lowQualScore : 2222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111
lowQualScore : 2222222222222222222 2 555555555555555555555555 2 33333 22222222 22222222 111111 111111 777777777777777777777777777777777777777777777777777777 33 1 4444444444 22222222 11 1 1111 444444444 1 222222 222 11 22 1111 22 33 333333 2 22222 11 6666666666666666666666 1 7777777777777 3333 99999999999999999999999999 33 22 222 1 6666666666 111 1 1 2 2222 11 1 1 1 33 222 44 1 222 1 444 1 55555555555555 1 77777777777 4 4 11 666 55 777 999999 4 5555555555555555555555555555555555555555555555555555555555555555555555555555 4444444 5555555 222 4 4 55 4 55555 1 4 33 1 4 22 8888888 4 55 4 4 4 55 4 4 55 4 55 4 4 0000000000000 4 22
lowQualScore : 0000000000000000000 5 3 3 000000000000000000000000 2 5 66 5 2 7 2 2 22222 2 2 2 5 444 66 33333333 2 33 8 6 7777 22222222 3 111111 444444 55 555555555555555555555555555555555555555555555555555555 22 4 7 4 777 0 4 4444444444 4 4 99999999 66 99 4 0 6 3333 444444444 9 0 8 333333 333 88 11 33 5555 44 3 11 222222 7 3 7 11111 88 2222222222222222222222 3 9999999999999 2222 1 6 99999999999999999999999999 11 7 00 999 7 3 6666666666 7 999 3 3 6 3 0000 4 33 2 2 5 0 0 00 3 111 88 0 111 0 3 666 0 77777777777777 6 6 7 11111111111 0 0 22 111 55 000 222222 6 0 7777777777777777777777777777777777777777777777777777777777777777777777777777 9999999 6 6666666 555 0 0 55 6 0 33333 7 6 0 44 7 0 33 1111111 0 6 55 0 0 0 55 0 0 55 0 6 55 6 0 0 2222222222222 0 33
lowQualScore : ................... . . . ........................ . . .. . . . . . ..... . . . . ... .. ........ . .. . . .... ........ . ...... ...... .. ...................................................... .. . . . ... . . .......... . . ........ .. .. . . . .... ......... . . . ...... ... .. .. .. .... .. . .. ...... . . . ..... .. ...................... . ............. .... . . .......................... .. . .. ... . . .......... . ... . . . . .... . .. . . . . . .. . ... .. . ... . . ... . .............. . . . ........... . . .. ... .. ... ...... . . ............................................................................ ....... . ....... ... . . .. . . ..... . . . .. . . .. ....... . . .. . . . .. . . .. . . .. . . . ............. . ..
lowQualScore : 9999999999999999999 8 3 3 333333333333333333333333 9 7 88 7 9 5 6 9 11111 9 9 9 7 555 88 44444444 9 99 6 2 7777 33333333 6 888888 111111 00 777777777777777777777777777777777777777777777777777777 55 5 3 0 000 3 0 0000000000 0 0 22222222 11 44 4 0 0 3333 000000000 8 6 0 000000 000 88 00 00 2222 88 2 00 222222 3 7 3 00000 33 7777777777777777777777 3 3333333333333 0000 0 7 33333333333333333333333333 33 3 77 333 3 3 7777777777 3 333 3 3 7 3 8888 0 00 0 5 0 0 0 00 2 000 88 0 555 0 2 555 0 33333333333333 0 0 0 00000000000 0 0 00 000 00 000 000000 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000 0000000 0 0000000 000 0 0 00 0 0 00000 0 0 0 00 0 0 00 0000000 0 0 00 0 0 0 00 0 0 00 0 0 00 0 0 0 0000000000000 0 00
consensus : TTTTTTTTAT---------A-AAT-----TCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AG-ACAT-A-A-AGA--CA---C-T-CAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACT-GC--C------T------TGCTG----T-------GCAGCA-A-T-----T--ATAATT--AAACAG-AAAA-G-AAA---ATGATAAACAGT-AT--T-T-C---TA-TTT-AGTT----TAATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCCA-G--GCT-TTATCAAAAACTG-TGC-----ATTTTAA-GTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTT-AACTTCAAATGAACATAGTAA-T--CCTATAAGGTT-AGGTTCTTTCACCTCTGCAT--CAAACAGATAAAGA-TGTATTGTTT-AACATATAA-AATTA-TAGAGT--A---GCTTTGCT-ATTAATAGACAGTGGAATTT-C-------AN--------AT-A---ATATTCGACACATT-AAAACCAACT-TTTCTGA-A-TTTTTC-TGTATATAT----GAAGA-T-CA-AATCA-TTCCACAATGTTTGGGTTTTT---AACACNTN-AAATAAAGACGTGTATC-ATT-GTC-TCAACATTATTT-GTACAAAATCTA--CAACAG-TCATTAGNTTTTAA-CATTA--TTTTTT-TCAAA--GTA-TATCC--ACAGGAATTGATTC-GT-ATAAAATTCTAA-CTGTAACCATTGA-CAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATACT---TGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTCGTAT--TCCACTTTTTTTTTTGCCCA-TGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTC-AAAAATACAGGCATACATGGAATTAATATTTGTTTTAATTTGAA--TTCTATC-AATAGTTTATTACTTCTTAAATATGTTGACAATTGCAG-AATAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAA
Reference ( gi|1 ) : TTTTTTTTAT---------A-AAT-----TCATTTTAT-TT-TTG-TA-A------CA--------CCAAGAGAC-A-C--T-CA-AACCATACA-A---A-T-AC-AG-ACAT-A-A-AGA--CA---A-T-AAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACT------------T------TGCTG---TT-------GCAGGA-A-T-----T--ATAATTTAAAACAG-AAAA-G-AAA---ATAATAAACAGT-AT--T-TCC---TA-TTT-AGTT----TCATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC--G--GCC-TTATCAAAAACTG-TAT-----ATTTT-A-GTTTTTGAATTGC-AGCA--TATTT-ATCCACAAGAAATTTTAAACTTCAAATGAACATAGT-A-T--CCTATAAGGTTTAGGTTCTTTTACCTCTGCAT--CAAAAAAATAAAGA-TATATTGTTTTAACATATAA-AATTAATAAAATTAATAAGCTTTA-T-ATTAATAGACAATGGAATTT-C-------AC--------AT-A---ATATTTGACACATTAAAAACCAACT-TTTCTGA-GTTTTTTC-TGTAT-TATAATGGAAGACT-CA-AATCA-TTCCACAATGTTTGGGGTTTT---AACACATT-AAGTAAAGACATGGATC-ATT-GTCCTCAACATTATTTTGTACAAAATCTAACCAACAG-TCATTATTTTTTAA-CATTAAATTTTTT-TCAAAAAGTAATATCCCAACAAGGAATGATTCTGTTATAAA--TCTAAACTGTAACCATTGAACAGAAGAATCAGTAGTTGTTTTTGAAAACAAAATTTTAAAATACTCCTTGTACTGA---TA-TCACCCACATCCATATGGAGATA---TTCAGATCTTCCACTT--------GCCCAATGGAAGTTGGGATAT---CTTTTTCATTCAAAAATTGTAAAAATAATTT-TAGAA-ATTTTTCATGCAACAAAATA-GGTGCAAAAAATACAGGCATACATGGATTAAATATTTG-TTTAA-TTGAATGTCCTATCAAATAG-TTA-TACTTCTTAAATATGTTGACATTCGCAGAAATAATGCCATTTAATTTCATTACACATACACCTTGGAGATTGTAATAAGCG-TTGAAACTTTTCTAAGGTTAAGACGTTACAATCAGA-GTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTT-AATAAAGACTGGTTTTTCCAGCTATTTTA-ATATTAAAGAATTATACCA-CACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCTTT--CAAAATGCATTTTTTTTCCTTAAG-AAACA-TCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCATACACAGCAAAAAA
gi|13 : TTTTTTTTA-------------AT-----CCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AA-ACAT-A-A-AGA--CA---C-T-CAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACTTGCTAC------T------TGCTG----T-------GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---ATG--CAACGGT-AT--CGTCA---TA-T----GTT----T
gi|11 : atTTTTTTTTAT---------A-A-T-----TCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AG-ACAT-A-A-AGA--CA---C-TAAAAA-C--ATAC-AATT-CA----TT--------CT-C-A----CA------GT--GGTTACTTGCTAC------T------TGCTG----T-------GCAG---------------CAATTGAAAA-AG-AAAA-t
gi|7 : tttTTTTTTTTGG---------ATAAT-----TTATTT-AT-TT-TTG---------------------------------------A-AAC-ATACA-A-----T-AC-AA-TTAT-A-G-AGA--CA---C-T-CAAA-C--ATAC-AATT-CC----TTCGCCCGGCCT-C-A----CA------GT--GGTTAC-------------T------TGCTG----T-------GCAACA-ATT-----T--ATCATT--AAACAG-AAAA-ATAAA---AAAAAAAAGAGA-AT--T---C---CA-TTT-AG-T----TGATA--TACA-A-A-TCTGTCAAAATTGTTTTTTTACAACGTCATCCA-A--ACT-TTAT-GAGAACTG-TACGTGCAATTCA-A-GTTTTTGAATTGC-AGCATGTATTT-cttgttaaattaattttaaaaatgcaattcagtccaa
gi|9 : TTTTTTTTAT---------A-AATACTGTTCATTT-AT-TT-T-G-CATA------CA--------ACA-GAGAC-A-TCTT-CA-GAACAT-CA-A-----T-AC-AGGACAT-A-A-AGAG-CA---C-T-AAAAAC--ATAC-AATT-CA----TT--------CT-CCA----CA------GT--GGTTACT------------T------TGCTACTTTT-------GTGTG----T-----C--A-GATTTGAA-----AAAA-G-AAA---A
gi|15 : atttTTTTTTTCAT---------A-A-T-----TCAATT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-AAC--T-CA-AAC-ATACA-A-----T-AC-AG-ACAT-A-A-AGA--CA---C-T-CAAA-C--ATAC-AATT-Ccttgtttaaattatatttttataaaagtatgtcaatttctagtctc
gi|14 : aattTTTTTTTCAT---------A-AAT-----TCAAATAAT-TT-TTG-CA-A------CA--------C--AGAGAC-AAC--T-CA-AAC-ATACA-A-----T-AC-AG-ACATTA-A-AGAGGCA---C-T-CAAA-C--ATAC-AATT-Ca
gi|6 : ttTTTTTTTTATTCTTGTATGATAAT-----T-ATTTTTT-TT-TTG-CA-AGCATATCAAATACTATCAAAGAGAC-A-CA-T-CATAAACATACA-A---A-T-A--AA-ACAT-AGG-AGA--CA---C-T-AATA-C--ATGC-AAT
gi|2 : tttttTTTTTTTAT---------A-AAT-----TCA-TTTAT-TTGTTGCCA-A------CA--------C--AGAGACAA-C--T-CA-AA-CATACG-A---ACT-AC-acagacattaaagacactcaaacatacaaattcccaattccccaccgccagtggttacttgctgtacagcacacttttgtataaattaacagaaaaggaaaacatgataaaagcataattcgtattttattcagtatacata
gi|5 : TTATTTTAT---------A-A-T-----TCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AA-ACAT-A-A-AGA--CA---T-T-CAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CAGTCACCGT--GGTTACTTGCTACTTGTACT------TGCTG----T-------GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---ATAATAAACAGT-AT--TCTACATGTA-TTT-AG-T----TAATA--TACA-A-A-TCAGTC-AAAATATTTTC---CAACCTCATCCA-G--GCT-TTATC-AAAACTG-TGC-----ATTTTAA-GTTTTTGAATTGC-AGCA--TATTT-CTCCACATGATATTTT-AACTTCAAATG-ACATAGTAA-T--CCTATAAGcttctccagtggttacttgctacttgctgctgcgcaatttataattaaacagaaaaagaaaataataaacagttattctattttagttaatatacaaattagtcaaaatattttcaacctcatcccaggctttatcaaaactggtatattttaagtttttgaattgccagcatattttctccacaagaaatttaacttcaaatgacatagtaatcctataaggttaggttcttactctgcatttcaaaacaataaagactgtattgtttaacatataaaagtatagaatgtatagctttactattaatatacaatggaatttccaccttaatattaatatttgacacataaaccaactcttctgacgttttctgttatatggagacttcagaatcaattccacaatgtttgggttttaacacatgaagtaaagacatggatccatttgtctcaacattatctgttacaaaatctacaacaggtcattagtttttaaacattattttttgtcaagtatatccacaggaattgattcgtataaaattctaactgtaaccattgacagaagaattggtagttgttttgaaacaaatttaaaatacttgtactgaaactaatcacctactccatatggagataatattcgtattccacttttttttttgcccatggaagttgggatattctctttttcatttaatttgcagaacatttttcatgcaacaaaacagggttcaaaaatacaggcatacatggaattaatatttgttttaatttgaattctatcaatagtttattacttcttaaatatgttgacaattgcagaataatgccattatatttcattacacatacaccttggagattgtattaagcgtttgaattttttctaaggttaagacgttacaatcagaggtcaaaaatcttgaacaattttaattctttttcatacattccttaaataaagactggttttccagctattttatatattagaattataccaccactggaatattttgaaaattgtttttgacatttggaagattctgacttgtcttcaaatacaaaaaccaagcattaaaaacatccttgccaaaatgcatttttttcccttaagaaaacattcttcaataaaatatctccaaaatcatataacttcataagaatatcatttccaagcacagcaaaaaa
gi|8 : ttaTTTTTCT-T---------A-A-------TCATTT-ATATT-TTG-CA-A-------A--------C--AGAGA--A-C--TTCA-AAC-AT-CACA---A-T-AC-AG-ACAT-A-AGAGA--CACAAA-A-AAAA-TTTATACCAATTTCC----TT--------CT-C-A----CAC-----GTTGAGTTACT------------T-------GCTA---CTTGCTTGAGCAGCA-A-T-----TTTATAAT--GAAACAG-AAAA-A-GAA---ATCATAAACAGT-ATAAT-T-C---TA-TTT-AGCT----TAATATTTACA-A-A-TCAGTCAA
gi|10 : aTTTTTTAT---------A-A-T-----TCATTT-AT-TT-TTG-CA-A------CA--------C--AGAGAC-A-C--T-CA-AAC-ATACA-A-----T-AC-AA-ACAT-A-A-AGA--CA---C-T-CAAA-C--ATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACTTGCTAC------T------TGCTG----T-------GCAGCA-ATT-----T--ATAATTC--AACAGAAAAA-G-AAA---ATGATAAACAGT-AT--T---C---TA-TTT-AG-T----TAATA--TAC--A-A-
gi|12 : AT-----TAATTTTAT-TT-TTG-----------CA--------CATAGAGCC-A-C--TTCA---CAAT-CA-A---C-T--C-AA-ACAT-T----GG--CA---C-T-CAAA-C--AT-C-A--T-TC----TT--------CTGC-AA---CA------GT--GGTT-CT------------TA-----TGCTG---T--------GCAGCA-A-T-----TT-ATAATTTAA--CAGCAAAA-G-AAA---ATAATCAACAGT-AT--T---C---TATTTT-AG-T----TGATA--TATCAA-A-TCAGTCat
gi|3 : atA-A------CA--------T--AGAGAC---C--T-CA-AAC-ATACA-ATCAA-TTACCAA-ACAT-A-G-AGA--CA---C-T-CAAA-T--ATAC-AATT-CC----TTTCTCC---CC-C-G----CA------GT--GGTTACT------------TGCTACTTGCTG---T--------ACAGCA-A-T-----TT-ATAATC--AAACAG-AAAAAG-AAA---ATGATAAACAG--AC--T-TC----TA-TTT-AGTT----G-ATA--TAC--ATA-TCAGTCAAAAATATTTTT---CAATCTCATCCA-A--GCT-TTATC-AAAACTG-TGC-----ATTTTAA-GTTTTTGAATTGC-AGCA--TATTT-CTCCACAGACTATTTT-AACTTCAAATG-ACATAGTAA-T--CCTGTAAGG-TTAGGTTC-TTTA-CTCTGCAC--CAAACA-----------------TTCAAATTATAA-AGTTTAT----------AGCTTTGTT-ATTAATAGACAGTGGAAATT-C-------ACCTAATATGAT-A---ATATTTGACACATT-AAAACCAAC--TCTCTGA-A-TTTTTC-TGTATATAT----GAAGAAT-CA-AATCA-TTCCACAATGTTTGGGTTTTT-----CACATG-AAATGAAGACATGTATC-ATT-GT-CTCAACATTA-TTTGTACAAAATCTA--CAACCA-TCATTA-GTTTTAA-CATT-AATTTTTT-t
gi|6 : taatacaA-A------CA--------T-AGGAGAC-A-C--T-AA-TAC-ATGCA-A-----T-AC-AG-ACATTA-A-AGA--CA---C-T-CAAA-C--ATACAAATT-CCCAATTC--------CC-C-ACCGCCA------GT--GGTTAC-------------T------TGCTG----T-------ACAGCACA-CTTTTGT--ATAAATT--AACAG-AAAA-G-GAAAACATGATAAA-AGC-ATAAT-TCG---TA-TTT-TATT----CAGTA--TAC--A-a
gi|2 : tttttttttttttattcttgtatgataattattttttttttgcaagcatatcaaatactatcaaagagacacatcataaacatacaaataa-ACAC-A-G-AGA--CA---ACT-CAAA-C--ATACGAACTACC----TT--------CT-C------CA------GT--GGTTACT------------TGCTACTTGCTG---CT-------GCGCAA-T-T-----T--ATAATT--AAACAG-AAAAAG-AAA---ATAATAAACAGTTAT--T---C---TA-TTTTAGTT-----AATA--TAC--A-AATTAGTCAAAA-TATTTT----CAACCTCATCCCAG--GCT-TTATCAAAA-CTGGTAT-----ATTTT-AAGTTTTTGAATTGCCAGCA--TATTTTCTCCACAAGAAATTT--AACTTCAAATGA-CATAGT-AAT--CCTATAAGGTT-AGGTTCTT--AC-TCTGCATTTCAAAACAATAAAGACTGTATTGTTT-AACATATAA-AAGTA-TAGAATGTATA-GCTTTACT-ATTAATATACAATGGAATTT-CCACCTTAAT--------ATTA---ATATTTGACACAT---AAACCAACT-CTTCTGACGTTTT--C-TGT---TATA-TGGA-GACTTCAGAATCAATTCCACAATGTTTGGG-TTTT---AACACATG-AAGTAAAGACATGGATCCATTTGTC-TCAACATTATCTGTTACAAAATCTA--CAACAGGTCATTAGTTTTTAAACATTA--TTTTTTGTCAA---GTA-TATCC--ACAGGAATTGATTC-GT-ATAAAATTCTAA-CTGTAACCATTGA-CAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATACT---TGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTCGTAT--TCCACTTTTTTTTTTGCCCA-TGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTC-AAAAATACAGGCATACATGGAATTAATATTTGTTTTAATTTGAA--TTCTATC-AATAGTTTATTACTTCTTAAATATGTTGACAATTGCAG-AATAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAAta
gi|17 : tttttttataaattcatttatttgttgccaAACAGT-AT--T---C---TA-TTT-AGTTAATATAATA--TAC--A-AATCAGTCAAAAATATTTTT---CAACCTCATCCA-G--GC----ATCAAAA
gi|4 : TATTTCT---CAATCTCATCC--AAAGCTGTTATCATAA-CTG-TGC-----ATTTT-ACGTTTTTGAATTGC--GCA--TATTT-CTCCACCA-ATATCTTAA-CTTCAAATGA-CATAGT-A-AGACCTATAAGGTT-AGGTTCTTTCACTTCTGTAT--CAAACAGATAAAAAATGTATTGTT--AACATATAACAATTA-TAAAGTTAA---GCTTTG-TTATTAATAGACAGTG-AATTGAC-------AA--------AT-ATAAATATTCGACACATTTACA-CCAACTCTTTCTGA-AGTTTTTCGTGTATATAT----GAAGA-T-CA-AATCA-TTCCA-AATGTTTGAGTTCTTTTCAATATTTTGAAATAAA-ACATGTATC-ATT-GTC-TCAACATTATTT-GTACAACATCTA-CGAACAG-TCATTAGTCTTTAA-CATT--TTTTTTT-TCAAAc
gi|16 : ---AACATTTT-AAAAAAAGATGTG--TC-ATT-GTC-TCGACATTATT--------AATTTA--CAACAG-TCATT-TGTTTTAT-C--TA---TTTTT-TCAAAta
Alignments
lowQualScore : 111111111111111
lowQualScore : 1111111 11111 22222222 1111 111111 666666666666666 2222222222 1 111111111 111111111 11 1 1111 1111 22 1 11 111 2222 1 11 1 11 666666666 1 1 7777777777777777777777 111 11 22 1 2222 2222 1 1 111 11 1 1111 111 2 22 333 11 2 2 22 22 333 22222 2 222 22 33333333 2 222 222222222222222 1 1 1 2 1 1 22 2 1 1 2 1 1 333 2 22 1 2 1 22 1 2 22 2 11 1 1 44444 22 2
lowQualScore : 3 2222222 3 3 3 3 2 2 2 33 2 5 33 5 2 2 33 2 77777 2 2 5 2 66 22222 8 5 7777 00000000 3 3 0000 222222 44 666666666666666 3 3 3 3 3 5555555555 555 3 6 3 555 99 3 0 1 555555555 6 3 3 555555555 55 55 3 2 0 3 0000 6666 55 7 7 4444 6 6 99 6 3 1 88 11 0 8 0 66 99 777 3333 0 0 0 33 0 33 222222222 0 2 0 0000000000000000000000 2 666 33 00 0 3 3 1111 4444 0 0 2 777 77 8 1 1 2 11 8 8 8 8 0 8 11 8 8 6 8 0 3333 8 777 0 77 4 000 88 0 0 77 77 555 77777 0 111 77 3 66666666 0 111 555555555555555 5 5 5 3 0 4 4 5 5 77 0 5 5 4 0 88 4 5 4 5 555 0 77 5 0 5 77 5 0 77 0 77 5 5 66666 77 0 4
lowQualScore : . ....... . . . . . . . .. . . .. . . . .. . ..... . . . . .. ..... . . .... ........ . . .... ...... .. ............... . . . . . .......... ... . . . ... .. . . . ......... . . . ......... .. .. . . . . .... .... .. . . .... . . .. . . . .. .. . . . .. .. ... .... . . . .. . .. ......... . . . ...................... . ... .. .. . . . .... .... . . . ... .. . . . . .. . . . . . . .. . . . . . .... . ... . .. . ... .. . . .. .. ... ..... . ... .. . ........ . ... ............... . . . . . . . . . .. . . . . . .. . . . . ... . .. . . . .. . . .. . .. . . ..... .. . .
lowQualScore : 3 8888888 3 3 3 3 9 9 9 99 9 7 99 7 9 9 66 9 11111 9 9 7 9 88 99999 6 7 1111 44444444 3 3 4444 999999 66 222222222222222 3 3 3 3 3 6666666666 222 3 7 3 888 22 3 8 5 333333333 7 3 6 222222222 00 99 6 0 1 5 1111 3333 99 1 3 2222 7 7 22 7 2 4 88 22 8 0 0 00 00 555 0000 2 0 2 22 0 22 888888888 5 5 0 2222222222222222222222 0 888 22 88 0 2 2 2222 8888 0 0 5 555 88 0 0 0 8 44 0 0 0 0 8 0 00 0 0 6 0 8 2222 0 000 0 55 0 000 55 0 0 55 55 000 55555 0 555 55 0 55555555 0 000 000000000000000 0 0 0 0 0 0 0 5 5 55 0 5 5 0 0 00 0 5 0 0 000 0 55 5 0 5 55 0 0 55 0 55 5 5 00000 55 0 0
consensus : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTAC-TT-GCTA------CT-TGCT-G-T-GCAGCA-A-T-----T--ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTT-AACTTCAAATGAACATAGTAAT-CCTATAAGG-TTAGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTG-TTTAACATATAA-AATT-ATAAAATTAAT-AGCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATT-AAAACCAACT-TTTCTGAA-TTTTTC-TGTATATAT----GAAG-AC-TCA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GT-CTCAACATTA-TTTGT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CATT--ATTTTTT-TC--AAAGTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
Reference ( family-1558 ) : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTAC-T--GC--------CT-TGCT-G-T-GCAGCA-A-T-----T--ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTT-AACTTCAAATGAACATAGTAAT-CCTATAAGG-TTAGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTG-TTTAACATATAA-AATT-ATAGAGT-----AGCTTTGCTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTCGACACATT-AAAACCAACT-TTTCTGAA-TTTTTC-TGTATATAT----GAAG-A--TCA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CNTNAAATAAAGACGTGTATC-ATT-GT-CTCAACATTA-TTTGT-ACAAAATCTA--C-AACAG-TCATTAGNTTTTAA-CATT--ATTTTTT-TC--AAAGT-ATATCC--ACAGGAATTGATTC-G-TATAAAATTCT-AACTGTAACCATTG-ACAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATA---CTTGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTC--GTATTCCACTTTTTTTTTTGCCC-ATGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTC-AAAAATACAGGCATACATGGAATTAATATTTGTTTTAATTTGAA--TTCTATC-AATAGTTTATTACTTCTTAAATATGTTGACAATTGCAG-AATAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAA
gi|1 : TTTTTTTTATA-AAT-----TCATTTTA-T-TT-TTGT-A-ACA-CCAAG-AGACA-C--T-CA-AACCAT-ACAAAT-----AC-AG-ACA-TAA-AGA--CAATAAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTAC-T-------------T-TGCT-G-TTGCAGGA-A-T-----T--ATAATTTAAAACAG-AAAA-G-AAA---A--TA-ATAAACAGTAT--T-----TCCTA-TTT-AGTT----T--CATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC--G-GCC-TTATCAAAAACT----G-TATATTTT-AGTTTTTGAATTGC-AGCA--TATTT-ATCCACAAGAAATTTTAAACTTCAAATGAACATAGT-AT-CCTATAAGGTTTAGGTTCTTTTACCTCTGCATC---AAAAAAAT-AAAGA-TATATTGTTTTAACATATAA-AATTAATAAAATTAATAAGCTTTA-TATTAATAGACAATGGAATTT-C-------A--------CAT---AATATTTGACACATTAAAAACCAACT-TTTCTGAGTTTTTTC-TGTAT-TATAATGGAAG-AC-TCA-AATCA-TTCCACAATGTTTGGG---GTTTTAACA-CATTAAGTAAAGACATGGATC-ATT-GTCCTCAACATTATTTTGT-ACAAAATCTAACC-AACAG-TCATTATTTTTTAA-CATTAAATTTTTT-TCAAAAAGTAATATCCCAACAAGGAATGATTCTGTTATAAA--TCTAAACTGTAACCATTGAACAGAAGAATCAGTAGTTGTTTTTGAAAACAAAATTTTAAAATACTCCTTGTACTGA---T-ATCACCCACATCCATATGGAG---ATATTCAGATCTTCCAC--------TTGCCCAATGGAAGTTGGGATA---TCTTTTTCATTCAAAAATTGTAAAAATAATTT-TAGAA-ATTTTTCATGCAACAAAATA-GGTGCAAAAAATACAGGCATACATGGATTAAATATTTG-TTTAA-TTGAATGTCCTATCAAATAG-TTA-TACTTCTTAAATATGTTGACATTCGCAGAAATAATGCCATTTAATTTCATTACACATACACCTTGGAGATTGTAATAAGCG-TTGAAACTTTTCTAAGGTTAAGACGTTACAATCAGA-GTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTT-AATAAAGACTGGTTTTTCCAGCTATTTTA-ATATTAAAGAATTATACCA-CACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCTTT--CAAAATGCATTTTTTTTCCTTAAG-AAACA-TCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCATACACAGCAAAAAA
gi|10 : TTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACTT--GCTA------CT-TGCT-G-T-GCAGCA-ATT-----T--ATAATT--CAACAGAAAAA-G-AAA---A--TG-ATAAACAGTA---T-----TC-TA-TTT-AG-T----T--AATA--TAC--A-A-
gi|11 : TTTTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTAAAAA----CATAC-AATT-CA----TT--------CT-C-A----CA------GT--GGTTAC-TT-GCTA------CT-TGCT-G-T-GCAGCA-A-T-----T--G------------A-AAAA-G-AAA---ACTTG-TTAAA---------------------TT-AATT----TTAAAAA--TGC--A-ATTCAGTCCAAat
gi|12 : tttTATT-AAT-----T---TT-A-T-TT-TTGC-A--CA-T--AG-AGCCA-C--TTCA-CA--AT--CAA-C-----TC-AA-ACA-TT---GG--CACTCAAA-----CAT-C-A--T-TC----TT--------CTGC-AA---CA------GT--GGTT-------C--------TTATGCT-G-T-GCAGCA-A-T-----TT-ATAATT--TAACAGCAAAA-G-AAA---A--TA-ATCAACAGTA---T-----TC-TATTTT-AG-T----T--GATA--TATCAA-A-TCAGTC
gi|13 : aTTTTTTTTA----AT-----CCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CA------GT--GGTTACTT--GCTA------CT-TGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---A--TG---CAACGGTAT--t
gi|14 : atTTTTTTTCATA-AAT-----TCAAAT-AAT-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACATTAA-AGAGGCACTCAAA-----CATAC-AATT-Ccgtcatatgtttt
gi|15 : ttTTTTTTTCATA-A-T-----TCAATT-A-T-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-C
gi|16 : aattAACA-TTTTAAAAAAAGATGTGT--C-ATT-GT-CTCGACATTA-TT--------AATTTA--C-AACAG-TCATTTG-TTTTAT-C--T--A-TTTTT-TC--AAAa
gi|17 : tgAACAGTAT--T------C-TA-TTT-AGTTAATAT--AATA--TAC--A-AATCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GC----ATCAAAAtga
gi|2 : TTTTTTTATA-AAT-----TCATTT-A-T-TTGTTGCCA-ACA-C--AG-A-----------------------------------G-ACA-----------ACTCAAA-----CATACGAACTACC----TT--------CT-C------CA------GT--GGTTAC-TT-GCTA------CT-TGCT-GCT-GC-GCA-A-T-----TT-ATAATT--AAACAG-AAAAAG-AAA---A--TA-ATAAACAGTTA--T-----TC-TA-TTTTAGTT-------AATA--TAC--A-AATTAGTCAAAA-TATTTT----CAACCTCATCCCAG-GCT-TTATCAAAA-CT----GGTATATTTTAAGTTTTTGAATTGCCAGCA--TATTTTCTCCACAAGAAATTT--AACTTCAAATGA-CATAGTAAT-CCTATAAGG-TTAGGTTCTT--AC-TCTGCATTTCAAAACA-AT-AAAGACTGTATTG-TTTAACATATAA-AAGT-ATAGAATGTAT-AGCTTTACTATTAATATACAATGGAATTT-CCACCTTAA--------TATT--AATATTTGACACAT---AAACCAACT-CTTCTGAC-GTTTTC-TGT-TATAT----GGAG-ACTTCAGAATCAATTCCACAATGTTTGGG---TTTT-AACA-CATGAAGTAAAGACATGGATCCATTTGT-CTCAACATTA-TCTGTTACAAAATCTA--C-AACAGGTCATTAGTTTTTAAACATT--ATTTTTTGTC---AAGT-ATATCC--ACAGGAATTGATTC-G-TATAAAATTCT-AACTGTAACCATTG-ACAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATA---CTTGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTC--GTATTCCACTTTTTTTTTTGCCC-ATGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTC-AAAAATACAGGCATACATGGAATTAATATTTGTTTTAATTTGAA--TTCTATC-AATAGTTTATTACTTCTTAAATATGTTGACAATTGCAG-AATAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAAc
gi|3 : -A-ACA-T--AG-AGAC--C--T-CA-AAC-AT-ACAA-TCAATTACCAA-ACA-TAG-AGA--CACTCAAA-----TATAC-AATT-CC----TTTCTCC---CC-C-G----CA------GT--GGTTAC-TT-GCTA------CT-TGCT-G-T-ACAGCA-A-T-----TT-ATAATC--AAACAG-AAAAAG-AAA---A--TG-ATAAACAG-AC--T-----TC-TA-TTT-AGTT-------GATA--TAC--ATA-TCAGTCAAAAATATTTTT---CAATCTCATCC-AA-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAGACTATTTT-AACTTCAAATG-ACATAGTAAT-CCTGTAAGG-TTAGGTTCTTT-A-CTCTGCACC---AAACA------------------TTCAAATTATAA-AGTT--TA---T-----AGCTTTGTTATTAATAGACAGTGGAAATT-C-------ACCTAATATGAT---AATATTTGACACATT-AAAACCAAC--TCTCTGAA-TTTTTC-TGTATATAT----GAAGAA--TCA-AATCA-TTCCACAATGTTTGGG---TTTTT--CA-CATGAAATGAAGACATGTATC-ATT-GT-CTCAACATTA-TTTGT-ACAAAATCTA--C-AACCA-TCATTAG-TTTTAA-CATT--AATTTTT-T
gi|4 : taatacaTATTTCT---CAATCTCATCC-AAAGCTGTTATCATAA-CT----G-TGCATTTTACGTTTTTGAATTGC--GCA--TATTT-CTCCACCA-ATATCTT-AACTTCAAATG-ACATAGTAAGACCTATAAGG-TTAGGTTCTTTCACTTCTGTATC---AAACAGATAAAAAA-TGTATTG--TTAACATATAACAATT-ATAAAGTTA---AGCTTTGTTATTAATAGACAGT-GAATTGAC-------A--------AATATAAATATTCGACACATT-TACACCAACTCTTTCTGAAGTTTTTCGTGTATATAT----GAAG-A--TCA-AATCA-TTCCA-AATGTTTGAGTTCTTTTCAATATTTTGAAATAAA-ACATGTATC-ATT-GT-CTCAACATTA-TTTGT-ACAACATCTA--CGAACAG-TCATTAGTCTTTAA-CATT--TTTTTTT-TC--AAAa
gi|5 : TTATTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CATTCAAA-----CATAC-AATT-CC----TT--------CT-C-A----CAGTCACCGT--GGTTACTT--GCTACTTGTACT-TGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---A--TA-ATAAACAGTAT--TCTACATG-TA-TTT-AG-T----T--AATA--TACA-A-A-TCAGTC-AAAATATTTTC---CAACCTCATCC-AG-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACATGATATTTT-AACTTCAAATG-ACATAGTAAT-CCTATAAGta
gi|6 : tta-A-ACA-T--AGGAGACA-C--T-AA-TAC-AT-GCAA-T-----AC-AG-ACATTAA-AGA--CACTCAAA-----CATACAAATT-CCCAATTC--------CC-C-ACCGCCA------GT--GGTTA---------------CT-TGCT-G-T-ACAGCACA-CTTTTGT--ATAAAT--TAACAG-AAAA-G-GAAAACA--TG-ATAAA-AGCATAAT-----TCGTA-TTT-TATT----C--AGTA--TAC--A-
gi|7 : tttttttttttttattcttgtatgataattattttttttttgcaagcatatcaaatactatcaaagagacacatcataaacatacaaataaTTTTTTTTGGATAAT-----TTATTT-A-T-TT-TTG--------------------------A-AAC-AT-ACAA-T-----AC-AA-TTA-TAG-AGA--CACTCAAA-----CATAC-AATT-CC----TTCGCCCGGCCT-C-A----CA------GT--GGTTA---------------CT-TGCT-G-T-GCAACA-ATT-----T--ATCATT--AAACAG-AAAA-ATAAA---A--AA-AAAAAGAG-AA--T-----TC-CA-TTT-AG-T----T--GATA--TACA-A-A-TCTGTCAAAATTGTTTTTTTACAACGTCATCC-AA-ACT-TTAT-GAGAACTGTACG-TGCAATTCAAGTTTTTGAATTGC-AGCATGTATTT-ta
gi|8 : TTTTTCT-TA-A-------TCATTT-A-TATT-TTGC-A-A-A-C--AG-AGA-A-C--TTCA-AAC-ATCACAA-T-----AC-AG-ACA-TAAGAGA--CACAAAAAAAATTTATACCAATTTCC----TT--------CT-C-A----CAC-----GTTGAGTTAC-TT-GCTA------CT-TGCTTG-A-GCAGCA-A-T-----TTTATAATG--AAACAG-AAAA-A-GAA---A--TC-ATAAACAGTATAAT-----TC-TA-TTT-AGCT----T--AATATTTACA-A-A-TCAGTCAA
gi|9 : aTTTTTTTTATA-AATACTGTTCATTT-A-T-TT-T-GC-ATACAAC--AG-AGACA-TCTT-CAGAAC-AT--CAA-T-----AC-AGGACA-TAA-AGAG-CACTAAAAA----CATAC-AATT-CA----TT--------CT-CCA----CA------GT--GGTTAC-TTTGCTA------CT-T-TT-G-T-GTGTCA-G----------AT--TT--GAA----AAAA-G-AAA---ACTTGTTTAAATTATAT--T-----TT-TA-T
Alignments
lowQualScore : 1111111 11111 22222222 1111 111111 1111111 2222222222 1 111111111 111111111 11 1 1111 1111 22 1 11 111 2222 1 11 1 1 1 1 7777777777777777777777 1 11 11 1 1 2222 1 1 1 111 11 111 111 1 11 1 1 11 1 1 11 11 222 222 1 1 222 11 33333333 1 222 555555555555555 1 1 1 1 1 1 11 1 1 1 1 1 1 222 1 11 1 1 1 11 1 1 11 1 11 1 1 22222 11 1
lowQualScore : 3 2222222 3 3 3 3 2 2 2 33 2 5 33 5 2 2 33 2 77777 2 2 5 2 66 22222 8 5 7777 00000000 6 0000 222222 44 3 0000000 3 3 3 3 5555555555 555 6 3 3 555 99 3 0 1 555555555 6 3 3 555555555 55 55 3 2 0 3 0000 6666 55 7 7 4444 6 3 6 99 6 3 1 0 8 11 0 8 0 66 99 777 3333 0 0 0 3 33 0 0 77 0 3 2 0 0000000000000000000000 66 0 33 00 0 0 3 3 1111 8 0 0 0 2 777 77 8 1 0 8 8 8 88 8 11 8 8 0 0 8 8 777 8 777 5 88 1 5 5 88 5 5 88 88 000 111 5 5 111 88 1 66666666 5 111 666666666666666 5 5 5 1 5 1 1 5 5 88 5 5 5 1 5 22 1 5 1 5 111 5 77 5 5 5 88 5 5 88 5 77 5 5 77777 88 5 1
lowQualScore : . ....... . . . . . . . .. . . .. . . . .. . ..... . . . . .. ..... . . .... ........ . .... ...... .. . ....... . . . . .......... ... . . . ... .. . . . ......... . . . ......... .. .. . . . . .... .... .. . . .... . . . .. . . . . . .. . . . .. .. ... .... . . . . .. . . .. . . . . ...................... .. . .. .. . . . . .... . . . . . ... .. . . . . . . .. . .. . . . . . . ... . ... . .. . . . .. . . .. .. ... ... . . ... .. . ........ . ... ............... . . . . . . . . . .. . . . . . .. . . . . ... . .. . . . .. . . .. . .. . . ..... .. . .
lowQualScore : 3 8888888 3 3 3 3 9 9 9 99 9 7 99 7 9 9 66 9 11111 9 9 7 9 88 99999 6 7 1111 44444444 7 4444 999999 66 3 0000000 3 3 3 3 6666666666 222 7 3 3 888 22 3 8 5 333333333 7 3 6 222222222 00 99 6 0 1 5 1111 3333 99 1 3 2222 7 2 7 22 7 2 4 8 0 22 8 0 0 00 00 555 0000 2 0 2 2 22 0 0 22 0 2 5 0 2222222222222222222222 88 0 22 88 0 0 2 2 2222 8 0 0 0 5 555 88 0 4 6 0 0 0 88 0 00 0 0 8 8 0 0 000 0 000 5 00 0 5 5 55 5 5 00 55 555 000 5 5 555 00 0 55555555 5 000 555555555555555 0 0 0 0 5 0 0 5 5 00 5 5 5 0 5 00 0 5 0 0 555 5 55 5 5 5 55 0 5 00 5 55 5 5 00000 00 5 0
consensus : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGAACATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
Reference ( family-1558 ) : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-A-T-----T--ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGAACATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAATTAATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
gi|1 : TTTTTTTTATA-AAT-----TCATTTTA-T-TT-TTGT-A-ACA-CCAAG-AGACA-C--T-CA-AACCAT-ACAAAT-----AC-AG-ACA-TAA-AGA--CAATAAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TT------------TGCT-G-TTGCAGGA-A-T-----T--ATAATTTAAAACAG-AAAA-G-AAA---A--TA-ATAAACAGTAT--T-----TCCTA-TTT-AGTT----T--CATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC--G-GCC-TTATCAAAAACT----G-TATATTTTA-GTTTTTGAATTGC-AGCA--TATTT-ATCCACAAGAAATTTTAAACTTCAAATGAACATAGTA-T-CCTATAAGGTTTAGGTTCTTTTACCTCTGCATC---AAAAAAAT-AAAGA-TATATTGTTTTAACATATAA-AATTAATAAAATTAATAAGCTTTAT-ATTAATAGACAATGGAATTT-C-------A--------CAT---AATATTTGACACATTAAAAACCAACT-TTTCTGAG-TTTTTTC-TGTAT-TATAATGGAAGACT-CA-AATCA-TTCCACAATGTTTGGG---GTTTTAACA-CATTAAGTAAAGACATGGATC-ATT-GTCCTCAACATTATTTTGT-ACAAAATCTAACC-AACAG-TCATTATTTTTTAA-CAT-TAAATTTTTT-TCAAAAAGTAATATCCCAACAAGGAATGATTCTGTTATAAA--TCTAAACTGTAACCATTGAACAGAAGAATCAGTAGTTGTTTTTGAAAACAAAATTTTAAAATACTCCTTGTACTGA---TA-TCACCCACATCCATATGGAGATA---TTCAGATCTTCCACTT--------GCCCAATGGAAGTTGGGATAT---CTTTTTCATTCAAAAATTGTAAAAATAATTT-TAGAA-ATTTTTCATGCAACAAAATAGG-TGCAAAAAATACAGGCATACATGGATTAAATATTTGTTT-AATT-GAATGTCCTATCAAATAGTT-AT-ACTTCTTAAATATGTTGACATTCGCAGAAATAATGCCATTTAATTTCATTACACATACACCTTGGAGATTGTAATAAGCGTT-GAAACTTTTCTAAGGTTAAGACGTTACAATCAGAG-TCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAA-TAAAGACTGGTTTTTCCAGCTATTTTA-ATATTAAAGAATTATACCAC-ACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCTTT--CAAAATGCATTTTTTTTCCTTAAG-AAACA-TCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCATACACAGCAAAAAA
gi|10 : TTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT-----T--ATAATT--CAACAGAAAAA-G-AAA---A--TG-ATAAACAGTA---T-----TC-TA-TTT-AG-T----T--AATA--TAC--A-A-
gi|11 : TTTTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTAAAAA----CATAC-AATT-CA----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-A-T-----T--G------------A-AAAA-G-AAA---ACTTG-TTAAA---------------------TT-AATT----TTAAAAA--TGC--A-ATTCAGTCCAAat
gi|12 : tttTATT-AAT-----T---TT-A-T-TT-TTGC-A--CA-T--AG-AGCCA-C--TTCA-CA--AT--CAA-C-----TC-AA-ACA-TT---GG--CACTCAAA-----CAT-C-A--T-TC----TT--------CTGCAA---CA------GT--GGTT-C-TTA-----------TGCT-G-T-GCAGCA-A-T-----TT-ATAATT--TAACAGCAAAA-G-AAA---A--TA-ATCAACAGTA---T-----TC-TATTTT-AG-T----T--GATA--TATCAA-A-TCAGTC
gi|13 : aTTTTTTTTA----AT-----CCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---A--TG---CAACGGTAT--t
gi|14 : atTTTTTTTCATA-AAT-----TCAAAT-AAT-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACATTAA-AGAGGCACTCAAA-----CATAC-AATT-Ccgtcatatgtttt
gi|15 : ttTTTTTTTCATA-A-T-----TCAATT-A-T-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-C
gi|16 : aattAACA-TTTTAAAAAAAGA--TGTGTC-ATT-GTC-TCGACATTATT---------AATTTA--C-AACAG-TCATTTGTTTT-----ATCTA---TTTTT-TCAAA--a
gi|17 : tgAACAGTAT--T------C-TA-TTT-AGTTAATAT--AATA--TAC--A-AATCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GC----ATCAAAAtga
gi|2 : TTTTTTTATA-AAT-----TCATTT-A-T-TTGTTGCCA-ACA-C--AG-A-----------------------------------G-ACA-----------ACTCAAA-----CATACGAACTACC----TT--------CT-C-----CA------GT--GGTTAC-TTGC------TACTTGCT-GCT-GC-GCA-A-T-----TT-ATAATT--AAACAG-AAAAAG-AAA---A--TA-ATAAACAGTTA--T-----TC-TA-TTTTAGTT-------AATA--TAC--A-AATTAGTCAAAA-TATTTT----CAACCTCATCCCAG-GCT-TTATCAAAA-CT----GGTATATTTTAAGTTTTTGAATTGCCAGCA--TATTTTCTCCACAAGAAATTT-AA-CTTCAAATGA-CATAGTAAT-CCTATAAGGTT-AGGTTCTT--AC-TCTGCATTTCAAAACA-AT-AAAGACTGTATTGTTT-AACATATAA-AAGTA-TAGAATGTATA-GCTTTACTATTAATATACAATGGAATTT-CCACCTTAA--------TATT--AATATTTGACACAT--AAA-CCAACT-CTTCTGAC-GTTTT-C-TGT-TATAT----GGAGACTTCAGAATCAATTCCACAATGTTTGGG---TTTT-AACA-CATGAAGTAAAGACATGGATCCATTTGTC-TCAACATTATCT-GTTACAAAATCTA--C-AACAGGTCATTAGTTTTTAAACAT-TA--TTTTTTGTCAA---GTA-TATCC--ACAGGAATTGATTC-GT-ATAAAATTCTAA-CTGTAACCATTGA-CAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATACT---TGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTC--GTATTCCACTTTTTTTTTTGCCCA-TGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTCAAAAA-TACAGGCATACATGGAATTAATATTTGTTTTAATTTGAAT--TCTATCAA-TAGTTTATTACTTCTTAAATATGTTGACAATTGCAGAA-TAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAAc
gi|3 : -A-ACA-T--AG-AGAC--C--T-CA-AAC-AT-ACAA-TCAATTACCAA-ACA-TAG-AGA--CACTCAAA-----TATAC-AATT-CC----TTTCTCC---CC-CG----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-ACAGCA-ATT-----T--ATAATC--AAACAGAAAAA-G-AAA---A--TG-ATAAACAG-AC--T-----TC-TA-TTT-AG-T----T--GATA--TAC--ATA-TCAGTCAAAAATATTTTT---CAATCTCATCC-AA-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAGACTATTTTAA-CTTCAAATG-ACATAGTAAT-CCTGTAAGGTT-AGGTTCTTT-A-CTCTGCACC---AAACA-----------------TTC---------A-AATTA-TAAAGTTTATA-GCTTTGTTATTAATAGACAGTGGAAATT-C-------ACCTAATATGAT---AATATTTGACACATTAAAA-CCAAC--TCTCTGAA-TTTTT-C-TGTATATAT----GAAGAAT-CA-AATCA-TTCCACAATGTTTGGG---TTTTT--CA-CATGAAATGAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACCA-TCATTAG-TTTTAA-CAT-TA--ATTTTT-T
gi|4 : taatacaTATTTCT---CAATCTCATCC-AAAGCTGTTATCATAA-CT----G-TGCATTTTACGTTTTTGAATTGC--GCA--TATTT-CTCCACCA-ATATCTTAA-CTTCAAATG-ACATAGTAAGACCTATAAGGTT-AGGTTCTTTCACTTCTGTATC---AAACAGATAAAAAA-TGTATTG-TT-AACATATAACAATTA-TAAAGTTA--A-GCTTTGTTATTAATAGACAGT-GAATTGAC-------A--------AATATAAATATTCGACACATTTACA-CCAACTCTTTCTGAAGTTTTT-CGTGTATATAT----GAAGA-T-CA-AATCA-TTCCA-AATGTTTGAGTTCTTTTCAATATTTTGAAATAAA-ACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAACATCTA--CGAACAG-TCATTAGTCTTTAA-CAT-TT--TTTTTT-TCAAA--a
gi|5 : TTATTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CATTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CAGTCACCGT--GGTTAC-TTGCTACTTGTACTTGCT-G-T-GCAGCA-ATT-----T--ATAATT--AAACAGAAAAA-G-AAA---A--TA-ATAAACAGTAT--TCTACATG-TA-TTT-AG-T----T--AATA--TACA-A-A-TCAGTC-AAAATATTTTC---CAACCTCATCC-AG-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACATGATATTTTAA-CTTCAAATG-ACATAGTAAT-CCTATAAGta
gi|6 : tta-A-ACA-T--AGGAGACA-C--T-AA-TAC-AT-GCAA-T-----AC-AG-ACATTAA-AGA--CACTCAAA-----CATACAAATT-CCCAATTC--------CC-CACCGCCA------GT--GGT--------------TACTTGCT-G-T-ACAGCACA-CTTTTGT--ATAAAT--TAACAG-AAAA-G-GAAAACA--TG-ATAAA-AGCATAAT-----TCGTA-TTT-TATT----C--AGTA--TAC--A-
gi|7 : tttttttttttttattcttgtatgataattattttttttttgcaagcatatcaaatactatcaaagagacacatcataaacatacaaataaTTTTTTTTGGATAAT-----TTATTT-A-T-TT-TTG--------------------------A-AAC-AT-ACAA-T-----AC-AA-TTA-TAG-AGA--CACTCAAA-----CATAC-AATT-CC----TTCGCCCGGCCT-CA----CA------GT--GGT--------------TACTTGCT-G-T-GCAACA-ATT-----T--ATCATT--AAACAG-AAAA-ATAAA---A--AA-AAAAAGAG-AA--T-----TC-CA-TTT-AG-T----T--GATA--TACA-A-A-TCTGTCAAAATTGTTTTTTTACAACGTCATCC-AA-ACT-TTAT-GAGAACTGTACG-TGCAATTCAAGTTTTTGAATTGC-AGCATGTATTT-ta
gi|8 : TTTTTCT-TA-A-------TCATTT-A-TATT-TTGC-A-A-A-C--AG-AGA-A-C--TTCA-AAC-ATCACAA-T-----AC-AG-ACA-TAAGAGA--CACAAAAAAAATTTATACCAATTTCC----TT--------CT-CA----CAC-----GTTGAGTTAC-TTGC------TACTTGCTTG-A-GCAGCA-A-T-----TTTATAATG--AAACAG-AAAA-A-GAA---A--TC-ATAAACAGTATAAT-----TC-TA-TTT-AGCT----T--AATATTTACA-A-A-TCAGTCAA
gi|9 : aTTTTTTTTATA-AATACTGTTCATTT-A-T-TT-T-GC-ATACAAC--AG-AGACA-TCTT-CAGAAC-AT--CAA-T-----AC-AGGACA-TAA-AGAG-CACTAAAAA----CATAC-AATT-CA----TT--------CTCCA----CA------GT--GGTTACTTTGC------TACTT-TT-G-T-GTGTCA-G----------AT--TT--GAA----AAAA-G-AAA---ACTTGTTTAAATTATAT--T-----TT-TA-T
Alignments
lowQualScore : 1111111 11111 22222222 1111 111111 1111111 1 111111111 111111111 11 1 1111 1111 22 1 11 111 2222 1 11 1 1 1 1 7777777777777777777777 1 11 11 1 1 2222 1 1 1 111 11 111 111 1 11 1 1 11 1 1 11 11 222 222 1 1 222 11 33333333 1 222 555555555555555 1 1 1 1 1 1 11 1 1 1 1 1 1 222 1 11 1 1 1 11 1 1 11 1 11 1 1 22222 11 1
lowQualScore : 3 2222222 3 3 3 3 2 2 2 33 2 5 33 5 2 2 33 2 77777 2 2 5 2 66 22222 8 5 7777 00000000 6 0000 222222 44 3 0000000 3 3 3 6 777777 555 6 3 3 555 99 3 0 1 555555555 6 3 3 555555555 55 55 3 2 0 3 0000 6666 55 7 7 4444 6 3 6 99 6 3 1 0 8 11 0 8 0 66 99 777 3333 0 0 0 3 33 0 0 44 0 3 2 0 0000000000000000000000 66 0 33 00 0 0 3 3 1111 8 0 0 0 2 777 77 8 1 0 8 8 8 88 8 11 8 8 0 0 8 8 777 8 777 5 88 1 5 5 88 5 5 88 88 000 111 5 5 111 88 1 66666666 5 111 666666666666666 5 5 5 1 5 1 1 5 5 88 5 5 5 1 5 22 1 5 1 5 111 5 77 5 5 5 88 5 5 88 5 77 5 5 77777 88 5 1
lowQualScore : . ....... . . . . . . . .. . . .. . . . .. . ..... . . . . .. ..... . . .... ........ . .... ...... .. . ....... . . . . ...... ... . . . ... .. . . . ......... . . . ......... .. .. . . . . .... .... .. . . .... . . . .. . . . . . .. . . . .. .. ... .... . . . . .. . . .. . . . . ...................... .. . .. .. . . . . .... . . . . . ... .. . . . . . . .. . .. . . . . . . ... . ... . .. . . . .. . . .. .. ... ... . . ... .. . ........ . ... ............... . . . . . . . . . .. . . . . . .. . . . . ... . .. . . . .. . . .. . .. . . ..... .. . .
lowQualScore : 3 8888888 3 3 3 3 9 9 9 99 9 7 99 7 9 9 66 9 11111 9 9 7 9 88 99999 6 7 1111 44444444 7 4444 999999 66 3 0000000 3 3 3 7 555555 999 7 3 3 888 22 3 8 5 333333333 7 3 6 222222222 00 99 6 0 1 5 1111 3333 99 1 3 2222 7 2 7 22 7 2 4 8 0 22 8 0 0 00 00 555 0000 2 0 2 2 22 0 0 22 0 2 5 0 2222222222222222222222 88 0 22 88 0 0 2 2 2222 8 0 0 0 5 555 88 0 4 6 0 0 0 88 0 00 0 0 8 8 0 0 000 0 000 5 00 0 5 5 55 5 5 00 55 555 000 5 5 555 00 0 55555555 5 000 555555555555555 0 0 0 0 5 0 0 5 5 00 5 5 5 0 5 00 0 5 0 0 555 5 55 5 5 5 55 0 5 00 5 55 5 5 00000 00 5 0
consensus : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGAACATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
Reference ( family-1558 ) : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGAACATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
gi|1 : TTTTTTTTATA-AAT-----TCATTTTA-T-TT-TTGT-A-ACA-CCAAG-AGACA-C--T-CA-AACCAT-ACAAAT-----AC-AG-ACA-TAA-AGA--CAATAAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TT------------TGCT-G-TTGCAGGA-ATT------ATAATTTAAAACAG-AAAA-G-AAA---A--TA-ATAAACAGTAT--T-----TCCTA-TTT-AGTT----T--CATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC--G-GCC-TTATCAAAAACT----G-TATATTTTA-GTTTTTGAATTGC-AGCA--TATTT-ATCCACAAGAAATTTTAAACTTCAAATGAACATAGTA-T-CCTATAAGGTTTAGGTTCTTTTACCTCTGCATC---AAAAAAAT-AAAGA-TATATTGTTTTAACATATAA-AATTAATAAAATTAATAAGCTTTAT-ATTAATAGACAATGGAATTT-C-------A--------CAT---AATATTTGACACATTAAAAACCAACT-TTTCTGAG-TTTTTTC-TGTAT-TATAATGGAAGACT-CA-AATCA-TTCCACAATGTTTGGG---GTTTTAACA-CATTAAGTAAAGACATGGATC-ATT-GTCCTCAACATTATTTTGT-ACAAAATCTAACC-AACAG-TCATTATTTTTTAA-CAT-TAAATTTTTT-TCAAAAAGTAATATCCCAACAAGGAATGATTCTGTTATAAA--TCTAAACTGTAACCATTGAACAGAAGAATCAGTAGTTGTTTTTGAAAACAAAATTTTAAAATACTCCTTGTACTGA---TA-TCACCCACATCCATATGGAGATA---TTCAGATCTTCCACTT--------GCCCAATGGAAGTTGGGATAT---CTTTTTCATTCAAAAATTGTAAAAATAATTT-TAGAA-ATTTTTCATGCAACAAAATAGG-TGCAAAAAATACAGGCATACATGGATTAAATATTTGTTT-AATT-GAATGTCCTATCAAATAGTT-AT-ACTTCTTAAATATGTTGACATTCGCAGAAATAATGCCATTTAATTTCATTACACATACACCTTGGAGATTGTAATAAGCGTT-GAAACTTTTCTAAGGTTAAGACGTTACAATCAGAG-TCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAA-TAAAGACTGGTTTTTCCAGCTATTTTA-ATATTAAAGAATTATACCAC-ACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCTTT--CAAAATGCATTTTTTTTCCTTAAG-AAACA-TCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCATACACAGCAAAAAA
gi|10 : TTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--CAACAGAAAAA-G-AAA---A--TG-ATAAACAGTA---T-----TC-TA-TTT-AG-T----T--AATA--TAC--A-A-
gi|11 : TTTTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTAAAAA----CATAC-AATT-CA----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----G-A--------------AAAA-G-AAA---ACTTG-TTAAA---------------------TT-AATT----TTAAAAA--TGC--A-ATTCAGTCCAAat
gi|12 : tttTATT-AAT-----T---TT-A-T-TT-TTGC-A--CA-T--AG-AGCCA-C--TTCA-CA--AT--CAA-C-----TC-AA-ACA-TT---GG--CACTCAAA-----CAT-C-A--T-TC----TT--------CTGCAA---CA------GT--GGTT-C-TTA-----------TGCT-G-T-GCAGCA-ATT----T-ATAATT--TAACAGCAAAA-G-AAA---A--TA-ATCAACAGTA---T-----TC-TATTTT-AG-T----T--GATA--TATCAA-A-TCAGTC
gi|13 : aTTTTTTTTA----AT-----CCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAGAAAAA-G-AAA---A--TG---CAACGGTAT--t
gi|14 : atTTTTTTTCATA-AAT-----TCAAAT-AAT-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACATTAA-AGAGGCACTCAAA-----CATAC-AATT-Ccgtcatatgtttt
gi|15 : ttTTTTTTTCATA-A-T-----TCAATT-A-T-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-C
gi|16 : aattAACA-TTTTAAAAAAAGA--TGTGTC-ATT-GTC-TCGACATTATT---------AATTTA--C-AACAG-TCATTTGTTTT-----ATCTA---TTTTT-TCAAA--a
gi|17 : tgAACAGTAT--T------C-TA-TTT-AGTTAATAT--AATA--TAC--A-AATCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GC----ATCAAAAtga
gi|2 : TTTTTTTATA-AAT-----TCATTT-A-T-TTGTTGCCA-ACA-C--AG-A-----------------------------------G-ACA-----------ACTCAAA-----CATACGAACTACC----TT--------CT-C-----CA------GT--GGTTAC-TTGC------TACTTGCT-GCT-GC-GCA-ATT----T-ATAATT--AAACAG-AAAAAG-AAA---A--TA-ATAAACAGTTA--T-----TC-TA-TTTTAGTT-------AATA--TAC--A-AATTAGTCAAAA-TATTTT----CAACCTCATCCCAG-GCT-TTATCAAAA-CT----GGTATATTTTAAGTTTTTGAATTGCCAGCA--TATTTTCTCCACAAGAAATTT-AA-CTTCAAATGA-CATAGTAAT-CCTATAAGGTT-AGGTTCTT--AC-TCTGCATTTCAAAACA-AT-AAAGACTGTATTGTTT-AACATATAA-AAGTA-TAGAATGTATA-GCTTTACTATTAATATACAATGGAATTT-CCACCTTAA--------TATT--AATATTTGACACAT--AAA-CCAACT-CTTCTGAC-GTTTT-C-TGT-TATAT----GGAGACTTCAGAATCAATTCCACAATGTTTGGG---TTTT-AACA-CATGAAGTAAAGACATGGATCCATTTGTC-TCAACATTATCT-GTTACAAAATCTA--C-AACAGGTCATTAGTTTTTAAACAT-TA--TTTTTTGTCAA---GTA-TATCC--ACAGGAATTGATTC-GT-ATAAAATTCTAA-CTGTAACCATTGA-CAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATACT---TGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTC--GTATTCCACTTTTTTTTTTGCCCA-TGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTCAAAAA-TACAGGCATACATGGAATTAATATTTGTTTTAATTTGAAT--TCTATCAA-TAGTTTATTACTTCTTAAATATGTTGACAATTGCAGAA-TAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAAc
gi|3 : -A-ACA-T--AG-AGAC--C--T-CA-AAC-AT-ACAA-TCAATTACCAA-ACA-TAG-AGA--CACTCAAA-----TATAC-AATT-CC----TTTCTCC---CC-CG----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-ACAGCA-ATT----T-ATAATC--AAACAGAAAAA-G-AAA---A--TG-ATAAACAG-AC--T-----TC-TA-TTT-AG-T----T--GATA--TAC--ATA-TCAGTCAAAAATATTTTT---CAATCTCATCC-AA-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAGACTATTTTAA-CTTCAAATG-ACATAGTAAT-CCTGTAAGGTT-AGGTTCTTT-A-CTCTGCACC---AAACA-----------------TTC---------A-AATTA-TAAAGTTTATA-GCTTTGTTATTAATAGACAGTGGAAATT-C-------ACCTAATATGAT---AATATTTGACACATTAAAA-CCAAC--TCTCTGAA-TTTTT-C-TGTATATAT----GAAGAAT-CA-AATCA-TTCCACAATGTTTGGG---TTTTT--CA-CATGAAATGAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACCA-TCATTAG-TTTTAA-CAT-TA--ATTTTT-T
gi|4 : taatacaTATTTCT---CAATCTCATCC-AAAGCTGTTATCATAA-CT----G-TGCATTTTACGTTTTTGAATTGC--GCA--TATTT-CTCCACCA-ATATCTTAA-CTTCAAATG-ACATAGTAAGACCTATAAGGTT-AGGTTCTTTCACTTCTGTATC---AAACAGATAAAAAA-TGTATTG-TT-AACATATAACAATTA-TAAAGTTA--A-GCTTTGTTATTAATAGACAGT-GAATTGAC-------A--------AATATAAATATTCGACACATTTACA-CCAACTCTTTCTGAAGTTTTT-CGTGTATATAT----GAAGA-T-CA-AATCA-TTCCA-AATGTTTGAGTTCTTTTCAATATTTTGAAATAAA-ACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAACATCTA--CGAACAG-TCATTAGTCTTTAA-CAT-TT--TTTTTT-TCAAA--a
gi|5 : TTATTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CATTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CAGTCACCGT--GGTTAC-TTGCTACTTGTACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAGAAAAA-G-AAA---A--TA-ATAAACAGTAT--TCTACATG-TA-TTT-AG-T----T--AATA--TACA-A-A-TCAGTC-AAAATATTTTC---CAACCTCATCC-AG-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACATGATATTTTAA-CTTCAAATG-ACATAGTAAT-CCTATAAGta
gi|6 : tta-A-ACA-T--AGGAGACA-C--T-AA-TAC-AT-GCAA-T-----AC-AG-ACATTAA-AGA--CACTCAAA-----CATACAAATT-CCCAATTC--------CC-CACCGCCA------GT--GGT--------------TACTTGCT-G-T-ACAGCACACTTTTGT-ATAAAT--TAACAG-AAAA-G-GAAAACA--TG-ATAAA-AGCATAAT-----TCGTA-TTT-TATT----C--AGTA--TAC--A-
gi|7 : tttttttttttttattcttgtatgataattattttttttttgcaagcatatcaaatactatcaaagagacacatcataaacatacaaataaTTTTTTTTGGATAAT-----TTATTT-A-T-TT-TTG--------------------------A-AAC-AT-ACAA-T-----AC-AA-TTA-TAG-AGA--CACTCAAA-----CATAC-AATT-CC----TTCGCCCGGCCT-CA----CA------GT--GGT--------------TACTTGCT-G-T-GCAACA-ATT----T-ATCATT--AAACAG-AAAA-ATAAA---A--AA-AAAAAGAG-AA--T-----TC-CA-TTT-AG-T----T--GATA--TACA-A-A-TCTGTCAAAATTGTTTTTTTACAACGTCATCC-AA-ACT-TTAT-GAGAACTGTACG-TGCAATTCAAGTTTTTGAATTGC-AGCATGTATTT-ta
gi|8 : TTTTTCT-TA-A-------TCATTT-A-TATT-TTGC-A-A-A-C--AG-AGA-A-C--TTCA-AAC-ATCACAA-T-----AC-AG-ACA-TAAGAGA--CACAAAAAAAATTTATACCAATTTCC----TT--------CT-CA----CAC-----GTTGAGTTAC-TTGC------TACTTGCTTG-A-GCAGCA-ATT----TTATAATG--AAACAG-AAAA-A-GAA---A--TC-ATAAACAGTATAAT-----TC-TA-TTT-AGCT----T--AATATTTACA-A-A-TCAGTCAA
gi|9 : aTTTTTTTTATA-AATACTGTTCATTT-A-T-TT-T-GC-ATACAAC--AG-AGACA-TCTT-CAGAAC-AT--CAA-T-----AC-AGGACA-TAA-AGAG-CACTAAAAA----CATAC-AATT-CA----TT--------CTCCA----CA------GT--GGTTACTTTGC------TACTT-TT-G-T-GTGTCAGATT----T-G-----------AA-AAAA-G-AAA---ACTTGTTTAAATTATAT--T-----TT-TA-T
Alignments
lowQualScore : 1111111 11111 22222222 1111 111111 1111111 1 111111111 111111111 11 1 1111 1111 22 1 11 111 2222 1 11 1 1 1 1 7777777777777777777777 1 11 11 1 1 2222 1 1 1 111 11 111 111 1 11 1 1 11 1 1 11 11 222 222 1 1 222 11 33333333 1 222 555555555555555 1 1 1 1 1 1 11 1 1 1 1 1 1 222 1 11 1 1 1 11 1 1 11 1 11 1 1 22222 11 1
lowQualScore : 3 2222222 3 3 3 3 2 2 2 33 2 5 33 5 2 2 33 2 77777 2 2 5 2 66 22222 8 5 7777 00000000 6 0000 222222 44 3 0000000 3 3 3 6 777777 555 6 3 3 555 99 3 0 1 555555555 6 3 3 555555555 55 55 3 2 0 3 0000 6666 55 7 7 4444 6 3 6 99 6 3 1 0 8 11 0 8 0 66 99 777 3333 0 0 0 3 33 0 0 44 0 3 2 0 0000000000000000000000 66 0 33 00 0 0 3 3 1111 8 0 0 0 2 777 77 8 1 0 8 8 8 88 8 11 8 8 0 0 8 8 777 8 777 5 88 1 5 5 88 5 5 88 88 000 111 5 5 111 88 1 66666666 5 111 666666666666666 5 5 5 1 5 1 1 5 5 88 5 5 5 1 5 22 1 5 1 5 111 5 77 5 5 5 88 5 5 88 5 77 5 5 77777 88 5 1
lowQualScore : . ....... . . . . . . . .. . . .. . . . .. . ..... . . . . .. ..... . . .... ........ . .... ...... .. . ....... . . . . ...... ... . . . ... .. . . . ......... . . . ......... .. .. . . . . .... .... .. . . .... . . . .. . . . . . .. . . . .. .. ... .... . . . . .. . . .. . . . . ...................... .. . .. .. . . . . .... . . . . . ... .. . . . . . . .. . .. . . . . . . ... . ... . .. . . . .. . . .. .. ... ... . . ... .. . ........ . ... ............... . . . . . . . . . .. . . . . . .. . . . . ... . .. . . . .. . . .. . .. . . ..... .. . .
lowQualScore : 3 8888888 3 3 3 3 9 9 9 99 9 7 99 7 9 9 66 9 11111 9 9 7 9 88 99999 6 7 1111 44444444 7 4444 999999 66 3 0000000 3 3 3 7 555555 999 7 3 3 888 22 3 8 5 333333333 7 3 6 222222222 00 99 6 0 1 5 1111 3333 99 1 3 2222 7 2 7 22 7 2 4 8 0 22 8 0 0 00 00 555 0000 2 0 2 2 22 0 0 22 0 2 5 0 2222222222222222222222 88 0 22 88 0 0 2 2 2222 8 0 0 0 5 555 88 0 4 6 0 0 0 88 0 00 0 0 8 8 0 0 000 0 000 5 00 0 5 5 55 5 5 00 55 555 000 5 5 555 00 0 55555555 5 000 555555555555555 0 0 0 0 5 0 0 5 5 00 5 5 5 0 5 00 0 5 0 0 555 5 55 5 5 5 55 0 5 00 5 55 5 5 00000 00 5 0
consensus : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGAACATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
Reference ( family-1558 ) : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGAACATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
gi|1 : TTTTTTTTATA-AAT-----TCATTTTA-T-TT-TTGT-A-ACA-CCAAG-AGACA-C--T-CA-AACCAT-ACAAAT-----AC-AG-ACA-TAA-AGA--CAATAAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TT------------TGCT-G-TTGCAGGA-ATT------ATAATTTAAAACAG-AAAA-G-AAA---A--TA-ATAAACAGTAT--T-----TCCTA-TTT-AGTT----T--CATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC--G-GCC-TTATCAAAAACT----G-TATATTTTA-GTTTTTGAATTGC-AGCA--TATTT-ATCCACAAGAAATTTTAAACTTCAAATGAACATAGTA-T-CCTATAAGGTTTAGGTTCTTTTACCTCTGCATC---AAAAAAAT-AAAGA-TATATTGTTTTAACATATAA-AATTAATAAAATTAATAAGCTTTAT-ATTAATAGACAATGGAATTT-C-------A--------CAT---AATATTTGACACATTAAAAACCAACT-TTTCTGAG-TTTTTTC-TGTAT-TATAATGGAAGACT-CA-AATCA-TTCCACAATGTTTGGG---GTTTTAACA-CATTAAGTAAAGACATGGATC-ATT-GTCCTCAACATTATTTTGT-ACAAAATCTAACC-AACAG-TCATTATTTTTTAA-CAT-TAAATTTTTT-TCAAAAAGTAATATCCCAACAAGGAATGATTCTGTTATAAA--TCTAAACTGTAACCATTGAACAGAAGAATCAGTAGTTGTTTTTGAAAACAAAATTTTAAAATACTCCTTGTACTGA---TA-TCACCCACATCCATATGGAGATA---TTCAGATCTTCCACTT--------GCCCAATGGAAGTTGGGATAT---CTTTTTCATTCAAAAATTGTAAAAATAATTT-TAGAA-ATTTTTCATGCAACAAAATAGG-TGCAAAAAATACAGGCATACATGGATTAAATATTTGTTT-AATT-GAATGTCCTATCAAATAGTT-AT-ACTTCTTAAATATGTTGACATTCGCAGAAATAATGCCATTTAATTTCATTACACATACACCTTGGAGATTGTAATAAGCGTT-GAAACTTTTCTAAGGTTAAGACGTTACAATCAGAG-TCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAA-TAAAGACTGGTTTTTCCAGCTATTTTA-ATATTAAAGAATTATACCAC-ACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCTTT--CAAAATGCATTTTTTTTCCTTAAG-AAACA-TCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCATACACAGCAAAAAA
gi|10 : TTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--CAACAGAAAAA-G-AAA---A--TG-ATAAACAGTA---T-----TC-TA-TTT-AG-T----T--AATA--TAC--A-A-
gi|11 : TTTTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTAAAAA----CATAC-AATT-CA----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----G-A--------------AAAA-G-AAA---ACTTG-TTAAA---------------------TT-AATT----TTAAAAA--TGC--A-ATTCAGTCCAAat
gi|12 : tttTATT-AAT-----T---TT-A-T-TT-TTGC-A--CA-T--AG-AGCCA-C--TTCA-CA--AT--CAA-C-----TC-AA-ACA-TT---GG--CACTCAAA-----CAT-C-A--T-TC----TT--------CTGCAA---CA------GT--GGTT-C-TTA-----------TGCT-G-T-GCAGCA-ATT----T-ATAATT--TAACAGCAAAA-G-AAA---A--TA-ATCAACAGTA---T-----TC-TATTTT-AG-T----T--GATA--TATCAA-A-TCAGTC
gi|13 : aTTTTTTTTA----AT-----CCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAGAAAAA-G-AAA---A--TG---CAACGGTAT--t
gi|14 : atTTTTTTTCATA-AAT-----TCAAAT-AAT-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACATTAA-AGAGGCACTCAAA-----CATAC-AATT-Ccgtcatatgtttt
gi|15 : ttTTTTTTTCATA-A-T-----TCAATT-A-T-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-C
gi|16 : aattAACA-TTTTAAAAAAAGA--TGTGTC-ATT-GTC-TCGACATTATT---------AATTTA--C-AACAG-TCATTTGTTTT-----ATCTA---TTTTT-TCAAA--a
gi|17 : tgAACAGTAT--T------C-TA-TTT-AGTTAATAT--AATA--TAC--A-AATCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GC----ATCAAAAtga
gi|2 : TTTTTTTATA-AAT-----TCATTT-A-T-TTGTTGCCA-ACA-C--AG-A-----------------------------------G-ACA-----------ACTCAAA-----CATACGAACTACC----TT--------CT-C-----CA------GT--GGTTAC-TTGC------TACTTGCT-GCT-GC-GCA-ATT----T-ATAATT--AAACAG-AAAAAG-AAA---A--TA-ATAAACAGTTA--T-----TC-TA-TTTTAGTT-------AATA--TAC--A-AATTAGTCAAAA-TATTTT----CAACCTCATCCCAG-GCT-TTATCAAAA-CT----GGTATATTTTAAGTTTTTGAATTGCCAGCA--TATTTTCTCCACAAGAAATTT-AA-CTTCAAATGA-CATAGTAAT-CCTATAAGGTT-AGGTTCTT--AC-TCTGCATTTCAAAACA-AT-AAAGACTGTATTGTTT-AACATATAA-AAGTA-TAGAATGTATA-GCTTTACTATTAATATACAATGGAATTT-CCACCTTAA--------TATT--AATATTTGACACAT--AAA-CCAACT-CTTCTGAC-GTTTT-C-TGT-TATAT----GGAGACTTCAGAATCAATTCCACAATGTTTGGG---TTTT-AACA-CATGAAGTAAAGACATGGATCCATTTGTC-TCAACATTATCT-GTTACAAAATCTA--C-AACAGGTCATTAGTTTTTAAACAT-TA--TTTTTTGTCAA---GTA-TATCC--ACAGGAATTGATTC-GT-ATAAAATTCTAA-CTGTAACCATTGA-CAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATACT---TGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTC--GTATTCCACTTTTTTTTTTGCCCA-TGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTCAAAAA-TACAGGCATACATGGAATTAATATTTGTTTTAATTTGAAT--TCTATCAA-TAGTTTATTACTTCTTAAATATGTTGACAATTGCAGAA-TAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAAc
gi|3 : -A-ACA-T--AG-AGAC--C--T-CA-AAC-AT-ACAA-TCAATTACCAA-ACA-TAG-AGA--CACTCAAA-----TATAC-AATT-CC----TTTCTCC---CC-CG----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-ACAGCA-ATT----T-ATAATC--AAACAGAAAAA-G-AAA---A--TG-ATAAACAG-AC--T-----TC-TA-TTT-AG-T----T--GATA--TAC--ATA-TCAGTCAAAAATATTTTT---CAATCTCATCC-AA-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAGACTATTTTAA-CTTCAAATG-ACATAGTAAT-CCTGTAAGGTT-AGGTTCTTT-A-CTCTGCACC---AAACA-----------------TTC---------A-AATTA-TAAAGTTTATA-GCTTTGTTATTAATAGACAGTGGAAATT-C-------ACCTAATATGAT---AATATTTGACACATTAAAA-CCAAC--TCTCTGAA-TTTTT-C-TGTATATAT----GAAGAAT-CA-AATCA-TTCCACAATGTTTGGG---TTTTT--CA-CATGAAATGAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACCA-TCATTAG-TTTTAA-CAT-TA--ATTTTT-T
gi|4 : taatacaTATTTCT---CAATCTCATCC-AAAGCTGTTATCATAA-CT----G-TGCATTTTACGTTTTTGAATTGC--GCA--TATTT-CTCCACCA-ATATCTTAA-CTTCAAATG-ACATAGTAAGACCTATAAGGTT-AGGTTCTTTCACTTCTGTATC---AAACAGATAAAAAA-TGTATTG-TT-AACATATAACAATTA-TAAAGTTA--A-GCTTTGTTATTAATAGACAGT-GAATTGAC-------A--------AATATAAATATTCGACACATTTACA-CCAACTCTTTCTGAAGTTTTT-CGTGTATATAT----GAAGA-T-CA-AATCA-TTCCA-AATGTTTGAGTTCTTTTCAATATTTTGAAATAAA-ACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAACATCTA--CGAACAG-TCATTAGTCTTTAA-CAT-TT--TTTTTT-TCAAA--a
gi|5 : TTATTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CATTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CAGTCACCGT--GGTTAC-TTGCTACTTGTACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAGAAAAA-G-AAA---A--TA-ATAAACAGTAT--TCTACATG-TA-TTT-AG-T----T--AATA--TACA-A-A-TCAGTC-AAAATATTTTC---CAACCTCATCC-AG-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACATGATATTTTAA-CTTCAAATG-ACATAGTAAT-CCTATAAGta
gi|6 : tta-A-ACA-T--AGGAGACA-C--T-AA-TAC-AT-GCAA-T-----AC-AG-ACATTAA-AGA--CACTCAAA-----CATACAAATT-CCCAATTC--------CC-CACCGCCA------GT--GGT--------------TACTTGCT-G-T-ACAGCACACTTTTGT-ATAAAT--TAACAG-AAAA-G-GAAAACA--TG-ATAAA-AGCATAAT-----TCGTA-TTT-TATT----C--AGTA--TAC--A-
gi|7 : tttttttttttttattcttgtatgataattattttttttttgcaagcatatcaaatactatcaaagagacacatcataaacatacaaataaTTTTTTTTGGATAAT-----TTATTT-A-T-TT-TTG--------------------------A-AAC-AT-ACAA-T-----AC-AA-TTA-TAG-AGA--CACTCAAA-----CATAC-AATT-CC----TTCGCCCGGCCT-CA----CA------GT--GGT--------------TACTTGCT-G-T-GCAACA-ATT----T-ATCATT--AAACAG-AAAA-ATAAA---A--AA-AAAAAGAG-AA--T-----TC-CA-TTT-AG-T----T--GATA--TACA-A-A-TCTGTCAAAATTGTTTTTTTACAACGTCATCC-AA-ACT-TTAT-GAGAACTGTACG-TGCAATTCAAGTTTTTGAATTGC-AGCATGTATTT-ta
gi|8 : TTTTTCT-TA-A-------TCATTT-A-TATT-TTGC-A-A-A-C--AG-AGA-A-C--TTCA-AAC-ATCACAA-T-----AC-AG-ACA-TAAGAGA--CACAAAAAAAATTTATACCAATTTCC----TT--------CT-CA----CAC-----GTTGAGTTAC-TTGC------TACTTGCTTG-A-GCAGCA-ATT----TTATAATG--AAACAG-AAAA-A-GAA---A--TC-ATAAACAGTATAAT-----TC-TA-TTT-AGCT----T--AATATTTACA-A-A-TCAGTCAA
gi|9 : aTTTTTTTTATA-AATACTGTTCATTT-A-T-TT-T-GC-ATACAAC--AG-AGACA-TCTT-CAGAAC-AT--CAA-T-----AC-AGGACA-TAA-AGAG-CACTAAAAA----CATAC-AATT-CA----TT--------CTCCA----CA------GT--GGTTACTTTGC------TACTT-TT-G-T-GTGTCAGATT----T-G-----------AA-AAAA-G-AAA---ACTTGTTTAAATTATAT--T-----TT-TA-T
blockSeqs : T ATACTGT . A A G C T A . G A CT T G . CA . CAATT C G T G GG AAATT G A CAAT CGCCCGGC G CCGC GTCACC TG T CTACTTG T C . C TTTGT C A A T AAC CT T T TTCTACA G T T TTAATAT TT CA T T A TTTA CAG TG A A GTAC G A C TG T G A . A A . TC CT TCA GATA C T A C . TA . T G A CACCTTAATATT TA . TC AG . G A A . C T G A C TTC CA T T C T . T T . G G A C T G A . . T . . AT . . . . . AAC A . ATA . A TTTTTTTT . TCT . G C G T . A T T T . . T T A . AT T T T G . . . A . T . C . . . GC A T A . . A
blockSeqs : . AT . . . . . . . . . A . T . . A . . . . T . G A A T . TCTCC C A C . . C . . . G TT T C . . . CT . T TAAT . . . TTTTA . A . A A T AAA T A A . . A . . . A T . A . . T C . AT . T A . . TA . T G . ACCTAATATGAT TT . T C . . A A . A . . . C . A . A . . . T . . . . . . A . A
blockSeqs : . AT . . . . . . . . . . . . . . A . . . . . . . A C . . . . . . . . C . . . . T A A . . . . . T TAAT . . . TTC . A . A A T AG T A A . . C . . . G T . A . . . C . . . . . . . A . T . . AAATATA . . . A . . . A . . . . . . . T . A . . . T . . . . . . T . .
blockSeqs : . AT . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . C . . . . G A A . . . . . T TT . . . CTT . A . . T T AA T G . . . A . . . . T . A . . T . . . . . . . . . . . .
blockSeqs : . AT . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . C . . . . T A A . . . . . T AT . . . TT . . . . . C AG T . . . . A . . .
blockSeqs : . AT . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . C . . . . T A . . . . . . T CT . . . TT . . . . . AA . .
blockSeqs : . T . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . C . . . . T T . . . . . . C AT . . . TT . . . .
blockSeqs : . T . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . C . . . . T A . . . . . . T TT . . . TT . . . .
blockSeqs : . T . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . T A . . . . . . T T . . . TT . . . .
blockSeqs : . T . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . T . . . TT . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . .
blockSeqCons : ** C****** T***** A** TT******* AG** A* T* ** T**
originalCons : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT----T--AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGAACATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
finalCons : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT--------CT-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATTT-----ATAATTA--AACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AGTT-------AATA--TAC--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCCAG--GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGA-CATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGAT-AAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TAT--TTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
Alignments
lowQualScore : 1111111 11111 1111111111 1111 111111 1111111 1 111 11111111 1 1111 1111 1 11 111 222222222 222 1 1 1 1 7777777777777777777777 1 11 11 1 1 2222 1 1 1 111 11 111 111 1 11 1 1 11 1 1 11 11 222 222 1 1 222 11 33333333 1 222 555555555555555 1 1 1 1 1 1 11 1 1 1 1 1 1 222 1 11 1 1 1 11 1 1 11 1 11 1 1 22222 11 1
lowQualScore : 3 2222222 3 3 3 3 2 2 2 33 2 5 33 5 2 2 33 2 77777 2 2 5 2 66 22222 8 5 7777 88888 2222222222 0000 222222 44 3 0000000 3 3 3 6 777777 555 6 3 3 555 99 3 444 88888 6 6 3 3 3 55 66666666 3 2 0 3 0000 6666 55 7 7 4444 6 3 6 99 6 3 1 0 8 8 0 8 0 66 99 777 111111111 0 000 0 0 44 0 3 2 0 0000000000000000000000 66 0 33 00 0 0 3 3 1111 8 0 0 0 2 777 77 8 1 0 8 8 8 88 8 11 8 8 0 0 8 8 777 8 777 5 88 1 5 5 88 5 5 88 88 000 111 5 5 111 88 1 66666666 5 111 666666666666666 5 5 5 1 5 1 1 5 5 88 5 5 5 1 5 22 1 5 1 5 111 5 77 5 5 5 88 5 5 88 5 77 5 5 77777 88 5 1
lowQualScore : . ....... . . . . . . . .. . . .. . . . .. . ..... . . . . .. ..... . . .... ..... .......... .... ...... .. . ....... . . . . ...... ... . . . ... .. . ... ..... . . . . . .. ........ . . . . .... .... .. . . .... . . . .. . . . . . . . . . .. .. ... ......... . ... . . .. . . . . ...................... .. . .. .. . . . . .... . . . . . ... .. . . . . . . .. . .. . . . . . . ... . ... . .. . . . .. . . .. .. ... ... . . ... .. . ........ . ... ............... . . . . . . . . . .. . . . . . .. . . . . ... . .. . . . .. . . .. . .. . . ..... .. . .
lowQualScore : 3 8888888 3 3 3 3 9 9 9 99 9 7 99 7 9 9 66 9 11111 9 9 7 9 88 99999 6 7 1111 33333 2222222222 4444 999999 66 3 0000000 3 3 3 7 555555 999 7 3 3 888 22 3 222 33333 7 7 6 6 6 00 55555555 6 0 1 5 1111 3333 99 1 3 2222 7 2 7 22 7 2 4 8 0 0 8 0 0 00 00 555 222222222 2 222 0 0 22 0 2 5 0 2222222222222222222222 88 0 22 88 0 0 2 2 2222 8 0 0 0 5 555 88 0 4 6 0 0 0 88 0 00 0 0 8 8 0 0 000 0 000 5 00 0 5 5 55 5 5 00 55 555 000 5 5 555 00 0 55555555 5 000 555555555555555 0 0 0 0 5 0 0 5 5 00 5 5 5 0 5 00 0 5 0 0 555 5 55 5 5 5 55 0 5 00 5 55 5 5 00000 00 5 0
consensus : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT-----C--------T-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AG-TT-AATA--TA-----C--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGA-CATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGATAAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
Reference ( family-1558 ) : TTTTTTTTATA-AAT-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT-----C--------T-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAG-AAAA-G-AAA---A--TG-ATAAACAGTAT--T-----TC-TA-TTT-AG-TT-AATA--TA-----C--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GCT-TTATCAAAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAAGATATTTTAA-CTTCAAATGA-CATAGTAAT-CCTATAAGGTT-AGGTTCTTTCACCTCTGCATC---AAACAGATAAAGA-TGTATTGTTT-AACATATAA-AATTA-TAAAGTTNATA-GCTTTGTTATTAATAGACAGTGGAATTT-C-------A--------NAT---AATATTTGACACATTAAAA-CCAACT-TTTCTGAA-TTTTT-C-TGTATATAT----GAAGACT-CA-AATCA-TTCCACAATGTTTGGG---TTTTTAACA-CATGAAATAAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACAG-TCATTAGTTTTTAA-CAT-TA--TTTTTT-TCAAA--GTAATATCCCAACAGGGANTGATTCTGTTATAAAATTCTAAACTGTAACCATTGAACAGAAGAATCGGTAGTTGTTTTTGGAAACAAAATTTTAAAATACTCCTTGTACTGAAACTAATCACCCACATCCATATGGAGATAATATTCAGGTNTTCCACTTTTTTTTTTGCCCAATGGAAGTTGGGATATTCTCTTTTTCATTCAAAAATTGTAAAAATAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTNCAAAAAATACAGGCATACATGGANTNAATATTTGTTTTAATTTGAATGTCCTATCAAATAGTTTATTACTTCTTAAATATGTTGACANTCGCAGAAATAATGCCATTNNATTTCATTACACATACACCTTGGAGATTGTANTAAGCGTTTGAANCTTTTCTAAGGTTAAGACGTTACAATCAGAGGTCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAAATAAAGACTGGTTTTTCCAGCTATTTTATATATTAAAGAATTATACCACCACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCANGCACAGCAAAAAA
gi|1 : TTTTTTTTATA-AAT-----TCATTTTA-T-TT-TTGT-A-ACA-CCAAG-AGACA-C--T-CA-AACCAT-ACAAAT-----AC-AG-ACA-TAA-AGA--CAATAAAA-----CATAC-AATT-CC----TT-----C--------T-CA----CA------GT--GGTTAC-TT------------TGCT-G-TTGCAGGA-ATT------ATAATTTAAAACAG-AAAA-G-AAA---A--TA-ATAAACAGTAT--T-----TCCTA-TTT-AG-TTTCATA--TA-----C--A-A-TCAGTCAAAAATATTTTT---CAACCTCATCC--G-GCC-TTATCAAAAACT----G-TATATTTTA-GTTTTTGAATTGC-AGCA--TATTT-ATCCACAAGAAATTTTAAACTTCAAATGAACATAGTA-T-CCTATAAGGTTTAGGTTCTTTTACCTCTGCATC---AAAAAAATAAAGA-TATATTGTTTTAACATATAA-AATTAATAAAATTAATAAGCTTTAT-ATTAATAGACAATGGAATTT-C-------A--------CAT---AATATTTGACACATTAAAAACCAACT-TTTCTGAG-TTTTTTC-TGTAT-TATAATGGAAGACT-CA-AATCA-TTCCACAATGTTTGGG---GTTTTAACA-CATTAAGTAAAGACATGGATC-ATT-GTCCTCAACATTATTTTGT-ACAAAATCTAACC-AACAG-TCATTATTTTTTAA-CAT-TAAATTTTTT-TCAAAAAGTAATATCCCAACAAGGAATGATTCTGTTATAAA--TCTAAACTGTAACCATTGAACAGAAGAATCAGTAGTTGTTTTTGAAAACAAAATTTTAAAATACTCCTTGTACTGA---TA-TCACCCACATCCATATGGAGATA---TTCAGATCTTCCACTT--------GCCCAATGGAAGTTGGGATAT---CTTTTTCATTCAAAAATTGTAAAAATAATTT-TAGAA-ATTTTTCATGCAACAAAATAGG-TGCAAAAAATACAGGCATACATGGATTAAATATTTGTTT-AATT-GAATGTCCTATCAAATAGTT-AT-ACTTCTTAAATATGTTGACATTCGCAGAAATAATGCCATTTAATTTCATTACACATACACCTTGGAGATTGTAATAAGCGTT-GAAACTTTTCTAAGGTTAAGACGTTACAATCAGAG-TCAAAAAAAATCTTGAACAATTTTAAATTCCTTTTCATACCCATTCCTTAA-TAAAGACTGGTTTTTCCAGCTATTTTA-ATATTAAAGAATTATACCAC-ACTGGAATATTTTTGAAAATTGGTTTTTTGACATTTGGAAGATTCTGAACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCTTT--CAAAATGCATTTTTTTTCCTTAAG-AAACA-TCTTCTGATCATAAAAACTATCTCCAAAATCATAATAACTTCATAAGAATATCATTTCCATACACAGCAAAAAA
gi|10 : TTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT-----C--------T-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--CAACAGAAAAA-G-AAA---A--TG-ATAAACAGTA---T-----TC-TA-TTT-AG-TT-AATA--TA-----C--A-A-
gi|11 : TTTTTTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTAAAAA----CATAC-AATT-CA----TT-----C--------T-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----G-A--------------AAAA-G-AAA---ACTTG-TTAAAT--TAA--T-----TT-TA-----------AAAA--TG-----C--A-ATTCAGTCCAAat
gi|12 : tttTATT-AAT-----T---TT-A-T-TT-TTGC-A--CA-T--AG-AGCCA-C--TTCA-CA--AT--CAA-C-----TC-AA-ACA-TT---GG--CACTCAAA-----CAT-C-A--T-TC----TT-----C--------TGCAA---CA------GT--GGTT-C-TTA-----------TGCT-G-T-GCAGCA-ATT----T-ATAATT--TAACAGCAAAA-G-AAA---A--TA-ATCAACAGTA---T-----TC-TATTTT-AG-TT-GATA--TA-----TCAA-A-TCAGTC
gi|13 : aTTTTTTTTA----AT-----CCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-CC----TT-----C--------T-CA----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAGAAAAA-G-AAA---A--TG---CAACGGTAT--t
gi|14 : atTTTTTTTCATA-AAT-----TCAAAT-AAT-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACATTAA-AGAGGCACTCAAA-----CATAC-AATT-Ccgtcatatgtttt
gi|15 : ttTTTTTTTCATA-A-T-----TCAATT-A-T-TT-TTGC-A-ACA-C--AG-AGACAAC--T-CA-AAC-AT-ACAA-T-----AC-AG-ACA-TAA-AGA--CACTCAAA-----CATAC-AATT-C
gi|16 : aattAACA-TTTTAAAAAAAGA--TGTGTC-ATT-GTC-TCGACATTATT---------AATTTA--C-AACAG-TCATTTGTTTT-----ATCTA---TTTTT-TCAAA--a
gi|17 : tgAACAGTAT--T------C-TA-TTT-AG-TT-AATA--TAATATAC--A-AATCAGTCAAAAATATTTTT---CAACCTCATCC-AG-GC----ATCAAAAtga
gi|2 : TTTTTTTATA-AAT-----TCATTT-A-T-TTGTTGCCA-ACA-C--AG-A-----------------------------------G-ACA-----------ACTCAAA-----CATACGAACTACC----TT-----C--------T-C-----CA------GT--GGTTAC-TTGC------TACTTGCT-GCT-GC-GCA-ATT----T-ATAATT--AAACAG-AAAAAG-AAA---A--TA-ATAAACAGTTA--T-----TC-TA-TTTTAG-TT-AATA--TA-----C--A-AATTAGTCAAAA-TATTTT----CAACCTCATCCCAG-GCT-TTATCAAAA-CT----GGTATATTTTAAGTTTTTGAATTGCCAGCA--TATTTTCTCCACAAGAAATTT-AA-CTTCAAATGA-CATAGTAAT-CCTATAAGGTT-AGGTTCTT--AC-TCTGCATTTCAAAACA-ATAAAGACTGTATTGTTT-AACATATAA-AAGTA-TAGAATGTATA-GCTTTACTATTAATATACAATGGAATTT-CCACCTTAA--------TATT--AATATTTGACACAT--AAA-CCAACT-CTTCTGAC-GTTTT-C-TGT-TATAT----GGAGACTTCAGAATCAATTCCACAATGTTTGGG---TTTT-AACA-CATGAAGTAAAGACATGGATCCATTTGTC-TCAACATTATCT-GTTACAAAATCTA--C-AACAGGTCATTAGTTTTTAAACAT-TA--TTTTTTGTCAA---GTA-TATCC--ACAGGAATTGATTC-GT-ATAAAATTCTAA-CTGTAACCATTGA-CAGAAGAATTGGTAGTTGTTTT--GAAACAAA--TTTAAAATACT---TGTACTGAAACTAATCACCTAC-TCCATATGGAGATAATATTC--GTATTCCACTTTTTTTTTTGCCCA-TGGAAGTTGGGATATTCTCTTTTTCATT---------------TAATTTGCAGAACATTTTTCATGCAACAAAACAGGGTTCAAAAA-TACAGGCATACATGGAATTAATATTTGTTTTAATTTGAAT--TCTATCAA-TAGTTTATTACTTCTTAAATATGTTGACAATTGCAGAA-TAATGCCATTATATTTCATTACACATACACCTTGGAGATTGTATTAAGCGTTTGAATTTTTTCTAAGGTTAAGACGTTACAATCAGAGGTC---AAAAATCTTGAACAATTTT-AATTCTTTTTCATA--CATTCCTTAAATAAAGACTGG-TTTTCCAGCTATTTTATATATT--AGAATTATACCACCACTGGAATA-TTTTGAAAATTG--TTTTTGACATTTGGAAGATTCTG-ACTTGTCTTCAAATACAAAAACCAAGCATTAAAAACATCCTTGCCAAAATGCATTTTTTTCCCTTAAGAAAACATTCTTC--A--ATAAAA--TATCTCCAAAATCAT-ATAACTTCATAAGAATATCATTTCCAAGCACAGCAAAAAAc
gi|3 : -A-ACA-T--AG-AGAC--C--T-CA-AAC-AT-ACAA-TCAATTACCAA-ACA-TAG-AGA--CACTCAAA-----TATAC-AATT-CC----TTTCTCCC--------C-CG----CA------GT--GGTTAC-TTGC------TACTTGCT-G-T-ACAGCA-ATT----T-ATAATC--AAACAGAAAAA-G-AAA---A--TG-ATAAACAG-AC--T-----TC-TA-TTT-AG-TT-GATA--TA-----C--ATA-TCAGTCAAAAATATTTTT---CAATCTCATCC-AA-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACAGACTATTTTAA-CTTCAAATGA-CATAGTAAT-CCTGTAAGGTT-AGGTTCTTT-A-CTCTGCACC---AAACA----------------TTC---------A-AATTA-TAAAGTTTATA-GCTTTGTTATTAATAGACAGTGGAAATT-C-------ACCTAATATGAT---AATATTTGACACATTAAAA-CCAAC--TCTCTGAA-TTTTT-C-TGTATATAT----GAAGAAT-CA-AATCA-TTCCACAATGTTTGGG---TTTTT--CA-CATGAAATGAAGACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAAAATCTA--C-AACCA-TCATTAG-TTTTAA-CAT-TA--ATTTTT-T
gi|4 : taatacaTATTTCT---CAATCTCATCC-AAAGCTGTTATCATAA-CT----G-TGCATTTTACGTTTTTGAATTGC--GCA--TATTT-CTCCACCA-ATATCTTAA-CTTCAAATGA-CATAGTAAGACCTATAAGGTT-AGGTTCTTTCACTTCTGTATC---AAACAGATAAAAAATGTATTGTT--AACATATAACAATTA-TAAAGTTA--A-GCTTTGTTATTAATAGACAGT-GAATTGAC-------A--------AATATAAATATTCGACACATTTACA-CCAACTCTTTCTGAAGTTTTT-CGTGTATATAT----GAAGA-T-CA-AATCA-TTCCA-AATGTTTGAGTTCTTTTCAATATTTTGAAATAAA-ACATGTATC-ATT-GTC-TCAACATTATTT-GT-ACAACATCTA--CGAACAG-TCATTAGTCTTTAA-CAT-TT--TTTTTT-TCAAA--a
gi|5 : TTATTTTATA-A-T-----TCATTT-A-T-TT-TTGC-A-ACA-C--AG-AGACA-C--T-CA-AAC-AT-ACAA-T-----AC-AA-ACA-TAA-AGA--CATTCAAA-----CATAC-AATT-CC----TT-----C--------T-CA----CAGTCACCGT--GGTTAC-TTGCTACTTGTACTTGCT-G-T-GCAGCA-ATT----T-ATAATT--AAACAGAAAAA-G-AAA---A--TA-ATAAACAGTAT--TCTACATG-TA-TTT-AG-TT-AATA--TA-----CA-A-A-TCAGTC-AAAATATTTTC---CAACCTCATCC-AG-GCT-TTATC-AAAACT----G-TGCATTTTAAGTTTTTGAATTGC-AGCA--TATTT-CTCCACATGATATTTTAA-CTTCAAATGA-CATAGTAAT-CCTATAAGta
gi|6 : tta-A-ACA-T--AGGAGACA-C--T-AA-TAC-AT-GCAA-T-----AC-AG-ACATTAA-AGA--CACTCAAA-----CATACAAATT-CCCAATTC-----C--------C-CACCGCCA------GT--GGT--------------TACTTGCT-G-T-ACAGCACACTTTTGT-ATAAAT--TAACAG-AAAA-G-GAAAACA--TG-ATAAA-AGCATAAT-----TCGTATTTT-AT-TC-AGTA--TA-----C--A-
gi|7 : tttttttttttttattcttgtatgataattattttttttttgcaagcatatcaaatactatcaaagagacacatcataaacatacaaataaTTTTTTTTGGATAAT-----TTATTT-A-T-TT-TTG--------------------------A-AAC-AT-ACAA-T-----AC-AA-TTA-TAG-AGA--CACTCAAA-----CATAC-AATT-CC----TT-----CGCCCGGCCT-CA----CA------GT--GGTTAC-T-------------TGCT-G-T-GCAACA-ATT----T-ATCATT--AAACAG-AAAA-ATAAA---A--AA-AAAAAGAG-AA--T-----TC-CA-TTT-AG-TT-GATA--TA-----CA-A-A-TCTGTCAAAATTGTTTTTTTACAACGTCATCC-AA-ACT-TTAT-GAGAACTGTACG-TGCAATTCAAGTTTTTGAATTGC-AGCATGTATTT-ta
gi|8 : TTTTTCT-TA-A-------TCATTT-A-TATT-TTGC-A-A-A-C--AG-AGA-A-C--TTCA-AAC-ATCACAA-T-----AC-AG-ACA-TAAGAGA--CACAAAAAAAATTTATACCAATTTCC----TT-----C--------T-CA----CAC-----GTTGAGTTAC-TTGC------TACTTGCTTG-A-GCAGCA-ATT----TTATAATG--AAACAG-AAAA-A-GAA---A--TC-ATAAACAGTATAAT-----TC-TA-TTT-AGCTT-AATATTTA-----CA-A-A-TCAGTCAA
gi|9 : aTTTTTTTTATA-AATACTGTTCATTT-A-T-TT-T-GC-ATACAAC--AG-AGACA-TCTT-CAGAAC-AT--CAA-T-----AC-AGGACA-TAA-AGAG-CACTAAAAA----CATAC-AATT-CA----TT-----C--------TCCA----CA------GT--GGTTACTTTGC------TACTT-TT-G-T-GTGTCAGATT----T-G-----------AA-AAAA-G-AAA---ACTTGTTTAAATTATAT--T-----TT-TA-T