lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    2222222222222222222222222222222222222222222222222222222222222222222222222222                                                                                                                                                                                                                                                                                                                                                                                                                                                                     1111111111111                                                        
lowQualScore                  :               2222222222222222222      2         555555555555555555555555                    2       33333                        22222222                         22222222    111111  111111           777777777777777777777777777777777777777777777777777777      33      1                            4444444444         22222222        11   1                 1111           444444444         1      222222     222                  11     22      1111    22           33      333333           2        22222       11    6666666666666666666666         1     7777777777777     3333                    99999999999999999999999999             33         22       222      1   6666666666     111  1     1                2    2222      11             1   1   1  33           222           44      1     222      1    444      1    55555555555555       1      77777777777     4             4         11           666       55           777        999999        4              5555555555555555555555555555555555555555555555555555555555555555555555555555      4444444                    5555555                     222        4     4     55       4     55555                     1      4            33                               1      4     22                             8888888                   4              55        4            4                4     55            4          4            55                       4                                          55                        4     4     0000000000000               4                          22            
lowQualScore                  :               0000000000000000000      5  3  3   000000000000000000000000      2 5 66 5  2   7  2  2 22222 2  2  2    5 444   66  33333333   2 33    8    6  7777  22222222  3 111111  444444  55       555555555555555555555555555555555555555555555555555555      22      4    7 4   777  0         4  4444444444  4   4  99999999   66   99 4 0          6      3333           444444444     9   0   8  333333     333             88   11     33      5555    44 3         11      222222         7 3      7 11111       88    2222222222222222222222         3     9999999999999     2222           1  6     99999999999999999999999999             11   7     00       999   7  3   6666666666  7  999  3     3     6          3    0000    4 33  2    2     5   0   0  00         3 111           88      0     111      0 3  666      0    77777777777777   6 6 7      11111111111     0             0         22           111       55           000        222222     6  0              7777777777777777777777777777777777777777777777777777777777777777777777777777      9999999                  6 6666666                     555        0     0     55 6     0     33333                     7 6    0            44                               7      0     33                             1111111                   0     6        55        0            0                0     55            0          0            55                       0                                       6  55                6       0     0     2222222222222               0                          33            
lowQualScore                  :               ...................      .  .  .   ........................      . . .. .  .   .  .  . ..... .  .  .    . ...   ..  ........   . ..    .    .  ....  ........  . ......  ......  ..       ......................................................      ..      .    . .   ...  .         .  ..........  .   .  ........   ..   .. . .          .      ....           .........     .   .   .  ......     ...             ..   ..     ..      ....    .. .         ..      ......         . .      . .....       ..    ......................         .     .............     ....           .  .     ..........................             ..   .     ..       ...   .  .   ..........  .  ...  .     .     .          .    ....    . ..  .    .     .   .   .  ..         . ...           ..      .     ...      . .  ...      .    ..............   . . .      ...........     .             .         ..           ...       ..           ...        ......     .  .              ............................................................................      .......                  . .......                     ...        .     .     .. .     .     .....                     . .    .            ..                               .      .     ..                             .......                   .     .        ..        .            .                .     ..            .          .            ..                       .                                       .  ..                .       .     .     .............               .                          ..            
lowQualScore                  :               9999999999999999999      8  3  3   333333333333333333333333      9 7 88 7  9   5  6  9 11111 9  9  9    7 555   88  44444444   9 99    6    2  7777  33333333  6 888888  111111  00       777777777777777777777777777777777777777777777777777777      55      5    3 0   000  3         0  0000000000  0   0  22222222   11   44 4 0          0      3333           000000000     8   6   0  000000     000             88   00     00      2222    88 2         00      222222         3 7      3 00000       33    7777777777777777777777         3     3333333333333     0000           0  7     33333333333333333333333333             33   3     77       333   3  3   7777777777  3  333  3     3     7          3    8888    0 00  0    5     0   0   0  00         2 000           88      0     555      0 2  555      0    33333333333333   0 0 0      00000000000     0             0         00           000       00           000        000000     0  0              0000000000000000000000000000000000000000000000000000000000000000000000000000      0000000                  0 0000000                     000        0     0     00 0     0     00000                     0 0    0            00                               0      0     00                             0000000                   0     0        00        0            0                0     00            0          0            00                       0                                       0  00                0       0     0     0000000000000               0                          00            
consensus                     :     TTTTTTTTAT---------A-AAT-----TCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AG-ACAT-A-A-AGA--CA---C-T-CAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACT-GC--C------T------TGCTG----T-------GCAGCA-A-T-----T--ATAATT--AAACAG-AAAA-G-AAA---ATGATAAACAGT-AT--T-T-C---TA-TTT-AGTT----TAATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCCA-G--GCT-TTATCAAAAACTG-TGC-----ATTTTAA-GTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTT-AACTTCAAATGAACATAGTAA-T--CCTATAAGGTT-AGGTTCTTTCACCTCTGCAT--CAAACAGATAAAGA-TGTATTGTTT-AACATATAA-AATTA-TAGAGT--A---GCTTTGCT-ATTAATAGACAGTGGAATTT-C-------AN--------AT-A---ATATTCGACACATT-AAAACCAACT-TTTCTGA-A-TTTTTC-TGTATATAT----GAAGA-T-CA-AATCA-TTCCACAATGTTTGGGTTTTT---AACACNTN-AAATAAAGACGTGTATC-ATT-GTC-TCAACATTATTT-GTACAAAATCTA--CAACAG-TCATTAGNTTTTAA-CATTA--TTTTTT-TCAAA--GTA-TATCC--ACAGGAATTGATTC-GT-ATAAAATTCTAA-CTGTAACCATTGA-CAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATACT---TGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTCGTAT--TCCACTTTTTTTTTTGCCCA-TGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTC-AAAAATACAGGCATACATGGAATTAATATTTGTTTTAATTTGAA--TTCTATC-AATAGTTTATTACTTCTTAAATATGTTGACAATTGCAG-AATAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAA
Reference ( gi|1 )            :     TTTTTTTTAT---------A-AAT-----TCATTTTAT-TT-TTG-TA-A------CA--------CCAAGAGAC-A-C--T-CA-AACCATACA-A---A-T-AC-AG-ACAT-A-A-AGA--CA---A-T-AAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACT------------T------TGCTG---TT-------GCAGGA-A-T-----T--ATAATTTAAAACAG-AAAA-G-AAA---ATAATAAACAGT-AT--T-TCC---TA-TTT-AGTT----TCATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC--G--GCC-TTATCAAAAACTG-TAT-----ATTTT-A-GTTTTTGAATTGC-AGCA--TATTT-ATCCACAAGAAATTTTAAACTTCAAATGAACATAGT-A-T--CCTATAAGGTTTAGGTTCTTTTACCTCTGCAT--CAAAAAAATAAAGA-TATATTGTTTTAACATATAA-AATTAATAAAATTAATAAGCTTTA-T-ATTAATAGACAATGGAATTT-C-------AC--------AT-A---ATATTTGACACATTAAAAACCAACT-TTTCTGA-GTTTTTTC-TGTAT-TATAATGGAAGACT-CA-AATCA-TTCCACAATGTTTGGGGTTTT---AACACATT-AAGTAAAGACATGGATC-ATT-GTCCTCAACATTATTTTGTACAAAATCTAACCAACAG-TCATTATTTTTTAA-CATTAAATTTTTT-TCAAAAAGTAATATCCCAACAAGGAATGATTCTGTTATAAA--TCTAAACTGTAACCATTGAACAGAAGAATCAGTAGTTGTTTTTGAAAACAAAATTTTAAAATACTCCTTGTACTGA---TA-TCACCCACATCCATATGGAGATA---TTCAGATCTTCCACTT--------GCCCAATGGAAGTTGGGATAT---CTTTTTCATTCAAAAATTGTAAAAATAATTT-TAGAA-ATTTTTCATGCAACAAAATA-GGTGCAAAAAATACAGGCATACATGGATTAAATATTTG-TTTAA-TTGAATGTCCTATCAAATAG-TTA-TACTTCTTAAATATGTTGACATTCGCAGAAATAATGCCATTTAATTTCATTACACATACACCTTGGAGATTGTAATAAGCG-TTGAAACTTTTCTAAGGTTAAGACGTTACAATCAGA-GTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTT-AATAAAGACTGGTTTTTCCAGCTATTTTA-ATATTAAAGAATTATACCA-CACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCTTT--CAAAATGCATTTTTTTTCCTTAAG-AAACA-TCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCATACACAGCAAAAAA
gi|13                         :     TTTTTTTTA-------------AT-----CCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AA-ACAT-A-A-AGA--CA---C-T-CAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACTTGCTAC------T------TGCTG----T-------GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---ATG--CAACGGT-AT--CGTCA---TA-T----GTT----T
gi|11                         :   atTTTTTTTTAT---------A-A-T-----TCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AG-ACAT-A-A-AGA--CA---C-TAAAAA-C--ATAC-AATT-CA----TT--------CT-C-A----CA------GT--GGTTACTTGCTAC------T------TGCTG----T-------GCAG---------------CAATTGAAAA-AG-AAAA-t
gi|7                          :  tttTTTTTTTTGG---------ATAAT-----TTATTT-AT-TT-TTG---------------------------------------A-AAC-ATACA-A-----T-AC-AA-TTAT-A-G-AGA--CA---C-T-CAAA-C--ATAC-AATT-CC----TTCGCCCGGCCT-C-A----CA------GT--GGTTAC-------------T------TGCTG----T-------GCAACA-ATT-----T--ATCATT--AAACAG-AAAA-ATAAA---AAAAAAAAGAGA-AT--T---C---CA-TTT-AG-T----TGATA--TACA-A-A-TCTGTCAAAATTGTTTTTTTACAACGTCATCCA-A--ACT-TTAT-GAGAACTG-TACGTGCAATTCA-A-GTTTTTGAATTGC-AGCATGTATTT-cttgttaaattaattttaaaaatgcaattcagtccaa
gi|9                          :     TTTTTTTTAT---------A-AATACTGTTCATTT-AT-TT-T-G-CATA------CA--------ACA-GAGAC-A-TCTT-CA-GAACAT-CA-A-----T-AC-AGGACAT-A-A-AGAG-CA---C-T-AAAAAC--ATAC-AATT-CA----TT--------CT-CCA----CA------GT--GGTTACT------------T------TGCTACTTTT-------GTGTG----T-----C--A-GATTTGAA-----AAAA-G-AAA---A
gi|15                         : atttTTTTTTTCAT---------A-A-T-----TCAATT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-AAC--T-CA-AAC-ATACA-A-----T-AC-AG-ACAT-A-A-AGA--CA---C-T-CAAA-C--ATAC-AATT-Ccttgtttaaattatatttttataaaagtatgtcaatttctagtctc
gi|14                         : aattTTTTTTTCAT---------A-AAT-----TCAAATAAT-TT-TTG-CA-A------CA--------C--AGAGAC-AAC--T-CA-AAC-ATACA-A-----T-AC-AG-ACATTA-A-AGAGGCA---C-T-CAAA-C--ATAC-AATT-Ca
gi|6                          :   ttTTTTTTTTATTCTTGTATGATAAT-----T-ATTTTTT-TT-TTG-CA-AGCATATCAAATACTATCAAAGAGAC-A-CA-T-CATAAACATACA-A---A-T-A--AA-ACAT-AGG-AGA--CA---C-T-AATA-C--ATGC-AAT
gi|2                          : tttttTTTTTTTAT---------A-AAT-----TCA-TTTAT-TTGTTGCCA-A------CA--------C--AGAGACAA-C--T-CA-AA-CATACG-A---ACT-AC-acagacattaaagacactcaaacatacaaattcccaattccccaccgccagtggttacttgctgtacagcacacttttgtataaattaacagaaaaggaaaacatgataaaagcataattcgtattttattcagtatacata
gi|5                          :      TTATTTTAT---------A-A-T-----TCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AA-ACAT-A-A-AGA--CA---T-T-CAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CAGTCACCGT--GGTTACTTGCTACTTGTACT------TGCTG----T-------GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---ATAATAAACAGT-AT--TCTACATGTA-TTT-AG-T----TAATA--TACA-A-A-TCAGTC-AAAATATTTTC---CAACCTCATCCA-G--GCT-TTATC-AAAACTG-TGC-----ATTTTAA-GTTTTTGAATTGC-AGCA--TATTT-CTCCACATGATATTTT-AACTTCAAATG-ACATAGTAA-T--CCTATAAGcttctccagtggttacttgctacttgctgctgcgcaatttataattaaacagaaaaagaaaataataaacagttattctattttagttaatatacaaattagtcaaaatattttcaacctcatcccaggctttatcaaaactggtatattttaagtttttgaattgccagcatattttctccacaagaaatttaacttcaaatgacatagtaatcctataaggttaggttcttactctgcatttcaaaacaataaagactgtattgtttaacatataaaagtatagaatgtatagctttactattaatatacaatggaatttccaccttaatattaatatttgacacataaaccaactcttctgacgttttctgttatatggagacttcagaatcaattccacaatgtttgggttttaacacatgaagtaaagacatggatccatttgtctcaacattatctgttacaaaatctacaacaggtcattagtttttaaacattattttttgtcaagtatatccacaggaattgattcgtataaaattctaactgtaaccattgacagaagaattggtagttgttttgaaacaaatttaaaatacttgtactgaaactaatcacctactccatatggagataatattcgtattccacttttttttttgcccatggaagttgggatattctctttttcatttaatttgcagaacatttttcatgcaacaaaacagggttcaaaaatacaggcatacatggaattaatatttgttttaatttgaattctatcaatagtttattacttcttaaatatgttgacaattgcagaataatgccattatatttcattacacatacaccttggagattgtattaagcgtttgaattttttctaaggttaagacgttacaatcagaggtcaaaaatcttgaacaattttaattctttttcatacattccttaaataaagactggttttccagctattttatatattagaattataccaccactggaatattttgaaaattgtttttgacatttggaagattctgacttgtcttcaaatacaaaaaccaagcattaaaaacatccttgccaaaatgcatttttttcccttaagaaaacattcttcaataaaatatctccaaaatcatataacttcataagaatatcatttccaagcacagcaaaaaa
gi|8                          :   ttaTTTTTCT-T---------A-A-------TCATTT-ATATT-TTG-CA-A-------A--------C--AGAGA--A-C--TTCA-AAC-AT-CACA---A-T-AC-AG-ACAT-A-AGAGA--CACAAA-A-AAAA-TTTATACCAATTTCC----TT--------CT-C-A----CAC-----GTTGAGTTACT------------T-------GCTA---CTTGCTTGAGCAGCA-A-T-----TTTATAAT--GAAACAG-AAAA-A-GAA---ATCATAAACAGT-ATAAT-T-C---TA-TTT-AGCT----TAATATTTACA-A-A-TCAGTCAA
gi|10                         :      aTTTTTTAT---------A-A-T-----TCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AA-ACAT-A-A-AGA--CA---C-T-CAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACTTGCTAC------T------TGCTG----T-------GCAGCA-ATT-----T--ATAATTC--AACAGAAAAA-G-AAA---ATGATAAACAGT-AT--T---C---TA-TTT-AG-T----TAATA--TAC--A-A-
gi|12                         :                           AT-----TAATTTTAT-TT-TTG-----------CA--------CATAGAGCC-A-C--TTCA---CAAT-CA-A---C-T--C-AA-ACAT-T----GG--CA---C-T-CAAA-C--AT-C-A--T-TC----TT--------CTGC-AA---CA------GT--GGTT-CT------------TA-----TGCTG---T--------GCAGCA-A-T-----TT-ATAATTTAA--CAGCAAAA-G-AAA---ATAATCAACAGT-AT--T---C---TATTTT-AG-T----TGATA--TATCAA-A-TCAGTCat
gi|3                          :                                                  atA-A------CA--------T--AGAGAC---C--T-CA-AAC-ATACA-ATCAA-TTACCAA-ACAT-A-G-AGA--CA---C-T-CAAA-T--ATAC-AATT-CC----TTTCTCC---CC-C-G----CA------GT--GGTTACT------------TGCTACTTGCTG---T--------ACAGCA-A-T-----TT-ATAATC--AAACAG-AAAAAG-AAA---ATGATAAACAG--AC--T-TC----TA-TTT-AGTT----G-ATA--TAC--ATA-TCAGTCAAAAATATTTTT---CAATCTCATCCA-A--GCT-TTATC-AAAACTG-TGC-----ATTTTAA-GTTTTTGAATTGC-AGCA--TATTT-CTCCACAGACTATTTT-AACTTCAAATG-ACATAGTAA-T--CCTGTAAGG-TTAGGTTC-TTTA-CTCTGCAC--CAAACA-----------------TTCAAATTATAA-AGTTTAT----------AGCTTTGTT-ATTAATAGACAGTGGAAATT-C-------ACCTAATATGAT-A---ATATTTGACACATT-AAAACCAAC--TCTCTGA-A-TTTTTC-TGTATATAT----GAAGAAT-CA-AATCA-TTCCACAATGTTTGGGTTTTT-----CACATG-AAATGAAGACATGTATC-ATT-GT-CTCAACATTA-TTTGTACAAAATCTA--CAACCA-TCATTA-GTTTTAA-CATT-AATTTTTT-t
gi|6                          :                                             taatacaA-A------CA--------T-AGGAGAC-A-C--T-AA-TAC-ATGCA-A-----T-AC-AG-ACATTA-A-AGA--CA---C-T-CAAA-C--ATACAAATT-CCCAATTC--------CC-C-ACCGCCA------GT--GGTTAC-------------T------TGCTG----T-------ACAGCACA-CTTTTGT--ATAAATT--AACAG-AAAA-G-GAAAACATGATAAA-AGC-ATAAT-TCG---TA-TTT-TATT----CAGTA--TAC--A-a
gi|2                          :                       tttttttttttttattcttgtatgataattattttttttttgcaagcatatcaaatactatcaaagagacacatcataaacatacaaataa-ACAC-A-G-AGA--CA---ACT-CAAA-C--ATACGAACTACC----TT--------CT-C------CA------GT--GGTTACT------------TGCTACTTGCTG---CT-------GCGCAA-T-T-----T--ATAATT--AAACAG-AAAAAG-AAA---ATAATAAACAGTTAT--T---C---TA-TTTTAGTT-----AATA--TAC--A-AATTAGTCAAAA-TATTTT----CAACCTCATCCCAG--GCT-TTATCAAAA-CTGGTAT-----ATTTT-AAGTTTTTGAATTGCCAGCA--TATTTTCTCCACAAGAAATTT--AACTTCAAATGA-CATAGT-AAT--CCTATAAGGTT-AGGTTCTT--AC-TCTGCATTTCAAAACAATAAAGACTGTATTGTTT-AACATATAA-AAGTA-TAGAATGTATA-GCTTTACT-ATTAATATACAATGGAATTT-CCACCTTAAT--------ATTA---ATATTTGACACAT---AAACCAACT-CTTCTGACGTTTT--C-TGT---TATA-TGGA-GACTTCAGAATCAATTCCACAATGTTTGGG-TTTT---AACACATG-AAGTAAAGACATGGATCCATTTGTC-TCAACATTATCTGTTACAAAATCTA--CAACAGGTCATTAGTTTTTAAACATTA--TTTTTTGTCAA---GTA-TATCC--ACAGGAATTGATTC-GT-ATAAAATTCTAA-CTGTAACCATTGA-CAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATACT---TGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTCGTAT--TCCACTTTTTTTTTTGCCCA-TGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTC-AAAAATACAGGCATACATGGAATTAATATTTGTTTTAATTTGAA--TTCTATC-AATAGTTTATTACTTCTTAAATATGTTGACAATTGCAG-AATAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAAta
gi|17                         :                                                                                                                                                                                                                                                                   tttttttataaattcatttatttgttgccaAACAGT-AT--T---C---TA-TTT-AGTTAATATAATA--TAC--A-AATCAGTCAAAAATATTTTT---CAACCTCATCCA-G--GC----ATCAAAA
gi|4                          :                                                                                                                                                                                                                                                                                                                                                              TATTTCT---CAATCTCATCC--AAAGCTGTTATCATAA-CTG-TGC-----ATTTT-ACGTTTTTGAATTGC--GCA--TATTT-CTCCACCA-ATATCTTAA-CTTCAAATGA-CATAGT-A-AGACCTATAAGGTT-AGGTTCTTTCACTTCTGTAT--CAAACAGATAAAAAATGTATTGTT--AACATATAACAATTA-TAAAGTTAA---GCTTTG-TTATTAATAGACAGTG-AATTGAC-------AA--------AT-ATAAATATTCGACACATTTACA-CCAACTCTTTCTGA-AGTTTTTCGTGTATATAT----GAAGA-T-CA-AATCA-TTCCA-AATGTTTGAGTTCTTTTCAATATTTTGAAATAAA-ACATGTATC-ATT-GTC-TCAACATTATTT-GTACAACATCTA-CGAACAG-TCATTAGTCTTTAA-CATT--TTTTTTT-TCAAAc
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ---AACATTTT-AAAAAAAGATGTG--TC-ATT-GTC-TCGACATTATT--------AATTTA--CAACAG-TCATT-TGTTTTAT-C--TA---TTTTT-TCAAAta

lowQualScore                  :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
lowQualScore                  :                                                                                                         1111111                                                                                          11111                   22222222      1111  111111         666666666666666                    2222222222              1                             111111111            111111111         11   1                 1111                               1111                                                                  22                   1          11           111     2222     1       11           1    11  666666666       1                     1 7777777777777777777777              111        11       22      1         2222    2222   1     1                111                                                                  11               1           1111        111    2      22              333      11   2              2                       22        22         333          22222         2           222      22         33333333      2               222           222222222222222      1     1                    1     2                                1     1     22       2     1   1                            2                                                    1                                    1   333                   2              22        1            2                1     22            1          2            22                       2                                          11                        1     1     44444      22               2                                        
lowQualScore                  :                                                                                                       3 2222222      3 3 3  3    2 2   2 33  2     5 33 5  2   2  33   2 77777  2  2   5   2   66        22222     8    5  7777  00000000  3 3 0000  222222  44     666666666666666  3    3 3 3      3 5555555555      555     3    6 3   555 99  3     0  1 555555555  6  3   3  555555555    55   55 3 2      0   3      0000           6666  55     7   7  4444 6                       6    99     6        3 1    88           11      0  8         0          66 99        777     3333   0 0 0     33           0    33  222222222       0              2      0 0000000000000000000000      2       666        33       00      0   3 3   1111    4444   0     0     2          777    77   8 1 1          2  11  8   8  8          8  0  8          11 8     8       6      8 0  3333     8  777    0      77       4      000      88   0              0                       77        77         555          77777         0           111      77  3      66666666      0               111           555555555555555      5     5                    5   3 0                     4 4        5     5     77       0     5   5                     4      0            88                               4      5     4                              5   555                   0              77        5            0                5     77            5          0            77                       0                                          77                        5     5     66666      77               0                          4             
lowQualScore                  :                                                                                                       . .......      . . .  .    . .   . ..  .     . .. .  .   .  ..   . .....  .  .   .   .   ..        .....     .    .  ....  ........  . . ....  ......  ..     ...............  .    . . .      . ..........      ...     .    . .   ... ..  .     .  . .........  .  .   .  .........    ..   .. . .      .   .      ....           ....  ..     .   .  .... .                       .    ..     .        . .    ..           ..      .  .         .          .. ..        ...     ....   . . .     ..           .    ..  .........       .              .      . ......................      .       ...        ..       ..      .   . .   ....    ....   .     .     .          ...    ..   . . .          .  ..  .   .  .          .  .  .          .. .     .       .      . .  ....     .  ...    .      ..       .      ...      ..   .              .                       ..        ..         ...          .....         .           ...      ..  .      ........      .               ...           ...............      .     .                    .   . .                     . .        .     .     ..       .     .   .                     .      .            ..                               .      .     .                              .   ...                   .              ..        .            .                .     ..            .          .            ..                       .                                          ..                        .     .     .....      ..               .                          .             
lowQualScore                  :                                                                                                       3 8888888      3 3 3  3    9 9   9 99  9     7 99 7  9   9  66   9 11111  9  9   7   9   88        99999     6    7  1111  44444444  3 3 4444  999999  66     222222222222222  3    3 3 3      3 6666666666      222     3    7 3   888 22  3     8  5 333333333  7  3   6  222222222    00   99 6 0      1   5      1111           3333  99     1   3  2222 7                       7    22     7        2 4    88           22      8  0         0          00 00        555     0000   2 0 2     22           0    22  888888888       5              5      0 2222222222222222222222      0       888        22       88      0   2 2   2222    8888   0     0     5          555    88   0 0 0          8  44  0   0  0          0  8  0          00 0     0       6      0 8  2222     0  000    0      55       0      000      55   0              0                       55        55         000          55555         0           555      55  0      55555555      0               000           000000000000000      0     0                    0   0 0                     0 0        5     5     55       0     5   5                     0      0            00                               0      5     0                              0   000                   0              55        5            0                5     55            0          0            55                       0                                          55                        5     5     00000      55               0                          0             
consensus                     :                                                                                            TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTAC-TT-GCTA------CT-TGCT-G-T-GCAGCA-A-T-----T--ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTT-AACTTCAAATGAACATAGTAAT-CCTATAAGG-TTAGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTG-TTTAACATATAA-AATT-ATAAAATTAAT-AGCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATT-AAAACCAACT-TTTCTGAA-TTTTTC-TGTATATAT----GAAG-AC-TCA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GT-CTCAACATTA-TTTGT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CATT--ATTTTTT-TC--AAAGTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
Reference ( family-1558 )     :                                                                                            TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTAC-T--GC--------CT-TGCT-G-T-GCAGCA-A-T-----T--ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTT-AACTTCAAATGAACATAGTAAT-CCTATAAGG-TTAGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTG-TTTAACATATAA-AATT-ATAGAGT-----AGCTTTGCTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTCGACACATT-AAAACCAACT-TTTCTGAA-TTTTTC-TGTATATAT----GAAG-A--TCA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CNTNAAATAAAGACGTGTATC-ATT-GT-CTCAACATTA-TTTGT-ACAAAATCTA--C-AACAG-TCATTAGNTTTTAA-CATT--ATTTTTT-TC--AAAGT-ATATCC--ACAGGAATTGATTC-G-TATAAAATTCT-AACTGTAACCATTG-ACAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATA---CTTGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTC--GTATTCCACTTTTTTTTTTGCCC-ATGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTC-AAAAATACAGGCATACATGGAATTAATATTTGTTTTAATTTGAA--TTCTATC-AATAGTTTATTACTTCTTAAATATGTTGACAATTGCAG-AATAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAA
gi|1                          :                                                                                            TTTTTTTTATA-AAT-----TCATTTTA-T-TT-TTGT-A-ACA-CCAAG-AGACA-C--T-CA-AACCAT-ACAAAT-----AC-AG-ACA-TAA-AGA--CAATAAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTAC-T-------------T-TGCT-G-TTGCAGGA-A-T-----T--ATAATTTAAAACAG-AAAA-G-AAA---A--TA-ATAAACAGTAT--T-----TCCTA-TTT-AGTT----T--CATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC--G-GCC-TTATCAAAAACT----G-TATATTTT-AGTTTTTGAATTGC-AGCA--TATTT-ATCCACAAGAAATTTTAAACTTCAAATGAACATAGT-AT-CCTATAAGGTTTAGGTTCTTTTACCTCTGCATC---AAAAAAAT-AAAGA-TATATTGTTTTAACATATAA-AATTAATAAAATTAATAAGCTTTA-TATTAATAGACAATGGAATTT-C-------A--------CAT---AATATTTGACACATTAAAAACCAACT-TTTCTGAGTTTTTTC-TGTAT-TATAATGGAAG-AC-TCA-AATCA-TTCCACAATGTTTGGG---GTTTTAACA-CATTAAGTAAAGACATGGATC-ATT-GTCCTCAACATTATTTTGT-ACAAAATCTAACC-AACAG-TCATTATTTTTTAA-CATTAAATTTTTT-TCAAAAAGTAATATCCCAACAAGGAATGATTCTGTTATAAA--TCTAAACTGTAACCATTGAACAGAAGAATCAGTAGTTGTTTTTGAAAACAAAATTTTAAAATACTCCTTGTACTGA---T-ATCACCCACATCCATATGGAG---ATATTCAGATCTTCCAC--------TTGCCCAATGGAAGTTGGGATA---TCTTTTTCATTCAAAAATTGTAAAAATAATTT-TAGAA-ATTTTTCATGCAACAAAATA-GGTGCAAAAAATACAGGCATACATGGATTAAATATTTG-TTTAA-TTGAATGTCCTATCAAATAG-TTA-TACTTCTTAAATATGTTGACATTCGCAGAAATAATGCCATTTAATTTCATTACACATACACCTTGGAGATTGTAATAAGCG-TTGAAACTTTTCTAAGGTTAAGACGTTACAATCAGA-GTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTT-AATAAAGACTGGTTTTTCCAGCTATTTTA-ATATTAAAGAATTATACCA-CACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCTTT--CAAAATGCATTTTTTTTCCTTAAG-AAACA-TCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCATACACAGCAAAAAA
gi|10                         :                                                                                              TTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACTT--GCTA------CT-TGCT-G-T-GCAGCA-ATT-----T--ATAATT--CAACAGAAAAA-G-AAA---A--TG-ATAAACAGTA---T-----TC-TA-TTT-AG-T----T--AATA--TAC--A-A-
gi|11                         :                                                                                            TTTTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTAAAAA----CATAC-AATT-CA----TT--------CT-C-A----CA------GT--GGTTAC-TT-GCTA------CT-TGCT-G-T-GCAGCA-A-T-----T--G------------A-AAAA-G-AAA---ACTTG-TTAAA---------------------TT-AATT----TTAAAAA--TGC--A-ATTCAGTCCAAat
gi|12                         :                                                                                                tttTATT-AAT-----T---TT-A-T-TT-TTGC-A--CA-T--AG-AGCCA-C--TTCA-CA--AT--CAA-C-----TC-AA-ACA-TT---GG--CACTCAAA-----CAT-C-A--T-TC----TT--------CTGC-AA---CA------GT--GGTT-------C--------TTATGCT-G-T-GCAGCA-A-T-----TT-ATAATT--TAACAGCAAAA-G-AAA---A--TA-ATCAACAGTA---T-----TC-TATTTT-AG-T----T--GATA--TATCAA-A-TCAGTC
gi|13                         :                                                                                           aTTTTTTTTA----AT-----CCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACTT--GCTA------CT-TGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---A--TG---CAACGGTAT--t
gi|14                         :                                                                                          atTTTTTTTCATA-AAT-----TCAAAT-AAT-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACATTAA-AGAGGCACTCAAA-----CATAC-AATT-Ccgtcatatgtttt
gi|15                         :                                                                                          ttTTTTTTTCATA-A-T-----TCAATT-A-T-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-C
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             aattAACA-TTTTAAAAAAAGATGTGT--C-ATT-GT-CTCGACATTA-TT--------AATTTA--C-AACAG-TCATTTG-TTTTAT-C--T--A-TTTTT-TC--AAAa
gi|17                         :                                                                                                                                                                                                                                                                                                                                                     tgAACAGTAT--T------C-TA-TTT-AGTTAATAT--AATA--TAC--A-AATCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GC----ATCAAAAtga
gi|2                          :                                                                                             TTTTTTTATA-AAT-----TCATTT-A-T-TTGTTGCCA-ACA-C--AG-A-----------------------------------G-ACA-----------ACTCAAA-----CATACGAACTACC----TT--------CT-C------CA------GT--GGTTAC-TT-GCTA------CT-TGCT-GCT-GC-GCA-A-T-----TT-ATAATT--AAACAG-AAAAAG-AAA---A--TA-ATAAACAGTTA--T-----TC-TA-TTTTAGTT-------AATA--TAC--A-AATTAGTCAAAA-TATTTT----CAACCTCATCCCAG-GCT-TTATCAAAA-CT----GGTATATTTTAAGTTTTTGAATTGCCAGCA--TATTTTCTCCACAAGAAATTT--AACTTCAAATGA-CATAGTAAT-CCTATAAGG-TTAGGTTCTT--AC-TCTGCATTTCAAAACA-AT-AAAGACTGTATTG-TTTAACATATAA-AAGT-ATAGAATGTAT-AGCTTTACTATTAATATACAATGGAATTT-CCACCTTAA--------TATT--AATATTTGACACAT---AAACCAACT-CTTCTGAC-GTTTTC-TGT-TATAT----GGAG-ACTTCAGAATCAATTCCACAATGTTTGGG---TTTT-AACA-CATGAAGTAAAGACATGGATCCATTTGT-CTCAACATTA-TCTGTTACAAAATCTA--C-AACAGGTCATTAGTTTTTAAACATT--ATTTTTTGTC---AAGT-ATATCC--ACAGGAATTGATTC-G-TATAAAATTCT-AACTGTAACCATTG-ACAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATA---CTTGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTC--GTATTCCACTTTTTTTTTTGCCC-ATGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTC-AAAAATACAGGCATACATGGAATTAATATTTGTTTTAATTTGAA--TTCTATC-AATAGTTTATTACTTCTTAAATATGTTGACAATTGCAG-AATAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAAc
gi|3                          :                                                                                                                                  -A-ACA-T--AG-AGAC--C--T-CA-AAC-AT-ACAA-TCAATTACCAA-ACA-TAG-AGA--CACTCAAA-----TATAC-AATT-CC----TTTCTCC---CC-C-G----CA------GT--GGTTAC-TT-GCTA------CT-TGCT-G-T-ACAGCA-A-T-----TT-ATAATC--AAACAG-AAAAAG-AAA---A--TG-ATAAACAG-AC--T-----TC-TA-TTT-AGTT-------GATA--TAC--ATA-TCAGTCAAAAATATTTTT---CAATCTCATCC-AA-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAGACTATTTT-AACTTCAAATG-ACATAGTAAT-CCTGTAAGG-TTAGGTTCTTT-A-CTCTGCACC---AAACA------------------TTCAAATTATAA-AGTT--TA---T-----AGCTTTGTTATTAATAGACAGTGGAAATT-C-------ACCTAATATGAT---AATATTTGACACATT-AAAACCAAC--TCTCTGAA-TTTTTC-TGTATATAT----GAAGAA--TCA-AATCA-TTCCACAATGTTTGGG---TTTTT--CA-CATGAAATGAAGACATGTATC-ATT-GT-CTCAACATTA-TTTGT-ACAAAATCTA--C-AACCA-TCATTAG-TTTTAA-CATT--AATTTTT-T
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                               taatacaTATTTCT---CAATCTCATCC-AAAGCTGTTATCATAA-CT----G-TGCATTTTACGTTTTTGAATTGC--GCA--TATTT-CTCCACCA-ATATCTT-AACTTCAAATG-ACATAGTAAGACCTATAAGG-TTAGGTTCTTTCACTTCTGTATC---AAACAGATAAAAAA-TGTATTG--TTAACATATAACAATT-ATAAAGTTA---AGCTTTGTTATTAATAGACAGT-GAATTGAC-------A--------AATATAAATATTCGACACATT-TACACCAACTCTTTCTGAAGTTTTTCGTGTATATAT----GAAG-A--TCA-AATCA-TTCCA-AATGTTTGAGTTCTTTTCAATATTTTGAAATAAA-ACATGTATC-ATT-GT-CTCAACATTA-TTTGT-ACAACATCTA--CGAACAG-TCATTAGTCTTTAA-CATT--TTTTTTT-TC--AAAa
gi|5                          :                                                                                             TTATTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CATTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CAGTCACCGT--GGTTACTT--GCTACTTGTACT-TGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---A--TA-ATAAACAGTAT--TCTACATG-TA-TTT-AG-T----T--AATA--TACA-A-A-TCAGTC-AAAATATTTTC---CAACCTCATCC-AG-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACATGATATTTT-AACTTCAAATG-ACATAGTAAT-CCTATAAGta
gi|6                          :                                                                                                                               tta-A-ACA-T--AGGAGACA-C--T-AA-TAC-AT-GCAA-T-----AC-AG-ACATTAA-AGA--CACTCAAA-----CATACAAATT-CCCAATTC--------CC-C-ACCGCCA------GT--GGTTA---------------CT-TGCT-G-T-ACAGCACA-CTTTTGT--ATAAAT--TAACAG-AAAA-G-GAAAACA--TG-ATAAA-AGCATAAT-----TCGTA-TTT-TATT----C--AGTA--TAC--A-
gi|7                          : tttttttttttttattcttgtatgataattattttttttttgcaagcatatcaaatactatcaaagagacacatcataaacatacaaataaTTTTTTTTGGATAAT-----TTATTT-A-T-TT-TTG--------------------------A-AAC-AT-ACAA-T-----AC-AA-TTA-TAG-AGA--CACTCAAA-----CATAC-AATT-CC----TTCGCCCGGCCT-C-A----CA------GT--GGTTA---------------CT-TGCT-G-T-GCAACA-ATT-----T--ATCATT--AAACAG-AAAA-ATAAA---A--AA-AAAAAGAG-AA--T-----TC-CA-TTT-AG-T----T--GATA--TACA-A-A-TCTGTCAAAATTGTTTTTTTACAACGTCATCC-AA-ACT-TTAT-GAGAACTGTACG-TGCAATTCAAGTTTTTGAATTGC-AGCATGTATTT-ta
gi|8                          :                                                                                             TTTTTCT-TA-A-------TCATTT-A-TATT-TTGC-A-A-A-C--AG-AGA-A-C--TTCA-AAC-ATCACAA-T-----AC-AG-ACA-TAAGAGA--CACAAAAAAAATTTATACCAATTTCC----TT--------CT-C-A----CAC-----GTTGAGTTAC-TT-GCTA------CT-TGCTTG-A-GCAGCA-A-T-----TTTATAATG--AAACAG-AAAA-A-GAA---A--TC-ATAAACAGTATAAT-----TC-TA-TTT-AGCT----T--AATATTTACA-A-A-TCAGTCAA
gi|9                          :                                                                                           aTTTTTTTTATA-AATACTGTTCATTT-A-T-TT-T-GC-ATACAAC--AG-AGACA-TCTT-CAGAAC-AT--CAA-T-----AC-AGGACA-TAA-AGAG-CACTAAAAA----CATAC-AATT-CA----TT--------CT-CCA----CA------GT--GGTTAC-TTTGCTA------CT-T-TT-G-T-GTGTCA-G----------AT--TT--GAA----AAAA-G-AAA---ACTTGTTTAAATTATAT--T-----TT-TA-T

lowQualScore                  :                                                                                                         1111111                                                                                          11111                   22222222     1111  111111              1111111                     2222222222              1                             111111111            111111111         11   1                 1111                               1111                                                                  22                     1        11           111     2222     1          11        1     1           1                            1 7777777777777777777777                   1     11       11     1 1         2222       1  1     1                111                                                                  11                             111          111   1     11              1  1     11     1             1                      11        11           222        222  1        1              222   11           33333333     1               222          555555555555555      1     1                      1        1                              1    1    11        1     1  1                             1                                                    1                                   1  222                   1              11          1          1                1     11             1         1            11                       1                                          11                        1     1     22222      11               1                                        
lowQualScore                  :                                                                                                       3 2222222      3 3 3  3    2 2   2 33  2     5 33 5  2   2  33   2 77777  2  2   5   2   66        22222     8    5  7777  00000000  6  0000  222222  44      3   0000000        3 3 3      3 5555555555      555     6    3 3   555 99  3     0  1 555555555  6  3   3  555555555    55   55 3 2      0   3      0000           6666  55     7   7  4444 6         3             6    99     6        3 1    0  8         11       0 8           0        66 99        777     3333   0 0 0     3  33        0     0       77  0       3             2      0 0000000000000000000000              66   0     33       00     0 0   3 3   1111     8 0  0     0     2          777    77   8 1               0   8   8   8           88  8          11 8     8       0   0  8   8  777     8    777   5     88       1      5  5     88     5             5                      88        88           000        111  5        5              111   88  1        66666666     5               111          666666666666666      5     5                      5 1      5                1 1           5    5    88        5     5  5                    1        5          22                               1        5   1                               5  111                   5              77          5          5                5     88             5         5            88                       5                                          77                        5     5     77777      88               5                          1             
lowQualScore                  :                                                                                                       . .......      . . .  .    . .   . ..  .     . .. .  .   .  ..   . .....  .  .   .   .   ..        .....     .    .  ....  ........  .  ....  ......  ..      .   .......        . . .      . ..........      ...     .    . .   ... ..  .     .  . .........  .  .   .  .........    ..   .. . .      .   .      ....           ....  ..     .   .  .... .         .             .    ..     .        . .    .  .         ..       . .           .        .. ..        ...     ....   . . .     .  ..        .     .       ..  .       .             .      . ......................              ..   .     ..       ..     . .   . .   ....     . .  .     .     .          ...    ..   . .               .   .   .   .           ..  .          .. .     .       .   .  .   .  ...     .    ...   .     ..       .      .  .     ..     .             .                      ..        ..           ...        ...  .        .              ...   ..  .        ........     .               ...          ...............      .     .                      . .      .                . .           .    .    ..        .     .  .                    .        .          ..                               .        .   .                               .  ...                   .              ..          .          .                .     ..             .         .            ..                       .                                          ..                        .     .     .....      ..               .                          .             
lowQualScore                  :                                                                                                       3 8888888      3 3 3  3    9 9   9 99  9     7 99 7  9   9  66   9 11111  9  9   7   9   88        99999     6    7  1111  44444444  7  4444  999999  66      3   0000000        3 3 3      3 6666666666      222     7    3 3   888 22  3     8  5 333333333  7  3   6  222222222    00   99 6 0      1   5      1111           3333  99     1   3  2222 7         2             7    22     7        2 4    8  0         22       8 0           0        00 00        555     0000   2 0 2     2  22        0     0       22  0       2             5      0 2222222222222222222222              88   0     22       88     0 0   2 2   2222     8 0  0     0     5          555    88   0 4               6   0   0   0           88  0          00 0     0       8   8  0   0  000     0    000   5     00       0      5  5     55     5             5                      00        55           555        000  5        5              555   00  0        55555555     5               000          555555555555555      0     0                      0 0      5                0 0           5    5    00        5     5  5                    0        5          00                               0        5   0                               0  555                   5              55          5          5                5     55             0         5            00                       5                                          55                        5     5     00000      00               5                          0             
consensus                     :                                                                                            TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGAACATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
Reference ( family-1558 )     :                                                                                            TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-A-T-----T--ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGAACATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAATTAATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
gi|1                          :                                                                                            TTTTTTTTATA-AAT-----TCATTTTA-T-TT-TTGT-A-ACA-CCAAG-AGACA-C--T-CA-AACCAT-ACAAAT-----AC-AG-ACA-TAA-AGA--CAATAAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TT------------TGCT-G-TTGCAGGA-A-T-----T--ATAATTTAAAACAG-AAAA-G-AAA---A--TA-ATAAACAGTAT--T-----TCCTA-TTT-AGTT----T--CATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC--G-GCC-TTATCAAAAACT----G-TATATTTTA-GTTTTTGAATTGC-AGCA--TATTT-ATCCACAAGAAATTTTAAACTTCAAATGAACATAGTA-T-CCTATAAGGTTTAGGTTCTTTTACCTCTGCATC---AAAAAAAT-AAAGA-TATATTGTTTTAACATATAA-AATTAATAAAATTAATAAGCTTTAT-ATTAATAGACAATGGAATTT-C-------A--------CAT---AATATTTGACACATTAAAAACCAACT-TTTCTGAG-TTTTTTC-TGTAT-TATAATGGAAGACT-CA-AATCA-TTCCACAATGTTTGGG---GTTTTAACA-CATTAAGTAAAGACATGGATC-ATT-GTCCTCAACATTATTTTGT-ACAAAATCTAACC-AACAG-TCATTATTTTTTAA-CAT-TAAATTTTTT-TCAAAAAGTAATATCCCAACAAGGAATGATTCTGTTATAAA--TCTAAACTGTAACCATTGAACAGAAGAATCAGTAGTTGTTTTTGAAAACAAAATTTTAAAATACTCCTTGTACTGA---TA-TCACCCACATCCATATGGAGATA---TTCAGATCTTCCACTT--------GCCCAATGGAAGTTGGGATAT---CTTTTTCATTCAAAAATTGTAAAAATAATTT-TAGAA-ATTTTTCATGCAACAAAATAGG-TGCAAAAAATACAGGCATACATGGATTAAATATTTGTTT-AATT-GAATGTCCTATCAAATAGTT-AT-ACTTCTTAAATATGTTGACATTCGCAGAAATAATGCCATTTAATTTCATTACACATACACCTTGGAGATTGTAATAAGCGTT-GAAACTTTTCTAAGGTTAAGACGTTACAATCAGAG-TCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAA-TAAAGACTGGTTTTTCCAGCTATTTTA-ATATTAAAGAATTATACCAC-ACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCTTT--CAAAATGCATTTTTTTTCCTTAAG-AAACA-TCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCATACACAGCAAAAAA
gi|10                         :                                                                                              TTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT-----T--ATAATT--CAACAGAAAAA-G-AAA---A--TG-ATAAACAGTA---T-----TC-TA-TTT-AG-T----T--AATA--TAC--A-A-
gi|11                         :                                                                                            TTTTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTAAAAA----CATAC-AATT-CA----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-A-T-----T--G------------A-AAAA-G-AAA---ACTTG-TTAAA---------------------TT-AATT----TTAAAAA--TGC--A-ATTCAGTCCAAat
gi|12                         :                                                                                                tttTATT-AAT-----T---TT-A-T-TT-TTGC-A--CA-T--AG-AGCCA-C--TTCA-CA--AT--CAA-C-----TC-AA-ACA-TT---GG--CACTCAAA-----CAT-C-A--T-TC----TT--------CTGCAA---CA------GT--GGTT-C-TTA-----------TGCT-G-T-GCAGCA-A-T-----TT-ATAATT--TAACAGCAAAA-G-AAA---A--TA-ATCAACAGTA---T-----TC-TATTTT-AG-T----T--GATA--TATCAA-A-TCAGTC
gi|13                         :                                                                                           aTTTTTTTTA----AT-----CCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---A--TG---CAACGGTAT--t
gi|14                         :                                                                                          atTTTTTTTCATA-AAT-----TCAAAT-AAT-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACATTAA-AGAGGCACTCAAA-----CATAC-AATT-Ccgtcatatgtttt
gi|15                         :                                                                                          ttTTTTTTTCATA-A-T-----TCAATT-A-T-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-C
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          aattAACA-TTTTAAAAAAAGA--TGTGTC-ATT-GTC-TCGACATTATT---------AATTTA--C-AACAG-TCATTTGTTTT-----ATCTA---TTTTT-TCAAA--a
gi|17                         :                                                                                                                                                                                                                                                                                                                                                  tgAACAGTAT--T------C-TA-TTT-AGTTAATAT--AATA--TAC--A-AATCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GC----ATCAAAAtga
gi|2                          :                                                                                             TTTTTTTATA-AAT-----TCATTT-A-T-TTGTTGCCA-ACA-C--AG-A-----------------------------------G-ACA-----------ACTCAAA-----CATACGAACTACC----TT--------CT-C-----CA------GT--GGTTAC-TTGC------TACTTGCT-GCT-GC-GCA-A-T-----TT-ATAATT--AAACAG-AAAAAG-AAA---A--TA-ATAAACAGTTA--T-----TC-TA-TTTTAGTT-------AATA--TAC--A-AATTAGTCAAAA-TATTTT----CAACCTCATCCCAG-GCT-TTATCAAAA-CT----GGTATATTTTAAGTTTTTGAATTGCCAGCA--TATTTTCTCCACAAGAAATTT-AA-CTTCAAATGA-CATAGTAAT-CCTATAAGGTT-AGGTTCTT--AC-TCTGCATTTCAAAACA-AT-AAAGACTGTATTGTTT-AACATATAA-AAGTA-TAGAATGTATA-GCTTTACTATTAATATACAATGGAATTT-CCACCTTAA--------TATT--AATATTTGACACAT--AAA-CCAACT-CTTCTGAC-GTTTT-C-TGT-TATAT----GGAGACTTCAGAATCAATTCCACAATGTTTGGG---TTTT-AACA-CATGAAGTAAAGACATGGATCCATTTGTC-TCAACATTATCT-GTTACAAAATCTA--C-AACAGGTCATTAGTTTTTAAACAT-TA--TTTTTTGTCAA---GTA-TATCC--ACAGGAATTGATTC-GT-ATAAAATTCTAA-CTGTAACCATTGA-CAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATACT---TGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTC--GTATTCCACTTTTTTTTTTGCCCA-TGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTCAAAAA-TACAGGCATACATGGAATTAATATTTGTTTTAATTTGAAT--TCTATCAA-TAGTTTATTACTTCTTAAATATGTTGACAATTGCAGAA-TAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAAc
gi|3                          :                                                                                                                                  -A-ACA-T--AG-AGAC--C--T-CA-AAC-AT-ACAA-TCAATTACCAA-ACA-TAG-AGA--CACTCAAA-----TATAC-AATT-CC----TTTCTCC---CC-CG----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-ACAGCA-ATT-----T--ATAATC--AAACAGAAAAA-G-AAA---A--TG-ATAAACAG-AC--T-----TC-TA-TTT-AG-T----T--GATA--TAC--ATA-TCAGTCAAAAATATTTTT---CAATCTCATCC-AA-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAGACTATTTTAA-CTTCAAATG-ACATAGTAAT-CCTGTAAGGTT-AGGTTCTTT-A-CTCTGCACC---AAACA-----------------TTC---------A-AATTA-TAAAGTTTATA-GCTTTGTTATTAATAGACAGTGGAAATT-C-------ACCTAATATGAT---AATATTTGACACATTAAAA-CCAAC--TCTCTGAA-TTTTT-C-TGTATATAT----GAAGAAT-CA-AATCA-TTCCACAATGTTTGGG---TTTTT--CA-CATGAAATGAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACCA-TCATTAG-TTTTAA-CAT-TA--ATTTTT-T
gi|4                          :                                                                                                                                                                                                                                                                                                                                                                                                            taatacaTATTTCT---CAATCTCATCC-AAAGCTGTTATCATAA-CT----G-TGCATTTTACGTTTTTGAATTGC--GCA--TATTT-CTCCACCA-ATATCTTAA-CTTCAAATG-ACATAGTAAGACCTATAAGGTT-AGGTTCTTTCACTTCTGTATC---AAACAGATAAAAAA-TGTATTG-TT-AACATATAACAATTA-TAAAGTTA--A-GCTTTGTTATTAATAGACAGT-GAATTGAC-------A--------AATATAAATATTCGACACATTTACA-CCAACTCTTTCTGAAGTTTTT-CGTGTATATAT----GAAGA-T-CA-AATCA-TTCCA-AATGTTTGAGTTCTTTTCAATATTTTGAAATAAA-ACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAACATCTA--CGAACAG-TCATTAGTCTTTAA-CAT-TT--TTTTTT-TCAAA--a
gi|5                          :                                                                                             TTATTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CATTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CAGTCACCGT--GGTTAC-TTGCTACTTGTACTTGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---A--TA-ATAAACAGTAT--TCTACATG-TA-TTT-AG-T----T--AATA--TACA-A-A-TCAGTC-AAAATATTTTC---CAACCTCATCC-AG-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACATGATATTTTAA-CTTCAAATG-ACATAGTAAT-CCTATAAGta
gi|6                          :                                                                                                                               tta-A-ACA-T--AGGAGACA-C--T-AA-TAC-AT-GCAA-T-----AC-AG-ACATTAA-AGA--CACTCAAA-----CATACAAATT-CCCAATTC--------CC-CACCGCCA------GT--GGT--------------TACTTGCT-G-T-ACAGCACA-CTTTTGT--ATAAAT--TAACAG-AAAA-G-GAAAACA--TG-ATAAA-AGCATAAT-----TCGTA-TTT-TATT----C--AGTA--TAC--A-
gi|7                          : tttttttttttttattcttgtatgataattattttttttttgcaagcatatcaaatactatcaaagagacacatcataaacatacaaataaTTTTTTTTGGATAAT-----TTATTT-A-T-TT-TTG--------------------------A-AAC-AT-ACAA-T-----AC-AA-TTA-TAG-AGA--CACTCAAA-----CATAC-AATT-CC----TTCGCCCGGCCT-CA----CA------GT--GGT--------------TACTTGCT-G-T-GCAACA-ATT-----T--ATCATT--AAACAG-AAAA-ATAAA---A--AA-AAAAAGAG-AA--T-----TC-CA-TTT-AG-T----T--GATA--TACA-A-A-TCTGTCAAAATTGTTTTTTTACAACGTCATCC-AA-ACT-TTAT-GAGAACTGTACG-TGCAATTCAAGTTTTTGAATTGC-AGCATGTATTT-ta
gi|8                          :                                                                                             TTTTTCT-TA-A-------TCATTT-A-TATT-TTGC-A-A-A-C--AG-AGA-A-C--TTCA-AAC-ATCACAA-T-----AC-AG-ACA-TAAGAGA--CACAAAAAAAATTTATACCAATTTCC----TT--------CT-CA----CAC-----GTTGAGTTAC-TTGC------TACTTGCTTG-A-GCAGCA-A-T-----TTTATAATG--AAACAG-AAAA-A-GAA---A--TC-ATAAACAGTATAAT-----TC-TA-TTT-AGCT----T--AATATTTACA-A-A-TCAGTCAA
gi|9                          :                                                                                           aTTTTTTTTATA-AATACTGTTCATTT-A-T-TT-T-GC-ATACAAC--AG-AGACA-TCTT-CAGAAC-AT--CAA-T-----AC-AGGACA-TAA-AGAG-CACTAAAAA----CATAC-AATT-CA----TT--------CTCCA----CA------GT--GGTTACTTTGC------TACTT-TT-G-T-GTGTCA-G----------AT--TT--GAA----AAAA-G-AAA---ACTTGTTTAAATTATAT--T-----TT-TA-T