lowQualScore : 44444444444444444444444444444444444444444444444444444444444 11111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 55 2 2 22222 2 22 222 2 555555 2 222 33 444 22 2 22 11111111111111111111111111111111111111111111111111111111111 4 44 999999999999 1 22222 4 11111111111111111 1 2222 1 8888888888888888 11 5555 1 1 222 1 11111 33333 1111 1 1 22 33333333 11111 4444444444444 1 1111111 22 11 333 1 2222 33333333 1111111111111111111111111111111111111111111111111111111111111111111111111111111 3 2 333 1 6666666666666 1 4 1 1 4 2 44444 1 3 1 5555 2 1 111 666666 1 111111 1 5555 3333 22222 22222222222 1111 11 666666666666666666666666 222 777777777777777777777777777777777 333333 1 11
lowQualScore : 7 55 0 0 4 3 00000 0 55 77 4 111 8 2 666666 0 6 777 11 2 555 77 0 6 11 33333333333333333333333333333333333333333333333333333333333 6 0 44 000000000000 5 99999 0 00000000000000000 0 2 0000 6 8888888888888888 99 7 6 2222 0 0 0 8 8 6 1 6 777 5 0 6 66666 6 99 2 7 55555 2222 3 0 2 0 888 55 22222222 5 5 22222 5555555555555 7 99 4444444 4 5 55 5 8 66 555 5 1 1 6666 44444444 5 1 5 6666666666666666666666666666666666666666666666666666666666666666666666666666666 5 5 5 4 5 6 6 666 7 3 6 6666666666666 3 0 6 3 3 6 0 3 55 0 2 88888 0 2 3 0 1111 8 6 0 000 666666 3 3 3 0 3 2 666666 0 7777 3 8888 88888 3 0 11111111111 7777 33 2 888888888888888888888888 6 000 666666666666666666666666666666666 444444 0 99 6 2
lowQualScore : . .. . . . . ..... . .. .. . ... . . ...... . . ... .. . ... .. . . .. ........................................................... . . .. ............ . ..... . ................. . . .... . ................ .. . . .... . . . . . . . . ... . . . ..... . .. . . ..... .... . . . . ... .. ........ . . ..... ............. . .. ....... . . .. . . .. ... . . . .... ........ . . . ............................................................................... . . . . . . . ... . . . ............. . . . . . . . . .. . . ..... . . . . .... . . . ... ...... . . . . . . ...... . .... . .... ..... . . ........... .... .. . ........................ . ... ................................. ...... . .. . .
lowQualScore : 0 00 0 0 0 0 55555 0 55 55 0 000 5 5 555555 0 0 000 00 5 555 55 0 0 00 00000000000000000000000000000000000000000000000000000000000 0 0 00 555555555555 0 22222 0 55555555555555555 0 5 8888 2 7777777777777777 00 3 0 7777 8 8 6 0 0 0 4 0 000 6 8 7 77777 7 88 5 3 77777 4444 7 1 4 4 666 00 33333333 0 0 55555 9999999999999 1 00 1111111 3 7 11 7 4 44 666 0 4 4 4444 00000000 7 7 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 7 3 7 7 7 000 3 3 7 3333333333333 3 0 7 3 3 7 0 2 88 0 5 00000 0 0 8 0 2222 7 7 0 222 888888 2 2 2 0 2 5 555555 0 8888 2 8888 55555 2 8 22222222222 8888 88 5 888888888888888888888888 0 888 555555555555555555555555555555555 555555 0 88 0 5
consensus : NACATATA--TATTCAAAACCAGAAAANTNGAATGAAAATNTAAAAAGGAAACNNATAAACTANTTTTTTTTCCCAAAAANCTCGAAAATAAAGTATNATCCTTTAACAAGAAGTTACCCCTCCTTGAATGTATTAGGANTG-AAAAAGCAAGACAAAACACTTTAGAAAAAAAATAT--AATTAAAT---CATCAGT------GCTAACTTCTTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAN-TGAGGTTCCTAAANCNTGTGGTTGTATCACGGGTATTGTAAACAAT-ACAG-GGTGTAGG-GTCTCTAA--C--T--CTAAT-GGTGCCACAAA---CTGTGAAAAAA-------AT---GC--GACGAATTCTTAG-CTTTATAAATT---ACGACAGAAAAATGATTAAAA-TGCAACCATT-TTGTACAATGAAAT-TAAAGAATTCAAAATTAAGAAG-CAAA-----A-ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATT-G-AAA-GACTGTAACCTTC-C-AAAATTC-T-----GAACA--TTT-TTA--TGTTTTCAGTTGAGAC---AN--GCTTTGA-GTGC-AAT-AGTTTTTT-TTATCAA-GTAAAAAATAAAT-CG-CC-GAT-AGATGTTCA-CGGTTC-ACTCGGCGACTG--ATG-TA--AA--A---AACTA-----A------A----------ACA-----------TAGGA------C-C-GCGGTA-TCATAG-GACGGGAGTANNNNNNNNCAAGTTTCATTCCAA-A-CTCCTGCGGAAATACCTTGGATT-TGGGTCT-TAT-ATGAAA--TTTAAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGAC-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCCTTC-TGTTT-GGGTT-TGTTC-----AATGTTGATTTATAGC-ACCGTCACTTGGCTATCGACGGTTGTTGAT-TAAAAC---GTTTACAT-GACTTCTTCT-TAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCTAT--A---CTA-T---TTCCTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAGGACC--G-TG-T--TC--AAGCG-GAAA--CTACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
Reference ( gi|1 ) : AACAAATAATTATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAATAACCTTGAAAATAAAG-ATG--CCTTTAACAAG-AGTTACCTCTTAT-GAATGTATTAGGACTGGAAAAAGCAAGACAA--CACTT-AGGAAAGCAATATAGAAT--AATTTGCAGCAGGAAAAAAGC--ACTACT-----AGGCAA--AGA-------ACTCTTGCTGTTTTACATTTGAAAAATGAGGTTCCTA--TCCTAAGA--GTATCACGGGTATTGTAAAAAAA-ACAGCGGTGTAGG-TTCTCTAAAAC-GTG-CTAAT-GGTGCCACAAA---CTGAAAAAAAA-------AT---G---GACGAATTCTTAGCTTTTACAAATTTACATGACAGAAAAATGATTAAAA-TGCAACCATT-T-GTACAATAAAA--GAAGTAATTCAAAATTAAGAAG-CAAA-----A-ACATGACGGGAATTAAG-AAAAGTACTGAAAAAAATGCGCCAGATT-TTCAGGCGTTTTATGAATT-G-AA--GACTGTAACCCTCAC-AAAATTC-T-----GAACA-GTTTATTA--TATTT-CAGTTGGAAC---AT--GTGTTGA-GTGC-CAT-AGTTTTTT-TTATCAAGGTAAAAAATAAAT-CG-C--GAT-A-ATGTTCA-CAGTTC-ACTCGGCGACTG--AAG-TA--AA--A---AACTA-----A------A----------AC------------TAGGA------C-C-GCGGTA-T-ATAG-GACGGGAGTAATTATATCCAAGTT-CATTCCCACA-CTCCTGCGGAAATACCTTGGATT-TGGGTCT-TATCATGAAAGATTTAAATAC-GTACCTCGAAGCATACGAA-TG-GTCAACTAGAAATACCC-TGGACGAGCTGTGCATCAGACTCCATC-ATTGGCACATT-CTTTCACTTCAACTTAGTTCAGTAATCCTTCCTGTTT-GGGTT-TGTTTT-TCAAATGTTGATTTATAGC-ACCGTCACTTGGCTATCGACGGTTGTTGAT-TAAAACAGTGTTTACATTGGGTTCTTCT-AATTCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCTA---A---CTA-T---T--CTA-CATCGACCAGAACG-TAAAACCGACCAAGTTAGAACC--G-TG-T--TC--AAGC--GAAA--TTA-G-TCATTCAGTA-ACAATATGAACGAACGTTTCATTAC
gi|3 : ACATATA--TATTCAAAACCAGAAAATTGGAATGAAA-TGT-AAAAGGAA-CCAATAAACTAATTTTTT---CCAA-AACTTCGAAAATAAAG--TGATCCTTTAACAAGAAGTTACCCTTCTT-GAATGTA-TAGGAAT---AAAAACAAGACAA--CACTT-
gi|2 : TATTCAAA-CCA-AAAAATTGAATGAAAATTTAAAAAGGAAACACATAA--TATTTTTTTTTCCCAAAAAACTTGAAAATAAAGTATC--CTTTTAACAAG-AGTTACCCCTTCTTGAATGTAT-AGGACTG-AAAAAGCAAGACAAAACACTTTAGAAAAAAAATAT--AATTAAAT---CATCAGT------GCTAACTTCTTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCTA--ATCTATGGTTGTATCACGGGTATTGTAAACAAT-ACAG-GGTGTAGGGTTCTCTAA--CTGTT-CTAATCGGTGCCACAAA---CTGAAAAAAAA-------GT---T---GACGAATTCTTAGCTTT-ATAAATT-ACATGACAGAAAAATGATTAAAAATGCAACCATT-T-GTACAATGAAATTGAAG-AATTCAAAA-TAAGAAG-CAAA-----A-ACATGACGGGAATTAAGAAAAAGTACTG-AAAAAATGC-CCAGATTATCCAGCCG--TTATGAATT-G-AAAGGACTGTTACCTTCCA-AAAATTCTT-----GAACATGTTTA-TA--T-TTT-CAGTTGAAAC---AT--GTGTTGA-GTCC-AAT-AG-TTTTT-TTATCAA-GTAAAAAA-AAAT-CGCC--GATAA-ATG-TCA-CAGTTCAACTC-GCGACTG--AAG-T----A--A---AACTA-----A------A----------CCA-----------TAGGGC-----C-C-GCGGTA-TCATAGCGAC-GGAGTAttgtaactgggctggtttacgaaatcaggttgtgatacccttgctgtttacatttgaaattgaggttcctaaatcatggtatcacggtattgtaaacaaatacagggtgtagggtttctaacttgtctaatggtgccaaactgaaaaaacatgcgacgaattcttaggctttataaattactacagaaaatgattaaatgcaaccattgtgttaaatgaaatggaagatatcaaaaattaagaagccaaaaacatgacgggaattaagaaagtatgaaaaaatgccagattattcagtcgttattgaattaaactgtaccttcaaaattctgaacatgtttatattttcatctgaaacatgtgttgagtgcaaataagtttttatcaagtaaaaataatcgccggataaatgtcaccagttcatcgcgctgtaaagttataactaaaccataggccgaggtatcatagacgggatt
gi|3 : a-------ACCCTTGCTGTTT-ACATTTGAAAT-TGAGGTTCCTAAATCATG-----GTATCACGG-TATTGTAAACAAATACAG-GGTGTAGG-GTTTCTAA--C-TTGTCTAAT-GGTGCCA--AA---CTG-AAAAAAC-------AT---GC--GACGAATTCTTAGGCTTTATAAATT---ACTACAG-AAAATGATT-AAA-TGCAACCATTGT-GTTAAATGAAATGGAAGATATCAAAAATTAAGAAGCCAAA-----A-ACATGACGGGAATTAAG--AAAGTA-TGAAAAAA---TGCCAGATTATTCAGTCGTTAT-TGAATT----A--AACTGT-ACCTT--C-AAAATTC-T-----GAACATGTTTA-TA--T-TTT-CATCTGAAAC---AT--GTGTTGA-GTGCAAATAAG---TTT-TTATCAA-GT-AAAAAT-AAT-CG-CCGGATAA-ATG-TCACCAGTTC-A-TC-GCG-CTGTAAAG-T---TA--T---AACTA-----A------A----------CCA-----------TAGG-------C-C-GAGGTA-TCATA--GACGGGA
gi|7 : acatatatattcaaaaccagaaaattggaatgaaatgtaaaaggaaccaataaactaattttttccaaaacttcgaaaataaagtgatcctttaacaagaagttacccttcttgaatgtataggaataaaaacaagacaacacttttgtaactgggctggtttacgaaatcaggttgtgatTATTGTACA------CAG-GGTGTATG-GTCT-------------TAAT-GGTGCCACAA----CTGTGAAAAAATTTTGTTATCTCGCTCGACGTATTCTTAA---TTATAAAT------GATAGAAAAATTATT--------------T-T-CTTCAATGAAA--TAAAGAATTCAAAATTATGAAT-TAAA-----A--CATGACGGAAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTCTGACGTT--ATAAATT-G-AAA-GACTGTA-CCTTC-C-AAAATTC-T-----TAACA--TTT-TTA--TATTTTCAGATGAGAC---AA--GCTTTGA-GTGC-AAT-AGTTTTTTATTAT----GTAAAAAATAAAT-CGTC--GAT-AGATGT-CA-CGGTTC-ACTCG-TGACTT--GTG-TA--AA--A-----CTA-----A------ATTACCGCGATACCA----------TAGGATCCGACC-C-GCGGTA-TCATAG-GATGGGAGTAtt
gi|15 : aAAAAAT-ACAG-GGTGTAGG-GTC-------------CTAAT-GGTGCCACAAAGTTCTGTGAAAAt
gi|13 : cagtttattgcctaaaatATGACAGAAACATGATTAAAA-TGCAACCATT-TTGTACAATGAAA--TAAAGAATTCAAAATTAAGAAG-CAAA-----A-ACATG---------------AAATACTG-AAAAAATGT-CCAGA-T-TTCAGTCGCTATATG--TT-GAAA--GACT-CCATCTTC-C-AAAATTC-T-----ttttttgttatctcgtttgatgtatttttagatat
gi|8 : ataCAGAAAAATGATTAAAA-TGCAACCATT-TTGTACAGTGAAA--TAAATAATTCAGAATTAAGAAG-CAAATTCATATACATGACGGGACTTAAG-AAAAGTAATGAAAAA--TGC-CCAG-TT-TTCAGTCATT--ATAAATT-G-AAA-GACTGTA-CCTTC-C-AACAATC-T-----GAATA--TTT-TTA--TATTTTCAGCTGAGAT---AG--GCTTTAAAGTGT-AAT-AGTTTTTC---ATCA-TGTAAAAAATAAAT-CG-CC-GAT-AGATGT-CA-CGGTTC-ACTCG-TGACTG--ATG-TA--AA--ATCAAATTACCGCGG------A----------ACCA----------TAGGAG-----C-C-GCGGTA-TGATAG-GACGGta
gi|9 : gGAAG-CAAA-----A-ACATGACGGGAATCACG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTTGGTCGTTTTA--AATT-G-AAA-GACTGTA--CCTTGC-AAAATTC-T-----TAATA--TTT-TTA--TGTTTTCAGTTGAGAC---AA--GCTTTGA-GTGC-AAT-AGTTTCTA---ATCATGGTAAAAAAGAAATTCG-CC-GAT-AGATGT-CA-TGGTCC-ACTTG-TGACTG--ATGCTA--AACTA---AATTA-----CCGCGGTA----------ACG-----------TAGGA------CTC-GCGGTA-TCATAG-GACGGGAGTA
gi|11 : GATT-TTCA--CTTGTTATAAATTAG-AA--GGATATA---CTTACCAAAATTC-C-----GGACA--TCT-TTAACTGTTT-T-GTTGTGACAAAATTAATGTCGC-GTGTATAT-AGTTGTTTATTATC----T-AAAAATAACT-CG-CT-GAT-AGATG-TCG-CGGTTA-ACTCG-----TA--ACG-TATGAA--A---ATCCG-----A------A----------ATACCTCGGTACCGTAGGA------C-CTGCGGTACC-ATAG-GACGGGAGTtac
gi|12 : tgC-AAAATTC-TTTAAAAAAAA-ATTT-T------TTT-CAGTTGAGAC---AG--GCTTTCA-GTGC-AAT-A--TTTTT-TTCTC-ATGTACAAATTAAATCCC-C--GAT-AGATG-TCA-CGGTTC-ACTC-GTGACTG--ATG-T----G--A---AACT------A------A----------AC------------T---A------C-C-GCGGTA-TCATAG-
gi|4 : ctgcatctacCAAGTTTCATTCCAA-A-CTCCTGCGTAAATACCTTGGATT-TGG-TCT-TAT-ATGAAAT-TTTAAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAA-TACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGAACCATTTCTTTCACTTCAACTTAGTTCAA-GGTCCTTC-TGTTT-TGG----GTTTTGTCAA-TGTTGATTTATAGC-ACCGTCACTTGGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTACAT-GACTTCTTCT-TAACCATATACTTT--ATTTATC--TCCACACACC--AAGAGTC--AAATTGTGCGGTTCCTATTTA---CTA-T---TTCTTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--G-TG-T--TTCAAAGCGGGAAAACTTACGTTCATTCAGT--ACAATATGGACGAACGTTTCATataagtaatggataataatacgggacggtaatcaaatacatgtat
gi|6 : AAGTTTCATTCCAA-A-CTCCTGCGGAAATACCTTGG--T-TGGGTCT--AT-ATGAAA--TTTAAATAC-GTACCT-GAAGCATACGAACTG-GTCAAC-AGAAATAACC-TG-ACGGACC-TGCATCAGACTCCATC-ATTGAC-CATT-CTTTCACTTCAACTTAGTTCCA-AGTCCTTC-TGTTTTGGGTT-TGTTC-----AATGT-GATT-ATAGC-ACCGTCACTTGGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTACAATGACTTCTTCTTAAT--ATATACTTT--ATTTA-C-TTACACACA-C--AAGAGTC--AAATTGTGC-GTTCCTAT--A---CTATT---T--CTA-CCTCGACCAAAACGTTAAAACCGA--AAGT---GACCGAG-TG-TTGTC--AA-C--GAAA--CTACG-TCATTCAGTA-ACAATATGGACGAACGTTTa
gi|5 : TT-CATTTCCAAATCTCCTGCGGAAATACCTTGGATTGTGGGTCTATAT-------GATTTAAATACCGTATCT-GAA-CATACGAA-TGCGT-AAC-AGAAAT--CC-TGGACGGACC-TGCATCAGACTCCATCAATTGAC-CATT-CTTTCCTTTCAACTTAGTTCA--AGTCCTTCTT-TTT-GGGTT-TGTTC-----AATGTTTCATTATAGCAACCGTCACTTGGCTATCGACGGTT-TTGTTATAAAAC---GTT--CAT--GATTCTTCT-TAATCATATACCTTTAATTGATCATTCCACACA-CCTAAGAGTCCAAAATTGTCGGGTTCCTG---ATACCTA-TTTCT--TTACCCTCGACCAAAACG-T-AAACCGA--AAG-TAGA--C--GTTG-T--TT--CAGC--GAAA--CTACG-TCATTCAGTACACAATATGGAAGAAC-TTTCATtc
gi|14 : cagttAAC-AGAAATACCCCTGGACGGACC-TGCATCATACTCCATC-ATTGGC-CATT-CTTTCACTTCAACTTAGTTCA--AGTCCac
gi|10 : TTT-GGGTTGTGTTC-----AATGTTGATATGCGGC-ACCG-CATTT------CGACC-------AT-CAAAG--GCGTTTACAT-GACTTCTTCT-CAATCAT---------------T-TTCCAAACA-T--AAGAGTT--AAATTGTGCGATTCCTAT--A---CTT-T---TTCCT--CCTAGACTAAAACG-TTAAACCGA--AAG-TAG-ACC--G-TGTT--TC--AAGCA-GAAA--CAA-G-TCACTTAGTT-ATAATATGGACGAACGTTACATTnnnnnnnnnnnnnnnnnnnnnnnnngatttaga
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GTGTAAAGAACTTCATCAGAGTAAGAATAATACATCCATTTTCACACAAAGGA
Unaligned ( gi|17 ): ACCATAGGACGTGGGGTATCATAGGATGGGAGTATACAT
Unaligned ( gi|18 ): TAACGTTGGCTCATAGCTTATGCCATACATGATCAAATG
Alignments
lowQualScore : 11 2 2 2 33 444444 2 11 2 1 33 222222222 11 99999999999999999999999999999999 1 11 555555555555 11 66666666666666 1111 1 5555555555555555 1 1 22222222 22 1111111 1 111 11 111111 11111 1 1 111 22 2222 111 11111111 666666666666666666666666666666666666666 222222 1 111 1 1 1 1111 1 1 1 1 1 111 1 1111 1 111 11 1111 11 111 111 11 22 11 11 11 2222 11
lowQualScore : 4 88 3 3 1 1 3 1 6 7 22 00 1 7 88 0 555555 3 55 7 3 1 3 7 00 555555555 88 66666666666666666666666666666666 7 7 3 44 666666666666 6 0 88 8 8 11111111111111 8 4444 1 8888888888888888 0 2 0 88888888 99 22 6 6 5 1111111 77 0 5 5 9 0 111 5 66 777 4 4 222222 5 5 66 3 1 22222 5 5 5 5 8 0 000 5 00 5 5 0 44 5 5 3333 5 000 99999999 111111111111111111111111111111111111111 111111 8 4 4 88888888 3 0 111 3 0 2 5 0 4444 0 0 0 2 0 0 2 8 0 0 44 8 8 8 8 8 777 6 6 6 3 6 4444 0 3 8 0 8 5 0 5 1 8 444 0 8 8 5 0 11 0 5 88 2222 11 8 111 8 333 88 777 11 8 55 11 8 11 11 4444 88 5 8 44
lowQualScore : . .. . . . . . . . . .. .. . . .. . ...... . .. . . . . . .. ......... .. ................................ . . . .. ............ . . .. . . .............. . .... . ................ . . . ........ .. .. . . . ....... .. . . . . . ... . .. ... . . ...... . . .. . . ..... . . . . . . ... . .. . . . .. . . .... . ... ........ ....................................... ...... . . . ........ . . ... . . . . . .... . . . . . . . . . . .. . . . . . ... . . . . . .... . . . . . . . . . . ... . . . . . .. . . .. .... .. . ... . ... .. ... .. . .. .. . .. .. .... .. . . ..
lowQualScore : 0 33 7 3 0 0 7 0 7 3 00 33 0 3 33 7 333333 7 77 3 7 0 3 3 77 000000000 33 33333333333333333333333333333333 3 3 3 33 777777777777 7 8 00 0 0 22222222222222 0 8888 2 5555555555555555 0 5 0 22222222 88 77 7 7 7 0000000 11 7 7 7 4 0 999 0 88 222 4 4 888888 0 0 99 1 0 55555 0 0 0 0 5 0 555 0 55 0 0 2 99 0 0 6666 0 111 11111111 222222222222222222222222222222222222222 777777 9 4 4 00000000 2 0 000 2 0 5 5 0 0000 0 0 0 5 0 0 5 0 8 8 00 0 0 0 0 0 444 7 7 7 3 7 2222 8 5 0 8 0 0 8 0 0 0 000 8 0 0 0 8 00 6 6 88 2222 00 0 888 0 888 88 222 00 0 88 00 0 00 00 2222 88 0 0 00
consensus : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAAACACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGTATG--CCTTTAACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AATAT--AATT-AAT---CA-CAGG------GCTGACT-CT-GTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCTAA-TCCTA-GG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA----CT--TCTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTT-TTATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGTTCA-CGGTTC-ACTCG-GCGACTGATG-TA--AA---A----AACTA------A------A----------N-----------C-GTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATT-CCAA-A-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TA-GACC--GTG-T--TC--AAGC-G--AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
Reference ( family-1457 ) : NACATATA--TATTCAAAACCAGAAAANTNGAATGAAAATNTAAAAAGGAAACNNATAAACTANTTTTTTTTCCCAAAAANCTCGAAAATAAAGTATNATCCTTTAACAAGAAGTTACCCCTCCTTGAATGTATTAGGANTG-AAAAAGCAAGACAAAACACTTTAGAAAAAAAATAT--AATTAAAT---CATCAGT------GCTAACTTCTTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAN-TGAGGTTCCTAAANCNTGTGGTTGTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA----C---TCTAAT-GGTGCCACAAA---CTGTGAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTAAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TGTTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTT-TTATCA-AG-TAAAAAATAAA-TCGCC-GATAGATGTTCA-CGGTTC-ACTCG-GCGACTGATG-TA--AA---A----AACTA------A------A----------A-----------C-ATAGGA------C-C-GCGGTATCATAG-GACGGGAGTANNNNNNNNCAAGTTTCATT-CCAA-A-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAGGACC--GTG-T--TC--AAGCGG--AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
gi|1 : ACAAATAATTATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAATAACCTTGAAAATAAAG-ATG--CCTTTAACAAGA-GTTACCTCTTAT-GAATGTATTAGGACTGGAAAAAGCAAGACAA--CACTT-AGGAAAGCAATATAGAAT--AATTTGCAGCAGGAAAAAAGC--ACTACT-----AGGCAA--AGA-------ACTCTTGCTGTTTTACATTTGAAAAATGAGGTTCCTA--TCCTAAGA--GTATCACGGGTATTGTAAAA-AAAACAGCGGTGTAGGT-TCTCTAAAACGT---GCTAAT-GGTGCCACAAA---CTGAAAAAAAA-------AT---G---GACGAATTCTTA-GCTTTTACAAATTTACAT--GACAGAAAAATGATT-AAAATGCAACCATTT-GTACAATAAAA--GAAGTA-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAAATGCGCCAGATT-TTCAGGCGTTTTATGAATTGAA--GACTGTAACCCT-CAC-AAAATTC-T------GAACAGTTTATTA--TATTT-CAGTTGGAACATGTGT-----T-GAGTGC-C-AT-AGTTTTTT-TTATCA-AGGTAAAAAATAAA-TCGC--GATA-ATGTTCA-CAGTTC-ACTCG-GCGACTGAAG-TA--AA---A----AACTA------A------A----------A-----------C--TAGGA------C-C-GCGGTAT-ATAG-GACGGGAGTAATTATATCCAAGTT-CATT-CCCACA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTATCATGAAAGATTT-AAATAC-GTACCTCGAAGCATACGAA-TG-GTCAACTAGAAATACCC-TGGACGAGCTGTGCATCAGACTCCATC-ATTGG-CACATT-CTTTCACTTCAACTTAGTTCAGTAATCC-TTCCTG-TTT-GGGTT-TGTTTTTCAAATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAACAGTGTTTAC-ATTGGGTTCTTCTAATTCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A---A-CTATT---CTA-CATCGACCAGAACG-TAAAACCGACCAAGTTAGAACC--GTG-T--TC--AAGC-G--AAAT-TA-G-TCATTCAGTA-ACAATATGAACGAACGTTTCATT
gi|10 : a-TTC-TA-TTTTGGGTTGTGTTC----AATGTTGATATGCGGC-ACCG-CATTTCGACCATCAAAGG--------------C---GTTTAC-AT-GACTTCTTCTCAATCAT---------------T-TTCCAAACA-T--AAGAGTT--AAATTGTGCGATTCCT-A--TA-CTTTTTC-CT--CCTAGACTAAAACGTT-AAACCGA--AAG-TA-GACC--GTGTT--TC--AAGCAG--AAAC--AAG-TCACTTAGTT-ATAATATGGACGAACGTTACATTac
gi|11 : gagcactttttcaagGATT-TTCACTTGTT--ATAAATTAGAA-GGATATA--CTTAC-C-AAAATTC-C------GGACA-TCT-TTAACTGTTTT--GTTGTGACAAAATTAATGTC-GCGTGT-ATAT-AGTTGTTTATTATC-----TAAAAA-TAAC-TCGCT-GATAGATGT-CG-CGGTTA-ACTCG------TAACG-TATGAA---A----ATCCG------A------A----------ATACCTCGGTACC-GTAGGA------C-CTGCGGTACCATAG-GACGGGAGT
gi|12 : tgATCTA-C-C-AAAATTC-TTTAAAAAAAAA-TTT-TT-------TTCAGTTGAGACAGGCTT-----T-CAGTGC-A-AT-A--TTTTT-TTCTCA-TG-TACAAATTAAA-TCCCC-GATAGATG-TCA-CGGTTC-ACTC--GTGACTGATG-T----G---A----AACTA------A------A----------C-----------T------A------C-C-GCGGTATCATAG-
gi|13 : ctgcATA---AT--GACAGAAACATGATT-AAAATGCAACCATTTTGTACAATGAAA-TAAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATG---------------AAATACTGAAAAAA-TGT-CCAGA-T-TTCAGTCGCTATATG--TTGAAA-GACT-CCATCTT-C-C-AAAATTC-T------ataagtaatggataataatacgggacggtaatcaaatacatgtat
gi|14 : AAC-AGAAATACCCCTGGACGGACC-TGCATCATACTCCATC-ATTGG-C-CATT-CTTTCACTTCAACTTAGTTC-A-AGTCCNNNN-NN-NNN-NNNNN-NNNNN----NNNNNNGATTTAta
gi|15 : TAAA--AATACAG-GGTGTAGGG-TC--------------CTAAT-GGTGCCACAAAGTTCTGTGAAAAga
gi|17 : cagtttattgcctaaaa-----------C-ATAGGA------CGT-GGGGTATCATAG-GATGGGAGTAttttttgttatctcgtttgatgtatttttagatat
gi|2 : acA--TATTCAAA-CCA-AAAAATTGAATGAAAATTTAAAAAGGAAACACATAA--TATTTTTTTTTCCCAAAAAACTTGAAAATAAAGTATC--CTTTTAACAAGA-GTTACCCCTTCTTGAATGTAT-AGGACTG-AAAAAGCAAGACAAAACACTTTAGAAAAAAAATAT--AATTAAAT---CATCAGT------GCTAACTTCTTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCTAA--TCTATGGTTGTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGGTTCTCTAA----CTGTTCTAATCGGTGCCACAAA---CTGAAAAAAAA-------GT----T--GACGAATTCTTA-GCTTT-ATAAATT---ACATGACAGAAAAATGATTAAAAATGCAACCA-TTTGTACAATGAAATTGAAG-A-ATTCAAAA-TAAGAAG-CAAA---A---ACATGACGGGAATTAAGAAAAAGTACTGAAAAAA-TGC-CCAGATTATCCAGCCG--TTATGAATTGAAAGGACTGTTACCTT-C-CAAAAATTCTT------GAACA-TGT-TTA--TATTTTCAGTTGAAACATGTGT-----T-GAGTCC-A-AT-AG-TTTTT-TTATCA-AG-TAAAAAA-AAA-TCGCC-GATAAATG-TCA-CAGTTCAACTC--GCGACTGAAG-T----A---A----AACTA------A------A----------C-----------C-ATAGGGC-----C-C-GCGGTATCATAGCGAC-GGAGTAtacat
gi|3 : ACATATA--TATTCAAAACCAGAAAATTGGAATGAAA-TGTAAAAGG--AACCAATAAACTAATTTTTT---CCAAAA-CTTCGAAAATAAAGT--GATCCTTTAACAAGAAGTTACCCTTC-TTGAATGTAT-AGGAATA-AAAA--CAAGACAA--CACTTT----------TGT--AACT------------GG------GCTG-------GTTTACGAAATCAGGTTGTGATACCCTTGCTGTTT-ACATTTGAAAT-TGAGGTTCCTAAATCATG-----GTATCAC-GGTATTGTAAACAAATACAG-GGTGTAGGG-TTTCTAA----CTTGTCTAAT-GGTGC--CAAA---CTG-AAAAAAC-------AT---GC--GACGAATTCTTAGGCTTT-ATAAATT---AC--TACAG-AAAATGATT--AAATGCAACCATTGTGTTAAATGAAATGGAAG-ATATCAAAAATTAAGAAGCCAAA---A---ACATGACGGGAATTAAG--AAAGTA-TGAAAAAA-TG--CCAGATTATTCAGTCGTTAT-TGAATT---A-AACTGT-ACCTT---C-AAAATTC-T------GAACA-TGT-TTA--TATTTTCATCTGAAACATGTGT-----T-GAGTGCAA-ATAAG---TTT-TTATCA-AG-T-AAAAAT-AA-TCGCCGGATAAATG-TCACCAGTTC-A-TCGCGC------TG-TA--AA---GTTATAACTA------A------A----------C-----------C-ATAGG-------C-C-GAGGTATCATA--GACGGGA
gi|4 : CAAGTTTCATT-CCAA-A-CTCCTGCGTAAATACCTTGGATT-TGG-TCTTAT-ATGAAA--TTTTAAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAA-TACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGAAC-CATTTCTTTCACTTCAACTTAGTTCAA-GGTCC-TTC-TG-TTTTGGGTT-TTGTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAACCATATACTTT--ATTTATC--TCCACACACC--AAGAGTC--AAATTGTGCGGTTCCT-ATTTA-CTATTTC-TTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TA-GACC--GTG-T--TTCAAAGCGGGAAAACTTACGTTCATTCAGT--ACAATATGGACGAACGTTTCATtt
gi|5 : TTTCATTTCCAA-ATCTCCTGCGGAAATACCTTGGATTGTGGGTCT-AT-ATGA----TTT-AAATACCGTATCT-GAA-CATACGAA-TGCGT-AAC-AGAAAT---CCTGGACGGACC-TGCATCAGACTCCATCAATTGA-C-CATT-CTTTCCTTTCAACTTAGTTC-A-AGTCC-TTC-TT-TTT-GGGTT-TGTTC----AATGTTTCATTATAGCAACCGTCACTT-GGCTATCGACGGTT-TTGTTATAAAAC---GTT--C-AT-GA-TTCTTCTTAATCATATACCTTTAATTGATCATTCCACACA-CCTAAGAGTCCAAAATTGTCGGGTTCCTGA--TACCTATTTCTTTACCCTCGACCAAAACGT--AAACCGA--AAG-TA-GACG--TTG-T--TT--CAGC-G--AAAC-TACG-TCATTCAGTACACAATATGGAAGAAC-TTTCATa
gi|6 : cagtAAGTTTCATT-CCAA-A-CTCCTGCGGAAATACCTTGG--T-TGGGTCT-AT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAACTG-GTCAAC-AGAAATAACCT--GACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCCA-AGTCC-TTC-TGTTTT-GGGTT-TGTTC----AATG-TGA-TTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTACAAT-GACTTCTTCTTAAT-ATATACTTT--ATTTA-C-TTACACACA-C--AAGAGTC--AAATTGTGC-GTTCCT-A--TA-CTATTT--CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-T--GACCGAGTG-TTGTC--AA-C-G--AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTac
gi|7 : TATTGTA------CACAG-GGTGTATGG-TCT--------------TAAT-GGTGCCACAA----CTGTGAAAAAATTTTGTTATCTCGCTCGACGTATTCTTA-A--TT-ATAAAT--------GATAGAAAAAT---------------TATTTTCTTCAATGAAAT-AAAG-A-ATTCAAAATTATGAAT-TAAA---A----CATGACGGAAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTCTGACGTT--ATAAATTGAAA-GACTGTA-CCTT-C-C-AAAATTC-T------TAACA-TTT-TTA--TATTTTCAGATGAGACAAGCTT-----T-GAGTGC-A-AT-AGTTTTTTATTAT----G-TAAAAAATAAA-TCGTC-GATAGATGT-CA-CGGTTC-ACTCG--TGACTTGTG-TA--AA---A------CTA------A------ATTACCGCGATA-----------CCATAGGATCCGACC-C-GCGGTATCATAG-GATGGGAGTAtc
gi|8 : aCAGAAAAATGATT-AAAATGCAACCATTTTGTACAGTGAAA-TAAAT-A-ATTCAGAATTAAGAAG-CAAATTCATATACATGACGGGACTTAAG-AAAAGTAATG-AAAAA-TGC-CCAG-TT-TTCAGTCA--TTATAAATTGAAA-GACTGT-ACCTT-C-C-AACAATC-T------GAATA-TTT-TTA--TATTTTCAGCTGAGATAGGCTT-----TAAAGTGT-A-AT-AG--TTTT-TCATCA-TG-TAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTC--GTGACTGATG-TA--AAATCA----AATTACCGCGGA------A----------C-----------C-ATAGGAG-----C-C-GCGGTATGATAG-GACGGt
gi|9 : gGAAG-CAAA---A---ACATGACGGGAATCACG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTTGGTCGTTTTA--AATTGAAA-GACTGTA-CCTT-G-C-AAAATTC-T------TAATA-TTT-TTA--TGTTTTCAGTTGAGACAAGCTT-----T-GAGTGC-A-AT-AG--TTTC-TAATCATGG-TAAAAAAGAAATTCGCC-GATAGATG-TCA-TGGTCC-ACTT--GTGACTGATGCTA--AACT-A----AATTA------CCGCGGTA----------A-----------C-GTAGGA------CTC-GCGGTATCATAG-GACGGGAGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTAAAGAACTTCATCAGAGTAAGAATAATACATCCATTTTCACACAAAGGA
Unaligned ( gi|18 ): TAACGTTGGCTCATAGCTTATGCCATACATGATCAAATG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 11 22 1 1 1 1 1 11 3333333333333333333333333333333333333333333333333333 1 1 4444444444444 11 555555555555555 1111 5555555555555555 1 1 22222222 22 1111111 1 111 11 111111 11111 1 22 2222 111 22222222 5555555555555555555555555555 222222 2 1 1 1 1 111 1 1 1 1 1 11 111 1 1111 1 111 11 1111 11 111 111 11 11 11 11 111 11
lowQualScore : 1 88 3 3 3 7 5 6 88 7 7 0 00 5 3 3 3 3 7 88 7777777777777777777777777777777777777777777777777777 7 7 3 3 4444444444444 6 0 88 8 8 444444444444444 8 4444 8 8888888888888888 0 2 0 88888888 99 22 6 6 5 1111111 77 0 5 5 9 0 111 5 66 777 4 4 222222 5 5 66 1 22222 5 5 5 5 8 5 77 5 00 5 5 0 44 5 5 3333 5 000 77777777 3333333333333333333333333333 111111 8 4 4 3 0 0 3 0 2 5 0 777 0 0 0 2 0 0 2 8 0 00 0 8 8 8 8 8 777 6 6 6 3 6 4444 0 3 8 0 8 5 0 5 1 8 444 0 8 8 5 0 11 0 5 88 2222 11 8 111 8 333 88 777 11 8 0 8 11 8 11 11 8 444 88 5 8 44
lowQualScore : . .. . . . . . . .. . . . .. . . . . . . .. .................................................... . . . . ............. . . .. . . ............... . .... . ................ . . . ........ .. .. . . . ....... .. . . . . . ... . .. ... . . ...... . . .. . ..... . . . . . . .. . .. . . . .. . . .... . ... ........ ............................ ...... . . . . . . . . . . . ... . . . . . . . . . .. . . . . . . ... . . . . . .... . . . . . . . . . . ... . . . . . .. . . .. .... .. . ... . ... .. ... .. . . . .. . .. .. . ... .. . . ..
lowQualScore : 0 33 3 3 3 3 3 7 33 3 3 7 77 0 3 3 3 3 3 33 7777777777777777777777777777777777777777777777777777 3 3 3 3 7777777777777 7 8 00 0 0 666666666666666 0 8888 8 5555555555555555 0 5 0 22222222 88 77 7 7 7 0000000 11 7 7 7 4 0 999 0 88 222 4 4 888888 0 0 99 0 55555 0 0 0 0 5 0 88 0 55 0 0 2 99 0 0 6666 0 111 99999999 0000000000000000000000000000 777777 9 4 4 2 0 0 2 0 5 5 0 000 0 0 0 5 0 0 5 0 8 88 8 0 0 0 0 0 444 7 7 7 3 7 2222 8 5 0 8 0 0 8 0 0 0 000 8 0 0 0 8 00 6 6 88 2222 00 0 888 0 888 88 222 00 0 8 0 00 0 00 00 0 000 88 0 0 00
consensus : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTTAACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGAC--AACACTTTAG-GAAAG-AATATA-ANT-AAT---CA-CAGG------GCTGACT--CTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTA-NG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA--C--T--T-CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTT-TTATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGTTCA-CGGTTC-ACTCG-GCGACTGATG-TA--AA---A----AACTA------A------AC-----------CGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAA--ATTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TT-CTG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-A-TGACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
Reference ( family-1457 ) : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAAACACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-ATGCCTTTAACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGAC--AACACTTTAG-GAAAG-AATATA-ATT-AAT---CA-CAGG------GCTGACT--CTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTA-GG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA--C--T--T-CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTT-TTATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGTTCA-CGGTTC-ACTCG-GCGACTGATG-TA--AA---A----AACTA------A------AN-----------CGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATT-CCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAA--ATTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TT-CTG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-A-TGACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
gi|1 : ACAAATAATTATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAATAACCTTGAAAATAAAG--ATGCCTTTAACAAGA-GTTACCTCTT-ATGAATGTATTAGGACTGGAAAAAGCAAGAC--AACACTT-AG-GAAAGCAATATAGAAT-AATTTGCAGCAGGAAAAAAGC--ACTA-CT----AGGCAA--AGA-------ACTCTTGCTGTTTTACATTTGAAAAATGAGGTTCCT-A-TCCTA-AGA-GTATCACGGGTATTGTAAAA-AAAACAGCGGTGTAGGT-TCTCTAAAAC--G--TGCTAAT-GGTGCCACAAA---CTGAAAAAAAA-------AT---G---GACGAATTCTTA-GCTTTTACAAATTTACAT--GACAGAAAAATGATT-AAAATGCAACCATTT-GTACAATAAAA--GAAGTA-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAAATGCGCCAGATT-TTCAGGCGTTTTATGAATTGAA--GACTGTAACCCT-CAC-AAAATTC-T------GAACAGTTTATTA--TATTT-CAGTTGGAACATGTGT-----T-GAGTGC-C-AT-AGTTTTTT-TTATCA-AGGTAAAAAATAAA-TCGC--GATA-ATGTTCA-CAGTTC-ACTCG-GCGACTGAAG-TA--AA---A----AACTA------A------AA-----------C-TAGGA------C-C-GCGGTAT-ATAG-GACGGGAGTAATTATATCCAAG-TTCATTCCCACA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTATCATGAAAGATTT-AAATAC-GTACCTCGAAGCATACGAA-TG-GTCAACTAGAAATA-CCCTGGACGAGCTGTGCATCAGACTCCATC-ATTGG-CACATT-CTTTCACTTCAACTTAGTTCAGTAATCC-TTCCTG-TTT-GGGTT-TGTTTTTCAAATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAACAGTGTTTAC-ATTGGGTTCTTCTAATTCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A---A-CTATT---CTA-CATCGACCAGAACG-TAAAACCGACCAAGTTAGAACC--GTG-T--TC--AAGC-G---AAAT-TA-G-TCATTCAGTA-ACAATATGAACGAACGTTTCATT
gi|10 : a-TT-CTA-TTTTGGGTTGTGTTC----AATGTTGATATGCGGC-ACCG-CATTTCGACCATCAAAGG--------------C---GTTTAC-A-TGACTTCTTCTCAATCAT---------------T-TTCCAAACA-T--AAGAGTT--AAATTGTGCGATTCCT-A--TA-CTTTTTC-CT--CCTAGACTAAAACGTT-AAACCGA--AAG-TAG-ACC--GTGTT--TC--AAGCAG---AAAC--AAG-TCACTTAGTT-ATAATATGGACGAACGTTACATTac
gi|11 : gagcactttttcaagGATT-TTCACTTGTT--ATAAATTAGAA-GGATATA--CTTAC-C-AAAATTC-C------GGACA-TCT-TTAACTGTTTT--GTTGTGACAAAATTAATGTC-GCGTGT-ATAT-AGTTGTTTATTATC-----TAAAAA-TAAC-TCGCT-GATAGATGT-CG-CGGTTA-ACTCG------TAACG-TATGAA---A----ATCCG------A------AATACCTCGGTACCGTAGGA------C-CTGCGGTACCATAG-GACGGGAGT
gi|12 : tgATCTA-C-C-AAAATTC-TTTAAAAAAAAA-TTT-TT-------TTCAGTTGAGACAGGCTT-----T-CAGTGC-A-AT-A--TTTTT-TTCTCA-TG-TACAAATTAAA-TCCCC-GATAGATG-TCA-CGGTTC-ACTC--GTGACTGATG-T----G---A----AACTA------A------AC-----------T-----A------C-C-GCGGTATCATAG-
gi|13 : ctgcATA---AT--GACAGAAACATGATT-AAAATGCAACCATTTTGTACAATGAAA-TAAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATG---------------AAATACTGAAAAAA-TGT-CCAGA-T-TTCAGTCGCTATATG--TTGAAA-GACT-CCATCTT-C-C-AAAATTC-T------ataagtaatggataataatacgggacggtaatcaaatacatgtat
gi|14 : AAC-AGAAATACCCCTGGACGGACC-TGCATCATACTCCATC-ATTGG-C-CATT-CTTTCACTTCAACTTAGTTC-A-AGTCCNNN-NNN-NNN-NNNNN-NNNNN----NNNNNNGATTTAta
gi|15 : TAAA--AATACAG-GGTGTAGGG-TC---------------CTAAT-GGTGCCACAAAGTTCTGTGAAAAga
gi|17 : cagtttattgcctaaaa------AC-----------CATAGGA------CGT-GGGGTATCATAG-GATGGGAGTAttttttgttatctcgtttgatgtatttttagatat
gi|2 : A--TATTCAAA-CCA-AAAAATTGAATGAAAATTTAAAAAGGAAACACATAA--TATTTTTTTTTCCCAAAAAACTTGAAAATAAAGT-ATCCTTTTAACAAGA-GTTACCCCTTCTTGAATGTAT-AGGACTG-AAAAAGCAAGACAAAACACTTTAGAAAAAA-AATATA-ATTAAAT---CATCAGT------GCTAACTTCTTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AAT-CTATGGTTGTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGGTTCTCTAA--CTGT--T-CTAATCGGTGCCACAAA---CTGAAAAAAAA-------GT----T--GACGAATTCTTA-GCTTT-ATAAATT---ACATGACAGAAAAATGATTAAAAATGCAACCA-TTTGTACAATGAAATTGAAG-A-ATTCAAAA-TAAGAAG-CAAA---A---ACATGACGGGAATTAAGAAAAAGTACTGAAAAAA-TGC-CCAGATTATCCAGCCG--TTATGAATTGAAAGGACTGTTACCTT-C-CAAAAATTCTT------GAACA-TGT-TTA--TATTTTCAGTTGAAACATGTGT-----T-GAGTCC-A-AT-AG-TTTTT-TTATCA-AG-TAAAAAA-AAA-TCGCC-GATAAATG-TCA-CAGTTCAACTC--GCGACTGAAG-T----A---A----AACTA------A------AC-----------CATAGGGC-----C-C-GCGGTATCATAGCGAC-GGAGTAtacat
gi|3 : ACATATA--TATTCAAAACCAGAAAATTGGAATGAAA-TGTAAAA-GGAACCA-ATAAACTAATTTTTT---CCAAAA-CTTCGAAAATAAAGTGAT-CCTTTAACAAGAAGTTACCCTTC-TTGAATGTAT-AGGAATA-AAAA--CAAGAC--AACACTTT-----------TGTA-ACT------------GG------GCTG-------GTTTACGAAATCAGGTTGTGATACCCTTGCTGTTT-ACATTTGAAAT-TGAGGTTCCTAAATC--A-TG--GTATCAC-GGTATTGTAAACAAATACAG-GGTGTAGGG-TTTCTAA--C--TTGT-CTAAT-GGTGC--CAAA---CTG-AAAAAAC-------AT---GC--GACGAATTCTTAGGCTTT-ATAAATT---AC--TACAG-AAAATGATT--AAATGCAACCATTGTGTTAAATGAAATGGAAG-ATATCAAAAATTAAGAAGCCAAA---A---ACATGACGGGAATTAAG--AAAGTA-TGAAAAAA-TG--CCAGATTATTCAGTCGTTAT-TGAATT---A-AACTGT-ACCTT---C-AAAATTC-T------GAACA-TGT-TTA--TATTTTCATCTGAAACATGTGT-----T-GAGTGCAA-ATAAG---TTT-TTATCA-AG-T-AAAAAT-AA-TCGCCGGATAAATG-TCACCAGTTC-A-TCGCGC------TG-TA--AA---GTTATAACTA------A------AC-----------CATAGG-------C-C-GAGGTATCATA--GACGGGA
gi|4 : CAAGTTTCATT-CCAAA-CTCCTGCGTAAATACCTTGGATT-TGG-TCTTAT-ATGAA--ATTTTAAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAA-TACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGAAC-CATTTCTTTCACTTCAACTTAGTTCAA-GGTCC-TT-CTG-TTTTGGGTT-TTGTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTAC-A-TGACTTCTTCTTAACCATATACTTT--ATTTATC--TCCACACACC--AAGAGTC--AAATTGTGCGGTTCCT-ATTTA-CTATTTC-TTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TTCAAAGC-GGGAAAACTTACGTTCATTCAGT--ACAATATGGACGAACGTTTCATtt
gi|5 : TTTCATTTCCAAATCTCCTGCGGAAATACCTTGGATTGTGGGTCT-AT-ATGA----TTT-AAATACCGTATCT-GAA-CATACGAA-TGCGT-AAC-AGAAAT---CCTGGACGGACC-TGCATCAGACTCCATCAATTGA-C-CATT-CTTTCCTTTCAACTTAGTTC-A-AGTCC-TT-CTT-TTT-GGGTT-TGTTC----AATGTTTCATTATAGCAACCGTCACTT-GGCTATCGACGGTT-TTGTTATAAAAC---GTT--C-A-TGA-TTCTTCTTAATCATATACCTTTAATTGATCATTCCACACA-CCTAAGAGTCCAAAATTGTCGGGTTCCTGA--TACCTATTTCTTTACCCTCGACCAAAACGT--AAACCGA--AAG-TAG-ACG--TTG-T--TT--CAGC-G---AAAC-TACG-TCATTCAGTACACAATATGGAAGAAC-TTTCATa
gi|6 : cagtAAGTTTCATT-CCAAA-CTCCTGCGGAAATACCTTGG--T-TGGGTCT-AT-ATGAA--ATTT-AAATAC-GTACCT-GAAGCATACGAACTG-GTCAAC-AGAAATAACCT--GACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCCA-AGTCC-TT-CTGTTTT-GGGTT-TGTTC----AATG-TGA-TTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTACAA-TGACTTCTTCTTAAT-ATATACTTT--ATTTA-C-TTACACACA-C--AAGAGTC--AAATTGTGC-GTTCCT-A--TA-CTATTT--CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-T-G-ACCGAGTG-TTGTC--AA-C-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTac
gi|7 : TATTGTA------CACAG-GGTGTATGG-TCT---------------TAAT-GGTGCCACAA----CTGTGAAAAAATTTTGTTATCTCGCTCGACGTATTCTTA-A--TT-ATAAAT--------GATAGAAAAAT---------------TATTTTCTTCAATGAAAT-AAAG-A-ATTCAAAATTATGAAT-TAAA---A----CATGACGGAAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTCTGACGTT--ATAAATTGAAA-GACTGTA-CCTT-C-C-AAAATTC-T------TAACA-TTT-TTA--TATTTTCAGATGAGACAAGCTT-----T-GAGTGC-A-AT-AGTTTTTT---ATTA-TG-TAAAAAATAAA-TCGTC-GATAGATGT-CA-CGGTTC-ACTCG--TGACTTGTG-TA--AA---ACTA-AATTACCGCG-AT-----AC-----------CATAGGATCCGACC-C-GCGGTATCATAG-GATGGGAGTAtc
gi|8 : aCAGAAAAATGATT-AAAATGCAACCATTTTGTACAGTGAAA-TAAAT-A-ATTCAGAATTAAGAAG-CAAATTCATATACATGACGGGACTTAAG-AAAAGTAATG-AAAAA-TGC-CCAG-TT-TTCAGTCA--TTATAAATTGAAA-GACTGT-ACCTT-C-C-AACAATC-T------GAATA-TTT-TTA--TATTTTCAGCTGAGATAGGCTT-----TAAAGTGT-A-AT-AG--TTTT-TCATCA-TG-TAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTC--GTGACTGATG-TA--AAATCA----AATTACCGCGGA------AC-----------CATAGGAG-----C-C-GCGGTATGATAG-GACGGt
gi|9 : gGAAG-CAAA---A---ACATGACGGGAATCACG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTTGGTCGTTTTA--AATTGAAA-GACTGTA-CCTT-G-C-AAAATTC-T------TAATA-TTT-TTA--TGTTTTCAGTTGAGACAAGCTT-----T-GAGTGC-A-AT-AG--TTTC-TAATCATGG-TAAAAAAGAAATTCGCC-GATAGATG-TCA-TGGTCC-ACTT--GTGACTGATGCTA--AACT-A----AATTA------CCGCGGTAA-----------CGTAGGA------CTC-GCGGTATCATAG-GACGGGAGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTAAAGAACTTCATCAGAGTAAGAATAATACATCCATTTTCACACAAAGGA
Unaligned ( gi|18 ): TAACGTTGGCTCATAGCTTATGCCATACATGATCAAATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 11 22 1 1 1 1 1 1 11 33333333333333333333333333333333333333333333333333333 1 1 111111 333 11 555555555555555 1111 5555555555555555 1 1 22222222 22 1111111 1 111 11 111111 11111 22 3 22 111 22222222 5555555555555555555 1 222222 1 1 1 1 1 1111 1 1 1 1 1 111 1 1111 1 111 11 1111 11 111 111 11 11 11 11 111 11
lowQualScore : 1 88 3 3 3 7 3 88 7 7 0 00 3 3 3 3 3 3 7 88 44444444444444444444444444444444444444444444444444444 7 7 3 3 666666 1 666 6 0 88 8 8 444444444444444 8 4444 8 8888888888888888 0 2 0 88888888 99 22 6 6 5 1111111 77 0 5 5 9 0 111 5 66 777 4 4 222222 5 5 66 1 22222 5 5 5 5 77 5 77 5 00 5 5 0 3 5 5 66 1 5 000 77777777 9999999999999999999 0 111111 8 4 4 3 5 0 3 0 2 5 0 4444 0 0 0 2 0 0 2 8 0 0 44 8 8 8 8 8 777 6 6 6 3 6 4444 0 3 8 0 8 5 0 5 1 8 444 0 8 8 5 0 11 0 5 88 2222 11 8 111 8 333 88 777 11 8 0 8 11 8 11 11 8 444 88 5 8 44
lowQualScore : . .. . . . . . .. . . . .. . . . . . . . .. ..................................................... . . . . ...... . ... . . .. . . ............... . .... . ................ . . . ........ .. .. . . . ....... .. . . . . . ... . .. ... . . ...... . . .. . ..... . . . . .. . .. . .. . . . . . . .. . . ... ........ ................... . ...... . . . . . . . . . . . .... . . . . . . . . . . .. . . . . . ... . . . . . .... . . . . . . . . . . ... . . . . . .. . . .. .... .. . ... . ... .. ... .. . . . .. . .. .. . ... .. . . ..
lowQualScore : 0 33 3 3 3 3 3 33 3 3 7 77 3 3 3 3 3 3 3 33 00000000000000000000000000000000000000000000000000000 3 3 3 3 000000 0 777 7 8 00 0 0 666666666666666 0 8888 8 5555555555555555 0 5 0 22222222 88 77 7 7 7 0000000 11 7 7 7 4 0 999 0 88 222 4 4 888888 0 0 99 0 55555 0 0 0 0 66 0 88 0 55 0 0 2 9 0 0 22 1 0 111 99999999 7777777777777777777 0 777777 9 4 4 2 0 0 2 0 5 5 0 0000 0 0 0 5 0 0 5 0 8 8 00 0 0 0 0 0 444 7 7 7 3 7 2222 8 5 0 8 0 0 8 0 0 0 000 8 0 0 0 8 00 6 6 88 2222 00 0 888 0 888 88 222 00 0 8 0 00 0 00 00 0 000 88 0 0 00
consensus : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C--TGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA--C--T--T-CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AG-TTTTT-TTATCA-NG-TAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTCG-GCGACTGATG-TA--AA---A----AACTACCGCG--A-----------ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
Reference ( family-1457 ) : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C--TGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTANG---GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA--C--T--T-CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTT-TTATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGTTCA-CGGTTC-ACTCG-GCGACTGATG-TA--AA---A----AACTA-------A-----------ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
gi|1 : ACAAATAATTATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAATAACCTTGAAAATAAAG--ATGCCTTT-AACAAGA-GTTACCTCTT-ATGAATGTATTAGGACTGGAAAAAGCAAGACAA--CACTT-AGGAAAGCAA-TATAGAATAA-TTTGCAGCAGGAAAAAAGC--ACTAC--T----AGGCAA--AGA-------ACTCTTGCTGTTTTACATTTGAAAAATGAGGTTCCT-A-TCCTAAGA--GTATCACGGGTATTGTAAAA-AAAACAGCGGTGTAGGT-TCTCTAAAAC--G--TGCTAAT-GGTGCCACAAA---CTGAAAAAAAA-------AT---G---GACGAATTCTTA-GCTTTTACAAATTTACAT--GACAGAAAAATGATT-AAAATGCAACCATTT-GTACAATAAAA--GAAGTA-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAAATGCGCCAGATT-TTCAGGCGTTTTATGAATTGAA--GACTGTAACCCT-CAC-AAAATTC-T------GAACAGTTTATTA--TATTT-CAGTTGGAACATGTGT-----T-GAGTGC-C-AT-AGTTTTTT-TTATCA-AGGTAAAAAATAAA-TCGC--GATA-ATGTTCA-CAGTTC-ACTCG-GCGACTGAAG-TA--AA---A----AACTA-------A-----------AAC-TAGGA------C-C-GCGGTAT-ATAG-GACGGGAGTAATTATATCCAAGTT-CATTCCCACA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTATCATGAAAGATTT-AAATAC-GTACCTCGAAGCATACGAA-TG-GTCAACTAGAAATACCC-TGGACGAGCTGTGCATCAGACTCCATC-ATTGG-CACATT-CTTTCACTTCAACTTAGTTCAGTAATCC-TTCCTG-TTT-GGGTT-TGTTTTTCAAATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAACAGTGTTTAC-ATTGGGTTCTTCTAATTCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A---A-CTATT---CTA-CATCGACCAGAACG-TAAAACCGACCAAGTTAGAACC--GTG-T--TC--AAGC-G---AAAT-TA-G-TCATTCAGTA-ACAATATGAACGAACGTTTCATT
gi|10 : a-TTC-TA-TTTTGGGTTGTGTTC----AATGTTGATATGCGGC-ACCG-CATTTCGACCATCAAAGG--------------C---GTTTAC-AT-GACTTCTTCTCAATCAT---------------T-TTCCAAACA-T--AAGAGTT--AAATTGTGCGATTCCT-A--TA-CTTTTTC-CT--CCTAGACTAAAACGTT-AAACCGA--AAG-TAG-ACC--GTGTT--TC--AAGCAG---AAAC--AAG-TCACTTAGTT-ATAATATGGACGAACGTTACATTac
gi|11 : gagcactttttcaagGATT-TTCACTTGTT--ATAAATTAGAA-GGATATA--CTTAC-C-AAAATTC-C------GGACA-TCT-TTAACTGTTTT--GTTGTGACAAAATTAATGTC-GCGTGT-ATAT-AGTTGTTTATTATC-----TAAAAA-TAAC-TCGCT-GATAGATG-TCG-CGGTTA-ACTCG------TAACG-TATGAA---A----ATCCG-------AAATACCTCGGTACCGTAGGA------C-CTGCGGTACCATAG-GACGGGAGT
gi|12 : tgATCTA-C-C-AAAATTC-TTTAAAAAAAAA-TTT-TT-------TTCAGTTGAGACAGGCTT-----T-CAGTGC-A-AT-A--TTTTT-TTCTCA-TG-TACAAATTAAA-TCCCC-GATAGATG-TCA-CGGTTC-ACTC--GTGACTGATG-T----G---A----AACTA-------A-----------ACT-----A------C-C-GCGGTATCATAG-
gi|13 : ctgcATA---AT--GACAGAAACATGATT-AAAATGCAACCATTTTGTACAATGAAA-TAAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATG---------------AAATACTGAAAAAA-TGT-CCAGA-T-TTCAGTCGCTATATG--TTGAAA-GACT-CCATCTT-C-C-AAAATTC-T------ataagtaatggataataatacgggacggtaatcaaatacatgtat
gi|14 : AAC-AGAAATACCCCTGGACGGACC-TGCATCATACTCCATC-ATTGG-C-CATT-CTTTCACTTCAACTTAGTTC-A-AGTCCNNNN-NN-NNN-NNNNN-NNNNN----NNNNNNGATTTAta
gi|15 : TAAA--AATACAG-GGTGTAGGG-TC---------------CTAAT-GGTGCCACAAAGTTCTGTGAAAAga
gi|17 : cagtttattgcctaaaa-----------ACCATAGGA------CGT-GGGGTATCATAG-GATGGGAGTAttttttgttatctcgtttgatgtatttttagatat
gi|2 : A--TATTCAAA-CCA-AAAAATTGAATGAAAATTTAAAAAGGAAACACATAA--TATTTTTTTTTCCCAAAAAACTTGAAAATAAAGT-AT-CCTTTTAACAAGA-GTTACCCCTTCTTGAATGTAT-AGGACTG-AAAAAGCAAGACAAAACACTTTAGAAAAA-AAATATA-ATTAAAT---CATCAGT------GCTAACT-TCTTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AAT-CTATGGTTGTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGGTTCTCTAA--CTGT--T-CTAATCGGTGCCACAAA---CTGAAAAAAAA-------GT----T--GACGAATTCTTA-GCTTT-ATAAATT---ACATGACAGAAAAATGATTAAAAATGCAACCA-TTTGTACAATGAAATTGAAG-A-ATTCAAAA-TAAGAAG-CAAA---A---ACATGACGGGAATTAAGAAAAAGTACTGAAAAAA-TGC-CCAGATTATCCAGCCG--TTATGAATTGAAAGGACTGTTACCTT-C-CAAAAATTCTT------GAACA-TGT-TTA--TATTTTCAGTTGAAACATGTGT-----T-GAGTCC-A-AT-AG-TTTTT-TTATCA-AG-TAAAAAA-AAA-TCGCC-GATAAATG-TCA-CAGTTCAACTC--GCGACTGAAG-T----A---A----AACTA-------A-----------ACCATAGGGC-----C-C-GCGGTATCATAGCGAC-GGAGTAtacat
gi|3 : ACATATA--TATTCAAAACCAGAAAATTGGAATGAAA-TGTAAAA-GGAA-CCAATAAACTAATTTTTT---CCAAAA-CTTCGAAAATAAAGTGAT-CCTTT-AACAAGAAGTTACCCTTC-TTGAATGTAT-AGGAATA-AAAA--CAAGACAA--CACTTT-----------TGTA-ACT------------GG------GCTG--------GTTTACGAAATCAGGTTGTGATACCCTTGCTGTTT-ACATTTGAAAT-TGAGGTTCCTAAATC--ATG---GTATCAC-GGTATTGTAAACAAATACAG-GGTGTAGGG-TTTCTAA--C--TTGT-CTAAT-GGTGC--CAAA---CTG-AAAAAAC-------AT---GC--GACGAATTCTTAGGCTTT-ATAAATT---AC--TACAG-AAAATGATT--AAATGCAACCATTGTGTTAAATGAAATGGAAG-ATATCAAAAATTAAGAAGCCAAA---A---ACATGACGGGAATTAAG--AAAGTA-TGAAAAAA-TG--CCAGATTATTCAGTCGTTAT-TGAATT---A-AACTGT-ACCTT---C-AAAATTC-T------GAACA-TGT-TTA--TATTTTCATCTGAAACATGTGT-----T-GAGTGCAA-ATAAG---TTT-TTATCA-AG-T-AAAAAT-AA-TCGCCGGATAAATG-TCACCAGTTC-A-TCGCGC------TG-TA--AA---GTTATAACTA-------A-----------ACCATAGG-------C-C-GAGGTATCATA--GACGGGA
gi|4 : CAAGTTTCATTCC-AAA-CTCCTGCGTAAATACCTTGGATT-TGG-TCTTAT-ATGAAA--TTTTAAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAA-TACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGAAC-CATTTCTTTCACTTCAACTTAGTTCAA-GGTCC-TTC-TG-TTTTGGGTT-TTGTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAACCATATACTTT--ATTTATC--TCCACACACC--AAGAGTC--AAATTGTGCGGTTCCT-ATTTA-CTATTTC-TTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TTCAAAGC-GGGAAAACTTACGTTCATTCAGT--ACAATATGGACGAACGTTTCATtt
gi|5 : TTTCATTTCCAAATCTCCTGCGGAAATACCTTGGATTGTGGGTCT-AT-ATGA----TTT-AAATACCGTATCT-GAA-CATACGAA-TGCGT-AAC-AGAAAT---CCTGGACGGACC-TGCATCAGACTCCATCAATTGA-C-CATT-CTTTCCTTTCAACTTAGTTC-A-AGTCC-TTC-TT-TTT-GGGTT-TGTTC----AATGTTTCATTATAGCAACCGTCACTT-GGCTATCGACGGTT-TTGTTATAAAAC---GTT--C-AT-GA-TTCTTCTTAATCATATACCTTTAATTGATCATTCCACACA-CCTAAGAGTCCAAAATTGTCGGGTTCCTGA--TACCTATTTCTTTACCCTCGACCAAAACGT--AAACCGA--AAG-TAG-ACG--TTG-T--TT--CAGC-G---AAAC-TACG-TCATTCAGTACACAATATGGAAGAAC-TTTCATa
gi|6 : cagtAAGTTTCATTCC-AAA-CTCCTGCGGAAATACCTTGG--T-TGGGTCT-AT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAACTG-GTCAAC-AGAAATAACCT--GACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCCA-AGTCC-TTC-TGTTTT-GGGTT-TGTTC----AATG-TGA-TTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTACAAT-GACTTCTTCTTAAT-ATATACTTT--ATTTA-C-TTACACACA-C--AAGAGTC--AAATTGTGC-GTTCCT-A--TA-CTATTT--CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-T-G-ACCGAGTG-TTGTC--AA-C-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTac
gi|7 : TATTGTA------CACAG-GGTGTATGG-TCT---------------TAAT-GGTGCCACAA----CTGTGAAAAAATTTTGTTATCTCGCTCGACGTATTCTTA-A--TT-ATAAAT--------GATAGAAAAAT---------------TATTTTCTTCAATGAAAT-AAAG-A-ATTCAAAATTATGAAT-TAAA---A----CATGACGGAAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTCTGACGTT--ATAAATTGAAA-GACTGTA-CCTT-C-C-AAAATTC-T------TAACA-TTT-TTA--TATTTTCAGATGAGACAAGCTT-----T-GAGTGC-A-AT-AG--TTTT-TTATTA-TG-TAAAAAATAAA-TCGTC-GATAGATG-TCA-CGGTTC-ACTC--GTGACTTGTG-TA--AAACTA----AATTACCGCG--AT----------ACCATAGGATCCGACC-C-GCGGTATCATAG-GATGGGAGTAtc
gi|8 : aCAGAAAAATGATT-AAAATGCAACCATTTTGTACAGTGAAA-TAAAT-A-ATTCAGAATTAAGAAG-CAAATTCATATACATGACGGGACTTAAG-AAAAGTAATG-AAAAA-TGC-CCAG-TT-TTCAGTCA--TTATAAATTGAAA-GACTGT-ACCTT-C-C-AACAATC-T------GAATA-TTT-TTA--TATTTTCAGCTGAGATAGGCTT-----TAAAGTGT-A-AT-AG--TTTT-TCATCA-TG-TAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTC--GTGACTGATG-TA--AAATCA----AATTACCGCGG-A-----------ACCATAGGAG-----C-C-GCGGTATGATAG-GACGGt
gi|9 : gGAAG-CAAA---A---ACATGACGGGAATCACG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTTGGTCGTTTTA--AATTGAAA-GACTGTA-CCTT-G-C-AAAATTC-T------TAATA-TTT-TTA--TGTTTTCAGTTGAGACAAGCTT-----T-GAGTGC-A-AT-AG--TTTC-TAATCATGG-TAAAAAAGAAATTCGCC-GATAGATG-TCA-TGGTCC-ACTT--GTGACTGATGCTA--AACT-A----AATTACCGCGGTA-----------A-CGTAGGA------CTC-GCGGTATCATAG-GACGGGAGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTAAAGAACTTCATCAGAGTAAGAATAATACATCCATTTTCACACAAAGGA
Unaligned ( gi|18 ): TAACGTTGGCTCATAGCTTATGCCATACATGATCAAATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 11 22 1 1 1 1 1 1 11 333333333333333333333333333333333333333333333333333 1 1 2222222222222 11 55555555555555 1111 5555555555555555 1111 22222222 22 1111111 1 111 11 111111 11111 22 22 555555555555555555555 222222 1 1 1 1 1 111 1 1 1 1 1 11 111 1 1111 1 111 11 1111 11 111 111 11 11 11 11 111 11
lowQualScore : 1 88 3 3 3 7 3 88 7 7 0 00 3 3 3 3 3 3 7 88 7 666666666666666666666666666666666666666666666666666 7 7 3 3 6666666666666 6 0 88 8 8 44444444444444 8 4444 8 8888888888888888 6666 88888888 99 7 22 6 6 5 1111111 77 0 5 5 9 0 111 2 5 66 777 4 4 222222 5 5 66 0 1 22222 5 5 5 5 00 2 5 66 00 5 5 0 5 5 5 66 5 000000000000000000000 7 111111 8 4 4 3 5 0 3 0 2 5 0 777 0 0 0 2 0 0 2 8 0 00 0 8 8 8 8 8 777 6 6 6 3 6 4444 0 3 8 0 8 5 0 5 1 8 444 0 8 8 5 0 11 0 5 88 2222 11 8 111 8 333 88 777 11 8 0 8 11 8 11 11 8 444 88 5 8 44
lowQualScore : . .. . . . . . .. . . . .. . . . . . . . .. . ................................................... . . . . ............. . . .. . . .............. . .... . ................ .... ........ .. . .. . . . ....... .. . . . . . ... . . .. ... . . ...... . . .. . . ..... . . . . .. . . .. .. . . . . . . .. . ..................... . ...... . . . . . . . . . . . ... . . . . . . . . . .. . . . . . . ... . . . . . .... . . . . . . . . . . ... . . . . . .. . . .. .... .. . ... . ... .. ... .. . . . .. . .. .. . ... .. . . ..
lowQualScore : 0 33 3 3 3 3 3 33 3 3 7 77 3 3 3 3 3 3 3 33 3 333333333333333333333333333333333333333333333333333 3 3 3 3 0000000000000 7 8 00 0 0 66666666666666 0 8888 8 5555555555555555 5555 22222222 88 3 77 7 7 7 0000000 11 7 7 7 4 0 999 0 0 88 222 4 4 888888 0 0 99 1 0 55555 0 0 0 0 55 2 0 00 55 0 0 2 0 0 0 22 0 888888888888888888888 2 777777 9 4 4 2 0 0 2 0 5 5 0 000 0 0 0 5 0 0 5 0 8 88 8 0 0 0 0 0 444 7 7 7 3 7 2222 8 5 0 8 0 0 8 0 0 0 000 8 0 0 0 8 00 6 6 88 2222 00 0 888 0 888 88 222 00 0 8 0 00 0 00 00 0 000 88 0 0 00
consensus : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTA-TAGGACT-GAAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C---GTTTACGAAATCAGATTGTGATACCCTTGCTG-TTTACATTTG-AAAATGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCT--AAC--T--TCTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GC-TTTATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTG-AAAAAATGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AG-TTTTTTTATC-A-NGTAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTCG-GCGACTGATG-TAAA---A----AACTACCGC-GA-ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAA--ATTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TT-CTG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-A-TGACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
Reference ( family-1457 ) : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTA-TAGGACT-GAAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C--TGTTTACGAAATCAGATTGTGATACCCTTGCTG-TTTACATTTG-AAAATGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCT--AAC--T--TCTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GC-TTTATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTG-AAAAAATGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AG-TTTTTTTATC-A-NGTAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTCG-GCGACTGATG-TAAA---A----AACTACCGC-GA-ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAA--ATTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TT-CTG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-A-TGACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
gi|1 : ACAAATAATTATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAATAACCTTGAAAATAAAG--ATGCCTTT-AACAAGA-GTTACCTCTT-ATGAATGTATTAGGACTGGAAAAAGCAAGACAA--CAC-TTAGGAAAGCAA-TATAGAATAA-TTTGCAGCAGGAAAAAAGC--ACTAC------TAGGCAA--AGA-------ACTCTTGCTGTTTTACATTTGAAAAATGAGGTTCCT--ATCCTAAGA--GTATCACGGGTATTGTAAAA-AAAACAGCGGTGTAGGT-TCTCTAAAACG-T--GCTAAT-GGTGCCACAAA---CTGAAAAAAAA-------AT---G---GACGAATTCTTA-GCTTTTACAAATTTACAT--GACAGAAAAATGATT-AAAATGCAACCA-TTTGTACAATAAAA--GAAGTA-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAAATGCGCCAGATT-TTCAGGCGTTTTATGAATTG-AA-GACTGTAACCCT-CAC-AAAATTC-T------GAACAGTTTATTA--TA-TTTCAGTTGGAACATGTGT-----T-GAGTGC-C-AT-AGTTTTTTTTATCAA-GGTAAAAAATAAA-TCG-C-GATA-ATGTTCA-CAGTTC-ACTCG-GCGACTGAAG-TAAA---A----AACTA-----AA-AC--TAGGA------C-C-GCGGTAT-ATAG-GACGGGAGTAATTATATCCAAG-TTCATTCCCACA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTATCATGAAAGATTT-AAATAC-GTACCTCGAAGCATACGAA-TG-GTCAACTAGAAATA-CCCTGGACGAGCTGTGCATCAGACTCCATC-ATTGG-CACATT-CTTTCACTTCAACTTAGTTCAGTAATCC-TTCCTG-TTT-GGGTT-TGTTTTTCAAATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAACAGTGTTTAC-ATTGGGTTCTTCTAATTCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A---A-CTATT---CTA-CATCGACCAGAACG-TAAAACCGACCAAGTTAGAACC--GTG-T--TC--AAGC-G---AAAT-TA-G-TCATTCAGTA-ACAATATGAACGAACGTTTCATT
gi|10 : a-TT-CTA-TTTTGGGTTGTGTTC----AATGTTGATATGCGGC-ACCG-CATTTCGACCATCAAAGG--------------C---GTTTAC-A-TGACTTCTTCTCAATCAT---------------T-TTCCAAACA-T--AAGAGTT--AAATTGTGCGATTCCT-A--TA-CTTTTTC-CT--CCTAGACTAAAACGTT-AAACCGA--AAG-TAG-ACC--GTGTT--TC--AAGCAG---AAAC--AAG-TCACTTAGTT-ATAATATGGACGAACGTTACATTac
gi|11 : gagcactttttcaagGATT-TTCACTTGTT--ATAAATTAGAA-GGATATA--CTTAC-C-AAAATTC-C------GGACA-TCT-TTAACTGTTTT--GTTGTGACAAAATTAATGTC-GCGTGT-ATAT-AG-TTGTTT-ATT-A-TCTAAAAA-TAAC-TCGCT-GATAGATG-TCG-CGGTTA-ACTC--GTAACGTATG--AAA---ATCCGAAATACCTC-GGTACCGTAGGA------C-CTGCGGTACCATAG-GACGGGAGT
gi|12 : tgATCTA-C-C-AAAATTC-TTTAAAAAAAAA-TTT-TT-------TTCAGTTGAGACAGGCTT-----T-CAGTGC-A-AT-A--TTTTTTTCTC-A-TGTACAAATTAAA-TCCCC-GATAGATG-TCA-CGGTTC-ACTCG--TGACTGATG-TGAA---A------CTA------A-ACT-----A------C-C-GCGGTATCATAG-
gi|13 : ctgcATA---AT--GACAGAAACATGATT-AAAATGCAACCATTTTGTACAATGAAA-TAAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATG---------------AAATACTG-AAAAAATGT-CCAGA-T-TTCAGTCGCTATATG--TTGAAA-GACT-CCATCTT-C-C-AAAATTC-T------ataagtaatggataataatacgggacggtaatcaaatacatgtat
gi|14 : AAC-AGAAATACCCCTGGACGGACC-TGCATCATACTCCATC-ATTGG-C-CATT-CTTTCACTTCAACTTAGTTC-A-AGTCCNNN-NNN-NNN-NNNNN-NNNNN----NNNNNNGATTTAta
gi|15 : TAAA--AATACAG-GGTGTAGGG-TC--------------CTAAT-GGTGCCACAAAGTTCTGTGAAAAga
gi|17 : cagtttattgcctaaaa-ACCATAGGA------CGT-GGGGTATCATAG-GATGGGAGTAttttttgttatctcgtttgatgtatttttagatat
gi|2 : A--TATTCAAA-CCA-AAAAATTGAATGAAAATTTAAAAAGGAAACACATAA--TATTTTTTTTTCCCAAAAAACTTGAAAATAAAGT-AT-CCTTTTAACAAGA-GTTACCCCTTCTTGAATGTA-TAGGACT-GAAAAAGCAAGACAAAACACTTTAGAAAAA-AAATATA-ATTAAAT---CATCAGT------GCTAACT-TCTTGTTTACGAAATCAGATTGTGATACCCTTGCTG-TTTACATTTG-AAAATGAGGTTCCT-AAT-CTATGGTTGTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGGTTCTCT--AACTGT--TCTAATCGGTGCCACAAA---CTGAAAAAAAA-------GT----T--GACGAATTCTTA-GC-TTTATAAATT---ACATGACAGAAAAATGATTAAAAATGCAACCA-TTTGTACAATGAAATTGAAG-A-ATTCAAAA-TAAGAAG-CAAA---A---ACATGACGGGAATTAAGAAAAAGTACTG-AAAAAATGC-CCAGATTATCCAGCCG--TTATGAATTGAAAGGACTGTTACCTT-C-CAAAAATTCTT------GAACA-TGT-TTA--TATTTTCAGTTGAAACATGTGT-----T-GAGTCC-A-AT-AG-TTTTTTTATC-A-AGTAAAAAA-AAA-TCGCC-GATAAATG-TCA-CAGTTCAACTC--GCGACTGAAG-T--A---A----AACTA------A-ACCATAGGGC-----C-C-GCGGTATCATAGCGAC-GGAGTAtacat
gi|3 : ACATATA--TATTCAAAACCAGAAAATTGGAATGAAA-TGTAAAA-GGAA-CCAATAAACTAATTTTTT---CCAAAA-CTTCGAAAATAAAGTGAT-CCTTT-AACAAGAAGTTACCCTTC-TTGAATGTA-TAGGAAT-AAAAA--CAAGACAA--CACTTT-----------TGTA-ACT------------GG------GCTG--------GTTTACGAAATCAGGTTGTGATACCCTTGCTG-TTTACATTTG-AAATTGAGGTTCCTAAATC--AT-G--GTATCAC-GGTATTGTAAACAAATACAG-GGTGTAGGG-TTTCT--AAC--TTGTCTAAT-GGTGC--CAAA---CTG-AAAAAAC-------AT---GC--GACGAATTCTTAGGC-TTTATAAATT---AC--TACAG-AAAATGATT--AAATGCAACCATTGTGTTAAATGAAATGGAAG-ATATCAAAAATTAAGAAGCCAAA---A---ACATGACGGGAATTAAG--AAAGTA-TG-AAAAAATG--CCAGATTATTCAGTCGTTAT-TGAATT---A-AACTGT-ACCTT---C-AAAATTC-T------GAACA-TGT-TTA--TATTTTCATCTGAAACATGTGT-----T-GAGTGCAA-ATAAG---TTTTTATC-A-AGT-AAAAAT-AA-TCGCCGGATAAATG-TCACCAGTTC-A-TCGCGC------TG-TAAA---GTTATAACTA------A-ACCATAGG-------C-C-GAGGTATCATA--GACGGGA
gi|4 : CAAGTTTCATTCC-AAA-CTCCTGCGTAAATACCTTGGATT-TGG-TCTTAT-ATGAA--ATTTTAAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAA-TACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGAAC-CATTTCTTTCACTTCAACTTAGTTCAA-GGTCC-TT-CTG-TTTTGGGTT-TTGTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTAC-A-TGACTTCTTCTTAACCATATACTTT--ATTTATC--TCCACACACC--AAGAGTC--AAATTGTGCGGTTCCT-ATTTA-CTATTTC-TTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TTCAAAGC-GGGAAAACTTACGTTCATTCAGT--ACAATATGGACGAACGTTTCATtt
gi|5 : TTTCATTTCCAAATCTCCTGCGGAAATACCTTGGATTGTGGGTCT-AT-ATGA----TTT-AAATACCGTATCT-GAA-CATACGAA-TGCGT-AAC-AGAAAT---CCTGGACGGACC-TGCATCAGACTCCATCAATTGA-C-CATT-CTTTCCTTTCAACTTAGTTC-A-AGTCC-TT-CTT-TTT-GGGTT-TGTTC----AATGTTTCATTATAGCAACCGTCACTT-GGCTATCGACGGTT-TTGTTATAAAAC---GTT--C-A-TGA-TTCTTCTTAATCATATACCTTTAATTGATCATTCCACACA-CCTAAGAGTCCAAAATTGTCGGGTTCCTGA--TACCTATTTCTTTACCCTCGACCAAAACGT--AAACCGA--AAG-TAG-ACG--TTG-T--TT--CAGC-G---AAAC-TACG-TCATTCAGTACACAATATGGAAGAAC-TTTCATa
gi|6 : cagtAAGTTTCATTCC-AAA-CTCCTGCGGAAATACCTTGG--T-TGGGTCT-AT-ATGAA--ATTT-AAATAC-GTACCT-GAAGCATACGAACTG-GTCAAC-AGAAATAACCT--GACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCCA-AGTCC-TT-CTGTTTT-GGGTT-TGTTC----AATG-TGA-TTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTACAA-TGACTTCTTCTTAAT-ATATACTTT--ATTTA-C-TTACACACA-C--AAGAGTC--AAATTGTGC-GTTCCT-A--TA-CTATTT--CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-T-G-ACCGAGTG-TTGTC--AA-C-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTac
gi|7 : TATTGTA------CACAG-GGTGTATGG-TCT--------------TAAT-GGTGCCACAA----CTGTGAAAAAATTTTGTTATCTCGCTCGACGTATTCTTA-A---TTATAAAT--------GATAGAAAAAT---------------TATTTTCTTCAATGAAAT-AAAG-A-ATTCAAAATTATGAAT-TAAA---A----CATGACGGAAATTAAG-AAAAGTACTG-AAAAAATGC-CCAG-TT-TTCTGACGTT--ATAAATTGAAA-GACTGTA-CCTT-C-C-AAAATTC-T------TAACA-TTT-TTA--TATTTTCAGATGAGACAAGCTT-----T-GAGTGC-A-AT-AG--TTTTTTATT-A-TGTAAAAAATAAA-TCGTC-GATAGATG-TCA-CGGTTC-ACTC--GTGACTTGTG-TAAAACTA----AATTACCGC-GATACCATAGGATCCGACC-C-GCGGTATCATAG-GATGGGAGTAtc
gi|8 : aCAGAAAAATGATT-AAAATGCAACCATTTTGTACAGTGAAA-TAAAT-A-ATTCAGAATTAAGAAG-CAAATTCATATACATGACGGGACTTAAG-AAAAGTAATG--AAAAATGC-CCAG-TT-TTCAGTCA--TTATAAATTGAAA-GACTGT-ACCTT-C-C-AACAATC-T------GAATA-TTT-TTA--TATTTTCAGCTGAGATAGGCTT-----TAAAGTGT-A-AT-AG--TTTTTCATC-A-TGTAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTC--GTGACTGATG-TAAAATCA----AATTACCGCGGA-ACCATAGGAG-----C-C-GCGGTATGATAG-GACGGt
gi|9 : gGAAG-CAAA---A---ACATGACGGGAATCACG-AAAAGTACTG-AAAAAATGC-CCAG-TT-TTTGGTCGTTTTA--AATTGAAA-GACTGTA-CCTT-G-C-AAAATTC-T------TAATA-TTT-TTA--TGTTTTCAGTTGAGACAAGCTT-----T-GAGTGC-A-AT-AG--TTTCTAATC-ATGGTAAAAAAGAAATTCGCC-GATAGATG-TCA-TGGTCC-ACTT--GTGACTGATGCTAAACT-A----AATTACCGC-GGTAACGTAGGA------CTC-GCGGTATCATAG-GACGGGAGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTAAAGAACTTCATCAGAGTAAGAATAATACATCCATTTTCACACAAAGGA
Unaligned ( gi|18 ): TAACGTTGGCTCATAGCTTATGCCATACATGATCAAATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 11 22 1 1 1 1 1 1 11 44444444444444444444444444444444444444444444444444444 1 1 2222222222222 11 555555555555555 1111 5555555555555555 1 1 22222222 22 1111111 1 111 11 111111 11111 1 22 555555555555555555555 222222 1 1 1 1 1 1111 1 1 1 1 1 111 1 1111 1 111 11 1111 11 111 111 11 11 11 11 111 11
lowQualScore : 1 88 3 3 3 7 3 88 7 7 0 00 3 3 3 3 3 3 7 88 00000000000000000000000000000000000000000000000000000 7 7 3 3 6666666666666 6 0 88 8 8 444444444444444 8 4444 8 8888888888888888 0 2 0 88888888 99 22 6 6 5 1111111 77 0 5 5 9 0 111 5 66 777 4 4 222222 5 5 66 1 22222 5 5 5 5 5 77 66 5 00 5 5 0 5 5 5 66 5 000000000000000000000 7 111111 8 4 4 3 5 0 3 0 2 5 0 4444 0 0 0 2 0 0 2 8 0 0 44 8 8 8 8 8 777 6 6 6 3 6 4444 0 3 8 0 8 5 0 5 1 8 444 0 8 8 5 0 11 0 5 88 2222 11 8 111 8 333 88 777 11 8 0 8 11 8 11 11 8 444 88 5 8 44
lowQualScore : . .. . . . . . .. . . . .. . . . . . . . .. ..................................................... . . . . ............. . . .. . . ............... . .... . ................ . . . ........ .. .. . . . ....... .. . . . . . ... . .. ... . . ...... . . .. . ..... . . . . . .. .. . .. . . . . . . .. . ..................... . ...... . . . . . . . . . . . .... . . . . . . . . . . .. . . . . . ... . . . . . .... . . . . . . . . . . ... . . . . . .. . . .. .... .. . ... . ... .. ... .. . . . .. . .. .. . ... .. . . ..
lowQualScore : 0 33 3 3 3 3 3 33 3 3 7 77 3 3 3 3 3 3 3 33 00000000000000000000000000000000000000000000000000000 3 3 3 3 0000000000000 7 8 00 0 0 666666666666666 0 8888 8 5555555555555555 0 5 0 22222222 88 77 7 7 7 0000000 11 7 7 7 4 0 999 0 88 222 4 4 888888 0 0 99 0 55555 0 0 0 0 5 22 00 0 55 0 0 2 0 0 0 22 0 888888888888888888888 2 777777 9 4 4 2 0 0 2 0 5 5 0 0000 0 0 0 5 0 0 5 0 8 8 00 0 0 0 0 0 444 7 7 7 3 7 2222 8 5 0 8 0 0 8 0 0 0 000 8 0 0 0 8 00 6 6 88 2222 00 0 888 0 888 88 222 00 0 8 0 00 0 00 00 0 000 88 0 0 00
consensus : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C---GTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA--C--T--T-CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTTT-ATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGT-CA-CGGTTC-ACTCG-GCGACTGATG-TAAA---A----AACTACCGC-GA-ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
Reference ( family-1457 ) : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C---GTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA--C--T--T-CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTTT-ATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGT-CA-CGGTTC-ACTCG-GCGACTGATG-TAAA---A----AACTACCGC-GA-ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
gi|1 : ACAAATAATTATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAATAACCTTGAAAATAAAG--ATGCCTTT-AACAAGA-GTTACCTCTT-ATGAATGTATTAGGACTGGAAAAAGCAAGACAA--CACTT-AGGAAAGCAA-TATAGAATAA-TTTGCAGCAGGAAAAAAGC--ACTAC------TAGGCAA--AGA-------ACTCTTGCTGTTTTACATTTGAAAAATGAGGTTCCT-A-TCCTAAGA--GTATCACGGGTATTGTAAAA-AAAACAGCGGTGTAGGT-TCTCTAAAAC--G--TGCTAAT-GGTGCCACAAA---CTGAAAAAAAA-------AT---G---GACGAATTCTTA-GCTTTTACAAATTTACAT--GACAGAAAAATGATT-AAAATGCAACCATTT-GTACAATAAAA--GAAGTA-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAAATGCGCCAGATT-TTCAGGCGTTTTATGAATTGAA--GACTGTAACCCT-CAC-AAAATTC-T------GAACAGTTTATTA--TATTT-CAGTTGGAACATGTGT-----T-GAGTGC-C-AT-AGTTTTTTTTATCA-AGGTAAAAAATAAA-TCGC--GATA-ATGTTCA-CAGTTC-ACTCG-GCGACTGAAG-TAAA---A----AACTA-----AA-AC--TAGGA------C-C-GCGGTAT-ATAG-GACGGGAGTAATTATATCCAAGTT-CATTCCCACA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTATCATGAAAGATTT-AAATAC-GTACCTCGAAGCATACGAA-TG-GTCAACTAGAAATACCC-TGGACGAGCTGTGCATCAGACTCCATC-ATTGG-CACATT-CTTTCACTTCAACTTAGTTCAGTAATCC-TTCCTG-TTT-GGGTT-TGTTTTTCAAATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAACAGTGTTTAC-ATTGGGTTCTTCTAATTCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A---A-CTATT---CTA-CATCGACCAGAACG-TAAAACCGACCAAGTTAGAACC--GTG-T--TC--AAGC-G---AAAT-TA-G-TCATTCAGTA-ACAATATGAACGAACGTTTCATT
gi|10 : a-TTC-TA-TTTTGGGTTGTGTTC----AATGTTGATATGCGGC-ACCG-CATTTCGACCATCAAAGG--------------C---GTTTAC-AT-GACTTCTTCTCAATCAT---------------T-TTCCAAACA-T--AAGAGTT--AAATTGTGCGATTCCT-A--TA-CTTTTTC-CT--CCTAGACTAAAACGTT-AAACCGA--AAG-TAG-ACC--GTGTT--TC--AAGCAG---AAAC--AAG-TCACTTAGTT-ATAATATGGACGAACGTTACATTac
gi|11 : gagcactttttcaagGATT-TTCACTTGTT--ATAAATTAGAA-GGATATA--CTTAC-C-AAAATTC-C------GGACA-TCT-TTAACTGTTTT--GTTGTGACAAAATTAATGTC-GCGTGT-ATAT-AGTTGTTT--ATTA-TC-TAAAAA-TAAC-TCGCT-GATAGATGT-CG-CGGTTA-ACTC--GTAACGTATG--AAA---ATCCGAAATACCTC-GGTACCGTAGGA------C-CTGCGGTACCATAG-GACGGGAGT
gi|12 : tgATCTA-C-C-AAAATTC-TTTAAAAAAAAA-TTT-TT-------TTCAGTTGAGACAGGCTT-----T-CAGTGC-A-AT-A-TTTTTTT-CTCA-TG-TACAAATTAAA-TCCCC-GATAGATGT-CA-CGGTTC-ACTCG--TGACTGATG-TGAA---A------CTA------A-ACT-----A------C-C-GCGGTATCATAG-
gi|13 : ctgcATA---AT--GACAGAAACATGATT-AAAATGCAACCATTTTGTACAATGAAA-TAAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATG---------------AAATACTGAAAAAA-TGT-CCAGA-T-TTCAGTCGCTATATG--TTGAAA-GACT-CCATCTT-C-C-AAAATTC-T------ataagtaatggataataatacgggacggtaatcaaatacatgtat
gi|14 : AAC-AGAAATACCCCTGGACGGACC-TGCATCATACTCCATC-ATTGG-C-CATT-CTTTCACTTCAACTTAGTTC-A-AGTCCNNNN-NN-NNN-NNNNN-NNNNN----NNNNNNGATTTAta
gi|15 : TAAA--AATACAG-GGTGTAGGG-TC---------------CTAAT-GGTGCCACAAAGTTCTGTGAAAAga
gi|17 : cagtttattgcctaaaa-ACCATAGGA------CGT-GGGGTATCATAG-GATGGGAGTAttttttgttatctcgtttgatgtatttttagatat
gi|2 : A--TATTCAAA-CCA-AAAAATTGAATGAAAATTTAAAAAGGAAACACATAA--TATTTTTTTTTCCCAAAAAACTTGAAAATAAAGT-AT-CCTTTTAACAAGA-GTTACCCCTTCTTGAATGTAT-AGGACTG-AAAAAGCAAGACAAAACACTTTAGAAAAA-AAATATA-ATTAAAT---CATCAGT------GCTAACT-TCTTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AAT-CTATGGTTGTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGGTTCTCTAA--CTGT--T-CTAATCGGTGCCACAAA---CTGAAAAAAAA-------GT----T--GACGAATTCTTA-GCTTT-ATAAATT---ACATGACAGAAAAATGATTAAAAATGCAACCA-TTTGTACAATGAAATTGAAG-A-ATTCAAAA-TAAGAAG-CAAA---A---ACATGACGGGAATTAAGAAAAAGTACTGAAAAAA-TGC-CCAGATTATCCAGCCG--TTATGAATTGAAAGGACTGTTACCTT-C-CAAAAATTCTT------GAACA-TGT-TTA--TATTTTCAGTTGAAACATGTGT-----T-GAGTCC-A-AT-AGTTTTTTT-ATCA-AG-TAAAAAA-AAA-TCGCC-GATAAATGT-CA-CAGTTCAACTC--GCGACTGAAG-T--A---A----AACTA------A-ACCATAGGGC-----C-C-GCGGTATCATAGCGAC-GGAGTAtacat
gi|3 : ACATATA--TATTCAAAACCAGAAAATTGGAATGAAA-TGTAAAA-GGAA-CCAATAAACTAATTTTTT---CCAAAA-CTTCGAAAATAAAGTGAT-CCTTT-AACAAGAAGTTACCCTTC-TTGAATGTAT-AGGAATA-AAAA--CAAGACAA--CACTTT-----------TGTA-ACT------------GG------GCTG--------GTTTACGAAATCAGGTTGTGATACCCTTGCTGTTT-ACATTTGAAAT-TGAGGTTCCTAAATC--AT-G--GTATCAC-GGTATTGTAAACAAATACAG-GGTGTAGGG-TTTCTAA--C--TTGT-CTAAT-GGTGC--CAAA---CTG-AAAAAAC-------AT---GC--GACGAATTCTTAGGCTTT-ATAAATT---AC--TACAG-AAAATGATT--AAATGCAACCATTGTGTTAAATGAAATGGAAG-ATATCAAAAATTAAGAAGCCAAA---A---ACATGACGGGAATTAAG--AAAGTA-TGAAAAAA-TG--CCAGATTATTCAGTCGTTAT-TGAATT---A-AACTGT-ACCTT---C-AAAATTC-T------GAACA-TGT-TTA--TATTTTCATCTGAAACATGTGT-----T-GAGTGCAA-ATAAG--TTTTT-ATCA-AG-T-AAAAAT-AA-TCGCCGGATAAATGT-CACCAGTTC-A-TCGCGC------TG-TAAA---GTTATAACTA------A-ACCATAGG-------C-C-GAGGTATCATA--GACGGGA
gi|4 : CAAGTTTCATTCC-AAA-CTCCTGCGTAAATACCTTGGATT-TGG-TCTTAT-ATGAAA--TTTTAAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAA-TACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGAAC-CATTTCTTTCACTTCAACTTAGTTCAA-GGTCC-TTC-TG-TTTTGGGTT-TTGTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAACCATATACTTT--ATTTATC--TCCACACACC--AAGAGTC--AAATTGTGCGGTTCCT-ATTTA-CTATTTC-TTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TTCAAAGC-GGGAAAACTTACGTTCATTCAGT--ACAATATGGACGAACGTTTCATtt
gi|5 : TTTCATTTCCAAATCTCCTGCGGAAATACCTTGGATTGTGGGTCT-AT-ATGA----TTT-AAATACCGTATCT-GAA-CATACGAA-TGCGT-AAC-AGAAAT---CCTGGACGGACC-TGCATCAGACTCCATCAATTGA-C-CATT-CTTTCCTTTCAACTTAGTTC-A-AGTCC-TTC-TT-TTT-GGGTT-TGTTC----AATGTTTCATTATAGCAACCGTCACTT-GGCTATCGACGGTT-TTGTTATAAAAC---GTT--C-AT-GA-TTCTTCTTAATCATATACCTTTAATTGATCATTCCACACA-CCTAAGAGTCCAAAATTGTCGGGTTCCTGA--TACCTATTTCTTTACCCTCGACCAAAACGT--AAACCGA--AAG-TAG-ACG--TTG-T--TT--CAGC-G---AAAC-TACG-TCATTCAGTACACAATATGGAAGAAC-TTTCATa
gi|6 : cagtAAGTTTCATTCC-AAA-CTCCTGCGGAAATACCTTGG--T-TGGGTCT-AT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAACTG-GTCAAC-AGAAATAACCT--GACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCCA-AGTCC-TTC-TGTTTT-GGGTT-TGTTC----AATG-TGA-TTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTACAAT-GACTTCTTCTTAAT-ATATACTTT--ATTTA-C-TTACACACA-C--AAGAGTC--AAATTGTGC-GTTCCT-A--TA-CTATTT--CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-T-G-ACCGAGTG-TTGTC--AA-C-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTac
gi|7 : TATTGTA------CACAG-GGTGTATGG-TCT---------------TAAT-GGTGCCACAA----CTGTGAAAAAATTTTGTTATCTCGCTCGACGTATTCTTA-A--TT-ATAAAT--------GATAGAAAAAT---------------TATTTTCTTCAATGAAAT-AAAG-A-ATTCAAAATTATGAAT-TAAA---A----CATGACGGAAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTCTGACGTT--ATAAATTGAAA-GACTGTA-CCTT-C-C-AAAATTC-T------TAACA-TTT-TTA--TATTTTCAGATGAGACAAGCTT-----T-GAGTGC-A-AT-AG-TTTTTT-ATTA-TG-TAAAAAATAAA-TCGTC-GATAGATGT-CA-CGGTTC-ACTC--GTGACTTGTG-TAAAACTA----AATTACCGC-GATACCATAGGATCCGACC-C-GCGGTATCATAG-GATGGGAGTAtc
gi|8 : aCAGAAAAATGATT-AAAATGCAACCATTTTGTACAGTGAAA-TAAAT-A-ATTCAGAATTAAGAAG-CAAATTCATATACATGACGGGACTTAAG-AAAAGTAATG-AAAAA-TGC-CCAG-TT-TTCAGTCA--TTATAAATTGAAA-GACTGT-ACCTT-C-C-AACAATC-T------GAATA-TTT-TTA--TATTTTCAGCTGAGATAGGCTT-----TAAAGTGT-A-AT-AG-TTTTTC-ATCA-TG-TAAAAAATAAA-TCGCC-GATAGATGT-CA-CGGTTC-ACTC--GTGACTGATG-TAAAATCA----AATTACCGCGGA-ACCATAGGAG-----C-C-GCGGTATGATAG-GACGGt
gi|9 : gGAAG-CAAA---A---ACATGACGGGAATCACG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTTGGTCGTTTTA--AATTGAAA-GACTGTA-CCTT-G-C-AAAATTC-T------TAATA-TTT-TTA--TGTTTTCAGTTGAGACAAGCTT-----T-GAGTGC-A-AT-AG-TTTCTA-ATCATGG-TAAAAAAGAAATTCGCC-GATAGATGT-CA-TGGTCC-ACTT--GTGACTGATGCTAAACT-A----AATTACCGC-GGTAACGTAGGA------CTC-GCGGTATCATAG-GACGGGAGTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTAAAGAACTTCATCAGAGTAAGAATAATACATCCATTTTCACACAAAGGA
Unaligned ( gi|18 ): TAACGTTGGCTCATAGCTTATGCCATACATGATCAAATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 11 22 1 1 1 1 1 1 11 44444444444444444444444444444444444444444444444444444 1 1 2222222222222 11 555555555555555 1111 5555555555555555 1 1 22222222 22 1111111 1 111 11 111111 11111 1 22 555555555555555555555 222222 1 1 1 1 1 1111 1 1 1 1 1 111 1 1111 1 111 11 1111 11 111 111 11 11 11 11 111 11
lowQualScore : 1 88 3 3 3 7 3 88 7 7 0 00 3 3 3 3 3 3 7 88 00000000000000000000000000000000000000000000000000000 7 7 3 3 6666666666666 6 0 88 8 8 444444444444444 8 4444 8 8888888888888888 0 2 0 88888888 99 22 6 6 5 1111111 77 0 5 5 9 0 111 5 66 777 4 4 222222 5 5 66 1 22222 5 5 5 5 5 77 66 5 00 5 5 0 5 5 5 66 5 000000000000000000000 7 111111 8 4 4 3 5 0 3 0 2 5 0 4444 0 0 0 2 0 0 2 8 0 0 44 8 8 8 8 8 777 6 6 6 3 6 4444 0 3 8 0 8 5 0 5 1 8 444 0 8 8 5 0 11 0 5 88 2222 11 8 111 8 333 88 777 11 8 0 8 11 8 11 11 8 444 88 5 8 44
lowQualScore : . .. . . . . . .. . . . .. . . . . . . . .. ..................................................... . . . . ............. . . .. . . ............... . .... . ................ . . . ........ .. .. . . . ....... .. . . . . . ... . .. ... . . ...... . . .. . ..... . . . . . .. .. . .. . . . . . . .. . ..................... . ...... . . . . . . . . . . . .... . . . . . . . . . . .. . . . . . ... . . . . . .... . . . . . . . . . . ... . . . . . .. . . .. .... .. . ... . ... .. ... .. . . . .. . .. .. . ... .. . . ..
lowQualScore : 0 33 3 3 3 3 3 33 3 3 7 77 3 3 3 3 3 3 3 33 00000000000000000000000000000000000000000000000000000 3 3 3 3 0000000000000 7 8 00 0 0 666666666666666 0 8888 8 5555555555555555 0 5 0 22222222 88 77 7 7 7 0000000 11 7 7 7 4 0 999 0 88 222 4 4 888888 0 0 99 0 55555 0 0 0 0 5 22 00 0 55 0 0 2 0 0 0 22 0 888888888888888888888 2 777777 9 4 4 2 0 0 2 0 5 5 0 0000 0 0 0 5 0 0 5 0 8 8 00 0 0 0 0 0 444 7 7 7 3 7 2222 8 5 0 8 0 0 8 0 0 0 000 8 0 0 0 8 00 6 6 88 2222 00 0 888 0 888 88 222 00 0 8 0 00 0 00 00 0 000 88 0 0 00
consensus : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C---GTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA--C--T--T-CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTTT-ATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGT-CA-CGGTTC-ACTCG-GCGACTGATG-TAAA---A----AACTACCGC-GA-ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
Reference ( family-1457 ) : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C---GTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA--C--T--T-CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTTT-ATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGT-CA-CGGTTC-ACTCG-GCGACTGATG-TAAA---A----AACTACCGC-GA-ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
gi|1 : ACAAATAATTATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAATAACCTTGAAAATAAAG--ATGCCTTT-AACAAGA-GTTACCTCTT-ATGAATGTATTAGGACTGGAAAAAGCAAGACAA--CACTT-AGGAAAGCAA-TATAGAATAA-TTTGCAGCAGGAAAAAAGC--ACTAC------TAGGCAA--AGA-------ACTCTTGCTGTTTTACATTTGAAAAATGAGGTTCCT-A-TCCTAAGA--GTATCACGGGTATTGTAAAA-AAAACAGCGGTGTAGGT-TCTCTAAAAC--G--TGCTAAT-GGTGCCACAAA---CTGAAAAAAAA-------AT---G---GACGAATTCTTA-GCTTTTACAAATTTACAT--GACAGAAAAATGATT-AAAATGCAACCATTT-GTACAATAAAA--GAAGTA-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAAATGCGCCAGATT-TTCAGGCGTTTTATGAATTGAA--GACTGTAACCCT-CAC-AAAATTC-T------GAACAGTTTATTA--TATTT-CAGTTGGAACATGTGT-----T-GAGTGC-C-AT-AGTTTTTTTTATCA-AGGTAAAAAATAAA-TCGC--GATA-ATGTTCA-CAGTTC-ACTCG-GCGACTGAAG-TAAA---A----AACTA-----AA-AC--TAGGA------C-C-GCGGTAT-ATAG-GACGGGAGTAATTATATCCAAGTT-CATTCCCACA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTATCATGAAAGATTT-AAATAC-GTACCTCGAAGCATACGAA-TG-GTCAACTAGAAATACCC-TGGACGAGCTGTGCATCAGACTCCATC-ATTGG-CACATT-CTTTCACTTCAACTTAGTTCAGTAATCC-TTCCTG-TTT-GGGTT-TGTTTTTCAAATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAACAGTGTTTAC-ATTGGGTTCTTCTAATTCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A---A-CTATT---CTA-CATCGACCAGAACG-TAAAACCGACCAAGTTAGAACC--GTG-T--TC--AAGC-G---AAAT-TA-G-TCATTCAGTA-ACAATATGAACGAACGTTTCATT
gi|10 : a-TTC-TA-TTTTGGGTTGTGTTC----AATGTTGATATGCGGC-ACCG-CATTTCGACCATCAAAGG--------------C---GTTTAC-AT-GACTTCTTCTCAATCAT---------------T-TTCCAAACA-T--AAGAGTT--AAATTGTGCGATTCCT-A--TA-CTTTTTC-CT--CCTAGACTAAAACGTT-AAACCGA--AAG-TAG-ACC--GTGTT--TC--AAGCAG---AAAC--AAG-TCACTTAGTT-ATAATATGGACGAACGTTACATTac
gi|11 : gagcactttttcaagGATT-TTCACTTGTT--ATAAATTAGAA-GGATATA--CTTAC-C-AAAATTC-C------GGACA-TCT-TTAACTGTTTT--GTTGTGACAAAATTAATGTC-GCGTGT-ATAT-AGTTGTTT--ATTA-TC-TAAAAA-TAAC-TCGCT-GATAGATGT-CG-CGGTTA-ACTC--GTAACGTATG--AAA---ATCCGAAATACCTC-GGTACCGTAGGA------C-CTGCGGTACCATAG-GACGGGAGT
gi|12 : tgATCTA-C-C-AAAATTC-TTTAAAAAAAAA-TTT-TT-------TTCAGTTGAGACAGGCTT-----T-CAGTGC-A-AT-A-TTTTTTT-CTCA-TG-TACAAATTAAA-TCCCC-GATAGATGT-CA-CGGTTC-ACTCG--TGACTGATG-TGAA---A------CTA------A-ACT-----A------C-C-GCGGTATCATAG-
gi|13 : ctgcATA---AT--GACAGAAACATGATT-AAAATGCAACCATTTTGTACAATGAAA-TAAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATG---------------AAATACTGAAAAAA-TGT-CCAGA-T-TTCAGTCGCTATATG--TTGAAA-GACT-CCATCTT-C-C-AAAATTC-T------ataagtaatggataataatacgggacggtaatcaaatacatgtat
gi|14 : AAC-AGAAATACCCCTGGACGGACC-TGCATCATACTCCATC-ATTGG-C-CATT-CTTTCACTTCAACTTAGTTC-A-AGTCCNNNN-NN-NNN-NNNNN-NNNNN----NNNNNNGATTTAta
gi|15 : TAAA--AATACAG-GGTGTAGGG-TC---------------CTAAT-GGTGCCACAAAGTTCTGTGAAAAga
gi|17 : cagtttattgcctaaaa-ACCATAGGA------CGT-GGGGTATCATAG-GATGGGAGTAttttttgttatctcgtttgatgtatttttagatat
gi|2 : A--TATTCAAA-CCA-AAAAATTGAATGAAAATTTAAAAAGGAAACACATAA--TATTTTTTTTTCCCAAAAAACTTGAAAATAAAGT-AT-CCTTTTAACAAGA-GTTACCCCTTCTTGAATGTAT-AGGACTG-AAAAAGCAAGACAAAACACTTTAGAAAAA-AAATATA-ATTAAAT---CATCAGT------GCTAACT-TCTTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AAT-CTATGGTTGTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGGTTCTCTAA--CTGT--T-CTAATCGGTGCCACAAA---CTGAAAAAAAA-------GT----T--GACGAATTCTTA-GCTTT-ATAAATT---ACATGACAGAAAAATGATTAAAAATGCAACCA-TTTGTACAATGAAATTGAAG-A-ATTCAAAA-TAAGAAG-CAAA---A---ACATGACGGGAATTAAGAAAAAGTACTGAAAAAA-TGC-CCAGATTATCCAGCCG--TTATGAATTGAAAGGACTGTTACCTT-C-CAAAAATTCTT------GAACA-TGT-TTA--TATTTTCAGTTGAAACATGTGT-----T-GAGTCC-A-AT-AGTTTTTTT-ATCA-AG-TAAAAAA-AAA-TCGCC-GATAAATGT-CA-CAGTTCAACTC--GCGACTGAAG-T--A---A----AACTA------A-ACCATAGGGC-----C-C-GCGGTATCATAGCGAC-GGAGTAtacat
gi|3 : ACATATA--TATTCAAAACCAGAAAATTGGAATGAAA-TGTAAAA-GGAA-CCAATAAACTAATTTTTT---CCAAAA-CTTCGAAAATAAAGTGAT-CCTTT-AACAAGAAGTTACCCTTC-TTGAATGTAT-AGGAATA-AAAA--CAAGACAA--CACTTT-----------TGTA-ACT------------GG------GCTG--------GTTTACGAAATCAGGTTGTGATACCCTTGCTGTTT-ACATTTGAAAT-TGAGGTTCCTAAATC--AT-G--GTATCAC-GGTATTGTAAACAAATACAG-GGTGTAGGG-TTTCTAA--C--TTGT-CTAAT-GGTGC--CAAA---CTG-AAAAAAC-------AT---GC--GACGAATTCTTAGGCTTT-ATAAATT---AC--TACAG-AAAATGATT--AAATGCAACCATTGTGTTAAATGAAATGGAAG-ATATCAAAAATTAAGAAGCCAAA---A---ACATGACGGGAATTAAG--AAAGTA-TGAAAAAA-TG--CCAGATTATTCAGTCGTTAT-TGAATT---A-AACTGT-ACCTT---C-AAAATTC-T------GAACA-TGT-TTA--TATTTTCATCTGAAACATGTGT-----T-GAGTGCAA-ATAAG--TTTTT-ATCA-AG-T-AAAAAT-AA-TCGCCGGATAAATGT-CACCAGTTC-A-TCGCGC------TG-TAAA---GTTATAACTA------A-ACCATAGG-------C-C-GAGGTATCATA--GACGGGA
gi|4 : CAAGTTTCATTCC-AAA-CTCCTGCGTAAATACCTTGGATT-TGG-TCTTAT-ATGAAA--TTTTAAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAA-TACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGAAC-CATTTCTTTCACTTCAACTTAGTTCAA-GGTCC-TTC-TG-TTTTGGGTT-TTGTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAACCATATACTTT--ATTTATC--TCCACACACC--AAGAGTC--AAATTGTGCGGTTCCT-ATTTA-CTATTTC-TTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TTCAAAGC-GGGAAAACTTACGTTCATTCAGT--ACAATATGGACGAACGTTTCATtt
gi|5 : TTTCATTTCCAAATCTCCTGCGGAAATACCTTGGATTGTGGGTCT-AT-ATGA----TTT-AAATACCGTATCT-GAA-CATACGAA-TGCGT-AAC-AGAAAT---CCTGGACGGACC-TGCATCAGACTCCATCAATTGA-C-CATT-CTTTCCTTTCAACTTAGTTC-A-AGTCC-TTC-TT-TTT-GGGTT-TGTTC----AATGTTTCATTATAGCAACCGTCACTT-GGCTATCGACGGTT-TTGTTATAAAAC---GTT--C-AT-GA-TTCTTCTTAATCATATACCTTTAATTGATCATTCCACACA-CCTAAGAGTCCAAAATTGTCGGGTTCCTGA--TACCTATTTCTTTACCCTCGACCAAAACGT--AAACCGA--AAG-TAG-ACG--TTG-T--TT--CAGC-G---AAAC-TACG-TCATTCAGTACACAATATGGAAGAAC-TTTCATa
gi|6 : cagtAAGTTTCATTCC-AAA-CTCCTGCGGAAATACCTTGG--T-TGGGTCT-AT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAACTG-GTCAAC-AGAAATAACCT--GACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCCA-AGTCC-TTC-TGTTTT-GGGTT-TGTTC----AATG-TGA-TTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTACAAT-GACTTCTTCTTAAT-ATATACTTT--ATTTA-C-TTACACACA-C--AAGAGTC--AAATTGTGC-GTTCCT-A--TA-CTATTT--CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-T-G-ACCGAGTG-TTGTC--AA-C-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTac
gi|7 : TATTGTA------CACAG-GGTGTATGG-TCT---------------TAAT-GGTGCCACAA----CTGTGAAAAAATTTTGTTATCTCGCTCGACGTATTCTTA-A--TT-ATAAAT--------GATAGAAAAAT---------------TATTTTCTTCAATGAAAT-AAAG-A-ATTCAAAATTATGAAT-TAAA---A----CATGACGGAAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTCTGACGTT--ATAAATTGAAA-GACTGTA-CCTT-C-C-AAAATTC-T------TAACA-TTT-TTA--TATTTTCAGATGAGACAAGCTT-----T-GAGTGC-A-AT-AG-TTTTTT-ATTA-TG-TAAAAAATAAA-TCGTC-GATAGATGT-CA-CGGTTC-ACTC--GTGACTTGTG-TAAAACTA----AATTACCGC-GATACCATAGGATCCGACC-C-GCGGTATCATAG-GATGGGAGTAtc
gi|8 : aCAGAAAAATGATT-AAAATGCAACCATTTTGTACAGTGAAA-TAAAT-A-ATTCAGAATTAAGAAG-CAAATTCATATACATGACGGGACTTAAG-AAAAGTAATG-AAAAA-TGC-CCAG-TT-TTCAGTCA--TTATAAATTGAAA-GACTGT-ACCTT-C-C-AACAATC-T------GAATA-TTT-TTA--TATTTTCAGCTGAGATAGGCTT-----TAAAGTGT-A-AT-AG-TTTTTC-ATCA-TG-TAAAAAATAAA-TCGCC-GATAGATGT-CA-CGGTTC-ACTC--GTGACTGATG-TAAAATCA----AATTACCGCGGA-ACCATAGGAG-----C-C-GCGGTATGATAG-GACGGt
gi|9 : gGAAG-CAAA---A---ACATGACGGGAATCACG-AAAAGTACTGAAAAAA-TGC-CCAG-TT-TTTGGTCGTTTTA--AATTGAAA-GACTGTA-CCTT-G-C-AAAATTC-T------TAATA-TTT-TTA--TGTTTTCAGTTGAGACAAGCTT-----T-GAGTGC-A-AT-AG-TTTCTA-ATCATGG-TAAAAAAGAAATTCGCC-GATAGATGT-CA-TGGTCC-ACTT--GTGACTGATGCTAAACT-A----AATTACCGC-GGTAACGTAGGA------CTC-GCGGTATCATAG-GACGGGAGTA
blockSeqs : T . A G A A A AC T A TG . T A C . . A AA TAGAAAAAAAATATAATTAAATCATCAGTGCTAACTTCTTG T T . . AATCTATGGTT G CA . T TCTAACTGTT C AGTT T TTTTGTTATCTCGCTC G C . TACAT AA TT . T C TTCATAT AA . . A A CTA G CA AC A T TTAAAA . . AC A AATGT A A T A T T TG . T G . C A GC C ATCCGAAATACCTCGGT G TCCGAC G T C T C T A G G T . AA T C . G C C C . CT . A A . T AA N . T T G . T A C A G A A . A . C TA T AT CCT CA G TTT C TCT AC TTA . . . GA T TG CA A GGA TT A T AC
blockSeqs : . . . . . . . . . T . . . . . . . . TTGTAACTGGGCTGG T T . . AAATCATG . C . . TCTAACTTGT . A A ATGC . C . AAT A TG . . . A A . . A A TTA . TA C . . . . . . G . . . . . T T T . . . . . . G . ACTAAATTACCGCGAT A C T . . T . . A . G . . AA . . . G . . C . CT . . . . . CA . . . T . . T . . C G T . . . . C . T T CC . . T . TC A TTA . . . . . . . . . T C . T
blockSeqs : . . . T . A T GTT . . . TAC A T . . . A A . . A . TTT . A C . . . . . . T . . . . . T T T . . . . . . . . ATCAAATTACCGCGGA A G . . . T . . . . . . . . . . . . . . . . CT . . . . . A . . . . . . T . . . . A . . . . C . . T T . . T . TC A TT . . . . . . . . . T C . A
blockSeqs : . . . . . . . . . T . . . A A . . A . TT . A C . . . . . . T . . . . . . T A . . . . . . . . CTAAATTACCGCGGT A . . . . . T . . . . . A . . . . . . A . . . . . . . . . . . . . C . . T . T . T . . . . . . . . . . C . .
blockSeqs : . T . . . A . . . . . TT . A C . . . . . . A . . . . . . C A . . . . . . . . GTTATAACTAA A . . . . . . . . . . .
blockSeqs : . A . . . . . T . A C . . . . . . G . . . . . . A T . . . . . . . . AAACTAA A . . . .
blockSeqs : . . T . A G . . . . . . A . . . . . . . T . . . . . . . . ACTAA G . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : C* T************** AC****** A* T* A* C** T* ** ACTAAACTACCCGG******* CT A** **** *** T** TC* TT* **
originalCons : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C---GTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCTCTAA--C--T--T-CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATT---AC--GACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAATTGAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTAACCTT-C-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTTT-ATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGT-CA-CGGTTC-ACTCG-GCGACTGATG-TAAA---A----AACTACCGC-GA-ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCAA-AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
finalCons : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C---GTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TCT--------------CTAAT-GGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAATAC------GACAGAAAAATGATTA-AAATGCAACCATTTTGTACAATGAAAT-GAAG-A-ATTCAAAATTAAGAAG-CAAA---A---ACATGACGGGAATTAAG-AAAAGTACTGAAAAAA-TGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTGTA-CCTTC--C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AGTTTTTTT-ATCA-NG-TAAAAAATAAA-TCGCC-GATAGATGT-CA-CGGTTC-ACTC--GCGACTGATG-TAAAACTAAACTACCCGG-------ACCGTAGGA------C-C-GCGGTATCATAG-GACGGGAGTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAAA--TTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATC-ATTGA-C-CATT-CTTTCACTTCAACTTAGTTCA--AGTCC-TTC-TG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-AT-GACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-AT--A-CTATTTC-CTA-CCTCGACCAAAACGTT-AAACCGA--AAG-TAG-ACC--GTG-T--TC--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTAAAGAACTTCATCAGAGTAAGAATAATACATCCATTTTCACACAAAGGA
Unaligned ( gi|18 ): TAACGTTGGCTCATAGCTTATGCCATACATGATCAAATG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1 1 1 11 22 1 1 1 1 1 1 11 44444444444444444444444444444444444444444444444444444 1 1 2222222222222 11 777777777777777777777777 1111 5555555555555555 1 1 33333333 111 11111 1 1 111111 11111 22 4444444 222222222 1 1 1 1 1 111 1 1 1 1 1 11 11111 1111 1 111 11 1111 11 111 111 1 11 11 1111111 111 11
lowQualScore : 1 88 3 3 3 7 3 88 7 7 0 00 3 3 3 3 3 3 7 88 00000000000000000000000000000000000000000000000000000 7 7 3 3 6666666666666 6 0 88 8 8 555555555555555555555555 4444 8 8888888888888888 0 2 0 77777777 99 222 6 6 5 44444 5 77 0 5 5 9 0 5 2 5 4 4 4 4 4 222222 5 5 66 0 1 22222 5 5 5 5 00 2 5 66 00 5 5 0 5 5 5 5 0 2 5 2 9999999 3 444444444 4 66 1 4 66 4 2 0 5 0 3 0 2 5 0 777 0 0 0 2 0 0 2 8 0 00 0 8 8 8 8 8 6 99 6 6 6 00000 6 6 4444 0 3 8 0 8 5 0 5 1 8 444 0 8 8 5 0 11 0 5 88 2222 11 8 111 8 333 88 0 6 11 8 0 8 11 7777777 8 444 88 5 8 44
lowQualScore : . .. . . . . . .. . . . .. . . . . . . . .. ..................................................... . . . . ............. . . .. . . ........................ .... . ................ . . . ........ .. ... . . . ..... . .. . . . . . . . . . . . . . ...... . . .. . . ..... . . . . .. . . .. .. . . . . . . . . . . . ....... . ......... . .. . . .. . . . . . . . . . . ... . . . . . . . . . .. . . . . . . . .. . . . ..... . . .... . . . . . . . . . . ... . . . . . .. . . .. .... .. . ... . ... .. . . .. . . . .. ....... . ... .. . . ..
lowQualScore : 0 33 3 3 3 3 3 33 3 3 7 77 3 3 3 3 3 3 3 33 00000000000000000000000000000000000000000000000000000 3 3 3 3 0000000000000 7 8 00 0 0 888888888888888888888888 8888 8 5555555555555555 0 5 0 44444444 88 555 7 7 7 33333 7 11 7 7 7 4 0 9 0 0 4 4 4 4 4 888888 0 0 99 1 0 55555 0 0 0 0 55 2 0 00 55 0 0 2 0 0 0 0 1 2 0 2 0000000 4 333333333 4 11 1 4 99 0 5 8 0 0 2 0 5 5 0 000 0 0 0 5 0 0 5 0 8 88 8 0 0 0 0 0 7 22 7 7 7 33333 7 7 2222 8 5 0 8 0 0 8 0 0 0 000 8 0 0 0 8 00 6 6 88 2222 00 0 888 0 888 88 8 0 00 0 8 0 00 4444444 0 000 88 0 0 00
consensus : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C---GTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TC---------TCTAA----T---A-TGGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAA-TT---ATGACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAA-T-GAAG-A-ATTCAAAATTAAGAAG-CAAA-----A-ACATGACGGGAATTAAG-AAAAGTACTG-AAAAAATGC-CCAGATT-TTCAGTCGTT-TATGAATTGAAA-GACTG-T-ACCTTC-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AG-TTTTTTTATC-A-NGTAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTC-GCGACTGATGTAAAACTA-AACTACCGCGGTACCATAGGA------C-C-GCGGT--ATCATAG-GACGGGA--GTAATCANATNCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAA--ATTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATCA-TTGA-C-CATT-CTTTCACTTCAACTTAGTT-CA--AG-TCC-T-T-CTG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-A-TGACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTGT--T-C--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
Reference ( family-1457 ) : NACANATA--TATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAAAAACCTCGAAAATAAAGT-AT-CCTTT-AACAAGA-GTTACCCCTT-TTGAATGTAT-AGGACTG-AAAAAGCAAGACAA--CACTTTAGGAAAG-AA-TATA-ANTAA-T---CA-CAGG------GCTGACT-C---GTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AATCCTATGG--GTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGG-TC---------TCTAA----------TGGTGCCACAAA---CTGNAAAAAAA-------AT---GC--GACGAATTCTTA-GCTTT-ATAAA-T----ACGACAGAAAAATGATT-AAAATGCAACCATTTTGTACAATGAAA-T-GAAG-A-ATTCAAAATTAAGAAG-CAAA-----A-ACATGACGGGAATTAAG-AAAAGTACTG-AAAAAATGC-CCAGATT-TTCAGTCGTTTTATGAATTGAAA-GACTG-T-ACCTTC-C-AAAATTC-T------GAACA-TTT-TTA--TATTTTCAGTTGAGACANGCTT-----T-GAGTGC-A-AT-AG-TTTTTTTATC-A-NGTAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTC-GCGACTGATGTAAAACTA-AACTACC-CGG-ACCGTAGGA------C-C-GCGGT--ATCATAG-GACGGGA--GTAATTATATCCAAGTTTCATTCCCAAA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTAT-ATGAA--ATTT-AAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAAATACCCCTGGACGGACC-TGCATCAGACTCCATCA-TTGA-C-CATT-CTTTCACTTCAACTTAGTT-CA--AG-TCC-T-T-CTG-TTT-GGGTT-TGTTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAAC---GTTTAC-A-TGACTTCTTCTTAATCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A--TA-CTATTTC-CTA-CCTCGACCAAAACGTT-AAACCGA--AAG-TAG-ACC--GTGT--T-C--AAGC-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTCATT
gi|1 : ACAAATAATTATTCAAA-CCA-AAAATTTGAATGAAA-TTTAAAAAGGAA-CACATAA--TAATTTTTTTTCCCAATAACCTTGAAAATAAAG--ATGCCTTT-AACAAGA-GTTACCTCTT-ATGAATGTATTAGGACTGGAAAAAGCAAGACAA--CACTT-AGGAAAGCAA-TATAGAATAA-TTTGCAGCAGGAAAAAAGC--ACTAC------TAGGCAA--AGA-------ACTCTTGCTGTTTTACATTTGAAAAATGAGGTTCCT-A-TCCTAAGA--GTATCACGGGTATTGTAAAA-AAAACAGCGGTGTAGGT-TC---------TCTAAAACGTGCTAATGGTGCCACAAA---CTGAAAAAAAA-------AT---G---GACGAATTCTTA-GCTTTTACAAA-TTTACATGACAGAAAAATGATT-AAAATGCAACCATTT-GTACAATAAAA---GAAGTA-ATTCAAAATTAAGAAG-CAAA-----A-ACATGACGGGAATTAAG-AAAAGTACTGAAAAAAATGCGCCAGATT-TTCAGGCGTTTTATGAATTG-AA-GACTG-TAACCCTCAC-AAAATTC-T------GAACAGTTTATTA--TA-TTTCAGTTGGAACATGTGT-----T-GAGTGC-C-AT-AGTTTTTTTTATCAA-GGTAAAAAATAAA-TCG-C-GATA-ATGTTCA-CAGTTC-ACTCGGCGACTGAAGTAAA---A-AACTA----AA-AC--TAGGA------C-C-GCGGT--AT-ATAG-GACGGGA--GTAATTATATCCAAG-TTCATTCCCACA-CTCCTGCGGAAATACCTTGGATT-TGGGTCTTATCATGAAAGATTT-AAATAC-GTACCTCGAAGCATACGAA-TG-GTCAACTAGAAATA-CCCTGGACGAGCTGTGCATCAGACTCCATCA-TTGG-CACATT-CTTTCACTTCAACTTAGTT-CAGTAA-TCC-T-TCCTG-TTT-GGGTT-TGTTTTTCAAATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGACGGTTGTTGAT-TAAAACAGTGTTTAC-ATTGGGTTCTTCTAATTCATATACTTT--ATTTATC-TTCCACACA-C--AAGAGTC--AAATTGTGCGGTTCCT-A---A-CTATT---CTA-CATCGACCAGAACGTA-AAACCGACCAAGTTAGAACC--GTGT--T-C--AAGC-G---AAAT-TA-G-TCATTCAGTA-ACAATATGAACGAACGTTTCATT
gi|10 : aTT-CA--AG-TTC-TAT-----TTT-GGGTTGTGTTC----AATGTTGATATGCGGC-ACCG-CATTTCGACCATCAAAGG--------------C---GTTTAC-A-TGACTTCTTCTCAATCAT---------------T-TTCCAAACA-T--AAGAGTT--AAATTGTGCGATTCCT-A--TA-CTTTTTC-CT--CCTAGACTAAAACGTT-AAACCGA--AAG-TAG-ACC--GTGT--TTC--AAGCAG---AAAC--AAG-TCACTTAGTT-ATAATATGGACGAACGTTACATTac
gi|11 : gagcactttGATT-TTCACTTGTT--ATAAATTAGAA-GGATA-T-ACTTAC-C-AAAATTC-C------GGACA-TCT-TTAACTGTTTT--GTTGTGACAAAATTAATGTC-GCGTGT-ATAT-AG-TTGTTT-ATT-A-TCTAAAAA-TAAC-TCGCT-GATAGATG-TCG-CGGTTA-ACTC-GTAACGTATGAAAATCCG-AAATACCTCGGTACCGTAGGA------C-CTGCGGT--ACCATAG-GACGGGA--GT
gi|12 : tgCTG-C-ATCTAC-C-AAAATTC-TTTAAAAAAAAA-TTT-TT-------TTCAGTTGAGACAGGCTT-----T-CAGTGC-A-AT-A--TTTTTTTCTC-A-TGTACAAATTAAA-TCCCC-GATAGATG-TCA-CGGTTC-ACTC-GTGACTGATGTGAAACTA-AACTACCGCGGTATCATAGAT------A-A-GTAATGGATAATAA-TACGGGACGGTAATCAAATACATGT
gi|13 : ----ATGACAGAAACATGATT-AAAATGCAACCATTTTGTACAATGAAA-T-AAAG-A-ATTCAAAATTAAGAAG-CAAA-----A-ACATGA---------------AATACTG-AAAAAATGT-CCAGA-T-TTCAGTCGCTATATG--TTGAAA-GACTC-C-ATCTTC-C-AAAATTC-T------at
gi|14 : ataAAC-AGAAATACCCCTGGACGGACC-TGCATCATACTCCATCA-TTGG-C-CATT-CTTTCACTTCAACTTAGTT-CA--AG-TCCNN-N-NNN-NNN-NNNNN-NNNNN----NNNNNNGATTTAta
gi|15 : TAAA--AATACAG-GGTGTAGGG-TC----------CTAA----------TGGTGCCACAAAGTTCTGTGAAAAga
gi|17 : cagtttattgcctaaaa-ACCATAGGA------CGT-GGGGT--ATCATAG-GATGGGA--GTAttttttgttatctcgtttgatgtatttttagatat
gi|2 : A--TATTCAAA-CCA-AAAAATTGAATGAAAATTTAAAAAGGAAACACATAA--TATTTTTTTTTCCCAAAAAACTTGAAAATAAAGT-AT-CCTTTTAACAAGA-GTTACCCCTTCTTGAATGTAT-AGGACTG-AAAAAGCAAGACAAAACACTTTAGAAAAA-AAATATA-ATTAAAT---CATCAGT------GCTAACT-TCTTGTTTACGAAATCAGATTGTGATACCCTTGCTGTTT-ACATTTGAAAA-TGAGGTTCCT-AAT-CTATGGTTGTATCACGGGTATTGTAAAC-AATACAG-GGTGTAGGGTTC---------TCTAACTGTTCTAATCGGTGCCACAAA---CTGAAAAAAAA-------GT----T--GACGAATTCTTA-GCTTT-ATAAA-TTAC-ATGACAGAAAAATGATTAAAAATGCAACCA-TTTGTACAATGAAATT-GAAG-A-ATTCAAAA-TAAGAAG-CAAA-----A-ACATGACGGGAATTAAGAAAAAGTACTG-AAAAAATGC-CCAGATTATCCAGCCG--TTATGAATTGAAAGGACTGTT-ACCTTC-CAAAAATTCTT------GAACA-TGT-TTA--TATTTTCAGTTGAAACATGTGT-----T-GAGTCC-A-AT-AG-TTTTTTTATC-A-AGTAAAAAA-AAA-TCGCC-GATAAATG-TCA-CAGTTCAACTC-GCGACTGAAGTAAAACTA-A-----------ACCATAGGGC-----C-C-GCGGT--ATCATAGCGAC-GGA--GTAtacat
gi|3 : ACATATA--TATTCAAAACCAGAAAATTGGAATGAAA-TGTAAAA-GGAA-CCAATAAACTAATTTTTT---CCAAAA-CTTCGAAAATAAAGTGAT-CCTTT-AACAAGAAGTTACCCTTC-TTGAATGTAT-AGGAATA-AAAA--CAAGACAA--CACTTT-----------TGTA-ACT------------GG------GCTG--------GTTTACGAAATCAGGTTGTGATACCCTTGCTGTTT-ACATTTGAAAT-TGAGGTTCCTAAATC--AT-G--GTATCAC-GGTATTGTAAACAAATACAG-GGTGTAGGG-TTTCTAACTTGTCTAA----------TGGTGC--CAAA---CTG-AAAAAAC-------AT---GC--GACGAATTCTTAGGCTTT-ATAAATT----ACTACAG-AAAATGATT--AAATGCAACCATTGTGTTAAATGAAA-TGGAAG-ATATCAAAAATTAAGAAGCCAAA-----A-ACATGACGGGAATTAAG--AAAGTA-TG-AAAAAATG--CCAGATTATTCAGTCGTTAT-TGAATT---A-AACTG-T-ACCTT--C-AAAATTC-T------GAACA-TGT-TTA--TATTTTCATCTGAAACATGTGT-----T-GAGTGCAA-ATAAG---TTTTTATC-A-AGT-AAAAAT-AA-TCGCCGGATAAATG-TCACCAGTTC-A-TC-GCG-C---TGTAAAGTTATAACTA-----A-ACCATAGG-------C-C-GAGGT--ATCATA--GACGGGA--
gi|4 : CAAGTTTCATTCC-AAA-CTCCTGCGTAAATACCTTGGATT-TGG-TCTTAT-ATGAA--ATTTTAAATAC-GTACCT-GAAGCATACGAA-TG-GTCAAC-AGAA-TACCCCTGGACGGACC-TGCATCAGACTCCATCA-TTGAAC-CATTTCTTTCACTTCAACTTAGTT-CA--AGGTCC-T-T-CTG-TTTTGGGTT-TTGTC----AATGTTGATTTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTAC-A-TGACTTCTTCTTAACCATATACTTT--ATTTATC--TCCACACACC--AAGAGTC--AAATTGTGCGGTTCCT-ATTTA-CTATTTC-TTA-CCTCGACCAAAACGTTAAAACCGA--AAG-TAG-ACC--GTGT--T-TCAAAGC-GGGAAAACTTACGTTCATTCAGT--ACAATATGGACGAACGTTTCATtt
gi|5 : TTTCATTTCCAAATCTCCTGCGGAAATACCTTGGATTGTGGGTCT-AT-ATGA----TTT-AAATACCGTATCT-GAA-CATACGAA-TGCGT-AAC-AGAAAT---CCTGGACGGACC-TGCATCAGACTCCATCAATTGA-C-CATT-CTTTCCTTTCAACTTAGTT-CA--AG-TCC-T-T-CTT-TTT-GGGTT-TGTTC----AATGTTTCATTATAGCAACCGTCACTT-GGCTATCGACGGTT-TTGTTATAAAAC---GTT--C-A-TGA-TTCTTCTTAATCATATACCTTTAATTGATCATTCCACACA-CCTAAGAGTCCAAAATTGTCGGGTTCCTGA--TACCTATTTCTTTACCCTCGACCAAAACG-T-AAACCGA--AAG-TAG-ACG--TTGT--T-T--CAGC-G---AAAC-TACG-TCATTCAGTACACAATATGGAAGAAC-TTTCATa
gi|6 : cagtAAGTTTCATTCC-AAA-CTCCTGCGGAAATACCTTGG--T-TGGGTCT-AT-ATGAA--ATTT-AAATAC-GTACCT-GAAGCATACGAACTG-GTCAAC-AGAAATAACCT--GACGGACC-TGCATCAGACTCCATCA-TTGA-C-CATT-CTTTCACTTCAACTTAGTTCCA--AG-TCC-T-T-CTGTTTT-GGGTT-TGTTC----AATG-TGA-TTATAGC-ACCGTCACTT-GGCTATCGA-GGTTGTTGAT-TAAAAC---GTTTACAA-TGACTTCTTCTTAAT-ATATACTTT--ATTTA-C-TTACACACA-C--AAGAGTC--AAATTGTGC-GTTCCT-A--TA-CTATTT--CTA-CCTCGACCAAAACGTTAAAACCGA--AAG-T-G-ACCGAGTGTTGT-C--AA-C-G---AAAC-TACG-TCATTCAGTA-ACAATATGGACGAACGTTTac
gi|7 : TATTGTA------CACAG-GGTGTATGG-TC---------T-TAA----------TGGTGCCACAA----CTGTGAAAAAATTTTGTTATCTCGCTCGACGTATTCTTA-A--TT-ATAAA-T------GATAGAAAAAT---------------TATTTTCTTCAATGAAA-T-AAAG-A-ATTCAAAATTATGAAT-TAAA-----A--CATGACGGAAATTAAG-AAAAGTACTG-AAAAAATGC-CCAG-TT-TTCTGACGTT--ATAAATTGAAA-GACTG-T-ACCTTC-C-AAAATTC-T------TAACA-TTT-TTA--TATTTTCAGATGAGACAAGCTT-----T-GAGTGC-A-AT-AG--TTTTTTATT-A-TGTAAAAAATAAA-TCGTC-GATAGATG-TCA-CGGTTC-ACTC-GTGACTTGTGTAAAACTA-AATTACCGCGATACCATAGGATCCGACC-C-GCGGT--ATCATAG-GATGGGA--GTAtc
gi|8 : aCAGAAAAATGATT-AAAATGCAACCATTTTGTACAGTGAAA-T-AAAT-A-ATTCAGAATTAAGAAG-CAAATTCATATACATGACGGGACTTAAG-AAAAGTAATG-AAAAA-TGC-CCAG-TT-TTCAGTCATT--ATAAATTGAAA-GACTG-T-ACCTTC-C-AACAATC-T------GAATA-TTT-TTA--TATTTTCAGCTGAGATAGGCTT-----TAAAGTGT-A-AT-AG--TTTTTCATC-A-TGTAAAAAATAAA-TCGCC-GATAGATG-TCA-CGGTTC-ACTC-GTGACTGATGTAAAATCA-AATTACCGCGGAACCATAGGAG-----C-C-GCGGT--ATGATAG-GACGGt
gi|9 : gGAAG-CAAA-----A-ACATGACGGGAATCACG-AAAAGTACTG-AAAAAATGC-CCAG-TT-TTTGGTCGTTTTA--AATTGAAA-GACTG-T-ACCTTG-C-AAAATTC-T------TAATA-TTT-TTA--TGTTTTCAGTTGAGACAAGCTT-----T-GAGTGC-A-AT-AG--TTTCTAATC-ATGGTAAAAAAGAAATTCGCC-GATAGATG-TCA-TGGTCC-ACTT-GTGACTGATGCTAAACTA-AATTACCGCGGTAACGTAGGA------CTC-GCGGT--ATCATAG-GACGGGA--GTA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTAAAGAACTTCATCAGAGTAAGAATAATACATCCATTTTCACACAAAGGA
Unaligned ( gi|18 ): TAACGTTGGCTCATAGCTTATGCCATACATGATCAAATG