lowQualScore : 1 111
lowQualScore : 2 0 000 3 6 66 2 4 77777 2 1 5 1 1 11 66666666666666 1 1 6 11 1
lowQualScore : . . ... . . .. . . ..... . . . . . .. .............. . . . .. .
lowQualScore : 9 7 666 8 6 55 1 2 11111 4 2 3 1 1 66 77777777777777 1 1 0 66 3
consensus : TATTAT-T-GGATT---TATTACA--AATAG-AAGCGA----GCGAG-TC-CGTA-G-A--AC--------------TAG-A-TTACGAAT--TGGCA-TGGCCT
Reference ( gi|10 ) : TATTAT-T-GGATT---TATCAAA--AATAG-AAGTGA----GCGAG-TC-CATA-G-A--AC--------------TAG-A-TTATGAAT--TGGCA-TGGCCT
gi|12 : TATTAT-TTGGGTT---TATTATA--AAGAG-AAGCGG----GCG-G-TCACGTA-G-A--AA--------------TAG-A-TTACAAAT--TGGC
gi|8 : tgtTATTAT-TTGGATT---TATTGCA--AATAA-AAGC-A----GAAAA-TC-AGTA-G-A--AC--------------TGT-A-TTACAAAT--TGGCA-TGAC
gi|5 : aaaTAATAT-T-G-ATT---TCCTACA--AATAG-AAGTGG----ACAGG-TC-TGTAGG-A--AC--------------TAG-T-TTACAAAT--TGGCA-
gi|4 : ttttataatatgaatatTATTAT-T----TTGA-TATAAAACAAACAG-AAACG-----GCGAA-TC-CGAC-G-A--AC--------------TAG-A-TTACAAAT--TGACA-TGG
gi|3 : gttttatttaaaaataaTATTAT-T----TTGA-TATAAAACAAACAG-AAACG-----GCGAA-TC-CGAC-G-A--AC--------------TAG-A-TTACAAAT--TGACA-TGG
gi|7 : gtttttattaaaaataaTATTAT-T-TGGTT---TATTACA--AATAGAAAGCGG----GCGGT-CC-CGT----A--AC--------------TAA-A--TACAAAA--TGGTA-TG
gi|20 : tttataatatATTAT-TTGGATTAATTATTACA--AATAG-AAGTTG----GCGGG-TC-CGTA-G-A--AC--------------TAG-A-TT
gi|2 : ataTTATAT-GGATT---TATTACA--AAGAG-AAGCGA----GCGAA-TC-CGTA-G-A--ACTAGACCCGGGGAACTAG-A-TTACGAATGGTGGCA-TGGCCT
gi|13 : TTAT-TTGGATT---TATTACA--AATAT-AAACAA----GCGAA-TC-TGTA-G-A--AC--------------TAA-A-TTACAAAT--TAGCA-
gi|1 : AT-T-GGGTT-------ACG--AATAG-AAGAG-----GTGAA-TC-CCAC-G-A--AC--------------TAA-A-TTACAAAT--TGGCA-TGGCa
gi|11 : tttttgataatacactattataatttgT-T-GGATT---TGTCAAA--AATAA-AAGCGATCGAGCGAG-TC-CGTA-G-A--AT--------------TAC-A-TTACGAAA--TGGCA-TGGCCT
gi|9 : tT-T-GGATT---TGTCAAA--AATAA-AAGCGATCGAGCGAG-TC-CGTA-G-A--AT--------------TAC-A-TTACGAAA--TGGCA-TGGCCT
gi|21 : tT-T-GGATT---TATCAAA--AATAG-AAGCGA----GCCAG----CA----------------------------A-TTACGAAT--TGACA-TGGCCT
gi|15 : atT-T-GGATT---TGTTACA--AATAA-AAGTG-----GCGAA-TC-CGTA-A-A--AC--------------AAG-A-TTACAAAC--TAG
gi|19 : atataat-GAATA---TATTACA--AATAG-AAGCGA----GCGAA-TC-CTT--G-A--AC--------------TAG-A-TTACGAAT--TGGCA-TTGCC
gi|18 : GATT---TAATACA--AATAG-AAGCAG----GCGAA-TC-CGTA-G-A--AC--------------GAG-A-TTACAAAT--TGGTA-TGGCC
gi|16 : TT---TATCAAA----TAG--AGCGA----GCGAGTTC-CGTA-G----AC--------------TAGAA-TTACGAAT--TGGTA-TGGCCT
gi|14 : aatATAG-AAGCGA----GAAAA-TC-CGTA-C-A--AG--------------TAG-A-TTACAAAT--TGATA-TGGCCTa
gi|22 : tttttttagtggacATAG-AAGCGG----GCGAA-TC-CGTA-G-T--AC--------------TAG-T-TGACAAAG--TGACA-TGGCCT
gi|23 : tacatGA----GCGAG-TC-CGTA-G-A--AC--------------TAG-A-TTACGAAT--TGGTATTGGCC
gi|26 : GA----GGGAA-TC-CGTA-G-A--AC--------------TAG-A-GTACGAAT--TGGCA-TGGTC
gi|35 : GA----GCGAG-TC-CATA-GAA--AC--------------TAG-ATTTACGAAT--TGGC
gi|30 : cA----GCGAG-TC-CGTA-G-A--AC--------------TAG-A-TTACGAAT--TGGCA-TGGCC
gi|25 : A----GCGAA-TC-CGTA-G-A--AC--------------TAG-A-TTACGAAT--TGGCA-TGGCCT
gi|29 : A----GTGAG-TC-CATA-G-A--AC--------------TAG-A-TTACAAAT--TGGCA-TGGCC
gi|31 : A----GTGAA-CC-CGTA-G-A--AC--------------TAG-A-TTACGGAT--TAGCA-TGGCC
gi|24 : A----GCGAG-TC-CGTA-G-ATAAC--------------TAA----TACGAAT--TGGCA-TGGCCT
gi|34 : A----GCAAG-TC-CGTA-G-A------------------TA--A-TTACGAAT--TGGCA-TGGCCTa
gi|37 : ----GCGAG-TC-CGTA-G-A--AC--------------TAG-A-TTACG-AT--TGGC--TGGCC
gi|27 : CGAGGTC-CGTA-G-A--AC--------------TAG-A-TTACGAAT--TGGCA-TGGCCT
gi|32 : CGAA-TC-CGTA-G-A--AC--------------TAG-A-TTACAAAT--TGGCA-TGGCCTt
gi|28 : GAA-CC-CGTA-G-A--AG--------------TAG-A-TTACAAAT--TGACA-TGGCTT
gi|38 : ggaAA-TT-CGTA-G-A--AC--------------TAT-A-TTACGAAT--TGGCA-TGGCC
gi|36 : G-TC-CGTA-G-A--AC--------------T---A-TTACAAAT--TGGTA-TGGTCT
gi|33 : cgTA-G-A--AC--------------TAG-A-TTACAAAT--TGGCA-TGGCCTa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TTAATTATTTGAATTTATTAAACAAAATAAGAAGCGGGTGGGTCCGTAGAAAGTAGATTACAAAATTCGGCACGGCATAA
Unaligned ( gi|17 ): TGTTTTACATGCATAACAAAGAGAAGTGGCAATTCCGACGAACTGGATTACATGACTATG
Alignments
lowQualScore : 111
lowQualScore : 2 222 333 2 22 1 1 1 66666 1 1 1 1 33 66666666666666 2 11 11 1
lowQualScore : . ... ... . .. . . . ..... . . . . .. .............. . .. .. .
lowQualScore : 5 111 555 0 66 9 9 9 55555 1 1 1 1 66 44444444444444 2 55 55 2
consensus : TATTAT-T-G-GATT---TA-TTA--CAAA-TA-G-AAGCGA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
Reference ( family-144 ) : TATTAT-T-G-GATT---TA-TTA--CAAA-TA-G-AAGCGA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
gi|1 : TATAAT-T-T-GATT---GGGTTA--CGAA-TA-G-AAGAG-----GTGAA-T-C-CCAC-G--A--------------ACTAAA-TTACAAA--T--TGGCA-TGGC
gi|10 : tttttgataatacactatTATTAT-T-G-GATT---TA-TCA--AAAA-TA-G-AAGTGA----GCGAG-T-C-CATA-G--A--------------ACTAGA-TTATGAA--T--TGGCA-TGGCCT
gi|11 : T-T-G-GATT---TG-TCA--AAAA-TA-A-AAGCGATCGAGCGAG-T-C-CGTA-G--A--------------ATTACA-TTACGAA--A--TGGCA-TGGCCT
gi|12 : tTATTAT-TTG-GGTT---TA-TTA--TAAA-GA-G-AAGCGG----GCG-G-T-CACGTA-G--A--------------AATAGA-TTACAAA--T--TGGC
gi|13 : tgtTTAT-TTG-GATT---TA-TTA--CAAA-TA-T-AAACAA----GCGAA-T-C-TGTA-G--A--------------ACTAAA-TTACAAA--T--TAGCA-
gi|14 : TT---TA-GTG--GACA-TA-G-AAGCGA----GAAAA-T-C-CGTA-C--A--------------AGTAGA-TTACAAA--T--TGATA-TGGCCTa
gi|15 : ttttT-T-G-GATT---TG-TTA--CAAA-TA-A-AAGTG-----GCGAA-T-C-CGTA-A--A--------------ACAAGA-TTACAAA--C--TAG
gi|16 : atataatTT---TA-T----CAAA-TA-G-A-GCGA----GCGAG-TTC-CGTA-G--A---------------CTAGAATTACGAA--T--TGGTA-TGGCCT
gi|18 : aat-GATT---TA-ATA--CAAA-TA-G-AAGCAG----GCGAA-T-C-CGTA-G--A--------------ACGAGA-TTACAAA--T--TGGTA-TGGCCa
gi|19 : -G-AATA---TA-TTA--CAAA-TA-G-AAGCGA----GCGAA-T-C-CTT--G--A--------------ACTAGA-TTACGAA--T--TGGCA-TTGCC
gi|2 : TTATAT-G-GATT---TA-TTA--CAAA-GA-G-AAGCGA----GCGAA-T-C-CGTA-G--AACTAGACCCGGGGAACTAGA-TTACGAA--TGGTGGCA-TGGCCT
gi|20 : ATTAT-TTG-GATTAATTA-TTA--CAAA-TA-G-AAGTTG----GCGGG-T-C-CGTA-G--A--------------ACTAGA-TT
gi|21 : ataT-T-G-GATT---TA-TCA--AAAA-TA-G-AAGCGA----GCCAG-C------------------------------AA-TTACGAA--T--TGACA-TGGCCT
gi|22 : atTA--CATA-TA-G-AAGCGG----GCGAA-T-C-CGTA-G--T--------------ACTAGT-TGACAAA--G--TGACA-TGGCCT
gi|23 : GA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGTATTGGCC
gi|24 : A----GCGAG-T-C-CGTA-GATA--------------ACTAA---TACGAA--T--TGGCA-TGGCCT
gi|25 : A----GCGAA-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCTa
gi|26 : GA----GGGAA-T-C-CGTA-G--A--------------ACTAGA-GTACGAA--T--TGGCA-TGGTC
gi|27 : CGAGGT-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
gi|28 : GAA-C-C-CGTA-G--A--------------AGTAGA-TTACAAA--T--TGACA-TGGCTTt
gi|29 : ggaA----GTGAG-T-C-CATA-G--A--------------ACTAGA-TTACAAA--T--TGGCA-TGGCC
gi|3 : TATTAT-T-TTGATA---TA-AAA--CAAA-CA-G-AAACG-----GCGAA-T-C-CGAC-G--A--------------ACTAGA-TTACAAA--T--TGACA-TGG
gi|30 : gtttttattaaaaataaA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCC
gi|31 : A----GTGAA-C-C-CGTA-G--A--------------ACTAGA-TTACGGA--T--TAGCA-TGGCC
gi|32 : CGAA-T-C-CGTA-G--A--------------ACTAGA-TTACAAA--T--TGGCA-TGGCCT
gi|33 : GTA-G--A--------------ACTAGA-TTACAAA--T--TGGCA-TGGCCT
gi|34 : aatttA----GCAAG-T-C-CGTA-G--A----------------TA-A-TTACGAA--T--TGGCA-TGGCCTt
gi|35 : CGA----GCGAG-T-C-CATA-GA-A--------------ACTAGATTTACGAA--T--TGGC
gi|36 : G-T-C-CGTA-G--A--------------ACT--A-TTACAAA--T--TGGTA-TGGTCT
gi|37 : cg----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACG-A--T--TGGC--TGGCCa
gi|38 : AA-T-T-CGTA-G--A--------------ACTATA-TTACGAA--T--TGGCA-TGGCC
gi|4 : TATTAT-T-TTGATA---TA-AAA--CAAA-CA-G-AAACG-----GCGAA-T-C-CGAC-G--A--------------ACTAGA-TTACAAA--T--TGACA-TGG
gi|5 : gttttatttaaaaataaTAATAT-T-G--ATT---TC-CTA--CAAA-TA-G-AAGTGG----ACAGG-T-C-TGTAGG--A--------------ACTAGT-TTACAAA--T--TGGCA-
gi|6 : ttttataatatgaatatATTAT-TTG-AATT---TA-TTAAACAAAATAAG-AAGCGG----GTGGG-T-C-CGTA-GA-A--------------AGTAGA-TTACAAAATT--CGGCA-CGGC
gi|7 : ttaTATTAT-T-T-GGTT---TA-TTA--CAAA-TA-GAAAGCGG----GCGGT-C-C-CGT-----A--------------ACTAAA--TACAAA--A--TGGTA-TGataa
gi|8 : tttataatatTATTAT-TTG-GATT---TA-TTG--CAAA-TA-A-AAGC-A----GAAAA-T-C-AGTA-G--A--------------ACTGTA-TTACAAA--T--TGGCA-TGAC
gi|9 : aaaT-T-G-GATT---TG-TCA--AAAA-TA-A-AAGCGATCGAGCGAG-T-C-CGTA-G--A--------------ATTACA-TTACGAA--A--TGGCA-TGGCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TGTTTTACATGCATAACAAAGAGAAGTGGCAATTCCGACGAACTGGATTACATGACTATG
Alignments
lowQualScore : 111
lowQualScore : 2 222 333 2 22 1 1 1 66666 1 1 1 1 33 66666666666666 2 11 11 1
lowQualScore : . ... ... . .. . . . ..... . . . . .. .............. . .. .. .
lowQualScore : 5 111 555 0 66 9 9 9 55555 1 1 1 1 66 44444444444444 2 55 55 2
consensus : TATTAT-T-G-GATT---TA-TTA--CAAA-TA-G-AAGCGA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
Reference ( family-144 ) : TATTAT-T-G-GATT---TA-TTA--CAAA-TA-G-AAGCGA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
gi|1 : TATAAT-T-T-GATT---GGGTTA--CGAA-TA-G-AAGAG-----GTGAA-T-C-CCAC-G--A--------------ACTAAA-TTACAAA--T--TGGCA-TGGC
gi|10 : tttttgataatacactatTATTAT-T-G-GATT---TA-TCA--AAAA-TA-G-AAGTGA----GCGAG-T-C-CATA-G--A--------------ACTAGA-TTATGAA--T--TGGCA-TGGCCT
gi|11 : T-T-G-GATT---TG-TCA--AAAA-TA-A-AAGCGATCGAGCGAG-T-C-CGTA-G--A--------------ATTACA-TTACGAA--A--TGGCA-TGGCCT
gi|12 : tTATTAT-TTG-GGTT---TA-TTA--TAAA-GA-G-AAGCGG----GCG-G-T-CACGTA-G--A--------------AATAGA-TTACAAA--T--TGGC
gi|13 : tgtTTAT-TTG-GATT---TA-TTA--CAAA-TA-T-AAACAA----GCGAA-T-C-TGTA-G--A--------------ACTAAA-TTACAAA--T--TAGCA-
gi|14 : TT---TA-GTG--GACA-TA-G-AAGCGA----GAAAA-T-C-CGTA-C--A--------------AGTAGA-TTACAAA--T--TGATA-TGGCCTa
gi|15 : ttttT-T-G-GATT---TG-TTA--CAAA-TA-A-AAGTG-----GCGAA-T-C-CGTA-A--A--------------ACAAGA-TTACAAA--C--TAG
gi|16 : atataatTT---TA-T----CAAA-TA-G-A-GCGA----GCGAG-TTC-CGTA-G--A---------------CTAGAATTACGAA--T--TGGTA-TGGCCT
gi|18 : aat-GATT---TA-ATA--CAAA-TA-G-AAGCAG----GCGAA-T-C-CGTA-G--A--------------ACGAGA-TTACAAA--T--TGGTA-TGGCCa
gi|19 : -G-AATA---TA-TTA--CAAA-TA-G-AAGCGA----GCGAA-T-C-CTT--G--A--------------ACTAGA-TTACGAA--T--TGGCA-TTGCC
gi|2 : TTATAT-G-GATT---TA-TTA--CAAA-GA-G-AAGCGA----GCGAA-T-C-CGTA-G--AACTAGACCCGGGGAACTAGA-TTACGAA--TGGTGGCA-TGGCCT
gi|20 : ATTAT-TTG-GATTAATTA-TTA--CAAA-TA-G-AAGTTG----GCGGG-T-C-CGTA-G--A--------------ACTAGA-TT
gi|21 : ataT-T-G-GATT---TA-TCA--AAAA-TA-G-AAGCGA----GCCAG-C------------------------------AA-TTACGAA--T--TGACA-TGGCCT
gi|22 : atTA--CATA-TA-G-AAGCGG----GCGAA-T-C-CGTA-G--T--------------ACTAGT-TGACAAA--G--TGACA-TGGCCT
gi|23 : GA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGTATTGGCC
gi|24 : A----GCGAG-T-C-CGTA-GATA--------------ACTAA---TACGAA--T--TGGCA-TGGCCT
gi|25 : A----GCGAA-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCTa
gi|26 : GA----GGGAA-T-C-CGTA-G--A--------------ACTAGA-GTACGAA--T--TGGCA-TGGTC
gi|27 : CGAGGT-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
gi|28 : GAA-C-C-CGTA-G--A--------------AGTAGA-TTACAAA--T--TGACA-TGGCTTt
gi|29 : ggaA----GTGAG-T-C-CATA-G--A--------------ACTAGA-TTACAAA--T--TGGCA-TGGCC
gi|3 : TATTAT-T-TTGATA---TA-AAA--CAAA-CA-G-AAACG-----GCGAA-T-C-CGAC-G--A--------------ACTAGA-TTACAAA--T--TGACA-TGG
gi|30 : gtttttattaaaaataaA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCC
gi|31 : A----GTGAA-C-C-CGTA-G--A--------------ACTAGA-TTACGGA--T--TAGCA-TGGCC
gi|32 : CGAA-T-C-CGTA-G--A--------------ACTAGA-TTACAAA--T--TGGCA-TGGCCT
gi|33 : GTA-G--A--------------ACTAGA-TTACAAA--T--TGGCA-TGGCCT
gi|34 : aatttA----GCAAG-T-C-CGTA-G--A----------------TA-A-TTACGAA--T--TGGCA-TGGCCTt
gi|35 : CGA----GCGAG-T-C-CATA-GA-A--------------ACTAGATTTACGAA--T--TGGC
gi|36 : G-T-C-CGTA-G--A--------------ACT--A-TTACAAA--T--TGGTA-TGGTCT
gi|37 : cg----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACG-A--T--TGGC--TGGCCa
gi|38 : AA-T-T-CGTA-G--A--------------ACTATA-TTACGAA--T--TGGCA-TGGCC
gi|4 : TATTAT-T-TTGATA---TA-AAA--CAAA-CA-G-AAACG-----GCGAA-T-C-CGAC-G--A--------------ACTAGA-TTACAAA--T--TGACA-TGG
gi|5 : gttttatttaaaaataaTAATAT-T-G--ATT---TC-CTA--CAAA-TA-G-AAGTGG----ACAGG-T-C-TGTAGG--A--------------ACTAGT-TTACAAA--T--TGGCA-
gi|6 : ttttataatatgaatatATTAT-TTG-AATT---TA-TTAAACAAAATAAG-AAGCGG----GTGGG-T-C-CGTA-GA-A--------------AGTAGA-TTACAAAATT--CGGCA-CGGC
gi|7 : ttaTATTAT-T-T-GGTT---TA-TTA--CAAA-TA-GAAAGCGG----GCGGT-C-C-CGT-----A--------------ACTAAA--TACAAA--A--TGGTA-TGataa
gi|8 : tttataatatTATTAT-TTG-GATT---TA-TTG--CAAA-TA-A-AAGC-A----GAAAA-T-C-AGTA-G--A--------------ACTGTA-TTACAAA--T--TGGCA-TGAC
gi|9 : aaaT-T-G-GATT---TG-TCA--AAAA-TA-A-AAGCGATCGAGCGAG-T-C-CGTA-G--A--------------ATTACA-TTACGAA--A--TGGCA-TGGCCT
blockSeqs : A TG AAT . AA A A A ATCGA G T A G AT ACTAGACCCGGGGA A AT GG T
blockSeqs : . TG . . . . . . ATCGA . . . . A . T . . .
blockSeqs : . TG . . . . . . A . . . . A . . . . .
blockSeqs : . TT . . . . . . G . . . . . . . . . .
blockSeqs : . TT . . . . . . A . . . . . . . . . .
blockSeqs : . TG . . . . . . A . . . . . . . . . .
blockSeqs : . TG . . . . . . A . . . . . . . . . .
blockSeqs : . G . . . . . . G . . . . . . . . . .
blockSeqs : . G . . . . . . A . . . . . . . . . .
blockSeqs : . G . . . . . . A . . . . . . . . . .
blockSeqs : . G . . . . . . G . . . . . . . . . .
blockSeqs : . G . . . . . . A . . . . . . . . . .
blockSeqs : . G . . . . . . G . . . . . . . . . .
blockSeqs : . G . . . . . . A . . . . . . . . . .
blockSeqs : . T . . . . . . A . . . . . . . . . .
blockSeqs : G . . . . . . A . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . .
blockSeqs : . . . . . . A . . . . . . . . . .
blockSeqs : . . . . A . . . . . . . . . .
blockSeqs : A . . . . . . . . . .
blockSeqs : A . . . . . . . . . .
blockSeqs : G . . . . . . . . . .
blockSeqs : G . . . . . . . . . .
blockSeqs : G . . . . . . . . . .
blockSeqs : A . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : A****
originalCons : TATTAT-T-G-GATT---TA-TTA--CAAA-TA-G-AAGCGA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
finalCons : TATTAT-T-G-GATT---TA-TTA--CAAA-TA-G-AAGCGA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TGTTTTACATGCATAACAAAGAGAAGTGGCAATTCCGACGAACTGGATTACATGACTATG
Alignments
lowQualScore : 111
lowQualScore : 2 222 333 2 22 1 1 1 66666 1 1 1 1 33 66666666666666 2 11 11 1
lowQualScore : . ... ... . .. . . . ..... . . . . .. .............. . .. .. .
lowQualScore : 5 111 555 0 66 9 9 9 55555 1 1 1 1 66 44444444444444 2 55 55 2
consensus : TATTAT-T-G-GATT---TA-TTA--CAAA-TA-G-AAGCGA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
Reference ( family-144 ) : TATTAT-T-G-GATT---TA-TTA--CAAA-TA-G-AAGCGA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
gi|1 : TATAAT-T-T-GATT---GGGTTA--CGAA-TA-G-AAGAG-----GTGAA-T-C-CCAC-G--A--------------ACTAAA-TTACAAA--T--TGGCA-TGGC
gi|10 : tttttgataatacactatTATTAT-T-G-GATT---TA-TCA--AAAA-TA-G-AAGTGA----GCGAG-T-C-CATA-G--A--------------ACTAGA-TTATGAA--T--TGGCA-TGGCCT
gi|11 : T-T-G-GATT---TG-TCA--AAAA-TA-A-AAGCGATCGAGCGAG-T-C-CGTA-G--A--------------ATTACA-TTACGAA--A--TGGCA-TGGCCT
gi|12 : tTATTAT-TTG-GGTT---TA-TTA--TAAA-GA-G-AAGCGG----GCG-G-T-CACGTA-G--A--------------AATAGA-TTACAAA--T--TGGC
gi|13 : tgtTTAT-TTG-GATT---TA-TTA--CAAA-TA-T-AAACAA----GCGAA-T-C-TGTA-G--A--------------ACTAAA-TTACAAA--T--TAGCA-
gi|14 : TT---TA-GTG--GACA-TA-G-AAGCGA----GAAAA-T-C-CGTA-C--A--------------AGTAGA-TTACAAA--T--TGATA-TGGCCTa
gi|15 : ttttT-T-G-GATT---TG-TTA--CAAA-TA-A-AAGTG-----GCGAA-T-C-CGTA-A--A--------------ACAAGA-TTACAAA--C--TAG
gi|16 : atataatTT---TA-T----CAAA-TA-G-A-GCGA----GCGAG-TTC-CGTA-G--A---------------CTAGAATTACGAA--T--TGGTA-TGGCCT
gi|18 : aat-GATT---TA-ATA--CAAA-TA-G-AAGCAG----GCGAA-T-C-CGTA-G--A--------------ACGAGA-TTACAAA--T--TGGTA-TGGCCa
gi|19 : -G-AATA---TA-TTA--CAAA-TA-G-AAGCGA----GCGAA-T-C-CTT--G--A--------------ACTAGA-TTACGAA--T--TGGCA-TTGCC
gi|2 : TTATAT-G-GATT---TA-TTA--CAAA-GA-G-AAGCGA----GCGAA-T-C-CGTA-G--AACTAGACCCGGGGAACTAGA-TTACGAA--TGGTGGCA-TGGCCT
gi|20 : ATTAT-TTG-GATTAATTA-TTA--CAAA-TA-G-AAGTTG----GCGGG-T-C-CGTA-G--A--------------ACTAGA-TT
gi|21 : ataT-T-G-GATT---TA-TCA--AAAA-TA-G-AAGCGA----GCCAG-C------------------------------AA-TTACGAA--T--TGACA-TGGCCT
gi|22 : atTA--CATA-TA-G-AAGCGG----GCGAA-T-C-CGTA-G--T--------------ACTAGT-TGACAAA--G--TGACA-TGGCCT
gi|23 : GA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGTATTGGCC
gi|24 : A----GCGAG-T-C-CGTA-GATA--------------ACTAA---TACGAA--T--TGGCA-TGGCCT
gi|25 : A----GCGAA-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCTa
gi|26 : GA----GGGAA-T-C-CGTA-G--A--------------ACTAGA-GTACGAA--T--TGGCA-TGGTC
gi|27 : CGAGGT-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCCT
gi|28 : GAA-C-C-CGTA-G--A--------------AGTAGA-TTACAAA--T--TGACA-TGGCTTt
gi|29 : ggaA----GTGAG-T-C-CATA-G--A--------------ACTAGA-TTACAAA--T--TGGCA-TGGCC
gi|3 : TATTAT-T-TTGATA---TA-AAA--CAAA-CA-G-AAACG-----GCGAA-T-C-CGAC-G--A--------------ACTAGA-TTACAAA--T--TGACA-TGG
gi|30 : gtttttattaaaaataaA----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACGAA--T--TGGCA-TGGCC
gi|31 : A----GTGAA-C-C-CGTA-G--A--------------ACTAGA-TTACGGA--T--TAGCA-TGGCC
gi|32 : CGAA-T-C-CGTA-G--A--------------ACTAGA-TTACAAA--T--TGGCA-TGGCCT
gi|33 : GTA-G--A--------------ACTAGA-TTACAAA--T--TGGCA-TGGCCT
gi|34 : aatttA----GCAAG-T-C-CGTA-G--A----------------TA-A-TTACGAA--T--TGGCA-TGGCCTt
gi|35 : CGA----GCGAG-T-C-CATA-GA-A--------------ACTAGATTTACGAA--T--TGGC
gi|36 : G-T-C-CGTA-G--A--------------ACT--A-TTACAAA--T--TGGTA-TGGTCT
gi|37 : cg----GCGAG-T-C-CGTA-G--A--------------ACTAGA-TTACG-A--T--TGGC--TGGCCa
gi|38 : AA-T-T-CGTA-G--A--------------ACTATA-TTACGAA--T--TGGCA-TGGCC
gi|4 : TATTAT-T-TTGATA---TA-AAA--CAAA-CA-G-AAACG-----GCGAA-T-C-CGAC-G--A--------------ACTAGA-TTACAAA--T--TGACA-TGG
gi|5 : gttttatttaaaaataaTAATAT-T-G--ATT---TC-CTA--CAAA-TA-G-AAGTGG----ACAGG-T-C-TGTAGG--A--------------ACTAGT-TTACAAA--T--TGGCA-
gi|6 : ttttataatatgaatatATTAT-TTG-AATT---TA-TTAAACAAAATAAG-AAGCGG----GTGGG-T-C-CGTA-GA-A--------------AGTAGA-TTACAAAATT--CGGCA-CGGC
gi|7 : ttaTATTAT-T-T-GGTT---TA-TTA--CAAA-TA-GAAAGCGG----GCGGT-C-C-CGT-----A--------------ACTAAA--TACAAA--A--TGGTA-TGataa
gi|8 : tttataatatTATTAT-TTG-GATT---TA-TTG--CAAA-TA-A-AAGC-A----GAAAA-T-C-AGTA-G--A--------------ACTGTA-TTACAAA--T--TGGCA-TGAC
gi|9 : aaaT-T-G-GATT---TG-TCA--AAAA-TA-A-AAGCGATCGAGCGAG-T-C-CGTA-G--A--------------ATTACA-TTACGAA--A--TGGCA-TGGCCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): TGTTTTACATGCATAACAAAGAGAAGTGGCAATTCCGACGAACTGGATTACATGACTATG