lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 222222222222222 6666666666666666666666666666666666666666666 111111 2222222 111 111 111111 1111 111111 2 11 11 11111111 11 222222222222 2222 22 444 7777777777 1111 6666 2222222 1 8888888888888888888888888888888888888888888888 11 1111 1 22222 333333333 11 111 222222 22222 555555555555555555555555 11 2222222 2222222222222 3333 11 11 1 111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222 11 22222 1 1 11 1 1 9999999999999999999999999999999999999999999999 222222222222222222 1 1 1 22222 1 1 3333333 1 2222 11 1111 1 1 22222 22 11 2 1 1
lowQualScore : 5 5 5 5 999999999999999 0000000000000000000000000000000000000000000 444444 5 5 0 6666666 0 999 1 2 6 5 1 444 66 444444 5 0000 5 333333 888 2 11 22 66 00000000 4 00 4 66 66 4 66 222222222222 0000 2 3 5 999 5 44 0 77 333 4 8888888888 777 6 4444 0 5 5 8 6666 666 5 7 3 1111111 2 6 2222222222222222222222222222222222222222222222 11 0 7777 5 8 8 5 9 0 0 00000 222222222 33 99 111 333333 33333 000000000000000000000000 1 11 8 0 4444444 0 0000000000000 0000 3 8 11 8 5 8 0 0 5 88 0 8 3 3 0 555 0 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111 8 00 11111 0 6 0 6 88 6 7 3 3 7 8888888888888888888888888888888888888888888888 2 4 888888888888888888 0 3 3 3 55555 7 3 3 6666666 3 6 8888 88 8 6666 3 3 55555 7 00 88 6 0 3 0 7 5
lowQualScore : . . . . ............... ........................................... ...... . . . ....... . ... . . . . . ... .. ...... . .... . ...... ... . .. .. .. ........ . .. . .. .. . .. ............ .... . . . ... . .. . .. ... . .......... ... . .... . . . . .... ... . . . ....... . . .............................................. .. . .... . . . . . . . ..... ......... .. .. ... ...... ..... ........................ . .. . . ....... . ............. .... . . .. . . . . . . .. . . . . . ... . ............................................................................................................................................... ..... . .. ..... . . . . .. . . . . . .............................................. . . .................. . . . . ..... . . . ....... . . .... .. . .... . . ..... . .. .. . . . . . .
lowQualScore : 7 7 7 0 888888888888888 8888888888888888888888888888888888888888888 444444 0 0 1 2222222 2 000 4 5 9 0 1 555 99 444444 0 6666 0 222222 888 8 99 11 11 77777777 4 66 2 11 11 4 11 888888888888 3333 2 0 6 444 0 88 1 22 111 5 9999999999 777 7 2222 7 7 7 4 0000 999 7 0 3 7777777 5 5 6666666666666666666666666666666666666666666666 00 6 0000 8 0 0 0 6 8 8 22222 000000000 77 22 777 222222 00000 222222222222222222222222 0 00 0 8 2222222 8 8888888888888 4444 2 0 00 0 6 0 8 8 6 22 8 8 5 2 0 000 8 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222 0 22 00000 0 0 0 7 33 0 3 3 3 3 0000000000000000000000000000000000000000000000 3 3 000000000000000000 7 3 3 3 00000 3 3 3 7777777 3 0 3333 33 3 7777 3 3 77777 3 77 33 7 7 0 0 0 5
consensus : CGGTGT-GGA-ATGGGGACG-GA-CT--------TT-----CCGTG------------------TTNTTTT-----------------GCGCGTTTCCAGACTA------AGC-GTGCTCAGCAACGGAC-TTTTCGTG---G-TTTAAAAATC-TGACCAGAGACACANTATG-GACCCTGGAGA--A------AGA-A----AGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACGG--AATAN---C---G-TA--ATATC--CCA--T-GG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATTCTTC-AAAAAAACCCTAC-ACAAACTTGGAAAATAGATCG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCC--------------------TTGTT-----TTTTTT--T------GGAAAAT--GTT----GATTTNTCGTAAACC-CTT-GACAACGGACTTTTTTGTGT----NCTCTG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGA-CTNATTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---AGGCCAAAGAGAAG-AAA--AA-TGACCATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATACCCAACTGACAATATTTATGT---TTTA---AC---TAACA-TATACTTA-TTGGGGCCTT-ATAA---------------TAGC------------GATAAATA--CATGTATTACATGN--AA---------ATA--TA--A--GC-----------ATGGATGATTTCAATATGCGTCTG-AAANATGT--A--GTGTAGCATGTTATCCTT-GATATG-CCGTGTG--GACAATGAAACATCAATACACAC-TGTGT-ATTTATAATTAT---ATTTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGNATTTACATTAANTA-AGGATACNGACTTTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACCA--TGAACGCATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GATAGTTATTG--TTTTAACATG-AT-AC-CGGTA-CACAT-ATCATG-TTAC--ATATACTTAAACGNGATTTGTATCCTTGGATCATGTGTAAGA
Reference ( gi|4 ) : CGGTGT-GGA-ATGGGGACG-GA-CT--------CT-----CCGTGG-----------------TTTTTTT-----------------GCGCGTTTCCAGACTA------AGC-GTGCTCAGCAACGGAC-TTTTCG-G---G-TTTAAAAATT-GGACCAGAGACACATTATG-GACCCTACAGA--A------AGA-A----AGAAGT-CGTA-----AGTC---TTTATC--AAATCATTTT-TACGG--AATAT---C---G-TA--ATGTC--CCA--T-GA--GA------------TAGTATTTATATAACTAAATGTAC-C-AAAT-TTGGCCCACATTCTTCAAAAAAAACCCT---ACAAACTTGGAAAATAAATAGTACAAT-TTGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTCTGACACTGA-CTG-TATTTTCGTTGTTAAAAGATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCC--------------------TTGTT-----TTTTTT--T------GGAAAAT--GTT----GATTTATCGTAAACC-CTT-GGCAACGGATTTTTTTGTGT----GCTCTG---------TAATTGGTTCAAAT--TT---TTG-----GCACCGGA-CTATTTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAATACATTGTGGTTGAAC---TGGCCAAAGAGAAG-AAA--AA-TGACCATTAC-GATAGTATATTATTTA-AGTACGACTAATCGGACTA-ATACCCAACTGACAATATT--TGT---TTTA---ACTTTTAACA-TATACTTA-TTG----------AA---------------TAGC------------GATAAATACGCATGCATTACATGC--A----------ATA--TA--A--GG-----------ATGGATGATTTCAATATGTGTCTG-AAAAATGT--A--GTGTAGCATGTTATCCTT-GACATG-CCATGTG--GACAATGAAACACCAATACACAC-TGTGT-ATTTATAATTAT---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTTGCATTAATTA-AGAATGCTGACCTTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACCAA-TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTACTAAATGACTTT----GATAGTTATTG--TTATAACATG-AT-AC-CGGTA-CATATTATCATG-TTAC--ATATACTTGAACGAGA-TTGTATCCTTGGATCAAGTGTAAGA
gi|3 : CGGTGT-GGA-ATGGCGATG-GA-CT--------TT-----CTGTG------------------TTATTTT-----------------ACGCG-------------------C-GTGCTCAGCAACGGAC-TTTTCGTG---G-TTTAAAAATC-TGACCAGAGAAACAATATG-GACTCT---TA--A------AGA-AAGAAAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACGG--AATAT---C---G-TA--ATATC--CCT--T-GA--GA------------TGGTATT--TATAACC---TTTAT-C-AAAT-TTGGTAAACATTCTTC--AAAAAATCCTAC-ACAAACTTAAAAAA-AGATCG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACATCGATTATTCTTACT----CATTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAATATCAAATCATACATGCCTTGGTTTTTTTGTTTTTTTGTTGTT-----TTTTTT--T--------AAAAT--GTTGACAGATTTATCGTAAACC-CTT-GGCAACGGACTTTTTTG-GTTAAAATTTTGGCACCAGACTGATTGGGT--AAT--TT---CT------GCACCGGA-CTTATTGTGT--TT-----------A-TATGTATTATGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---AGGCCAAAGAGAAG-AAA--AA-TGACCATTAC-GATAGTATA----TTA-GGTACGACTATTCGGACTT-ATACCCAACTGACAATATTTATGT---TTTA---AA---TAACATTATACTTA-TTGAAGCCTTAATAA---------------TAGC------------GATAAATA--CATGTATTACAAGA--AAT--------ATA--TA--A--AC-----------ATGGATGATTTCAATGTG------------TAC--A--GTGTAGCTTGTTCTCTCT-GATATG-CCATGTG--GACAAATAAACATCAAT--ACAC-TGTGT-ATTTATAATTAT--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNGACTTATG-TACTTTTT-GTAAAAAGG-AAACTGAAACCAT-TGAACACATTTTATGGGA-ATGT-GAAGTA--GTACATACAAG-ACTTATTAAATGATTTT----GAT
gi|11 : CGGTGT-GGA-ATGGGGACG-GA-CT--------TT-----CCGTG------------------TTATTTT-----------------ACGCGTTTCCAGACTA------AGC-GTGCTCAGCAACGGAC-TTTTCGTG---G-TTTAAAAATC-TGACCAGAGAAACAATTTA-GACTCTAGAGA--A------AGA-A----AGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACAG--AATAT---C---G-T---ATATC--CCA--T-GA--GA------------TAGTATT--TATAACTAAATTTAC-C-AAATATTCGCCCACATTCTTCAAAAAAA--CCTAC-ACAAACTTGAAAAA-AGATCG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACAATGATTATTCTTATT----CATTGT-CTG-TAATTTCGTTGTTACAAAATGTAATCTATCGCTTACTTACTAGTAAGTAATCGACTCAAAGATCAAATCATtttgatttgatgatttcaatatatgtctgaaatgtgtacagtgtagcatgttataattgatatgccatgtggacaatgaaacatcaatgcacacggtgtatttataattgtgtcat
gi|6 : CGGTGG-GGA-ATGGAGACG-GA-CT--------TC-----CTGTG------------------TTATTTT-----------------CCGCGTTACCAGAATA------AGC-GTACTCAGCAACGGAC-TT---------------GAATTT-TGACTGGAGTAATAAAATG-GACTCGGGAGA--A------AGA-C----AGAAGT-CTTT-----AGTC---TTT-TG--AAAATATTAT-CAAGA--CTTAG---A---A-TA--ATATC--CCA--T-GG--GA------------TAGAATTTATA--ACTACATTTAT-C-AAAT-TTGAACCACATTCTTCAAAAA---TTCTTACACAAACTTGACACAAAGATCG---AAT-TCGGT-AAATGCCG----TCATGT-TT-TTCTAGAAATTTATCGATTCTCCTTATTC----ACTTA-CTG-TATTTTCATGGTTACAAAATGTAATCTATAACTTTCTT-------AGCAATCGACTGAAAGATCAAATCATATATGCC--------------------TTGTTGTTGATTTTTTTAT------GGAAAAT--GTT----GATATCTCATAAACCTTTT-GACAACGTA-CTGTTTGTGT----CCTCAG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGA-CTGATTGAGTCATTTCTGCATCGAAA-T---TATTTTGTTGATTTGTATTATGTATTAATGAAGAGAA-----AGAAAACTCTGTAACTGAAC---AGACCAAAGAGAAG-AAA--AAGTCA-TATCAT-GAAAGTACTTTATt
gi|15 : ttcaCGGTGTTGGACATGGGGATG-GATCT--------AT-----TCCTG--------------------TTTTT-----------------GCGCGTTTTCAGACTA------AGCAGTGCTCAGCAACGGACATTTTCG-GAAGG-TTTAAAAATCCGGACCAAGAACACATTTTGTGACCC-ACAGA--AGAAAAAAGATA----AGAAGTACGTAGCCTAAGTCCTATTTTTC--AAATCATTTT-GACGGGAAATAC---CAATG-TA--ATATC--CCACAT-GAAAGA------------TAGTAACT-TATAACTAAATGTAC---AAAT-TTAGCCCACATTCCCTTATAAAAACCCTAC-ACAAACTTGGAAAAagcaatatttgtgtgtttacatacatgtaatatacttatttaaaagccttcataatgatgataaatattatatgaaaggcgtagtacgtaattgtatgggcgatttcaatttcatctgaaatttgtaacagttg
gi|17 : aCGGTAC-GGA-ATGGGGACG-GA-CT--------TT-----TTGTGT-----------------TATTTTT------------------CACGTTTCCAGACTA------AGC-GTGCTCAGCAACGGAC-T---------------AAAAAT----------AACAAA--ATG-AACGCGGGGGA--A------AGA-A----ATAAGT-CGTT-----AGTC---TTTTTC--AAACAATTTT-CACTG--AATAG---C---G-TA--ATATC--CCA--T-GG--GA------------TATTA--TATATGACAACATTAAT-C-AAAT-TTAGCCCACATTCTTC--ACAAAATCAC---GCAAACTT-GAAAATAatga
gi|12 : GTGT-GGA-ATGGGGATGTGA-CTACTAGTAACTAGTATCCGTGGGTATTTTTTTTTTCTTTCTTTTTT-----------------GCGCGTTTC-AGACTACATGTAAGT-GTGCTCAGCAACGGAC-TTTTCG-G---GGTTTAAAAATC-GGACCAGAGACACATTATG-GACCCTACAGAGAA------AGA-A----AGAAGT-CGTA-----AGTC---TTT-TCA-AAATCATTTT-CAAGG--AACAT---C---GTTA--ATA-A--CCA--T-GA--GA------------TAGTATT--TATAAC-AAATGTAC-CAAAAT-TTGGTCCAAATTCTTC--AAAAAACCCTAC-ACAAACTTGGAAAAT-GATCG---AAT-TGGTC-AAATGCCGTCGATCACAT-TT-TTCTAAAAATACATCGATTATTCTTATTC--ACTCTGCTCTG-TA
gi|7 : c-GGA-ATGGGGACG-GA-CT--------AT-----CCGTGG-----------------TTTTTTTTGTTGGATTTTTTTTTTGCGCGTTTCCAGACTA------ATC-GTGCTCAGCAACGGAC-TTTTCG-G---GATTTAAAAATC-GGACCAGAGACACATTATG-GACCCTACAGA--A------AGA-A----AGAAGT-CGTA-----AGTC---TTTTTCAAAAATCATTTTCCACGG---ATATAAAC---G-TAGTATATC--CCA--TGGA--GATAGACTAAATACTAGTATTTATACA--TAAATGTACGA-AAAT-TTGGCGCACATTCTTC-AAAAAAGCCCTTA-ACAAACTT-GAAGATGA----TGCGAA-TTGTCAAAATGCCG----TCACGT-TT-TTGTAGAAATGCATCGATTATTCTTATT----CACTGA-CTG-TATTTTCTTTGTTAAAAGATATAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCC--------------------TTGTT-----TTTTTT-----------AAAAT--GTT----GATCTATCGTAAACC-CTT-GG-AACGAA--TTTTTGTGT----GCTCTG---------TCATTGGTT-AA---------TTG-----GCATCGGA--TA-TTGTGT--TT-----AA---AA-TATG--TTTTGT--A-TTGCGTT---T--GACTC----------------T---TTGTGGTTGAAC---AG--CAACGAGAAG-AAAAGAG-TGACCATTACGGATAGT-TATTATTTAGGGCACGA-TAATCGTACTA-ATACC--ACTGAC-ATATTA-TGT---at
gi|18 : A-CT--------TT-----CCGTG------------------TTACTTT-----------------GCGCGTTTCCAGACTA------AGC-GTGCTCAGCAACGGAC-TTTTCGTG---G-TATAGAATTC-TGAC----------TTA----ACTCGGGAGA--A------TGG-A----AGAAGT-CGTT-----ATTC---TTTTTC--AAAACATTTT-CATGG--AATAG---C---G-TA--ATATT--CGA--T-GG--GG------------TAGTATTat
gi|14 : ataatccttcttctttgatagggtggacaggtttt--AAAAC---C---G-TAC-AGGTCATCCA--T-GG--GA-------------AGTAC--ATATGGTTACATTTAT-C-AAAA-TTGGCC-ACAT---------------CT----CAAACTTGAAAAA-AGATCG---AATGTCGTC-AA-TGCCG----TCATATGTT-TTCTAGAAATACAT--ATC-TTCCTATT--GGCACT-A-CTGGTATTTTCGTGGT-AACAAATGCA-----TCGATAACTT-------AGTAG----------GATCA-ATCATACAT-CC--------------------TTGCC-----TTTCTT--TGGGGGGGGGGGGTGGGGG----GATTCTTCGTAAACT-CGTAAACAACGGACTTTTTTATGT----CCTCAG---------TACTTGGTTCCAAT--TT---Taa
gi|9 : ttaaacatattccgtaT-TTATTCTAGTAATACATCGATT---CTTATTC----ACCAA-CTG-TATTTTCGTTGTTACAAAATGTAAACTATAACTTACTT-------AGCAATCGACTGAAACATCAAATCATACATGTC--------------------------------TTTA--G------GGGGGGG--GGT----GACTTCTCCTAAACC-TTT-GAAAACGGACTTTT---TGT----GCCCT
gi|13 : CTG---------TAATTGGTTCAAAT--TT---TTG-----GCACCGGA-CTTATTGTG---TT-----AT---AATTATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATGGGTGTTGAACTGTTGGCCAAAGAGAAGAAAA--AA-TG-CCATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTATATACCC-ACTGACAATATTTATGT---TTTA---GC---------CATACTTATTTG----------AAGCCTTAATAATAGTGCAGT------------GATAAATA--CATGCATTACATGT--GAATATATAATATA--TA--A--GC-----------ACGGATGATTTCAATATGTGTCTG-AAAAATGTACA--GTGTAGCATGTTATCCTTGGATATG-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattggttccaacgattaggttatatctgcaccggaattatcttggtcattggtatcataatgaagagaattgaaagaaaactctggctgaagggccaaagagaagaaaaattccgatcataatagtacattaggtaagacacatggtaatatttgtttgttcacaaatacttattagggtctttataatgatgataaatattatatgaaatgtgtggtacgtaattatatgggtgatataaatcctgtaaagatgtatgtgtctgaaatttgtaacagttga
gi|9 : AATTGGTTCCAACGATTAGGTTATATCTGCACCGGAATTATCT-TGG--TC-----AT--------TG------GT--A-T--CAT--------AATGAAGAGAATTGAAAGAAAAC--TCTGGCTGAAG----GGCCAAAGAGAAG-AAA--AA-TTCCGATCAT-AATAGTACATTA------------------GG--TA-AGACACA--TGGTAATATT--TGT---T--------TGTTCACA-AATACTTA-TTAGGGTCTTTATAA---------------TGAT------------GATAAAT--------ATTATATGA--A----------ATG--TG--T--GGTACGTAATTATATGGGTGATATAAAT-----CCTGTAAAGATGT--AT-GTGT
gi|6 : tttattctagtaatacatcgattcttattcaccaactgtattttcgttgttacaaaatgtaaactataacttacttagcaatcgactgaaacatcaaatcatacatgtctttaggggggggggtgacttctcctaaacctttgaaaacggactttttgtgccctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAATATT--TGTGTGTTTACATACATGTAA---TATACTTA-TTT----------AA---------------AAGCCTTCATAATGATGATAAATAT---TATATGAAAGGCGTA----------GTACGTA--ATTGT-----------ATGGGCGATTTCAAT-TTCATCTG-AAATTTGT--A--ctgaaatttgtaacagttga
gi|2 : ttcacggtggggaatggagacggacttcctgtgttattttccgcgttaccagaataagcgtactcagcaacggacttgaattttgactggagtaataaaatggactcgggagaaagacagaagtctttagtcttttgaaaatattatcaagacttagaataatatcccatgggatagaatttataactacatttatcaaatttgaaccacattcttcaaaaattcttacacaaacttgacacaaagatcgaattcggtaaatgccgtcatgtttttctagaaatttatcgattctccttattcacttactgtattttcatggttacaaaatgtaatctataactttcttagcaatcgactgaaagatcaaatcatatatgccttgttgttgatttttttatggaaaatgttgatatctcataaaccttttgacaacgtactgtttgtgtcctcagtaattggttccaatttttggcaccggactgattgagtcatttctgcatcgaaattattttgttgatttgtattatgtattaatgaagagaaagaaaactctgtaactgaacagaccaaagagaagaaaaagtcatatcatgaaagtactttatagTACATGC--A----------ATA--TATAA--GC-----------ATGGATGATTTTAATATGTGTCTG-AAATATGT--ACAGTGTAGCATGTTATCCTT-GATATG-C-GTGTG--GACAATGAAACATCAATACACAC-TGTGT-ATTTATAATTAT---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTTAC----ATTA-AGGATACAGTCTTTTG-TACTTTTT-GTAAAAAGG-AAACTGAAA----------GCATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GATAGTTATTG--TTTTAACATG-AT-AC-CGGTA-CATA--ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGAacagttg
gi|1 : T-GATATGTCCAGGTGATGACAATGAAACATCAATACACACTTGTGTAATTTAT-ATTATATAATTTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAAATATAGA---CT-ATCTTTGTTACTTTTTGGTAAAAAGGAAAACTGAAACCAATTGAACACATTTTA-GGGACATGTGGAAGTAAGG----TACAAGTACTTATTAAATGACTTTTTGGGATAGTTATTGATTTTTAACATGAATAAC-CGGTAGCA-ATAATCATGTTTACAAATATACTTAAACGCGATTTGTATCCTTGGATCATGTG-AAGAacggaaagtacatgtatatatactttggcgtgtactgtcttctagtgaatacttgttttacattaataaacaaattgctattaaacaaccaaaaaagaatcctttggtgaaggtctgggaaggttggacaaatttatttatgtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatatgtattgcaaaatcaaaacataataaaaagaaatacactgcatatattttgtaacatgctatagactagtgcatgtacaatattaactgaactgtacttacagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaatcatccgagatcataatattcggaaagaatcataatgtaaatacaattaattacagttgcggccggaaaagtttcaacgtcagcttctgggaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatttcgtccctccaacaaaattttttggatccgcccctgcctagtgtgtctgatgaaggtagatttgaaaatgtatttaacagtcacgtgcatcttattgttcgaatgtttcagataaaccatgggttgggtgggtacatcacacacaagttgcggattggtgtacagtcaaagcaagggaccattgaaaacagttggagcaaaagggtgttcgagctatcgaagttaaagtacgtttcaatctgagaagggacaataaaaatggtttccgacattcatagtgttggagtcattgcaatt
gi|3 : --TTATAACATG-CT-ACACTGTA-CACATT-TCA-G---AC--ATATA-TTGAAttattgccttatggccgtgtaagaatcttttagtgaatacttgttttaatattaataaacaaattgctattaaaaaacccataaaaaaggatcactttcgtgaaggcctggggaaggttgacgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatgtgtattgataaatcaagaaacataataaaaagtaaatacactgaatatccattttgtaacaggctatagctgactagttttactgaacttttgccacagtagagtcttaataatattctaatgtggggacttcccaaagatgatcatatctgttcgttaatctcaaatgcatacatcgttatacacatttaaaatcatcctgagaccataatattttccggaaagaaacctaaaatcaaaaaaaataaatgtataataaattaattcacagttggcggcttggaaaagattcaacgtcagcttgggggccgtgttcccaaccagggccctggccctggatacccactggggcttttttaaagggcggttctcagacccattcgccgtaattttctcccccaacacaatttttggatccgcctcctgcctatagttttctgattgaaggttagagattcgggaaaagtatttataacacgcgttaattaaagaccatgggtctgggggggggggggggggaggggttacatctcacacaaaagtttgtggatatggtgtacagacaaagcacagggacacgttgaaaacaagttcgagcaaaaggtgtgttcgagcataatcgaagtaaggttcgttcccaatctgagaagagacaataaatatgggtttgcgacattcatagtgttggagtcatttgaattcgagcaaatgagccttcgacgattccatatcattgaatttctgacatatattcaaactgaaaatacaatgtatttcagagtaactgtttcaagaaggcgttgaataacggactaagggtgactcttattctactgtcgtataatagtcctggcaatatagtcggtcttctggagaatcagaaaattcgtgtgagatggggctccatatatagtctacgtataatagagtgtatatcgaaactatcacatacatttcattgacattttgtgtaattaaaatagactcttagtatgtgctatcggaagcttgacaatcgtgacgcacaaattaatttcaacgaaagagggtaacttgtacaatatactagctgcagatctgtagcgttatggtttttatagcatggtcagaaaaaataaaaaacccataacactgcagttctgcagcaacaataccactaggagtgcacagggacgtgaaaaactcaatcaaaaaaaaaaaaaaaaaaaaaaccaccaaacaccacaaaccccccccaaacaaacccacctcgcaacgattatcctacaacagctcgactcgaaaactacccaaaatttatcaattgtgtatcagaacccttatattcatacttatatgtaccgaaaatataataactattcacaatgaaattacgacgcgttctaaatgtggtgaacctccataatgtcagcttcaaattatgaaatactgaaatcaccggaaatatacatgatcagctggtgtgtaatccttatactcataatatattcgcgtccaatgtctcatcctagcgattggcgattgttttt
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): ATACTCTTGACGTGATACAGTCTTCTAGTGAATACTTGTTTAATTAATAAACAATTGCTATTAAAAAAAAAAACAATAAAGGAATCTTTTGTGAGGCCTGGAAGGTTGGACAAATTATTGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTGTGTGTGTTTGCCAAAATCAAAACAAATAAAAAGAAAACACTGAATATTCTTTTTGTAACATGCTATAGACTAGTGTACAAATATAACTGAATTTTGCCACAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATCATCCTGAAATCATAATATTCGAAGAATCATGATTGGTAAATAACAATTAATCAATAGTTGCGAACCGGAAAAGCTTCAAACGTCAGCTTCCTGAGAGGCCGTTAATCACATTAAGCGGTTTTCCAGGATCCTTCGCCGAATTTTATCGTCCCCCCTCCCACATCACACACCACATTTTTTGGGATACGCACCCCTGCCTAGTGTGTCCTGATGAGGTAGATTCGGAAAAGTATTTAACACGCAGTTAATTTTTCAATTTCAGTAAACCATGGGTTGGGGGGGGGGGGGGGTTACCAATCACACACAAGTTGTGGATGGTACAATCAAAGCAAGGGACCATTGAAACAGTTGGAGCAAAAGGGTGTTCGAGCTATCGAATTAAAAAGTACGTTCCAATCTGAGAAGGGACAACAAAATGGTATGCGAGAGACATTCATAGTGTTACGAAGTCATTGCAATTCGAGCCAATGAGCCTTCGTAATCCCATTGATTTCTGCATAATTTCAGAAACTGAAAATACATGTATTTCAGAGTAAAACGTCGAAAAACTAGGGGACTTTATTAAGTGTGTAATTTCGGCAAGTCGGTTTTTTGAAATTCAGAAAATCGGAAGAGGACTCAAGGCAATTGATATATAAAAA
Unaligned ( gi|8 ): ACAGTTTTCATGACATTTTGTGATTTAAAATATTTGAGTTAGCTGCTCGAGTTGAACAAGCGGACGTCACGCGACAATTAATTCAACAAAAGAGGGGATAAACTTTGTACAAAGTTATACTAGCTGCGATCTGTAGCGTTCATAACATGGTCAGACCAAAAAATATAAACCATAACGCTGCAGCTAACAATATACTGAGAGTGCACCAGGAGACGTGAAAAACTCTACCCTAAAAAAACCAAAAACAAAAACACAAAACACCCCCCCCCAACAAAAAAAAACCCCCACCACAAAACGAACCATAAAAAAACCACCAATTACTGTATACCCTAAATTATCTGCTGGGTACCAAAATGCATCCAAAAAAGTTACGGAGCTTTTATAAAAGTGAACTAAAATTCAACAGAAAATATAATGTAATGTTAACAACGAACTCCACCGGAAAGAACATGGACAAAGGGTTAATCCTTAATATCAATATAATATATTACGTTTATATATCATACCATAGGCGTTGGACTGTTTTTT
Unaligned ( gi|10 ): CCCTGCCTTATGTGTCTGGTGAAGGTAGATTTGGAAAAGTATTTAACACGCAGTTAATTTTCAATTTCAGATAAATCATGGTTGGGGGGGGGGTGTTACATCACATACAAGATGTGAATTGGTGTACAGTCAAACCAATGGACCATTGGAAACAGTTCGTGCTAGAGAGTACTCGAACTATCGAGGTTATAGTATGTTCCAATCGGAGAAGGAACAACAAAAATGGTTTGCGACATTCATGGTGTTCGAGCCATTGCACTTTCAAGCCAATGCATGAGCCATCGAAATCCCATTGTATTTCTGACATATATTCACATTGAAAATATTTTTTTAAATAGTCAAAAGTTAAACCTCGAAAACTAGGCGACCTTATTTTGTGTATTTCGGCAAAGTCGGTTTTGATATTCAGAAAATTCGGAGAGGGCTCAAGGCAATTGATATATA
Unaligned ( gi|16 ): CTTTTATAACATGCTATGGACTAGTGTACAATATTAACAGTGCACAATATTAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATATCCCCCTGGGATTATATTTCAAAAGAATCATAGTGTAAATACAATTAATCACATTTGGAAAATGCTTAATATAAGTTCCGTCCGGAAATGCTTCAATGTCAGCTTCTGGGAGG
Unaligned ( gi|19 ): TTTCATGATATTTTGTGAATTAAAAAATCTTGAGTAGCTGCTCGAAGTTGACAACGGACGCACAAATTAATTCAACGAAAAGAGGGGGTAACTTGTACAATATACTACTGCAGAGCTGTAGTGTTATGGTATTATAGCATGGTCAGACAAAAATATAAAAC
Unaligned ( gi|20 ): AAAATGAATCAAAAAAGTTACGAAGCTTTTAATAAGTGAACTAAAATCAGCAGAAATTATGTAAAGTTAACACGAAATCACCGGAAAACATGGACAAAGGTTAATACTTAATATTCAAT
Unaligned ( gi|21 ): AAGTTTCATGAAATATTGTGAATTAAAAATTATTGAGTAGCTGTTCGAAGTTGACAACGGATGCACAAATGAATTCAACGAAAAGAG
Unaligned ( gi|22 ): TGCCTACTGTGTCTGCTCAGAGGGCAAAATTGGAGAAATGTGTAACAAAAGTCAGTACATCTTAGTGATTGAATGTTT
Unaligned ( gi|23 ): TGCAAAGTTAGTACTAATATTGGATTGGCATATATACATAACA
Unaligned ( gi|24 ): AACAACAAGGAATCCTTTGATGAGGCCTGGTTAAGGTTGG
Unaligned ( gi|25 ): TAGCATGCCGGCCCTGATTTGCCAAGCTACGTTAGCA
Unaligned ( gi|26 ): ACATCACACACAAGTTGTGGATTGGTGCACA
Alignments
lowQualScore : 22222222222222 555555555555555555555555555555555555 111111 111 222222 11111 222222222222 111 11 111 1111 33333 1111111 55555555555555555555555555555555555555555 1111 11 11111 222222222 111 111111 111 3333333333333 111111 11111 1111 11 44444444444444 333333333333 22222 33333333333 666666666 1111 22 11 22222222 333333 111 1 1 1 3333 1 1 2222222 1 2222 2222 1 11 11 111 222222 1 444444 1 11 2
lowQualScore : 5 5 5 4 77777777777777 555555555555555555555555555555555555 0 222222 4 4 555 3 4 0 6 1 4 333333 4 4 11111 777 55 4 4 55 4 4 1 777 4 99 55 55 99 000000000000 66 3 1 1 1 77 4 4 4 555 2 55 5 000 5 3 5 2222 5 5 6 33333 1 5 5 8888888 0 55555555555555555555555555555555555555555 99 4444 1 6 6 2 22 55555 666666666 88 888 000 777777 2 1 222 1111111111111 3 7 99 6 666666 6 66666 7 3333 1 6 99 7 6 6 3 8 0 1 99 55 5 6 0 88888888888888 8 333333333333 00000 0 88888888888 22 444444444 99 1 0000 5 33 77 11 6 6 2 11 3 8 8 0 77777777 1 999999 1 777 0 0 0 2 0000 2 3 0 0 5555555 0 1111 1111 0 33 22 444 888888 0 222222 0 33 1 3 7
lowQualScore : . . . . .............. .................................... . ...... . . ... . . . . . . ...... . . ..... ... .. . . .. . . . ... . .. .. .. .. ............ .. . . . . .. . . . ... . .. . ... . . . .... . . . ..... . . . ....... . ......................................... .. .... . . . . .. ..... ......... .. ... ... ...... . . ... ............. . . .. . ...... . ..... . .... . . .. . . . . . . . .. .. . . . .............. . ............ ..... . ........... .. ......... .. . .... . .. .. .. . . . .. . . . . ........ . ...... . ... . . . . .... . . . . ....... . .... .... . .. .. ... ...... . ...... . .. . . .
lowQualScore : 0 0 0 4 22222222222222 444444444444444444444444444444444444 1 888888 4 4 999 3 4 1 7 0 4 666666 4 4 11111 888 55 0 0 55 0 0 0 000 0 55 55 55 55 555555555555 33 6 0 7 7 11 4 4 4 444 9 99 7 000 7 0 7 1111 0 0 2 11111 4 0 0 6666666 7 77777777777777777777777777777777777777777 22 2222 0 7 7 5 33 22222 777777777 66 000 000 777777 5 0 333 7777777777777 2 3 22 7 555555 7 77777 8 8888 0 7 22 5 7 7 2 0 8 0 00 44 7 7 8 00000000000000 0 444444444444 00000 8 22222222222 77 222222222 22 0 9999 7 33 99 44 7 7 8 00 8 0 0 8 44444444 0 000000 0 555 0 0 0 5 8888 0 2 0 0 0000000 0 2222 2222 0 88 55 888 888888 0 555555 0 88 0 7 3
consensus : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGTG------------------TTAT--------------TTTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTCG---GGTTTAAAAATCNG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAA-CCCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GGCAACGGACTTTTTTGTGT----NCTCTG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTTATTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---NGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATACCCAACTGACAATATTTATGT-TTTA---AC-T-TAACA-TATACTTA-TT--GAAG-CCTTAATAAT-----AGCGATAAATA--C--------ATGTATTACATGNAA---------ATATAA--GCATGGATGATTTCAATATGTGTCTG-AAANATGT--A--GTGTAGCATGTTATCCTT-GATATG-CCATGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATGT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAATTAAGGATACAGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA-T-ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGA
Reference ( family-1625 ) : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGTG------------------TTNT--------------TTTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTCGT--GGTTTAAAAATCTG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAA-CCCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GACAACGGACTTTTTTGTGT----NCTCTG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTNATTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---AGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATACCCAACTGACAATATTTATGT-TTTA---AC---TAACA-TATACTTA-TT--GGGG-CCTT-ATAAT-----AGCGATAAATA--C--------ATGTATTACATGNAA---------ATATAA--GCATGGATGATTTCAATATGCGTCTG-AAANATGT--A--GTGTAGCATGTTATCCTT-GATATG-CCGTGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATAT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGNATTTACATTAANTAAGGATACNGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACGCATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-CA-T-ATCATG-TTAC--ATATACTTAAACGNGATTTGTATCCTTGGATCATGTGTAAGA
gi|1 : T-GATATGTCCAGGTGATGACAATGAAACATCAATACACACTTGTGTAATTTATA-TTATATAATTTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAA------ATATAGACTATCTTTGTTACTTTTTGGTAAAAAGGAAAACTGAAACC-AATTGAACACATTTTA-GGGACATGTGGAAGTAAGG----TACAAGTACTTATTAAATGACTTTTTGGGAT----AGTT-ATTGATTTTTAACATGAATAA-CCG------GTAGCA--A-TAATCATGTTTACAAATATACTTAAACGCGATTTGTATCCTTGGATCATGTG-AAGA
gi|11 : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGTG------------------TTAT--------------TTTACGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTCGT--GGTTTAAAAATCTG-ACCAGAGAAACAATTTA-GACTCT-----AGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACA-G--A-AT-ATC---G-T---ATATC--CCA--TGA--GA------------TAGTATT--TATAACTAAATTTAC-C-AAATATTCGCCCACATT-CTTCAAAAAAA--CCTACACAAACTTGAAAAA-AGAT-CG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACAATGATTATTCTTATT----CATTGT-CTG-TAATTTCGTTGTTACAAAATGTAATCTATCGCTTACTTACTAGTAAGTAATCGACTCAAAGATCAAATCATttattgccttatggccgtgtaagaatcttttagtgaatacttgttttaatattaataaacaaattgctattaaaaaacccataaaaaaggatcactttcgtgaaggcctggggaaggttgacgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatgtgtattgataaatcaagaaacataataaaaagtaaatacactgaatatccattttgtaacaggctatagctgactagttttactgaacttttgccacagtagagtcttaataatattctaatgtggggacttcccaaagatgatcatatctgttcgttaatctcaaatgcatacatcgttatacacatttaaaatcatcctgagaccataatattttccggaaagaaacctaaaatcaaaaaaaataaatgtataataaattaattcacagttggcggcttggaaaagattcaacgtcagcttgggggccgtgttcccaaccagggccctggccctggatacccactggggcttttttaaagggcggttctcagacccattcgccgtaattttctcccccaacacaatttttggatccgcctcctgcctatagttttctgattgaaggttagagattcgggaaaagtatttataacacgcgttaattaaagaccatgggtctgggggggggggggggggaggggttacatctcacacaaaagtttgtggatatggtgtacagacaaagcacagggacacgttgaaaacaagttcgagcaaaaggtgtgttcgagcataatcgaagtaaggttcgttcccaatctgagaagagacaataaatatgggtttgcgacattcatagtgttggagtcatttgaattcgagcaaatgagccttcgacgattccatatcattgaatttctgacatatattcaaactgaaaatacaatgtatttcagagtaactgtttcaagaaggcgttgaataacggactaagggtgactcttattctactgtcgtataatagtcctggcaatatagtcggtcttctggagaatcagaaaattcgtgtgagatggggctccatatatagtctacgtataatagagtgtatatcgaaactatcacatacatttcattgacattttgtgtaattaaaatagactcttagtatgtgctatcggaagcttgacaatcgtgacgcacaaattaatttcaacgaaagagggtaacttgtacaatatactagctgcagatctgtagcgttatggtttttatagcatggtcagaaaaaataaaaaacccataacactgcagttctgcagcaacaataccactaggagtgcacagggacgtgaaaaactcaatcaaaaaaaaaaaaaaaaaaaaaaccaccaaacaccacaaaccccccccaaacaaacccacctcgcaacgattatcctacaacagctcgactcgaaaactacccaaaatttatcaattgtgtatcagaacccttatattcatacttatatgtaccgaaaatataataactattcacaatgaaattacgacgcgttctaaatgtggtgaacctccataatgtcagcttcaaattatgaaatactgaaatcaccggaaatatacatgatcagctggtgtgtaatccttatactcataatatattcgcgtccaatgtctcatcctagcgattggcgattgttttt
gi|12 : GTGT-GGA-ATGGGGATGTGA-CTACTAGTAACTAGTATCCGTGGGTA--------------TTTTTTTTTTCTTTCTTTTTTGCGCGTTT-CAGACTACATGTAAGT-GTGCTCAGCAACGGAC-TTTTCGG--GGTTTAAAAATCGG-ACCAGAGACACATTATG-GACCCTAC---AGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTCA--AAATCATTTT-CAAG-G--A-AC-ATC---GTTA--ATA-A--CCA--TGA--GA------------TAGTATT--TATAAC-AAATGTAC-CAAAAT-TTGGTCCAAATT-CTTC-AAAAAA-CCCTACACAAACTTGGAAAAT-GAT-CG---AAT-TGGTC-AAATGCCGTCGATCACAT-TT-TTCTAAAAATACATCGATTATTCTTATTCA--CTCTGCTCTG-TAt
gi|13 : cCTG---------TAATTGGTTCAAAT--TT---TTG-----GCACCGGACTTATTGTG---TT-----AT---AATTATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATGGGTGTTGAACTGTTGGCCAAAGAGAAGAAAA--AATG-C-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTATATACCC-ACTGACAATATTTATGT-TTTA---GC---------CATACTTATTT--GAAG-CCTTAATAATAGTGCAGTGATAAATA--C--------ATGCATTACATGTGAATATATAATATATAA--GCACGGATGATTTCAATATGTGTCTG-AAAAATGTACA--GTGTAGCATGTTATCCTTGGATATG-at
gi|14 : TT--AAA-CATATT-C-CGTA--A-AA-ACC---G-TAC-AGGTCATCCA--TGG--GA-------------AGTAC--ATATGGTTACATTTAT-C-AAAA-TTGGCC-ACAT----------------CT---CAAACTTGAAAAA-AGAT-CG---AATGTCGTC-AA-TGCCG----TCATATGTT-TTCTAGAAATACAT--ATC-TTCCTATTGG--CACT-A-CTGGTATTTTCGTGGTAACAAA-TGCA-----TCGATAACTT-------AGTAG----------GATCAA-TCATACAT-CCTTG---------CC-----TTTCT-T--TGGGGGGG--------GGGGGTGGGGG----GATTCTTCGTAAACT-CGTAAACAACGGACTTTTTTATGT----CCTCAG---------TACTTGGTTCCAAT--TT---T
gi|15 : CGGTGTTGGACATGGGGATG-GATCTA-T-----------TCC-TG------------------TT----------------TTTGCGCGTTTTCAGAC------TAAGCAGTGCTCAGCAACGGACATTTTCGGAAGGTTTAAAAATCCGGACCAAGAACACATTTTGTGACCCACAGAAGAAAAAAGATAAGAAGTACGTAGCCTAAGTCCTATTTTTC--AAATCATTTT-GACG-GGAA-AT-ACCAATG-TA--ATATC--CCACATGAAAGA------------TAGTAACT-TATAACTAAATGTA--C-AAAT-TTAGCCCACATTCCCTTATAAAAA-CCCTACACAAACTTGGAAAA
gi|17 : aCGGTAC-GGA-ATGGGGACG-GA-CT--T-----------TTTGTG------------------TTAT--------------TTTTCACGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-T-------------AAAAAT-----------A-ACAAAATG-AACGCG-----GGGGAAAGA-AATAAGT-CGTT-----AGTC---TTTTTC--AAACAATTTT-CACT-G--A-AT-AGC---G-TA--ATATC--CCA--TGG--GA------------TATTA--TATATGACAACATTAAT-C-AAAT-TTAGCCCACATT-CTTCACAAAAT-C---ACGCAAACTT-GAAAATAatga
gi|18 : A-CT--T-----------TCCGTG------------------TTAC--------------TTTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTCGT--GGTATAGAATTCTG-AC----------TTA----ACTCG-----GGAGAATGG-AAGAAGT-CGTT-----ATTC---TTTTTC--AAAACATTTT-CATG-G--A-AT-AGC---G-TA--ATATT--CGA--TGG--GG------------TAGTATT
gi|2 : ataatccttcttctttgatagggtggacaggttttTACATGCAAT--------ATATAA--GCATGGATGATTTTAATATGTGTCTG-AAATATGT--ACAGTGTAGCATGTTATCCTT-GATATG-C-GTGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTTACATTAA----GGATACAGTCT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAA-----------GCATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA---ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGAaa
gi|3 : CGGTGT-GGA-ATGGCGATG-GA-CT--T-----------TCTGTG------------------TTAT--------------TTTACGCG-------------------C-GTGCTCAGCAACGGAC-TTTTCGT--GGTTTAAAAATCTG-ACCAGAGAAACAATATG-GACTCTT----AAAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ATC---G-TA--ATATC--CCT--TGA--GA------------TGGTATTTATA--ACC---TTTAT-C-AAAT-TTGGTAAACATT-CTTCAAAAAA--TCCTACACAAACTTAAAAAA-AGAT-CG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACATCGATTATTCTTACTC----ATTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAATATCAAATCATACATGCCTTGGTTTTTTTGTT-----TTTTTGT--T------GTTTTTTTTTAAAAT--GTTGACAGATTTATCGTAAACC-CTT-GGCAACGGACTTTTTTG-GTTAAAATTTTGGCACCAGACTGATTGGGT--AAT--TT---CT------GCACCGGACTTATTGTGT--TT-----------A-TATGTATTATGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---AGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATA----TTA-GGTACGACTATTCGGACTT-ATACCCAACTGACAATATTTATGT-TTTA---AA---TAACATTATACTTA-TT--GAAG-CCTTAATAAT-----AGCGATAAATA--C--------ATGTATTACAAGAAAT--------ATATAA--ACATGGATGATTTCAATGTG------------TAC--A--GTGTAGCTTGTTCTCTCT-GATATG-CCATGTG--GACAAATAAACATCAAT--ACACT-GTGTA-TTTATAATTAT--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACT---TATG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-AT-TGAACACATTTTATGGGA-ATGT-GAAGTA--GTACATACAAG-ACTTATTAAATGATTTT----GATTTTGATTTGATGA--TTTCAATAT--AT-GTCTGAAATGTGTA-CAGTG-T-AGCATG-TTAT--Aacggaaagtacatgtatatatactttggcgtgtactgtcttctagtgaatacttgttttacattaataaacaaattgctattaaacaaccaaaaaagaatcctttggtgaaggtctgggaaggttggacaaatttatttatgtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatatgtattgcaaaatcaaaacataataaaaagaaatacactgcatatattttgtaacatgctatagactagtgcatgtacaatattaactgaactgtacttacagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaatcatccgagatcataatattcggaaagaatcataatgtaaatacaattaattacagttgcggccggaaaagtttcaacgtcagcttctgggaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatttcgtccctccaacaaaattttttggatccgcccctgcctagtgtgtctgatgaaggtagatttgaaaatgtatttaacagtcacgtgcatcttattgttcgaatgtttcagataaaccatgggttgggtgggtacatcacacacaagttgcggattggtgtacagtcaaagcaagggaccattgaaaacagttggagcaaaagggtgttcgagctatcgaagttaaagtacgtttcaatctgagaagggacaataaaaatggtttccgacattcatagtgttggagtcattgcaatt
gi|3 : GATGATTTCAATATATGTCTG-AAATGTGT--ACAGTGTAGCATGTTATAATT-GATATG-CCATGTG--GACAATGAAACATCAATGCACACG-GTGTA-TTTATAATTGTGT---attgatatgccatgtggacaatgaaacatcaatgcacacggtgtatttataattgtgtcat
gi|4 : cggtgtggaatggcgatggactttctgtgttattttacgcgcgtgctcagcaacggacttttcgtggtttaaaaatctgaccagagaaacaatatggactcttaaagaaagaaagaagtcgtaagtctttttcaaatcattttcacggaatatcgtaatatcccttgagatggtatttataacctttatcaaatttggtaaacattcttcaaaaaatcctacacaaacttaaaaaaagatcgaatccgtcaaatgccgtcatgtttttctagaaatacatcgattattcttactcattgactgtattttcgttgttacaaaatgtaatctatcgcttacttagtaatcgactcaaatatcaaatcatacatgccttggtttttttgtttttttgttgtttttttttaaaatgttgacagatttatcgtaaacccttggcaacggacttttttggttaaaattttggcaccagactgattgggtaatttctgcaccggacttattgtgtttatatgtattatgtattgcatttagaatcaagagaaagaaaacattgtggttgaacaggccaaagagaagaaaaatgaccattacgatagtatattaggtacgactattcggacttatacccaactgacaatatttatgttttaaataacattatacttattgaagccttaataatagcgataaatacatgtattacaagaaatatataaacatggatgatttcaatgtgtacagtgtagcttgttctctctgatatgccatgtggacaaataaacatcaatacactgtgtatttataattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacttatgtactttttgtaaaaaggaaactgaaaccattgaacacattttatgggaatgtgaagtagtacatacaagacttattaaatgattttgattttgatttCGGTGT-GGA-ATGGGGACG-GA-CT--C-----------TCCGTGG-----------------TTTT--------------TTTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTCG---GGTTTAAAAATTGG-ACCAGAGACACATTATG-GACCCT-----ACAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTATC--AAATCATTTT-TACG-G--A-AT-ATC---G-TA--ATGTC--CCA--TGA--GA------------TAGTATTTATATAACTAAATGTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAAACCCTACA--AACTTGGAAAATAAAT-AGTACAAT-TTGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTCTGACACTGA-CTG-TATTTTCGTTGTTAAAAGATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTATCGTAAACC-CTT-GGCAACGGATTTTTTTGTGT----GCTCTG---------TAATTGGTTCAAAT--TT---TTG-----GCACCGGACTATTTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAATACATTGTGGTTGAAC---TGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-AGTACGACTAATCGGACTA-ATACCCAACTGACAATATT--TGT-TTTA---ACTTTTAACA-TATACTTA-TT--G-----------AAT-----AGCGATAAATACGC--------ATGCATTACATGC-A---------ATATAA--GGATGGATGATTTCAATATGTGTCTG-AAAAATGT--A--GTGTAGCATGTTATCCTT-GACATG-CCATGTG--GACAATGAAACACCAATACACACT-GTGTA-TTTATAATTATNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTTGCATTAATTAAGAATGCTGACC---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACCAA--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTACTAAATGACTTT----GAT----AGTT-ATTG--TTATAACATG-AT-A-CCG------GTA-CA-TATT-ATCATG-TTAC--ATATACTTGAACGAGA-TTGTATCCTTGGATCAAGTGTAAGAcat
gi|6 : CGGTGG-GGA-ATGGAGACG-GA-CT--T-----------CCTGTG------------------TTAT--------------TTTCCGCGTTACCAGAA------TAAGC-GTACTCAGCAACGGAC-TT-------------GAATTTTG-ACTGGAGTAATAAAATG-GACTCG-----GGAGAAAGA-CAGAAGT-CTTT-----AGTC---TTTTGA--AAAT-ATTAT-CAAG-A--C-TT-AGA---A-TA--ATATC--CCA--TGG--GA------------TAGAATTTATA--ACTACATTTAT-C-AAAT-TTGAACCACATT-CTTCAAAAAT--TCTTACACAAACTTGACACAAAGAT-CG---AAT-TCGGT-AAATGCCG----TCATGT-TT-TTCTAGAAATTTATCGATTCTCCTTATTC----ACTTA-CTG-TATTTTCATGGTTACAAAATGTAATCTATAACTTTCTT-------AGCAATCGACTGAAAGATCAAATCATATATGCCTTG---------TTGTTGATTTTT-TTAT------G--------GAAAAT--GTT----GATATCTCATAAACCTTTT-GACAACGTAC-TGTTTGTGT----CCTCAG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTGATTGAGTCATTTCTGCATCGAAA-T---TATTTTGTTGATTTGTATTATGTATTAATGAAGAGAA-----AGAAAACTCTGTAACTGAAC---AGACCAAAGAGAAG-AAA--AA-GTCATATCAT-GAAAGTACTTTAT
gi|6 : ttcaCAATATTTGTGTGTTTACATACATGTA--A-TATACTTA-TTTAAAAG-CCTTCATAAT-----GATGATAAA----------------TATTATATGAAAGGCGTAGT-ACGTAATTGTATGGGCGATTTCAAT-TTCATCTG-AAATTTGT--A--agcaatatttgtgtgtttacatacatgtaatatacttatttaaaagccttcataatgatgataaatattatatgaaaggcgtagtacgtaattgtatgggcgatttcaatttcatctgaaatttgtaacagttg
gi|7 : ttcacggtggggaatggagacggacttcctgtgttattttccgcgttaccagaataagcgtactcagcaacggacttgaattttgactggagtaataaaatggactcgggagaaagacagaagtctttagtcttttgaaaatattatcaagacttagaataatatcccatgggatagaatttataactacatttatcaaatttgaaccacattcttcaaaaattcttacacaaacttgacacaaagatcgaattcggtaaatgccgtcatgtttttctagaaatttatcgattctccttattcacttactgtattttcatggttacaaaatgtaatctataactttcttagcaatcgactgaaagatcaaatcatatatgccttgttgttgatttttttatggaaaatgttgatatctcataaaccttttgacaacgtactgtttgtgtcctcagtaattggttccaatttttggcaccggactgattgagtcatttctgcatcgaaattattttgttgatttgtattatgtattaatgaagagaaagaaaactctgtaactgaacagaccaaagagaagaaaaagtcatatcatgaaagtactttatag-GGA-ATGGGGACG-GA-CT--A-----------TCCGTGGTTTTTTTTGTTGGATTTTTTT--------------TTTGCGCGTTTCCAGAC------TAATC-GTGCTCAGCAACGGAC-TTTTCGG--GATTTAAAAATCGG-ACCAGAGACACATTATG-GACCCT-----ACAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTCAAAAATCATTTTCCACG-G--ATATAAAC---G-TAGTATATC--CCA--TGGA-GATAGACTAAATACTAGTATTTATACA--TAAATGTACGA-AAAT-TTGGCGCACATT-CTTCAAAAAAG-CCCTTAACAAACTT-GAAGAT-GATGCG---AAT-T-GTCAAAATGCCG----TCACGT-TT-TTGTAGAAATGCATCGATTATTCTTATT----CACTGA-CTG-TATTTTCTTTGTTAAAAGATATAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCCTTG---------TT-----TTTTT-T-------------------AAAAT--GTT----GATCTATCGTAAACC-CTT-GG-AACGAA--TTTTTGTGT----GCTCTG---------TCATTGGTT--AA--------TTG-----GCATCGGA--TATTGTGT--TT-----AA---AA-TATG--TTTTGT--A-TTGCGTT---T--GACT-------------------CTTTGTGGTTGAAC---AG--CAACGAGAAG-AAAAGAGTGAC-CATTACGGATAGT-TATTATTTAGGGCACGA-TAATCGTACTA-ATACC--ACTGAC-ATA-TTATGT-acagttg
gi|9 : T-TTATTCTAGTAATACATCGATT---CTTATTC----ACCAA-CTG-TATTTTCGTTGTTACAAAATGTAAACTATAACTTACTT-------AGCAATCGACTGAAACATCAAATCATACATGTC---------------------TTT-A--G------G--------GGGGGG--GGT----GACTTCTCCTAAACC-TTT-GAAAACGGAC-TTTTTGTGC----CCTat
gi|9 : AATTGGTTCCAACGATTAGGTTATATCTGCACCGGAATTATCTTGG--TC-----AT--------TG------GT--A-T--CAT--------AATGAAGAGAATTGAAAGAAAAC--TCTGGCTGAA----GGGCCAAAGAGAAG-AAA--AATTCC-GATCAT-AATAGTACATTA-----GGTAAGAC------------ACA------TGGTAATATTT--GT-TT-----GT---TCACA-AATACTTA-TT--AGGGTCTTT-ATAAT-----GATGATAAATA--TTATATGAAATGTGTGGTACGTAA---------TTAT------ATGGGTGATATAAAT-----CCTGTAAAGATGT--AT-GTGTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattggttccaacgattaggttatatctgcaccggaattatcttggtcattggtatcataatgaagagaattgaaagaaaactctggctgaagggccaaagagaagaaaaattccgatcataatagtacattaggtaagacacatggtaatatttgtttgttcacaaatacttattagggtctttataatgatgataaatattatatgaaatgtgtggtacgtaattatatgggtgatataaatcctgtaaagatgtatgtgtctgaaatttgtaacagttga
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACTCTTGACGTGATACAGTCTTCTAGTGAATACTTGTTTAATTAATAAACAATTGCTATTAAAAAAAAAAACAATAAAGGAATCTTTTGTGAGGCCTGGAAGGTTGGACAAATTATTGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTGTGTGTGTTTGCCAAAATCAAAACAAATAAAAAGAAAACACTGAATATTCTTTTTGTAACATGCTATAGACTAGTGTACAAATATAACTGAATTTTGCCACAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATCATCCTGAAATCATAATATTCGAAGAATCATGATTGGTAAATAACAATTAATCAATAGTTGCGAACCGGAAAAGCTTCAAACGTCAGCTTCCTGAGAGGCCGTTAATCACATTAAGCGGTTTTCCAGGATCCTTCGCCGAATTTTATCGTCCCCCCTCCCACATCACACACCACATTTTTTGGGATACGCACCCCTGCCTAGTGTGTCCTGATGAGGTAGATTCGGAAAAGTATTTAACACGCAGTTAATTTTTCAATTTCAGTAAACCATGGGTTGGGGGGGGGGGGGGGTTACCAATCACACACAAGTTGTGGATGGTACAATCAAAGCAAGGGACCATTGAAACAGTTGGAGCAAAAGGGTGTTCGAGCTATCGAATTAAAAAGTACGTTCCAATCTGAGAAGGGACAACAAAATGGTATGCGAGAGACATTCATAGTGTTACGAAGTCATTGCAATTCGAGCCAATGAGCCTTCGTAATCCCATTGATTTCTGCATAATTTCAGAAACTGAAAATACATGTATTTCAGAGTAAAACGTCGAAAAACTAGGGGACTTTATTAAGTGTGTAATTTCGGCAAGTCGGTTTTTTGAAATTCAGAAAATCGGAAGAGGACTCAAGGCAATTGATATATAAAAA
Unaligned ( gi|8 ): ACAGTTTTCATGACATTTTGTGATTTAAAATATTTGAGTTAGCTGCTCGAGTTGAACAAGCGGACGTCACGCGACAATTAATTCAACAAAAGAGGGGATAAACTTTGTACAAAGTTATACTAGCTGCGATCTGTAGCGTTCATAACATGGTCAGACCAAAAAATATAAACCATAACGCTGCAGCTAACAATATACTGAGAGTGCACCAGGAGACGTGAAAAACTCTACCCTAAAAAAACCAAAAACAAAAACACAAAACACCCCCCCCCAACAAAAAAAAACCCCCACCACAAAACGAACCATAAAAAAACCACCAATTACTGTATACCCTAAATTATCTGCTGGGTACCAAAATGCATCCAAAAAAGTTACGGAGCTTTTATAAAAGTGAACTAAAATTCAACAGAAAATATAATGTAATGTTAACAACGAACTCCACCGGAAAGAACATGGACAAAGGGTTAATCCTTAATATCAATATAATATATTACGTTTATATATCATACCATAGGCGTTGGACTGTTTTTT
Unaligned ( gi|10 ): CCCTGCCTTATGTGTCTGGTGAAGGTAGATTTGGAAAAGTATTTAACACGCAGTTAATTTTCAATTTCAGATAAATCATGGTTGGGGGGGGGGTGTTACATCACATACAAGATGTGAATTGGTGTACAGTCAAACCAATGGACCATTGGAAACAGTTCGTGCTAGAGAGTACTCGAACTATCGAGGTTATAGTATGTTCCAATCGGAGAAGGAACAACAAAAATGGTTTGCGACATTCATGGTGTTCGAGCCATTGCACTTTCAAGCCAATGCATGAGCCATCGAAATCCCATTGTATTTCTGACATATATTCACATTGAAAATATTTTTTTAAATAGTCAAAAGTTAAACCTCGAAAACTAGGCGACCTTATTTTGTGTATTTCGGCAAAGTCGGTTTTGATATTCAGAAAATTCGGAGAGGGCTCAAGGCAATTGATATATA
Unaligned ( gi|16 ): CTTTTATAACATGCTATGGACTAGTGTACAATATTAACAGTGCACAATATTAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATATCCCCCTGGGATTATATTTCAAAAGAATCATAGTGTAAATACAATTAATCACATTTGGAAAATGCTTAATATAAGTTCCGTCCGGAAATGCTTCAATGTCAGCTTCTGGGAGG
Unaligned ( gi|19 ): TTTCATGATATTTTGTGAATTAAAAAATCTTGAGTAGCTGCTCGAAGTTGACAACGGACGCACAAATTAATTCAACGAAAAGAGGGGGTAACTTGTACAATATACTACTGCAGAGCTGTAGTGTTATGGTATTATAGCATGGTCAGACAAAAATATAAAAC
Unaligned ( gi|20 ): AAAATGAATCAAAAAAGTTACGAAGCTTTTAATAAGTGAACTAAAATCAGCAGAAATTATGTAAAGTTAACACGAAATCACCGGAAAACATGGACAAAGGTTAATACTTAATATTCAAT
Unaligned ( gi|21 ): AAGTTTCATGAAATATTGTGAATTAAAAATTATTGAGTAGCTGTTCGAAGTTGACAACGGATGCACAAATGAATTCAACGAAAAGAG
Unaligned ( gi|22 ): TGCCTACTGTGTCTGCTCAGAGGGCAAAATTGGAGAAATGTGTAACAAAAGTCAGTACATCTTAGTGATTGAATGTTT
Unaligned ( gi|23 ): TGCAAAGTTAGTACTAATATTGGATTGGCATATATACATAACA
Unaligned ( gi|24 ): AACAACAAGGAATCCTTTGATGAGGCCTGGTTAAGGTTGG
Unaligned ( gi|25 ): TAGCATGCCGGCCCTGATTTGCCAAGCTACGTTAGCA
Unaligned ( gi|26 ): ACATCACACACAAGTTGTGGATTGGTGCACA
Alignments
lowQualScore : 22222222222222 4444444444444444444444444444444444444444 111111 11111 222222 11111 222222222222 111 11 111 1111 33333 1111111 55555555555555555555555555555555555555555 1111 11 11111 222222222 111 111111 111 3333333333333 111111 11111 1111 11 4444444444444444 1111 22222 33333333333 666666666 3333333333333 11 11 22222222 333333 111 1 1 1 3333 1 1 2222222 1 2222 2222 1 11 11 111 222222 1 333333 1 11 1
lowQualScore : 5 5 5 4 77777777777777 4 1111111111111111111111111111111111111111 0 222222 4 4 4 55555 4 22 4 0 6 1 4 333333 4 4 11111 777 55 4 4 55 4 4 1 777 4 99 55 55 99 000000000000 66 3 1 1 1 77 4 4 4 555 2 55 5 000 5 3 5 2222 5 5 6 33333 1 5 5 8888888 0 55555555555555555555555555555555555555555 99 4444 1 6 6 2 22 55555 666666666 88 888 000 777777 2 222 1111111111111 3 7 99 6 666666 6 66666 7 2222 1 6 99 7 6 6 3 8 0 1 99 55 5 7777777777777777 8 1111 5 00000 0 88888888888 22 444444444 99 1 1111111111111 0 0 77 77 55 6 6 11 3 8 8 0 77777777 666666 777 0 0 0 2 0000 3 0 0 5555555 0 1111 1111 0 33 22 444 888888 0 111111 0 33 3 7
lowQualScore : . . . . .............. . ........................................ . ...... . . . ..... . .. . . . . . ...... . . ..... ... .. . . .. . . . ... . .. .. .. .. ............ .. . . . . .. . . . ... . .. . ... . . . .... . . . ..... . . . ....... . ......................................... .. .... . . . . .. ..... ......... .. ... ... ...... . ... ............. . . .. . ...... . ..... . .... . . .. . . . . . . . .. .. . ................ . .... . ..... . ........... .. ......... .. . ............. . . .. .. .. . . .. . . . . ........ ...... ... . . . . .... . . . ....... . .... .... . .. .. ... ...... . ...... . .. . .
lowQualScore : 0 0 0 4 22222222222222 4 6666666666666666666666666666666666666666 1 888888 4 4 4 77777 4 77 4 1 7 0 4 666666 4 4 11111 888 55 0 0 55 0 0 0 000 0 55 55 55 55 555555555555 33 6 0 7 7 11 4 4 4 444 9 99 7 000 7 0 7 1111 0 0 2 11111 4 0 0 6666666 7 77777777777777777777777777777777777777777 22 2222 0 7 7 5 33 22222 777777777 66 000 000 777777 5 333 7777777777777 2 3 22 7 555555 7 77777 8 7777 0 7 22 5 7 7 2 0 8 0 00 44 7 8888888888888888 0 2222 8 00000 8 22222222222 77 222222222 22 0 4444444444444 1 1 00 99 77 7 7 00 8 0 0 8 22222222 555555 555 0 0 0 5 8888 2 0 0 0000000 0 2222 2222 0 88 55 888 888888 0 222222 0 88 3 3
consensus : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATCNG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAA-CCCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GGCAACGGACTTTTTTGTGT----NCTCTG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTTATTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---NGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATACCCAACTGACAATATTTATGTTTTAAC--TTA-AC---A-TATACTTA-TT--GAAGCCTTNATAAT-----AGCGATAAATA--C--------ATGTATTACATGNAA---------ATATAA--GCATGGATGATTTCAA-------------TATGTGTCTGAAATNTGT--A--GTGTAGCATGTTATCCTT-GATATG-CCATGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATGT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAATTAAGGATACAGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA-T-ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGA
Reference ( family-1625 ) : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATCNG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAA-CCCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GGCAACGGACTTTTTTGTGT----NCTCTG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTTATTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---NGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATACCCAACTGACAATATTTATGTTTTAAC--TTA-AC---A-TATACTTA-TT--GAAGCCTTAATAAT-----AGCGATAAATA--C--------ATGTATTACATGNAA---------ATATAA--GCATGGATGATTTCAA-------------TATGTGTCTGAAANATGT--A--GTGTAGCATGTTATCCTT-GATATG-CCATGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATGT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAATTAAGGATACAGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA-T-ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGA
gi|1 : T-GATATGTCCAGGTGATGACAATGAAACATCAATACACACTTGTGTAATTTATA-TTATATAATTTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAA------ATATAGACTATCTTTGTTACTTTTTGGTAAAAAGGAAAACTGAAACC-AATTGAACACATTTTA-GGGACATGTGGAAGTAAGG----TACAAGTACTTATTAAATGACTTTTTGGGAT----AGTT-ATTGATTTTTAACATGAATAA-CCG------GTAGCA--A-TAATCATGTTTACAAATATACTTAAACGCGATTTGTATCCTTGGATCATGTG-AAGA
gi|11 : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTACGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-GTG---G-TTTAAAAATCTG-ACCAGAGAAACAATTTA-GACTCT-----AGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACA-G--A-AT-ATC---G-T---ATATC--CCA--TGA--GA------------TAGTATT--TATAACTAAATTTAC-C-AAATATTCGCCCACATT-CTTCAAAAAAA--CCTACACAAACTTGAAAAA-AGAT-CG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACAATGATTATTCTTATT----CATTGT-CTG-TAATTTCGTTGTTACAAAATGTAATCTATCGCTTACTTACTAGTAAGTAATCGACTCAAAGATCAAATCATttattgccttatggccgtgtaagaatcttttagtgaatacttgttttaatattaataaacaaattgctattaaaaaacccataaaaaaggatcactttcgtgaaggcctggggaaggttgacgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatgtgtattgataaatcaagaaacataataaaaagtaaatacactgaatatccattttgtaacaggctatagctgactagttttactgaacttttgccacagtagagtcttaataatattctaatgtggggacttcccaaagatgatcatatctgttcgttaatctcaaatgcatacatcgttatacacatttaaaatcatcctgagaccataatattttccggaaagaaacctaaaatcaaaaaaaataaatgtataataaattaattcacagttggcggcttggaaaagattcaacgtcagcttgggggccgtgttcccaaccagggccctggccctggatacccactggggcttttttaaagggcggttctcagacccattcgccgtaattttctcccccaacacaatttttggatccgcctcctgcctatagttttctgattgaaggttagagattcgggaaaagtatttataacacgcgttaattaaagaccatgggtctgggggggggggggggggaggggttacatctcacacaaaagtttgtggatatggtgtacagacaaagcacagggacacgttgaaaacaagttcgagcaaaaggtgtgttcgagcataatcgaagtaaggttcgttcccaatctgagaagagacaataaatatgggtttgcgacattcatagtgttggagtcatttgaattcgagcaaatgagccttcgacgattccatatcattgaatttctgacatatattcaaactgaaaatacaatgtatttcagagtaactgtttcaagaaggcgttgaataacggactaagggtgactcttattctactgtcgtataatagtcctggcaatatagtcggtcttctggagaatcagaaaattcgtgtgagatggggctccatatatagtctacgtataatagagtgtatatcgaaactatcacatacatttcattgacattttgtgtaattaaaatagactcttagtatgtgctatcggaagcttgacaatcgtgacgcacaaattaatttcaacgaaagagggtaacttgtacaatatactagctgcagatctgtagcgttatggtttttatagcatggtcagaaaaaataaaaaacccataacactgcagttctgcagcaacaataccactaggagtgcacagggacgtgaaaaactcaatcaaaaaaaaaaaaaaaaaaaaaaccaccaaacaccacaaaccccccccaaacaaacccacctcgcaacgattatcctacaacagctcgactcgaaaactacccaaaatttatcaattgtgtatcagaacccttatattcatacttatatgtaccgaaaatataataactattcacaatgaaattacgacgcgttctaaatgtggtgaacctccataatgtcagcttcaaattatgaaatactgaaatcaccggaaatatacatgatcagctggtgtgtaatccttatactcataatatattcgcgtccaatgtctcatcctagcgattggcgattgttttt
gi|12 : GTGT-GGA-ATGGGGATGTGA-CTACTAGTAACTAGTATCCGTGG------------------GTATTTTTTTTTTCTTTCTTTTTTGCGCGTTT-CAGACTACATGTAAGT-GTGCTCAGCAACGGAC-TTTTCGG-G---G-TTTAAAAATCGG-ACCAGAGACACATTATG-GACCCTAC---AGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTCA--AAATCATTTT-CAAG-G--A-AC-ATC---GTTA--ATA-A--CCA--TGA--GA------------TAGTATT--TATAAC-AAATGTAC-CAAAAT-TTGGTCCAAATT-CTTC-AAAAAA-CCCTACACAAACTTGGAAAAT-GAT-CG---AAT-TGGTC-AAATGCCGTCGATCACAT-TT-TTCTAAAAATACATCGATTATTCTTATTCA--CTCTGCTCTG-TAt
gi|13 : cCTG---------TAATTGGTTCAAAT--TT---TTG-----GCACCGGACTTATTGTG---TT-----AT---AATTATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATGGGTGTTGAACTGTTGGCCAAAGAGAAGAAAA--AATG-C-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTATATACCC-ACTGACAATATTTATGTTTTAGC-------------CATACTTATTT--GAAGCCTTAATAATAGTGCAGTGATAAATA--C--------ATGCATTACATGTGAATATATAATATATAA--GCACGGATGATTTCAA-------------TATGTGTCTGAAAAATGTACA--GTGTAGCATGTTATCCTTGGATATG-at
gi|14 : TT--AAA-CATATT-C-CGTA--A-AA-ACC---G-TAC-AGGTCATCCA--TGG--GA-------------AGTAC--ATATGGTTACATTTAT-C-AAAA-TTGGCC-ACAT----------------CT---CAAACTTGAAAAA-AGAT-CG---AATGTCGTC-AA-TGCCG----TCATATGTT-TTCTAGAAATACAT--ATC-TTCCTATTGG--CACT-A-CTGGTATTTTCGTGGTAACAAA-TGCA-----TCGATAACTT-------AGTAG----------GATCAA-TCATACAT-CCTTG---------CC-----TTTCT-T--TGGGGGGG--------GGGGGTGGGGG----GATTCTTCGTAAACT-CGTAAACAACGGACTTTTTTATGT----CCTCAG---------TACTTGGTTCCAAT--TT---T
gi|15 : CGGTGTTGGACATGGGGATG-GATCTA-T-----------TCC-T-G------------------TT--T-----------------TTGCGCGTTTTCAGAC------TAAGCAGTGCTCAGCAACGGACATTTTC-G-GAAGG-TTTAAAAATCCGGACCAAGAACACATTTTGTGACCCACAGAAGAAAAAAGATAAGAAGTACGTAGCCTAAGTCCTATTTTTC--AAATCATTTT-GACG-GGAA-AT-ACCAATG-TA--ATATC--CCACATGAAAGA------------TAGTAACT-TATAACTAAATGTA--C-AAAT-TTAGCCCACATTCCCTTATAAAAA-CCCTACACAAACTTGGAAAA
gi|17 : aCGGTAC-GGA-ATGGGGACG-GA-CT--T-----------TTTGT-G------------------TTATT-----------------TTTCACGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-T----------------AAAAAT-----------A-ACAAAATG-AACGCG-----GGGGAAAGA-AATAAGT-CGTT-----AGTC---TTTTTC--AAACAATTTT-CACT-G--A-AT-AGC---G-TA--ATATC--CCA--TGG--GA------------TATTA--TATATGACAACATTAAT-C-AAAT-TTAGCCCACATT-CTTCACAAAAT-C---ACGCAAACTT-GAAAATAatga
gi|18 : A-CT--T-----------TCCGT-G------------------TTACT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-GTG---G-TATAGAATTCTG-AC----------TTA----ACTCG-----GGAGAATGG-AAGAAGT-CGTT-----ATTC---TTTTTC--AAAACATTTT-CATG-G--A-AT-AGC---G-TA--ATATT--CGA--TGG--GG------------TAGTATT
gi|2 : ataatccttcttctttgatagggtggacaggttttTACATGCAAT--------ATATAA--GCATGGATGATTTTAA-------------TATGTGTCTGAAATATGT--ACAGTGTAGCATGTTATCCTT-GATATG-C-GTGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTTACATTAA----GGATACAGTCT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAA-----------GCATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA---ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGAaa
gi|3 : CGGTGT-GGA-ATGGCGATG-GA-CT--T-----------TCTGT-G------------------TTATT-----------------TTACGCG-------------------C-GTGCTCAGCAACGGAC-TTTTC-GTG---G-TTTAAAAATCTG-ACCAGAGAAACAATATG-GACTCTT----AAAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ATC---G-TA--ATATC--CCT--TGA--GA------------TGGTATTTATA--ACC---TTTAT-C-AAAT-TTGGTAAACATT-CTTCAAAAAA--TCCTACACAAACTTAAAAAA-AGAT-CG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACATCGATTATTCTTACTC----ATTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAATATCAAATCATACATGCCTTGGTTTTTTTGTT-----TTTTTGT--T------GTTTTTTTTTAAAAT--GTTGACAGATTTATCGTAAACC-CTT-GGCAACGGACTTTTTTG-GTTAAAATTTTGGCACCAGACTGATTGGGT--AAT--TT---CT------GCACCGGACTTATTGTGT--TT-----------A-TATGTATTATGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---AGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATA----TTA-GGTACGACTATTCGGACTT-ATACCCAACTGACAATATTTATGTTTTAAA---TA-AC---ATTATACTTA-TT--GAAGCCTTAATAAT-----AGCGATAAATA--C--------ATGTATTACAAGAAAT--------ATATAA--ACATGGATGATTTCAA-------------TGTG-----------TAC--A--GTGTAGCTTGTTCTCTCT-GATATG-CCATGTG--GACAAATAAACATCAAT--ACACT-GTGTA-TTTATAATTAT--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACT---TATG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-AT-TGAACACATTTTATGGGA-ATGT-GAAGTA--GTACATACAAG-ACTTATTAAATGATTTT----GATTTTGATTTGATGA--TTTCAATAT--AT-GTCTGAAATGTGTA-CAGTG-T-AGCATG-TTAT--Aacggaaagtacatgtatatatactttggcgtgtactgtcttctagtgaatacttgttttacattaataaacaaattgctattaaacaaccaaaaaagaatcctttggtgaaggtctgggaaggttggacaaatttatttatgtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatatgtattgcaaaatcaaaacataataaaaagaaatacactgcatatattttgtaacatgctatagactagtgcatgtacaatattaactgaactgtacttacagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaatcatccgagatcataatattcggaaagaatcataatgtaaatacaattaattacagttgcggccggaaaagtttcaacgtcagcttctgggaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatttcgtccctccaacaaaattttttggatccgcccctgcctagtgtgtctgatgaaggtagatttgaaaatgtatttaacagtcacgtgcatcttattgttcgaatgtttcagataaaccatgggttgggtgggtacatcacacacaagttgcggattggtgtacagtcaaagcaagggaccattgaaaacagttggagcaaaagggtgttcgagctatcgaagttaaagtacgtttcaatctgagaagggacaataaaaatggtttccgacattcatagtgttggagtcattgcaatt
gi|3 : GATGATTTCAA-------------TATATGTCTGAAATGTGT--ACAGTGTAGCATGTTATAATT-GATATG-CCATGTG--GACAATGAAACATCAATGCACACG-GTGTA-TTTATAATTGTGT---attgatatgccatgtggacaatgaaacatcaatgcacacggtgtatttataattgtgtcat
gi|4 : cggtgtggaatggcgatggactttctgtgttattttacgcgcgtgctcagcaacggacttttcgtggtttaaaaatctgaccagagaaacaatatggactcttaaagaaagaaagaagtcgtaagtctttttcaaatcattttcacggaatatcgtaatatcccttgagatggtatttataacctttatcaaatttggtaaacattcttcaaaaaatcctacacaaacttaaaaaaagatcgaatccgtcaaatgccgtcatgtttttctagaaatacatcgattattcttactcattgactgtattttcgttgttacaaaatgtaatctatcgcttacttagtaatcgactcaaatatcaaatcatacatgccttggtttttttgtttttttgttgtttttttttaaaatgttgacagatttatcgtaaacccttggcaacggacttttttggttaaaattttggcaccagactgattgggtaatttctgcaccggacttattgtgtttatatgtattatgtattgcatttagaatcaagagaaagaaaacattgtggttgaacaggccaaagagaagaaaaatgaccattacgatagtatattaggtacgactattcggacttatacccaactgacaatatttatgttttaaataacattatacttattgaagccttaataatagcgataaatacatgtattacaagaaatatataaacatggatgatttcaatgtgtacagtgtagcttgttctctctgatatgccatgtggacaaataaacatcaatacactgtgtatttataattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacttatgtactttttgtaaaaaggaaactgaaaccattgaacacattttatgggaatgtgaagtagtacatacaagacttattaaatgattttgattttgatttCGGTGT-GGA-ATGGGGACG-GA-CT--C-----------TCCGT-GG-----------------TTTTT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATTGG-ACCAGAGACACATTATG-GACCCT-----ACAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTATC--AAATCATTTT-TACG-G--A-AT-ATC---G-TA--ATGTC--CCA--TGA--GA------------TAGTATTTATATAACTAAATGTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAAACCCTACA--AACTTGGAAAATAAAT-AGTACAAT-TTGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTCTGACACTGA-CTG-TATTTTCGTTGTTAAAAGATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTATCGTAAACC-CTT-GGCAACGGATTTTTTTGTGT----GCTCTG---------TAATTGGTTCAAAT--TT---TTG-----GCACCGGACTATTTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAATACATTGTGGTTGAAC---TGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-AGTACGACTAATCGGACTA-ATACCCAACTGACAATATT--TGTTTTAACTTTTA-AC---A-TATACTTA-TT--G----------AAT-----AGCGATAAATACGC--------ATGCATTACATGC-A---------ATATAA--GGATGGATGATTTCAA-------------TATGTGTCTGAAAAATGT--A--GTGTAGCATGTTATCCTT-GACATG-CCATGTG--GACAATGAAACACCAATACACACT-GTGTA-TTTATAATTATNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTTGCATTAATTAAGAATGCTGACC---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACCAA--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTACTAAATGACTTT----GAT----AGTT-ATTG--TTATAACATG-AT-A-CCG------GTA-CA-TATT-ATCATG-TTAC--ATATACTTGAACGAGA-TTGTATCCTTGGATCAAGTGTAAGAcat
gi|6 : CGGTGG-GGA-ATGGAGACG-GA-CT--T-----------CCTGT-G------------------TTATT-----------------TTCCGCGTTACCAGAA------TAAGC-GTACTCAGCAACGGAC-TT----G-A---A-TTT-------TG-ACTGGAGTAATAAAATG-GACTCG-----GGAGAAAGA-CAGAAGT-CTTT-----AGTC---TTTTGA--AAAT-ATTAT-CAAG-A--C-TT-AGA---A-TA--ATATC--CCA--TGG--GA------------TAGAATTTATA--ACTACATTTAT-C-AAAT-TTGAACCACATT-CTTCAAAAAT--TCTTACACAAACTTGACACAAAGAT-CG---AAT-TCGGT-AAATGCCG----TCATGT-TT-TTCTAGAAATTTATCGATTCTCCTTATTC----ACTTA-CTG-TATTTTCATGGTTACAAAATGTAATCTATAACTTTCTT-------AGCAATCGACTGAAAGATCAAATCATATATGCCTTG---------TTGTTGATTTTT-TTAT------G--------GAAAAT--GTT----GATATCTCATAAACCTTTT-GACAACGTAC-TGTTTGTGT----CCTCAG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTGATTGAGTCATTTCTGCATCGAAA-T---TATTTTGTTGATTTGTATTATGTATTAATGAAGAGAA-----AGAAAACTCTGTAACTGAAC---AGACCAAAGAGAAG-AAA--AA-GTCATATCAT-GAAAGTACTTTAT
gi|6 : ttcaCAATATTTGTGTGTTTAC--ATACATGTAA-TATACTTA-TTTAAAAGCCTTCATAAT-----GATGATAAA----------------TATTATATGAAAGGCGTAGT-ACGTAATTGTATGGGCGATTTCAA-------------T-TTCATCTGAAATTTGT--A--agcaatatttgtgtgtttacatacatgtaatatacttatttaaaagccttcataatgatgataaatattatatgaaaggcgtagtacgtaattgtatgggcgatttcaatttcatctgaaatttgtaacagttg
gi|7 : ttcacggtggggaatggagacggacttcctgtgttattttccgcgttaccagaataagcgtactcagcaacggacttgaattttgactggagtaataaaatggactcgggagaaagacagaagtctttagtcttttgaaaatattatcaagacttagaataatatcccatgggatagaatttataactacatttatcaaatttgaaccacattcttcaaaaattcttacacaaacttgacacaaagatcgaattcggtaaatgccgtcatgtttttctagaaatttatcgattctccttattcacttactgtattttcatggttacaaaatgtaatctataactttcttagcaatcgactgaaagatcaaatcatatatgccttgttgttgatttttttatggaaaatgttgatatctcataaaccttttgacaacgtactgtttgtgtcctcagtaattggttccaatttttggcaccggactgattgagtcatttctgcatcgaaattattttgttgatttgtattatgtattaatgaagagaaagaaaactctgtaactgaacagaccaaagagaagaaaaagtcatatcatgaaagtactttatag-GGA-ATGGGGACG-GA-CT--A-----------TCCGT-GGTTTTTTTTGTTGGATTTTTTTT-----------------TTGCGCGTTTCCAGAC------TAATC-GTGCTCAGCAACGGAC-TTTTC-G-G---GATTTAAAAATCGG-ACCAGAGACACATTATG-GACCCT-----ACAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTCAAAAATCATTTTCCACG-G--ATATAAAC---G-TAGTATATC--CCA--TGGA-GATAGACTAAATACTAGTATTTATACA--TAAATGTACGA-AAAT-TTGGCGCACATT-CTTCAAAAAAG-CCCTTAACAAACTT-GAAGAT-GATGCG---AAT-T-GTCAAAATGCCG----TCACGT-TT-TTGTAGAAATGCATCGATTATTCTTATT----CACTGA-CTG-TATTTTCTTTGTTAAAAGATATAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCCTTG---------TT-----TTTTT-T-------------------AAAAT--GTT----GATCTATCGTAAACC-CTT-GG-AACGAA--TTTTTGTGT----GCTCTG---------TCATTGGTT--AA--------TTG-----GCATCGGA--TATTGTGT--TT-----AA---AA-TATG--TTTTGT--A-TTGCGTT---T--GACT-------------------CTTTGTGGTTGAAC---AG--CAACGAGAAG-AAAAGAGTGAC-CATTACGGATAGT-TATTATTTAGGGCACGA-TAATCGTACTA-ATACC--ACTGAC-ATA-TTATGTacagttg
gi|9 : T-TTATTCTAGTAATACATCGATT---CTTATTC----ACCAA-CTG-TATTTTCGTTGTTACAAAATGTAAACTATAACTTACTT-------AGCAATCGACTGAAACATCAAATCATACATGTC---------------------TTT-A--G------G--------GGGGGG--GGT----GACTTCTCCTAAACC-TTT-GAAAACGGAC-TTTTTGTGC----CCTat
gi|9 : AATTGGTTCCAACGATTAGGTTATATCTGCACCGGAATTATCTTGG--TC-----AT--------TG------GT--A-T--CAT--------AATGAAGAGAATTGAAAGAAAAC--TCTGGCTGAA----GGGCCAAAGAGAAG-AAA--AATTCC-GATCAT-AATAGTACATTA-----GGTAAGAC------------ACA------TGGTAATATTT--GTTTG-----TTC-AC---A-AATACTTA-TT--AGGGTCTTTATAAT-----GATGATAAATA--TTATATGAAATGTGTGGTACGTAA---------TTAT------ATGGGTGATATAAATCCTGTAAAGATGTATGTGTCTGAAATTTGT--A--nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattggttccaacgattaggttatatctgcaccggaattatcttggtcattggtatcataatgaagagaattgaaagaaaactctggctgaagggccaaagagaagaaaaattccgatcataatagtacattaggtaagacacatggtaatatttgtttgttcacaaatacttattagggtctttataatgatgataaatattatatgaaatgtgtggtacgtaattatatgggtgatataaatcctgtaaagatgtatgtgtctgaaatttgtaacagttga
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACTCTTGACGTGATACAGTCTTCTAGTGAATACTTGTTTAATTAATAAACAATTGCTATTAAAAAAAAAAACAATAAAGGAATCTTTTGTGAGGCCTGGAAGGTTGGACAAATTATTGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTGTGTGTGTTTGCCAAAATCAAAACAAATAAAAAGAAAACACTGAATATTCTTTTTGTAACATGCTATAGACTAGTGTACAAATATAACTGAATTTTGCCACAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATCATCCTGAAATCATAATATTCGAAGAATCATGATTGGTAAATAACAATTAATCAATAGTTGCGAACCGGAAAAGCTTCAAACGTCAGCTTCCTGAGAGGCCGTTAATCACATTAAGCGGTTTTCCAGGATCCTTCGCCGAATTTTATCGTCCCCCCTCCCACATCACACACCACATTTTTTGGGATACGCACCCCTGCCTAGTGTGTCCTGATGAGGTAGATTCGGAAAAGTATTTAACACGCAGTTAATTTTTCAATTTCAGTAAACCATGGGTTGGGGGGGGGGGGGGGTTACCAATCACACACAAGTTGTGGATGGTACAATCAAAGCAAGGGACCATTGAAACAGTTGGAGCAAAAGGGTGTTCGAGCTATCGAATTAAAAAGTACGTTCCAATCTGAGAAGGGACAACAAAATGGTATGCGAGAGACATTCATAGTGTTACGAAGTCATTGCAATTCGAGCCAATGAGCCTTCGTAATCCCATTGATTTCTGCATAATTTCAGAAACTGAAAATACATGTATTTCAGAGTAAAACGTCGAAAAACTAGGGGACTTTATTAAGTGTGTAATTTCGGCAAGTCGGTTTTTTGAAATTCAGAAAATCGGAAGAGGACTCAAGGCAATTGATATATAAAAA
Unaligned ( gi|8 ): ACAGTTTTCATGACATTTTGTGATTTAAAATATTTGAGTTAGCTGCTCGAGTTGAACAAGCGGACGTCACGCGACAATTAATTCAACAAAAGAGGGGATAAACTTTGTACAAAGTTATACTAGCTGCGATCTGTAGCGTTCATAACATGGTCAGACCAAAAAATATAAACCATAACGCTGCAGCTAACAATATACTGAGAGTGCACCAGGAGACGTGAAAAACTCTACCCTAAAAAAACCAAAAACAAAAACACAAAACACCCCCCCCCAACAAAAAAAAACCCCCACCACAAAACGAACCATAAAAAAACCACCAATTACTGTATACCCTAAATTATCTGCTGGGTACCAAAATGCATCCAAAAAAGTTACGGAGCTTTTATAAAAGTGAACTAAAATTCAACAGAAAATATAATGTAATGTTAACAACGAACTCCACCGGAAAGAACATGGACAAAGGGTTAATCCTTAATATCAATATAATATATTACGTTTATATATCATACCATAGGCGTTGGACTGTTTTTT
Unaligned ( gi|10 ): CCCTGCCTTATGTGTCTGGTGAAGGTAGATTTGGAAAAGTATTTAACACGCAGTTAATTTTCAATTTCAGATAAATCATGGTTGGGGGGGGGGTGTTACATCACATACAAGATGTGAATTGGTGTACAGTCAAACCAATGGACCATTGGAAACAGTTCGTGCTAGAGAGTACTCGAACTATCGAGGTTATAGTATGTTCCAATCGGAGAAGGAACAACAAAAATGGTTTGCGACATTCATGGTGTTCGAGCCATTGCACTTTCAAGCCAATGCATGAGCCATCGAAATCCCATTGTATTTCTGACATATATTCACATTGAAAATATTTTTTTAAATAGTCAAAAGTTAAACCTCGAAAACTAGGCGACCTTATTTTGTGTATTTCGGCAAAGTCGGTTTTGATATTCAGAAAATTCGGAGAGGGCTCAAGGCAATTGATATATA
Unaligned ( gi|16 ): CTTTTATAACATGCTATGGACTAGTGTACAATATTAACAGTGCACAATATTAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATATCCCCCTGGGATTATATTTCAAAAGAATCATAGTGTAAATACAATTAATCACATTTGGAAAATGCTTAATATAAGTTCCGTCCGGAAATGCTTCAATGTCAGCTTCTGGGAGG
Unaligned ( gi|19 ): TTTCATGATATTTTGTGAATTAAAAAATCTTGAGTAGCTGCTCGAAGTTGACAACGGACGCACAAATTAATTCAACGAAAAGAGGGGGTAACTTGTACAATATACTACTGCAGAGCTGTAGTGTTATGGTATTATAGCATGGTCAGACAAAAATATAAAAC
Unaligned ( gi|20 ): AAAATGAATCAAAAAAGTTACGAAGCTTTTAATAAGTGAACTAAAATCAGCAGAAATTATGTAAAGTTAACACGAAATCACCGGAAAACATGGACAAAGGTTAATACTTAATATTCAAT
Unaligned ( gi|21 ): AAGTTTCATGAAATATTGTGAATTAAAAATTATTGAGTAGCTGTTCGAAGTTGACAACGGATGCACAAATGAATTCAACGAAAAGAG
Unaligned ( gi|22 ): TGCCTACTGTGTCTGCTCAGAGGGCAAAATTGGAGAAATGTGTAACAAAAGTCAGTACATCTTAGTGATTGAATGTTT
Unaligned ( gi|23 ): TGCAAAGTTAGTACTAATATTGGATTGGCATATATACATAACA
Unaligned ( gi|24 ): AACAACAAGGAATCCTTTGATGAGGCCTGGTTAAGGTTGG
Unaligned ( gi|25 ): TAGCATGCCGGCCCTGATTTGCCAAGCTACGTTAGCA
Unaligned ( gi|26 ): ACATCACACACAAGTTGTGGATTGGTGCACA
Alignments
lowQualScore : 22222222222222 4444444444444444444444444444444444444444 111111 11111 222222 11111 222222222222 111 11 111 1111 33333 1111111 55555555555555555555555555555555555555555 1111 11 11111 222222222 111 111111 111 3333333333333 111111 11111 1111 11 4444444444444444 1111 22222 33333333333 666666666 3333333333333 11 11 22222222 333333 111 1 1 1 3333 1 1 2222222 1 2222 2222 1 11 11 111 222222 1 333333 1 11 1
lowQualScore : 5 5 5 4 77777777777777 4 1111111111111111111111111111111111111111 0 222222 4 4 4 55555 4 22 4 0 6 1 4 333333 4 4 11111 777 55 4 4 55 4 4 1 777 4 99 55 55 99 000000000000 66 3 1 1 1 77 4 4 4 555 2 55 5 000 5 3 5 2222 5 5 6 33333 1 5 5 8888888 0 55555555555555555555555555555555555555555 99 4444 1 6 6 2 22 55555 666666666 88 888 000 777777 2 222 1111111111111 3 7 99 6 666666 6 66666 7 2222 1 6 99 7 6 6 3 8 0 1 99 55 5 7777777777777777 8 1111 3 00000 0 88888888888 22 444444444 99 1 1111111111111 0 0 44 77 55 6 6 11 3 8 8 0 77777777 666666 777 0 0 0 2 0000 3 0 0 5555555 0 1111 1111 0 33 22 444 888888 0 111111 0 33 3 7
lowQualScore : . . . . .............. . ........................................ . ...... . . . ..... . .. . . . . . ...... . . ..... ... .. . . .. . . . ... . .. .. .. .. ............ .. . . . . .. . . . ... . .. . ... . . . .... . . . ..... . . . ....... . ......................................... .. .... . . . . .. ..... ......... .. ... ... ...... . ... ............. . . .. . ...... . ..... . .... . . .. . . . . . . . .. .. . ................ . .... . ..... . ........... .. ......... .. . ............. . . .. .. .. . . .. . . . . ........ ...... ... . . . . .... . . . ....... . .... .... . .. .. ... ...... . ...... . .. . .
lowQualScore : 0 0 0 4 22222222222222 4 6666666666666666666666666666666666666666 1 888888 4 4 4 77777 4 77 4 1 7 0 4 666666 4 4 11111 888 55 0 0 55 0 0 0 000 0 55 55 55 55 555555555555 33 6 0 7 7 11 4 4 4 444 9 99 7 000 7 0 7 1111 0 0 2 11111 4 0 0 6666666 7 77777777777777777777777777777777777777777 22 2222 0 7 7 5 33 22222 777777777 66 000 000 777777 5 333 7777777777777 2 3 22 7 555555 7 77777 8 7777 0 7 22 5 7 7 2 0 8 0 00 44 7 8888888888888888 0 2222 8 00000 8 22222222222 77 222222222 22 0 4444444444444 1 1 99 99 77 7 7 00 8 0 0 8 22222222 555555 555 0 0 0 5 8888 2 0 0 0000000 0 2222 2222 0 88 55 888 888888 0 222222 0 88 3 3
consensus : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATCNG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAA-CCCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GGCAACGGACTTTTTTGTGT----NCTCTG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTTATTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---NGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATACCCAACTGACAATATTTATGTTTTAAC--TTA-AC---A-TATACTTA-TT--GAAGCCTTNATAAT-----AGCGATAAATA--C--------ATGTATTACATGNAA---------ATATAA--GCATGGATGATTTCAA-------------TATGTGTCTGAAATNTGT--A--GTGTAGCATGTTATCCTT-GATATG-CCATGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATGT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAATTAAGGATACAGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA-T-ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGA
Reference ( family-1625 ) : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATCNG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAA-CCCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GGCAACGGACTTTTTTGTGT----NCTCTG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTTATTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---NGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATACCCAACTGACAATATTTATGTTTTAAC--TTA-AC---A-TATACTTA-TT--GAAGCCTTNATAAT-----AGCGATAAATA--C--------ATGTATTACATGNAA---------ATATAA--GCATGGATGATTTCAA-------------TATGTGTCTGAAATNTGT--A--GTGTAGCATGTTATCCTT-GATATG-CCATGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATGT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAATTAAGGATACAGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA-T-ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGA
gi|1 : T-GATATGTCCAGGTGATGACAATGAAACATCAATACACACTTGTGTAATTTATA-TTATATAATTTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAA------ATATAGACTATCTTTGTTACTTTTTGGTAAAAAGGAAAACTGAAACC-AATTGAACACATTTTA-GGGACATGTGGAAGTAAGG----TACAAGTACTTATTAAATGACTTTTTGGGAT----AGTT-ATTGATTTTTAACATGAATAA-CCG------GTAGCA--A-TAATCATGTTTACAAATATACTTAAACGCGATTTGTATCCTTGGATCATGTG-AAGA
gi|11 : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTACGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-GTG---G-TTTAAAAATCTG-ACCAGAGAAACAATTTA-GACTCT-----AGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACA-G--A-AT-ATC---G-T---ATATC--CCA--TGA--GA------------TAGTATT--TATAACTAAATTTAC-C-AAATATTCGCCCACATT-CTTCAAAAAAA--CCTACACAAACTTGAAAAA-AGAT-CG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACAATGATTATTCTTATT----CATTGT-CTG-TAATTTCGTTGTTACAAAATGTAATCTATCGCTTACTTACTAGTAAGTAATCGACTCAAAGATCAAATCATttattgccttatggccgtgtaagaatcttttagtgaatacttgttttaatattaataaacaaattgctattaaaaaacccataaaaaaggatcactttcgtgaaggcctggggaaggttgacgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatgtgtattgataaatcaagaaacataataaaaagtaaatacactgaatatccattttgtaacaggctatagctgactagttttactgaacttttgccacagtagagtcttaataatattctaatgtggggacttcccaaagatgatcatatctgttcgttaatctcaaatgcatacatcgttatacacatttaaaatcatcctgagaccataatattttccggaaagaaacctaaaatcaaaaaaaataaatgtataataaattaattcacagttggcggcttggaaaagattcaacgtcagcttgggggccgtgttcccaaccagggccctggccctggatacccactggggcttttttaaagggcggttctcagacccattcgccgtaattttctcccccaacacaatttttggatccgcctcctgcctatagttttctgattgaaggttagagattcgggaaaagtatttataacacgcgttaattaaagaccatgggtctgggggggggggggggggaggggttacatctcacacaaaagtttgtggatatggtgtacagacaaagcacagggacacgttgaaaacaagttcgagcaaaaggtgtgttcgagcataatcgaagtaaggttcgttcccaatctgagaagagacaataaatatgggtttgcgacattcatagtgttggagtcatttgaattcgagcaaatgagccttcgacgattccatatcattgaatttctgacatatattcaaactgaaaatacaatgtatttcagagtaactgtttcaagaaggcgttgaataacggactaagggtgactcttattctactgtcgtataatagtcctggcaatatagtcggtcttctggagaatcagaaaattcgtgtgagatggggctccatatatagtctacgtataatagagtgtatatcgaaactatcacatacatttcattgacattttgtgtaattaaaatagactcttagtatgtgctatcggaagcttgacaatcgtgacgcacaaattaatttcaacgaaagagggtaacttgtacaatatactagctgcagatctgtagcgttatggtttttatagcatggtcagaaaaaataaaaaacccataacactgcagttctgcagcaacaataccactaggagtgcacagggacgtgaaaaactcaatcaaaaaaaaaaaaaaaaaaaaaaccaccaaacaccacaaaccccccccaaacaaacccacctcgcaacgattatcctacaacagctcgactcgaaaactacccaaaatttatcaattgtgtatcagaacccttatattcatacttatatgtaccgaaaatataataactattcacaatgaaattacgacgcgttctaaatgtggtgaacctccataatgtcagcttcaaattatgaaatactgaaatcaccggaaatatacatgatcagctggtgtgtaatccttatactcataatatattcgcgtccaatgtctcatcctagcgattggcgattgttttt
gi|12 : GTGT-GGA-ATGGGGATGTGA-CTACTAGTAACTAGTATCCGTGG------------------GTATTTTTTTTTTCTTTCTTTTTTGCGCGTTT-CAGACTACATGTAAGT-GTGCTCAGCAACGGAC-TTTTCGG-G---G-TTTAAAAATCGG-ACCAGAGACACATTATG-GACCCTAC---AGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTCA--AAATCATTTT-CAAG-G--A-AC-ATC---GTTA--ATA-A--CCA--TGA--GA------------TAGTATT--TATAAC-AAATGTAC-CAAAAT-TTGGTCCAAATT-CTTC-AAAAAA-CCCTACACAAACTTGGAAAAT-GAT-CG---AAT-TGGTC-AAATGCCGTCGATCACAT-TT-TTCTAAAAATACATCGATTATTCTTATTCA--CTCTGCTCTG-TAt
gi|13 : cCTG---------TAATTGGTTCAAAT--TT---TTG-----GCACCGGACTTATTGTG---TT-----AT---AATTATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATGGGTGTTGAACTGTTGGCCAAAGAGAAGAAAA--AATG-C-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTATATACCC-ACTGACAATATTTATGTTTTAGC-------------CATACTTATTT--GAAGCCTTAATAATAGTGCAGTGATAAATA--C--------ATGCATTACATGTGAATATATAATATATAA--GCACGGATGATTTCAA-------------TATGTGTCTGAAAAATGTACA--GTGTAGCATGTTATCCTTGGATATG-at
gi|14 : TT--AAA-CATATT-C-CGTA--A-AA-ACC---G-TAC-AGGTCATCCA--TGG--GA-------------AGTAC--ATATGGTTACATTTAT-C-AAAA-TTGGCC-ACAT----------------CT---CAAACTTGAAAAA-AGAT-CG---AATGTCGTC-AA-TGCCG----TCATATGTT-TTCTAGAAATACAT--ATC-TTCCTATTGG--CACT-A-CTGGTATTTTCGTGGTAACAAA-TGCA-----TCGATAACTT-------AGTAG----------GATCAA-TCATACAT-CCTTG---------CC-----TTTCT-T--TGGGGGGG--------GGGGGTGGGGG----GATTCTTCGTAAACT-CGTAAACAACGGACTTTTTTATGT----CCTCAG---------TACTTGGTTCCAAT--TT---T
gi|15 : CGGTGTTGGACATGGGGATG-GATCTA-T-----------TCC-T-G------------------TT--T-----------------TTGCGCGTTTTCAGAC------TAAGCAGTGCTCAGCAACGGACATTTTC-G-GAAGG-TTTAAAAATCCGGACCAAGAACACATTTTGTGACCCACAGAAGAAAAAAGATAAGAAGTACGTAGCCTAAGTCCTATTTTTC--AAATCATTTT-GACG-GGAA-AT-ACCAATG-TA--ATATC--CCACATGAAAGA------------TAGTAACT-TATAACTAAATGTA--C-AAAT-TTAGCCCACATTCCCTTATAAAAA-CCCTACACAAACTTGGAAAA
gi|17 : aCGGTAC-GGA-ATGGGGACG-GA-CT--T-----------TTTGT-G------------------TTATT-----------------TTTCACGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-T----------------AAAAAT-----------A-ACAAAATG-AACGCG-----GGGGAAAGA-AATAAGT-CGTT-----AGTC---TTTTTC--AAACAATTTT-CACT-G--A-AT-AGC---G-TA--ATATC--CCA--TGG--GA------------TATTA--TATATGACAACATTAAT-C-AAAT-TTAGCCCACATT-CTTCACAAAAT-C---ACGCAAACTT-GAAAATAatga
gi|18 : A-CT--T-----------TCCGT-G------------------TTACT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-GTG---G-TATAGAATTCTG-AC----------TTA----ACTCG-----GGAGAATGG-AAGAAGT-CGTT-----ATTC---TTTTTC--AAAACATTTT-CATG-G--A-AT-AGC---G-TA--ATATT--CGA--TGG--GG------------TAGTATT
gi|2 : ataatccttcttctttgatagggtggacaggttttTACATGCAAT--------ATATAA--GCATGGATGATTTTAA-------------TATGTGTCTGAAATATGT--ACAGTGTAGCATGTTATCCTT-GATATG-C-GTGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTTACATTAA----GGATACAGTCT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAA-----------GCATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA---ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGAaa
gi|3 : CGGTGT-GGA-ATGGCGATG-GA-CT--T-----------TCTGT-G------------------TTATT-----------------TTACGCG-------------------C-GTGCTCAGCAACGGAC-TTTTC-GTG---G-TTTAAAAATCTG-ACCAGAGAAACAATATG-GACTCTT----AAAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ATC---G-TA--ATATC--CCT--TGA--GA------------TGGTATTTATA--ACC---TTTAT-C-AAAT-TTGGTAAACATT-CTTCAAAAAA--TCCTACACAAACTTAAAAAA-AGAT-CG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACATCGATTATTCTTACTC----ATTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAATATCAAATCATACATGCCTTGGTTTTTTTGTT-----TTTTTGT--T------GTTTTTTTTTAAAAT--GTTGACAGATTTATCGTAAACC-CTT-GGCAACGGACTTTTTTG-GTTAAAATTTTGGCACCAGACTGATTGGGT--AAT--TT---CT------GCACCGGACTTATTGTGT--TT-----------A-TATGTATTATGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---AGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATA----TTA-GGTACGACTATTCGGACTT-ATACCCAACTGACAATATTTATGTTTTAAA---TA-AC---ATTATACTTA-TT--GAAGCCTTAATAAT-----AGCGATAAATA--C--------ATGTATTACAAGAAAT--------ATATAA--ACATGGATGATTTCAA-------------TGTG-----------TAC--A--GTGTAGCTTGTTCTCTCT-GATATG-CCATGTG--GACAAATAAACATCAAT--ACACT-GTGTA-TTTATAATTAT--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACT---TATG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-AT-TGAACACATTTTATGGGA-ATGT-GAAGTA--GTACATACAAG-ACTTATTAAATGATTTT----GATTTTGATTTGATGA--TTTCAATAT--AT-GTCTGAAATGTGTA-CAGTG-T-AGCATG-TTAT--Aacggaaagtacatgtatatatactttggcgtgtactgtcttctagtgaatacttgttttacattaataaacaaattgctattaaacaaccaaaaaagaatcctttggtgaaggtctgggaaggttggacaaatttatttatgtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatatgtattgcaaaatcaaaacataataaaaagaaatacactgcatatattttgtaacatgctatagactagtgcatgtacaatattaactgaactgtacttacagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaatcatccgagatcataatattcggaaagaatcataatgtaaatacaattaattacagttgcggccggaaaagtttcaacgtcagcttctgggaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatttcgtccctccaacaaaattttttggatccgcccctgcctagtgtgtctgatgaaggtagatttgaaaatgtatttaacagtcacgtgcatcttattgttcgaatgtttcagataaaccatgggttgggtgggtacatcacacacaagttgcggattggtgtacagtcaaagcaagggaccattgaaaacagttggagcaaaagggtgttcgagctatcgaagttaaagtacgtttcaatctgagaagggacaataaaaatggtttccgacattcatagtgttggagtcattgcaatt
gi|3 : GATGATTTCAA-------------TATATGTCTGAAATGTGT--ACAGTGTAGCATGTTATAATT-GATATG-CCATGTG--GACAATGAAACATCAATGCACACG-GTGTA-TTTATAATTGTGT---attgatatgccatgtggacaatgaaacatcaatgcacacggtgtatttataattgtgtcat
gi|4 : cggtgtggaatggcgatggactttctgtgttattttacgcgcgtgctcagcaacggacttttcgtggtttaaaaatctgaccagagaaacaatatggactcttaaagaaagaaagaagtcgtaagtctttttcaaatcattttcacggaatatcgtaatatcccttgagatggtatttataacctttatcaaatttggtaaacattcttcaaaaaatcctacacaaacttaaaaaaagatcgaatccgtcaaatgccgtcatgtttttctagaaatacatcgattattcttactcattgactgtattttcgttgttacaaaatgtaatctatcgcttacttagtaatcgactcaaatatcaaatcatacatgccttggtttttttgtttttttgttgtttttttttaaaatgttgacagatttatcgtaaacccttggcaacggacttttttggttaaaattttggcaccagactgattgggtaatttctgcaccggacttattgtgtttatatgtattatgtattgcatttagaatcaagagaaagaaaacattgtggttgaacaggccaaagagaagaaaaatgaccattacgatagtatattaggtacgactattcggacttatacccaactgacaatatttatgttttaaataacattatacttattgaagccttaataatagcgataaatacatgtattacaagaaatatataaacatggatgatttcaatgtgtacagtgtagcttgttctctctgatatgccatgtggacaaataaacatcaatacactgtgtatttataattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacttatgtactttttgtaaaaaggaaactgaaaccattgaacacattttatgggaatgtgaagtagtacatacaagacttattaaatgattttgattttgatttCGGTGT-GGA-ATGGGGACG-GA-CT--C-----------TCCGT-GG-----------------TTTTT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATTGG-ACCAGAGACACATTATG-GACCCT-----ACAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTATC--AAATCATTTT-TACG-G--A-AT-ATC---G-TA--ATGTC--CCA--TGA--GA------------TAGTATTTATATAACTAAATGTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAAACCCTACA--AACTTGGAAAATAAAT-AGTACAAT-TTGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTCTGACACTGA-CTG-TATTTTCGTTGTTAAAAGATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTATCGTAAACC-CTT-GGCAACGGATTTTTTTGTGT----GCTCTG---------TAATTGGTTCAAAT--TT---TTG-----GCACCGGACTATTTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAATACATTGTGGTTGAAC---TGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-AGTACGACTAATCGGACTA-ATACCCAACTGACAATATT--TGTTTTAACTTTTA-AC---A-TATACTTA-TT--G----------AAT-----AGCGATAAATACGC--------ATGCATTACATGC-A---------ATATAA--GGATGGATGATTTCAA-------------TATGTGTCTGAAAAATGT--A--GTGTAGCATGTTATCCTT-GACATG-CCATGTG--GACAATGAAACACCAATACACACT-GTGTA-TTTATAATTATNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTTGCATTAATTAAGAATGCTGACC---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACCAA--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTACTAAATGACTTT----GAT----AGTT-ATTG--TTATAACATG-AT-A-CCG------GTA-CA-TATT-ATCATG-TTAC--ATATACTTGAACGAGA-TTGTATCCTTGGATCAAGTGTAAGAcat
gi|6 : CGGTGG-GGA-ATGGAGACG-GA-CT--T-----------CCTGT-G------------------TTATT-----------------TTCCGCGTTACCAGAA------TAAGC-GTACTCAGCAACGGAC-TT----G-A---A-TTT-------TG-ACTGGAGTAATAAAATG-GACTCG-----GGAGAAAGA-CAGAAGT-CTTT-----AGTC---TTTTGA--AAAT-ATTAT-CAAG-A--C-TT-AGA---A-TA--ATATC--CCA--TGG--GA------------TAGAATTTATA--ACTACATTTAT-C-AAAT-TTGAACCACATT-CTTCAAAAAT--TCTTACACAAACTTGACACAAAGAT-CG---AAT-TCGGT-AAATGCCG----TCATGT-TT-TTCTAGAAATTTATCGATTCTCCTTATTC----ACTTA-CTG-TATTTTCATGGTTACAAAATGTAATCTATAACTTTCTT-------AGCAATCGACTGAAAGATCAAATCATATATGCCTTG---------TTGTTGATTTTT-TTAT------G--------GAAAAT--GTT----GATATCTCATAAACCTTTT-GACAACGTAC-TGTTTGTGT----CCTCAG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTGATTGAGTCATTTCTGCATCGAAA-T---TATTTTGTTGATTTGTATTATGTATTAATGAAGAGAA-----AGAAAACTCTGTAACTGAAC---AGACCAAAGAGAAG-AAA--AA-GTCATATCAT-GAAAGTACTTTAT
gi|6 : ttcaCAATATTTGTGTGTTTAC--ATACATGTAA-TATACTTA-TTTAAAAGCCTTCATAAT-----GATGATAAA----------------TATTATATGAAAGGCGTAGT-ACGTAATTGTATGGGCGATTTCAA-------------T-TTCATCTGAAATTTGT--A--agcaatatttgtgtgtttacatacatgtaatatacttatttaaaagccttcataatgatgataaatattatatgaaaggcgtagtacgtaattgtatgggcgatttcaatttcatctgaaatttgtaacagttg
gi|7 : ttcacggtggggaatggagacggacttcctgtgttattttccgcgttaccagaataagcgtactcagcaacggacttgaattttgactggagtaataaaatggactcgggagaaagacagaagtctttagtcttttgaaaatattatcaagacttagaataatatcccatgggatagaatttataactacatttatcaaatttgaaccacattcttcaaaaattcttacacaaacttgacacaaagatcgaattcggtaaatgccgtcatgtttttctagaaatttatcgattctccttattcacttactgtattttcatggttacaaaatgtaatctataactttcttagcaatcgactgaaagatcaaatcatatatgccttgttgttgatttttttatggaaaatgttgatatctcataaaccttttgacaacgtactgtttgtgtcctcagtaattggttccaatttttggcaccggactgattgagtcatttctgcatcgaaattattttgttgatttgtattatgtattaatgaagagaaagaaaactctgtaactgaacagaccaaagagaagaaaaagtcatatcatgaaagtactttatag-GGA-ATGGGGACG-GA-CT--A-----------TCCGT-GGTTTTTTTTGTTGGATTTTTTTT-----------------TTGCGCGTTTCCAGAC------TAATC-GTGCTCAGCAACGGAC-TTTTC-G-G---GATTTAAAAATCGG-ACCAGAGACACATTATG-GACCCT-----ACAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTCAAAAATCATTTTCCACG-G--ATATAAAC---G-TAGTATATC--CCA--TGGA-GATAGACTAAATACTAGTATTTATACA--TAAATGTACGA-AAAT-TTGGCGCACATT-CTTCAAAAAAG-CCCTTAACAAACTT-GAAGAT-GATGCG---AAT-T-GTCAAAATGCCG----TCACGT-TT-TTGTAGAAATGCATCGATTATTCTTATT----CACTGA-CTG-TATTTTCTTTGTTAAAAGATATAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCCTTG---------TT-----TTTTT-T-------------------AAAAT--GTT----GATCTATCGTAAACC-CTT-GG-AACGAA--TTTTTGTGT----GCTCTG---------TCATTGGTT--AA--------TTG-----GCATCGGA--TATTGTGT--TT-----AA---AA-TATG--TTTTGT--A-TTGCGTT---T--GACT-------------------CTTTGTGGTTGAAC---AG--CAACGAGAAG-AAAAGAGTGAC-CATTACGGATAGT-TATTATTTAGGGCACGA-TAATCGTACTA-ATACC--ACTGAC-ATA-TTATGTacagttg
gi|9 : T-TTATTCTAGTAATACATCGATT---CTTATTC----ACCAA-CTG-TATTTTCGTTGTTACAAAATGTAAACTATAACTTACTT-------AGCAATCGACTGAAACATCAAATCATACATGTC---------------------TTT-A--G------G--------GGGGGG--GGT----GACTTCTCCTAAACC-TTT-GAAAACGGAC-TTTTTGTGC----CCTat
gi|9 : AATTGGTTCCAACGATTAGGTTATATCTGCACCGGAATTATCTTGG--TC-----AT--------TG------GT--A-T--CAT--------AATGAAGAGAATTGAAAGAAAAC--TCTGGCTGAA----GGGCCAAAGAGAAG-AAA--AATTCC-GATCAT-AATAGTACATTA-----GGTAAGAC------------ACA------TGGTAATATTT--GTTTG-----TTC-AC---A-AATACTTA-TT--AGGGTCTTTATAAT-----GATGATAAATA--TTATATGAAATGTGTGGTACGTAA---------TTAT------ATGGGTGATATAAATCCTGTAAAGATGTATGTGTCTGAAATTTGT--A--nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattggttccaacgattaggttatatctgcaccggaattatcttggtcattggtatcataatgaagagaattgaaagaaaactctggctgaagggccaaagagaagaaaaattccgatcataatagtacattaggtaagacacatggtaatatttgtttgttcacaaatacttattagggtctttataatgatgataaatattatatgaaatgtgtggtacgtaattatatgggtgatataaatcctgtaaagatgtatgtgtctgaaatttgtaacagttga
blockSeqs : T C T T ACTAGTAACTAGTA G GTTTTTTTTGTTGGATTTTTTTT TACATG A A G GAAG A CG G C T T ACAGAA T A GCCTA CTA AA C T GA T A T AAT T GT AT CA AA TAGACTAAATAC TA T T A G CG A . C AAC G TA G TAC G G A TCGA G A A CTGAC G T G . GTTTTTTTGTTTTTTTGTTGTTTTTTTT . GACA A T . C CT TAAAA GCACCAGAC CC CGA AGG ATATCT C TCA TCTGCATCGAAA A T TG T ATGTAT C TTGAA A A G . AG A A G T G T T CA A TACATACATGTAA . TAAA A . TTATATGAA CA GGCGTAGT TT C TCCTGTAAAGATG TA . CA G . . A . . NNNNN NNNNNN . . . . C AT T . . GTACA . . TTTG G . G GT AAATGT . GTGT . . . T
blockSeqs : . . . . AT . GTATTTTTTTTTTCTTTCTTTT . . . . TG . CC . C T . TAC . . . . . . . . . . C . . C . . A . TA T T C T C . . . AC G TA . . . C . . . . A CAC G . . . TTGTTGATTTTTTTATG . . A . . C TT G . CA T . G C T ATAA A T . . TA C . A T G . . A . . T . A A CA G AACTTTTAACA . GA C . CGC AA T . C . TG . CA . . . G . . NNNNN TTAAGA . . . . C AA T . . G . . . . . G A . . TATT . . . T
blockSeqs : . . . . T . GTTTTT . . . . TG . CT . A A . TT . . . . . . . . . . C . . . . . . . TA T A A G T . . . AC G AA . . . C . . . . A GGC G . . . TTTTTTTTTG . . C . . C C C . CC T . G C T AAAA A T . . TA G . T A A . . T . . T . A A . A AAATAACAT . AG T . C AA T . G . AA . . . . . A . . . GG . . . . . . T . . G . . . . . . A . . TA . .
blockSeqs : . . . . T . TTATT . . . . G . CT . C T . G . . . . . . . . . . G . . . . . . . TA T C C T T . . . TC A T . . . T . . . . C C T . . . TTTTTTTT . . A . . A C G . CC T . G A T AT . . . . T G . T A G . . A . . . . . . . . TTCACA . G . . . TA . . T . TT . . . . . . . .
blockSeqs : . . . . T . TTACT . . . . G . TG . A A . G . . . . . . . . . . G . . . . . . . TA T T A T T . . . GC G A . . . C . . . . A C G . . . TTTAGG . . C . . . . C . . T . . . G A . . . . . . . . G . . . C . . . . C . . . . TT . . . .
blockSeqs : . . . . C . TTATT . . . . A . CG . C T . T . . . . . . . . . . T . . . . . . . A C T C G C . . . T G A . . . . . . . . . C A . . . . . . . . . .
blockSeqs : . . . . T . TTATT . . . . G . T . . A . G . . . . . . . . . . T . . . . . . . T . T A T T . . . T . T . . . C . . .
blockSeqs : . A . TTT . . . . . . . . . T . T . . . . . . . . . . G . . . . . . . . . . . G . . . . . .
blockSeqs : . . . . . . A . . . . . . .
blockSeqCons : G**** TA C** ******* TTTTTTTTTG******************************* ** C* T** ATAA********* A*** A* ** AACA************ ***** C********** T******** ** **
originalCons : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATCNG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAA-CCCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GGCAACGGACTTTTTTGTGT----NCTCTG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTTATTGTGT--TT-----AT---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---NGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATACCCAACTGACAATATTTATGTTTTAAC--TTA-AC---A-TATACTTA-TT--GAAGCCTTNATAAT-----AGCGATAAATA--C--------ATGTATTACATGNAA---------ATATAA--GCATGGATGATTTCAA-------------TATGTGTCTGAAATNTGT--A--GTGTAGCATGTTATCCTT-GATATG-CCATGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATGT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAATTAAGGATACAGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA-T-ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGA
finalCons : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-GG----G-TTTAAAAATCNG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATT-CTTCAAAAAAC--CCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTGTTTTTTTTTG-------------------------------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GGCAACGGAC-TTTTTGTGT----NCTCTG---------TAATTGGTTCCAAT--TT---TTG-----GCACCGGACTTATTGTGT--TTATAA---------TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAACA---GGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATACC--ACTGACAATATTTATGTTTTAACA------------TATACTTA-TT--GAAGCCTTNATAAT-----AGCGATAAATAC----------ATGTATTACATGNAAT--------ATATAA--GCATGGATGATTTCAA-------------TATGTGTCTGAAATNTGT--A--GTGTAGCATGTTATCCTT-GATATG-CCATGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATGT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAATTAAGGATACAGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA-T-ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGA
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACTCTTGACGTGATACAGTCTTCTAGTGAATACTTGTTTAATTAATAAACAATTGCTATTAAAAAAAAAAACAATAAAGGAATCTTTTGTGAGGCCTGGAAGGTTGGACAAATTATTGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTGTGTGTGTTTGCCAAAATCAAAACAAATAAAAAGAAAACACTGAATATTCTTTTTGTAACATGCTATAGACTAGTGTACAAATATAACTGAATTTTGCCACAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATCATCCTGAAATCATAATATTCGAAGAATCATGATTGGTAAATAACAATTAATCAATAGTTGCGAACCGGAAAAGCTTCAAACGTCAGCTTCCTGAGAGGCCGTTAATCACATTAAGCGGTTTTCCAGGATCCTTCGCCGAATTTTATCGTCCCCCCTCCCACATCACACACCACATTTTTTGGGATACGCACCCCTGCCTAGTGTGTCCTGATGAGGTAGATTCGGAAAAGTATTTAACACGCAGTTAATTTTTCAATTTCAGTAAACCATGGGTTGGGGGGGGGGGGGGGTTACCAATCACACACAAGTTGTGGATGGTACAATCAAAGCAAGGGACCATTGAAACAGTTGGAGCAAAAGGGTGTTCGAGCTATCGAATTAAAAAGTACGTTCCAATCTGAGAAGGGACAACAAAATGGTATGCGAGAGACATTCATAGTGTTACGAAGTCATTGCAATTCGAGCCAATGAGCCTTCGTAATCCCATTGATTTCTGCATAATTTCAGAAACTGAAAATACATGTATTTCAGAGTAAAACGTCGAAAAACTAGGGGACTTTATTAAGTGTGTAATTTCGGCAAGTCGGTTTTTTGAAATTCAGAAAATCGGAAGAGGACTCAAGGCAATTGATATATAAAAA
Unaligned ( gi|8 ): ACAGTTTTCATGACATTTTGTGATTTAAAATATTTGAGTTAGCTGCTCGAGTTGAACAAGCGGACGTCACGCGACAATTAATTCAACAAAAGAGGGGATAAACTTTGTACAAAGTTATACTAGCTGCGATCTGTAGCGTTCATAACATGGTCAGACCAAAAAATATAAACCATAACGCTGCAGCTAACAATATACTGAGAGTGCACCAGGAGACGTGAAAAACTCTACCCTAAAAAAACCAAAAACAAAAACACAAAACACCCCCCCCCAACAAAAAAAAACCCCCACCACAAAACGAACCATAAAAAAACCACCAATTACTGTATACCCTAAATTATCTGCTGGGTACCAAAATGCATCCAAAAAAGTTACGGAGCTTTTATAAAAGTGAACTAAAATTCAACAGAAAATATAATGTAATGTTAACAACGAACTCCACCGGAAAGAACATGGACAAAGGGTTAATCCTTAATATCAATATAATATATTACGTTTATATATCATACCATAGGCGTTGGACTGTTTTTT
Unaligned ( gi|10 ): CCCTGCCTTATGTGTCTGGTGAAGGTAGATTTGGAAAAGTATTTAACACGCAGTTAATTTTCAATTTCAGATAAATCATGGTTGGGGGGGGGGTGTTACATCACATACAAGATGTGAATTGGTGTACAGTCAAACCAATGGACCATTGGAAACAGTTCGTGCTAGAGAGTACTCGAACTATCGAGGTTATAGTATGTTCCAATCGGAGAAGGAACAACAAAAATGGTTTGCGACATTCATGGTGTTCGAGCCATTGCACTTTCAAGCCAATGCATGAGCCATCGAAATCCCATTGTATTTCTGACATATATTCACATTGAAAATATTTTTTTAAATAGTCAAAAGTTAAACCTCGAAAACTAGGCGACCTTATTTTGTGTATTTCGGCAAAGTCGGTTTTGATATTCAGAAAATTCGGAGAGGGCTCAAGGCAATTGATATATA
Unaligned ( gi|16 ): CTTTTATAACATGCTATGGACTAGTGTACAATATTAACAGTGCACAATATTAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATATCCCCCTGGGATTATATTTCAAAAGAATCATAGTGTAAATACAATTAATCACATTTGGAAAATGCTTAATATAAGTTCCGTCCGGAAATGCTTCAATGTCAGCTTCTGGGAGG
Unaligned ( gi|19 ): TTTCATGATATTTTGTGAATTAAAAAATCTTGAGTAGCTGCTCGAAGTTGACAACGGACGCACAAATTAATTCAACGAAAAGAGGGGGTAACTTGTACAATATACTACTGCAGAGCTGTAGTGTTATGGTATTATAGCATGGTCAGACAAAAATATAAAAC
Unaligned ( gi|20 ): AAAATGAATCAAAAAAGTTACGAAGCTTTTAATAAGTGAACTAAAATCAGCAGAAATTATGTAAAGTTAACACGAAATCACCGGAAAACATGGACAAAGGTTAATACTTAATATTCAAT
Unaligned ( gi|21 ): AAGTTTCATGAAATATTGTGAATTAAAAATTATTGAGTAGCTGTTCGAAGTTGACAACGGATGCACAAATGAATTCAACGAAAAGAG
Unaligned ( gi|22 ): TGCCTACTGTGTCTGCTCAGAGGGCAAAATTGGAGAAATGTGTAACAAAAGTCAGTACATCTTAGTGATTGAATGTTT
Unaligned ( gi|23 ): TGCAAAGTTAGTACTAATATTGGATTGGCATATATACATAACA
Unaligned ( gi|24 ): AACAACAAGGAATCCTTTGATGAGGCCTGGTTAAGGTTGG
Unaligned ( gi|25 ): TAGCATGCCGGCCCTGATTTGCCAAGCTACGTTAGCA
Unaligned ( gi|26 ): ACATCACACACAAGTTGTGGATTGGTGCACA
Alignments
lowQualScore : 22222222222222 4444444444444444444444444444444444444444 111111 11111 222222 11111 222222222222 11 111 1111 33333 1111111 55555555555555555555555555555555555555555 1111 111 111 111 11111 88888888888888888888888888888888888888 111111 11111 1111 1 22222222222222 2222222222222222 111 1111 22222 1111 3333333333333 11 3333333333333 11 11 22222222 333333 111 1 1 1 3333 1 1 2222222 1 2222 2222 1 11 11 111 222222 1 333333 1 11 1
lowQualScore : 5 5 5 4 77777777777777 4 1111111111111111111111111111111111111111 0 222222 4 4 4 55555 4 22 4 0 6 1 4 333333 4 4 11111 777 55 4 4 55 4 4 1 777 4 99 55 55 99 000000000000 66 3 1 1 1 777 4 4 66 4 55 4 2 55 5 000 5 3 5 2222 5 5 6 33333 1 5 5 8888888 0 55555555555555555555555555555555555555555 99 4444 1 6 6 2 444 3 3 55 555 000 66666 2 3 00000000000000000000000000000000000000 3 7 99 6 666666 6 66666 7 3333 1 6 99 7 6 6 1 6 6 3 66666666666666 1 3 8888888888888888 777 8 1111 3 00000 8888 1111111111111 4 88 1111111111111 0 0 44 77 55 6 6 11 3 8 8 0 77777777 666666 777 0 0 0 2 0000 3 0 0 5555555 0 1111 1111 0 33 22 444 888888 0 111111 0 33 3 7
lowQualScore : . . . . .............. . ........................................ . ...... . . . ..... . .. . . . . . ...... . . ..... ... .. . . .. . . . ... . .. .. .. .. ............ .. . . . . ... . . .. . .. . . .. . ... . . . .... . . . ..... . . . ....... . ......................................... .. .... . . . . ... . . .. ... ... ..... . . ...................................... . . .. . ...... . ..... . .... . . .. . . . . . . . .............. . . ................ ... . .... . ..... .... ............. . .. ............. . . .. .. .. . . .. . . . . ........ ...... ... . . . . .... . . . ....... . .... .... . .. .. ... ...... . ...... . .. . .
lowQualScore : 0 0 0 4 22222222222222 4 6666666666666666666666666666666666666666 1 888888 4 4 4 77777 4 77 4 1 7 0 4 666666 4 4 11111 888 55 0 0 55 0 0 0 000 0 55 55 55 55 555555555555 33 6 0 7 7 222 4 4 11 4 33 8 9 99 7 000 7 0 7 1111 0 0 2 11111 4 0 0 6666666 7 77777777777777777777777777777777777777777 22 2222 0 7 7 5 333 3 7 00 000 000 77777 5 3 00000000000000000000000000000000000000 2 3 22 7 555555 7 77777 8 8888 0 7 22 5 7 7 3 7 7 7 33333333333333 7 2 9999999999999999 888 0 2222 8 00000 0000 3333333333333 2 33 4444444444444 1 1 99 99 77 7 7 00 8 0 0 8 22222222 555555 555 0 0 0 5 8888 2 0 0 0000000 0 2222 2222 0 88 55 888 888888 0 222222 0 88 3 3
consensus : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATCNG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATTCT-TC--A-AAAAA-CCCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GGCAACGGA-C-TTTTTGTGTCCTCTGTAATTGGTTCNAAT--TT---TTG-----GCACCGGACTNATTGTGT----------------TT-----A------T---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---NGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATA-CC--ACTGACAATATTTAT-----GT---TT----TAACA-TATACTTA-TT--GAAGCCTTNATAAT-----AGCGATAAATA--CATGTATTACA--TG--------TAATATATAA--GCATGGATGATTTCAA-------------TATGTGTCTGAAATNTGT--A--GTGTAGCATGTTATCCTT-GATATG-CCATGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATGT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAATTAAGGATACAGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA-T-ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGA
Reference ( family-1625 ) : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATCNG-ACCAGAGACACANTATG-GACCCT-----GGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ANC---G-TA--ATATC--CCA--TGG--GA------------TAGTATTTATATAACTAAATTTAC-C-AAAT-TTGGCCCACATTCT-TC--A-AAAAA-CCCTACACAAACTTGGAAAATAGAT-CG---AAT-TCGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTC---CACTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCAAATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTNTCGTAAACC-CTT-GGCAACGGA-C-TTTTTGTGTNCTCTGTAATTGGTTCCAAT--TT---TTG-----GCACCGGACTTATTGTGT----------------TT-----A------T---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---AGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTA-ATA-CC--ACTGACAATATTTAT-----GT---TT----TAACA-TATACTTA-TT--GAAGCCTTNATAAT-----AGCGATAAATA--CATGTATTACA--TG--------NAATATATAA--GCATGGATGATTTCAA-------------TATGTGTCTGAAATNTGT--A--GTGTAGCATGTTATCCTT-GATATG-CCATGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATGT---TTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAATTAAGGATACAGACT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-A--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA-T-ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGA
gi|1 : T-GATATGTCCAGGTGATGACAATGAAACATCAATACACACTTGTGTAATTTATA-TTATATAATTTCCCATTTCCTGTATTACAATTTTTTTTTGTGGATAAAAGGAATTTACATTAA------ATATAGACTATCTTTGTTACTTTTTGGTAAAAAGGAAAACTGAAACC-AATTGAACACATTTTA-GGGACATGTGGAAGTAAGG----TACAAGTACTTATTAAATGACTTTTTGGGAT----AGTT-ATTGATTTTTAACATGAATAA-CCG------GTAGCA--A-TAATCATGTTTACAAATATACTTAAACGCGATTTGTATCCTTGGATCATGTG-AAGA
gi|11 : CGGTGT-GGA-ATGGGGACG-GA-CT--T-----------TCCGT-G------------------TTATT-----------------TTACGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-GTG---G-TTTAAAAATCTG-ACCAGAGAAACAATTTA-GACTCT-----AGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACA-G--A-AT-ATC---G-T---ATATC--CCA--TGA--GA------------TAGTATT--TATAACTAAATTTAC-C-AAATATTCGCCCACATTCT-TC--A-AAAAA-ACCTACACAAACTTGAAAAA-AGAT-CG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACAATGATTATTCTTATT----CATTGT-CTG-TAATTTCGTTGTTACAAAATGTAATCTATCGCTTACTTACTAGTAAGTAATCGACTCAAAGATCAAATCATttattgccttatggccgtgtaagaatcttttagtgaatacttgttttaatattaataaacaaattgctattaaaaaacccataaaaaaggatcactttcgtgaaggcctggggaaggttgacgaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatgtgtattgataaatcaagaaacataataaaaagtaaatacactgaatatccattttgtaacaggctatagctgactagttttactgaacttttgccacagtagagtcttaataatattctaatgtggggacttcccaaagatgatcatatctgttcgttaatctcaaatgcatacatcgttatacacatttaaaatcatcctgagaccataatattttccggaaagaaacctaaaatcaaaaaaaataaatgtataataaattaattcacagttggcggcttggaaaagattcaacgtcagcttgggggccgtgttcccaaccagggccctggccctggatacccactggggcttttttaaagggcggttctcagacccattcgccgtaattttctcccccaacacaatttttggatccgcctcctgcctatagttttctgattgaaggttagagattcgggaaaagtatttataacacgcgttaattaaagaccatgggtctgggggggggggggggggaggggttacatctcacacaaaagtttgtggatatggtgtacagacaaagcacagggacacgttgaaaacaagttcgagcaaaaggtgtgttcgagcataatcgaagtaaggttcgttcccaatctgagaagagacaataaatatgggtttgcgacattcatagtgttggagtcatttgaattcgagcaaatgagccttcgacgattccatatcattgaatttctgacatatattcaaactgaaaatacaatgtatttcagagtaactgtttcaagaaggcgttgaataacggactaagggtgactcttattctactgtcgtataatagtcctggcaatatagtcggtcttctggagaatcagaaaattcgtgtgagatggggctccatatatagtctacgtataatagagtgtatatcgaaactatcacatacatttcattgacattttgtgtaattaaaatagactcttagtatgtgctatcggaagcttgacaatcgtgacgcacaaattaatttcaacgaaagagggtaacttgtacaatatactagctgcagatctgtagcgttatggtttttatagcatggtcagaaaaaataaaaaacccataacactgcagttctgcagcaacaataccactaggagtgcacagggacgtgaaaaactcaatcaaaaaaaaaaaaaaaaaaaaaaccaccaaacaccacaaaccccccccaaacaaacccacctcgcaacgattatcctacaacagctcgactcgaaaactacccaaaatttatcaattgtgtatcagaacccttatattcatacttatatgtaccgaaaatataataactattcacaatgaaattacgacgcgttctaaatgtggtgaacctccataatgtcagcttcaaattatgaaatactgaaatcaccggaaatatacatgatcagctggtgtgtaatccttatactcataatatattcgcgtccaatgtctcatcctagcgattggcgattgttttt
gi|12 : GTGT-GGA-ATGGGGATGTGA-CTACTAGTAACTAGTATCCGTGG------------------GTATTTTTTTTTTCTTTCTTTTTTGCGCGTTT-CAGACTACATGTAAGT-GTGCTCAGCAACGGAC-TTTTCGG-G---G-TTTAAAAATCGG-ACCAGAGACACATTATG-GACCCTAC---AGAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTCA--AAATCATTTT-CAAG-G--A-AC-ATC---GTTA--ATA-A--CCA--TGA--GA------------TAGTATT--TATAAC-AAATGTAC-CAAAAT-TTGGTCCAAATTCT-TC--A-AAAAA-CCCTACACAAACTTGGAAAAT-GAT-CG---AAT-TGGTC-AAATGCCGTCGATCACAT-TT-TTCTAAAAATACATCGATTATTCTTATTCA--CTCTGCTCTG-TAt
gi|13 : cCTGTAATTGGTTCAAAT--TT---TTG-----GCACCGGACTTATTGTG-----------------TT-----A------T---AATTATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATGGGTGTTGAACTGTTGGCCAAAGAGAAGAAAA--AATG-C-CATTAC-GATAGTATATTATTTA-GGTACGACTAATCGGACTATATACCC--ACTGACAATATTTAT-----GT---TT----TAGC--CATACTTATTT--GAAGCCTTAATAATAGTGCAGTGATAAATA--CATGCATTACA--TGTGAATATATAATATATAA--GCACGGATGATTTCAA-------------TATGTGTCTGAAAAATGTACA--GTGTAGCATGTTATCCTTGGATATG-at
gi|14 : TT--AAA-CATATT-C-CGTA--A-AA-ACC---G-TAC-AGGTCATCCA--TGG--GA-------------AGTAC--ATATGGTTACATTTAT-C-AAAA-TTGGCC-ACAT------------------CT---CAAACTTGAAAAA-AGAT-CG---AATGTCGTC-AA-TGCCG----TCATATGTT-TTCTAGAAATACAT--ATC-TTCCTATTGG--CACT-A-CTGGTATTTTCGTGGTAACAAA-TGCA-----TCGATAACTT-------AGTAG----------GATCAA-TCATACAT-CCTTG---------CC-----TTTCT-T--TGGGGGGG--------GGGGGTGGGGG----GATTCTTCGTAAACT-CGTAAACAACGGA-CTTTTTTATGTCCTCAGTACTTGGTTCCAAT--TT---T
gi|15 : CGGTGTTGGACATGGGGATG-GATCTA-T-----------TCC-T-G------------------TT--T-----------------TTGCGCGTTTTCAGAC------TAAGCAGTGCTCAGCAACGGACATTTTC-G-GAAGG-TTTAAAAATCCGGACCAAGAACACATTTTGTGACCCACAGAAGAAAAAAGATAAGAAGTACGTAGCCTAAGTCCTATTTTTC--AAATCATTTT-GACG-GGAA-AT-ACCAATG-TA--ATATC--CCACATGAAAGA------------TAGTAACT-TATAACTAAATGTAC---AAAT-TTAGCCCACATTCCCTT--ATAAAAA-CCCTACACAAACTTGGAAAA
gi|17 : aCGGTAC-GGA-ATGGGGACG-GA-CT--T-----------TTTGT-G------------------TTATT-----------------TTTCACGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-T----------------AAAAAT-----------A-ACAAAATG-AACGCG-----GGGGAAAGA-AATAAGT-CGTT-----AGTC---TTTTTC--AAACAATTTT-CACT-G--A-AT-AGC---G-TA--ATATC--CCA--TGG--GA------------TATTA--TATATGACAACATTAAT-C-AAAT-TTAGCCCACATTCT-TC--A-CAAAA-TC--ACGCAAACTT-GAAAATAatga
gi|18 : A-CT--T-----------TCCGT-G------------------TTACT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-GTG---G-TATAGAATTCTG-AC----------TTA----ACTCG-----GGAGAATGG-AAGAAGT-CGTT-----ATTC---TTTTTC--AAAACATTTT-CATG-G--A-AT-AGC---G-TA--ATATT--CGA--TGG--GG------------TAGTATT
gi|2 : ataatccttcttctttgatagggtggacaggttttTACA--TG--------CAATATATAA--GCATGGATGATTTTAA-------------TATGTGTCTGAAATATGT--ACAGTGTAGCATGTTATCCTT-GATATG-C-GTGTG--GACAATGAAACATCAATACACACT-GTGTA-TTTATAATTATNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATTTACATTAA----GGATACAGTCT---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAA-----------GCATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTATTAAATGACTTT----GAT----AGTT-ATTG--TTTTAACATG-AT-A-CCG------GTA-CA-TA---ATCATG-TTAC--ATATACTTAAACGAGA-TTGTATCCTTGGATCATGTGTAAGAaa
gi|3 : CGGTGT-GGA-ATGGCGATG-GA-CT--T-----------TCTGT-G------------------TTATT-----------------TTACGCG-------------------C-GTGCTCAGCAACGGAC-TTTTC-GTG---G-TTTAAAAATCTG-ACCAGAGAAACAATATG-GACTCTT----AAAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTC--AAATCATTTT-CACG-G--A-AT-ATC---G-TA--ATATC--CCT--TGA--GA------------TGGTATTTATA--ACC---TTTAT-C-AAAT-TTGGTAAACATTCT-TC--A-AAAAA-TCCTACACAAACTTAAAAAA-AGAT-CG---AAT-CCGTC-AAATGCCG----TCATGT-TT-TTCTAGAAATACATCGATTATTCTTACTC----ATTGA-CTG-TATTTTCGTTGTTACAAAATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAATATCAAATCATACATGCCTTGGTTTTTTTGTT-----TTTTTGT--T------GTTTTTTTTTAAAAT--GTTGACAGATTTATCGTAAACC-CTT-GGCAACGGA-C-TTTT--------------TTGGTTAAAA---TT---TTG-----GCACCAGACTGATTGGGTAATTTCTGCACCGGACTT-----ATTGTGTT---TA-TATGTATTATGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAAAACATTGTGGTTGAAC---AGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATA----TTA-GGTACGACTATTCGGACTT-ATA-CCCAACTGACAATATTTAT-----GT---TTTAAATAACATTATACTTA-TT--GAAGCCTTAATAAT-----AGCGATAAATA--CATGTATTACA--AG--------AAATATATAA--ACATGGATGATTTCAA-------------TGTG-----------TAC--A--GTGTAGCTTGTTCTCTCT-GATATG-CCATGTG--GACAAATAAACATCAAT--ACACT-GTGTA-TTTATAATTAT--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACT---TATG-TACTTTTT-GTAAAAAGG-AAACTGAAACC-AT-TGAACACATTTTATGGGA-ATGT-GAAGTA--GTACATACAAG-ACTTATTAAATGATTTT----GATTTTGATTTGATGA--TTTCAATAT--AT-GTCTGAAATGTGTA-CAGTG-T-AGCATG-TTAT--Aacggaaagtacatgtatatatactttggcgtgtactgtcttctagtgaatacttgttttacattaataaacaaattgctattaaacaaccaaaaaagaatcctttggtgaaggtctgggaaggttggacaaatttatttatgtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatatgtattgcaaaatcaaaacataataaaaagaaatacactgcatatattttgtaacatgctatagactagtgcatgtacaatattaactgaactgtacttacagtaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaatcatccgagatcataatattcggaaagaatcataatgtaaatacaattaattacagttgcggccggaaaagtttcaacgtcagcttctgggaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaatttcgtccctccaacaaaattttttggatccgcccctgcctagtgtgtctgatgaaggtagatttgaaaatgtatttaacagtcacgtgcatcttattgttcgaatgtttcagataaaccatgggttgggtgggtacatcacacacaagttgcggattggtgtacagtcaaagcaagggaccattgaaaacagttggagcaaaagggtgttcgagctatcgaagttaaagtacgtttcaatctgagaagggacaataaaaatggtttccgacattcatagtgttggagtcattgcaatt
gi|3 : GATGATTTCAA-------------TATATGTCTGAAATGTGT--ACAGTGTAGCATGTTATAATT-GATATG-CCATGTG--GACAATGAAACATCAATGCACACG-GTGTA-TTTATAATTGTGT---attgatatgccatgtggacaatgaaacatcaatgcacacggtgtatttataattgtgtcat
gi|4 : cggtgtggaatggcgatggactttctgtgttattttacgcgcgtgctcagcaacggacttttcgtggtttaaaaatctgaccagagaaacaatatggactcttaaagaaagaaagaagtcgtaagtctttttcaaatcattttcacggaatatcgtaatatcccttgagatggtatttataacctttatcaaatttggtaaacattcttcaaaaaatcctacacaaacttaaaaaaagatcgaatccgtcaaatgccgtcatgtttttctagaaatacatcgattattcttactcattgactgtattttcgttgttacaaaatgtaatctatcgcttacttagtaatcgactcaaatatcaaatcatacatgccttggtttttttgtttttttgttgtttttttttaaaatgttgacagatttatcgtaaacccttggcaacggacttttttggttaaaattttggcaccagactgattgggtaatttctgcaccggacttattgtgtttatatgtattatgtattgcatttagaatcaagagaaagaaaacattgtggttgaacaggccaaagagaagaaaaatgaccattacgatagtatattaggtacgactattcggacttatacccaactgacaatatttatgttttaaataacattatacttattgaagccttaataatagcgataaatacatgtattacaagaaatatataaacatggatgatttcaatgtgtacagtgtagcttgttctctctgatatgccatgtggacaaataaacatcaatacactgtgtatttataattatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngacttatgtactttttgtaaaaaggaaactgaaaccattgaacacattttatgggaatgtgaagtagtacatacaagacttattaaatgattttgattttgatttCGGTGT-GGA-ATGGGGACG-GA-CT--C-----------TCCGT-GG-----------------TTTTT-----------------TTGCGCGTTTCCAGAC------TAAGC-GTGCTCAGCAACGGAC-TTTTC-G-G---G-TTTAAAAATTGG-ACCAGAGACACATTATG-GACCCT-----ACAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTATC--AAATCATTTT-TACG-G--A-AT-ATC---G-TA--ATGTC--CCA--TGA--GA------------TAGTATTTATATAACTAAATGTAC-C-AAAT-TTGGCCCACATTCT-TCAAA-AAAAA-CCCT--ACAAACTTGGAAAATAAAT-AGTACAAT-TTGTC-AAATGCCG----TCACGT-TT-TTCTAGAAATACATCGATTATTCTTATTCTGACACTGA-CTG-TATTTTCGTTGTTAAAAGATGTAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCCTTG---------TT-----TTTTT-T--T------G--------GAAAAT--GTT----GATTTATCGTAAACC-CTT-GGCAACGGATT-TTTTTGTGTGCTCTGTAATTGGTTCAAAT--TT---TTG-----GCACCGGACTATTTGTGT----------------TT-----A------T---AA-TATGTATTTTGT--A-TTGCATT---TA-GAATCAAGAGAA-----AGAATACATTGTGGTTGAAC---TGGCCAAAGAGAAG-AAA--AATGAC-CATTAC-GATAGTATATTATTTA-AGTACGACTAATCGGACTA-ATA-CCCAACTGACAATATTTGTTTTAACT---TT----TAACA-TATACTTA-TT--G----------AAT-----AGCGATAAATACGCATGCATTACA--TG--------CA--ATATAA--GGATGGATGATTTCAA-------------TATGTGTCTGAAAAATGT--A--GTGTAGCATGTTATCCTT-GACATG-CCATGTG--GACAATGAAACACCAATACACACT-GTGTA-TTTATAATTATNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATTTGCATTAATTAAGAATGCTGACC---TTTG-TACTTTTT-GTAAAAAGG-AAACTGAAACCAA--TGAACACATTTTATGGGA-ATGT-GAAGTA--G----TACAAG-ACTTACTAAATGACTTT----GAT----AGTT-ATTG--TTATAACATG-AT-A-CCG------GTA-CA-TATT-ATCATG-TTAC--ATATACTTGAACGAGA-TTGTATCCTTGGATCAAGTGTAAGAcat
gi|6 : CGGTGG-GGA-ATGGAGACG-GA-CT--T-----------CCTGT-G------------------TTATT-----------------TTCCGCGTTACCAGAA------TAAGC-GTACTCAGCAACGGAC-TT----G-A---A-TTT-------TG-ACTGGAGTAATAAAATG-GACTCG-----GGAGAAAGA-CAGAAGT-CTTT-----AGTC---TTTTGA--AAAT-ATTAT-CAAG-A--C-TT-AGA---A-TA--ATATC--CCA--TGG--GA------------TAGAATTTATA--ACTACATTTAT-C-AAAT-TTGAACCACATTCT-TC--A-AAAAT-TCTTACACAAACTTGACACAAAGAT-CG---AAT-TCGGT-AAATGCCG----TCATGT-TT-TTCTAGAAATTTATCGATTCTCCTTATT----CACTTA-CTG-TATTTTCATGGTTACAAAATGTAATCTATAACTTTCTT-------AGCAATCGACTGAAAGATCAAATCATATATGCCTTG---------TTGTTGATTTTT-TTAT------G--------GAAAAT--GTT----GATATCTCATAAACCTTTT-GACAACGTA-C-TGTTTGTGTCCTCAGTAATTGGTTCCAAT--TT---TTG-----GCACCGGACTGATTGAGTCA--------------TTTCTGCA------TCGAAA-T---TATTTTGTTGATTTGTATTATGTATTAATGAAGAGAA-----AGAAAACTCTGTAACTGAAC---AGACCAAAGAGAAG-AAA--AA-GTCATATCAT-GAAAGTACTTTA--TA-G---CAA-TATTTG----------------TG----TGTTTAC-----ATACATG----TAATA---TACTTA-TTTAAAAGCCTTCATAAT-----GATGATAAATA--T-TATATGAAAGGCG--------TAGTACGTAATTGTATGGGCGATTTCAA-------------T-TTCATCTGAAATTTGT--A--
gi|7 : ttca-GGA-ATGGGGACG-GA-CT--A-----------TCCGT-GGTTTTTTTTGTTGGATTTTTTTT-----------------TTGCGCGTTTCCAGAC------TAATC-GTGCTCAGCAACGGAC-TTTTC-G-G---GATTTAAAAATCGG-ACCAGAGACACATTATG-GACCCT-----ACAGAAAGA-AAGAAGT-CGTA-----AGTC---TTTTTCAAAAATCATTTTCCACG-G--ATATAAAC---G-TAGTATATC--CCA--TGGA-GATAGACTAAATACTAGTATTTATACA--TAAATGTACGA-AAAT-TTGGCGCACATTCT-TC--A-AAAAAGCCCTTAACAAACTT-GAAGAT-GATGCG---AAT-T-GTCAAAATGCCG----TCACGT-TT-TTGTAGAAATGCATCGATTATTCTTATT----CACTGA-CTG-TATTTTCTTTGTTAAAAGATATAATCTATCGCTTACTT-------AGTAATCGACTCAAAGATCATATCATACATGCCTTG---------TT-----TTTTT-T-------------------AAAAT--GTT----GATCTATCGTAAACC-CTT-GG-AACGAA---TTTTTGTGTGCTCTGTCATTGGTT--AA--------TTG-----GCATCGGA--TATTGTGT----------------TT-----A------A---AA-TATG--TTTTGT--A-TTGCGTT---T--GACT-------------------CTTTGTGGTTGAAC---AG--CAACGAGAAG-AAAAGAGTGAC-CATTACGGATAGT-TATTATTTAGGGCACGA-TAATCGTACTA-ATA-CC--ACTGAC-ATA-TTAT-----GT---acagttg
gi|9 : T-TTATTCTAGTAATACATCGATT---CTTATTC----ACCAA-CTG-TATTTTCGTTGTTACAAAATGTAAACTATAACTTACTT-------AGCAATCGACTGAAACATCAAATCATACATGTC---------------------TTT-A--G------G--------GGGGGG--GGT----GACTTCTCCTAAACC-TTT-GAAAACGGA-C-TTTTTGTGCCCTat
gi|9 : AATTGGTTCCAACGATTAGGTTATATCTGCACCGGAATTATCTTGG----------------TC-----A------T--------TG------GT--A-T--CAT--------AATGAAGAGAATTGAAAGAAAAC--TCTGGCTGAA----GGGCCAAAGAGAAG-AAA--AATTCC-GATCAT-AATAGTACATTA-----GGTAAGAC------------ACA-------TGGTAATATTTGT-----TT---GT----TCACA-AATACTTA-TT--AGGGTCTTTATAAT-----GATGATAAATA--T-TATATGAAATGTG--------TGGTACGTAATTATATGGGTGATATAAATCCTGTAAAGATGTATGTGTCTGAAATTTGT--A--nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattggttccaacgattaggttatatctgcaccggaattatcttggtcattggtatcataatgaagagaattgaaagaaaactctggctgaagggccaaagagaagaaaaattccgatcataatagtacattaggtaagacacatggtaatatttgtttgttcacaaatacttattagggtctttataatgatgataaatattatatgaaatgtgtggtacgtaattatatgggtgatataaatcctgtaaagatgtatgtgtctgaaatttgtaacagttga
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): ATACTCTTGACGTGATACAGTCTTCTAGTGAATACTTGTTTAATTAATAAACAATTGCTATTAAAAAAAAAAACAATAAAGGAATCTTTTGTGAGGCCTGGAAGGTTGGACAAATTATTGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTGTGTGTGTTTGCCAAAATCAAAACAAATAAAAAGAAAACACTGAATATTCTTTTTGTAACATGCTATAGACTAGTGTACAAATATAACTGAATTTTGCCACAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATCATCCTGAAATCATAATATTCGAAGAATCATGATTGGTAAATAACAATTAATCAATAGTTGCGAACCGGAAAAGCTTCAAACGTCAGCTTCCTGAGAGGCCGTTAATCACATTAAGCGGTTTTCCAGGATCCTTCGCCGAATTTTATCGTCCCCCCTCCCACATCACACACCACATTTTTTGGGATACGCACCCCTGCCTAGTGTGTCCTGATGAGGTAGATTCGGAAAAGTATTTAACACGCAGTTAATTTTTCAATTTCAGTAAACCATGGGTTGGGGGGGGGGGGGGGTTACCAATCACACACAAGTTGTGGATGGTACAATCAAAGCAAGGGACCATTGAAACAGTTGGAGCAAAAGGGTGTTCGAGCTATCGAATTAAAAAGTACGTTCCAATCTGAGAAGGGACAACAAAATGGTATGCGAGAGACATTCATAGTGTTACGAAGTCATTGCAATTCGAGCCAATGAGCCTTCGTAATCCCATTGATTTCTGCATAATTTCAGAAACTGAAAATACATGTATTTCAGAGTAAAACGTCGAAAAACTAGGGGACTTTATTAAGTGTGTAATTTCGGCAAGTCGGTTTTTTGAAATTCAGAAAATCGGAAGAGGACTCAAGGCAATTGATATATAAAAA
Unaligned ( gi|8 ): ACAGTTTTCATGACATTTTGTGATTTAAAATATTTGAGTTAGCTGCTCGAGTTGAACAAGCGGACGTCACGCGACAATTAATTCAACAAAAGAGGGGATAAACTTTGTACAAAGTTATACTAGCTGCGATCTGTAGCGTTCATAACATGGTCAGACCAAAAAATATAAACCATAACGCTGCAGCTAACAATATACTGAGAGTGCACCAGGAGACGTGAAAAACTCTACCCTAAAAAAACCAAAAACAAAAACACAAAACACCCCCCCCCAACAAAAAAAAACCCCCACCACAAAACGAACCATAAAAAAACCACCAATTACTGTATACCCTAAATTATCTGCTGGGTACCAAAATGCATCCAAAAAAGTTACGGAGCTTTTATAAAAGTGAACTAAAATTCAACAGAAAATATAATGTAATGTTAACAACGAACTCCACCGGAAAGAACATGGACAAAGGGTTAATCCTTAATATCAATATAATATATTACGTTTATATATCATACCATAGGCGTTGGACTGTTTTTT
Unaligned ( gi|10 ): CCCTGCCTTATGTGTCTGGTGAAGGTAGATTTGGAAAAGTATTTAACACGCAGTTAATTTTCAATTTCAGATAAATCATGGTTGGGGGGGGGGTGTTACATCACATACAAGATGTGAATTGGTGTACAGTCAAACCAATGGACCATTGGAAACAGTTCGTGCTAGAGAGTACTCGAACTATCGAGGTTATAGTATGTTCCAATCGGAGAAGGAACAACAAAAATGGTTTGCGACATTCATGGTGTTCGAGCCATTGCACTTTCAAGCCAATGCATGAGCCATCGAAATCCCATTGTATTTCTGACATATATTCACATTGAAAATATTTTTTTAAATAGTCAAAAGTTAAACCTCGAAAACTAGGCGACCTTATTTTGTGTATTTCGGCAAAGTCGGTTTTGATATTCAGAAAATTCGGAGAGGGCTCAAGGCAATTGATATATA
Unaligned ( gi|16 ): CTTTTATAACATGCTATGGACTAGTGTACAATATTAACAGTGCACAATATTAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATATCCCCCTGGGATTATATTTCAAAAGAATCATAGTGTAAATACAATTAATCACATTTGGAAAATGCTTAATATAAGTTCCGTCCGGAAATGCTTCAATGTCAGCTTCTGGGAGG
Unaligned ( gi|19 ): TTTCATGATATTTTGTGAATTAAAAAATCTTGAGTAGCTGCTCGAAGTTGACAACGGACGCACAAATTAATTCAACGAAAAGAGGGGGTAACTTGTACAATATACTACTGCAGAGCTGTAGTGTTATGGTATTATAGCATGGTCAGACAAAAATATAAAAC
Unaligned ( gi|20 ): AAAATGAATCAAAAAAGTTACGAAGCTTTTAATAAGTGAACTAAAATCAGCAGAAATTATGTAAAGTTAACACGAAATCACCGGAAAACATGGACAAAGGTTAATACTTAATATTCAAT
Unaligned ( gi|21 ): AAGTTTCATGAAATATTGTGAATTAAAAATTATTGAGTAGCTGTTCGAAGTTGACAACGGATGCACAAATGAATTCAACGAAAAGAG
Unaligned ( gi|22 ): TGCCTACTGTGTCTGCTCAGAGGGCAAAATTGGAGAAATGTGTAACAAAAGTCAGTACATCTTAGTGATTGAATGTTT
Unaligned ( gi|23 ): TGCAAAGTTAGTACTAATATTGGATTGGCATATATACATAACA
Unaligned ( gi|24 ): AACAACAAGGAATCCTTTGATGAGGCCTGGTTAAGGTTGG
Unaligned ( gi|25 ): TAGCATGCCGGCCCTGATTTGCCAAGCTACGTTAGCA
Unaligned ( gi|26 ): ACATCACACACAAGTTGTGGATTGGTGCACA