . . . AT . C AC . . . . . . T AACAC . . GCA C . . C . G . . . . AGCATACAAA . A G . . AT . . . GCAAACAC . TCACAGCAA . A G . . TT . . . . . .
blockSeqs : . A . TTTT . . . . . . C . . . TG AT . . A . . A A . G . . . T . . . . T . . . T T . . T . . . A . . . . . . . . . A AAGCA . . . . . TT . . . . .
blockSeqs : . A . T . . . . . . A . . . GT GC . . C . . A . . C . . . T . . . . . . .
blockSeqs : T . . . . . . . . A . . . AT AT . . C . . . . . C . . . A . . . .
blockSeqs : . . . . . . . . C . . . TG GT . . A . . . . . G . . . . . .
blockSeqs : . . . . . . . . . T . . .
blockSeqCons : NNNT*** **** *** A** ** NT GT** ***** ** ** T** TT** CA AC**** ** A* ** *** AANAN********
originalCons : AACGA---CAGANTGTGGTTATTTT-CTG---T---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAAT--CGAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----AATAT----AGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC------CCTCTTAT-ACAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAGG-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
finalCons : AACGA---CAGANTGTGGTTATTTT-CTGNNNT---A-AATA----CAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGGGT--T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTAT--CT-AT--ATAGAGGAAATT--GAGAACCAAAA-TA-AGTTTAATTCTTTTA-TCGATT-GGCGTTGTTGGTCGTGGCATT-A--T-AA-AAGCAGCAAC----AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACA---ATANCAAANAN--------AGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC------CCTCTTAT-ACAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAGG-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTTAGCAGGGGTGAGGTGCACCTTATCATTAGACAAGAATTGGTCAATGTTTCTAATGAGGTCCGGATGCTTGATATAAGCCCCTCTTAACTGCAGTACCCTACACTCTGTCGCCCTATTAAATCGTTCACGAGTTTCCATAGCCATATTGTCTTCAGAAAATCTATAACATCTCGAGGCAAAATTTGGGACCAAATGAGTGTATTAAGACACTCAGCGATTTCCATAAGGTCTTGTTTCATTTTTGTTATTAATGAACAATGGTACAGTTGGGTCCCCTAAATAATTTCCCCACAATGAACAAAAAGTCAGGGTATCCCCCCTCTTAGTTAAGTATAAAACCTTTTCCTTAAATGTATAAAATTTAGACCTGAATAGCCTTGCCACCATAGTTCTATGCCTAACCTACCACACCTAAATGTACCCCCATGCCCAAGTAGGGCTGCCTGAAATGCATGCTTAATTACTCATGACCCAACACACTTAGGAAAGTATAAATTACAAACAAATAGGACACCGAATATGTGACTTGAAAACCTGTGACTTCCATCTGCTTGTTTCCCTAACGGTATCAGGATCACATCCTTGTTGGTAAGCAGAAATAGCAGCTCCTATTCTGAATGAATTCGACTTGTATCTACCACTCCTAAACCTAGTAGGTTTGTAGCTATATGCAAAACAGATGTGAACTGATACCTTGTTAATGGACTATAGTCAAAATGACAAAACAATAGCCCACTGACCATGGGTCTAACAGCCAGTAACTCCAACATGAATCTAACTGGGCACTGTGAACTATATACTTTGTCAATGCTAATGTTTAC
Unaligned ( gi|8 ): CGGGGTAGAATTTGGGACCATATTAGTGTGGCTTGTGGAAAATGGCCCATAATTTCCGTCAAATTCTTCCTAACTTTTGCAATGAGACGAAATACATGTAAATCCAATGAATAAAAATTGGACCCAATGCCATTACCACCACAATGGATAAGTATAAAATCTAGGGCCTTTTCATATAAAAGTTTTTTCTTTAGGTCAGCAACTTTCATACCCGAGTAACCCTGTCACTATAATGTCAATCCTACTCTTTCCGAGCCAAGGTTGACCCCATCAGGTCTAGTAAATGTTTGCATGAATGCTCGTTTGATTGAAGATCAAGAACCCACACA
Unaligned ( gi|9 ): GAGGACACCGAATGTAAGAATTGTATGAATTTGATTTCCATCGACCAGCTTCCATTATACTTTCTCCCAGGCATCCTGCTTCAAATGCCAGCAGTAGCCTTCCTATTAAATGAGTGAGCCCTATATCTATCGCTTCCTTCAACTGATTTTAACACTTTATCCAAACTTGTGAAAAATGATAACTGGTCAATGGCTGTCACTCGACATGAACAAGTAATGACCCTGAACGTTTAAGGCCTCATGGAAAGAAACTTTTTATAAATTACTAACTGGGCAATGTAATATTGTTAACTTGATCAATGCAGAAGATTTACCCCC
Unaligned ( gi|11 ): TTCTAAAATATCAATCACTCTTCAACGTGTAATGTTTTGCAATCAATCAAATAATGAATAAACCTACAGTCAGCATCACAAACTTGACATATCAGTGGAATGGATGGGCGCTAATGCCAAATGACCAAGAACTGAAAGTTCGAGGTCATCCCACATATGGGGAGCCCCATTCCTCTGGACCACGACCAACCACCTTAATTTATTATCTTAGCAGGGGT
Unaligned ( gi|14 ): AGATTCACGTGGTAAATGGGACCAAATGAGTTTGTATAAGGTTGAAGCTCGGTTATTTTCTCAGGGCTTTGTCCCATTATAATTTGGATCCCCAAATCACTATCCCCACAATGAAGTTGGGATAACCCTCCAACTTTGCCAAGTATAAAACTTTTCTGCTACTAATCC
Unaligned ( gi|17 ): AGCCCCTCCTTACACAGTACCTTTGCAGGTCGGTGCTCTATTAAACCGTTCATGTGCCCTCTTCATAGCCATGTCTATAGGAAATCACAAGATCCACGTAGCAAATTTGGCACCAACTGAG
Unaligned ( gi|18 ): ATCTATCGCAACAGAGGGTACCGGGAAACACAAATCCACACTGTACCCACTGTTGACTGTTGAAATACTCAAGGCACCCCCCACCTCACCTGTATATAGTTGAAACATTTGAG
Unaligned ( gi|19 ): CCAATGTAGTCTAGACAGGATGACACACATTGTAGCCTGAATGGGAAGATACTCCAATGTAGCCTGGACAGGGTAATACTCCAATGTAGCCTGTACAAGATGATA
Unaligned ( gi|20 ): AAAGGACATCAAATATACGACTTGTATACTTTTGATTTCCAGCGCCCAGCTTCCATAATGGTTTCTGGGGAACATCCAGCTATATCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 111 111 111 111 1 11111 11 22222222 1 22222 222222 222 11 11 222 222222222 11111111 1 1 1 1 1111 2222 11 77777777777777777777777777777777 1 11 1 77777777777777 1 1 1 4444444444444444444444444444444444444444 111 33333333333333333 333 22222 11 111 11 333333 1 1 1 333 11 1 1 111 33333333 33333 1
lowQualScore : 111 1 5 111 5 222 4 4 222 666 4 4 66 77 5555 4 4 1 66 5 3 5 888 5 22222 5 5 1 5 5 66 66 888 6 99 3 44 22222222 8 66 8 8 0 88888 8 3 000000 8 111 88 11 8 555 1 555555555 1 1 8 8 55555555 5 0 6 2 0 8 3 0 7777 1111 0 33 44444444444444444444444444444444 5 3 77 5 3 00000000000000 0 0 0 1111111111111111111111111111111111111111 777 33333333333333333 222 3 3 8 8 11111 11 8 8 444 8 0 33 7 888888 7 3 3 3 111 6 88 3 3 777 22222222 55555 3
lowQualScore : ... . . ... . ... . . ... ... . . .. .. .... . . . .. . . . ... . ..... . . . . . .. .. ... . .. . .. ........ . .. . . . ..... . . ...... . ... .. .. . ... . ......... . . . . ........ . . . . . . . . .... .... . .. ................................ . . .. . . .............. . . . ........................................ ... ................. ... . . . . ..... .. . . ... . . .. . ...... . . . . ... . .. . . ... ........ ..... .
lowQualScore : 777 0 0 444 0 222 4 4 222 888 4 4 11 11 8888 4 4 0 99 0 2 5 888 6 55555 0 0 0 7 0 99 99 333 7 22 8 66 00000000 0 00 0 0 6 66666 0 2 888888 0 000 66 00 0 000 0 000000000 0 0 0 0 88888888 0 0 5 5 0 8 2 0 7777 2222 8 88 88888888888888888888888888888888 5 2 55 0 2 22222222222222 0 0 0 2222222222222222222222222222222222222222 555 88888888888888888 000 2 8 0 0 66666 00 0 0 000 0 8 88 3 333333 3 3 3 3 777 7 33 3 3 777 33333333 00000 3
consensus : AACGA---CAGANTGTGGTTATTTT-CTGAAATA-AATGCAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAATCGAGAAC-----C-AAAATA-AGTTTAATTCTTTT-ATCGA-TTGGCGTTGTTGGTCGTGGCATTA-AT-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACAGC-ATANCA----A----ANANAGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC------CCTCTTAT-ACAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAGG-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
Reference ( family-1646 ) : AACGA---CAGANTGTGGTTATTTT-CTGNNNTA-AATACAGCCAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GNTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCCANAGCC--GAGC-TCGAGCAAAAATGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCNT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATAGAGGAAATTGAGAAC-----C-AAAATA-AGTTTAATTCTTTT-ATCGA-TTGGCGTTGTTGGTCGTGGCATT--AT-AA-AAGCAGCA--AC--AGG-TCGCCGAGCA--GGGCAGACCCA-AGCAAA--C-AAAACA---ATANCA----A----ANANAGC-AAC-ATTT---GCGC-ATTCCGGGTTGACCGC-AAATGGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-AG-AGCA----AACAAAA--CAA---T-----GC-TACA-------AAGC-----TTGGACATTCCGGGTTGGACCGCAAAATGGC------CCTCTTAT-ACAGG-TCG-CCAA-GAGCAGGGC--GAGCA---C----CAGCC--AAAGC-A-AAC---AACANA-CACAAGCAAAG---TATAAG-ACCATAGAAAAGG-TT-GCCAT--TTCCGGG--TTGA-CC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTAT-AAGTAGCATAAAGG-TTGCCAGACCGGGTT--GACCGAAAATGGC-AATTTACCT-TTAAAATC-T-GCCGCA-TT-GTTTGTTCCGGGTTGATT----GCAA-ACATA
gi|1 : TATTTT-TTGAAATA-TATGCAGTCAAGGAGTTT-T-C---CGTTACCTACATCATGTTT-GAATTGC-CATGAAAAAGAGGCTGC-T-GGTATAC--GAGCCCGACGCCAATGTC--GGGCCTCAAGCACAT-TGCAA---ATG--AGGCGTTTTTCCTCATAAGA-TAAAGGCACTCTATATTAT-ATTTATA-TAGAAATGCTAGATTACT-CTTAT--ATAGAGGAAA----GAACAAAAAC-AAAATA-ACATTAAATTTTTT-ATTGA-TTGGCGTT-TTGGTCGTGGCATT---T-AATAAACAGTAT-ACCAAGG-TCGCTGGCCAACGGGCAGACCCA-AGCAAAAAC-AAACCAGCTATAACAGAGTA----ATATAGCCAGCGATATAAAGCGCCATTCCGGGTTGACCGCGAAATGAC-TA-TACAG-TCGCCAAGCAGGGCAGACCCAGCAGCACAACAACAAAATACAAAAGTAAGCAGC-AATA-------AAGG-----TTAGAC-TTCCGGGTTG-ACCGCAAAATGGCCATTTACCTTTCATAACAGG-TCG-CCAA-GA----GGC--GA-C----C----CAGC----AAAC-ATAAC---AGCATA-CAT---C--AG---TATAAGCATCAT---AAAGGTTT-GCCAA--T--CGGG--TTGA-CCGGCAA---GTGGCTA-TTT-CCTTT
gi|10 : atgatctgaaaatgcatgaaaaccaagagcagtatctttctagcttaagacattaatgttatctcaacgggaagggaggcgggtttataatcaaggatgccaagaattttgctcAACGA---CAGAATGTGGTTATTTTTCTGTTTTA-AATAAAGCTAAAAAA--T-T-T---CACAAC-TA--TC-T--TT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATG-CA---ATACCAG-----TTTGCTCATAAGA-TAAAGGCA-TCTATATCTT-TTTCATA-TAGA--TGCTA--TT-----T-AT--ATaaatatgtttaactgttaaattgtgaatttccaaattgaacaagcaacagtattagcagcccacgtaaagcacagtatacaatcaagcagttatgtttttgttccaggattgacctgcgaaacattgcaccaaaatattaacacttctcaaatatcaatcatcttcagagttcaatgttttgcaatcaatcaaaaacctacagtcagcatcacaaatcttgcatatcagtgaatggatggcgctaatgccacatgaccaagaactgaaagttcaaggtcacacccacatatgggagccccatttcccacttgaccaaacaacgaccaccacctttttacttaagcggttgtcaggaagcacggattcaacacctcatctgtaaaatactcaaccctgtatgtttgttcaaaaaatatggaattacataagaagggtgaggtgcaccttatcactatacaaagaattggtcaatgttttaacaatgtctggaatgctgaaataaagcctctctaactgcagtaccctacactctgtcgcccattaaatcgtgcacgaggttacatagcccatatgtcttaagaaaattgaaagatacaagactaaattgttgaccaaatggtatttaagacaactcagtaatcccataaggtcttatggcttcattattgttaaggaacaatgtacacttggtcccctaaataattcagcaagaagtcagggtattccatcccacttgattaagtataaaac
gi|12 : tacagtgtagcctgggcagacctcatgacctgaaattgcatgaaaaccgagagcagtatctgcctaacttaaaacataaatttgtttaaaagagaagggagggatggggttttaaatcAACGATGCCAGAATCTGGTTATTTT-CTGAAATA-AATGCAGCTAAGAA---T-T-T---TACAATGTA--TC-TGTT--GAA--GATCATGTAGAAAAGGG-AT-T-CGTATGCC-GAGTCCGATGCTACAGCC--GAGC-TCGAGCAAAA-TGCCA---ATACCAG-----TTTCCTCATAAGA-TAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TT
gi|13 : aatTTGATA-TAAA--TCCTG--TTA-T-CT-AT--ATAGAGAGAAACAAAAAC-----T--AAATACAGTTTAATTGTTAT-ATCGG-TTGGCATTGTTGG-CTTGGCATT--A----------------------------GAGCA--GTGCAAACCC--AGCAAA--C-ACAACAGC-ATACAA----AGTGTAAGAAGC-AAA-ATCT---G
gi|15 : ggattgagtaattgatgatcag---CAGATTGTGGTTATTTT-CTG----A-AATAC--------------T-T---CACAACCTG--TC-TGTTT-GAA--GTTCCTGTAGAAAAGGG-AT-T-TGTATACA-GAACCCGATGCCAAAGCC--GAGC-TCGAGC-AAAATGACA---ATAGCAA-----TTTCCTCATAAGA-TAAAGGCA-TCCATATTAT-AATTGTATTACA--TGCttgaccgat
gi|16 : tgc---CAGATTTTGGTTATTTT-TTGAAATATAATGCAGCCAAAGT---T-T-TT--CGTTACCTC--AC-TGTTT-GAA--GTGCATG--AAAAAGAG-GC-TGTGTATACCTGACCCCGATGCCAAGGTT--GGGC-TCAGGCACAT-TGCAA---ATAGTGG-----TTTCCTCATAAGA-TAAAGGCA-TCTAT
gi|2 : A--TTA-TACT-A---ATAGAGGAAATTGAGAAC-----CAAAAATA-AGGTTAATTCTTTTAATCGATTTGGCGTTGTTGG-CGTGGCATTAAATGAA-AAGCAGCA--AC--AGG-TCGCCAAGCA---GGCAGACCCA-GGCAAA--C-AAAACA---ATACAA----A----GTATAAG-AAC-ATTT---GCA----TCTGGGTTGA-CGC-AAATAGCCTA-TACAGGTCGCCCAGCAGG-CAGACC-CA-GGCA----AACACAA--CAA---A-----GCATACA-------AA-------TTGG-CATTCCGGGTT-GACC-CCAAATGAT-------------T-ACAGGCTCGACCAA--AGCAGG----GAG-A---C----CAG-C--AAA---A-AAC---AACAT--CAC-AGCAA-----TATAAG---CATAGAAA--G-TT-GCCA---TTCCGGG--TTGA-CA-GCAAATGATGGCCATTTTACCTTTTAAGTCAACAGGTCGCCAAGC--GACAGACCCAGCAAA------CACAAC-A-AGCAAAACAAATTATAAAGTAGCATAAA---TTG-CAGACCGGGTTTAAACCGAAAATGGCAAATTTACTTATTAAAATCTT-GCCGCA-TTGGTTTGTTCCGGGTTGATT-----CAA-ACATA
gi|21 : tatgaaaAAATG-TTAGCCAT--TCC--GG--TTGA-CT-GCAA---ATGACCA-TTTATCTTTCA--GCAACgtaccaaaatatttacacttaaaaatatcaatcactcttcacagttcaatcaagcaatcactctcagttcaatgtttgcaatcatactaaaacaaacagtcttgcagccacaaaaaatgtcactatcagtggaatggatgccgcaaatgcccatggaccaggaatgaaagtcaccccacacacagggagccccagatccactggaccacgaccaacccatttgataatctattcccaacagagggtgtcagggaacacaatctacaccacacgtcactgttgaaacccccctgctatccccttgttatatgttaaaaacagttgagcgaggtgtaattatcaccaggacaaaagttgatctagtcaataatgagaccctaagcttaatatataagcccttcctaacagcagtaccttgcaggtcgctgccctataaaccaggtatgtgccctctccatgcgccatatctaccgaaatcataagatccacgttagccaaatttgaaacaaatgagttgtcgttaagtagagcaggttttgtacttggcttgcccctttgttttgctatggatttttgaaatgattaatatgggttgcccaaatcataaccccacaaggaggatggatatccctccaactagcaagtagaaaacc
gi|22 : aacatATACAGTCAAACA---T-TGT---CACAATC---------------A--G-TC-TGTAGAAAAGGG-AT-T-TGTATACC-GAGCCCGATGCCctatcattgc
gi|4 : AACGA---CAGAATGTGGTTATTTT-CTGTTTTA-AATACAGCTAAAAA---T-T-T---CACAACCTA--TC-TGTTT-GAA--GGTCATGTAGAAAAGGG-GT-T-TGTATGCC-GAGCCCGATGCTACAGCC--GAGC-TCGAGCAAAAATGCCC---ATACCAG-----TTTCCTCATAAGA-CAAAGGCA-TCTATATCTT-ATTTATA-TAGA--TGCTA--TTA-T-CT-AT--ATGGAGGAAATTGAGAAC-----C-AAAATA-AGTTTAATTCTTTT-ATTGA-TTGGCGTTGTTGGTCGTGGCATT--AT-AA-AAGCAGGA--AC--AAG-TCGGCAAGCA--GGGCAGACCC--AGCAAA--C-AAAACA---ATATCA----A----ACACCGC-CAC-AATT---GTGC-ATTCCGGGTTGA-CGC-AAATGGCCTATTACAGTTGCCCCAGC-GG-TCCACC-AG-AGCA----AATAGAA--CAA---T-----TC-TATA-------AAGC-----TTGGACATTCCGTGTTGGACC-CAGAATG--------CTTCTTAT-ACAGG-TCG-CCAAGGAGCAAGGCGTGGGCAAGGCTACGCAGCCGAAAGGCGA-AACCGAAACAGAGCACAAGCAAAGAGTTATAAG-ACTATAGAAGAGG-TT-GGCATGGTTCCGGGGACTGAGCC-GCAA---ATGGCCA-TTTACCTTTCA--TCAACAGGTCGCCAAGCAGGACAGACCCAGCAAA------CACAACAA-AGC-AAACAAATTTT-AAGTAGCATAAAGGTTTGCCAGACCGGGTT--GACCGCAAATGGC-AATTTACCT-TTCAAATC-TAGCTGCATTT-GTTTGTTCCGGGTTGATTTCTGGCAACACATA
gi|5 : GAATGTGGTTATTTT-CTGAAATA-A-TGCAGCTAAAAA---T-T-TGTCCACA-CCTA--TC-TGTTTTGGA--GATCATGTAGAAAAGGG-ATCT-TGTATGCC-GAGCCCGATGCTACAGCCCGAAGC-TCGAGCAAAA-TACAC---ATACCAG-----TTTCCTCATAAGAATAAAGGCA-T-TATATCTTTATTTATA-TAGA--TGCTA--TTA-T-CT-ATTAAT-GAGGAAAT-GAGAAC-----C-AAAATA-A-TTTAATTCTTTT-ATTGA-TTGGCGTTGTTGGTCGTGGCATTA-AT-AA-AAGCAGCAGGAC--AGGTTCGCCAAGCA---GGCAGACCCAGAGCAAA--CAAAAACA---ATCACA----A----AGCAAGC-AAC-ATTT---TGGC-ATTCCGGGTTGACCGC-AAATG--CTA-TACAGGTCGCCCAGCAGG-
gi|6 : aagatactccaatgagcctggatggagatactccaatcatagcctggacaggatatacaccattccaatgaagtctgaaaggggcaataccaatgtatccttggacaggatgaatcctccaatggtacctggataggatgatattacagtgtagcctgggcagaagtcctcatgaacctgaaattgcatgaaaacgcgagaggcagtatcttcccaacataaaaacattaaatttgttttaaaaagggaagggagggaatggggtttttaaatcaagatgc-AGCA----AACAAAA--CAA---T-----A--TACAGTATTATAAGCAACATTTGG-CATTCCGGGCTG-ACAGCAAA-TAGC-----------TAT-ACAGG-TCG-TCAA-G-------C--AAACA---C-------------------AAC---AACAG----CAAACAAAG---TATAAA---CATAGAAAGGT-TT-GCCAT--T-CCGGG--TTGA-TC-GCAA---ATGGCCA-TTTACCTTTTA--TCAACAGATAGCCAAGCAGGACAAACCCAGCAAACAAATGCACAACAACAGC-ATGCAGATTAT-AAGTAGCATAAAGGATTGCCAGACCGGGTT--GATCGAAAATGGC-AATTTACCT-TTAAAATC-T-GC--------------TCCGTGTTGATT----GCAA-ACATA
gi|7 : ---CAGATCGTGGTTATTTT-CTTAAATA-AAAGCAGTCAAAAC---TAT-T---TATTACCTC--TC-TGTTT-GAA--ATGCATGTAGA------------------CC-TAGCTCGATGCCAAAGCC--GACC-TTGAGC-AAAATGCCAATTATAGCAA-----TTTCCTTATAAGA-TAAAG-------ATATTAT-ATTTATG-TAGA--TGCTA--Tgtaccaaaatatttacactttaaaaatattaatcactcttcacagtcctatcaatcaatcaatcaatcaatcagtccacagttcaatcaatttcagttcaatgttttgcaatcatacatgtacctaaaacaaacagtctacagcacaaaatttgatacatcagtggaatgaatgggcgcatgtggagccacgtgaccaggaactg
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TCTTAGCAGGGGTGAGGTGCACCTTATCATTAGACAAGAATTGGTCAATGTTTCTAATGAGGTCCGGATGCTTGATATAAGCCCCTCTTAACTGCAGTACCCTACACTCTGTCGCCCTATTAAATCGTTCACGAGTTTCCATAGCCATATTGTCTTCAGAAAATCTATAACATCTCGAGGCAAAATTTGGGACCAAATGAGTGTATTAAGACACTCAGCGATTTCCATAAGGTCTTGTTTCATTTTTGTTATTAATGAACAATGGTACAGTTGGGTCCCCTAAATAATTTCCCCACAATGAACAAAAAGTCAGGGTATCCCCCCTCTTAGTTAAGTATAAAACCTTTTCCTTAAATGTATAAAATTTAGACCTGAATAGCCTTGCCACCATAGTTCTATGCCTAACCTACCACACCTAAATGTACCCCCATGCCCAAGTAGGGCTGCCTGAAATGCATGCTTAATTACTCATGACCCAACACACTTAGGAAAGTATAAATTACAAACAAATAGGACACCGAATATGTGACTTGAAAACCTGTGACTTCCATCTGCTTGTTTCCCTAACGGTATCAGGATCACATCCTTGTTGGTAAGCAGAAATAGCAGCTCCTATTCTGAATGAATTCGACTTGTATCTACCACTCCTAAACCTAGTAGGTTTGTAGCTATATGCAAAACAGATGTGAACTGATACCTTGTTAATGGACTATAGTCAAAATGACAAAACAATAGCCCACTGACCATGGGTCTAACAGCCAGTAACTCCAACATGAATCTAACTGGGCACTGTGAACTATATACTTTGTCAATGCTAATGTTTAC
Unaligned ( gi|8 ): CGGGGTAGAATTTGGGACCATATTAGTGTGGCTTGTGGAAAATGGCCCATAATTTCCGTCAAATTCTTCCTAACTTTTGCAATGAGACGAAATACATGTAAATCCAATGAATAAAAATTGGACCCAATGCCATTACCACCACAATGGATAAGTATAAAATCTAGGGCCTTTTCATATAAAAGTTTTTTCTTTAGGTCAGCAACTTTCATACCCGAGTAACCCTGTCACTATAATGTCAATCCTACTCTTTCCGAGCCAAGGTTGACCCCATCAGGTCTAGTAAATGTTTGCATGAATGCTCGTTTGATTGAAGATCAAGAACCCACACA
Unaligned ( gi|9 ): GAGGACACCGAATGTAAGAATTGTATGAATTTGATTTCCATCGACCAGCTTCCATTATACTTTCTCCCAGGCATCCTGCTTCAAATGCCAGCAGTAGCCTTCCTATTAAATGAGTGAGCCCTATATCTATCGCTTCCTTCAACTGATTTTAACACTTTATCCAAACTTGTGAAAAATGATAACTGGTCAATGGCTGTCACTCGACATGAACAAGTAATGACCCTGAACGTTTAAGGCCTCATGGAAAGAAACTTTTTATAAATTACTAACTGGGCAATGTAATATTGTTAACTTGATCAATGCAGAAGATTTACCCCC
Unaligned ( gi|11 ): TTCTAAAATATCAATCACTCTTCAACGTGTAATGTTTTGCAATCAATCAAATAATGAATAAACCTACAGTCAGCATCACAAACTTGACATATCAGTGGAATGGATGGGCGCTAATGCCAAATGACCAAGAACTGAAAGTTCGAGGTCATCCCACATATGGGGAGCCCCATTCCTCTGGACCACGACCAACCACCTTAATTTATTATCTTAGCAGGGGT
Unaligned ( gi|14 ): AGATTCACGTGGTAAATGGGACCAAATGAGTTTGTATAAGGTTGAAGCTCGGTTATTTTCTCAGGGCTTTGTCCCATTATAATTTGGATCCCCAAATCACTATCCCCACAATGAAGTTGGGATAACCCTCCAACTTTGCCAAGTATAAAACTTTTCTGCTACTAATCC
Unaligned ( gi|17 ): AGCCCCTCCTTACACAGTACCTTTGCAGGTCGGTGCTCTATTAAACCGTTCATGTGCCCTCTTCATAGCCATGTCTATAGGAAATCACAAGATCCACGTAGCAAATTTGGCACCAACTGAG
Unaligned ( gi|18 ): ATCTATCGCAACAGAGGGTACCGGGAAACACAAATCCACACTGTACCCACTGTTGACTGTTGAAATACTCAAGGCACCCCCCACCTCACCTGTATATAGTTGAAACATTTGAG
Unaligned ( gi|19 ): CCAATGTAGTCTAGACAGGATGACACACATTGTAGCCTGAATGGGAAGATACTCCAATGTAGCCTGGACAGGGTAATACTCCAATGTAGCCTGTACAAGATGATA
Unaligned ( gi|20 ): AAAGGACATCAAATATACGACTTGTATACTTTTGATTTCCAGCGCCCAGCTTCCATAATGGTTTCTGGGGAACATCCAGCTATATCA