lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 111 11 555555555 111111 333333333333333333333333333333333333333333333333333333333333333333333333333 1 111 7777777777777777777777777777777 99999999999999999999999999999999999999999999999999999999999999999 2222222 2222222222 111
lowQualScore : 2 6 2 666 0 55 00 3 5 3 5 111111111 66 66 666666 666 8 444444444444444444444444444444444444444444444444444444444444444444444444444 4 4 0 999 0 4 11 33 4 6666666666666666666666666666666 4 44 222 66 55 4 66 99 77 22222222222222222222222222222222222222222222222222222222222222222 3 0000000 99 6 4444444444 2 2 8 555 0
lowQualScore : . . . ... . .. .. . . . . ......... .. .. ...... ... . ........................................................................... . . . ... . . .. .. . ............................... . .. ... .. .. . .. .. .. ................................................................. . ....... .. . .......... . . . ... .
lowQualScore : 5 7 1 444 1 44 88 6 0 4 0 444444444 99 99 444444 000 7 000000000000000000000000000000000000000000000000000000000000000000000000000 4 2 8 444 1 4 99 66 0 0000000000000000000000000000000 0 33 999 11 55 0 11 00 99 33333333333333333333333333333333333333333333333333333333333333333 2 5555555 22 7 4444444444 8 8 0 666 7
consensus : TTCNAA-ATG-TCA-A-TTCAGTCTTGCT-GCCATT-GCTG-TT-TTA-AA--CCATTT--A--GCTGGC------TGATNTACATCTG--TAGAAC-----AGA-------------CCAA-ACAACCTT-CAGAAAGCGGACTNAAANAAAAA------CCT-GTGTCCGCATAAACGTA-CATGA-TCTAGTATCCATTT-CT--------CCTT-------------------TTTATCAAGT-TTGTGATGGATTGCGCA--TTCA-GAACTGCNAGTAA--AA-----A---------------ATA------C---TA---GTG-------------T-AAAGC---CATATTTC--ANG--TAA--ATGCCAGAA-TCTAC-AC----GCTTAGCGCTA-TTCG-GTACTTTCAGTACTTTTGATT
Reference ( gi|5 ) : TTCCAA-ATGGTCA-G-TTTAGTCTTGCT-GCCATT-GTTG-TT-TTAAAA--CCATTT--A--GCTGGC------TGATTTATATCTG--TAGAAC-----AGA-----------G-CCAACACAACCTTGTATAAAGCAGACTAAAAGAAAAA------TCT-GTGCCTGCAAAAACGTT-TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTTGTGCA--TTCA-GAACTGCAAACAA--AA-----A---------------ATA------C---TA---GTG-------------T-AAAGA---CATATTTC--AAG--TAA--ATGCCAGAA-TCAAC-AT----GCCTAGTGCCA-TTAA-GTACTTTCAGCACTTTTGATT
gi|8 : TTCCAATATGGTCA-G-TTT-GTCTTGCT--CCATTTGTT--TT-TTAAAA--C-ATTT--A--GCTGGC------TGATCTATATCTGATTAGAAC-----AGA-----------G-C--ACACAACCTTGTATAAAGCAGACTAAAAGAAAAA------TCTTGTGCCTGCAAAAACGTT-TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGG-TG-GCA--TTC--GAACTGCAAACAA--AA-----A---------------ATA------C---TA---GTG-------------T-AAA-C---CATATTTC--AGT--TAA--ATGCCAGAA-TC
gi|14 : agggTCAAA-ATG-TCA-A-TTCAGTCTTGCA-GCCATT-GCTG-TT-----AA--CCATTT--G--GTTAG
gi|1 : aggagaccagtttaacatgtctcacagggataaaAA-ATG-TCT-T-TTCAATCCTGCA-GCCATT-GGCG-TT-----AA--CGATTT--A--GTTGGC------TGATATACATCTG--TAG----------------------T-CC----CAACCTTACAGAGACCAGACTAAAAAAAAA--------CT-TTGTCGACATAAACGTT-CATGA-TTTAGTATCCATTT-CT--------AAGG-------------------TTTAACAAGT-TTGTGATGAATTGCACG--TTCA-TAAGTTCTAGTAA--AA-----GCACTAGTATTACACCATG------C---TAATGGTG-------------TCAAAGAAACCGTATTTC--ATG--TAA--ATGTCAGAAGTC-AC-AC----ACTTAGCGCTT-TCCA-GAATTTTCAGTACTCTTGATTtgtagattcaagcac
gi|4 : tgtgtatcatctcaaaacacgcctacctgtgtttatcatctcaaaacacgcctacctgaatactatcttcccgtgaaaaatcagatccgggaccagtttagccaaatgtcttacaagaggggttAA-ATG-TCA-A-GTCAGTCTC-CTAGCCATT-GCTG-TTATTA-----CCATTT--A--GCTGGT------TGATTTAC-TC--------AC-----AGA-----------AATCAA-ACA-------------CAGGC------AAAAA------CCT-GTGTCTGCATAAATGTA--ATGA-TCTAGTATCCATTT-CTTTTCTGACTCTTTTTTTTAATTTTTTG----TTTATCAAGA-GTGTAATGGATTGCACA--TTCA-GAAC
gi|7 : taagttgcagtgcttttgtcacagttggatttcatttttgcatttgtgtataatgatcatcacctatttgtactgactttgtaaacaagtctacctgtctgctgtttcccgggtgagatatcaaacaggagattagtcttagtcttacttgatgccttactgggttAA-ATG-TCA-AACTCAGTCTC-CTAGCCATT-GCTG-TTATTA-----CCATTT--A--GCTGGT------TGATTTAC-TC--------AC-----AGA---------------AAT-CAAC-------AAGGCAAAC------------------CT-GTGTCTGCATAAATGTA-CATGATTCTAGTATCCATTT-CTTTCTGAC-TCTTTTTTTTATAATTTCTTTTTTTTATCAAGTAGTGTAATGGATTGCACA--TGCAGGAACTGCgttgcttgataaa
gi|6 : tgtaaacaagtctacctgttctgctgttgccggtgagatatcaaaaacaggagattagtcttagtctaacttgaagtgccattaatgggtgAA-ATGTTCATA-TTTGGTTTTGCA-GCATTT-GCAG-TT-----AG--CCTTTT--ATAAATGGC------CGAAA-ATATCCT--TAGAGC-----AGA-------------CCAG----ACGTC-TACAAA----ACTCAAATTCCGA------TC--GAGTTCACAATAACTTA-TATGA-TA-AGTGTTCATTT-CTATT-----TCTT-------------------CTTAGAAAGT-TTGCGATGGGTTCCACA--TTTA-GAACTta
gi|2 : ggaccgtcctagcctgatgacttggggttGGGCA-A-TCTAGCCT-GAT-GTC-TT-GCGGGTT-TTAAAATGCCATTTCAA--TTTTGCACCCTTTG--TCATTTCAG--TAGAA---------------------------GCAACCTTACAGAATGTGGACTCAAGCCCGAT------TGC-GTGTCAGCATAAA-GTTGTATAA-TCTAGTATCTGTTT-CC--------C--T-------------------TCTATACAGT-TTGTGATGGATAGTAGA--TTCA-GAACTG-ATAGAA--AA-----T---------------ATA------C----A---GTGTATGT--------T-AAAG--------TTGCGTAAGCATGACCATGTCAGAA-TTTAC-AA----GCTTTGTCCTA-CTCG-GTACccttgtgaagatactacaaatttagcattataccttgtaaatgtcactaaagttattaccatatttcatgtaaat
gi|9 : aagcaccaaacatagtggcagcgcttttttgtctccaactggctttctactttcgattttgccacctattagcttagtacttgtttggtttatgcccaatgggatactatataaGTCATACT-GCCTTT-GTTG-GT-----GA--CCATCT--A--GCTG-C------TGAGATATACCTG--CAGAACCCACCAGACCGGGCACCAGA-CCAATACAAC-----AGAAAGCGAACACCAAGAAAAC------CCC-GTGTCTGCACAAACGT--------------ACC--TTT-CT--------CCTT-------------------TTCATCGAGT-TTGTGATGAAT--TGCA--T-----ATCTGCTAGT-A--AA-----A---------------TTG------C---TA---GTG-------------T-c
gi|3 : tctcctatcctcctatgagatatcaaacaggggacagatctagtctggtAAAACAAAAAACCTCACCT-TTGTCTGTGCAAACTTA-CATGA-TCTAGTATACATTTTCT--------CCCT-------------------TTTATCAAGT-TTGTGATAAATTGCACT--TTCA-GAACTGCTAGTAAATAA-----A---------------ATA------C---TG---GTG-------------T-AAATC---CATAGTT----GG--TAA--ATACCAGAA-TCCACAATCCAAGCTTGGCGCTA-TTTG-GTACT
gi|13 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattaacgtccatttatcctgcagccactaccattaactatgttgctagttgagagactatccaaaaaT-GTGTCCGAGTAAACGTA-TAC-A-TGGCGTGTCAATTT-CT--------CCTT-------------------TCTATCAAGT-TTGTGATGAG--GTGCACTTTCA-GA----TAAACAA--GT-----G---------------TTA------CACTTT---GT--------------T-AATGC---CAT-TTTC--CTG--TGC--ATGCCAGAA-Tattgtaaataccagaaatccacaatccgcttggcgctatttggtactattgtattaa
gi|12 : cctT-CT--------CCTT-------------------TCTATCAA-T-ATGTGATTGATTGCACA--TCAA-GAACTGTTAA--A--AATTGCCA---------------GTATTGCATC---TT---GTGACTGTTAGCGACTT-AAATC---CAAATTTC--ATG--CAA--CTTTCAAAA-TTTGC-AC----CCTTAACGCTA-TTCA-GTACTTCCAGTACTTT
gi|16 : gAC-AT----GCCTAGTGCCAATTAATGTACTTTCAGCACTTTTGATga
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TATAAGAAACAAATATAATTTTTAAGTGTAGTGCTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTCAGATCACTAGCCACCAATGAGTTGGCATTTTGACACAAGCCGTGTCTGCTATCTCTCTATGAAATATCAGATTAGGGGACAGCCTAACCTGATGTCTTAT
Unaligned ( gi|11 ): AGCTGTAGTGCTTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTTCAGATCACTGCCACCAATGAGTTGGCATTTTGACACAAGCCTGTCTGCTATCTCTCTATGAAATATCAGTTAGGGGACCAGCCTAACCTGATGTCTTATGGGATAGAATGTCAGTTC
Unaligned ( gi|15 ): AAGTTAGTAATAAAAATACTAGTACATCTTGTTCAGTGTATCCAAAGTAACGCCATATTTCATGTGAATGCAGAAATTTGCACACTTGCG
Alignments
lowQualScore : 1 11 4444444 77777777777777777777777777777777777777777777777777777777777777777 6666666666666666666666666666666 44444444444444444444444444444444444444444444444444444444444444444444 11111111 2222222
lowQualScore : 1 5 0 5 888 2 11 1111111 66 111 88 77777777777777777777777777777777777777777777777777777777777777777 2 4 4 1 7777 4 22 0 3 5555555555555555555555555555555 3 3 3 55 777777 55 4 77777777777777777777777777777777777777777777777777777777777777777777 333 44444444 4 1 1111111 4 0 77
lowQualScore : . . . . ... . .. ....... .. ... .. ................................................................. . . . . .... . .. . . ............................... . . . .. ...... .. . .................................................................... ... ........ . . ....... . . ..
lowQualScore : 0 0 0 0 000 9 44 8888888 11 444 22 55555555555555555555555555555555555555555555555555555555555555555 0 0 6 8 2222 0 33 4 6 6666666666666666666666666666666 6 1 6 00 000000 55 0 99999999999999999999999999999999999999999999999999999999999999999999 000 55555555 4 1 5555555 1 4 99
consensus : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCN-GCCATTGCCGTT-TTAAA-CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGACT-AAAGAAAAACCT-GTGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A---------------ATA------CTA------GTG-------------T-AA----AG---CCATATTTCATGTAA--------ATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
Reference ( family-1483 ) : TTCNAA-ATG-T-CA-A-TTCAGTCTTGCT-GCCATTGCTGTT-TTAAA-CCATTTA--GCTGGCTGATNTAC-ATCTG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGACTNAAANAAAAACCT-GTGTCCGCATAAACGTA--CATGA-TCTAGTATCCATTT-CT--------CCTT-------------------TTTATCAAGT-TTGTGATGGATTGCGCATTCA-GAAC--TGCNAG-TAA--A-A-----A---------------ATA------CTA------GTG-------------T-AA----AG---CCATATTTCANGTAA--------ATGCCAGAA-TCTACA---C---GCTTAGCGCTATTCG--GTACTTTCAGTACTTTTGATT
gi|1 : AA-ATG-T-CT-T-TTCAATCCTGCA-GCCATTGGCGTT----AA-CGATTTA--GTTGGCTGATATAC-ATCTG--TAGT-----------------------CC----CAACCTTACAGAGACCAGACTAAAAAAAAA--CT-TTGTCGACATAAACGTT--CATGA-TTTAGTATCCATTT-CT--------AAGG-------------------TTTAACAAGT-TTGTGATGAATTGCACGTTCA-TAAG--TTCTAG-TAA--A-A-----GCACTAGTATTACACCATG------CTAATG---GTG-------------TCAA----AGAAACCGTATTTCATGTAA--------ATGTCAGAA-GTCACA---C---ACTTAGCGCTTTCCA--GAATTTTCAGTACTCTTGATT
gi|12 : tgtgtatcatctcaaaacacgcctacctgtgtttatcatctcaaaacacgcctacctgaatactatcttcccgtgaaaaatcagatccgggaccagtttagccaaatgtcttacaagaggggttT-CT--------CCTT-------------------TCTATCAA-T-ATGTGATTGATTGCACATCAA-GAAC--TGTTA---AA--A-ATTGCCA---------------GTATTGCATCTT------GTGACTGTTAGCGACTT-AA----AT---CCAAATTTCATGCAA--------CTTTCAAAA-TTTGCA---C---CCTTAACGCTATTCA--GTACTTCCAGTACTTT
gi|13 : gCTT-GTGTCCGAGTAAACGTATACATGG-C---GTGTCAATTT-CT--------CCTT-------------------TCTATCAAGT-TTGTGATGAGGTGCACTTTCA-GA-----------TAA--ACA-----A---------------GTG------TTACACTTTGT--------------T-AA----TG---CCAT-TTTCCTGTGC--------ATGCCAGAA-Tga
gi|14 : cTCAAA-ATG-T-CA-A-TTCAGTCTTGCA-GCCATTGCTGTT----AA-CCATTTG--GTTAG
gi|15 : aggagaccagtttaacatgtctcacagggataaaG-------------T-AA----CG---CCATATTTCATGTGA--------ATGCAGAAA-TTTGCA---C---ACTT-GCGtgtagattcaagcac
gi|16 : aagttagtaataaaaatactagtacatcttgttcagtgtatccaaaACA---T---GCCTAGTGCCAATTAATGTACTTTCAGCACTTTTGAT
gi|2 : AA-GCAACCTTACAGAATGTGGACTCAAGCCCGATTGC-GTGTCAGCATAAAGTTG--TATAA-TCTAGTATCTGTTT-CC--------C--T-------------------TCTATACAGT-TTGTGATGGATAGTAGATTCA-GAAC--TGATAG--AA--A-A-----T---------------ATA------C-A------GTG-------------T--A----TG---TTAAAGTT-GCGTAAGCATGACCATGTCAGAA-TTTACA---A---GCTTTGTCCTACTCG--GTAC
gi|3 : aagcaccaaacatagtggcagcgcttttttgtctccaactggctttctactttcgattttgccacctattagcttagtacttgtttggtttatgcccaatgggatactatataagggcaatctagcctgatgtcttgcgggttttaaaatgccatttcaattttgcaccctttgtcatttcagtagA-ACG-T-CC-A-TTTA-TCCTGCA-GCCACTACCATT----AA-CTATGTT--GCTAGTTGAGAGACTATCC----AAAAA-----------------AAA-ACAA-AAAACCTC-----------------------ACCT-TTGTCTGTGCAAACTTA--CATGA-TCTAGTATACATTTTCT--------CCCT-------------------TTTATCAAGT-TTGTGATAAATTGCACTTTCA-GAAC--TGCTAG-TAAATA-A-----A---------------ATA------CTG------GTG-------------T-AA----AT---CCATAGTT--GGTAA--------ATACCAGAA-TCCACAAT-CCAAGCTTGGCGCTATTTG--GTACTc
gi|3 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattGTAA--------ATACCAGAAATCCACAATCC---GCTTGGCGCTATTTG--GTACTattgtaaataccagaaatccacaatccgcttggcgctatttggtactattgtattaa
gi|4 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattaacgtccatttatcctgcagccactaccattaactatgttgctagttgagagactatccaaaaaaaaacaaaaaacctcacctttgtctgtgcaaacttacatgatctagtatacattttctcccttttatcaagtttgtgataaattgcactttcagaactgctagtaaataaaatactggtgtaaatccatagttggtaaataccagaatccacaatccaagcttggcgctatttggtactattAA-ATG-T-CA-A-GTCAGTCTC-CTAGCCATTGCTGTTATTA---CCATTTA--GCTGGTTGATTTAC--TC-A--CAGAA--------------------A-TCAA-ACA------CAG---GC----------AAAAACCT-GTGTCTGCATAAATGTA---ATGA-TCTAGTATCCATTT-CTTTTCTGACTCTTTTTTTTAATTTTTTG----TTTATCAAGA-GTGTAATGGATTGCACATTCA-GAACGTTGCTTGATAA--A-attgtattaa
gi|5 : taagttgcagtgcttttgtcacagttggatttcatttttgcatttgtgtataatgatcatcacctatttgtactgactttgtaaacaagtctacctgtctgctgtttcccgggtgagatatcaaacaggagattagtcttagtcttacttgatgccttactgggttTTCCAA-ATGGT-CA-G-TTTAGTCTTGCT-GCCATTGTTGTT-TTAAAACCATTTA--GCTGGCTGATTTAT-ATCTG--TAGAAC-----------------AGAGCCAACACAACCTTGTATAAAGCAGACTAAAAGAAAAATCT-GTGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTTGTGCATTCA-GAAC--TGCAAA-CAA--A-A-----A---------------ATA------CTA------GTG-------------T-AA----AG---ACATATTTCAAGTAA--------ATGCCAGAA-TCAACA---T---GCCTAGTGCCATTAA--GTACTTTCAGCACTTTTGATT
gi|6 : AA-ATG-TTCATA-TTTGGTTTTGCA-GCATTTGCAGTT----AG-CCTTTTATAAATGGCCGAAA-AT-ATCCT--TAGAGC-----------------AGA-CCAG-ACG---TC-TACAAA----ACTCAAATTCCGATC--GAGTTCACAATAACTTA--TATGA-TA-AGTGTTCATTT-CTATT-----TCTT-------------------CTTAGAAAGT-TTGCGATGGGTTCCACATTTA-GAAC--TCCTTG-T-G--A-A-----G---------------ATA------CTA----------------------C-AAATTTAG---CATTATACCTTGTAA--------ATGTCA
gi|7 : ggaccgtcctagcctgatgacttggggttAA-ATG-T-CA-AACTCAGTCTC-CTAGCCATTGCTGTTATTA---CCATTTA--GCTGGTTGATTTAC--TC--------AC-----------------AGA---AA-TCAAC-------AAGGC------------AAACCT-GTGTCTGCATAAATGTA--CATGATTCTAGTATCCATTT-CTTTCTGAC-TCTTTTTTTTATAATTTCTTTTTTTTATCAAGTAGTGTAATGGATTGCACATGCAGGAAC--TGCTActaaagttattaccatatttcatgtaaat
gi|8 : tgtaaacaagtctacctgttctgctgttgccggtgagatatcaaaaacaggagattagtcttagtctaacttgaagtgccattaatgggtgTTCCAATATGGT-CA-G-TTT-GTCTTGCT--CCATTTGTTTT-TTAAA-ACATTTA--GCTGGCTGATCTAT-ATCTGATTAGAAC-----------------AGA-GCAC-ACAACCTTGTATAAAGCAGACTAAAAGAAAAATCTTGTGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGG-TG-GCATTC--GAAC--TGCAAA-CAA--A-A-----A---------------ATA------CTA------GTG-------------T-AA----A----CCATATTTCAGTTAA--------ATGCCAGAA-TC
gi|9 : agggGTCATACT-GCCTTTGTTGGT----GA-CCATCTA--GCTG-CTGAGATAT-ACCTG--CAGAACCCACCAGACCGGGCACCAGA-CCAATACAAC-----AGAAAGCGAACACCAAGAAAACCCC-GTGTCTGCACAAACGTA--C--------------C-TTT-CT--------CCTT-------------------TTCATCGAGT-TTGTGATGAATTGCATAT-------C--TGCTAG-T-A--A-A-----A---------------TTG------CTA------GTG-------------T-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATAAGAAACAAATATAATTTTTAAGTGTAGTGCTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTCAGATCACTAGCCACCAATGAGTTGGCATTTTGACACAAGCCGTGTCTGCTATCTCTCTATGAAATATCAGATTAGGGGACAGCCTAACCTGATGTCTTAT
Unaligned ( gi|11 ): AGCTGTAGTGCTTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTTCAGATCACTGCCACCAATGAGTTGGCATTTTGACACAAGCCTGTCTGCTATCTCTCTATGAAATATCAGTTAGGGGACCAGCCTAACCTGATGTCTTATGGGATAGAATGTCAGTTC
Alignments
lowQualScore : 1 4444444 888888888888888888888888888888888888888888888888888888888888888888 11111111 6666666666666666666666666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222
lowQualScore : 5 0 5 666 1 66 1 3333333 4 66 111 88 444444444444444444444444444444444444444444444444444444444444444444 44444444 777 4 1 7777 4 22 4 3 5555555555555555555555555555555 3 1 3 55 666 55 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 11 1111111 4 0 77
lowQualScore : . . . ... . .. . ....... . .. ... .. .................................................................. ........ ... . . .... . .. . . ............................... . . . .. ... .. . ................................................................................. . .. ....... . . ..
lowQualScore : 0 0 0 111 0 11 7 4444444 4 11 444 22 333333333333333333333333333333333333333333333333333333333333333333 66666666 000 6 0 2222 0 33 6 6 6666666666666666666666666666666 6 6 6 00 000 55 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 99 5555555 1 4 99
consensus : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTT-TT-A--A-CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC-T-AA-GAAAAACCT-G------T---GTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
Reference ( family-1483 ) : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCNGCCAT--TGCCGTT-TTAA--A-CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC-TAAA-GAAAAACCT-G------T---GTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
gi|1 : AA-ATG-T-CT-T-TTCAATCCTGCAGCCAT--TGGCGTT----A--A-CGATTTA--GTTGGCTGATATAC-ATCTG--TAGT-----------------------CC----CAACCTTACAGAGACCAGAC-TAAA-AAAAAACTT--------T---GTCGACATAAACGTT--CATGA-TTTAGTATCCATTT-CT--------AAGG-------------------TTTAACAAGT-TTGTGATGAATTGCACGTTCA-TAAG--TTCTAG-TAA--A-A-----GCACTAGTATTACACC---ATG------CT-----AATG---GTG-------------TC---AAAGAAA---C--CGTATTTCATGTAAATGTCAGAA-GTCACA---C---ACTTAGCGCTTTCCA--GAATTTTCAGTACTCTTGATT
gi|12 : tgtgtatcatctcaaaacacgcctacctgtgtttatcatctcaaaacacgcctacctgaatactatcttcccgtgaaaaatcagatccgggaccagtttagccaaatgtcttacaagaggggttT-CT--------CCTT-------------------TCTATCAA-T-ATGTGATTGATTGCACATCAA-GAAC--TGTTA---AA--A-ATTGCCA------------------GTATTGCATCT-----T------GTGACTGTTAGCGACTT----AAAT------C--CAAATTTCATGCAACTTTCAAAA-TTTGCA---C---CCTTAACGCTATTCA--GTACTTCCAGTACTTT
gi|13 : gCTT-G------T---GTCCGAGTAAACGTATACATGG-C---GTGTCAATTT-CT--------CCTT-------------------TCTATCAAGT-TTGTGATGAGGTGCACTTTCA-GA-----------TAA--ACA-----A------------------GTG------TT-----ACACTTTGT--------------T----AATG------C--CAT-TTTCCTGTGCATGCCAGAA-Tga
gi|14 : cTCAAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCTGTT----A--A-CCATTTG--GTTAG
gi|15 : aggagaccagtttaacatgtctcacagggataaaG-------------T----AACG------C--CATATTTCATGTGAATGCAGAAA-TTTGCA---C---ACTT-GCGtgtagattcaagcac
gi|16 : aagttagtaataaaaatactagtacatcttgttcagtgtatccaaaCA---T---GCCTAGTGCCAATTAATGTACTTTCAGCACTTTTGAT
gi|2 : aAA-GCAACCTTACAGAATGTGGAC-TCAA-G-----CCC-GATTGCGT---GTCAGCATAAAGTTG--TATAA-TCTAGTATCTGTTT-CC--------C--T-------------------TCTATACAGT-TTGTGATGGATAGTAGATTCA-GAAC--TGATAG--AA--A-A-----T------------------ATA------C------A------GTGTATGT--------T----AAAG------TTGCGTA-AGCATGACCATGTCAGAA-TTTACA---A---GCTTTGTCCTACTCG--GTAC
gi|3 : aagcaccaaacatagtggcagcgcttttttgtctccaactggctttctactttcgattttgccacctattagcttagtacttgtttggtttatgcccaatgggatactatataagggcaatctagcctgatgtcttgcgggttttaaaatgccatttcaattttgcaccctttgtcatttcagtagA-ACG-T-CC-A-TTTA-TCCTGCAGCCAC--TACCATT----A--A-CTATGTT--GCTAGTTGAGAGACTATCC----AAAAA-----------------AAA-ACAA-AAAACCTC------------------------ACCT-T------T---GTCTGTGCAAACTTA--CATGA-TCTAGTATACATTTTCT--------CCCT-------------------TTTATCAAGT-TTGTGATAAATTGCACTTTCA-GAAC--TGCTAG-TAAATA-A-----A------------------ATA------CT-----G------GTG-------------T----AAAT------C--CATAGTT--GGTAAATACCAGAA-TCCACAAT-CCAAGCTTGGCGCTATTTG--GTACTc
gi|3 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattTGTAAATACCAGAAATCCACAATCC---GCTTGGCGCTATTTG--GTACTattgtaaataccagaaatccacaatccgcttggcgctatttggtactattgtattaa
gi|4 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattaacgtccatttatcctgcagccactaccattaactatgttgctagttgagagactatccaaaaaaaaacaaaaaacctcacctttgtctgtgcaaacttacatgatctagtatacattttctcccttttatcaagtttgtgataaattgcactttcagaactgctagtaaataaaatactggtgtaaatccatagttggtaaataccagaatccacaatccaagcttggcgctatttggtactatAA-ATG-T-CA-A-GTCAGTCTCCTAGCCAT--TGCTGTTATT----A-CCATTTA--GCTGGTTGATTTAC---TCA--CAGAA--------------------A-TCAA-ACA------CAG---GC-----------AAAAACCT-G------T---GTCTGCATAAATGTA---ATGA-TCTAGTATCCATTT-CTTTTCTGACTCTTTTTTTTAATTTTTTG----TTTATCAAGA-GTGTAATGGATTGCACATTCA-GAACGTTGCTTGATAA--A-attgtattaa
gi|5 : taagttgcagtgcttttgtcacagttggatttcatttttgcatttgtgtataatgatcatcacctatttgtactgactttgtaaacaagtctacctgtctgctgtttcccgggtgagatatcaaacaggagattagtcttagtcttacttgatgccttactgggttTTCCAA-ATGGT-CA-G-TTTAGTCTTGCTGCCAT--TGTTGTT-TTAA--AACCATTTA--GCTGGCTGATTTAT-ATCTG--TAGAAC-----------------AGAGCCAACACAACCTTGTATAAAGCAGAC-TAAAAGAAAAATCT-G------T---GCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTTGTGCATTCA-GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------A--CATATTTCAAGTAAATGCCAGAA-TCAACA---T---GCCTAGTGCCATTAA--GTACTTTCAGCACTTTTGATT
gi|6 : AA-ATG-TTCATA-TTTGGTTTTGCAGCATT--TGCAGTT----A--G-CCTTTTATAAATGGCCGAAA-AT-ATCCT--TAGAGC-----------------AGA-CCAG-ACG-TCTA-CAAAACTCAAAT-T----------CCG-A------TCGAGTTCACAATAACTTA--TATGA-TA-AGTGTTCATTT-CTATT-----TCTT-------------------CTTAGAAAGT-TTGCGATGGGTTCCACATTTA-GAAC--TCCTTG-TGA--A-G-----ATACTACAAATTTAGCATTATA------CCTTGTAA------ATG-------------TCACTAAAGTTATTAC--CATATTTCATGTAAAT
gi|7 : ggaccgtcctagcctgatgacttggggttAA-ATG-T-CA-AACTCAGTCTCCTAGCCAT--TGCTGTTATTA-----CCATTTA--GCTGGTTGATTTAC--TC--------AC-----------------AGA---AA-TCAAC-------AAGGC-------------AAACCT-G------T---GTCTGCATAAATGTA--CATGATTCTAGTATCCATTT-CTTTCTGAC-TCTTTTTTTTATAATTTCTTTTTTTTATCAAGTAGTGTAATGGATTGCACATGCAGGAAC--TGCTA
gi|8 : tgtaaacaagtctacctgttctgctgttgccggtgagatatcaaaaacaggagattagtcttagtctaacttgaagtgccattaatgggtgTTCCAATATGGT-CA-G-TTT-GTCTTGCT-CCAT--TTGTTTT-TTAA--A-ACATTTA--GCTGGCTGATCTAT-ATCTGATTAGAAC-----------------AGA-GCAC-ACAACCTTGTATAAAGCAGAC-TAAAAGAAAAATCTTG------T---GCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTGG--CATTC--GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAA-------C--CATATTTCAGTTAAATGCCAGAA-TC
gi|9 : aggg-A-TCTAGTCTGG-TGTCATACTGCCTTTGTTGGTGA-CCATCTA--GCTG-CTGAGATAT-ACCTG--CAGAACCCACCAGACCGGGCACCAGA-CCAATACAAC-----AGAAAGCGAACACCAA-GAAAACCCC-G------T---GTCTGCACAAACGTA--C--------------C-TTT-CT--------CCTT-------------------TTCATCGAGT-TTGTGATGAATTGCATAT-------C--TGCTAG-T-A--A-A-----A------------------TTG------CT-----A------GTG-------------T----
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATAAGAAACAAATATAATTTTTAAGTGTAGTGCTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTCAGATCACTAGCCACCAATGAGTTGGCATTTTGACACAAGCCGTGTCTGCTATCTCTCTATGAAATATCAGATTAGGGGACAGCCTAACCTGATGTCTTAT
Unaligned ( gi|11 ): AGCTGTAGTGCTTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTTCAGATCACTGCCACCAATGAGTTGGCATTTTGACACAAGCCTGTCTGCTATCTCTCTATGAAATATCAGTTAGGGGACCAGCCTAACCTGATGTCTTATGGGATAGAATGTCAGTTC
Alignments
lowQualScore : 1 3333333333 88888888888888888888888888888888888888888888888888888888888888888888 111111 6666666666666666666666666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222
lowQualScore : 5 0 5 666 4 66 1 1111111111 66 66 111 88 11111111111111111111111111111111111111111111111111111111111111111111 111111 4 4 1 7777 4 22 4 3 0000000000000000000000000000000 3 1 3 55 666 55 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 11 1111111 4 0 77
lowQualScore : . . . ... . .. . .......... .. .. ... .. .................................................................... ...... . . . .... . .. . . ............................... . . . .. ... .. . ................................................................................. . .. ....... . . ..
lowQualScore : 0 0 0 111 8 11 7 0000000000 11 11 444 22 33333333333333333333333333333333333333333333333333333333333333333333 555555 0 6 0 2222 0 33 6 6 3333333333333333333333333333333 6 6 6 00 000 55 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 99 5555555 1 4 99
consensus : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTT-----T---AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACC------C-GTGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
Reference ( family-1483 ) : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTT-----T---AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACC------T-GTGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
gi|1 : AA-ATG-T-CT-T-TTCAATCCTGCAGCCAT--TGGCGTT----------AA--CGATTTA--GTTGGCTGATATAC-ATCTG--TAGT-----------------------CC----CAACCTTACAGAGACCAGAC--T-AA--AAAAAAAC------T-TTGTCGACATAAACGTT--CATGA-TTTAGTATCCATTT-CT--------AAGG-------------------TTTAACAAGT-TTGTGATGAATTGCACGTTCA-TAAG--TTCTAG-TAA--A-A-----GCACTAGTATTACACC---ATG------CT-----AATG---GTG-------------TC---AAAGAAA---C--CGTATTTCATGTAAATGTCAGAA-GTCACA---C---ACTTAGCGCTTTCCA--GAATTTTCAGTACTCTTGATT
gi|12 : tgtgtatcatctcaaaacacgcctacctgtgtttatcatctcaaaacacgcctacctgaatactatcttcccgtgaaaaatcagatccgggaccagtttagccaaatgtcttacaagaggggttT-CT--------CCTT-------------------TCTATCAA-T-ATGTGATTGATTGCACATCAA-GAAC--TGTTA---AA--A-ATTGCCA------------------GTATTGCATCT-----T------GTGACTGTTAGCGACTT----AAAT------C--CAAATTTCATGCAACTTTCAAAA-TTTGCA---C---CCTTAACGCTATTCA--GTACTTCCAGTACTTT
gi|13 : gCT------T-GTGTCCGAGTAAACGTATACATGG-C---GTGTCAATTT-CT--------CCTT-------------------TCTATCAAGT-TTGTGATGAGGTGCACTTTCA-GA-----------TAA--ACA-----A------------------GTG------TT-----ACACTTTGT--------------T----AATG------C--CAT-TTTCCTGTGCATGCCAGAA-Tga
gi|14 : cTCAAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCTG--T-----T---AA--CCATTTG--GTTAG
gi|15 : aggagaccagtttaacatgtctcacagggataaaG-------------T----AACG------C--CATATTTCATGTGAATGCAGAAA-TTTGCA---C---ACTT-GCGtgtagattcaagcac
gi|16 : aagttagtaataaaaatactagtacatcttgttcagtgtatccaaaCA---T---GCCTAGTGCCAATTAATGTACTTTCAGCACTTTTGAT
gi|2 : aAA-GCAACCTTACAGAATGTGGAC--TCAA--G-----CCCGATTGC-GTGTCAGCATAAAGTTG--TATAA-TCTAGTATCTGTT---T--------CCCT-------------------TCTATACAGT-TTGTGATGGATAGTAGATTCA-GAAC--TGATAG--AA--A-A-----T------------------ATA------C------A------GTGTATGT--------T----AAAG------TTGCGTA-AGCATGACCATGTCAGAA-TTTACA---A---GCTTTGTCCTACTCG--GTAC
gi|3 : aagcaccaaacatagtggcagcgcttttttgtctccaactggctttctactttcgattttgccacctattagcttagtacttgtttggtttatgcccaatgggatactatataagggcaatctagcctgatgtcttgcgggttttaaaatgccatttcaattttgcaccctttgtcatttcagtagA-ACG-T-CC-A-TTTA-TCCTGCAGCCAC--TACCATT----------AA--CTATGTT--GCTAGTTGAGAGACTATCC----AAAAA-----------------AAA-ACAA-AAAACCTC--------------------------ACC------T-TTGTCTGTGCAAACTTA--CATGA-TCTAGTATACATTTTCT--------CCCT-------------------TTTATCAAGT-TTGTGATAAATTGCACTTTCA-GAAC--TGCTAG-TAAATA-A-----A------------------ATA------CT-----G------GTG-------------T----AAAT------C--CATAGTT--GGTAAATACCAGAA-TCCACAAT-CCAAGCTTGGCGCTATTTG--GTACTc
gi|3 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattTGTAAATACCAGAAATCCACAATCC---GCTTGGCGCTATTTG--GTACTattgtaaataccagaaatccacaatccgcttggcgctatttggtactattgtattaa
gi|4 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattaacgtccatttatcctgcagccactaccattaactatgttgctagttgagagactatccaaaaaaaaacaaaaaacctcacctttgtctgtgcaaacttacatgatctagtatacattttctcccttttatcaagtttgtgataaattgcactttcagaactgctagtaaataaaatactggtgtaaatccatagttggtaaataccagaatccacaatccaagcttggcgctatttggtactatAA-ATG-T-CA-A-GTCAGTCTCCTAGCCAT--TGCTGTTA-----T---TA--CCATTTA--GCTGGTTGATTTAC---TCA--CAGAA--------------------A-TCAA-ACA------CAG---GC-------------AAAAACC------T-GTGTCTGCATAAATGTA---ATGA-TCTAGTATCCATTT-CTTTTCTGACTCTTTTTTTTAATTTTTTG----TTTATCAAGA-GTGTAATGGATTGCACATTCA-GAACGTTGCTTGATAA--A-attgtattaa
gi|5 : taagttgcagtgcttttgtcacagttggatttcatttttgcatttgtgtataatgatcatcacctatttgtactgactttgtaaacaagtctacctgtctgctgtttcccgggtgagatatcaaacaggagattagtcttagtcttacttgatgccttactgggttTTCCAA-ATGGT-CA-G-TTTAGTCTTGCTGCCAT--TGTTGTTT-----T---AAAACCATTTA--GCTGGCTGATTTAT-ATCTG--TAGAAC-----------------AGAGCCAACACAACCTTGTATAAAGCAGAC--T-AAAAGAAAAATC------T-GTGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTTGTGCATTCA-GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------A--CATATTTCAAGTAAATGCCAGAA-TCAACA---T---GCCTAGTGCCATTAA--GTACTTTCAGCACTTTTGATT
gi|6 : AA-ATG-TTCATA-TTTGGTTTTGCAGCATT--TGCAGTT----------AG--CCTTTTATAAATGGCCGAAA-AT-ATCCT--TAGAGC-----------------AGA-CCAG-ACG-TCTA-CAAAACTCAAAT--T-CC--GA-----T------C-GAGTTCACAATAACTTA--TATGA-TA-AGTGTTCATTT-CTATT-----TCTT-------------------CTTAGAAAGT-TTGCGATGGGTTCCACATTTA-GAAC--TCCTTG-TGA--A-G-----ATACTACAAATTTAGCATTATA------CCTTGTAA------ATG-------------TCACTAAAGTTATTAC--CATATTTCATGTAAAT
gi|7 : ggaccgtcctagcctgatgacttggggttAA-ATG-T-CA-AACTCAGTCTCCTAGCCAT--TGCTGTTA-----T---TA--CCATTTA--GCTGGTTGATTTAC--TC--------AC-----------------AGA---AA-TCAAC-------AAGGC---------------AAACC------T-GTGTCTGCATAAATGTA--CATGATTCTAGTATCCATTT-CTTTCTGAC-TCTTTTTTTTATAATTTCTTTTTTTTATCAAGTAGTGTAATGGATTGCACATGCAGGAAC--TGCTA
gi|8 : tgtaaacaagtctacctgttctgctgttgccggtgagatatcaaaaacaggagattagtcttagtctaacttgaagtgccattaatgggtgTTCCAATATGGT-CA-G-TTT-GTCTTGC-TCCAT--T--TGTTT-----TTTAAA--ACATTTA--GCTGGCTGATCTAT-ATCTGATTAGAAC-----------------AGA-GCAC-ACAACCTTGTATAAAGCAGAC--T-AAAAGAAAAATC------TTGTGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTGG--CATTC--GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAA-------C--CATATTTCAGTTAAATGCCAGAA-TC
gi|9 : aggg-A-TCTAGTCTGGT-GTCATACTGCC-TTTGTTGGT---GA--CCATCTA--GCTG-CTGAGATAT-ACCTG--CAGAACCCACCAGACCGGGCACCAGA-CCAATACAAC-----AGAAAGCGAACACC-AA--GAAAACCC------C-GTGTCTGCACAAACGTA--C--------------C-TTT-CT--------CCTT-------------------TTCATCGAGT-TTGTGATGAATTGCATAT-------C--TGCTAG-T-A--A-A-----A------------------TTG------CT-----A------GTG-------------T----
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATAAGAAACAAATATAATTTTTAAGTGTAGTGCTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTCAGATCACTAGCCACCAATGAGTTGGCATTTTGACACAAGCCGTGTCTGCTATCTCTCTATGAAATATCAGATTAGGGGACAGCCTAACCTGATGTCTTAT
Unaligned ( gi|11 ): AGCTGTAGTGCTTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTTCAGATCACTGCCACCAATGAGTTGGCATTTTGACACAAGCCTGTCTGCTATCTCTCTATGAAATATCAGTTAGGGGACCAGCCTAACCTGATGTCTTATGGGATAGAATGTCAGTTC
Alignments
lowQualScore : 1 3333333333 88888888888888888888888888888888888888888888888888888888888888888888 111111 6666666666666666666666666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222
lowQualScore : 5 0 5 666 4 66 1 1111111111 66 66 111 88 11111111111111111111111111111111111111111111111111111111111111111111 44 111111 4 1 7777 4 22 4 3 5555555555555555555555555555555 3 1 3 55 666 55 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 11 1111111 4 0 77
lowQualScore : . . . ... . .. . .......... .. .. ... .. .................................................................... .. ...... . . .... . .. . . ............................... . . . .. ... .. . ................................................................................. . .. ....... . . ..
lowQualScore : 0 0 0 111 8 11 7 0000000000 11 11 444 22 33333333333333333333333333333333333333333333333333333333333333333333 77 555555 6 0 2222 0 33 6 6 6666666666666666666666666666666 6 6 6 00 000 55 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 99 5555555 1 4 99
consensus : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTT-----T---AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACCC-G------TGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
Reference ( family-1483 ) : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTT-----T---AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACCC-G------TGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
gi|1 : AA-ATG-T-CT-T-TTCAATCCTGCAGCCAT--TGGCGTT----------AA--CGATTTA--GTTGGCTGATATAC-ATCTG--TAGT-----------------------CC----CAACCTTACAGAGACCAGAC--T-AA--AAAAAAACT-T------TGTCGACATAAACGTT--CATGA-TTTAGTATCCATTT-CT--------AAGG-------------------TTTAACAAGT-TTGTGATGAATTGCACGTTCA-TAAG--TTCTAG-TAA--A-A-----GCACTAGTATTACACC---ATG------CT-----AATG---GTG-------------TC---AAAGAAA---C--CGTATTTCATGTAAATGTCAGAA-GTCACA---C---ACTTAGCGCTTTCCA--GAATTTTCAGTACTCTTGATT
gi|12 : tgtgtatcatctcaaaacacgcctacctgtgtttatcatctcaaaacacgcctacctgaatactatcttcccgtgaaaaatcagatccgggaccagtttagccaaatgtcttacaagaggggttT-CT--------CCTT-------------------TCTATCAA-T-ATGTGATTGATTGCACATCAA-GAAC--TGTTA---AA--A-ATTGCCA------------------GTATTGCATCT-----T------GTGACTGTTAGCGACTT----AAAT------C--CAAATTTCATGCAACTTTCAAAA-TTTGCA---C---CCTTAACGCTATTCA--GTACTTCCAGTACTTT
gi|13 : g-G------TGTCCGAGTAAACGTATACATGG-C---GTGTCAATTT-CT--------CCTT-------------------TCTATCAAGT-TTGTGATGAGGTGCACTTTCA-GA-----------TAA--ACA-----A------------------GTG------TT-----ACACTTTGT--------------T----AATG------C--CAT-TTTCCTGTGCATGCCAGAA-Tga
gi|14 : ccttTCAAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCTG--T-----T---AA--CCATTTG--GTTAG
gi|15 : aggagaccagtttaacatgtctcacagggataaaG-------------T----AACG------C--CATATTTCATGTGAATGCAGAAA-TTTGCA---C---ACTT-GCGtgtagattcaagcac
gi|16 : aagttagtaataaaaatactagtacatcttgttcagtgtatccaaaCA---T---GCCTAGTGCCAATTAATGTACTTTCAGCACTTTTGAT
gi|2 : aAA-GCAACCTTACAGAATGTGGAC--TCAA--G-----CCC-GATTGCGTGTCAGCATAAAGTTG--TATAA-TCTAGTATCTGTTT-CC--------C--T-------------------TCTATACAGT-TTGTGATGGATAGTAGATTCA-GAAC--TGATAG--AA--A-A-----T------------------ATA------C------A------GTGTATGT--------T----AAAG------TTGCGTA-AGCATGACCATGTCAGAA-TTTACA---A---GCTTTGTCCTACTCG--GTAC
gi|3 : aagcaccaaacatagtggcagcgcttttttgtctccaactggctttctactttcgattttgccacctattagcttagtacttgtttggtttatgcccaatgggatactatataagggcaatctagcctgatgtcttgcgggttttaaaatgccatttcaattttgcaccctttgtcatttcagtagA-ACG-T-CC-A-TTTA-TCCTGCAGCCAC--TACCATT----------AA--CTATGTT--GCTAGTTGAGAGACTATCC----AAAAA-----------------AAA-ACAA-AAAACCTC--------------------------ACCT-T------TGTCTGTGCAAACTTA--CATGA-TCTAGTATACATTTTCT--------CCCT-------------------TTTATCAAGT-TTGTGATAAATTGCACTTTCA-GAAC--TGCTAG-TAAATA-A-----A------------------ATA------CT-----G------GTG-------------T----AAAT------C--CATAGTT--GGTAAATACCAGAA-TCCACAAT-CCAAGCTTGGCGCTATTTG--GTACTc
gi|3 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattTGTAAATACCAGAAATCCACAATCC---GCTTGGCGCTATTTG--GTACTattgtaaataccagaaatccacaatccgcttggcgctatttggtactattgtattaa
gi|4 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattaacgtccatttatcctgcagccactaccattaactatgttgctagttgagagactatccaaaaaaaaacaaaaaacctcacctttgtctgtgcaaacttacatgatctagtatacattttctcccttttatcaagtttgtgataaattgcactttcagaactgctagtaaataaaatactggtgtaaatccatagttggtaaataccagaatccacaatccaagcttggcgctatttggtactatAA-ATG-T-CA-A-GTCAGTCTCCTAGCCAT--TGCTGTTA-----T---TA--CCATTTA--GCTGGTTGATTTAC---TCA--CAGAA--------------------A-TCAA-ACA------CAG---GC-------------AAAAACCT-G------TGTCTGCATAAATGTA---ATGA-TCTAGTATCCATTT-CTTTTCTGACTCTTTTTTTTAATTTTTTG----TTTATCAAGA-GTGTAATGGATTGCACATTCA-GAACGTTGCTTGATAA--A-attgtattaa
gi|5 : taagttgcagtgcttttgtcacagttggatttcatttttgcatttgtgtataatgatcatcacctatttgtactgactttgtaaacaagtctacctgtctgctgtttcccgggtgagatatcaaacaggagattagtcttagtcttacttgatgccttactgggttTTCCAA-ATGGT-CA-G-TTTAGTCTTGCTGCCAT--TGTTGTTT-----T---AAAACCATTTA--GCTGGCTGATTTAT-ATCTG--TAGAAC-----------------AGAGCCAACACAACCTTGTATAAAGCAGAC--T-AAAAGAAAAATCT-G------TGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTTGTGCATTCA-GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------A--CATATTTCAAGTAAATGCCAGAA-TCAACA---T---GCCTAGTGCCATTAA--GTACTTTCAGCACTTTTGATT
gi|6 : AA-ATG-TTCATA-TTTGGTTTTGCAGCATT--TGCAGTT----------AG--CCTTTTATAAATGGCCGAAA-AT-ATCCT--TAGAGC-----------------AGA-CCAG-ACG-TCTA-CAAAACTCAAAT--T-CC--GA-----TC-G------AGTTCACAATAACTTA--TATGA-TA-AGTGTTCATTT-CTATT-----TCTT-------------------CTTAGAAAGT-TTGCGATGGGTTCCACATTTA-GAAC--TCCTTG-TGA--A-G-----ATACTACAAATTTAGCATTATA------CCTTGTAA------ATG-------------TCACTAAAGTTATTAC--CATATTTCATGTAAAT
gi|7 : ggaccgtcctagcctgatgacttggggttAA-ATG-T-CA-AACTCAGTCTCCTAGCCAT--TGCTGTTA-----T---TA--CCATTTA--GCTGGTTGATTTAC--TC--------AC-----------------AGA---AA-TCAAC-------AAGGC---------------AAACCT-G------TGTCTGCATAAATGTA--CATGATTCTAGTATCCATTT-CTTTCTGAC-TCTTTTTTTTATAATTTCTTTTTTTTATCAAGTAGTGTAATGGATTGCACATGCAGGAAC--TGCTA
gi|8 : tgtaaacaagtctacctgttctgctgttgccggtgagatatcaaaaacaggagattagtcttagtctaacttgaagtgccattaatgggtgTTCCAATATGGT-CA-G-TTT-GTCTTGC-TCCAT--T--TGTTT-----TTTAAA--ACATTTA--GCTGGCTGATCTAT-ATCTGATTAGAAC-----------------AGA-GCAC-ACAACCTTGTATAAAGCAGAC--T-AAAAGAAAAATCTTG------TGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTGG--CATTC--GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAA-------C--CATATTTCAGTTAAATGCCAGAA-TC
gi|9 : aggg-A-TCTAGTCTGGT-GTCATACTGCC-TTTGTTGGT---GA--CCATCTA--GCTG-CTGAGATAT-ACCTG--CAGAACCCACCAGACCGGGCACCAGA-CCAATACAAC-----AGAAAGCGAACACC-AA--GAAAACCCC-G------TGTCTGCACAAACGTA--C--------------C-TTT-CT--------CCTT-------------------TTCATCGAGT-TTGTGATGAATTGCATAT-------C--TGCTAG-T-A--A-A-----A------------------TTG------CT-----A------GTG-------------T----
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATAAGAAACAAATATAATTTTTAAGTGTAGTGCTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTCAGATCACTAGCCACCAATGAGTTGGCATTTTGACACAAGCCGTGTCTGCTATCTCTCTATGAAATATCAGATTAGGGGACAGCCTAACCTGATGTCTTAT
Unaligned ( gi|11 ): AGCTGTAGTGCTTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTTCAGATCACTGCCACCAATGAGTTGGCATTTTGACACAAGCCTGTCTGCTATCTCTCTATGAAATATCAGTTAGGGGACCAGCCTAACCTGATGTCTTATGGGATAGAATGTCAGTTC
Alignments
lowQualScore : 1 3333333333 88888888888888888888888888888888888888888888888888888888888888888888 111111 6666666666666666666666666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222
lowQualScore : 5 0 5 666 4 66 1 1111111111 66 66 111 88 11111111111111111111111111111111111111111111111111111111111111111111 44 111111 4 1 7777 4 22 4 3 5555555555555555555555555555555 3 1 3 55 666 55 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 11 1111111 4 0 77
lowQualScore : . . . ... . .. . .......... .. .. ... .. .................................................................... .. ...... . . .... . .. . . ............................... . . . .. ... .. . ................................................................................. . .. ....... . . ..
lowQualScore : 0 0 0 111 8 11 7 0000000000 11 11 444 22 33333333333333333333333333333333333333333333333333333333333333333333 77 555555 6 0 2222 0 33 6 6 6666666666666666666666666666666 6 6 6 00 000 55 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 99 5555555 1 4 99
consensus : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTT-----T---AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACCC-G------TGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
Reference ( family-1483 ) : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTT-----T---AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACCC-G------TGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
gi|1 : AA-ATG-T-CT-T-TTCAATCCTGCAGCCAT--TGGCGTT----------AA--CGATTTA--GTTGGCTGATATAC-ATCTG--TAGT-----------------------CC----CAACCTTACAGAGACCAGAC--T-AA--AAAAAAACT-T------TGTCGACATAAACGTT--CATGA-TTTAGTATCCATTT-CT--------AAGG-------------------TTTAACAAGT-TTGTGATGAATTGCACGTTCA-TAAG--TTCTAG-TAA--A-A-----GCACTAGTATTACACC---ATG------CT-----AATG---GTG-------------TC---AAAGAAA---C--CGTATTTCATGTAAATGTCAGAA-GTCACA---C---ACTTAGCGCTTTCCA--GAATTTTCAGTACTCTTGATT
gi|12 : tgtgtatcatctcaaaacacgcctacctgtgtttatcatctcaaaacacgcctacctgaatactatcttcccgtgaaaaatcagatccgggaccagtttagccaaatgtcttacaagaggggttT-CT--------CCTT-------------------TCTATCAA-T-ATGTGATTGATTGCACATCAA-GAAC--TGTTA---AA--A-ATTGCCA------------------GTATTGCATCT-----T------GTGACTGTTAGCGACTT----AAAT------C--CAAATTTCATGCAACTTTCAAAA-TTTGCA---C---CCTTAACGCTATTCA--GTACTTCCAGTACTTT
gi|13 : g-G------TGTCCGAGTAAACGTATACATGG-C---GTGTCAATTT-CT--------CCTT-------------------TCTATCAAGT-TTGTGATGAGGTGCACTTTCA-GA-----------TAA--ACA-----A------------------GTG------TT-----ACACTTTGT--------------T----AATG------C--CAT-TTTCCTGTGCATGCCAGAA-Tga
gi|14 : ccttTCAAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCTG--T-----T---AA--CCATTTG--GTTAG
gi|15 : aggagaccagtttaacatgtctcacagggataaaG-------------T----AACG------C--CATATTTCATGTGAATGCAGAAA-TTTGCA---C---ACTT-GCGtgtagattcaagcac
gi|16 : aagttagtaataaaaatactagtacatcttgttcagtgtatccaaaCA---T---GCCTAGTGCCAATTAATGTACTTTCAGCACTTTTGAT
gi|2 : aAA-GCAACCTTACAGAATGTGGAC--TCAA--G-----CCC-GATTGCGTGTCAGCATAAAGTTG--TATAA-TCTAGTATCTGTTT-CC--------C--T-------------------TCTATACAGT-TTGTGATGGATAGTAGATTCA-GAAC--TGATAG--AA--A-A-----T------------------ATA------C------A------GTGTATGT--------T----AAAG------TTGCGTA-AGCATGACCATGTCAGAA-TTTACA---A---GCTTTGTCCTACTCG--GTAC
gi|3 : aagcaccaaacatagtggcagcgcttttttgtctccaactggctttctactttcgattttgccacctattagcttagtacttgtttggtttatgcccaatgggatactatataagggcaatctagcctgatgtcttgcgggttttaaaatgccatttcaattttgcaccctttgtcatttcagtagA-ACG-T-CC-A-TTTA-TCCTGCAGCCAC--TACCATT----------AA--CTATGTT--GCTAGTTGAGAGACTATCC----AAAAA-----------------AAA-ACAA-AAAACCTC--------------------------ACCT-T------TGTCTGTGCAAACTTA--CATGA-TCTAGTATACATTTTCT--------CCCT-------------------TTTATCAAGT-TTGTGATAAATTGCACTTTCA-GAAC--TGCTAG-TAAATA-A-----A------------------ATA------CT-----G------GTG-------------T----AAAT------C--CATAGTT--GGTAAATACCAGAA-TCCACAAT-CCAAGCTTGGCGCTATTTG--GTACTc
gi|3 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattTGTAAATACCAGAAATCCACAATCC---GCTTGGCGCTATTTG--GTACTattgtaaataccagaaatccacaatccgcttggcgctatttggtactattgtattaa
gi|4 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattaacgtccatttatcctgcagccactaccattaactatgttgctagttgagagactatccaaaaaaaaacaaaaaacctcacctttgtctgtgcaaacttacatgatctagtatacattttctcccttttatcaagtttgtgataaattgcactttcagaactgctagtaaataaaatactggtgtaaatccatagttggtaaataccagaatccacaatccaagcttggcgctatttggtactatAA-ATG-T-CA-A-GTCAGTCTCCTAGCCAT--TGCTGTTA-----T---TA--CCATTTA--GCTGGTTGATTTAC---TCA--CAGAA--------------------A-TCAA-ACA------CAG---GC-------------AAAAACCT-G------TGTCTGCATAAATGTA---ATGA-TCTAGTATCCATTT-CTTTTCTGACTCTTTTTTTTAATTTTTTG----TTTATCAAGA-GTGTAATGGATTGCACATTCA-GAACGTTGCTTGATAA--A-attgtattaa
gi|5 : taagttgcagtgcttttgtcacagttggatttcatttttgcatttgtgtataatgatcatcacctatttgtactgactttgtaaacaagtctacctgtctgctgtttcccgggtgagatatcaaacaggagattagtcttagtcttacttgatgccttactgggttTTCCAA-ATGGT-CA-G-TTTAGTCTTGCTGCCAT--TGTTGTTT-----T---AAAACCATTTA--GCTGGCTGATTTAT-ATCTG--TAGAAC-----------------AGAGCCAACACAACCTTGTATAAAGCAGAC--T-AAAAGAAAAATCT-G------TGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTTGTGCATTCA-GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------A--CATATTTCAAGTAAATGCCAGAA-TCAACA---T---GCCTAGTGCCATTAA--GTACTTTCAGCACTTTTGATT
gi|6 : AA-ATG-TTCATA-TTTGGTTTTGCAGCATT--TGCAGTT----------AG--CCTTTTATAAATGGCCGAAA-AT-ATCCT--TAGAGC-----------------AGA-CCAG-ACG-TCTA-CAAAACTCAAAT--T-CC--GA-----TC-G------AGTTCACAATAACTTA--TATGA-TA-AGTGTTCATTT-CTATT-----TCTT-------------------CTTAGAAAGT-TTGCGATGGGTTCCACATTTA-GAAC--TCCTTG-TGA--A-G-----ATACTACAAATTTAGCATTATA------CCTTGTAA------ATG-------------TCACTAAAGTTATTAC--CATATTTCATGTAAAT
gi|7 : ggaccgtcctagcctgatgacttggggttAA-ATG-T-CA-AACTCAGTCTCCTAGCCAT--TGCTGTTA-----T---TA--CCATTTA--GCTGGTTGATTTAC--TC--------AC-----------------AGA---AA-TCAAC-------AAGGC---------------AAACCT-G------TGTCTGCATAAATGTA--CATGATTCTAGTATCCATTT-CTTTCTGAC-TCTTTTTTTTATAATTTCTTTTTTTTATCAAGTAGTGTAATGGATTGCACATGCAGGAAC--TGCTA
gi|8 : tgtaaacaagtctacctgttctgctgttgccggtgagatatcaaaaacaggagattagtcttagtctaacttgaagtgccattaatgggtgTTCCAATATGGT-CA-G-TTT-GTCTTGC-TCCAT--T--TGTTT-----TTTAAA--ACATTTA--GCTGGCTGATCTAT-ATCTGATTAGAAC-----------------AGA-GCAC-ACAACCTTGTATAAAGCAGAC--T-AAAAGAAAAATCTTG------TGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTGG--CATTC--GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAA-------C--CATATTTCAGTTAAATGCCAGAA-TC
gi|9 : aggg-A-TCTAGTCTGGT-GTCATACTGCC-TTTGTTGGT---GA--CCATCTA--GCTG-CTGAGATAT-ACCTG--CAGAACCCACCAGACCGGGCACCAGA-CCAATACAAC-----AGAAAGCGAACACC-AA--GAAAACCCC-G------TGTCTGCACAAACGTA--C--------------C-TTT-CT--------CCTT-------------------TTCATCGAGT-TTGTGATGAATTGCATAT-------C--TGCTAG-T-A--A-A-----A------------------TTG------CT-----A------GTG-------------T----
blockSeqs : T G T TA A AC T TGTTGGT AA TA GAG TA TGCAGAACCCACCAGACCGGGCACCAGACCAATACAACAGAAAGCGAACACCAAGAA TT ATTGCG C T ATAC T CT A T TTCTGACTCTTTTTTTTATAATTTCTTTTT A T G GT GAT AT C ATACTACAAATTTAGCATTATACCTTGTAAATGTCACTAAAGTTATTAC A TG ATCCAA A AT
blockSeqs : . G . AA A . C TTTTA . . TTT A TGTAGAACAGAGCCAACACAACCTTGTATAAAGCAGACTAAAAGAA C . A T GT . CT G . TTTCTGACTCTTTTTTTTAATTTTTTG . T . . GT . . TTGCCAGTATTGCATCTTGTGACTGTTAGCGACTTAAATC . TG ATCC A .
blockSeqs : . . . A A . T TT . . TTT A TGATTAGAACAGAGCACACAACCTTGTATAAAGCAGACTAAAAGAA T . T C AC . CT A . ATTTCTT . T . . AC . . TATACAGTGTATGTTAAAGTTG . TA C T .
blockSeqs : . . . A T . T AT . . TTT A CTTAGAGCAGACCAGACGTCTACAAAACTCAAATTCCGA T . T T TT . CT A . CCTT . T . . GT . . AGTGTTACACTTTGTTAATGC . CA C G .
blockSeqs : . . . A A . A TT . . TCT A CACAGAAATCAAACACAGGCAA T . T A AT . CT G . CCTT . T . . AC . . AATACTGGTGTAAATC . CA T G .
blockSeqs : . . . G A . T AT . . GAT . CAAAAAAAAACAAAAAACCTC C . C A AC . CT A . CCCT . C . . GT . . AATACTAGTGTAAAGA . AA A A .
blockSeqs : . . . G . . T . . . AA . ACAGAAATCAACAAGGC T . T T TT . A A . CCTT . C . . T . . AATACTAGTGTAAAC . T .
blockSeqs : A . . C . . . C . T A AC . . G . CCTT . T . . G . . .
blockSeqs : . T C A . . . . CCTT . C . . . . .
blockSeqs : . CT . T . .
blockSeqCons : TT********
originalCons : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTT-----T---AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACCC-G------TGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
finalCons : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTTT--------AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACCC-G------TGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATAAGAAACAAATATAATTTTTAAGTGTAGTGCTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTCAGATCACTAGCCACCAATGAGTTGGCATTTTGACACAAGCCGTGTCTGCTATCTCTCTATGAAATATCAGATTAGGGGACAGCCTAACCTGATGTCTTAT
Unaligned ( gi|11 ): AGCTGTAGTGCTTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTTCAGATCACTGCCACCAATGAGTTGGCATTTTGACACAAGCCTGTCTGCTATCTCTCTATGAAATATCAGTTAGGGGACCAGCCTAACCTGATGTCTTATGGGATAGAATGTCAGTTC
Alignments
lowQualScore : 1 3333333333 88888888888888888888888888888888888888888888888888888888888888888888 111111 6666666666666666666666666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222222
lowQualScore : 5 0 5 666 4 66 1 1111111111 66 66 111 88 11111111111111111111111111111111111111111111111111111111111111111111 44 111111 4 1 7777 4 22 4 3 5555555555555555555555555555555 3 1 3 55 666 55 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 11 1111111 4 0 77
lowQualScore : . . . ... . .. . .......... .. .. ... .. .................................................................... .. ...... . . .... . .. . . ............................... . . . .. ... .. . ................................................................................. . .. ....... . . ..
lowQualScore : 0 0 0 111 8 11 7 0000000000 11 11 444 22 33333333333333333333333333333333333333333333333333333333333333333333 77 555555 6 0 2222 0 33 6 6 6666666666666666666666666666666 6 6 6 00 000 55 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555 4 99 5555555 1 4 99
consensus : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTT-----T---AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACCC-G------TGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
Reference ( family-1483 ) : TTCCAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCCGTTT-----T---AA--CCATTTA--GCTGGCTGATNTAC-ATCCG--TAGAAC-----------------AGA-CCAA-ACAACCTT-CAGAAAGCGGAC--T-AA--GAAAAACCC-G------TGTCCGCANAAACGTA--CATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCGATGGATTGCACATTCA-GAAC--TGCTAG-TAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------C--CATATTTCATGTAAATGCCAGAA-TCCGCA---C---GCTTAGCGCTATTCG--GTACTTTCAGCACTTTTGATT
gi|1 : AA-ATG-T-CT-T-TTCAATCCTGCAGCCAT--TGGCGTT----------AA--CGATTTA--GTTGGCTGATATAC-ATCTG--TAGT-----------------------CC----CAACCTTACAGAGACCAGAC--T-AA--AAAAAAACT-T------TGTCGACATAAACGTT--CATGA-TTTAGTATCCATTT-CT--------AAGG-------------------TTTAACAAGT-TTGTGATGAATTGCACGTTCA-TAAG--TTCTAG-TAA--A-A-----GCACTAGTATTACACC---ATG------CT-----AATG---GTG-------------TC---AAAGAAA---C--CGTATTTCATGTAAATGTCAGAA-GTCACA---C---ACTTAGCGCTTTCCA--GAATTTTCAGTACTCTTGATT
gi|12 : tgtgtatcatctcaaaacacgcctacctgtgtttatcatctcaaaacacgcctacctgaatactatcttcccgtgaaaaatcagatccgggaccagtttagccaaatgtcttacaagaggggttT-CT--------CCTT-------------------TCTATCAA-T-ATGTGATTGATTGCACATCAA-GAAC--TGTTA---AA--A-ATTGCCA------------------GTATTGCATCT-----T------GTGACTGTTAGCGACTT----AAAT------C--CAAATTTCATGCAACTTTCAAAA-TTTGCA---C---CCTTAACGCTATTCA--GTACTTCCAGTACTTT
gi|13 : g-G------TGTCCGAGTAAACGTATACATGG-C---GTGTCAATTT-CT--------CCTT-------------------TCTATCAAGT-TTGTGATGAGGTGCACTTTCA-GA-----------TAA--ACA-----A------------------GTG------TT-----ACACTTTGT--------------T----AATG------C--CAT-TTTCCTGTGCATGCCAGAA-Tga
gi|14 : ccttTCAAA-ATG-T-CA-A-TTCAGTCTTGCAGCCAT--TGCTG--T-----T---AA--CCATTTG--GTTAG
gi|15 : aggagaccagtttaacatgtctcacagggataaaG-------------T----AACG------C--CATATTTCATGTGAATGCAGAAA-TTTGCA---C---ACTT-GCGtgtagattcaagcac
gi|16 : aagttagtaataaaaatactagtacatcttgttcagtgtatccaaaCA---T---GCCTAGTGCCAATTAATGTACTTTCAGCACTTTTGAT
gi|2 : aAA-GCAACCTTACAGAATGTGGAC--TCAA--G-----CCC-GATTGCGTGTCAGCATAAAGTTG--TATAA-TCTAGTATCTGTTT-CC--------C--T-------------------TCTATACAGT-TTGTGATGGATAGTAGATTCA-GAAC--TGATAG--AA--A-A-----T------------------ATA------C------A------GTGTATGT--------T----AAAG------TTGCGTA-AGCATGACCATGTCAGAA-TTTACA---A---GCTTTGTCCTACTCG--GTAC
gi|3 : aagcaccaaacatagtggcagcgcttttttgtctccaactggctttctactttcgattttgccacctattagcttagtacttgtttggtttatgcccaatgggatactatataagggcaatctagcctgatgtcttgcgggttttaaaatgccatttcaattttgcaccctttgtcatttcagtagA-ACG-T-CC-A-TTTA-TCCTGCAGCCAC--TACCATT----------AA--CTATGTT--GCTAGTTGAGAGACTATCC----AAAAA-----------------AAA-ACAA-AAAACCTC--------------------------ACCT-T------TGTCTGTGCAAACTTA--CATGA-TCTAGTATACATTTTCT--------CCCT-------------------TTTATCAAGT-TTGTGATAAATTGCACTTTCA-GAAC--TGCTAG-TAAATA-A-----A------------------ATA------CT-----G------GTG-------------T----AAAT------C--CATAGTT--GGTAAATACCAGAA-TCCACAAT-CCAAGCTTGGCGCTATTTG--GTACTc
gi|3 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattTGTAAATACCAGAAATCCACAATCC---GCTTGGCGCTATTTG--GTACTattgtaaataccagaaatccacaatccgcttggcgctatttggtactattgtattaa
gi|4 : cggtctgctatctatcgatgaggtaccagataggggactagtttagtctgccgtcatacgggcttaattaacgtccatttatcctgcagccactaccattaactatgttgctagttgagagactatccaaaaaaaaacaaaaaacctcacctttgtctgtgcaaacttacatgatctagtatacattttctcccttttatcaagtttgtgataaattgcactttcagaactgctagtaaataaaatactggtgtaaatccatagttggtaaataccagaatccacaatccaagcttggcgctatttggtactatAA-ATG-T-CA-A-GTCAGTCTCCTAGCCAT--TGCTGTTA-----T---TA--CCATTTA--GCTGGTTGATTTAC---TCA--CAGAA--------------------A-TCAA-ACA------CAG---GC-------------AAAAACCT-G------TGTCTGCATAAATGTA---ATGA-TCTAGTATCCATTT-CTTTTCTGACTCTTTTTTTTAATTTTTTG----TTTATCAAGA-GTGTAATGGATTGCACATTCA-GAACGTTGCTTGATAA--A-attgtattaa
gi|5 : taagttgcagtgcttttgtcacagttggatttcatttttgcatttgtgtataatgatcatcacctatttgtactgactttgtaaacaagtctacctgtctgctgtttcccgggtgagatatcaaacaggagattagtcttagtcttacttgatgccttactgggttTTCCAA-ATGGT-CA-G-TTTAGTCTTGCTGCCAT--TGTTGTTT-----T---AAAACCATTTA--GCTGGCTGATTTAT-ATCTG--TAGAAC-----------------AGAGCCAACACAACCTTGTATAAAGCAGAC--T-AAAAGAAAAATCT-G------TGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTTGTGCATTCA-GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAAG------A--CATATTTCAAGTAAATGCCAGAA-TCAACA---T---GCCTAGTGCCATTAA--GTACTTTCAGCACTTTTGATT
gi|6 : AA-ATG-TTCATA-TTTGGTTTTGCAGCATT--TGCAGTT----------AG--CCTTTTATAAATGGCCGAAA-AT-ATCCT--TAGAGC-----------------AGA-CCAG-ACG-TCTA-CAAAACTCAAAT--T-CC--GA-----TC-G------AGTTCACAATAACTTA--TATGA-TA-AGTGTTCATTT-CTATT-----TCTT-------------------CTTAGAAAGT-TTGCGATGGGTTCCACATTTA-GAAC--TCCTTG-TGA--A-G-----ATACTACAAATTTAGCATTATA------CCTTGTAA------ATG-------------TCACTAAAGTTATTAC--CATATTTCATGTAAAT
gi|7 : ggaccgtcctagcctgatgacttggggttAA-ATG-T-CA-AACTCAGTCTCCTAGCCAT--TGCTGTTA-----T---TA--CCATTTA--GCTGGTTGATTTAC--TC--------AC-----------------AGA---AA-TCAAC-------AAGGC---------------AAACCT-G------TGTCTGCATAAATGTA--CATGATTCTAGTATCCATTT-CTTTCTGAC-TCTTTTTTTTATAATTTCTTTTTTTTATCAAGTAGTGTAATGGATTGCACATGCAGGAAC--TGCTA
gi|8 : tgtaaacaagtctacctgttctgctgttgccggtgagatatcaaaaacaggagattagtcttagtctaacttgaagtgccattaatgggtgTTCCAATATGGT-CA-G-TTT-GTCTTGC-TCCAT--T--TGTTT-----TTTAAA--ACATTTA--GCTGGCTGATCTAT-ATCTGATTAGAAC-----------------AGA-GCAC-ACAACCTTGTATAAAGCAGAC--T-AAAAGAAAAATCTTG------TGCCTGCAAAAACGTT--TATGA-TCTAGTATCCGTTT-CT--------CCTT-------------------TTTATCAAGT-TTGCAATGGGTGG--CATTC--GAAC--TGCAAA-CAA--A-A-----A------------------ATA------CT-----A------GTG-------------T----AAA-------C--CATATTTCAGTTAAATGCCAGAA-TC
gi|9 : aggg-A-TCTAGTCTGGT-GTCATACTGCC-TTTGTTGGT---GA--CCATCTA--GCTG-CTGAGATAT-ACCTG--CAGAACCCACCAGACCGGGCACCAGA-CCAATACAAC-----AGAAAGCGAACACC-AA--GAAAACCCC-G------TGTCTGCACAAACGTA--C--------------C-TTT-CT--------CCTT-------------------TTCATCGAGT-TTGTGATGAATTGCATAT-------C--TGCTAG-T-A--A-A-----A------------------TTG------CT-----A------GTG-------------T----
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TATAAGAAACAAATATAATTTTTAAGTGTAGTGCTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTCAGATCACTAGCCACCAATGAGTTGGCATTTTGACACAAGCCGTGTCTGCTATCTCTCTATGAAATATCAGATTAGGGGACAGCCTAACCTGATGTCTTAT
Unaligned ( gi|11 ): AGCTGTAGTGCTTTTTTTGACACCAGTTCAAATTCTACTTTCATTTTCATGTGTTCAGATCACTGCCACCAATGAGTTGGCATTTTGACACAAGCCTGTCTGCTATCTCTCTATGAAATATCAGTTAGGGGACCAGCCTAACCTGATGTCTTATGGGATAGAATGTCAGTTC