lowQualScore : 111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 8888 11111 2222 1 777777777777777777777777777777777777777777777777 1 11111 111111 11111 555555555555555555 111111 11111 111 1111111 111111 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 11111 333333333333333333333333333333333333333 11 1111111111111 111 33333333333 111111 1111 11111111111 22222222 111111 222222222222222222 55555555555555555555555555 1 11 1111 1111 999999999999 1111 333 111111 6666666666666666666666666666666666666666666666666666666666666666666666666666 444444444444444444444444444444444444444444444 1111111111 333333333333333333333 1111 33333333333333333 111 22222222222222222 44444444444444444444 111 11 11111111 22222 111111 111 11111111 3333333333333 111 111111 88888888888888888888888888888888 11111 1 22 11 111 11 22222 2222222 5555555555 11
lowQualScore : 5 5555 6 6 66 5 9 5 22222 5 77 4444 1 111111111111111111111111111111111111111111111111 1 66 1 0 66666 4 4 111111 3 22222 222222222222222222 1 5 222222 9999 11111 66 9999 555 5555555 4 3 3 3 7 3 7 77 999999 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 22222 666666666666666666666666666666666666666 4 777 8 6666 44 4444444444444 444 11111111111 555555 3 3 3 0000 3 3 6 55555555555 7 44 99999999 4 55 77 999999 000000000000000000 0 66666666666666666666666666 7 0 00 3 7777 0 8888 8 555555555555 7 888888 5 5555 111 6 1 444444 0000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 000000000000000000000000000000000000000000000 4 2222222222 55 333333333333333333333 5 2 2 1111 2 5 2 5 2 22222222222222222 55 555 44 11111111111111111 1 5 88888888888888888888 6 222 00 55 11111111 999 99 99999 3 888888 555 2 3 11111111 1 66 6666666666666 4 4 8 4 999 4 4 000 0 222222 33333333333333333333333333333333 8 44444 3 4 33 22 555 88 3 88888 6 44 33 3 44444 3 5 6666666 8 8 4 8 5 0 3333333333 2 2 2 2 66
lowQualScore : . .... . . .. . . . ..... . .. .... . ................................................ . .. . . ..... . . ...... . ..... .................. . . ...... .... ..... .. .... ... ....... . . . . . . . .. ...... ................................................................................................... . ..... ....................................... . ... . .... .. ............. ... ........... ...... . . . .... . . . ........... . .. ........ . .. .. ...... .................. . .......................... . . .. . .... . .... . ............ . ...... . .... ... . . ...... ............................................................................ . . ............................................. . .......... .. ..................... . . . .... . . . . . ................. .. ... .. ................. . . .................... . ... .. .. ........ ... .. ..... . ...... ... . . ........ . .. ............. . . . . ... . . ... . ...... ................................ . ..... . . .. .. ... .. . ..... . .. .. . ..... . . ....... . . . . . . .......... . . . . ..
lowQualScore : 0 0000 0 0 66 0 6 0 22222 0 11 3333 4 222222222222222222222222222222222222222222222222 8 88 7 0 00000 0 0 555555 4 55555 111111111111111111 5 0 888888 1111 11111 11 4444 222 6666666 3 6 3 3 3 6 3 11 333333 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 77777 888888888888888888888888888888888888888 4 000 9 3333 55 6666666666666 000 99999999999 888888 5 6 3 4444 3 3 7 88888888888 3 22 99999999 4 88 33 444444 444444444444444444 8 55555555555555555555555555 3 0 22 2 5555 8 2222 0 888888888888 6 333333 7 1111 555 7 7 111111 3333333333333333333333333333333333333333333333333333333333333333333333333333 0 0 333333333333333333333333333333333333333333333 0 1111111111 55 000000000000000000000 3 9 9 8888 9 7 9 7 9 33333333333333333 00 666 88 55555555555555555 9 2 66666666666666666666 2 222 88 22 11111111 666 22 88888 7 888888 888 5 2 77777777 1 11 0000000000000 4 4 9 4 999 0 0 000 8 888888 22222222222222222222222222222222 9 00000 2 0 22 22 000 99 6 33333 7 66 22 3 11111 1 2 0000000 0 0 0 0 8 6 2222222222 5 5 5 5 55
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCATATCAAGATATCTAAGGCCCGCAG-GCCTNAT-GG-C-T-CAC-CTGTAC-GGAC----GATTT-TAATTTTAGCAATTG-GATAATCTCN---ACTC------------GAAGACATCTNGTTAAGAC-ATAT--NGAACAAAA-G-TTG------TTTA-G--TTTTACN-A-----G--N---TCTAT-CTA------AC---CGTA-----TC--AAG----ATAN--AGGCCCG-C-GGGCCTCA-TGG-C-T-C-AC-CTGTAC-GGAC----G-ATTTAGNNTT---CAAT------A------TTTATAACTCGCTA----CTC-G-AAA-ATATT----TTG-----T--TAA---GAAGTATA----TT--A--CAAAA-G-----TTGTTTA--------G--TT---TTA-----CNA--------GA-T-C-TAT-C-T--AACCGTAT----C--------AA--GATAT--AG-----GCCCA-C-GG-GCCTCA-TGG-C----T-C-AC-CTG-TA-------CG-GACG-ATTT-A---G--TG-TCGCT-ATT-CATAA-----ATCTTTA----CTCGA-AG-ATA-TTTTGT--TAAGA-CN---TGTTT----AG--TTTTACTA-GATC-TATCT--AACCGTATCAAGATAT--A-GG-CCATGCAGTG-GCGGGCCTCATGG-C--T-CA-C-CTGTAC-G-G-ATGATTT--G-G-TGT---------TG----CNATTT--ATAA--CTTT--T-CTCGAAA-ANATTTTGT--TAA-AACATNTAT----A--C-AAAAG-TTGTTTA-G--TTTN-CCG-------AGAT-CT-AT-CTA------ACCG-TA-----T----C--AAGA--TAA---A--GGCCC-C--CGGGCCTCAT-GG-C----T-C-A-C-C-TGTA----C-AG-A----N--GATT--T-A-GTG-TC----G-CNA----TT-CATAANT--TTNTA----CTCGN-TG-ACATTC--TGA-TAA-GA--C-AT-ATT--GAACA--AA----NGTGAANTTTCACGNGATCTAT-CNAACCGTATCATA-A-----AGGCCT--GCAG---GCCTAN--TGGC-T-C-A-C-C-TGTAC-AG-A-C-GAT------TTA---------AAT---AGT-------------GTT-GCAATT-G-ATAATTTTTTACTCG-TTGATAT-TCTG---TTAN-G-A-----C-A--T-NTTGA-ACT-ANAAGT-TGTTTAATTTCGC-------G-AGA-TCTATNTT-ACGNTATAAAAAGTATCGGNNTGCGCNCNTNATNGCTCACNTACACAGACAAA
Reference ( gi|1 ) : GACCCACGATTGATGATCAATGCTTTTCATTTTGATGTTGTTCAATTGAAACCTTGGGATATTGTTAATCATCAAGTGTCAGAGTGAGAACCCTATC----TGTCCAAGGCCCACAG-GCCTCAT-GG-C-T-CAC-CTGTAC-GGAT----GATTT-TAA-------AA--G-G----TCTTT---ACTC------------AAAAGCATTTTGTTAAGAC-ATAT--AAAACAAAA-G-TTG------TTTA-G--TTTCACT-A-----G--T---TTTAT-CTA------AC---TGTA-----TC--AAG----ATAA--AGGCCCA-C-GAGCCTCA-TGG-C-T-C-AC-CTGTAT-GGAC----A-ATTTAGGGT----CAAT------A------TTTATAACTCGCTA----CTT-G-AAA-ACATT----TTG-----T--TAA---AAAATATA----TT--A--CAAAA-G-----TTGCTTA--------G--TT---TTA-----CTA--------GA-T-C-TAT-C-T--AACAGTAT----C--------AA--TATAT--AG-----GTCCA-T-GG-GCCTCA-TGG-C----T-C-AC-CTT-TA-------CA-GACA-ATTT-A---T--TG-TTGCT-ATT-CATAA-----ATCTTTA----CACGA-AA-ACA-TTTTGT--TGAGA-CT---TGTTT----AG--TTTTACTA-GATC-TATAT--AACTGTATCAAGATAT--A-GG-CCATGCAGTGGGCGGGCCTCATGG-C--T-CA-C-CAGTAC-T-G-ATGATTT--A-A-TGT---------TA----CTATTT--ATAA--CTCTAATGCTTGAAA-ACATTTTAT--TAA-AACATTTATT---A--C-AAAAG-TCGTTTA-G--TTTT-CCA-------AAAT-CG-AT-CTG------ACCG-TA-----T----C--AAGA--TGA---A--GACTC-C--CGGGCCTCAT-GG-C----T-C-A-C-C-TGTA----T-GG-A----A--GATT--T-A-GTG-TC----A-CTA----TT-CATAAAT--CCGTA----CTTGA-AA-ACATTT--TGA-TAA-GA--C-AC-ATT--AAACA--AA----TGTGAACTTTTATGAGATCTAT-TTAACGGTATCATG-A-----AGGCCT--GCAA---ACTTTT--TGGC-T-C-A-C-T-TGTAC-AG-A-C-GAT------TTA---------AAT---AGC-------------ATT-GCAAGT-G-ATAATTTTTTACTCG-TAAATAT-TCTG---TTAA-G-A-----C-A--T-ATTGA-AC--ATAAGT-TGTTTAATTTTAC-------G-AGA-TCTATATT-ACGTTATAAAAAATATCTGCCCACACGCCTCATGGCTCATATACACAGACAAAAACCTCAAGAATGTTACCTGCAACCCTGATGCCTTCTGATTTTT
gi|22 : AACCATATCAAGATATCTAGG--CCACAGTGCCTCAT-GG-C-G-CAC-CAGT
gi|5 : AAGGCCTGCAA-CTCTTAT-GG-T-T-CAC-CTGTAC-AGAC----GATT
gi|10 : aaAAGGCCTGCAG-GCCT-AT-GG-C-T-CACTCTGTACAGGAT----GATTT-aagtattacaaatataaaatggcgaagtaacaaagtatgaaaactgataaatttttactcgtaaatgatctgttaaaggatattgaacacatgttgttcaatttagcgagatttttttttgcgatatatg
gi|12 : taAAGGCT-GCAG-GCCTAAT-GG---T-CAC-CTTGAC-AGAT----GATTT-agtgttgcaattgataattttttactcgttgatatttgttaggaacccccattttttgaactatagcttgctttat
gi|9 : gtaAAGGCCTGCAG-GCCTAAT-TG-C-TCCAC-CTGTAC-AGATCGTAAATTT-CAGTTTTAGCAATTG-GATAATTTCA---ACTC------------GTTGATATCTGATTAAGACGATCT--TGAACAAAA-G-TTG------TTagtgttgcaattgataatttactcgattgatagtctgttatgacatgattgaacttattagttgttgta
gi|8 : ataAAGGCCTGCAG-GCCTAAT-TG-C-TCCAC-CTGTAC-AGATCGTAAATTT-CAGTTTTAGCAATTG-GATAATTTCA---ACTC------------GTTGATATCTGATTAAGACGATCT--TGAACAAAA-G-TTG------TTata
gi|2 : ataGGCCTAT---GCCTTATTGG-CGT-CAC-CTGTAC-AGAC----AGATT-TAA-------Aata
gi|3 : attcaattattttttatgataaaaaatatataaaacaaaagttgtaaagtttaccagatgtttcgaacgataataatagttgCCATGG-GCCTCAT-GATC-T-CAC-CTGT-C-GGAC----ACTTTCTGA-------TA--TCG----TCTTTCGTACTCTTTACCCCCCCGAAAGACATTTTGTTAA-AC-ATATTCGAACCAAAA-G-TTT------TTGA-G---TTAACTGA-----G-------CGAG-CTAGAGGATAC---TATACGAACTC--AAG----ATAG--AGACCCACC-AAGCC-CA-TGC-C-T-C-CCACTGTAtctcgctattccttcgtaaattattgtccttggacattcaatataaaatatatcttttatggaaataattttgtataaaccgtatattttaaaagtttaccatgatattatcgaaccatatcaagaaattgaccattgggctttatggctttctttatacgagatttgtatatcgctattcctttgcctaattctgtgattttaagggcatttt
gi|4 : acaaaaatcttttacgtttaccaaaatcttctgtaacatatttctcaagaaattATTTATAA-------A----------TCTCT---ACTC------------GAA----------TA-GAT-ATGT--AA--CAAAA-GCTTG------TT-A-GGATTTTACT-T-----GA-T---CCTAT-CTA------AC---TGTA-----TC--AAG----ATAT--GGGTCCA-TGGGGCCCCA-TGG-C-caacgat
gi|16 : ctcgaccttaatgaccaatttaacattaatacttAAAACATTTTGATAAGAC-ACAT--TGAACAAAACG-TTGGGAATTTTTA----TTTTA----------------TCTAT-CTA------AG---CGTA-----TC--Aagcgtgcaccttgtagcgttagcaaacgattttgtgtttgctattacaaaaatcatatctttac
gi|19 : TTAAAAC-GAAT--ATCACAAAA-G-TTG-------TTA-G--TTTTCCA-A-----A--A---TTGAT-CTA------AC---CGAA-----TC--AAta
gi|2 : aaAAAAT-ATAT--AAAACAAAA-G-TTG------TAAA-G--TTT-ACC-A-----G--A---TGTTT-CGA------AC---GATA---------ATA----ATAGTTGGGCCTA-T---GCCTTATTGG-CGT-C-AC-CTGTAC-AGAC----AGATTTA---------AAT--------------------CTCGCTATTC-CTTCGTAAA-TTATTGTCCTTGGACATT--CAATATAAAATATATCTTTT--A--TGGAA-ATAATTTTGTATAAACCGTATA--TT---TTA-----AAA--------G--T-T-TAC-CAT--GATATTAT----C--------GAACCATATCAAGAAATTGACCATT-GG-GCTTTA-TGG-C----T-T--T-CTT-TA-------TACGA-G-ATTT-G---TA-TA-TCGCT-ATT-C
gi|7 : attcaattattttttatgataaC-ATAT--TTAGCAGAA-G-TTG------CTTA-A--ATCTACT-ACATTTG--TAGATTTAT-CTA------AC---TGTA-----TC--AAG----ATAT--AAGCTTG-T-GCGCCTCA-TTG-C-T-C-AC-GTACAT-GAAT----G-AGTTGGTGT----CGCT------A------TTctttgcctaattctgtgattttaagggcatttt
gi|3 : gataaaggttttatACAAAA-A-TCT------TTTACG--TTT-ACC-A-----AAAT---CTTCT-GTA------ACATATTTC-----TC--AAG----A-----AATTCCA-T-GGGCCTCA-TGATC-T-C-AC-CTGT-C-GGAC----A-CTTT----C----TGAT------ATCGTCTTTCGT-ACTCTTTACCCCCCC-G-AAAGACATT----TTG-----T--T------AAACATA----TTCGAACCAAAA-G-----TTTTTGA--------G--TTAACTGAGCGAGCTAGAG-----GA-TAC-TATAC-G--AAC----T----C--------AA--GATAG--AG-----ACCCACC-AA-GCC-CA-TGC-C----T-C-CCACTG-TA-------CA--ACG-ATc
gi|14 : CAGAA-G-TTA------ATTA-A--TTTCGCG-A-----G--A---TCTATGTTA------AC---GGTA-----TCCAAAGCGGAATAC--A--CCCA-T-GA-------TGG-C-T-C-AC-CTACAC-AGAC----A-A
gi|22 : A------AC---CATA-----TC--AAG----ATATCTAGGCC-A-CAGTGCCTCA-TGG-C-G-C-AC-CAGTa
gi|9 : ----ATAA--AGGCCTG-C-AGGCCTAA-TTG-C-TCC-AC-CTGTAC-AGATCGTAA-ATTTCAGTTTTAGCAATTGGATAA------TTT-CAACTCG--------TT-G-----ATATC----TGA-----T--TAA---GACG-ATC----TTGAA--CAAAA-G-----TTGTT
gi|8 : ----ATAA--AGGCCTG-C-AGGCCTAA-TTG-C-TCC-AC-CTGTAC-AGATCGTAA-ATTTCAGTTTTAGCAATTGGATAA------TTT-CAACTCG--------TT-G-----ATATC----TGA-----T--TAA---GACG-ATC----TTGAA--CAAAA-G-----TTGTTata
gi|10 : TAA--AGGCCTG-C-AGGCCT-A-TGG-C-T-C-ACTCTGTACAGGAT----G-ATTTAGTGTTG--CA--------A------TTGATAATTTTTTA----CTC-G-TTG-ATA-T----TTG-----T--TAG---GAAata
gi|5 : AA--AGGCCTG-C-AACTCTTA-TGG-T-T-C-AC-CTGTAC-AGAC----G-ATTAAGcccccattttttgaactatagcttgctttat
gi|4 : a-C-T-CGAC-CTTAAT-GACC----A-ATTTAACAT----TAAT------ACTTA--TTTATAAATCTCTA----CTC-G-AA----------------------TAG---A---TATG----TA--A--CAAAA-GC----TTG-TTA--------GGATT---TTA-----CTT--------GA-T-CCTAT-C-T--AACTGTAT----C--------AA--GATAT--GG-----GTCCA-TGGG-GCCCCA-TGG-CAGCGTGC-AC-CTTGTAGCGTTAGCA-AACG-ATTT-T---G--TGTTTGCT-ATTACAAAAATCATATCTTTA----Ctattacaaatataaaatggcgaagtaacaaagtatgaaaactgataaatttttactcgtaaatgatctgttaaaggatattgaacacatgttgttcaatttagcgagatttttttttgcgatatatg
gi|16 : -AAA-ACATT----TTG-----A--TAA---GA--CACA----TTGAA--CAAAACG-----TTGGGAA--------T--TT---TTA-----TTT--------TA-T-C-TAT-C-T--AAGCGTAT----C--------A
gi|2 : TT----TTA-----TGATAA---AAAATATA----TA--AAACAAAA-G-----TTG-TAA--------A--GT---TTA-----CCA--------GA-T-G-TTT-C-G--AACGATAA----T--------AA--TAGTT--GG-----GCCTA-T----GCCTTATTGG-CG---T-C-AC-CTG-TA-------CA-GACAGATTTAA---A--TC-TCGCT-ATT-Cta
gi|19 : attcaattatt-----T--TAA---AACGAATA----TC--A--CAAAA-G-----TTG-TTA--------G--TT---TTC-----CAA--------AA-T-T-GAT-C-T--AACCGAAT----C--------AA--cttcgtaaattattgtccttggacattcaatataaaatatatcttttatggaaataattttgtataaaccgtatattttaaaagtttaccatgatattatcgaaccatatcaagaaattgaccattgggctttatggctttctttatacgagatttgtatatcgctattcctttgcctaattctgtgattttaagggcatttt
gi|7 : aaATAT-----TT--AG-CAGAA-G-----TTGCTTA--------A--AT---CTA-----CTACATTTGTAGA-T-T-TAT-C-T--AACTGTAT----C--------AA--GATAT--AA-----GCTTG-T-GC-GCCTCA-TTG-C----T-C-AC-GTA-CA-------TG-AATG-AGTT-G---G--TG-TCGCT-ATT-C
gi|3 : gataaaggttttatc--A--CAAAA-A-----TCTTTTA--------C--GT---TTA-----CCA--------AAAT-C-T-T-C-TGTAACA-TATTTCTC--------AA--GAAAT----------TCCA-T-GG-GCCTCA-TGATC----T-C-AC-CTG-T--------CG-GACA-CTTT-C---TGATA-TCGTC-TTT-CGT-A-----CTCTTTACCCCCCCGA-AAGACA-TTTTGT--TAA
gi|14 : --CAGAA-G-----TTAATTA--------A--TT---TCG-----CGA--------GA-T-C-TATGT-T--AACGGTAT----CCAAAGCGGAA--TACAC-----------CCA-T-G-------A-TGG-C----T-C-AC-CTA-CA-------CA-GACA-Aacatattcgaaccaaaagtttttgagttaactgagcgagctagaggatactatacgaactcaagatagagacccaccaagcccatgcctcccactgtacaacgat
gi|22 : --AACCATAT----C--------AA--GATATCTAG-----G-CCA-C-AGTGCCTCA-TGG-C----G-C-AC-Ca
gi|10 : TAA--AG-----GCCTG-C-AG-GCCT-A-TGG-C----T-C-ACTCTG-TA-------CAGGATG-ATTT-A---G--TG-TTGCA-ATT-GATAA-----TTTTTTA----CTCGT-TG-ATA--TTTGT--TAGGA-agt
gi|12 : G-GCCTAA-TGG------T-C-AC-CTT-GA-------CA-GATG-ATTT-A---G--TG-TTGCA-ATT-GATAA--------TTTA----CTCGATTG-ATA-GTCTGT--TATGA-CA---TGATT----GA--ACTTATTA-Gacccccattttttgaactatagcttgctttat
gi|5 : gtaaaggctgcaCTTA-TGG-T----T-C-AC-CTG-TA-------CA-GACG-ATTA-A---G--TA-TTACA-AAT--ATAA-----Attgttgta
gi|4 : aaaaggcctgcaact-C----T-CGAC-CTT-AA-------TG-ACCA-ATTT-AACAT--TA-ATACTTATT-TATAA-----ATCTCTA----CTCGA-AT-AGA-TAT-GTAACAAAAGCT---TGTT-----AGGATTTTACTT-GATCCTATCT--AACTGTATCAAGATAT--G-GGTCCATG--------GGGCCCCATGG-C--atggcgaagtaacaaagtatgaaaactgataaatttttactcgtaaatgatctgttaaaggatattgaacacatgttgttcaatttagcgagatttttttttgcgatatatg
gi|2 : -----ATCTTT-----TATGG-AA-ATAATTTTGT--ATAAA-CCGTATATTTTAAAAG--TTT-ACCATGATA-T-TATCGAACCATATCAAGAAAT--T-GA-CCAT--------TGGGCTTTATGG-CTTT-CT-T-TA-TAC---G-A-GATTT--GTA-TAT---------CG----CTATTagcgtgcaccttgtagcgttagcaaacgattttgtgtttgctattacaaaaatcatatctttac
gi|7 : attcaattattttttatgataaaaaatatataaaacaaaagttgtaaagtttaccagatgtttcgaacgataataatagttgggcctatgccttattggcgtcacctgtacagacagatttaaatctcgctattccttcgtaaattattgtccttggacattcaatataaaatatTA-GATT-TATCT--AACTGTATCAAGATAT--A-AG-CT------TGTGC--GCCTCATTG-C--T-CA-C---GTACAT-GAATGAGTT--G-G-TGT---------CG----CTATTcctttgcctaattctgtgattttaagggcatttt
gi|6 : gataaaggttttatcatatttagcagaagttgcttaaatctactacatttgTC-TATCA--AACCGTATCA---TAT--AAGG-CC-TGCAG-------GCTT-ATGG-C--TTCAGC-CTGTAC-TAG-ATGATTT--A-AGTGTC--------TG----CAAATTGCATAA--TTTT--TTCTCGTTG-ATATTCTGT--TAATGACATTTc
gi|22 : gtgggccctcatgc--AACCATATCAAGATATCTA-GG-CCA--CAGTG------CCTCATGG-C--G-CA-C-CAGTtgaacaatagtgtgt
gi|10 : GCAGGCCT-ATGG-C--T-CA-CTCTGTACAG-G-ATGATTT--A-G-TGT---------TG----CAATTG--ATAA--TTTT
gi|12 : taaaggcctGCAGGCCTAATGG----T-CA-C-CTTGAC-A-G-ATGATTT--A-G-TGT---------TG----CAATTG--ATAA--TTttactcgttgatatttgttaggaacccccattttttgaactatagcttgctttat
gi|3 : gtaaaggctGGGCCTCATGATC--T-CA-C-CTGT-C-G-G-ACACTTTCTG-A-TATCGTCTTTCGTA----CTCTTT--AC----CCC-----CCCGAAAGACATTTTGT--TAA-A-CAT--ATTCGAA--CCAAAAG-TTTTTGA-G--TTAA-CTG-------AG---CG-AG-CTAGAGGATACTA-TACGAACT----C--AAGA--TAG---A--GACCCAC--CAAGCC-CAT-GC-C----T-C-C-CAC-TGTA----tactcgattgatagtctgttatgacatgattgaacttattagttgttgta
gi|4 : acaaaaatcttttacgtttaccaaaatcttctgtaacatatttctcaagaaattccatATTT--A-A-CAT---------TAATACTTATTT--ATAAATCTCTA---CTCGAAT-AGAT--------------ATGTA-----A--C-AAAAGCTTGTT-A-GGATTTT-ACT-------TGAT-CCTAT-CTA------ACTG-TA-----T----C--AAGA--T-A---T--GGGTC-CATGGGGCCCCAT-GG-CAGCGTGC-A-C-CTTGTAGCGTT-AGCA----AACGATT--T-T-GTGTTT----G-CTA----TTACAAAAAT--Ccaacgat
gi|2 : ctcgaccttaatgaccaT--ATAT--CTTTTATG---GAAA-TAATTTTGTA-TAA-ACCGTATATT---T--T-AAAAG-T---TTA---------CCA-------TGATATT-AT-CGA------ACCA-TA-----T----C--AAGA----A---ATTGACCA-T--TGGGCTTTAT-GG-C----T-T---T-C-TTTA----T-AC-G----A--GATT--T-GTATA-TC----G-CTA----TT-Catatctttac
gi|7 : attcaattattttttatgataaaaaatatataaaacaaaagttgtaaagtttaccagatgtttcgaacgataataatagttgggcctatgccttattggcgtcacctgtacagacagatttaaatctcgctattccttcgtaaattattgtccttggacattcaatataaaaAA-AGGTTTTAT--CA----TATTTA-----G--C-AGAAG-TTGCTTA-A--ATCTACTACATTTGTAGAT-TT-AT-CTA------ACTG-TA-----T----C--AAGA--TAT---A--AGCTT-G--TGCGCCTCAT-TG-C----T-C-A-C-G-TACA----T-GA-A----T--GAGT--T-G-GTG-TC----G-CTA----TT-Cctttgcctaattctgtgattttaagggcatttt
gi|2 : gatTTTTATGATAA-AAAATATATA---AAAC-AAAAG-TTGTAAA-G--TTTA-CCA-------GA---TG-TT-TCG------AACGATA-----A----T--AATAGTTGG---G------C-C--TATGCCTTATTGG-CG---T-C-A-C-C-TGTA----C-AG-AC---A--GATT--TAA-ATC-TC----G-CTATTCCTT-CGTAAATTATTGTC----CTTG---G-ACATTCAAT-A-TAA-AA--T-AT-AT
gi|19 : attcaattattAT--TAA-AACGAATATC---A--C-AAAAG-TTGTT-A-G--TTTT-CCA-------AAAT-TG-AT-CTA------ACCG-AA-----T----C--AActtttatggaaataattttgtataaaccgtatattttaaaagtttaccatgatattatcgaaccatatcaagaaattgaccattgggctttatggctttctttatacgagatttgtatatcgctattcctttgcctaattctgtgattttaagggcatttt
gi|3 : a---A--C-AAAAA-TCTTTTACG--TTTA-CCA-------AAAT-CT--T-CTGT-----AACA-TA-----TTTCTC--AAGA-----------AATTC-CA-TGGGCCTCAT-GATC----T-C-A-C-C-TGT-----C-GG-A----C--ACTTTCT-G-ATA-TC----G-TCT----TT-CGT-ACT--CTTTACCCCCCCGA-AAGACATTT--TGT-TAA--A--C-AT-ATTCGAACCA--AA----AGT
gi|14 : --C-AGAAG-TTAATTA-A--TTTC-GCG-------AGAT-CT-ATGTTA------ACGG-TA-----T----CCAAAGC--GGA---A--TACAC-C--CATG----AT-GG-C----T-C-A-C-C-TACA----C-AG-A----ttttgagttaactgagcgagctagaggatactatacgaactcaagatagagacccaccaagcccatgcctcccactgtacaacgat
gi|6 : T-CT-AT-CAA------ACCG-TA-----T----C---ATA--TAA---G--GCCTG-C--AGG--CTTAT-GG-CT---T-C-AGC-C-TGTAC---T-AG-A----T--GATT--TAA-GTG-TCTGCAA---A----TTGCAT-AAT--TTTTT----CTCGT-TG-ATATTC--TGT-TAATGA--C-AT-TTT--GAACAATAG----TGTGcaaa
gi|22 : gtgggccctcatgc------ACCA-TA-----T----C--AAGA--T-ATCTA--GGCCA-C--AGTGCCTCAT-GG-C----G-C-A-C-C-AGTt
gi|9 : aA--TAA---A--GGCCT-G--CAGGCCTAAT-TG-C----T-CCA-C-C-TGTA----C-AG-ATCGTA--AATT--TCA-GTT-TT----AGCAA----TTGGATAATT--TCA-A----CTCGT-TG-ATA-TC--TGATTAA-GA--CGAT-CTT--GAACA--AA----AGT
gi|8 : A--TAA---A--GGCCT-G--CAGGCCTAAT-TG-C----T-CCA-C-C-TGTA----C-AG-ATCGTA--AATT--TCA-GTT-TT----AGCAA----TTGGATAATT--TCA-A----CTCGT-TG-ATA-TC--TGATTAA-GA--CGAT-CTT--GAACA--AA----AGTtgttata
gi|10 : --TAA---A--GGCCT-G--CAGGCCT-AT-GG-C----T-C-A-CTC-TGTA----CAGG-A----T--GATT--T-A-GTG-TT----G-CAA----TT-GATAATT--TTTTA----CTCGtgttata
gi|12 : --TAA---A--GGCTG-C---AGGCCTAAT-GG------T-C-A-C-C-TTGA----C-AG-A----T--GATT--T-A-GTG-TT----G-CAA----TT-GATAATT-----TA----CTCGATTG-ATAGTC--TGT-TAT-GA--C-ATGATT--GAACttgatatttgttaggaacccccattttttgaactatagcttgctttat
gi|5 : gCTTAT-GG-T----T-C-A-C-C-TGTA----C-AG-A----C--GATT--A-A-GTA-TT----A-CAA----AT--ATAAAttattagttgttgta
gi|16 : aaaaggcctgcaactA-AA-ACATTT--TGA-TAA-GA--C-AC-ATT--GAACA--AAACGTTGGGAATTTTTATTTTATCTAT-CTAAGCGTATCATatggcgaagtaacaaagtatgaaaactgataaatttttactcgtaaatgatctgttaaaggatattgaacacatgttgttcaatttagcgagatttttttttgcgatatatg
gi|2 : TTTA-TGA-TAA-AAAAT-AT-ATA--AAACA--AAAGT-TGTAAAGTTT-ACCAGATGTTT-CGAACGATA--ATA-ATAGTTGGGCCTATGC------CTTAT--TGGCGT-C-A-C-C-TGTAC-AG-A-CAGAT------TTA---------AAT---a
gi|6 : attcaattatttGTGGGCCCTCATGC--TCTAT-CAAACCGTATCATATA-----AGGCCT--GCAG---GCTTAT---GGC-TTC-AGC-C-TGTACTAG-A-T-GAT------TTA---------AGT---GTC---------------T-GCAAATTGCATAATTTTTT-CTCG-TTGATAT-TCTG---TTAATG-A-----C-A--T-TTTGA-AC--Actcgctattccttcgtaaattattgtccttggacattcaatataaaatatatcttttatggaaataattttgtataaaccgtatattttaaaagtttaccatgatattatcgaaccatatcaagaaattgaccattgggctttatggctttctttatacgagatttgtatatcgctattcctttgcctaattctgtgattttaagggcatttt
gi|14 : TTTCGCGAGATCTATGTTAACGGTATC--C-A-----AAGC----GGAATACACCCATGATGGC-T-C-A-C-C-TACAC-AG-A-C-AAatagtgtgt
gi|9 : cagaagttaattaaATA-A-----AGGCCT--GCAG---GCCTAA--TTGC-T-CCA-C-C-TGTAC-AG-ATC-G---------TA---------AATTTCAGT-------------TTTAGCAATT-GGATAA-TTTCAACTCG-TTGATA--TCTGA--TTAA-G-A-----CGA--T-CTTGA-AC--AAAAGT-TGTTa
gi|8 : ATA-A-----AGGCCT--GCAG---GCCTAA--TTGC-T-CCA-C-C-TGTAC-AG-ATC-G---------TA---------AATTTCAGT-------------TTTAGCAATT-GGATAA-TTTCAACTCG-TTGATA--TCTGA--TTAA-G-A-----CGA--T-CTTGA-AC--AAAAGT-TGTTata
gi|10 : TA-A-----AGGCCT--GCAG---GCCTAT---GGC-T-C-A-C-TCTGTAC-AGGA-T-GAT------TTA----------------GT-------------GTT-GCAATT-G-ATAATTTTTTACTCG-TTGATAT-T-TG---TTAG-G-AACCCCC-ATTT-TTTGA-ACT-ATAGCT-TGCTTTATata
gi|12 : TA-A-----AGGC-T--GCAG---GCCTAA--TGG--T-C-A-CCT-TG-AC-AG-A-T-GAT------TTA----------------GT-------------GTT-GCAATT-G-ATAA---TTTACTCGATTGATAG-TCTG---TTAT-G-A-----C-A--TGATTGA-ACTTATTAGT-TGTT
gi|11 : gG-A-----AGGCCT--GCAG---GCTAGA--TG-C-T-C-A-C-T-GGTAC-AG-A-T-GAT------GT------------T---AGT-------------GTT-GCCGTT-G-AAATTTTTTTACTCG-TTCATAGAACTG---TTAT-G-A-----C-A--T--TTG--ACTAATTAGT-TGTTTAgta
gi|5 : ta-A-----AGGCCT--GCAA----CTCTTA-TGGT-T-C-A-C-C-TGTAC-AG-A-C-GATTAAGTATTACAAATATAAAAT---GGCGAAGTAACAAAGTATG-AAAACT-G-ATAAATTTTTACTCG-TAAATGA-TCTG---TTAA-A-G-----G-A--T-ATTGA-AC--ACATGT-TGTTCAATTTAGC-------G-AGATTTTTTTTT-GCGATATAta
gi|13 : aaAC-AG-A-T-GAT------TTA----------------GT-------------GTT-GCAAATTG-ATA-TTTTTAACTCG-TTGATAT-TCT----TTAT-GAA-----C-A--T-TTTGACACT-AT-AGTATGTTTAtg
gi|17 : gtaTT-GCAATT-G-ATAA--TTTTACTCG-T-TATAT-T-TG---TTAT-G-A-----C-A--T-TTTGA-ACT-AT-AGT-TGTTt
gi|18 : gT-G-ATAATTTTTTACTCG-TTGATAT-TCTGAACTT---G-A-----C-A--T-TTTGA-ACT-AT-AGT-TGTTTAat
gi|20 : t-G-A-----C-A--T-ATTGA-AC--AACAGT-T---TAATTTCAC-------G-AGA-TCTATATT-ACGTTATAAAAAATt
gi|7 : -----C-A--T-ATTTA-GC--AGAAGT-TGCTTAAATCTACTACATTTGTAGA-TTTATCTA-ACTGTATCAAGA-TATAAGCTTGTGCGCCTCATTGCTCACGTACA
gi|14 : gataaaggttttatC--AGAAGT-TAATTAATTTCGC-------G-AGA-TCTATGTTAACGGTATCCAAAG---CGGAATACACCCATGATGGCTCACCTACACAGACAAAtgaatgagttggtgtcgctattc
gi|23 : AGG-TGTTTAATTTCAC-------G-AGA-TCTATATT-ACATTATAAAAA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): ATGAAAGGCTAGCAGGCCTAAGGCTCAATGTACAGGACGGATTAACCTGTGTGTGCACATTAGTAATCTTT
Unaligned ( gi|21 ): TCTGTGACAGACCTATTAAAATATAAAATGGCGAAGCAACAAAGCATGAAA
Alignments
lowQualScore : 2222 1 2 555555 11 2 1 11 1 1 2222 2222 1111 1 1 1 1 4444444 1111 4444 222222 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222 1 111 222222222222 22222222222 111 1 1 55555 1 1 4 2 1 3333 1 999999999 2 444444 1 11111 333333 33333 2 1 2 1 111 222 2 222 2222 11 1111111 777777777777777777777777 11111 111111 1111
lowQualScore : 3 4444 2 0 1 2 0 0 888888 1 88 7 7 0 1 66 0 11 0 3 1 5 1 44 3 6 3 44 8888 0000 7777 3 0 0 0 3 2222222 22 1111 2222 1 2 444444 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 000 8 0 1 888 3 222222222222 1 99999999999 555 0 0 4 00000 7 6 6 6 1 5 6 0 0 4 5 2 3 1111 55 5 6 666666666 0 1 7 1 000000 5 1 0 77777 888888 33333 6 0 5 2 3 0 5 1 6 1 1 333 6 444 6 6 0 1 333 1 0 0000 1 5 1 33 5 888 5 5 5 6666666 5 666666666666666666666666 8 8 4 4 3 4 1 4 1 777 4 2 4 00000 55 88 4 555555 3 8 1 8 1 4444 2 6666 6 1 1 1 1 1
lowQualScore : . .... . . . . . . ...... . .. . . . . .. . .. . . . . . .. . . . .. .... .... .... . . . . . ....... .. .... .... . . ...... .................................................................................................. ... . . . ... . ............ . ........... ... . . . ..... . . . . . . . . . . . . . .... .. . . ......... . . . . ...... . . . ..... ...... ..... . . . . . . . . . . . ... . ... . . . . ... . . .... . . . .. . ... . . . ....... . ........................ . . . . . . . . . ... . . . ..... .. .. . ...... . . . . . .... . .... . . . . . .
lowQualScore : 0 0000 5 0 0 5 0 7 777777 0 33 3 3 7 0 77 7 77 0 0 0 3 0 33 7 0 3 33 3333 7777 0000 3 0 0 0 2 5555555 00 2222 5555 2 5 555555 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 444 0 6 4 888 8 444444444444 4 22222222222 222 0 0 0 00000 0 0 0 0 0 0 0 0 0 0 5 5 0 5555 00 5 0 000000000 0 0 3 0 777777 3 0 7 33333 333333 33333 0 0 5 5 0 0 0 0 0 0 0 000 0 000 0 0 0 0 333 0 7 3333 0 0 7 99 7 666 0 0 0 2222222 0 222222222222222222222222 9 9 4 0 4 4 9 4 1 888 4 6 0 00000 55 99 0 777777 6 0 0 0 0 0000 5 5555 0 0 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCNTATCAAGATGTCCAAGGCCCGCAG-GCCTNATNGCTCCACCTGTACGGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTAG-TTTACCAGA-TNT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCA-TGG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACTC-TTCATAANTCNCTA--CTCG------------AAA-ACAT-TTTGTTA-AGAAAT-ATATT---AC-A-AAA--G-T-TGTTT----AG--TT-----------TTACTA--------GATAC-TAT-CTAACCGTATCAAGATATAGGCCCG-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTAT---ATCACAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTATGN-ATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTAATGGC-TCA-C-CTGTAC-A-G-ACG-------ATT-TAA-TA--------------------GTGT-TGC-A-ATTG-ATAATTTTTTACTCG-TTGATAT-TCTG---TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
Reference ( family-1596 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCATATCAAGATATCTAAGGCCCGCAG-GCCTNATGGCTC-ACCTGTACGGA-CG---ATTTTAATTTTAGCAATTGGATAATCTCNACTCGAAGACATCTNGTTAAGAC-ATATNGAACAAAAGTTGTTTAGTTTTACNAGN-TCTATCTA-ACCGTAT----CAAGATANAGGCCCGCGGGCCTCA-TGG-C-TC-ACCTGTACGGAC-------GATTTAGNNTTCAATA----TTTATAACTCGCTA--CTCG------------AAA-ATAT-TTTGTTA-AGAAGT-ATATT---AC-A-AAA--G-T-TGTTT----AG--TT-----------TTACNA--------GAT-C-TAT-CTAACCGTATCAAGATATAGGCCCA-C-GGGCCTCATGGC----T-CAC-C-TGTA-------CGGACGATTTA-GTG-TCGCTATT-CATAA-----ATCTTTACTCGAAGATATTTTGTTAAGACNTGTTTAGTTTTACTAGATCTATCTAACCGTATCAAGATATAGGCCATGCAGTGG-CGGGCCTCATGG-CTCACCTGTACGGATGATTT--GGTGTTGCNATTTATAACTTT--T------CTCGAAA-ANATTTTGTTAAAACATNT---AT-ACAAAAGTTGTTTAGTTTNCCGAGATCTATCTA------ACCGTA-----TCAAGATAAAGGCCC-CCGGGCCTCATGGCTCAC-CTGTACAGANGATTTAGTGTCGCNATTCATAANTTTNTACTCGNTGACATTCTGATAAGACATATTGAAC-AAANGT---GAANTTTCACGNGATCTATCNAACCGTATCATA-AAGGCCTGCAGGCCTANTGGC-TCA-C-CTGTAC-A-G-ACG-------ATT-TAAATA--------------------GTGT-TGC-A-ATTG-ATAATTTTTTACTCG-TTGATAT-TCTG---TT-ANG-A-----CA--T-NTTGA-AC-T-ANAAGT-TGTTTAATTTCGCGAGA-TCTATNTTA-CGNTATAAAAAGTATCGGNNTGCGCNCNTNATNGCTCACNTACACAGACAAA
gi|1 : AACCCTATC----TGTCCAAGGCCCACAG-GCCTCATGGCTC-ACCTGTACGGA-TG---ATTTTAA-------AA--GG----TCTTTACTCAAAAGCATTTTGTTAAGAC-ATATAAAACAAAAGTTGTTTAGTTTCACTAGT-TTTATCTA-ACTGTAT----CAAGATAAAGGCCCACGAGCCTCA-TGG-C-TC-ACCTGTATGGAC-------AATTTAGGGT-CAATA----TTTATAACTCGCTA--CTTG------------AAA-ACAT-TTTGTTA-AAAAAT-ATATT---AC-A-AAA--G-T-TGCTT----AG--TT-----------TTACTA--------GAT-C-TAT-CTAACAGTATCAATATATAGGTCCA-T-GGGCCTCATGGC----T-CAC-C-TTTA-------CAGACAATTTA-TTG-TTGCTATT-CATAA-----ATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGG-CTCACCAGTACTGATGATTT--AATGTTACTATTTATAACTCTAATG-----CTTGAAA-ACATTTTATTAAAACATTT---ATTACAAAAGTCGTTTAGTTTTCCAAAATCGATCTG------ACCGTA-----TCAAGATGAAGACTC-CCGGGCCTCATGGCTCAC-CTGTATGGAAGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTAAAC-AAATGT---GAACTTTTATGAGATCTATTTAACGGTATCATG-AAGGCCTGCAAACTTTTTGGC-TCA-C-TTGTAC-A-G-ACG-------ATT-TAAATA--------------------GCAT-TGC-A-AGTG-ATAATTTTTTACTCG-TAAATAT-TCTG---TT-AAG-A-----CA--T-ATTGA-AC---ATAAGT-TGTTTAATTTTACGAGA-TCTATATTA-CGTTATAAAAAATATCTGCCCACACGCCTCATGGCTCATATACACAGACAAA
gi|10 : gacccacgattgatgatcaatgcttttcattttgatgttgttcaattgaaaccttgggatattgttaatcatcaagtgtcagagtgagTA-AAGGCCTGCAGGCCTA-TGGC-TCA-CTCTGTAC-A-GGATG-------ATT-TA------------------------GTGT-TGC-A-ATTG-ATAATTTTTTACTCG-TTGATAT-T-TG---TT-AGG-AACCCCCATTT-TTTGA-AC-T-ATAGCT-TGCTTTATaacctcaagaatgttacctgcaaccctgatgccttctgattttt
gi|11 : -AAGGCCTGCAGGC-TAGATGC-TCA-C-TGGTAC-A-G-ATG-------ATG-T---TA--------------------GTGT-TGC-C-GTTG-AAATTTTTTTACTCG-TTCATAGAACTG---TT-ATG-A-----CA--T--TTG--AC-TAATTAGT-TGTTTA
gi|12 : tagTA-AAGGC-TGCAGGCCTAATGG--TCA-C-CTTGAC-A-G-ATG-------ATT-TA------------------------GTGT-TGC-A-ATTG-ATAA---TTTACTCGATTGATAG-TCTG---TT-ATG-A-----CA--TGATTGA-ACTT-ATTAGT-TGTTta
gi|13 : gAC-A-G-ATG-------ATT-TA------------------------GTGT-TGCAA-ATTG-AT-ATTTTTAACTCG-TTGATAT-TCT----TT-ATGAA-----CA--T-TTTGACAC-T-AT-AGTATGTTTAgta
gi|14 : gta-AGAAGT-TAATTAATTTCGCGAGA-TCTATGTTAACGGTATCCAAAG---CGGAATACACCCATGATGGCTCACCTACACAGACAAAt
gi|15 : cA-AAGGCTAGCAGGCCTAA-GGC-TCA---ATGTAC-AGG-ACG-------GAT-TAACCT--------------------GTGTGTGC-ACATTA-GTAATCTTT
gi|16 : atgACATTTTGATAAGACACATTGAACAAAACGTTGGGAATTTTTATTTTATCTATCTAAGCGTATCATA-
gi|17 : aaaGT-TGC-A-ATTG-ATAA--TTTTACTCG-TT-ATAT-T-TG---TT-ATG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTT
gi|18 : TTG-ATAATTTTTTACTCG-TTGATAT-TCTGAACTT---G-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTTTAat
gi|19 : TTAAAACGAAT---ATCACAAAAGTTGTT-AGTTTTCCAAAATTGATCTA------ACCGAA-----TCAAt
gi|2 : aaAAAAT-ATATAAAACAAAAGTTGTAAAG-TTTACCAGA-TGTTTCGA-ACGATAA----TAATAGTTGGGCCTAT--GCCTTATTGG-CGTC-ACCTGTACAGACA------GATTTAAATCTCGCTATTCCTTCGTAAATTATTGTCCTTGGACATTCAATATAAA-ATATATCTTTTATGGAAATAATTTT---GT-ATAAACCG-TATATTTTAAAAG---T-----------TTACCAT-------GATAT-TAT-CGAACCATATCAAGAAATTGACCAT-T-GGGCTTTATGGC----T-TTCTT-TATA-------CGA--GATTTGTATA-TCGCTATT-C
gi|20 : attcaattattttttatgataaG-A-----CA--T-ATTGA-AC-A-ACA-----GTTTAATTTCACGAGA-TCTATATTA-CGTTATAAAAAATctttgcctaattctgtgattttaagggcatttt
gi|22 : AACCATATCAAGATATCTAGG--CCACAGTGCCTCATGGCGC-ACCAGT
gi|23 : AGG-TGTTTAATTTCACGAGA-TCTATATTA-CATTATAAAAA
gi|3 : ACAAAAATCTTTTACGTTTACCAAAATCT-TCTGTAACATATTTCTCAAGAAAT---TCCATGGGCCTCA-TGATC-TC-ACCTGT-CGGACACTTTCTGATATCGTCTTTCGTA----CTCTTTACCC-C----CCCG------------AAAGACAT-TTTGTTA-AA---C-ATATTCGAACCA-AAA--G-T-TTTTG----AG--TTAACTGAGCGAGCTAGAG--------GATAC-TATACGAAC----TCAAGATAGAGACCCACC-AAGCC-CATGCC----T-CCCAC-TGTA-------C-AACGAT
gi|3 : GGGCCTCATGATCTCACCTGT-CGGACACTTTCTGATATCGTCTTTCGTA-CTCT--TTACCCCCCCGAAAGACATTTTGTTAAA-CATATTCGAA-CCAAAAGTTTTTGAGTTAACTGAG--CGAGCTAGAGGATACTATACGAACTCAAGATAGAGACCCACCAAGCC-CATGCCTCCCACTGTACA-ACGAT
gi|4 : acaaaaatcttttacgtttaccaaaatcttctgtaacatatttctcaagaaattccat-C-TCGACCTTAATGACC-------AATTTAACATT-AATACTTATTTATAAATCTCTA--CTCG------------AA------------TA--GA--T-ATGTA---AC-A-AAA--GCT-TGTT-----AGGATT-----------TTACTT--------GAT-CCTAT-CTAACTGTATCAAGATATGGGTCCA-TGGGGCCCCATGGCAGCGTGCAC-CTTGTAGCGTTAGCAAACGATTTT-GTGTTTGCTATTACAAAAATCATATCTTTAC
gi|5 : A-AAGGCCTGCAACTCTTATGGT-TCA-C-CTGTAC-A-G-ACGATTAAGTATTACAAATATAAAATGGCGAAGTAACAAAGTAT-GAA-A-ACTG-ATAAATTTTTACTCG-TAAATGA-TCTG---TT-AAA-G-----GA--T-ATTGA-AC---ACATGT-TGTTCAATTTAGCGAGATTTTTTTTTG-CGATATA
gi|6 : aGT---GGGCCCTCATGC--TCTATCAAACCGTATCATATAAGGCCTGCAGGCTTA-TGGCTTCAGC-CTGTACTA-G-ATG-------ATT-TA---A--------------------GTGTCTGCAA-ATTGCATAATTTTTT-CTCG-TTGATAT-TCTG---TTAATG-A-----CA--T-TTTGA-AC-tg
gi|7 : -ATATTTA-GC-A-GAA--G-T-TGCTT----AA--AT-----------CTACTACATTTGTAGAT-T-TAT-CTAACTGTATCAAGATATAAGCTTG-T-GCGCCTCATTGC----T-CAC-G-TACA-------TGAATGAGTTG-GTG-TCGCTATT-Caatagtgtgt
gi|8 : gataaaggttttatcAAGGCCTGCAG-GCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTT
gi|9 : ataAAGGCCTGCAG-GCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTTata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCTGTGACAGACCTATTAAAATATAAAATGGCGAAGCAACAAAGCATGAAA
Alignments
lowQualScore : 8888 1 1 222222 1 2222 1111 11 1 1 1 1 3333333 1111 22222 1111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 222222 111111 111 2222222 111 1 1 22222 1 1 11 1 333333333 1 222 2 333333 33333 1 1 1 1 1 222 222222 444444 11111 111 111
lowQualScore : 1 5555 0 1 1 6 0 6 6 7 7 8 1 1 3 3 333333 3 44 8888 2222 00 3 0 0 0 2 333 5555555 22 4444 33333 2 3 4 1 7777 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 5 8 0 7 99 333333 1 1 555555 666 6666666 6 0 000 0 0 1 77777 5 1 5 1 1 88 1 5 666666666 5 7 0 7 333 0 6 0 7 888888 33333 5 5 1 1 5 5 1 5 333 444444 5 99 5 888 5 5 5 0 222222 8 4 4 3 3 4 1 4 1 66 4 4 00000 55 88 4 444 9 3 8 8 1 333 1 22 1 1 1 1
lowQualScore : . .... . . . . . . . . . . . . . . ...... . .. .... .... .. . . . . . ... ....... .. .... ..... . . . . .... ............................................................................................... . . . . .. ...... . . ...... ... ....... . . ... . . . ..... . . . . . .. . . ......... . . . . ... . . . . ...... ..... . . . . . . . . ... ...... . .. . ... . . . . ...... . . . . . . . . . .. . . ..... .. .. . ... . . . . . ... . .. . . . .
lowQualScore : 0 0000 7 0 0 7 7 7 7 3 3 8 0 0 3 3 000000 3 33 3333 3333 33 3 0 0 0 5 888 2222222 00 8888 88888 0 2 5 0 8888 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 0 6 8 22 333333 0 7 888888 888 0000000 4 8 555 0 0 0 00000 5 0 5 0 0 00 0 5 000000000 0 3 7 3 333 7 7 7 3 333333 33333 5 5 0 0 5 0 0 5 333 333333 0 33 7 666 0 0 0 4 666666 9 0 0 6 6 4 9 4 1 11 4 0 00000 55 99 0 000 1 6 0 0 0 333 0 00 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATC----TGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCA-TGG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT--A--CA-AAA--G-T-TGTTT----AG--TT---TTA-----CTA-A------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTAATGGCT-CA-C-CTGTAC-A-G-ACGATTT-AA-A-GTGT-TGC-A-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
Reference ( family-1596 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCNTATCAAGATGTCCAAGGCCCGCAGGCCTNATNGCTCCACCTGTACGGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-NT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCA-TGG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTCATAANTCNCTA--CTCG------------AAA-ACAT-TTTGTTA-AGAAAT-ATATT--A--CA-AAA--G-T-TGTTT----AG--TT---TTA-----CTA--------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CG-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCA---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTAATGGCT-CA-C-CTGTAC-A-G-ACGATTT-AATA-GTGT-TGC-A-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
gi|1 : AACCCTATC----TGTCCAAGGCCCACAGGCCTCATGGCTC-ACCTGTACGGAT----------GATTTTAA-AA--GG----TCTTTACTCAAAAGCATTTTGTTAAGAC-ATATAAAACAAAAGTTGTTTA-GTTTCACTAGT-T-TTATCTA-ACTGTAT----CAAGATAAAGGCCCACGAGCCTCA-TGG-C-TC-ACCTGTATGGACA-------ATTTAGGGT-CAATA-----TTTATAACTCGCTA--CTTG------------AAA-ACAT-TTTGTTA-AAAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CTA--------GAT-CTAT-CTAACAGTATCAATATA--TAGGTC-CA-T-GGGCCTCATGGC----T-CAC-C-TTTA-------CAGACAATTTA-TTG-TTGCTATT-CATAAATC-----TTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGG-CTCACCAGTACTGATGATTT--AATGTTACTATTTATAACTCTAATG-----CTTGAAA-ACATTTTATTAAAACATTTATTA---CAAAAGTCGTTTAGTTTTCCAAAATCGATCTG------ACCGTA-----TCAAGATGAAGACTC-CCGGGCCTCATGGCTCAC-CTGTATGGAAGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTAAAC-AAATGT---GAACTTTTA-TGAGATCTATTTAACGGTATCATG-AAGGCCTGCAAACTTTTTGGCT-CA-C-TTGTAC-A-G-ACGATTTAAATA-GCAT-TGC-A-A-GTG-ATAATTTTTTACTCG-TAAATAT-TCTG--TT-AAG-A-----CA--T-ATTGA-AC---ATAAGT-TGTTTAATTTTACGAGA-TCTATATTA-CGTTATAAAAAATATCTGCCCACACGCCTCATGGCTCATATACACAGACAAA
gi|10 : gacccacgattgatgatcaatgcttttcattttgatgttgttcaattgaaaccttgggatattgttaatcatcaagtgtcagagtgagTA-AAGGCCTGCAGGCCTA-TGGCT-CA-CTCTGTAC-A-GGATGATTT-A----GTGT-TGC-A-A-TTG-ATAATTTTTTACTCG-TTGATAT-T-TG--TT-AGG-AACCCCCATTT-TTTGA-AC-T-ATAGCT-TGCTTTATaacctcaagaatgttacctgcaaccctgatgccttctgattttt
gi|11 : -AAGGCCTGCAGGCTAGATG-CT-CA-C-TGGTAC-A-G-ATGATGT---TA-GTGT-TGC-C-G-TTG-AAATTTTTTTACTCG-TTCATAGAACTG--TT-ATG-A-----CA--T--TTG--AC-TAATTAGT-TGTTTA
gi|12 : tagTA-AAGGC-TGCAGGCCTAATGG-T-CA-C-CTTGAC-A-G-ATGATTT-A----GTGT-TGC-A-A-TTG-ATAA---TTTACTCGATTGATAG-TCTG--TT-ATG-A-----CA--TGATTGA-ACTT-ATTAGT-TGTTta
gi|13 : gAC-A-G-ATGATTT-A----GTGT-TGCAA-A-TTG-AT-ATTTTTAACTCG-TTGATAT-TCT---TT-ATGAA-----CA--T-TTTGACAC-T-AT-AGTATGTTTAgta
gi|14 : gtaAAGT-TAATTAATTTCGCGAGA-TCTATGTTAACGGTATCCAAAG---CGGAATACACCCATGATGGCTCACCTACACAGACAAAt
gi|15 : cagA-AAGGCTAGCAGGCCTAA-GGCT-CA---ATGTAC-AGG-ACGGATT-AACCTGTGTGTGC-ACA-TTA-GTAATCTTT
gi|16 : atgAAAACATTTTGATAAGACACATTGAACAAAACGTTGGGAATTTTTATTT-TATCTATCTAAGCGTATCATA-
gi|17 : GT-TGC-A-A-TTG-ATAATTTT--ACTCG-TT-ATAT-T-TG--TT-ATG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTT
gi|18 : -TTG-ATAATTTTTTACTCG-TTGATAT-TCTGAACT--TG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTTTAat
gi|19 : TTAAAACGAATATCA---CAAAAGTTGTT-AGTTTTCCAAAATTGATCTA------ACCGAA-----TCAAt
gi|2 : aaTGATAAAAAATATATAAAACAAAAGTTGTAAA-GTTT-ACCAGA-TGTT-TCGA-ACGATAA----TAATAGTTGGGCCTAT--GCCTTATTGG-CGTC-ACCTGTACAGACA------GATTTAAATCTCGCTATTCC-TTCGTAAATTATTGTCCTTGGACATTCAATATAAA-ATATATCTTTTATGGAAATAATTTT--G--TATAAACCG-TATATTTTAAAAG---T---TTA-----CCAT-------GATATTAT-CGAACCATATCAAGAAA--TTGACC-AT-T-GGGCTTTATGGC----T-TTCTT-TATA-------CGA--GATTTGTATA-TCGCTATT-C
gi|20 : attcaattattttttaG-A-----CA--T-ATTGA-AC-A-ACA-----GTTTAATTTCACGAGA-TCTATATTA-CGTTATAAAAAATctttgcctaattctgtgattttaagggcatttt
gi|22 : AACCATATCAAGATATCTAGGCCACA---GTGCCTCATGGC----G-CAC-C-AGT
gi|23 : AGG-TGTTTAATTTCACGAGA-TCTATATTA-CATTATAAAAA
gi|3 : ACAAAAATCTTTTACGTTT-ACCAAAAT-CT-TCTGTAACATATTTCTCAAGAAAT---TCCATGGGCCTCA-TGATC-TC-ACCTGT-CGGACACTTTCTGATATCGTCTTTCGTACT-C-TTTA----CCCC----CCCG------------AAAGACAT-TTTGTT----AAAC-ATATTCGAACCA-AAA--G-T-TTTTG----AG--TTAACTGAGCGAGCTAGAG-----GATACTATACGAAC----TCAAGATA--GAGACC-CACC-AAGCC-CATGCC----T-CCCAC-TGTA-------C-AACGAT
gi|3 : GGGCCTCATGATCTCACCTGT-CGGACACTTTCTGATATCGTCTTTCGTA-CTCT--TTACCCCCCCGAAAGACATTTTGTT-AAACATAT-TCGAACCAAAAGTTTTTGAGTTAACTGAG--CGAGCTAGAGGATACTATACGAACTCAAGATAGAGACCCACCAAGCC-CATGCCTCCCACTGTAC-AACGAT
gi|4 : acaaaaatcttttacgtttaccaaaatcttctgtaacatatttctcaagaaattccat-C-TCGACCT-TAATGACC------AATTTAACATT-AATACT-TATTTATAAATCTCTA--CTCG------------AA------------TA-G---AT-ATGTA--A--CA-AAA--GCT-TGTT-----AGGATT---TTA-----CTT--------GATCCTAT-CTAACTGTATCAAGATA--TGGGTC-CA-TGGGGCCCCATGGCAGCGTGCAC-CTTGTAGCGTTAGCAAACGATTTT-GTGTTTGCTATTACAAAAATCATATCTTTAC
gi|5 : A-AAGGCCTGCAACTCTTATGGTT-CA-C-CTGTAC-A-G-ACGA-TT-A--A-GTAT-TAC-A-A-AT--ATAA
gi|5 : a-A-A-CTG-ATAAATTTTTACTCG-TAAATGA-TCTG--TT-AAA-G-----GA--T-ATTGA-AC---ACATGT-TGTTCAATTTAGCGAGATTTTTTTTTG-CGATATAaatggcgaagtaacaaagtatgaaaactgataaatttttactcgtaaatgatctgttaaaggatattgaacacatgttgttcaatttagcgagatttttttttgcgatatatg
gi|6 : aaaaggcctgcaactcttatggttcacctgtacagacgattaagtattacaaatataaaatggcgaagtaacaaagtatgaaGT---GGGCCCTCA-TG-C-TCTATCAAACCGTATCATATAAGGCCTGCAGGCTTA-TGGCTTCAGC-CTGTACTA-G-ATGATTT-AA---GTGTCTGC-A-AATTGCATAATTTTTT-CTCG-TTGATAT-TCTG--TTAATG-A-----CA--T-TTTGA-AC-A-ATAtg
gi|7 : AT-AT-TT--AG-CA-GAA--G-T-TGCTT----AA--AT---CTA-----CTACATTTGTAGAT-TTAT-CTAACTGTATCAAGATA--TAAGCT-TG-T-GCGCCTCATTGC----T-CAC-G-TACA-------TGAATGAGTTG-GTG-TCGCTATT-Cgtgtgt
gi|8 : gataaaggttttatcAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTT
gi|9 : ataAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTTata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCTGTGACAGACCTATTAAAATATAAAATGGCGAAGCAACAAAGCATGAAA
Alignments
lowQualScore : 1 1 111111 1 2222 1111 1 1 1 1 1 3333333 1111 22222 1111 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 111111 111111 111 2222222 111 1 1 22222 1 1 11 1 333333333 1 2222 2 333333 33333 1 1 1 1 1 222 222222 333333 11111 111 111
lowQualScore : 0 6 0 6 0 6 7 7 8 1 1 3 3 888888 3 44 8888 2222 2 3 0 0 0 2 333 5555555 22 4444 33333 3 3 1 7777 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 8 0 7 99 666666 1 1 555555 666 6666666 6 0 000 0 0 1 77777 5 1 5 1 1 88 1 5 666666666 5 7 0 7 4444 0 6 0 7 888888 33333 5 5 1 1 5 5 1 5 333 444444 5 99 5 888 5 5 5 5 444444 8 4 7 3 4 1 4 1 66 4 4 00000 55 88 4 444 9 3 8 8 1 333 1 22 1 1 1 1
lowQualScore : . . . . . . . . . . . . . ...... . .. .... .... . . . . . . ... ....... .. .... ..... . . . .... .................................................................................................. . . . . .. ...... . . ...... ... ....... . . ... . . . ..... . . . . . .. . . ......... . . . . .... . . . . ...... ..... . . . . . . . . ... ...... . .. . ... . . . . ...... . . . . . . . . .. . . ..... .. .. . ... . . . . . ... . .. . . . .
lowQualScore : 7 7 7 7 7 7 3 3 8 0 0 3 3 000000 3 33 3333 3333 0 3 0 0 0 5 888 2222222 00 8888 88888 2 0 0 8888 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 0 6 8 22 333333 0 7 888888 888 0000000 4 8 555 0 0 0 00000 5 0 5 0 0 00 0 5 000000000 0 3 7 3 0000 7 7 7 3 333333 33333 5 5 0 0 5 0 0 5 333 333333 0 33 7 666 0 0 0 0 888888 0 0 3 6 4 9 4 1 11 4 0 00000 55 99 0 000 1 6 0 0 0 333 0 00 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCACGGGCCTCAT-GG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT---A-C-A-AAA--G-T-TGCTT----AG--TT---TTA-----CTA-------N--GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTAATGGCT-CA-C-CTGTAC-A-G-ACGAT-TTAA-----GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
Reference ( family-1596 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCAT-GG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT---A-C-A-AAA--G-T-TGTTT----AG--TT---TTA-----CTA-------A--GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTAATGGCT-CA-C-CTGTAC-A-G-ACGAT-TTAA--A--GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
gi|1 : AACCCTATCTGTCCAAGGCCCACAGGCCTCATGGCTC-ACCTGTACGGAT----------GATTTTAA-AA--GG----TCTTTACTCAAAAGCATTTTGTTAAGAC-ATATAAAACAAAAGTTGTTTA-GTTTCACTAGT-T-TTATCTA-ACTGTAT----CAAGATAAAGGCCCACGAGCCTCAT-GG-C-TC-ACCTGTATGGACA-------ATTTAGGGT-CAATA-----TTTATAACTCGCTA--CTTG------------AAA-ACAT-TTTGTTA-AAAAAT-ATATT---A-C-A-AAA--G-T-TGCTT----AG--TT---TTA-----CTA----------GAT-CTAT-CTAACAGTATCAATATA--TAGGTC-CA-T-GGGCCTCATGGC----T-CAC-C-TTTA-------CAGACAATTTA-TTG-TTGCTATT-CATAAATC-----TTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGG-CTCACCAGTACTGATGATTT--AATGTTACTATTTATAACTCTAATG-----CTTGAAA-ACATTTTATTAAAACATTTATTA---CAAAAGTCGTTTAGTTTTCCAAAATCGATCTG------ACCGTA-----TCAAGATGAAGACTC-CCGGGCCTCATGGCTCAC-CTGTATGGAAGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTAAAC-AAATGT---GAACTTTTA-TGAGATCTATTTAACGGTATCATG-AAGGCCTGCAAACTTTTTGGCT-CA-C-TTGTAC-A-G-ACGAT-TTAAATA--GCAT-TGCA-A-GTG-ATAATTTTTTACTCG-TAAATAT-TCTG--TT-AAG-A-----CA--T-ATTGA-AC---ATAAGT-TGTTTAATTTTACGAGA-TCTATATTA-CGTTATAAAAAATATCTGCCCACACGCCTCATGGCTCATATACACAGACAAA
gi|10 : gacccacgattgatgatcaatgcttttcattttgatgttgttcaattgaaaccttgggatattgttaatcatcaagtgtcagagtgagTA-AAGGCCTGCAGGCCTA-TGGCT-CA-CTCTGTAC-A-GGATGAT-TTA------GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-T-TG--TT-AGG-AACCCCCATTT-TTTGA-AC-T-ATAGCT-TGCTTTATaacctcaagaatgttacctgcaaccctgatgccttctgattttt
gi|11 : -AAGGCCTGCAGGCTAGATG-CT-CA-C-TGGTAC-A-G-ATGATGTTA------GTGT-TGCC-G-TTG-AAATTTTTTTACTCG-TTCATAGAACTG--TT-ATG-A-----CA--T--TTG--AC-TAATTAGT-TGTTTA
gi|12 : tagTA-AAGGC-TGCAGGCCTAATGG-T-CA-C-CTTGAC-A-G-ATGAT-TTA------GTGT-TGCA-A-TTG-ATAA---TTTACTCGATTGATAG-TCTG--TT-ATG-A-----CA--TGATTGA-ACTT-ATTAGT-TGTTta
gi|13 : gAC-A-G-ATGAT-TTA------GTGT-TGCA-AATTG-ATA-TTTTTAACTCG-TTGATAT-TCT---TT-ATGAA-----CA--T-TTTGACAC-T-AT-AGTATGTTTAgta
gi|14 : gtaAAGT-TAATTAATTTCGCGAGA-TCTATGTTAACGGTATCCAAAG---CGGAATACACCCATGATGGCTCACCTACACAGACAAAt
gi|15 : cagA-AAGGCTAGCAGGCCTAA-GGCT-CA---ATGTAC-AGG-ACGGA-TTAA--CCTGTGTGTGCACA-TTA-GTAATCTTT
gi|16 : atgAAAACATTTTGATAAGACACATTGAACAAAACGTTGGGAATTTTTATTT-TATCTATCTAAGCGTATCATA-
gi|17 : GT-TGCA-A-TTG-ATAATTTT--ACTCG-TT-ATAT-T-TG--TT-ATG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTT
gi|18 : -TTG-ATAATTTTTTACTCG-TTGATAT-TCTGAACT--TG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTTTAat
gi|19 : TTAAAACGAATATCA---CAAAAGTTGTT-AGTTTTCCAAAATTGATCTA------ACCGAA-----TCAAt
gi|2 : aaTGATAAAAAATATATAAAACAAAAGTTGTAAA-GTTT-ACCAGA-TGTT-TCGA-ACGATAA----TAATAGTTGGGCCTATG--CCTTATTGG-CGTC-ACCTGTACAGACA------GATTTAAATCTCGCTATTCC-TTCGTAAATTATTGTCCTTGGACATTCAATATAAA-ATATATCTTTTATGGAAATAATTTT---G-T-ATAAACCG-TATATTTTAAAAG---T---TTA-----CCA-------T--GATATTAT-CGAACCATATCAAGAAA--TTGACC-AT-T-GGGCTTTATGGC----T-TTCTT-TATA-------CGA--GATTTGTATA-TCGCTATT-C
gi|20 : attcaattattttttaG-A-----CA--T-ATTGA-AC-A-ACA-----GTTTAATTTCACGAGA-TCTATATTA-CGTTATAAAAAATctttgcctaattctgtgattttaagggcatttt
gi|22 : AACCATATCAAGATATCTAGGCCACA---GTGCCTCATGGC----G-CAC-C-AGT
gi|23 : AGG-TGTTTAATTTCACGAGA-TCTATATTA-CATTATAAAAA
gi|3 : ACAAAAATCTTTTACGTTT-ACCAAAAT-CT-TCTGTAACATATTTCTCAAGAAAT---TCCATGGGCCTCAT-GATC-TC-ACCTGT-CGGACACTTTCTGATATCGTCTTTCGTACT-C-TTTAC----CCC----CCCG------------AAAGACAT-TTTGTTA----AAC-ATATTCGAA-CCA-AAA--G-T-TTTTG----AG--TTAACTGAGCGAGCTA-------GAGGATACTATACGAAC----TCAAGATA--GAGACC-CACC-AAGCC-CATGCC----T-CCCAC-TGTA-------C-AACGAT
gi|3 : GGGCCTCATGATCTCACCTGT-CGGACACTTTCTGATATCGTCTTTCGTA-CTCT--TTACCCCCCCGAAAGACATTTTGTT-AAACATAT-TCGAACCAAAAGTTTTTGAGTTAACTGAG--CGAGCTAGAGGATACTATACGAACTCAAGATAGAGACCCACCAAGCC-CATGCCTCCCACTGTAC-AACGAT
gi|4 : acaaaaatcttttacgtttaccaaaatcttctgtaacatatttctcaagaaattccat-C-TCGACCT-TAATGACC------AATTTAACATT-AATACT-TATTTATAAATCTCTA--CTCG------------AA------------TA-G---AT-ATGTA---A-C-A-AAA--GCT-TG-TT----AGGATT---TTA-----CT--------T--GATCCTAT-CTAACTGTATCAAGATA--TGGGTC-CA-TGGGGCCCCATGGCAGCGTGCAC-CTTGTAGCGTTAGCAAACGATTTT-GTGTTTGCTATTACAAAAATCATATCTTTAC
gi|5 : A-AAGGCCTGCAACTCTTATGGTT-CA-C-CTGTAC-A-G-ACGAT-T--A--A--GTAT-TACA-A-AT--ATAA
gi|5 : aAA--A--GTAT-GAAA-A-CTG-ATAAATTTTTACTCG-TAAATGA-TCTG--TT-AAA-G-----GA--T-ATTGA-AC---ACATGT-TGTTCAATTTAGCGAGATTTTTTTTTG-CGATATAaatggcgaagtaacaaagtatgaaaactgataaatttttactcgtaaatgatctgttaaaggatattgaacacatgttgttcaatttagcgagatttttttttgcgatatatg
gi|6 : aaaaggcctgcaactcttatggttcacctgtacagacgattaagtattacaaatataaaatggcgaagtaacGT---GGGCCCTCA-TG-C-TCTATCAAACCGTATCATATAAGGCCTGCAGGCTTA-TGGCTTCAGC-CTGTACTA-G-ATGAT-TTAA-----GTGTCTGCA-AATTGCATAATTTTTT-CTCG-TTGATAT-TCTG--TTAATG-A-----CA--T-TTTGA-AC-A-ATAtg
gi|7 : AT-AT-TT---AGC-A-GAA--G-T-TGCTT----AA--AT---CTA-----CTACATTTGTA--GAT-TTAT-CTAACTGTATCAAGATA--TAAGCT-TG-T-GCGCCTCATTGC----T-CAC-G-TACA-------TGAATGAGTTG-GTG-TCGCTATT-Cgtgtgt
gi|8 : gataaaggttttatcAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTT
gi|9 : ataAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTTata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCTGTGACAGACCTATTAAAATATAAAATGGCGAAGCAACAAAGCATGAAA
Alignments
lowQualScore : 1 1 111111 1 2222 1111 111 1 1 1 1 3333333 1111 22222 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 111111 111111 111 2222222 111 1 1 22222 1 1 11 1 333333333 1 2222 2 333333 33333 1 1 1 1 1 222 222222 1 1111111 11111 111 111
lowQualScore : 0 6 0 6 0 6 7 7 8 1 1 3 3 888888 3 44 8888 2222 111 3 0 0 0 2 333 5555555 22 4444 33333 7 1 7777 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5 8 0 7 99 666666 1 1 555555 666 6666666 6 0 000 0 0 1 77777 5 1 5 1 1 88 1 5 666666666 5 7 0 7 4444 0 6 0 7 888888 33333 5 5 1 1 5 5 1 5 333 444444 5 99 5 888 5 0 0 7777777 8 4 7 3 4 1 4 1 66 4 4 00000 55 88 4 444 9 3 8 8 1 333 1 22 1 1 1 1
lowQualScore : . . . . . . . . . . . . . ...... . .. .... .... ... . . . . . ... ....... .. .... ..... . . .... ................................................................................................. . . . . .. ...... . . ...... ... ....... . . ... . . . ..... . . . . . .. . . ......... . . . . .... . . . . ...... ..... . . . . . . . . ... ...... . .. . ... . . . ....... . . . . . . . . .. . . ..... .. .. . ... . . . . . ... . .. . . . .
lowQualScore : 7 7 7 7 7 7 3 3 8 0 0 3 3 000000 3 33 3333 3333 000 3 0 0 0 5 888 2222222 00 8888 88888 0 0 8888 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 0 6 8 22 333333 0 7 888888 888 0000000 4 8 555 0 0 0 00000 5 0 5 0 0 00 0 5 000000000 0 3 7 3 0000 7 7 7 3 333333 33333 5 5 0 0 5 0 0 5 333 333333 0 33 7 666 0 0 4 4444444 0 0 3 6 4 9 4 1 11 4 0 00000 55 99 0 000 1 6 0 0 0 333 0 00 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCA-TGG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--AC-------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTNATGGCT-CA-C-CTGTAC-A-GACGATTTA---A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
Reference ( family-1596 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCACGGGCCTCA-TGG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--AN-------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTAATGGCT-CA-C-CTGTAC-A-GACGATTTA---A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
gi|1 : AACCCTATCTGTCCAAGGCCCACAGGCCTCATGGCTC-ACCTGTACGGAT----------GATTTTAA-AA--GG----TCTTTACTCAAAAGCATTTTGTTAAGAC-ATATAAAACAAAAGTTGTTTA-GTTTCACTAGT-T-TTATCTA-ACTGTAT----CAAGATAAAGGCCCACGAGCCTCA-TGG-C-TC-ACCTGTATGGACA-------ATTTAGGGT-CAATA-----TTTATAACTCGCTA--CTTG------------AAA-ACAT-TTTGTTA-AAAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--A--------GAT-CTAT-CTAACAGTATCAATATA--TAGGTC-CA-T-GGGCCTCATGGC----T-CAC-C-TTTA-------CAGACAATTTA-TTG-TTGCTATT-CATAAATC-----TTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGG-CTCACCAGTACTGATGATTT--AATGTTACTATTTATAACTCTAATG-----CTTGAAA-ACATTTTATTAAAACATTTATTA---CAAAAGTCGTTTAGTTTTCCAAAATCGATCTG------ACCGTA-----TCAAGATGAAGACTC-CCGGGCCTCATGGCTCAC-CTGTATGGAAGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTAAAC-AAATGT---GAACTTTTA-TGAGATCTATTTAACGGTATCATG-AAGGCCTGCAAACTTTTTGGCT-CA-C-TTGTAC-A-GACGATTTAAATA---GCAT-TGCA-A-GTG-ATAATTTTTTACTCG-TAAATAT-TCTG--TT-AAG-A-----CA--T-ATTGA-AC---ATAAGT-TGTTTAATTTTACGAGA-TCTATATTA-CGTTATAAAAAATATCTGCCCACACGCCTCATGGCTCATATACACAGACAAA
gi|10 : gacccacgattgatgatcaatgcttttcattttgatgttgttcaattgaaaccttgggatattgttaatcatcaagtgtcagagtgagTA-AAGGCCTGCAGGCCT-ATGGCT-CA-CTCTGTAC-AGGATGATTT----A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-T-TG--TT-AGG-AACCCCCATTT-TTTGA-AC-T-ATAGCT-TGCTTTATaacctcaagaatgttacctgcaaccctgatgccttctgattttt
gi|11 : -AAGGCCTGCAGGCTAGATG-CT-CA-C-TGGTAC-A-GATGATGTT---A---GTGT-TGCC-G-TTG-AAATTTTTTTACTCG-TTCATAGAACTG--TT-ATG-A-----CA--T--TTG--AC-TAATTAGT-TGTTTA
gi|12 : tagTA-AAGGC-TGCAGGCCTAATGG-T-CA-C-CTTGAC-A-GATGATTTA-------GTGT-TGCA-A-TTG-ATAA---TTTACTCGATTGATAG-TCTG--TT-ATG-A-----CA--TGATTGA-ACTT-ATTAGT-TGTTta
gi|13 : gAC-A-GATGATTTA-------GTGT-TGCA-AATTG-ATA-TTTTTAACTCG-TTGATAT-TCT---TT-ATGAA-----CA--T-TTTGACAC-T-AT-AGTATGTTTAgta
gi|14 : gtaAAGT-TAATTAATTTCGCGAGA-TCTATGTTAACGGTATCCAAAG---CGGAATACACCCATGATGGCTCACCTACACAGACAAAt
gi|15 : cagA-AAGGCTAGCAGGCCTAA-GGCT-CA---ATGTAC-AGGACGGATTA---ACCTGTGTGTGCACA-TTA-GTAATCTTT
gi|16 : atgAAAACATTTTGATAAGACACATTGAACAAAACGTTGGGAATTTTTATTT-TATCTATCTAAGCGTATCATA-
gi|17 : GT-TGCA-A-TTG-ATAATTTT--ACTCG-TT-ATAT-T-TG--TT-ATG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTT
gi|18 : -TTG-ATAATTTTTTACTCG-TTGATAT-TCTGAACT--TG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTTTAat
gi|19 : TTAAAACGAATATCA---CAAAAGTTGTT-AGTTTTCCAAAATTGATCTA------ACCGAA-----TCAAt
gi|2 : aaTGATAAAAAATATATAAAACAAAAGTTGTAAA-GTTT-ACCAGA-TGTT-TCGA-ACGATAA----TAATAGTTGGGCCTAT--GCCTTATTGG-CGTC-ACCTGTACAGACA------GATTTAAATCTCGCTATTCC-TTCGTAAATTATTGTCCTTGGACATTCAATATAAA-ATATATCTTTTATGGAAATAATTTT--G--TATAAACCG-TATATTTTAAAAG---T---TTA-----CC--AT-------GATATTAT-CGAACCATATCAAGAAA--TTGACC-AT-T-GGGCTTTATGGC----T-TTCTT-TATA-------CGA--GATTTGTATA-TCGCTATT-C
gi|20 : attcaattattttttaG-A-----CA--T-ATTGA-AC-A-ACA-----GTTTAATTTCACGAGA-TCTATATTA-CGTTATAAAAAATctttgcctaattctgtgattttaagggcatttt
gi|22 : AACCATATCAAGATATCTAGGCCACA---GTGCCTCATGGC----G-CAC-C-AGT
gi|23 : AGG-TGTTTAATTTCACGAGA-TCTATATTA-CATTATAAAAA
gi|3 : ACAAAAATCTTTTACGTTT-ACCAAAAT-CT-TCTGTAACATATTTCTCAAGAAAT---TCCATGGGCCTCA-TGATC-TC-ACCTGT-CGGACACTTTCTGATATCGTCTTTCGTACT-C-TTT----ACCCC----CCCG------------AAAGACAT-TTTGTT----AAAC-ATATTCGAACCA-AAA--G-T-TTTTG----AG--TTAACTGAGCGAGCTAGAG-------GATACTATACGAAC----TCAAGATA--GAGACC-CACC-AAGCC-CATGCC----T-CCCAC-TGTA-------C-AACGAT
gi|3 : GGGCCTCATGATCTCACCTGT-CGGACACTTTCTGATATCGTCTTTCGTA-CTCT--TTACCCCCCCGAAAGACATTTTGTT-AAACATAT-TCGAACCAAAAGTTTTTGAGTTAACTGAG--CGAGCTAGAGGATACTATACGAACTCAAGATAGAGACCCACCAAGCC-CATGCCTCCCACTGTAC-AACGAT
gi|4 : acaaaaatcttttacgtttaccaaaatcttctgtaacatatttctcaagaaattccat-C-TCGACCT-TAATGACC------AATTTAACATT-AATACT-TATTTATAAATCTCTA--CTCG------------AA------------TA-G---AT-ATGTA--A--CA-AAA--GCT-TG-TT----AGGATT---TTA-----CT---T-------GATCCTAT-CTAACTGTATCAAGATA--TGGGTC-CA-TGGGGCCCCATGGCAGCGTGCAC-CTTGTAGCGTTAGCAAACGATTTT-GTGTTTGCTATTACAAAAATCATATCTTTAC
gi|5 : A-AAGGCCTGCAACTCTTATGGTT-CA-C-CTGTAC-A-GACGA-TTA---A---GTAT-TACA-A-AT--ATAA
gi|5 : aA---A---GTAT-GAAA-A-CTG-ATAAATTTTTACTCG-TAAATGA-TCTG--TT-AAA-G-----GA--T-ATTGA-AC---ACATGT-TGTTCAATTTAGCGAGATTTTTTTTTG-CGATATAaatggcgaagtaacaaagtatgaaaactgataaatttttactcgtaaatgatctgttaaaggatattgaacacatgttgttcaatttagcgagatttttttttgcgatatatg
gi|6 : aaaaggcctgcaactcttatggttcacctgtacagacgattaagtattacaaatataaaatggcgaagtaacaGT---GGGCCCTCA-TG-C-TCTATCAAACCGTATCATATAAGGCCTGCAGGCTTA-TGGCTTCAGC-CTGTACTA-GATGATTTA---A---GTGTCTGCA-AATTGCATAATTTTTT-CTCG-TTGATAT-TCTG--TTAATG-A-----CA--T-TTTGA-AC-A-ATAtg
gi|7 : AT-AT-TT--AG-CA-GAA--G-T-TGCTT----AA--AT---CTA-----CT--ACATTTGTAGAT-TTAT-CTAACTGTATCAAGATA--TAAGCT-TG-T-GCGCCTCATTGC----T-CAC-G-TACA-------TGAATGAGTTG-GTG-TCGCTATT-Cgtgtgt
gi|8 : gataaaggttttatcAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTT
gi|9 : ataAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTTata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCTGTGACAGACCTATTAAAATATAAAATGGCGAAGCAACAAAGCATGAAA
Alignments
lowQualScore : 1 1 111111 1 2222 1111 11 1 1 1 1 3333333 1111 22222 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 111111 111111 111 2222222 111 1 1 22222 1 1 11 1 333333333 1 2222 2 333333 33333 1 1 1 1 1 222 222222 1 1111111 11111 111 111
lowQualScore : 0 6 0 6 0 6 7 7 8 1 1 3 3 888888 3 44 8888 2222 00 3 0 0 0 2 333 5555555 22 4444 33333 7 1 7777 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 8 0 7 99 666666 1 1 555555 666 6666666 6 0 000 0 0 1 77777 5 1 5 1 1 88 1 5 666666666 5 7 0 7 4444 0 6 0 7 888888 33333 5 5 1 1 5 5 1 5 333 444444 5 1 6 5 888 5 0 0 7777777 8 4 7 3 4 1 4 1 66 4 4 00000 55 88 4 444 9 3 8 8 1 333 1 22 1 1 1 1
lowQualScore : . . . . . . . . . . . . . ...... . .. .... .... .. . . . . . ... ....... .. .... ..... . . .... ................................................................................................. . . . . .. ...... . . ...... ... ....... . . ... . . . ..... . . . . . .. . . ......... . . . . .... . . . . ...... ..... . . . . . . . . ... ...... . . . . ... . . . ....... . . . . . . . . .. . . ..... .. .. . ... . . . . . ... . .. . . . .
lowQualScore : 7 7 7 7 7 7 3 3 8 0 0 3 3 000000 3 33 3333 3333 33 3 0 0 0 5 888 2222222 00 8888 88888 0 0 8888 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 0 6 8 22 333333 0 7 888888 888 0000000 4 8 555 0 0 0 00000 5 0 5 0 0 00 0 5 000000000 0 3 7 3 0000 7 7 7 3 333333 33333 5 5 0 0 5 0 0 5 333 333333 0 7 6 7 666 0 0 4 4444444 0 0 3 6 4 9 4 1 11 4 0 00000 55 99 0 000 1 6 0 0 0 333 0 00 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCA-TGG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--AC-------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTNATGGCT-CA-C-CTGTAC-A-GACGATTTA---A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
Reference ( family-1596 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCA-TGG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--AC-------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTNATGGCT-CA-C-CTGTAC-A-GACGATTTA---A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
gi|1 : AACCCTATCTGTCCAAGGCCCACAGGCCTCATGGCTC-ACCTGTACGGAT----------GATTTTAA-AA--GG----TCTTTACTCAAAAGCATTTTGTTAAGAC-ATATAAAACAAAAGTTGTTTA-GTTTCACTAGT-T-TTATCTA-ACTGTAT----CAAGATAAAGGCCCACGAGCCTCA-TGG-C-TC-ACCTGTATGGACA-------ATTTAGGGT-CAATA-----TTTATAACTCGCTA--CTTG------------AAA-ACAT-TTTGTTA-AAAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--A--------GAT-CTAT-CTAACAGTATCAATATA--TAGGTC-CA-T-GGGCCTCATGGC----T-CAC-C-TTTA-------CAGACAATTTA-TTG-TTGCTATT-CATAAATC-----TTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGG-CTCACCAGTACTGATGATTT--AATGTTACTATTTATAACTCTAATG-----CTTGAAA-ACATTTTATTAAAACATTTATTA---CAAAAGTCGTTTAGTTTTCCAAAATCGATCTG------ACCGTA-----TCAAGATGAAGACTC-CCGGGCCTCATGGCTCAC-CTGTATGGAAGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTAAAC-AAATGT---GAACTTTTA-TGAGATCTATTTAACGGTATCATG-AAGGCCTGCAAACTTTTTGGCT-CA-C-TTGTAC-A-GACGATTTAAATA---GCAT-TGCA-A-GTG-ATAATTTTTTACTCG-TAAATAT-TCTG--TT-AAG-A-----CA--T-ATTGA-AC---ATAAGT-TGTTTAATTTTACGAGA-TCTATATTA-CGTTATAAAAAATATCTGCCCACACGCCTCATGGCTCATATACACAGACAAA
gi|10 : gacccacgattgatgatcaatgcttttcattttgatgttgttcaattgaaaccttgggatattgttaatcatcaagtgtcagagtgagTA-AAGGCCTGCAGGCCT-ATGGCT-CA-CTCTGTAC-AGGATGATTT----A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-T-TG--TT-AGG-AACCCCCATTT-TTTGA-AC-T-ATAGCT-TGCTTTATaacctcaagaatgttacctgcaaccctgatgccttctgattttt
gi|11 : -AAGGCCTGCAGGCTAGATG-CT-CA-C-TGGTAC-A-GATGATGTT---A---GTGT-TGCC-G-TTG-AAATTTTTTTACTCG-TTCATAGAACTG--TT-ATG-A-----CA--T--TTG--AC-TAATTAGT-TGTTTA
gi|12 : tagTA-AAGGC-TGCAGGCCTAATGG-T-CA-C-CTTGAC-A-GATGATTTA-------GTGT-TGCA-A-TTG-ATAA---TTTACTCGATTGATAG-TCTG--TT-ATG-A-----CA--TGATTGA-ACTT-ATTAGT-TGTTta
gi|13 : gAC-A-GATGATTTA-------GTGT-TGCA-AATTG-ATA-TTTTTAACTCG-TTGATAT-TCT---TT-ATGAA-----CA--T-TTTGACAC-T-AT-AGTATGTTTAgta
gi|14 : gtaAAGT-TAATTAATTTCGCGAGA-TCTATGTTAACGGTATCCAAAG---CGGAATACACCCATGATGGCTCACCTACACAGACAAAt
gi|15 : cagA-AAGGCTAGCAGGCCTAA-GGCT-CA---ATGTAC-AGGACGGATTA---ACCTGTGTGTGCACA-TTA-GTAATCTTT
gi|16 : atgAAAACATTTTGATAAGACACATTGAACAAAACGTTGGGAATTTTTATTT-TATCTATCTAAGCGTATCATA-
gi|17 : GT-TGCA-A-TTG-ATAATTTT--ACTCG-TT-ATAT-T-TG--TT-ATG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTT
gi|18 : -TTG-ATAATTTTTTACTCG-TTGATAT-TCTGAACT--TG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTTTAat
gi|19 : TTAAAACGAATATCA---CAAAAGTTGTT-AGTTTTCCAAAATTGATCTA------ACCGAA-----TCAAt
gi|2 : aaTGATAAAAAATATATAAAACAAAAGTTGTAAA-GTTT-ACCAGA-TGTT-TCGA-ACGATAA----TAATAGTTGGGCCTAT--GCCTTATTGG-CGTC-ACCTGTACAGACA------GATTTAAATCTCGCTATTCC-TTCGTAAATTATTGTCCTTGGACATTCAATATAAA-ATATATCTTTTATGGAAATAATTTT--G--TATAAACCG-TATATTTTAAAAG---T---TTA-----CC--AT-------GATATTAT-CGAACCATATCAAGAAA--TTGACC-AT-T-GGGCTTTATGGC----T-TTCTT-TATA-------CGA--GATTTGTATA-TCGCTATT-C
gi|20 : attcaattattttttaG-A-----CA--T-ATTGA-AC-A-ACA-----GTTTAATTTCACGAGA-TCTATATTA-CGTTATAAAAAATctttgcctaattctgtgattttaagggcatttt
gi|22 : AACCATATCAAGATATCTAGGCCACA---GTGCCTCATGGC----G-CAC-C-AGT
gi|23 : AGG-TGTTTAATTTCACGAGA-TCTATATTA-CATTATAAAAA
gi|3 : ACAAAAATCTTTTACGTTT-ACCAAAAT-CT-TCTGTAACATATTTCTCAAGAAAT---TCCATGGGCCTCA-TGATC-TC-ACCTGT-CGGACACTTTCTGATATCGTCTTTCGTACT-C-TTT----ACCCC----CCCG------------AAAGACAT-TTTGTT----AAAC-ATATTCGAACCA-AAA--G-T-TTTTG----AG--TTAACTGAGCGAGCTAGAG-------GATACTATACGAAC----TCAAGATA--GAGACC-CACC-AAGCC-CATGCC----T-CCCAC-TGTA-------C-AACGAT
gi|3 : GGGCCTCATGATCTCACCTGT-CGGACACTTTCTGATATCGTCTTTCGTA-CTCT--TTACCCCCCCGAAAGACATTTTGTT-AAACATAT-TCGAACCAAAAGTTTTTGAGTTAACTGAG--CGAGCTAGAGGATACTATACGAACTCAAGATAGAGACCCACCAAGCC-CATGCCTCCCACTGTAC-AACGAT
gi|4 : acaaaaatcttttacgtttaccaaaatcttctgtaacatatttctcaagaaattccat-C-TCGACCT-TAATGACC------AATTTAACATT-AATACT-TATTTATAAATCTCTA--CTCG------------AA------------TA-G---AT-ATGTA--A--CA-AAA--GCT-TG-TT----AGGATT---TTA-----CT---T-------GATCCTAT-CTAACTGTATCAAGATA--TGGGTC-CA-TGGGGCCCCATGGCAGCGTGCAC-CTTGTAGCGTTAGCAAACGATTTT-GTGTTTGCTATTACAAAAATCATATCTTTAC
gi|5 : A-AAGGCCTGCAACTCTTATGGTT-CA-C-CTGTAC-A-GACGA-TTA---A---GTAT-TACA-A-AT--ATAA
gi|5 : aA---A---GTAT-GAAA-A-CTG-ATAAATTTTTACTCG-TAAATGA-TCTG--TT-AAA-G-----GA--T-ATTGA-AC---ACATGT-TGTTCAATTTAGCGAGATTTTTTTTTG-CGATATAaatggcgaagtaacaaagtatgaaaactgataaatttttactcgtaaatgatctgttaaaggatattgaacacatgttgttcaatttagcgagatttttttttgcgatatatg
gi|6 : aaaaggcctgcaactcttatggttcacctgtacagacgattaagtattacaaatataaaatggcgaagtaacaGT---GGGCCCTCA-TG-C-TCTATCAAACCGTATCATATAAGGCCTGCAGGC-TTATGGCTTCAGC-CTGTACTA-GATGATTTA---A---GTGTCTGCA-AATTGCATAATTTTTT-CTCG-TTGATAT-TCTG--TTAATG-A-----CA--T-TTTGA-AC-A-ATAtg
gi|7 : AT-AT-TT--AG-CA-GAA--G-T-TGCTT----AA--AT---CTA-----CT--ACATTTGTAGAT-TTAT-CTAACTGTATCAAGATA--TAAGCT-TG-T-GCGCCTCATTGC----T-CAC-G-TACA-------TGAATGAGTTG-GTG-TCGCTATT-Cgtgtgt
gi|8 : gataaaggttttatcAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTT
gi|9 : ataAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTTata
blockSeqs : C C C T A T A A C . TGTT T GA TTCT GTTG GG T T G G G ACA CTTTCTG AT TCGC TTCC G A TGTC GACATTCAATATAAAATATATCTTTTATGGAAATAATTTTGTATAAACCGTATATTTTAAAAGTTTACCAT A A C TC CACC G T AGCGTG TT GCGTTAG G GTA T A A ATATC T T . G C CT T . TTACCCC G A A GAAC G A GAGGAT CGAAC A . C C A . C A TGG TTTTA T C G T CT T G ACCT G C A C A G A C AA A A ACCCC TT GA C TA A A T A G . G AA C A G C
blockSeqs : C C C T A G C T . . ATCT . CA . AAT . . . . . G AAT G TC TTCG CTTA A C TA AAAGACATTTTGTTAAACATATTCGAACCAAAAGTTTTTGAGTTAACTGAGCGAGCTAGAG A . C . CATG T T T AC . A TG . . . . A . . . . . TGC . T A . GC . G A C . A . . C . C . . . . . T . TT T . . . T
blockSeqs : G C T . . . . CG A CA TAA CTC . T . AATAGATATGTAACAAAAGCTTGTTAGGATTTTACTT C . T . ATT A C G CT . G GG . . . C A . C . . A . . . . . G . C . . . . . T . T T . . . T
blockSeqs : . . T . ACA G T T C . . . C T . C . . A . . . . . G . C . . . . . T . T A . . . A
blockSeqs : . . TGT C . T G . C T . C . . A . . . . . G . C . . . . . T . T A .
blockSeqs : . . . . . . . A . . . . . A . C . . . . . A . T A .
blockSeqs : . . . . . . . . . G . . . . . . . A . A A .
blockSeqs : . . . . . . . . . . . . . . T . A . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : NT* A****** T**
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCA-TGG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--AC-------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CAC-C-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTNATGGCT-CA-C-CTGTAC-A-GACGATTTA---A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCA-TGG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--AC-------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CACNT-TGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTNATGGCT-CA-C-CTGTAC-A-GACGATTTAA------GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-ACT--ATAAGT-TGTTTAATTTCGCGAGA-TCTATATTA-CGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCTGTGACAGACCTATTAAAATATAAAATGGCGAAGCAACAAAGCATGAAA
Alignments
lowQualScore : 1 1 111111 1 2222 1111 1 1 1 1 1 3333333 1111 22222 1111 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1 111111 111111 2222222 111 1 1 22222 1 1 11 1 333333333 1 2222 2 333333 33333 1 1 1 1 1 222 222222 1 1111111 11111 111 111
lowQualScore : 0 6 0 6 0 6 7 7 8 1 1 3 3 888888 3 44 8888 2222 2 3 0 0 0 2 333 5555555 22 4444 33333 7 1 7777 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5 8 0 7 99 666666 1 1 555555 44 6 6666666 6 0 000 0 0 1 77777 5 1 5 1 1 88 1 5 666666666 5 7 0 7 4444 0 6 0 7 888888 33333 5 5 1 1 5 5 1 5 333 444444 5 1 6 5 888 5 0 0 7777777 8 4 7 3 4 1 4 1 66 4 4 00000 55 88 4 444 9 3 8 8 1 333 1 22 1 1 1 1
lowQualScore : . . . . . . . . . . . . . ...... . .. .... .... . . . . . . ... ....... .. .... ..... . . .... ................................................................................................. . . . . .. ...... . . ...... .. . ....... . . ... . . . ..... . . . . . .. . . ......... . . . . .... . . . . ...... ..... . . . . . . . . ... ...... . . . . ... . . . ....... . . . . . . . . .. . . ..... .. .. . ... . . . . . ... . .. . . . .
lowQualScore : 7 7 7 7 7 7 3 3 8 0 0 3 3 000000 3 33 3333 3333 0 3 0 0 0 5 888 2222222 00 8888 88888 0 0 8888 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 0 6 8 22 333333 0 7 888888 88 4 0000000 4 8 555 0 0 0 00000 5 0 5 0 0 00 0 5 000000000 0 3 7 3 0000 7 7 7 3 333333 33333 5 5 0 0 5 0 0 5 333 333333 0 7 6 7 666 0 0 4 4444444 0 0 3 6 4 9 4 1 11 4 0 00000 55 99 0 000 1 6 0 0 0 333 0 00 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCACGGGCCTCAT-GG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--AC-------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CACNTTGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTNATGGCT-CA-C-CTGTAC-A-GACGATTTA---A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATT-ACGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
Reference ( family-1596 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCCTATCTGTCCAAGGCCCGCAGGCCTAATTGCTCCACCTGTACGGATCGTAAATTTCGGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATNTNGAACAAAAGTTGTTTA-GTTT-ACCAGA-T-TT-TCTA-ACCGTAT----CAAGANATGGGCCCATGGGCCTCAT-GG-C-TC-ACCTGTACGGACA------GATTTAGNNTTCGATACT-C-TTTATAAATCNCTA--CTCG------------AAA-ACAT-TTTGTTA-GGAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--AC-------GATACTAT-CTAACCGTATCAAGATA--TAGGCC-CA-T-GGGCCTCATGGC----T-CACNTTGTA-------CGAACGATTTG-GTG-TCGCTATT-CANAAATCATATCTTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGGTCTCACCNGTACNGACGNTTTCTGATGTCGCCNTTCGTAACTCTAATNACCCCCCCGAAAGACATTTTGTTAAAACGTATATCG---CAAAAGTCGTT-AGTTTTCCGAAATCGATCTA------ACCGTA-----TCAAGATGGAGACCCACCGGGCCTCATGNCTCNCACTGTACGGANGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTGAACAAAACGT---GAACTTTTA-TG-NATCTATCTAACCGTATCATA-AAGGCCTGCAGGCCTNATGGCT-CA-C-CTGTAC-A-GACGATTTA---A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-TCTG--TT-ATG-A-----CA--T-NTTGA-AC-T-ATAAGT-TGTTTAATTTCGCGAGA-TCTATATT-ACGTTATAAAAAATATCNGNNCACACNCNTNATGGCTCACNTACACAGACAAA
gi|1 : AACCCTATCTGTCCAAGGCCCACAGGCCTCATGGCTC-ACCTGTACGGAT----------GATTTTAA-AA--GG----TCTTTACTCAAAAGCATTTTGTTAAGAC-ATATAAAACAAAAGTTGTTTA-GTTTCACTAGT-T-TTATCTA-ACTGTAT----CAAGATAAAGGCCCACGAGCCTCAT-GG-C-TC-ACCTGTATGGACA-------ATTTAGGGT-CAATA-----TTTATAACTCGCTA--CTTG------------AAA-ACAT-TTTGTTA-AAAAAT-ATATT--A--CA-AAA--G-T-TGCTT----AG--TT---TTA-----CT--A--------GAT-CTAT-CTAACAGTATCAATATA--TAGGTC-CA-T-GGGCCTCATGGC----T-CACCTT-TA-------CAGACAATTTA-TTG-TTGCTATT-CATAAATC-----TTTACACGAAAACATTTTGTTGAGACTTGTTTAGTTTTACTAGATCTATATAACTGTATCAAGATATAGGCCATGCAGTGGGCGGGCCTCATGG-CTCACCAGTACTGATGATTT--AATGTTACTATTTATAACTCTAATG-----CTTGAAA-ACATTTTATTAAAACATTTATTA---CAAAAGTCGTTTAGTTTTCCAAAATCGATCTG------ACCGTA-----TCAAGATGAAGACTC-CCGGGCCTCATGGCTCAC-CTGTATGGAAGATTTAGTGTCACTATTCATAAATCCGTACTTGAAAACATTTTGATAAGACACATTAAAC-AAATGT---GAACTTTTA-TGAGATCTATTTAACGGTATCATG-AAGGCCTGCAAACTTTTTGGCT-CA-C-TTGTAC-A-GACGATTTAAATA---GCAT-TGCA-A-GTG-ATAATTTTTTACTCG-TAAATAT-TCTG--TT-AAG-A-----CA--T-ATTGA-AC---ATAAGT-TGTTTAATTTTACGAGA-TCTATATT-ACGTTATAAAAAATATCTGCCCACACGCCTCATGGCTCATATACACAGACAAA
gi|10 : gacccacgattgatgatcaatgcttttcattttgatgttgttcaattgaaaccttgggatattgttaatcatcaagtgtcagagtgagTA-AAGGCCTGCAGGCCT-ATGGCT-CA-CTCTGTAC-AGGATGATTT----A---GTGT-TGCA-A-TTG-ATAATTTTTTACTCG-TTGATAT-T-TG--TT-AGG-AACCCCCATTT-TTTGA-AC-T-ATAGCT-TGCTTTATaacctcaagaatgttacctgcaaccctgatgccttctgattttt
gi|11 : -AAGGCCTGCAGGCTAGATG-CT-CA-C-TGGTAC-A-GATGATGTT---A---GTGT-TGCC-G-TTG-AAATTTTTTTACTCG-TTCATAGAACTG--TT-ATG-A-----CA--T--TTG--AC-TAATTAGT-TGTTTA
gi|12 : tagTA-AAGGC-TGCAGGCCTAATGG-T-CA-C-CTTGAC-A-GATGATTTA-------GTGT-TGCA-A-TTG-ATAA---TTTACTCGATTGATAG-TCTG--TT-ATG-A-----CA--TGATTGA-ACTT-ATTAGT-TGTTta
gi|13 : gAC-A-GATGATTTA-------GTGT-TGCA-AATTG-ATA-TTTTTAACTCG-TTGATAT-TCT---TT-ATGAA-----CA--T-TTTGACAC-T-AT-AGTATGTTTAgta
gi|14 : gtaAAGT-TAATTAATTTCGCGAGA-TCTATGTTAACGGTATCCAAAG---CGGAATACACCCATGATGGCTCACCTACACAGACAAAt
gi|15 : cagA-AAGGCTAGCAGGCCTAA-GGCT-CA---ATGTAC-AGGACGGATTA---ACCTGTGTGTGCACA-TTA-GTAATCTTT
gi|16 : atgAAAACATTTTGATAAGACACATTGAACAAAACGTTGGGAATTTTTATTT-TATCTATCTAAGCGTATCATA-
gi|17 : GT-TGCA-A-TTG-ATAATTTT--ACTCG-TT-ATAT-T-TG--TT-ATG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTT
gi|18 : -TTG-ATAATTTTTTACTCG-TTGATAT-TCTGAACT--TG-A-----CA--T-TTTGA-AC-T-AT-AGT-TGTTTAat
gi|19 : TTAAAACGAATATCA---CAAAAGTTGTT-AGTTTTCCAAAATTGATCTA------ACCGAA-----TCAAt
gi|2 : aaTGATAAAAAATATATAAAACAAAAGTTGTAAA-GTTT-ACCAGA-TGTT-TCGA-ACGATAA----TAATAGTTGGGCCTATG--CCTTATTGG-CGTC-ACCTGTACAGACA------GATTTAAATCTCGCTATTCC-TTCGTAAATTATTGTCCTTGGACATTCAATATAAA-ATATATCTTTTATGGAAATAATTTT--G--TATAAACCG-TATATTTTAAAAG---T---TTA-----CC--AT-------GATATTAT-CGAACCATATCAAGAAA--TTGACC-AT-T-GGGCTTTATGGC----T-TTCTTTATA-------CGA--GATTTGTATA-TCGCTATT-C
gi|20 : attcaattattttttaG-A-----CA--T-ATTGA-AC-A-ACA-----GTTTAATTTCACGAGA-TCTATATT-ACGTTATAAAAAATctttgcctaattctgtgattttaagggcatttt
gi|22 : AACCATATCAAGATATCTAGGCCACA---GTGCCTCATGGC----G-CAC
gi|23 : AGG-TGTTTAATTTCACGAGA-TCTATATT-ACATTATAAAAAcagt
gi|3 : ACAAAAATCTTTTACGTTT-ACCAAAAT-CT-TCTGTAACATATTTCTCAAGAAAT---TCCATGGGCCTCAT-GATC-TC-ACCTGT-CGGACACTTTCTGATATCGTCTTTCGTACT-C-TTT----ACCCC----CCCG------------AAAGACAT-TTTGTT----AAAC-ATATTCGAACCA-AAA--G-T-TTTTG----AG--TTAACTGAGCGAGCTAGAG-------GATACTATACGAAC----TCAAGATA--GAGACC-CACC-AAGCC-CATGCC----T-CCCACTGTA-------C-AACGAT
gi|3 : GGGCCTCATGATCTCACCTGT-CGGACACTTTCTGATATCGTCTTTCGTA-CTCT--TTACCCCCCCGAAAGACATTTTGTT-AAACATAT-TCGAACCAAAAGTTTTTGAGTTAACTGAG--CGAGCTAGAGGATACTATACGAACTCAAGATAGAGACCCACCAAGCC-CATGCCTCCCACTGTAC-AACGAT
gi|4 : acaaaaatcttttacgtttaccaaaatcttctgtaacatatttctcaagaaattccat-C-TCGACCT-TAATGACC------AATTTAACATT-AATACT-TATTTATAAATCTCTA--CTCG------------AA------------TA-G---AT-ATGTA--A--CA-AAA--GCT-TG-TT----AGGATT---TTA-----CT---T-------GATCCTAT-CTAACTGTATCAAGATA--TGGGTC-CA-TGGGGCCCCATGGCAGCGTGCACCTTGTAGCGTTAGCAAACGATTTT-GTGTTTGCTATTACAAAAATCATATCTTTAC
gi|5 : A-AAGGCCTGCAACTCTTATGGTT-CA-C-CTGTAC-A-GACGA-TTA---A---GTAT-TACA-A-AT--ATAA
gi|5 : aA---A---GTAT-GAAA-A-CTG-ATAAATTTTTACTCG-TAAATGA-TCTG--TT-AAA-G-----GA--T-ATTGA-AC---ACATGT-TGTTCAATTTAGCGAGATTTTTTTTT-GCGATATAaatggcgaagtaacaaagtatgaaaactgataaatttttactcgtaaatgatctgttaaaggatattgaacacatgttgttcaatttagcgagatttttttttgcgatatatg
gi|6 : aaaaggcctgcaactcttatggttcacctgtacagacgattaagtattacaaatataaaatggcgaagtaacaGT---GGGCCCTCA-TG-C-TCTATCAAACCGTATCATATAAGGCCTGCAGGC-TTATGGCTTCAGC-CTGTACTA-GATGATTTA---A---GTGTCTGCA-AATTGCATAATTTTTT-CTCG-TTGATAT-TCTG--TTAATG-A-----CA--T-TTTGA-AC-A-ATAtg
gi|7 : AT-AT-TT--AG-CA-GAA--G-T-TGCTT----AA--AT---CTA-----CT--ACATTTGTAGAT-TTAT-CTAACTGTATCAAGATA--TAAGCT-TG-T-GCGCCTCATTGC----T-CACG-TACA-------TGAATGAGTTG-GTG-TCGCTATT-Cgtgtgt
gi|8 : gataaaggttttatcAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTT
gi|9 : ataAAGGCCTGCAGGCCTAATTGCTCCACCTGTACAGATCGTAAATTTCAGTTTTAGCAATTGGATAATTTCAACTCGTTGATATCTGATTAAGACGATCTTGAACAAAAGTTGTTata
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TCTGTGACAGACCTATTAAAATATAAAATGGCGAAGCAACAAAGCATGAAA