lowQualScore : 1 2222222222222222222
lowQualScore : 6 44 6 3 4444444444444444444 66 1 99
lowQualScore : . .. . . ................... .. . ..
lowQualScore : 7 66 7 3 7777777777777777777 77 8 22
consensus : CCACTTTTT-GGG--AA-GA-GGACTT-------GC------T---TAAAT-ATCATTGATTTTTGTG
Reference ( gi|7 ) : CCACTTTTT-GGG--AA-GA-GGACTT-------GC------T---TAAAT-GTCACTGATTTTTGTG
gi|6 : CCACTTTTT-GGG--AAGGG-GGACTT-------AA------T---TAGAT-ATCATTGATTGTTGTG
gi|1 : CCACTTTTT-GGG--AA-GA-GGACTTA------GCTAAAATT---TAACT-ATCATTGATTTt
gi|2 : ggaCCACTTTTTGGGG--AG-GG-GGACTTAAAAATAG-------T---TAAAT-ATAA---ATTTTTGTGat
gi|11 : CACTTTTT-GGG--AA-GAAGGACTT-------GC------T---TAAAT-GTCACTGATTTTTGTta
gi|16 : CACTTTTTTGAG--AG-GA-GGACTT-------GG------T---TAAAT-GT---GGATTTTTGTG
gi|13 : CACTTTT---GG--AATGG-GGACTT-------AG------C---TAGAT-ATCATGGATTTTTGTG
gi|3 : ACTTTTT-GGG--AG-GA-GGACTT-------GC------TTAATAAATAATCATGGATTTTTGT
gi|10 : acaACTTTTT-GAG--AA-GAAGGACCT-------AC------T---TCAAT-ATCGTTGATTTTTATG
gi|8 : ACTTTTT-GGG--AA-G---GACTT-------TA------A---TAGAT-ATTATTGATTTTTGTG
gi|12 : caTTTTT-GGG--AG-GA-GGACTT-------GA------T---TAAAT-A-AATGGATTTCTGTGta
gi|15 : actTTTT-GGG--AA-AAAGGACTT-------GC------T---TCAAT-ATCATTGACTTTTGTGt
gi|9 : TTTT-GGGGGAA-GAAGGACTT-------GC------T---TCAGT-ATAATTGATTTTTGTGt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): CCATTTTTTGTTTGGAATGGCGATGAATTTCTAAATATCATTGATTTCTG
Unaligned ( gi|5 ): GGCACTTTAATGGGAGGGGCTTTCTTAACTATCGTGGATTTTTGTGTAC
Unaligned ( gi|14 ): TTTTGGGATGGGGATTGGGAACTTAGTTAAATATTATGGATTTT
Alignments
lowQualScore : 1 111111111111111
lowQualScore : 2 5 444 33 8888 0 2 888888888888888 444 2 0
lowQualScore : . . ... .. .... . . ............... ... . .
lowQualScore : 7 3 777 77 3333 7 7 999999999999999 777 7 6
consensus : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-ATCATTGATTTTTGTG
Reference ( family-1551 ) : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-ATCATTGATTTTTGTG
gi|1 : CCACTTTT-T-G---GG--AA----GA-GG-ACTTA------GCTAAAATT---TAACT-ATCATTGATTT
gi|10 : ggaACTTTT-T-G---AG--AA----GAAGG-ACCT-------AC------T---TCAAT-ATCGTTGATTTTTATGat
gi|11 : CACTTTT-T-G---GG--AA----GAAGG-ACTT-------GC------T---TAAAT-GTCACTGATTTTTGT
gi|12 : TTTT-T-G---GG--AG----GA-GG-ACTT-------GA------T---TAAAT-A-AATGGATTTCTGTG
gi|13 : actCACTTTT-------GG--AAT---GG-GG-ACTT-------AG------C---TAGAT-ATCATGGATTTTTGTGt
gi|15 : TTT-T-G---GG--AA----AAAGG-ACTT-------GC------T---TCAAT-ATCATTGACTTTTGTG
gi|16 : CACTTTT-TTG---AG--AG----GA-GG-ACTT-------GG------T---TAAAT----GTGGATTTTTGTGt
gi|2 : CCACTTTT-TGG---GG--AG----GG-GG-ACTTAAAAATAG-------T---TAAAT-ATAA---ATTTTTGTG
gi|3 : ACTTTT-T-G---GG--AG----GA-GG-ACTT-------GC------TTAATAAATAATCATGGATTTTTGTta
gi|4 : acaCCATTTTT-T-GTTTGG--AATGGCGA-TG-AATT-------TC------T----AAAT-ATCATTGATTTCTG
gi|5 : CACTTTAAT-G---GG--AG----GG-G---CTT-------TC------T---TAACT-ATCGTGGATTTTTGTG
gi|6 : ggCCACTTTT-T-G---GG--AA----GG-GGGACTT-------AA------T---TAGAT-ATCATTGATTGTTGTGtac
gi|7 : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-GTCACTGATTTTTGTGt
gi|8 : ACTTTT-T-G---GG--AA----G---G-ACTT-------TA------A---TAGAT-ATTATTGATTTTTGTG
gi|9 : caTTT-T-G---GGGGAA----GAAGG-ACTT-------GC------T---TCAGT-ATAATTGATTTTTGTGta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTTGGGATGGGGATTGGGAACTTAGTTAAATATTATGGATTTT
Alignments
lowQualScore : 1 111111111111111
lowQualScore : 2 5 444 33 8888 0 2 888888888888888 444 2 0
lowQualScore : . . ... .. .... . . ............... ... . .
lowQualScore : 7 3 777 77 3333 7 7 999999999999999 777 7 6
consensus : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-ATCATTGATTTTTGTG
Reference ( family-1551 ) : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-ATCATTGATTTTTGTG
gi|1 : CCACTTTT-T-G---GG--AA----GA-GG-ACTTA------GCTAAAATT---TAACT-ATCATTGATTT
gi|10 : ggaACTTTT-T-G---AG--AA----GAAGG-ACCT-------AC------T---TCAAT-ATCGTTGATTTTTATGat
gi|11 : CACTTTT-T-G---GG--AA----GAAGG-ACTT-------GC------T---TAAAT-GTCACTGATTTTTGT
gi|12 : TTTT-T-G---GG--AG----GA-GG-ACTT-------GA------T---TAAAT-A-AATGGATTTCTGTG
gi|13 : actCACTTTT-------GG--AAT---GG-GG-ACTT-------AG------C---TAGAT-ATCATGGATTTTTGTGt
gi|15 : TTT-T-G---GG--AA----AAAGG-ACTT-------GC------T---TCAAT-ATCATTGACTTTTGTG
gi|16 : CACTTTT-TTG---AG--AG----GA-GG-ACTT-------GG------T---TAAAT----GTGGATTTTTGTGt
gi|2 : CCACTTTT-TGG---GG--AG----GG-GG-ACTTAAAAATAG-------T---TAAAT-ATAA---ATTTTTGTG
gi|3 : ACTTTT-T-G---GG--AG----GA-GG-ACTT-------GC------TTAATAAATAATCATGGATTTTTGTta
gi|4 : acaCCATTTTT-T-GTTTGG--AATGGCGA-TG-AATT-------TC------T----AAAT-ATCATTGATTTCTG
gi|5 : CACTTTAAT-G---GG--AG----GG-G---CTT-------TC------T---TAACT-ATCGTGGATTTTTGTG
gi|6 : ggCCACTTTT-T-G---GG--AA----GG-GGGACTT-------AA------T---TAGAT-ATCATTGATTGTTGTGtac
gi|7 : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-GTCACTGATTTTTGTGt
gi|8 : ACTTTT-T-G---GG--AA----G---G-ACTT-------TA------A---TAGAT-ATTATTGATTTTTGTG
gi|9 : caTTT-T-G---GGGGAA----GAAGG-ACTT-------GC------T---TCAGT-ATAATTGATTTTTGTGta
blockSeqs : A T TTT GG TGGC A G AAAAATAG TAA A
blockSeqs : . G . . T A . AC . .
blockSeqs : . . . . . A . GC . .
blockSeqs : . . . . . A . GA . .
blockSeqs : . . . . . . . AG . .
blockSeqs : . . . . . . . GC . .
blockSeqs : . . . . . . . GG . .
blockSeqs : . . . . . . . GC . .
blockSeqs : . . . . . . . TC . .
blockSeqs : . . . . . . . TC . .
blockSeqs : . . . . . . . AA . .
blockSeqs : . . . . . . . GC . .
blockSeqs : . . . . . . . TA . .
blockSeqs : . . . . . . . GC . .
blockSeqCons : GC*************
originalCons : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-ATCATTGATTTTTGTG
finalCons : CCACTTTT-T-G---GG--AA----GA-GG-ACTTGC-------------T---TAAAT-ATCATTGATTTTTGTG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTTGGGATGGGGATTGGGAACTTAGTTAAATATTATGGATTTT
Alignments
lowQualScore : 1 111111111111111
lowQualScore : 2 5 444 33 8888 0 2 888888888888888 444 2 0
lowQualScore : . . ... .. .... . . ............... ... . .
lowQualScore : 7 3 777 77 3333 7 7 999999999999999 777 7 6
consensus : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-ATCATTGATTTTTGTG
Reference ( family-1551 ) : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-ATCATTGATTTTTGTG
gi|1 : CCACTTTT-T-G---GG--AA----GA-GG-ACTTA------GCTAAAATT---TAACT-ATCATTGATTT
gi|10 : ggaACTTTT-T-G---AG--AA----GAAGG-ACCT-------AC------T---TCAAT-ATCGTTGATTTTTATGat
gi|11 : CACTTTT-T-G---GG--AA----GAAGG-ACTT-------GC------T---TAAAT-GTCACTGATTTTTGT
gi|12 : TTTT-T-G---GG--AG----GA-GG-ACTT-------GA------T---TAAAT-A-AATGGATTTCTGTG
gi|13 : actCACTTTT-------GG--AAT---GG-GG-ACTT-------AG------C---TAGAT-ATCATGGATTTTTGTGt
gi|15 : TTT-T-G---GG--AA----AAAGG-ACTT-------GC------T---TCAAT-ATCATTGACTTTTGTG
gi|16 : CACTTTT-TTG---AG--AG----GA-GG-ACTT-------GG------T---TAAAT----GTGGATTTTTGTGt
gi|2 : CCACTTTT-TGG---GG--AG----GG-GG-ACTTAAAAATAG-------T---TAAAT-ATAA---ATTTTTGTG
gi|3 : ACTTTT-T-G---GG--AG----GA-GG-ACTT-------GC------TTAATAAATAATCATGGATTTTTGTta
gi|4 : acaCCATTTTT-T-GTTTGG--AATGGCGA-TG-AATT-------TC------T----AAAT-ATCATTGATTTCTG
gi|5 : CACTTTAAT-G---GG--AG----GG-G---CTT-------TC------T---TAACT-ATCGTGGATTTTTGTG
gi|6 : ggCCACTTTT-T-G---GG--AA----GG-GGGACTT-------AA------T---TAGAT-ATCATTGATTGTTGTGtac
gi|7 : CCACTTTT-T-G---GG--AA----GA-GG-ACTT-------GC------T---TAAAT-GTCACTGATTTTTGTGt
gi|8 : ACTTTT-T-G---GG--AA----G---G-ACTT-------TA------A---TAGAT-ATTATTGATTTTTGTG
gi|9 : caTTT-T-G---GGGGAA----GAAGG-ACTT-------GC------T---TCAGT-ATAATTGATTTTTGTGta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTTTGGGATGGGGATTGGGAACTTAGTTAAATATTATGGATTTT