lowQualScore : 111111111111111111111 1111111111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111111111111111111111111111111111111111111111111111
lowQualScore : 1 44 444 222222222222222222222 4 44 1 4 6666 4444444444444 1 4 777 11 1 1 4 4 1 1 4 2 444444 3333 4 22222222 2 2 55555 11 99999999 4 33 4 8888888888 4 4 11 4444444 4 44 555555 4 2222 44444444 77777777777777777777777 2 2222222222222 222222222 33 2 4 22222 11111 11 111 2222222222 1 1111 11111 444444 11 333 2 3 11 1111 1 33333333333 444444444444444444444 11 11 11 1 444 999999999999999999999 11 22 22 88888888888 444444444444 1 11 1 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2 3333 8888888888 1 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999 11 11 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 222222222 1 1 4444444444444444444444 4444444444444444444444444444444444444444444444444444444 2222222222 2222222222 44444444444 111 11 1 11 2222222222 3333333333333 111 111 1
lowQualScore : 6 6 7 66 555 888888888888888888888 6 6 6 6 0 66 5 0 6 3333 6 8888888888888 7 6 6 6 0 000 22 7 7 0 0 5 5 0 0 333333 7777 2 0 2 11111111 3 2 3 11111 66 88888888 0 22 0 6666666666 6 0 0 77 3333333 2 3 4 4 0 66 6 666666 0 8888 6 22222222 1 11111111111111111111111 0 6 8 6 6 0 7777777777777 0 777777777 1 88 6 6 3 0 0 8 22 22222 5 11111 0 3 11 444 8 8888888888 0 2 6666 99999 8 1 8 444444 0 8 99 8 9 666 8 4 8 6 0 0 6 11 8 4444 5 5 4 77777777777 444444444444444444444 8 11 0 0 66 5 1 1 99 2 6 555 66 555555555555555555555 4 00 1 88 55 22 11111111111 555555555555 3 1 00 0 7 5 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 88 777 4 66 6 6 4 2 2 0 0000 3 7777777777 1 6 44444444444444444444444444444444444444444444444444444444444444444444444444444444 8 11 55 0 11 8 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 22 888888888 8 4 1 2 3 3 8 4 1 8 5 1111111111111111111111 5 9999999999999999999999999999999999999999999999999999999 8 8 1111111111 1111111111 77777777777 2 777 33 0 88 3 4444444444 7777777777777 444 1 6 111 4 2 5 1
lowQualScore : . . . .. ... ..................... . . . . . .. . . . .... . ............. . . . . . ... .. . . . . . . . . ...... .... . . . ........ . . . ..... .. ........ . .. . .......... . . . .. ....... . . . . . .. . ...... . .... . ........ . ....................... . . . . . . ............. . ......... . .. . . . . . . .. ..... . ..... . . .. ... . .......... . . .... ..... . . . ...... . . .. . . ... . . . . . . . .. . .... . . . ........... ..................... . .. . . .. . . . .. . . ... .. ..................... . .. . .. .. .. ........... ............ . . .. . . . ....................................................................................................................................................................................................................................................... .. ... . .. . . . . . . .... . .......... . . ................................................................................ . .. .. . .. . ............................................................................................ .. ......... . . . . . . . . . . . ...................... . ....................................................... . . .......... .......... ........... . ... .. . .. . .......... ............. ... . . ... . . . .
lowQualScore : 0 0 0 00 000 000000000000000000000 0 0 0 0 0 00 0 0 0 0000 0 0000000000000 0 0 0 0 0 000 00 0 0 0 0 0 0 0 0 000000 0000 5 0 5 55555555 0 5 0 55555 55 00000000 0 00 0 5555555555 0 0 0 55 5555555 5 0 0 0 0 00 0 000000 0 3333 7 77777777 0 77777777777777777777777 7 7 7 7 5 8 2222222222222 8 888888888 4 22 6 4 0 0 8 0 44 00000 6 88888 8 2 00 000 0 8888888888 8 8 2222 00000 0 4 0 000000 8 0 22 0 6 444 0 0 0 0 2 8 6 00 0 2222 7 4 0 33333333333 666666666666666666666 6 99 7 7 99 7 7 7 77 0 7 222 22 111111111111111111111 7 33 0 33 77 55 55555555555 000000000000 3 0 33 7 3 3 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 55 000 0 55 0 0 0 5 5 0 0000 0 5555555555 5 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 88 8 00 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 444444444 2 6 4 5 2 2 0 6 4 0 0 6666666666666666666666 0 0000000000000000000000000000000000000000000000000000000 0 0 0000000000 8888888888 22222222222 5 555 88 0 55 2 0000000000 0000000000000 000 4 7 777 2 5 7 0
consensus : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-GTGATCTATTTCNAGCATTT-CAAAACGTCTTCTTCTTTTGATCAGGGTGTTGCNTTGCTGATCCTTTGA-TAGGTACGTTCGTTNTGTGGAATTTCCCCGCTAAATA---CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTNATATATGCCTTTCNATCTGCTNTNGCTCCCNTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGAT----GCTCTT---TTTCTTTTCCTTTCGTTT---CCTTCCACCTTT-TG-C-AGGTTTCGTCTGAA-ATCCACTCCTCCTTTT----TTTAC--GTTTCTTTGGC--CCTAGA-ATTTGTTTTCCA-GTCTCCTAGCAGTACTTTGT-TAAAATCTTCC-ATATCCACATCTT----CTTTTCCAT--CTGCAAGGACTG--AAA---A-TCGGTTTGCGAACCTTCTAGTTGGAAAG---CTCG-TTGAAC-CTGTGGGTT-TTTCAGTTT----GTGTTGATGTC-AAGTG-GCGGCGGTC--TTTGGTCTTTTC-TCTTGG-CTTTACGGAGTTTT-AACTTNAGTTT--TG-CCAG----CACTAGG-GAGTGATCGCTACCAA-T----GTCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGG--A--NAGTTCCAG-G-TTA-TTTGTGGATNTCCTTGTGCGT-GAAAGATGNTTCCGCCAATCACGTTGCAACCAAGTTGTTTTCCTGACA-AAACGTGCT--CA-GCCTNTTTCCATT-GTC-GTTACT-AT-TCTCCNA---CCT-GTTCTCCCAT-GAT-GTTTT-TTT-C---T---GTTA-TN-TNT-TCCAACCTTCGG--CATT--AAGTCTC-CT-ATGTTAATAGGACATCATGGCGTG----GGTG--TTTATC--CTACTTA-TTTTTGCAGCTNTTTCATAGG--A-----TGTGTCTTTTTCGTCT-------TCT-CAGCATCTTCNNCGNNTNCNNCTTCGTCTTCTT----CAGTTGGTGNGTAGNAGACTACTGCNGNNAGTTTGGCGAANGCCGAGTTGTATCTNGCTGTTATTANTNATCTTATTTATTCGCCCANTCACCGGTTTCCATTCCACAAACTTCTGTGAACCTCTTCTGTTGTAATTATGGCTACTCCTCTACTAGCACGATCATCACACCTTCCTGAGTGGTAGCGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGCTCCACATC-CT-GTCCATCGTGTTT-CAC-G-TTCC---GAGATCGA--TTGT--TTCGCCGATTTCTC---AGAGATCN-GNCTTGTAGTTTTCCATTTCTCGGACGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCANCCNA-CTCTACATACGGTCTTT-GGTTTAAGGATGTC---------CGTTCT-------CGGGCTGTC----AA---C--CGTCATTAGCTT----------T--------------------C-CAG-TTTCCTGG-----ATAACATCCATCC----TCC---TCCC----------NCCAATCNATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---TGTNGTTTTA-TANGG-TAG---GGT---TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCANC-CGGGCTTGGGACCGGCCATGGC
Reference ( gi|1 ) : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGA-CAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAAAAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTC---CTAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGAT----GCTCTT---TTC--TTTCCTTTTGTTT---TCTTCCGCCTTTCTG-C-AGGTTTCGTCTGAACATCCACTCCTCCTTTT----TTTAC--GTTTCTTTGGC--CTTAAA-ATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCACATCTT----GTTTTCCAT--CTGCAAGGACTG--AAA---A-TCGGTTTGCAAACCTTCTAGTTAGAAAG---TTCG-TT-AAC-CTGTGGGTT-TTTCAGTTT----ATGTTGATGTC-AAG-G-GTGGCGGTCT-TTTGGTCTTTTC-TCTT-G-CTTTACGGAGTTTTAAACTTTAGTTT--TG-CCAG----CACTAGG-GATTGATCGCTAACAATT----GTCTGCACCTTG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGG--AAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCAT-AAAAGATGG-TCCACCAA--------CA-CCAAGTTGTTTTCCTGACAGAAACGTGCTGCCA-GTCGGTCTCCATTTGTCAATTACTTAT-TCTCCCATTCCTTTGCTGTCCCATTAAT-GTTTC-TTTCCCCCTAAGGTTATTC-TCT-TCCAACCTTTGGAACATTGCAGGTATC-CTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTTATC--TTACTTAGTTTTTGCAGCTGTTTCAT--G--A-----TGTGTCTTTTTCATCT-------CTTGCAGCATCTTCCNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTGCATGACAAACTATTATTGTGAGTTTAGCAAATGCCGAGTTGTATCTGGCT-TTA--AATAATTT----------CTCATTTACAGGTTTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTGACCCATTTC-CA-GTCCATCTTGTTC-CACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC-ATTTCTNTTAAGAGATCA-ATTTTGTAGATTTCCATTTCTCTAACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTT-GGTTGAAGGATATC---------CGTTCT-------CGGGCTGGC----AA---C--C---AT---CTT----------T--------------------C-CAG-TTTCCTGG-----ATAACATCCATCC----TCC---TCTC----------TTCAATCGATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---TGTTGTTTTA-TAATG-TAG---GGT---TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAACCTCTTCTT-TT--GATCAGG-TGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT--------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTC---TTTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGAT----GCTCTT---TTTCTTTTCCTTTCGTTT----CTTC-ACCTTT-TGTC-AGGTTTTATCTGAA-ATCCACTCCT-----T----TTTAT--GTTTCTTTGGC--CCTAGA-ATTTGTTTACCA-GTCTCCTA-CAGTACCTTGT-TAAAAACTTCC-ATATCCATATCTT----CTTTTTCAT--CTGCCAGGACTG--AAA---A-TCGG-TTGCAAA-CTTCTAGTTGGGAAG---TTCGTTT-AAC-GTGACGGTT-TTTCAGGT------TGTTGATGTC-AAATG-GCAGTGGT-G-TTTGATCTTTTC-TCTTGG-CATTACGGAGTTTT-AACTTCAGTTT--TG-CCAG----CACTAGG-GGGTGATCACTAA----T----GTCTGCACCTTG-------GTTTGC-CACT---ACATCCAATAGACTACTTCCCC-ATC-TTCTGTTGATG-ATTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGG--A--TAATTCC-ATA-TTATTTTGTGGATGCCCTTATGCAT--AAAGATGGTTCCGTCAATCACGTTGCA-CCAAGTTGTTTTCCTGACA-AAACGTGTT--CA-GTCGGTCTCCA-TTGTC-GTTACTAATATCTCTCAT----------TCCCATT-AT-GTTTT-TT---CCTTA--GATAGTT-TAT-TCCAGCC-TTGG--CAT---GAGT-TCACTAATGTTAACAAGAC-TCATGGCGT-----GGTG-TTTCATC---TAC-TAGTTTTTGCAGCTG-TTCATAGA--A-----TGTATCTTCGTCTTCT-------
gi|5 : tC-ATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGA-CAGGGTGTTACCTTGCTGAT-CTTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA---CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTA-TATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGAT----GCTCTT---TTTCTTTTCCTTTCGTTT---C--TCCACCTT-CTG-CCAAGTTTCGTCTGAA-ATCCACTCCTCCTTTT----T--AC--ATTTCTTTGGC--CCTAGA-ATTTGTTTTCCA-GTCTCCAA-CAGTACTTTGT-TAAAATCTTCC-ATATCCACATCTT----CTTTTCCAT--CTGCAAGGACTG--AAA---A-TCGG-TTGCGAA-CTTCTGGTTGGAAAG---CTCG-TTGAAC-CTGTGGGTT-TTTCAGTT------TGTTGATGTC-AAGTG-GTGGTGGTC--TTTGGTCTTTTC-TCTTGG-CTTTACGGAGTTTT-AACTTTAGTTT--TGCCCAG----CACTAGG-GATTGATCGCTACCAA-T----GTCTGCACCTTG-------TTTTG-----------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGGtcagttggtgcgtaagaaactattattgagagtttggcgaatgcccagttgtatctggctttaagtaatctttcacttaccggtttccatt
gi|3 : tcTGATTTGGTTGACAGCATTTTCG-TCTTGGTTTC--TTTTCTTTTGTCTATCTTTTCCAATTTT---------TTTTGT---GATAACCA-TGTTCCTCTT----TTTA---G-------GGC--C--AAGTATTTTCTTTCCAG--CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGCTCTT----GT---ACATTACT-CA-GGA-TGTTAAATTTA-TCT-TTT----ACCT-CTATCTGAAAGG---ATC--TT-AACGCTGTTGATTCTTTGAGTTT----GCG--AATGTCTAAT-G-GTGA--ATTTCTTTGATTTTCCT-TCTT-GGCTTT------TCTTAA-CTTGAGTTTGATG-TTTGATCTCACTAGG-AAATGATCACTGCCAGC-----ATCCGCACCTC---------TCTA--GACTCTTACATCTTGTAGAGAACCTCTCCA-TT-ACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTGACGA----CCA--GGTTAATTTGTGTTTTTCCTTGTGGTT-GAATATTGT-TCCACCAA--------TAACCAGGTTGTTCTCCTTACAGA--CAT--TGACAAGCCTATTTCCATT-GTCG-TTGATTGT-TCCACAA---CCTTGTTTTCCCATGACTTGTTCC-TTTTC-------ATTATTGATCGATCCTAC-TTTGG--CATTG-AGATCTC-CT-ATGATGAT--GACA--ATAGCATGCCTAGGTATGTTT-TC--TG--TTGTTTCCTGAAG-TCTCTCATA-G--AACCTCTCTCTCCTCTTCATCT-------------GCATCTTCttctgtcctt
gi|10 : tTTCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG----TTGTTGACCA--TTTTCTAGTAATACTTCAT-T-AAATGTTCCTATATCAATTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTCTG-AA--CTTTTAATT-GAAAGCTTTTCA--T-AAT-TTTAGGGTC-TTTCAGCTTTTGGGTGTTGAT-T------G-GAGGCAGTC--TTTGGGCTCCTCGCCTT-G-CTTTTCTTAGCTTC-AACTTGATTTT--TG-TTAC----TACTAAT-GAGTGGTCATTCCCA--T----GCCAGC-CCCTG-------TTTTG----CT---AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-tgtaggcgagtaacatactatggtggtgggtttcgtttatttggagtggaatcttgctgtcataattctgtcgctgacaggcttccatccaatcaaacatgtttgtgattaggccaactcttctactgtggtgttcgtaatttcttcctgaatagattatttgatgacctgtagctagatttcttgctccacatactgtccatcgtgtttcacagatgccgagtatttctaggctgtatttttccatctcctggatgacttttgcaatctttcctgtttggtagggggtgcatacattccagtatccaactctacatactgtctttggtttaaggatgtctacatttgggctgtcagcgtccgattggctttgactgacttcctgcatgagtccagtttcctggtgggtatccatccttgttccggatctcctggtgggtgtccatcctattttcctctgtgttggtttctgtagcgggtaggattttacgtgacaggggtgctgagcctgtgcaaaaccctccccctttcacattctggacttgggaccagacaacggt
gi|9 : TTTTCCA-GTCTCCAA-CAGTACTTTGT-TAAAATCTTCC-CTATCCACATCTT----CTTTTCCAT--CTGCAAGGACTG--AAA---A-TCGGTT-GCGAAC-TTCTAGTTGGAAAG---CTCG-TTGAAG-CTGTGGATT-TTTCAGTTT------GTTGATGTC-AAG-GAGTGGTGGTC--TTTGGTCTTTTC-TCTTCG-CTTTACGGAACTTT-AACTTCAGTTT--TG-CCAG----CACTAGG-GAGTGATCGCTACCAA-T----GTCTGCACCTTG--------TTTGACCACT---ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGG--At
gi|11 : ----CACTAGGTGA-TGGTCGCTACCTACT-----TCTGCACTCCG-------CTCGA--C-CTTA-ACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGAT-CATCAGGTGGTCAATCTGGTTC-CTGCCCCTT--CCATTTGG--A--GAGTTCCAG-GTCAG-TTTGTAGATATCACGGTGTGTGAAGAGAga
gi|12 : gctgtCCAGG-CAGTGATC----ATAATTCACGATTTGCACCTCGGGCATGCTCTTA--CA-T---AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|6 : gttttgctttctttcctggtctggagcccttcaagttcaaatgggccccatgagtAAGTTGATTTCTTGACATAAA-GTGCT--CA-GCCTCTTTCCATTGGT--GTTAC--AT-TATCCTAATCCTT-GTTCCCCCAT-GAT-GTTTTATTTGC---TTAGGTTG--C-TTT-TCCAAACTTCTG--TATT-TAAGTCTC-CCCAGATCAGTAGCACATCATGATATG----G-----TATATCGTCTACTGA-CTTTTGTAG-TCTTTCATTGG--A-----TA---CTTTTTCATCC----------------TCCTCCGCATCTTCTG------------------GTTGGTGAGTAGCAGACTACTGCAGTCAATTTGGCGAAAGCTGAATTGTATTTTGCTGTTATTATTCATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCACAAACTTCTGTGAACCTCTTCTGTTGTAATTATGGCTACTCCTCTACTAGCACGATCATCACACCTTCCTGAGTGG-AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCC--TTCACATGTCCATTTTGTTT-CACT--TTCCAAGGAGCTCGATCTTATAACGTTCC-ATTTCTCTC-----ACCACGTCTTGTG-----CCAGTTTTC---CAGCTT-------------------GGTAGAGGGTCCGTACATTACAtaatatattcaat
gi|17 : gttctatcaattattaTTTGCAGCTGTT-CAT--AGAA-----TGTGTCTTTTTTGTCT-------TCTTCAGCATTTTCaaatattttattatatatatgtatatgatt
gi|2 : TCAT--G--G-----CGTGG-TGTTTCATCTACTAGTTTTTGCAGC-TGTTCATAGAATGTATCTTCGTCTTCTT----CAGTTGGTGCGTAAGAAACTATTATTGAGAGTTTGGCGAATGCCCAGTTGTATCTGGCT-TTA--AGTAATCT----------TTCACTTACCGGTTTCCATTatttggtgcgtaacaaa
gi|7 : tcaagtcttctatcttaggtaactttacaatcaacccctttcttcagaaagatgacttttttttctgtggaccaaatttttgaagtatcttagtaagtattcgaggggtttgaagttcctctgccttataagttctgcatctacattgtatttgatcaatccctgcggctttcctattctttagagcagacaatgccttttctttgctgaagtcaggtggttctgtgttgttatcaagcttgttttcagctggttttataactgcctgtgtttctgggtcgtccatgttgaaggcttgttcaaaatgatctttcaaacatttcaaaacctcttcttttgatcaggtgttgcattgctgatcttttggtacgtttgttttgtggaatttccctgctcttcgtcaagcggcataaggactgcatgtcttgtttcgaagcggctgtttctgcttcctctgctaatctctttatatatgcctttctatctgctgttgctcccttcttcacctctttatctagatctctgtactctttgcccagcttttccttcactctctctgatttcgttgataggatgctctttttcttttcctttcgtttcttcaccttttgtcaggttttatctgaaatccactcctttttatgtttctttggccctagaatttgtttaccagtctcctacagtaccttgttaaaaacttccatatccatatcttctttttcatctgccaggactgaaaatcggttgcaaacttctagttgggaagttcgtttaacgtgacggtttttcaggttgttgatgtcaaatggcagtggtgtttgatcttttctcttggcattacggagttttaacttcagttttgccagcactagggggtgatcactaatgtctgcaccttggtttgccactacatccaatagactacttccccatcttctgttgatgattacataatcaatttggtttctggttttacagtctggataattccatattattttgtggatgcccttatgcataaagatggttccgtcaatcacgttgcaccaagttgttttcctgacaaaacgtgttcagtcggtctccattgtcgttactaatatctctcattcccattatgttttttccttagatagtttattccagccttggcatgagttcactaatgttaacaagacTAACATCTG-ATGTTAC---ATGT-AG--TTGT-TTT--------T-----GTCCAT----TTC-CA--G--TCC------ATC----TTGT--TTCGCCGACTCCTT---AGAGATCT-AGCTTGTAGTTTTCCATTTCTCTAACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTT-GGTCGAAGGAAATC---------CGTTCT-------CGGGCTATC----AA---C--CGTCAT---CTT----------T--------------------C-CAG-TTTCCTGG-----ATAACATCCATCC----TCC---TCCC----------GTCAATCGATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---AGTTGTTTTA-TATGG-TAG---GAT---TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGC
gi|8 : atcaggccactcctctactaatcatcctgagtaATCTG-ATG--ACCTGATGTTAG--TTGC-TTTGA-------------TCCAT----TTC-CA--G--TCC------ATC----TTGT--TTCGCCGA---CTCCTAAGAGATCA-AGTTTGTAGTTTTCCATTTCTCTAATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTT-GGTCGAAGGATATC---------CGTTCT-------CGGGCTGGC----AA---C--CGTCAT---CTT----------T--------------------C-CAG-TTTCCTGG-----ATAACATCCATCC----TCC---TCCC----------TTCAATCGATT---CTC--TG-TTTAAGGTTTCTGTAGCCAT---TGTTGTTTTA-TATGG-TAG---GGT---TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|3 : ATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTGCTCCACATA-CT-GTCCATCGTGTTT-CAC---------AGATGCCGAGT-------------ATTTCT------AGGC-------TGTATTTTTCCATCTCCTGGATGACTTTTGC-AATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTT-GGTTTAAGGATGTC---------TACATT-------TGGGCTGTC----AG---CGTCCG-ATTGGCTT----------TGACTGACTTCCTGCATGAGTC-CAG-TTTCCTGG-----TGGGTATCCATCCTTGTTCCGGATCTCCTGGTGGGTGTCCATCCTATTTTCCTC--TGTGTT--GGTTTCTGTAGCGGG---TAGGATTTTA-C-GTGACAG---GGG---TGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACAt
gi|4 : ttgatttggttgacagcattttcgtcttggtttcttttcttttgtctatcttttccaattttttttgtgataaccatgttcctctttttagggccaagtattttctttccagcttctagcagtgtgttgttaaaatcctcaatggtgagctcttgtacattactcaggatgttaaatttatcttttacctctatctgaaaggatcttaacgctgttgattctttgagtttgcgaatgtctaatggtgaatttctttgattttccttcttggcttttcttaacttgagtttgatgtttgatctcactaggaaatgatcactgccagcatccgcacctctctagactcttacatcttgtagagaacctctccattacttgttaaccattacatgatcaatctggtttgctgtcttcccgtctggtgacgaccaggttaatttgtgtttttccttgtggttgaatattgttccaccaataaccaggttgttctccttacagacattgacaagcctatttccattgtcgttgattgttccacaaccttgttttcccatgacttgttccttttcattattgatcgatcctactttggcattgagatctcctatgatgatgacaatagcatgcctaggtatgttttctgttgtttcctgaagtctctcatagaacctctctctcctcttcatctgcatcttctgtaggcgagtaacatactatggtggtgggtttcgtttatttggagtggaatcttgctgtcataattctgtcgctgacaggcttccatccaatcaaacatgtttgtgattaggccaactcttctactgtggtgttcgtaatttcttcctgaatagattCTGTATG--ACCTGTAGCTAGATTTATACTTGCTCCACATC-CT-GTCCATCGTGTTTTCACAGATGCC-----GAT------------------ATTTCT----AGTGGTCT-GTTTT-----TTTCCATCTCCTGGATGACTTGTGA-AATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGGGTCCGGTATGGCTTTTGA---C--A---ATGA-CTTCCTGCATGAGT--------------------C-CAG-TTTCCTGGTGGGTATA--ATCCATCC-----AA---TGTC----------ACGGATCTATT---TTCCTCG-GTT--GG-TTCTGTAGC-------G--GCCCGAGTAAAG---G---GGT---AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|14 : tgattgttccaccaaccttgttttccatgacttgttacttgccttcattgattgatcctactttgcaattgagatctcccatgatgatcatcatgtcatgccctagtttgtgttctttggtgtttcctgaagttttcttcatagaatcctctctttctcctcatcatcggccatcttctgtaggcgagtaagtactatgatggtaaggttttgtgtatttgcagtggaattcttgctgttatacgagattctgtcggcttccattcaatcaaacatttttggtctgtctttgttgtgattaagagccaactcctctattatgtgtgttcattcatttcttcatgatagactatataagaCCAGTAACCAA-CTCTACATACGGTCTTT-GGGTTAAGGATGTC---------TACATT-------TGGGCTGTC----AGTGTC--CG--ATTAGCTT----------T--------------------CACTGACTTCCTGC-----ATGA-GTCCAGTT----TCC---Tac
gi|13 : GTATCCATATCTGTAGTTTTA-T---G-TGGCCAAGTCAATGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGgg
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGCtggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TCTACTGGTTTCCATTCCATTAGGGCTTTTGTGACTCTTTTTGACAACATAACTCCTACTCCTTCCTAGTGTTTACCATCATCTCTTCCTGAGTAGAGTGT
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 11111111111111111111111111111 111111111111111111111111111 1111111111111111111111111111111111111111111111111
lowQualScore : 1 2 555555 2 22 2 2 2 22 33333333 1 2 333 2 1 1 1 1 1 22 2 1 111 33333333 1 1 1 22222 1 1 333333 1 1 11 333 1 2 1 1 1111 1111 1 111 111 1 22 11111 11111 1111 2222222222 22222222222 11 11 111 11 333 1 1 888888888 11 11 1 1 111 444444444 22 666666666666666666666666666 222222222222 1 2 11 555555555555555555555555555555 111 11 111 11111111111111111111111111111 11111 11 111 1 111111111111111111111111111 11 11 3333333333333333333333 1111 444444444444444444444 333333333 11 1111 11 8888888888888888888888888888888888888888888888888 111 1 222222222 2222222 1111 111 88888888888888888888888888888888888888888 11111 222222222 333333333 111 11 11 11111 111 111 1
lowQualScore : 4 5 2 0 777777 0 77 0 0 2 0 77 4 55555555 5 4 0 555 4 4 0 5 3 2 5 6 0 3 3 7 7 1 3 44 6 3 6 0 1 2 999 0 1 55555555 3 0 0 3 3 99999 3 3 6 222222 1 1 1 1 7 6 3 3 0 3 11 666 0 0 0 0 0 2 0 99 7777 7777 999 6 6 1 6 6 6 6 3 111 6 99 2 1 99 111 7 88 5 1 2 00 6 6 55555 3 4 2 5 5 77 5 1 77 5 44444 0000 0 2 0 555 1111111111 99999999999 6 88 22 5 0 0 44 1 4 5 99 1 222 4 33 0 444 1 0 6 2 0 88 0 666666666 11 2 0 33 44 0 0 8 666 8 8 1 666666666 4 8 22 8 444444444444444444444444444 1 5 000000000000 6 4 1 77 11 000000000000000000000000000000 6 1 9 666 3 000 33 5 77 5 777 7777 1 00000000000000000000000000000 1 1 33333 9 55 22 11 3 1 222 8 0 1 8 1 0 999999999999999999999999999 3 99 11 999 8888888888888888888888 8888 66 6 0 666666666666666666666 2 777777777 88 6 99 11 99 6 4444 999 11 6 1111111111111111111111111111111111111111111111111 1 222 1 22 88 111 6 6 3 3 5 0 1 1 6 2 6 3 666666666 1111111 4444 111 22222222222222222222222222222222222222222 6 6 66666 66 666666666 000000000 1 444 11 8 11 0 2 88888 1 99 6 1 4 111 5 000 2 66 7 5
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . . . . . . .. . . . . . . ... . . ........ . . . . . ..... . . . ...... . . . . . . . . . . .. ... . . . . . . . .. .... .... ... . . . . . . . . ... . .. . . .. ... . .. . . . .. . . ..... . . . . . .. . . .. . ..... .... . . . ... .......... ........... . .. .. . . . .. . . . .. . ... . .. . ... . . . . . .. . ......... .. . . .. .. . . . ... . . . ......... . . .. . ........................... . . ............ . . . .. .. .............................. . . . ... . ... .. . .. . ... .... . ............................. . . ..... . .. .. .. . . ... . . . . . . ........................... . .. .. ... ...................... .... .. . . ..................... . ......... .. . .. .. .. . .... ... .. . ................................................. . ... . .. .. ... . . . . . . . . . . . . ......... ....... .... ... ......................................... . . ..... .. ......... ......... . ... .. . .. . . ..... . .. . . . ... . ... . .. . .
lowQualScore : 0 5 5 0 555555 0 55 0 0 5 0 55 0 55555555 5 0 0 000 0 0 0 0 0 5 0 7 7 3 3 3 3 0 3 00 7 7 7 7 0 0 000 7 0 33333333 3 7 7 3 3 00000 3 3 7 777777 0 0 0 0 3 7 3 3 7 2 88 888 0 0 2 0 0 5 8 22 0000 4444 222 0 7 7 3 7 7 7 5 777 7 22 5 0 22 777 3 33 0 0 5 22 7 7 77777 2 8 2 7 1 99 7 0 99 7 33333 6666 2 2 2 111 8888888888 66666666666 4 00 55 0 2 2 99 4 0 7 22 0 000 2 88 2 888 0 2 5 8 0 33 7 333333333 22 5 2 88 00 0 0 0 888 0 0 0 000000000 6 0 00 0 000000000000000000000000000 4 0 444444444444 0 0 4 00 66 666666666666666666666666666666 7 0 3 888 9 000 77 1 99 3 333 6666 0 88888888888888888888888888888 4 0 88888 6 66 00 00 2 4 000 2 6 4 0 0 0 888888888888888888888888888 7 00 00 444 4444444444444444444444 3333 88 7 2 222222222222222222222 8 333333333 55 7 22 22 22 7 2222 333 88 7 8888888888888888888888888888888888888888888888888 5 777 0 88 88 777 3 7 3 7 2 7 0 0 7 5 7 0 777777777 7777777 2222 777 88888888888888888888888888888888888888888 7 7 77777 88 777777777 000000000 0 000 00 0 22 8 5 22222 0 22 7 0 2 777 7 000 3 77 1 7
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGA-CAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A---CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--CT-ATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTT----TTTAC--GTTTCTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGTTGATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CAC---T--ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGA--GAATTCCA--GGTT-ATTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCGCCAAT---------ACCAAGTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCA-TTGTC-GTT-AC-T-AT-TCT-CCNA-T-CCT-T-GTTTTCCCA-TGACTTGTTTC-TTT-CCTA-----GTTA-TTTAT---T---CCAACCTTCGG--CA-TT--GAGATCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTG--TNT-ATC--CTACTTGG---TTT-TTGCAGCTNT-TTCATAG---GATGT-TCTTTT--TCGTCTTC-T-CAGCATCTTCNT-GNCT-CATCT-CGTCTTCT-----CAGTTGGCGAGTAACAG-ACTATTGTTGTGA--GTTTNGCGAAT--GCCGAGTTGTAT-CTTGCTGTTATTAGTAATTTT-T----TCGCTCA-TTACCGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC-TCTTCTGTTG------TGATTA-G-GCC-A-CTCCTCTACTA-G----CGCGNTCAT-CATTTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTG---CTCCACATCCTGTCCATC-TGTTT-CAC---TTC-----AGAT-----TTGT--TTCGCCG---AT--TTCT----AGAGATCNANCTTGTAGTTTTCCATTTCTCTAACGA---CTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTT-GGTCGAAGGATGTC---------CGTTCT-------CG----GGCTGT---CAA------CCGTC--AT-AGCTT--------------------TC-CAG-TTTCCTGG-----ATAACATCCATCCT---------CCTCCC--------TTCAATCGATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---TGTNG--TTTTA-TATGGTAGGGT---TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCA-GCACGG-GCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-GTGATCTATTTCNAGCATTT-CAAAACGTCTTCTTCTTTTGATCAGGGTGTTGCNTTGCTGATCCTTTGA-TAGGTACGTTCGTTNTGTGGAATTTCCCCGCTAAATA---CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTNATATATGCCTTTCNATCTGCTNTNGCTCCCNTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTCCTTCCACCTTT-TG-CAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTT----TTTAC--GTTTCTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAGCAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGTTGATGTCAAGTGGCGGCGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTNAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTCG-------TTTTG--CAC---T--ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGA--NAGTTCCA--GGTT-A-TTTGTGGATNTCCTTGTGCGTGAA-AGATGNTTCCGCCAATCACGTTGCAACCAAGTTGTTTTCCTGACA-AAACGTGCT--CAGCCTNTTTCCA-TTGTC-GTT-AC-T-AT-TCT-CCNA---CC--T-GTTCTCCCA-TGA--TGTTTT-TTT-CT-------GTTA-TNTNT---T---CCAACCTTCGG--CA-TT--AAG-TCTCCT-ATGTTAATAGGACATCATGGCGTG----GGTG--TTT-ATC--CTACTTA----TTT-TTGCAGCTNT-TTCATAG---GATGTGTCTTTT--TCGTCTTC-T-CAGCATCTTCNNCGNNTNCNNCTTCGTCTTCTT----CAGTTGGTGNGTAGNAG-ACTACTGCNGNNA--GTTTGGCGAAN--GCCGAGTTGTAT-CTNGCTGTTATTANTNATCTTATTTATTCGCCCANTCACCGGTTTCCATTCCA--CAA--ACTTCTGTGAACC-TCTTCTGTTG------TAATTATG-GCT-A-CTCCTCTACTA-G----CACGATCAT-CACACCTTCCTGAGTGG------TAGCGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTG---CTCCACATCCTGTCCATCGTGTTT-CAC--GTTCC---GAGATCGA--TTGT--TTCGCCG---AT--TTCTC---AGAGATCNGNCTTGTAGTTTTCCATTTCTCGGACGA---CTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCANCCNA-CTCTACATACGGTCTTT-GGTTTAAGGATGTC---------CGTTCT-------CG----GGCTGT---CAA------CCGTC--ATTAGCTT--------------------TC-CAG-TTTCCTGG-----ATAACATCCATCCT---------CCTCCC--------NCCAATCNATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---TGTNG--TTTTA-TANGGTAGGGT---TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCA-NC-CGG-GCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGA-CAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAAAAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTC---CTAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTG-CAGGTTTCGTC-TGAACATCCACTCCTCCTTTT----TTTAC--GTTTCTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTG-------TTTTG--CAC---T--ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTT-GTTTTGTGGATATCTCTATGCATAAA-AGATGG-TCCACCAAC---------ACCAAGTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTT-AT-TCT-CCCATT-CCTTT-GCTGTCCCATTAA--TGTTTC-TTT-CCCCCTAAGGTTATTCTCT---T---CCAACCTTTGGAACA-TTGCAGG-TATCCTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTT-ATC--TTACTTAG---TTT-TTGCAGCTGT-TTCAT-----GATGTGTCTTTT--TCATCTCT-TGCAGCATCTTCCNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTGCATGACAA-ACTATTATTGTGA--GTTTAGCAAAT--GCCGAGTTGTAT-CTGGCT-TTA--AATAATTT----------CTCATTTACAGGTTTCCATTNNN--NNN--NNNNNNNNNNNNN-NNNNNNNNNN------NNNNNNNN-NNN-N-NNNNNNNNNNN-N----NNNNNNNNN-NNNNNNNNNNNNNNNNN------TAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTG---ACCCATTTCCAGTCCATCTTGTTC-CACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC----AT--TTCTNTTAAGAGATCAATTTTGTAGATTTCCATTTCTCTAACGA---CTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTT-GGTTGAAGGATATC---------CGTTCT-------CG----GGCTGG---CAA------CCAT--------CTT--------------------TC-CAG-TTTCCTGG-----ATAACATCCATCCT---------CCTCTC--------TTCAATCGATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---TGTTG--TTTTA-TAATGTAGGGT---TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCA-GCACGG-GCTTGGGACCGGCCATGGC
gi|10 : TTCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-T-AAATGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAA-CTTTTAATT-GAAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTTTTG--GGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-G-------TTTTG----C---T--AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-
gi|11 : ----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCG-------CTCGA--C-C---TTAACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGA--GAGTTCCA--GGTC-AGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATGCTCTTA--CA----T--AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|13 : gGTATCCATATCTGTAG--TTTTA-TGTGGCCAAGTCAATGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCA-TC-CGG-GGTTGGGATCAGCCATGtaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTT-GGGTTAAGGATGTC---------TACATT-------TG----GGCTGT---CAG-------TGTCCGATTAGCTT--------------------TCACTGACTTCCTGC-----ATGA-GTCCAGTTT---------CCTtggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : ACTGGTTTCCATTCCA--TTAGGGCTTTTGTGA--C-TCTTT--TTGACAACATAACT----CCT-A-CTCCT-TCCTA-GTGTTTACCATCAT-C---TCTTCCTGAGTAG-------AGTGTgg
gi|17 : tctT-TTGCAGCTGT-T-CATAG---AATGTGTCTTTT--TTGTCTTCTT-CAGCATTTTC
gi|19 : A-AT---CCTCCTCCTTTTTCA-GC-CGA-GCTTGGGACCGTCCTTGGCatttggtgcgtaacaaa
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATC--TTTCAAACATTT-CAAAA---CCTCTTCTTTTGATCA-GGTGTTGCATTGCTGATCTTTT-----GGTACGTTTGTTTTGTGGAATTTCCCTGCT--------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT---TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCC-----TT----TTTAT--GTTTCTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCTA-CAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGG-TTGCAAA-CTTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGT--TGTTGATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATC---ACTAAT-G-TCTGCACCTTG-------GTTTGC-CAC---T--ACATCCAATAGACTACTTCCCC-ATC-TTCTGTTGATG-ATTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGA--TAATTCCA--TATT-ATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGC-ACCAAGTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCA-TTGTC-GTT-AC-TAATATCT-CTCA------------TTCCCA-TTA--TGTTTT-TTC-CTTA-----GATAGTTTAT---T---CCAGCCTT-GG--CA--T--GAG-TTCACTAATGTTAACAAGAC-TCATGGCGT-----GGTG--TTTCAT---CTACTAG----TTT-TTGCAGCTG--TTCATAG---AATGTATC---T--TCGTCTTCTT-CAGgta
gi|2 : tTCATGGCGTGGTGTTTCATCTACTAGTTTTT-G-CAGC-TGTTCATAGAATGTATCTTCGTCTTCTT----CAGTTGGTGCGTAAGAA-ACTATTATTGAGA--GTTTGGCGAAT--GCCCAGTTGTAT-CTGGCT-TTA--AGTAATCTT----------TCACTTACCGGTTTCCATTttggtgcgtaagaaactattattgagagtttggcgaatgcccagttgtatctggctttaagtaatctttcacttaccggtttccatt
gi|3 : tcaagtcttctatcttaggtaactttacaatcaacccctttcttcagaaagatgacttttttttctgtggaccaaatttttgaagtatcttagtaagtattcgaggggtttgaagttcctctgccttataagttctgcatctacattgtatttgatcaatccctgcggctttcctattctttagagcagacaatgccttttctttgctgaagtcaggtggttctgtgttgttatcaagcttgttttcagctggttttataactgcctgtgtttctgggtcgtccatgttgaaggcttgttcaaaatgatctttcaaacatttcaaaacctcttcttttgatcaggtgttgcattgctgatcttttggtacgtttgttttgtggaatttccctgctcttcgtcaagcggcataaggactgcatgtcttgtttcgaagcggctgtttctgcttcctctgctaatctctttatatatgcctttctatctgctgttgctcccttcttcacctctttatctagatctctgtactctttgcccagcttttccttcactctctctgatttcgttgataggatgctctttttcttttcctttcgtttcttcaccttttgtcaggttttatctgaaatccactcctttttatgtttctttggccctagaatttgtttaccagtctcctacagtaccttgttaaaaacttccatatccatatcttctttttcatctgccaggactgaaaatcggttgcaaacttctagttgggaagttcgtttaacgtgacggtttttcaggttgttgatgtcaaatggcagtggtgtttgatcttttctcttggcattacggagttttaacttcagttttgccagcactagggggtgatcactaatgtctgcaccttggtttgccactacatccaatagactacttccccatcttctgttgatgattacataatcaatttggtttctggttttacagtctggataattccatattattttgtggatgcccttatgcataaagatggttccgtcaatcacgttgcaccaagttgttttcctgacaaaacgtgttcagtcggtctccattgtcgttactaatatctctcattcccattatgttttttccttagatagtttattccagccttggcatgagttcactaatgttaacaagacTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-TC-CAATTTTTTTTGTGAT-AACCA-TGTTCCTCTT----TTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATCT-TTT----ACCT-CTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTTGCG--AATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTT------T--CTTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC---------TCTA--GACTCTT--ACATCTTGTAGAGAACCTCTCC-ATT-ACTTGTTAAC-CATTACATGATCAATCTGGTTTGCT-G--TCTTCCCGTCTGGT--GACGACCA--GGTTAA-TTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT--------AACCAGGTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCA-TTGTC-GTTGAT-T-GT-TCC-ACAA---CCT-T-GTTTTCCCA-TGACTTGTTCC-TTT-TC-------ATTA-TTGATCGAT---CCTA-CTTTGG--CA-TT--GAGATCTCCT-ATGATGAT--GACA--ATAGCATGCCTAGGTA--TGT-TTT--CTG-TTG----TTTCCTGAAG-TCT-CTCATAG---AA----------------CCTC-T-C----TCTCC----TCTTCATCTGCATCTTCT-------GTAGGCGAGTAACAT-ACTATGGTGGTGG--GTTTCGTTTAT--TTGGAGTGGAAT-CTTGCTGTCA-TAAT--TCT------GTCGC----TGACAGGCTTCCA-TCCAATCAA--AC--ATGT-------------TTG------TGATTA-G-GCCAA-CTCTTCTACTG-T----GGTGTTCGT-AATTTCTTCCTGAATAG-------ATTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTG---CTCCACATACTGTCCATCGTGTTT-CAC-----------AGAT--------------GCCGAGTAT--TTCT-----------AGGC-TGTATTTTTCCATCTCCTGGATGA---CTTTTG-CAATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTT-GGTTTAAGGATGTC---------TACATT-------TG----GGCTGT---CAG-------CGTCCGATTGGCTTTGACTGACTTCCTGCATGAGTC-CAG-TTTCCTGG-----TGGGTATCCATCCTTGTTCCGGATCTCCTGGTGGGTGTCCATCCTATTTTCCTC--TGTGTT--GGTTTCTGTAGCGG-----GTAGGATTTTA-CGTGACAGGGG---TGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTC-TGG-ACTTGGGACCAGACA
gi|4 : t-AT-T-GT-TCCACCAA---CC--TTGTTTTCC-A-TGACTTGTTAC-TTG-CC-------TTCA-TTGAT---TGATCCTACTTT--G--CAATT--GAGATCTCCC-ATGATGAT----CATCATGTCATGCCCTAGTT--TGT-GTT--CT--TTGGTGTTTC-CTGAAGTTTTCTTCATAG---AATCC-TCTCTT--TC---TCC-T-CA------TCATCGGC--------CATCTTCT-------GTAGGCGAGTA--AGTACTA-TGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTATACGAGATTCTGT----------------CGGCTTCCATTCAAT-CAA--ACATTTTTGGTCTGTCTT-TGTTG------TGATTAAGAGCC-AACTCCTCTATTATG----TGTGTTCATTCATTTCTTCATGA-TAGACTATATAA-GACTGTATG--ACCTGTAGCTAGATTTATACTTG---CTCCACATCCTGTCCATCGTGTTTTCAC-----------AGAT--------------GCCG---ATATTTCT----AGTGGTCTGTTTT-----TTTCCATCTCCTGGATGA---CTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGGGTCCGGTATGGCTTTTGACAATGACTTCCTGC--ATGAG-----------------------TC-CAG-TTTCCTGGTGGGTATA--ATCCATCC----------AATGTC--------ACGGATCTATT---TTCCTCG-GTT--GG-TTCTGTAGC---------GG--CCCGAGTAAAG--GGGT---AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACA-TC-TGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGA-CAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA---CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCT-ATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCC--TT----TTTAC--ATTTCTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGG-TTGCGAA-CTTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTT--TGTTGATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTG-------TTTTG-------------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : AAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCA-TTGGT-GTT-AC---AT-TAT-CCTAATCCT--T-GTTCCCCCA-TGA--TGTTTTATTTGCTTAG----GTTG--CTTT---T---CCAAACTTCTG--TA-TTT-AAG-TCTCCCCAGATCAGTAGCACATCATGATATG----G-----TAT-ATCGTCTACTGA----CTT-TTGTAG-TCT-TTCATTG---GATA---CTTTT--TCATCCTCCT-CCGCATCTTCTG---------------------------GTTGGTGAGTAGCAG-ACTACTGCAGTCA--ATTTGGCGAAA--GCTGAATTGTAT-TTTGCTGTTATTATTCATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCA--CAA--ACTTCTGTGAACC-TCTTCTGTTG------TAATTATG-GCT-A-CTCCTCTACTA-G----CACGATCAT-CACACCTTCCTGAGTGG-------AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCCTTCACA---TGTCCATTTTGTTT-CAC--TTTCC---AAG------------------------------------GAGCTCGATCTTATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : gttctatcaattattaG-GCC-A-CTCCTCTACTA-------------AT-CA-----TCCTGAGTA-------TAACATCTG-ATGTTACATG----TAG--TTGT-TTT--------------TGTCCAT----TTC-CA---GTCC-------ATC----TTGT--TTCGCCG---AC--TCCTT---AGAGATCTAGCTTGTAGTTTTCCATTTCTCTAACTA---CTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTT-GGTCGAAGGAAATC---------CGTTCT-------CG----GGCTAT---CAA------CCGTC--AT---CTT--------------------TC-CAG-TTTCCTGG-----ATAACATCCATCCT---------CCTCCC--------GTCAATCGATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---AGTTG--TTTTA-TATGGTAGGAT---TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCA-GCACGG-GCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : atcaTCTG-ATG--ACCTGATGTTAG--TTGC-TTTG---ATCCATTTCCAGTCCATC------------------------------TTGT--TTCGCCG---AC--TCCTA---AGAGATCAAGTTTGTAGTTTTCCATTTCTCTAATGA---CTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTT-GGTCGAAGGATATC---------CGTTCT-------CG----GGCTGG---CAA------CCGTC--AT---CTT--------------------TC-CAG-TTTCCTGG-----ATAACATCCATCCT---------CCTCCC--------TTCAATCGATT---CTC--TG-TTTAAGGTTTCTGTAGCCAT---TGTTG--TTTTA-TATGGTAGGGT---TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCA-GCACGG-GCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTT-GCGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTTGT--TGATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTG--------TTTGACCAC---T--ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGA--GAt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 11 1 1 1 11 33333333 1 1 222 1 1 1 1 1 111 1 33 1 22 444444444 1 1 1 22222 1 1 111 1 1 11 111 1 1 1 1111 1111 1 111 111 11 11 22 22 11111 1111 2222222222 2222222222 11 11 111 11 11 1 1 4444444444 1 11 11 1 1 1111 222222 111 4444444444444444444444 1111111 11 5555555555555555555555555555 1 222 444444444444444444444444444444444444444444444444444 11 1 7777777777777777777777777777 11 11 44444444444444444444444 111 2 22222222 33333333 11 1111 77777777777777777777777777777777777777777777777 2222222 11111 1111 1 222222222 777777777777777777777777777777 11 11111 1111 44444444444444444444444444 33333333333 111 11 11 11111 111 111 111 1
lowQualScore : 1 5 1 5 999999 5 88 5 5 1 5 88 1 55555555 5 1 5 111 1 1 5 5 1 1 5 6 3 3 333 3 44 6 2 00 0 11 666666666 3 3 3 99999 3 3 6 999 7 77 3 3 3 11 444 0 2 2 0 0 0 2 3 99 7777 7777 999 6 6 1 4 6 6 6 3 111 6 99 2 1 99 111 66 33 1 2 00 6 6 1 22 3 2 5 1 0 888 5 1 77 5 44444 0000 0 1 3 555 1111111111 9999999999 6 88 22 5 0 0 55 1 4 5 111 1 11 0 33 0 3 1 0 6 0 0 3 2 7777777777 0 11 1 0 33 11 0 0 8 3333 8 1 333333 3 666 8 8 8888888888888888888888 1 5 8888888 0 8 2 0 88 1 44 11 1111111111111111111111111111 99 5 2 666 7 000 666666666666666666666666666666666666666666666666666 1 0 3 99 0 5 8 1 1 11 8 0 1 8 0 0 8888888888888888888888888888 3 99 11 8 1 11111111111111111111111 666 0 0 99999999 6 7 2 99999999 6 6 99 11 99 6 4444 4 4 00000000000000000000000000000000000000000000000 7777777 3 1 44444 1 1111 1 6 3 3 5 0 1 1 6 2 1 99 666666666 6 555555555555555555555555555555 55 11111 9 4444 77777777777777777777777777 00000000000 444 11 8 11 0 2 88888 1 99 1 111 111 5 000 2 0 2
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . ... . .. . . .. . .. ......... . . . ..... . . . ... . .. . . . .. ... . . . . . . . . .. .... .... ... . . . . . . . . ... . .. . . .. ... .. .. . . .. . . . .. . . . . . ... . . .. . ..... .... . . . ... .......... .......... . .. .. . . . .. . . . ... . .. . .. . . . . . . . . . .......... . .. . . .. .. . . . .... . . ...... . ... . . ...................... . . ....... . . . . .. . .. .. ............................ .. . . ... . ... ................................................... . . . .. . . . . . .. . . . . . . ............................ . .. .. . . ....................... ... . . ........ . . . ........ . . .. .. .. . .... . . ............................................... ....... . . ..... . .... . . . . . . . . . . . .. ......... . .............................. .. ..... . .... .......................... ........... ... .. . .. . . ..... . .. . ... ... . ... . . .
lowQualScore : 0 5 0 0 000000 0 00 0 0 0 5 00 0 55555555 5 0 0 000 0 0 5 0 0 0 0 7 3 3 777 3 00 7 0 77 7 77 000000000 3 3 3 00000 3 3 7 000 3 33 3 3 2 88 000 0 5 5 2 0 0 5 2 22 0000 4444 222 0 7 7 2 7 7 7 5 777 7 22 5 0 22 777 55 33 0 5 22 7 7 0 00 2 2 7 9 7 333 7 7 99 7 33333 6666 2 4 2 111 8888888888 6666666666 4 00 55 0 2 2 22 4 0 7 777 0 00 8 88 2 5 2 2 5 8 0 2 0 2222222222 0 22 0 2 88 22 0 0 0 8888 0 0 222222 6 444 0 0 0000000000000000000000 4 0 6666666 8 0 2 8 88 4 22 66 6666666666666666666666666666 22 2 0 888 5 000 444444444444444444444444444444444444444444444444444 4 6 8 44 6 8 0 0 4 00 2 6 4 0 6 0 6666666666666666666666666666 7 00 00 0 0 66666666666666666666666 777 0 2 33333333 7 7 8 11111111 4 7 22 22 22 7 2222 0 0 88888888888888888888888888888888888888888888888 7777777 5 5 88888 0 8888 5 7 3 7 2 7 0 0 7 2 0 22 777777777 7 000000000000000000000000000000 88 88888 3 2222 88888888888888888888888888 00000000000 000 00 0 22 8 5 22222 0 22 7 777 777 7 000 3 7 1
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTT----TTTAC--GTTTCTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTG-TGATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--C-ACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAATC-------A-CCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-A-T-TCTCCCA-TCC--TTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TAT-GATCCAACCTTCGG--C-ATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGNAGCTNT-TTCATAGGATGT-TCTTTTTCGTCTTC-T-CAGCATCTTC-TG-CT----T-CGTCTTCT--------CAGTTGGCGAGTAACAG-ACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTAT-AGTAATTCT-----NTCGC-C-ATT-ACCGGTTTCCATTCCA--CAA--ACTTNTGTG-ACC--TCTTCTGTTG------TGATTA--GGCC-ACTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTG---NTCCACNTCCNGTCCATC-T-G-TTTCA----------------CAGAT-TGT--TTCGCCG---ATTTCT----A--GAGATC-AGCTTGTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTT--------------------TC--CAG-T---TTCCTGGATGACGTCCATCC----TCC------------TC-CCT--------TCAAT----CG-----ATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---TGTNG--TTTTATATGGTA---GGGT---TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--CTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTT----TTTAC--GTTTCTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGTTGATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--C-ACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTATTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCGCCAAT--------A-CCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-A-T-TCTCCNA-TCC--TTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TAT---TCCAACCTTCGG--C-ATTG-AGATCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGGATGT-TCTTTTTCGTCTTC-T-CAGCATCTTCNTGNCTCATCT-CGTCTTCT--------CAGTTGGCGAGTAACAG-ACTATTGTTGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTATTAGTAATTTT-----TTCGCTC-ATT-ACCGGTTTCCATTCCA--CAA--ACTTNTGTG-ACC--TCTTCTGTTG------TGATTA--GGCC-ACTCCTCTACTA-GCG-CGNTCA-TCATTTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTG---CTCCACATCCTGTCCATC-T-G-TTTCACT-------------TCAGATTTGT--TTCGCCG---ATTTCT----A--GAGATCNANCTTGTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TAGCTT--------------------TC--CAG-T---TTCCTGGATAACATCCATCC----TCC------------TC-CCT--------TCAAT----CG-----ATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---TGTNG--TTTTATATGGTA---GGGT---TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGACAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAA-AAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTCC--TAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTGC-AGGTTTCGTC-TGAACATCCACTCCTCCTTTT----TTTAC--GTTTCTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTG-------TTTTG--C-ACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCATAAA-AGATGGT-CCACCAAC--------A-CCAA-GTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTTA-T-TCTCCCA-TTCCTTTGCTGTCCCATTAAT-GTTTC-TTT-CCCCCTAAGG-TTA-TTCTCT---TCCAACCTTTGGAAC-ATTGCAGGTATCCTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTTATC--TTACTTAGT-TTT--TGCAGCTGT-TTCAT--GATGTGTCTTTTTCATCTCT-TGCAGCATCTTCCNNNNNNNNNN-NNNNNNNNNNNNNNNACAGTTGGTGCATGACAA-ACTATTATTGTGA-GTTTAGCAAA--TGCCGAGTTGTA-TCTGGCT-TTA--AATAATTT----------CTC-ATTTACAGGTTTCCATTNNN--NNN--NNNNNNNNN-NNN--NNNNNNNNNN------NNNNNN--NNNN-NNNNNNNNNNNN-NNN-NNNNNN-NNNNNNNNNNNNNNNNNNNN----TAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTG---ACCCATTTCCAGTCCATC-TTG-TTCCACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC----ATTTCTNTTAA--GAGATCAATTTTGTAGATTTCCATTTCTCT-A--ACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTTGGTT-GAAGGATATC---------CGTTCTCGGGCTGGCAACCATC--------TT--------------------TC--CAG-T---TTCCTGGATAACATCCATCC----TCC------------TC-TCT--------TCAAT----CG-----ATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---TGTTG--TTTTATAATGTA---GGGT---TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|10 : TTCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-T-AAATGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAA-CTTTTAATT-GAAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTTTTG--GGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-G-------TTTTG-----CT---AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-
gi|11 : ----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCG-------CTCGA--C--CTTA-ACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGAG--AGTTCCA--GGTCAGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATGCTCTTA--C-A-T---AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|13 : gGTATCCATATCTGTAG--TTTTATGTGGCC---AAGTCAATGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGtaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTTGGGT-TAAGGATGTC---------TACATTTGGGCTGTCAG-TGTCCGATTAGCTT--------------------TCA-CTGAC---TTCCTGCATGA-GTCCAGTT----TCC------------Ttggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : T-ACTGGTTTCCATTCCA--TTAGGGCTTTTGTG-A-C--TCTTT--TTGACAACATAACT-----CCTACTCCT-TCCTA-GTGTTTACCA-TCATCTCTTCCTGAGTAG------gg
gi|17 : tcTT--TGCAGCTG--TTCATAGAATGTGTCTTTTTTGTCTTCTT-CAGCATTTTCATagtgt
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGCttggtgcgtaacaaa
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAA---CCTCTTCTTTTGATCAGGTGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT---------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT--TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCCT-----T----TTTAT--GTTTCTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCTA-CAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGGTT-GCAAAC-TTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGTTGT--TGATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATCACTA---AT-G-TCTGCACCTTG-------GTTTG--CCACT---ACATCCAATAGACTACTTCCCCA-TC-TTCTGTTGATGA-TTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGAT--AATTCCA--TATTATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGCA-CCAA-GTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCATT-GTCG-TT-ACT-AATATCTCTCA-T----------TCCCATTA--TGTTTT-TTC-CT---TA--G-ATAGTT-TAT---TCCAGCCTT-GG--C-AT-G-AGTTC-ACTAATGTTAACAAGAC-TCATGGCGTG-----GTGTTTC-ATC---TACT-------------AGTTTT-TGCA---GCTGT-TCAT--------------AGAAT----GTATCT----T-CGTCTTCTT-------CAGTTGGTGCGTAAGAA-ACTATTATTGAGA-GTTTGGCGAA--TGCCCAGTTGTA-TCTGGCT-TTA--AGTAA-TCT-----TTCAC----TT-ACCGGTTTCCATTgta
gi|3 : tTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-T-CCAATTTTTTTTGTGAT-AACCA-TGTTCCTCTT----TTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATCT-TTT----ACCT-CTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTTGCG--AATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTTTC--------TTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC---------TCTA--G-ACTCTTACATCTTGTAGAGAACCTCTCCA-TT-ACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTG--ACGACCA--GGTTAATTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT--------AACCAG-GTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCATT-GTCG-TTGATT-G-T-TCCACAA--CC--TTGTTTTCCCATGACTTGTTCC-TTT-TC-------A-TTA-TT-GATCGATCCTA-CTTTGG--C-ATTG-AGATCTCCT-ATGATGAT--GACA--ATAGCATGCCTAGGTATGT--TTT--CTG-TTGTT-TCC--TGAAG-TCT-CTCATAGAA----CCTCTCTC-TCCTC-T----------------TCATCTGCATCTTCT----------GTAGGCGAGTAACAT-ACTATGGTGGTGG-GTTTCGTTTA--TTTGGAGTGGAA-TCTTGCTGTCA----TAATTCT-----GTCGC----TG-ACAGGCTTCCA-TCCAATCAA--AC--ATGT--------------TTG------TGATTA--GGCCAACTCTTCTACTG-TGG-TGTTCG-TAATTTCTTCCTGAATAG-------ATTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTG---CTCCACATACTGTCCATCGT-G-TTTCA----------------CAGAT---------GCCGAGTATTTCT----A--G-------GC-TGTATTTTTCCATCTCCTG-G--ATGACTTTTG-CAATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTTGGTT-TAAGGATGTC---------TACATTTGGGCTGTCAG-CGTCCGATTGGCTTTGACTGACTTCCTGCATGAGTC--CAG-T---TTCCTGGTGGGTATCCATCCTTGTTCCGGA---------TCTCCTGGTGGGTGTCCATC---CT-----ATTTTCCTC--TGTGTT--GGTTTCTGTAGCGG-----GTAGGATTTTACGTGACA---GGGG---TGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACA
gi|4 : t-ATT-G-T-TCCACCA-ACC--TTGTTTTCC-ATGACTTGTTAC-TTG-CC---T-----TCA-TT-GATTGATCCTACTTT--G--CAATTG-AGATCTCC-CATGATGAT----CATCATGTCATGCCCTAGTTTGT--GTT--CT--TTGGTGTTTCCTGAAGTTTTCTTCATAGAATCC-TCTCTT---TCTCC-T-CATCATC-----GGC-------CATCTTCT----------GTAGGCGAGTA--AGTACTATGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTATACGAGATTCT-----GT------------CGGCTTCCATTCAAT-CAA--ACATTTTTG-GTCTGTCTT-TGTTG------TGATTAAGAGCCAACTCCTCTATTATGTG-TGTTCATTCATTTCTTCATGA-TAGACTATATAA-GACTGTATG--ACCTGTAGCTAGATTTATACTTG---CTCCACATCCTGTCCATCGT-GTTTTCA----------------CAGAT---------GCCGAT-ATTTCT----A--GTGGTC-----TGTTTTTTTCCATCTCCTG-G--ATGACTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGG--GT---CCGGT--A-TGGCTT--------------------TTGACAA-TGACTTCCTGCATGA-GTCCAGTT----TCCTGGTGGGTATAATC-CAT--------CCAATGTCACGGATCTATT---TTCCTCG-GTT--GG-TTCTGTAGC---------GG--CCCGA----GTAAAGGGGT---AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA----CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCC--TT----TTTAC--ATTTCTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGG-TTGCGAA-CTTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTT--TGTTGATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTG-------TTTTG------------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : GTTCTATCAATT-------A-TTAAAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCATT-GGTG-TT-AC--A-T-TATCCTAATCC--TTGTTCCCCCATGA--TGTTTTATTTGCT---TA--GGTTG-CT-T-T---TCCAAACTTCTG--T-ATTT-AAGTCTCCCCAGATCAGTAGCACATCATGATATG-------GTAT--ATCGTCTACT-GAC-TTT--TGTAG-TCT-TTCATTGGATA---CTTTTTCATCCTCCT-CCGCATCTTC-TG---------------------------GTTGGTGAGTAGCAG-ACTACTGCAGTCA-ATTTGGCGAA--AGCTGAATTGTA-TTTTGCTGTTATTATTCATTTTATTTATTCGCCCAATC-ACTGGTTTCCATTCCA--CAA--ACTTCTGTGAACC--TCTTCTGTTG------TAATTAT-GGCT-ACTCCTCTACTA-GCA-CGATCA-TCACACCTTCCTGAGTGG-------AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCCTTCACA---TGTCCAT-------------------------------TTTGT--TTCAC------TTTCC----AAGGAGCTCGATCTTATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : ATCA--GGCC-ACTCCTCTACTA----------A-TCAT-----CCTGAGTA-------TAACATCTG-ATGTTACATG----TAG--TTGT-TTTT---GTCCATTTCCAGTCCATC-T------------------------------TGT--TTCGCCG---ACTCCTT---A--GAGATCTAGCTTGTAGTTTTCCATTTCTCT-A--ACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTTGGTC-GAAGGAAATC---------CGTTCTCGGGCTATCAACCGTC--A-T--CTT--------------------TC--CAG-T---TTCCTGGATAACATCCATCC----TCC------------TC-CCG--------TCAAT----CG-----ATT---CTC--TG-GTTAAGGTTTCTGTAGCCAT---AGTTG--TTTTATATGGTA---GGAT---TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : TCTG-ATG--ACCTGATGTTAG--TTGC-TTTG---ATCCATTTCCAGTCCATC-T------------------------------TGT--TTCGCCG---ACTCCT----AA-GAGATCAAGTTTGTAGTTTTCCATTTCTCT-A--ATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTTGGTC-GAAGGATATC---------CGTTCTCGGGCTGGCAACCGTC--A-T--CTT--------------------TC--CAG-T---TTCCTGGATAACATCCATCC----TCC------------TC-CCT--------TCAAT----CG-----ATT---CTC--TG-TTTAAGGTTTCTGTAGCCAT---TGTTG--TTTTATATGGTA---GGGT---TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTT-GCGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTTGT--TGATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTG--------TTTGACC-ACT---ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--At
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 11111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 11 1 1 1 11 33333333 1 1 222 1 1 1 1 1 111 1 33 1 22 444444444 1 1 1 22222 1 1 11 1 1 11 111 1 1 1 11 1 111 111 22 222 11111 1111 2222222222 222222222 11 11 111 11 11 1 1 333333333 1 11 11 1 1 11 222222 111 6666666666666666666666 22222 11 4444 2222222 1111 2222 222222222 22222222222222222222222222222222 1111 11 1 3333333 555555555555 11 11 44444444444444444444444 111111 1 22222222 33333333 11 111 2222222222222222222222222222222222222222222222222222222222222 111 1111 1 222222222 4444444 1111111111111 1 222222222222222 333333333333 2222222222222 11 333333333 1111 111 4444444444444444444 111 1
lowQualScore : 1 5 1 5 999999 5 88 5 5 1 5 88 1 55555555 5 1 5 111 1 1 5 5 1 1 5 6 3 3 333 3 44 6 2 00 0 11 666666666 3 3 3 99999 3 3 6 88 7 77 3 3 3 11 444 0 2 2 0 0 0 2 0 99 66 11 999 6 6 1 6 6 6 3 111 6 99 2 1 99 111 7 88 77 1 2 00 6 6 999 3 2 5 1 0 888 5 1 77 5 44444 0000 0 2 0 555 1111111111 999999999 6 88 22 5 0 0 44 1 4 5 111 1 11 0 33 0 1 1 0 6 0 0 3 666666666 0 11 1 0 33 11 0 0 8 66 8 3 333333 666 8 8 1111111111111111111111 1 44444 88 8 1 0 88 1 44 11 2222 1 6666666 0000 8 99 1 9 666 3 0 5555 555555555 3 1 77777777777777777777777777777777 1 0 0000 0 1 8 1 1 11 8 0 1 8 0 0 0000000 0 3 1 555555555555 1 7 99 11 8 1 11111111111111111111111 111111 6 3 0 44444444 6 7 2 99999999 6 6 99 11 99 6 1 111 1 2 3 2222222222222222222222222222222222222222222222222222222222222 3 1 999 77 1 1111 1 2 3 3 5 0 1 1 6 2 1 99 666666666 6 1111111 7777777777777 2 5 888888888888888 444444444444 8888888888888 11 66 0 6 888888888 1 4444 111 8888888888888888888 5 000 2 0 2
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . ... . .. . . .. . .. ......... . . . ..... . . . .. . .. . . . .. ... . . . . . . . . .. .. .. ... . . . . . . . ... . .. . . .. ... . .. .. . . .. . . ... . . . . . ... . . .. . ..... .... . . . ... .......... ......... . .. .. . . . .. . . . ... . .. . .. . . . . . . . . ......... . .. . . .. .. . . . .. . . ...... ... . . ...................... . ..... .. . . . .. . .. .. .... . ....... .... . .. . . ... . . .... ......... . . ................................ . . .... . . . . . .. . . . . . . ....... . . . ............ . . .. .. . . ....................... ...... . . . ........ . . . ........ . . .. .. .. . . ... . . . ............................................................. . . ... .. . .... . . . . . . . . . . . .. ......... . ....... ............. . . ............... ............ ............. .. .. . . ......... . .... ... ................... . ... . . .
lowQualScore : 0 5 0 0 000000 0 00 0 0 0 5 00 0 55555555 5 0 0 000 0 0 5 0 0 0 0 7 3 3 777 3 00 7 0 77 7 77 000000000 3 3 3 00000 3 3 7 33 3 33 3 3 2 88 000 0 5 5 2 0 0 5 8 22 44 00 222 0 7 7 7 7 7 5 777 7 22 5 0 22 777 3 33 77 0 5 22 7 7 000 2 2 7 9 7 333 7 7 99 7 33333 6666 2 2 2 111 8888888888 666666666 4 00 55 0 2 2 44 4 0 7 777 0 00 8 88 2 0 2 2 5 8 0 2 000000000 0 22 0 2 88 22 0 0 0 88 0 8 444444 444 0 0 4444444444444444444444 4 22222 88 0 4 8 88 4 22 66 0000 0 6666666 4444 0 22 0 3 888 5 7 8888 333333333 3 0 11111111111111111111111111111111 4 6 2222 6 0 0 0 4 00 2 6 4 0 6 0 4444444 8 2 0 888888888888 5 8 00 00 0 0 66666666666666666666666 333333 7 3 2 55555555 7 5 8 11111111 4 7 22 22 22 7 0 777 0 5 3 5555555555555555555555555555555555555555555555555555555555555 5 5 333 77 0 8888 5 5 3 7 2 7 0 0 7 2 0 22 777777777 7 8888888 8888888888888 5 0 000000000000000 222222222222 0000000000000 00 44 8 7 333333333 0 2222 777 7777777777777777777 7 000 3 7 1
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA-NCC--TTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TAT-GATCCAACCTT-GG--CA-TTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGT-TCTTTTTCGTCTTC-T-CAGCATCTTCCGC--CGTCTTC-T--------------CAGTTGGCGAGTAACAG-ACTATTATNGTGAG-TTTNGCGAAT--GCCGAGTTGTAT-CTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CCT--CTTCTGTTG------TGATTA-GG--CC-A-CTCCTCTACTA-GCG-TGNTCAT-CATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCC---ACNTCCAGTCCATC-T-GTTT-CAC-----------AGAT------TGT--TTCGCCGA---T--TTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---T---------------GCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA-TCC--TTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TAT-GATCCAACCTTCGG--CA-TTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGNAGCTNT-TTCATAGGATGT-TCTTTTTCGTCTTC-T-CAGCATCTTCTGCTTCGTCTTC-T--------------CAGTTGGCGAGTAACAG-ACTATTATNGTGAG-TTTNGCGAAT--GCCGAGTTGTAT-CTTGCTGTTAT-A-GTAATTCTNT-----CGCC--ATTACCGGTTTCCATTCCA--CAA--ACTTNTGTGA-CCT--CTTCTGTTG------TGATTA-GG--CC-A-CTCCTCTACTA-GCG-TGNTCAT-CATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCC---ACNTCCNGTCCATC-T-GTTT-CAC-----------AGAT------TGT--TTCGCCGA---T--TTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGGATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTNGTTTTATAT----GGTA---GGGT---T---------------GCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGACAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAA-AAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTCC--TAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTGC-AGGTTTCGTC-TGAACATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCATAAA-AGATGGT-CCACCAA--------CACCAA-GTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTTAT-TCTCCCA-TTCCTTTGCTGTCCCATTAAT-GTTTC-TTT-CCCCCTAAGG-TTA-TTCTCT---TCCAACCTTTGGAACA-TTGCAGGTATCCTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTTATC--TTACTTAGT-TTT--TGCAGCTGT-TTCAT--GATGTGTCTTTTTCATCTCT-TGCAGCATCTTCCNNNNNNNNNNN-NNNNNNNNNNNNNNACAGTTGGTGCATGACAA-ACTATTATTGTGAG-TTTAGCAAAT--GCCGAGTTGTAT-CTGGCT-TTA--A-ATAATT-TCT-----CAT----TTACAGGTTTCCATTNNN--NNN--NNNNNNNNNN-NNN--NNNNNNNNN------NNNNNN-NN--NN-N-NNNNNNNNNNN-NNN-NNNNNNN-NNNNNNNNNNNNNNNNNNN----TAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTGACCC---ATTTCCAGTCCATC-TTGTTC-CACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC-A---T--TTCTNTTAA-GAGATC-A-ATTTTGTAGATTTCCATTTCTCT-A--ACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTTGGTT-GAAGGATATC---------CGTTCTCGGGCTGGCAACCATC--------TTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCTCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAA----TGTA---GGGT---T---------------GCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|10 : TCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-TAAA-TGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAACTTT-TAATTG-AAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTTTTG--GGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-G-------TTTTG----CT---AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-
gi|11 : t----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCG-------CTCGA--C-CTTA-ACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGAG--AGTTCCA--GGTCAGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATGCTCTTA--CA-T---AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|13 : gGTATCC-ATATC------TGTAGTTTTATGT----GGCC---AAGTCAAT---------------GTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGtaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTTGGGT-TAAGGATGTC---------TACATTTGGGCTGTCAG-TGTCCGATTAGCTTT--CA-CTGAC---TTCCTGCATGA-GTCCA---GTT---------TCC------------Ttggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : TACTGGTTTCCATTCCA--TTAGGGCTTTTGTGA--CT--CTTT--TTGACAACATAACT------CCTA-CTCCT-TCCTA-GTGTTTACCAT-CATCTCTTCCTGAGTAG------gg
gi|17 : tcTT--TGCAGCTGT-T-CATAGAATGTGTCTTTTTTGTCTTCTT-CAGCATTTTCagtgt
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGCatttggtgcgtaacaaa
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAA---CCTCTTCTTTTGATCAGGTGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT---------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT--TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCC-----TTTTTATGTTT--CTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCT-ACAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGG-TTGCAAA-CTTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGTTGT-T-GATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATC---ACTAAT-G-TCTGCACCTTG-------GTTTGC-CACT---ACATCCAATAGACTACTTCCCC-ATC-TTCTGTTGATG-ATTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGAT--AATTCCA--TATTATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGCACCAA-GTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCATT-GTCG-TT-ACTAATATCTCTCA-----------TTCCCATTA--TGTTTT-TTC-CT---TA--G-ATAGTT-TAT---TCCAGCCTT-GG--CA--TG-AGTTC-ACTAATGTTAACAAGAC-TCATGGCGT-----GGTGTTTC-AT---CTAC-TAGT-TTT--TGCAGCTG--TTCATAGAATGT----------------------AT------CTTCGTCTTCTT--------------CAGTTGGTGCGTAAGAA-ACTATTATTGAGAG-TTTGGCGAAT--GCCCAGTTGTAT-CTGGCT-TTA--A-GTAA-TCTTT-----CAC----TTACCGGTTTCCATTgta
gi|3 : tTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-T-CCAATTTTTTTTGTGAT-AACCA-TGTTCCTCTTTTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATCT-TTT----ACCT-CTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTTGCG--AATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTTTC--------TTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC---------TCTA--GACTCTTACATCTTGTAGAGAACCTCTCCA-TT-ACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTG--ACGACCA--GGTTAATTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT-------AACCAG-GTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCATT-GTCG-TTGATT-GT-TC-CACA-ACC--TTGTTTTCCCATGACTTGTTCC-TTT-TC-------A-TTA-TT-GATCGATCCTACTTT-GG--CA-TTG-AGATCTCCT-ATGATGAT--GACA--ATAGCATGCCTAGGTATGT--TTT--CTG-TTGTT-TCC--TGAAG-TCT-CTCATAGAAC-C-TCTCTCTCCTCTTCAT-CTGCATCTTCTG-----------------------------TAGGCGAGTAACAT-ACTATGGTGGTGGG-TTTCGTTTAT--TTGGAGTGGAAT-CTTGCTGTCAT-A----ATTCTGT-----CGC----TGACAGGCTTCCAT-CCAATCAA--AC--ATGT--------------TTG------TGATTA-GG--CC-AACTCTTCTACTG-TGG-TGTTCGT-AATTTCTTCCTGAATAG-------ATTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTGCTCC---ACATACTGTCCATCGT-GTTT-CAC-----------AGAT--------------GCCGAGTAT--TTCT----A-G--------GCT--GTATTTTTCCATCTCCTG-G--ATGACTTTTGC-AATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTTGGTT-TAAGGATGTC---------TACATTTGGGCTGTCAG-CGTCCGATTGGCTTTGAC--TGA-C---TTCCTGCATGA-GTCCAGTTTCCTGGTGGGTATCC------------ATCCTT-GTT----CCGG-----ATCTCC--TGGT--GGGTGTCCAT--CCTATTTTCCTCTGTGTTGGTTTCTGTAGCGGGTA---GGAT---TTTACGTGACAGGGGTGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACA
gi|4 : t-ATT-GT-TCCACCA-ACC--TTGTTTTCC-ATGACTTGTTAC-TTG-CC---T-----TCA-TT-GATTGATCCTACTTT--G--CAATTG-AGATCTCC-CATGATGAT----CATCATGTCATGCCCTAGTTTGT--GTT--CT--TTGGTGTTTCCTGAAGTTTTCTTCATAGAATCC-TCTCTTTC---TCC-T-CATCATCG---GC--CATCTTC-T----------------GTAGGCGAGTAA--GTACTATGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTAT-ACGAGATTCTGT-----CG-----------GCTTCCATTCAAT-CAA--ACATTTTTGG-TCTGTCTT-TGTTG------TGATTA-AGAGCC-AACTCCTCTATTATGTG-TGTTCATTCATTTCTTCATGA-TAGACTATATAA-GACTGTATG--ACCTGTAGCTAGATTTATACTTGCTCC---ACATCCTGTCCATCGT-GTTTTCAC-----------AGAT--------------GCCGA---TATTTCT----A-GTGGTC-T-GTTT-----TTTTCCATCTCCTG-G--ATGACTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGG--GT---CCGGT--A-TGGCTTT--TGACAA-TGACTTCCTGCATGA-GTCCA---GTT---------TCCTGGTGGGTATAATCCATCCAATGTCAC--GGATCTATTTTCCTCGGTT--GG-TTCTGTAGC----------------GGCCCGA--------GTAAAGGGGT---A---------------GCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA----CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCC--TTTTTACATTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGG-TTGCGAA-CTTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGT-T-GATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTG-------TTTTG-----------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : GTTCTATCAAT-------TATTAAAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCATT-GGTG-TT-AC--AT-TATCCTAATCC--TTGTTCCCCCATGA--TGTTTTATTTGCT---TA--GGTTG-CT-T-T---TCCAAACTTCTG--TA-TTT-AAGTCTCCCCAGATCAGTAGCACATCATGATATG-------GTAT--ATCGTCTACT-GAC-TTT--TGTAG-TCT-TTCATTGGATA---CTTTTTCATCCTCCT-CCGCATCTTCTG----------------------------GTTGGTGAGTAGCAG-ACTACTGCAGTCAA-TTTGGCGAAA--GCTGAATTGTAT-TTTGCTGTTATTA-TTCATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCA--CAA--ACTTCTGTGAACCT--CTTCTGTTG------TAATTATGG--CT-A-CTCCTCTACTA-GCA-CGATCAT-CACACCTTCCTGAGTGG-------AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCCTTCACAT---GTCCATT-TTGTTT-CAC-----------------------T--TTC--CAA--------------G-GAGCTCGA-TCTT-ATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : ATCA-GG--CC-A-CTCCTCTACTA----------AT-CAT-----CCTGAGTA-------TAACATCTG-ATGTTACATG----TAG--TTGT-TTTTGTCC---ATTTCCAGTCCATC-T------------------------------TGT--TTCGCCGA---C--TCCTT---A-GAGATCTA-GCTT-GTAGTTTTCCATTTCTCT-A--ACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTTGGTC-GAAGGAAATC---------CGTTCTCGGGCTATCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCGTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------AGTTGTTTTATAT----GGTA---GGAT---T---------------TCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : TCTG-ATG--ACCTGATGTTAG--TTGC-TTTGATCC---ATTTCCAGTCCATC-T------------------------------TGT--TTCGCCGA---C--TCCT----AAGAGATC-AAGTTT-GTAGTTTTCCATTTCTCT-A--ATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTTGGTC-GAAGGATATC---------CGTTCTCGGGCTGGCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGTTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---T---------------GCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTT-GCGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTTGT-T-GATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTG--------TTTGACCACT---ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--At
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 11 1 1 1 11 33333333 1 1 222 1 1 1 1 1 111 1 33 1 22 444444444 1 1 1 22222 1 1 11 1 1 11 111 1 1 1 11 1 111 111 22 222 11111 1111 2222222222 222222222 11 11 111 11 11 1 1 333333333 1 11 11 1 1 11 222222 111 66666666666666666666666 111111 11 4444 2222222 1111 000000000000000000000000000000000000000000000000000000000000 11 1 33333 333333333333 11 11 44444444444444444444444 111 2 22222222 33333333 11 111 22222222222222222222222222222222222222222222222222222222222 111 1111 1 222222222 4444444 1111111111111 1 222222222222222 333333333333 2222222222222 11 333333333 1111 111 555555555555555 111 1
lowQualScore : 1 5 1 5 999999 5 88 5 5 1 5 88 1 55555555 5 1 5 111 1 1 5 5 1 1 5 6 3 3 333 3 44 6 2 00 0 11 666666666 3 3 3 99999 3 3 6 88 7 77 3 3 3 11 444 0 2 2 0 0 0 2 0 99 66 11 999 6 6 1 6 6 6 3 111 6 99 2 1 99 111 7 88 77 1 2 00 6 6 999 3 2 5 1 0 888 5 1 77 5 44444 0000 0 2 0 555 1111111111 999999999 6 88 22 5 0 0 44 1 4 5 111 1 11 0 33 0 1 1 0 6 0 0 3 666666666 0 11 1 0 33 11 0 0 8 66 8 3 111111 666 8 8 11111111111111111111111 1 777777 0 8 1 0 88 1 44 11 2222 1 6666666 0000 8 99 1 9 666 222222222222222222222222222222222222222222222222222222222222 1 0 3 99 0 1 8 1 1 11 8 0 1 8 0 0 55555 0 3 1 111111111111 1 3 99 11 8 1 11111111111111111111111 666 0 0 44444444 6 7 2 99999999 6 6 99 11 99 6 1 111 1 2 3 22222222222222222222222222222222222222222222222222222222222 3 1 999 77 1 1111 1 6 3 3 5 0 1 1 6 2 1 99 666666666 6 1111111 7777777777777 1 5 888888888888888 444444444444 8888888888888 11 66 0 6 888888888 4444 111 333333333333333 5 000 2 0 2
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . ... . .. . . .. . .. ......... . . . ..... . . . .. . .. . . . .. ... . . . . . . . . .. .. .. ... . . . . . . . ... . .. . . .. ... . .. .. . . .. . . ... . . . . . ... . . .. . ..... .... . . . ... .......... ......... . .. .. . . . .. . . . ... . .. . .. . . . . . . . . ......... . .. . . .. .. . . . .. . . ...... ... . . ....................... . ...... . . . . .. . .. .. .... . ....... .... . .. . . ... ............................................................ . . . .. . . . . . .. . . . . . . ..... . . . ............ . . .. .. . . ....................... ... . . ........ . . . ........ . . .. .. .. . . ... . . . ........................................................... . . ... .. . .... . . . . . . . . . . . .. ......... . ....... ............. . . ............... ............ ............. .. .. . . ......... .... ... ............... . ... . . .
lowQualScore : 0 5 0 0 000000 0 00 0 0 0 5 00 0 55555555 5 0 0 000 0 0 5 0 0 0 0 7 3 3 777 3 00 7 0 77 7 77 000000000 3 3 3 00000 3 3 7 33 3 33 3 3 2 88 000 0 5 5 2 0 0 5 8 22 44 00 222 0 7 7 7 7 7 5 777 7 22 5 0 22 777 3 33 77 0 5 22 7 7 000 2 2 7 9 7 333 7 7 99 7 33333 6666 2 2 2 111 8888888888 666666666 4 00 55 0 2 2 44 4 0 7 777 0 00 8 88 2 0 2 2 5 8 0 2 000000000 0 22 0 2 88 22 0 0 0 88 0 8 000000 444 0 0 44444444444444444444444 4 000000 8 0 4 8 88 4 22 66 0000 0 6666666 4444 0 22 0 3 888 444444444444444444444444444444444444444444444444444444444444 4 6 8 44 6 0 0 0 4 00 2 6 4 0 6 0 44444 8 2 0 666666666666 5 3 00 00 0 0 66666666666666666666666 777 0 2 55555555 7 5 8 11111111 4 7 22 22 22 7 0 777 0 5 7 55555555555555555555555555555555555555555555555555555555555 5 5 333 77 0 8888 5 7 3 7 2 7 0 0 7 2 0 22 777777777 7 8888888 8888888888888 0 0 000000000000000 222222222222 0000000000000 00 44 8 7 333333333 2222 777 333333333333333 7 000 3 7 1
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCAA-CC--TTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TA-T-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGT-TCTTTTTCGTCTTC-T-CAGCATCTTC-GCCATCTTC-T----------------CAGTTGGCGAGTAACAG-ACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-ACTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCC---ACNTCCAGTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG---ATTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCAN-CC--TTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TA-T-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGT-TCTTTTTCGTCTTC-T-CAGCATCTTCCGCCGTCTTC-T----------------CAGTTGGCGAGTAACAG-ACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-ACTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCC---ACNTCCAGTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG---ATTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGACAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAA-AAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTCC--TAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTGC-AGGTTTCGTC-TGAACATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCATAAA-AGATGGT-CCACCAA--------CACCAA-GTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTTAT-TCTCCCAT-TCCTTTGCTGTCCCATTAAT-GTTTC-TTT-CCCCCTAAGG-TTA-TTCTC-T---TCCAACCTTTG-GAACATTGCAGGTATCCTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTTATC--TTACTTAGT-TTT--TGCAGCTGT-TTCATG--ATGTGTCTTTTTCATCTCT-TGCAGCATCTTCCNNNNNNNNN-NNNNNNNNNNNNNNNNACAGTTGGTGCATGACAA-ACTATTATTGTGA-GTTTAGCAAA--TGCCGAGTTGTA-TCTGGCT-TTA--A-ATAATT-TCT-----CAT----TTACAGGTTTCCATTNNN--NNN--NNNNNNNNNN-NN--NNNNNNNNNN------NNNNNN--NNNN-NNNNNNNNNNNN-NNN-NNNNNN-NNNNNNNNNNNNNNNNNNNN----TAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTGACCC---ATTTCCAGTCCATC-TTG-TTCCACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC----ATTTCTNTTAA-GAGATC-A-ATTTTGTAGATTTCCATTTCTCT-A--ACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTTGGTT-GAAGGATATC---------CGTTCTCGGGCTGGCAACCATC--------TTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCTCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAA----TGTA---GGGT---------------TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|10 : TCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-TAAA-TGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAACTTT-TAATTG-AAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTTTTG--GGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-G-------TTTTG----CT---AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-
gi|11 : t----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCG-------CTCGA--C-CTTA-ACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGAG--AGTTCCA--GGTCAGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATGCTCTTA--CA-T---AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|13 : gGTATCC-ATATC------TGTAGTTTTATGT----GGCC---AAGTCAA------------TGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGtaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTTGGGT-TAAGGATGTC---------TACATTTGGGCTGTCAG-TGTCCGATTAGCTTT--CA-CTGAC---TTCCTGCATGA-GTCCA---GTT---------TCC------------Ttggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : TACTGGTTTCCATTCCA--TTAGGGCTTTTGTGA--C--TCTTT--TTGACAACATAACT-----CCTACTCCT-TCCTA-GTGTTTACCA-TCATCTCTTCCTGAGTAG------gg
gi|17 : tcTT--TGCAGCTGT-T-CATAGAATGTGTCTTTTTTGTCTTCTT-CAGCATTTTCagtgt
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGCatttggtgcgtaacaaa
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAA---CCTCTTCTTTTGATCAGGTGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT---------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT--TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCC-----TTTTTATGTTT--CTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCT-ACAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGG-TTGCAAA-CTTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGTTGT-T-GATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATC---ACTAAT-G-TCTGCACCTTG-------GTTTGC-CACT---ACATCCAATAGACTACTTCCCC-ATC-TTCTGTTGATG-ATTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGAT--AATTCCA--TATTATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGCACCAA-GTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCATT-GTCG-TT-ACTAATATCTCTCA-----------TTCCCATTA--TGTTTT-TTC-CT---TA--G-ATAGTT-TA-T---TCCAGCCTT-G-G--CA-TG-AGTTC-ACTAATGTTAACAAGAC-TCATGGCGT-----GGTGTTTC-AT---CTAC-TAGT-TTT--TGCAGCTG--TTCATAGAATGT----------------------ATCTT----CGTCTTCTT----------------CAGTTGGTGCGTAAGAA-ACTATTATTGAGA-GTTTGGCGAA--TGCCCAGTTGTA-TCTGGCT-TTA--A-GTAA-TCTTT-----CAC----TTACCGGTTTCCATTgta
gi|3 : tTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-T-CCAATTTTTTTTGTGAT-AACCA-TGTTCCTCTTTTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATCT-TTT----ACCT-CTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTTGCG--AATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTTTC--------TTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC---------TCTA--GACTCTTACATCTTGTAGAGAACCTCTCCA-TT-ACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTG--ACGACCA--GGTTAATTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT-------AACCAG-GTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCATT-GTCG-TTGATT-GT-TC-CACAA-CC--TTGTTTTCCCATGACTTGTTCC-TTT-TC-------A-TTA-TT-GA-TCGATCCTACTTT-G-G--CATTG-AGATCTCCT-ATGATGAT--GACA--ATAGCATGCCTAGGTATGT--TTT--CTG-TTGTT-TCC--TGAAG-TCT-CTCATAGAAC-C-TCTCTCTCCTCTTC-------ATCT---GC-ATCTTC-T------------------GTAGGCGAGTAACAT-ACTATGGTGGTGG-GTTTCGTTTA--TTTGGAGTGGAA-TCTTGCTGTCA-----TAATTCTGT-----CGC----TGACAGGCTTCCA-TCCAATCAA--AC--ATGT--------------TTG------TGATTA--GGCCAACTCTTCTACTG-TGG-TGTTCG-TAATTTCTTCCTGAATAG-------ATTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTGCTCC---ACATACTGTCCATCGT-G-TTTCAC-----------AGAT--------------GCCGAGTATTTCT----A-G--------GC-T-GTATTTTTCCATCTCCTG-G--ATGACTTTTG-CAATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTTGGTT-TAAGGATGTC---------TACATTTGGGCTGTCAG-CGTCCGATTGGCTTTGAC--TGA-C---TTCCTGCATGA-GTCCAGTTTCCTGGTGGGTATCC------------ATCCTT-GTT----CCGG-----ATCTCC--TGGT--GGGTGTCCAT--CCTATTTTCCTCTGTGTTGGTTTCTGTAGCGGGTA---GGATTTTACGTGACAGGGGTGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACA
gi|4 : t-ATT-GT-TCCACCAA-CC--TTGTTTTCC-ATGACTTGTTAC-TTG-CC---T-----TCA-TT-GATT-GATCCTACTTT-G-C--AATTG-AGATCTCC-CATGATGAT----CATCATGTCATGCCCTAGTTTGT--GTT--CT--TTGGTGTTTCCTGAAGTTTTCTTCATAGAATCC-TCTCTT---TCTCC-T-CATCA---TCGGCCATCTTC-T------------------GTAGGCGAGTA--AGTACTATGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTAT-ACGAGATTCTGT-----C-----------GGCTTCCATTCAAT-CAA--ACATTTTTGG-TCTGTCTT-TGTTG------TGATTAAGAGCCAACTCCTCTATTATGTG-TGTTCATTCATTTCTTCATGA-TAGACTATATAA-GACTGTATG--ACCTGTAGCTAGATTTATACTTGCTCC---ACATCCTGTCCATCGT-GTTTTCAC-----------AGAT--------------GCCGAT-ATTTCT----A-GTGGTC-T-GTTT-----TTTTCCATCTCCTG-G--ATGACTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGG--GT---CCGGT--A-TGGCTTT--TGACAA-TGACTTCCTGCATGA-GTCCA---GTT---------TCCTGGTGGGTATAATCCATCCAATGTCAC--GGATCTATTTTCCTCGGTT--GG-TTCTGTAGC--------------G--GCCCGA--------GTAAAGGGGT---------------AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA----CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCC--TTTTTACATTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGG-TTGCGAA-CTTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGT-T-GATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTG-------TTTTG-----------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : GTTCTATCAAT-------TATTAAAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCATT-GGTG-TT-AC--AT-TATCCTAATCC--TTGTTCCCCCATGA--TGTTTTATTTGCT---TA--GGTTG-CT-T--T---TCCAAACTT-CTG--TATTT-AAGTCTCCCCAGATCAGTAGCACATCATGATATG-------GTAT--ATCGTCTACT-GAC-TTT--TGTAG-TCT-TTCATTGGATA---CTTTTTCATCCTCCT-CCGCATCTTCTG----------------------------GTTGGTGAGTAGCAG-ACTACTGCAGTCA-ATTTGGCGAA--AGCTGAATTGTA-TTTTGCTGTTATTA-TTCATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCA--CAA--ACTTCTGTGAACC--TCTTCTGTTG------TAATTAT-GGCT-ACTCCTCTACTA-GCA-CGATCA-TCACACCTTCCTGAGTGG-------AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCCTTCACAT---GTCCATT-TTG-TTTCAC-----------------------T--TTC--CA---A---------G-GAGCTCGA-TCTT-ATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : ATCA--GGCC-ACTCCTCTACTA----------A-TCAT-----CCTGAGTA-------TAACATCTG-ATGTTACATG----TAG--TTGT-TTTTGTCC---ATTTCCAGTCCATC-T------------------------------TGT--TTCGCCG---ACTCCTT---A-GAGATCTA-GCTT-GTAGTTTTCCATTTCTCT-A--ACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTTGGTC-GAAGGAAATC---------CGTTCTCGGGCTATCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCGTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------AGTTGTTTTATAT----GGTA---GGAT---------------TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : TCTG-ATG--ACCTGATGTTAG--TTGC-TTTGATCC---ATTTCCAGTCCATC-T------------------------------TGT--TTCGCCG---ACTCCT----AAGAGATC-AAGTTT-GTAGTTTTCCATTTCTCT-A--ATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTTGGTC-GAAGGATATC---------CGTTCTCGGGCTGGCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGTTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTT-GCGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTTGT-T-GATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTG--------TTTGACCACT---ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--At
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 11 1 1 1 11 33333333 1 1 222 1 1 1 1 1 111 1 33 1 22 444444444 1 1 1 22222 1 1 11 1 1 11 111 1 1 1 11 1 111 111 22 222 11111 1111 2222222222 222222222 11 11 111 11 11 1 1 333333333 1 11 11 1 1 11 2222 111 66666666666666666666666 111111 11 4444 2222222 1111 000000000000000000000000000000000000000000000000000000000000 11 1 33333 333333333333 11 11 44444444444444444444444 111 2 22222222 33333333 11 111 22222222222222222222222222222222222222222222222222222222222 111 1111 1 222222222 4444444 1111111111111 1 222222222222222 333333333333 2222222222222 11 333333333 1111 111 555555555555555 111 1
lowQualScore : 1 5 1 5 999999 5 88 5 5 1 5 88 1 55555555 5 1 5 111 1 1 5 5 1 1 5 6 3 3 333 3 44 6 2 00 0 11 666666666 3 3 3 99999 3 3 6 88 7 77 3 3 3 11 444 0 2 2 0 0 0 2 0 99 66 11 999 6 6 1 6 6 6 3 111 6 99 2 1 99 111 7 88 77 1 2 00 6 6 999 3 2 5 1 0 888 5 1 77 5 44444 0000 0 2 0 555 1111111111 999999999 6 88 22 5 0 0 44 1 4 5 111 1 11 0 33 0 1 1 0 6 0 0 3 666666666 0 11 1 0 33 11 0 0 8 66 8 3 4444 666 8 8 11111111111111111111111 1 777777 0 8 1 0 88 1 44 11 2222 1 6666666 0000 8 99 1 9 666 555555555555555555555555555555555555555555555555555555555555 0 3 1 88 0 1 8 1 1 11 8 0 1 8 0 0 55555 0 3 1 111111111111 1 3 99 11 8 1 11111111111111111111111 666 0 0 44444444 6 7 2 99999999 6 6 99 11 99 6 1 111 1 2 3 22222222222222222222222222222222222222222222222222222222222 3 1 999 77 1 1111 1 6 3 3 5 0 1 1 6 2 1 99 666666666 6 1111111 7777777777777 1 5 888888888888888 444444444444 8888888888888 11 66 0 6 888888888 4444 111 333333333333333 5 000 2 0 2
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . ... . .. . . .. . .. ......... . . . ..... . . . .. . .. . . . .. ... . . . . . . . . .. .. .. ... . . . . . . . ... . .. . . .. ... . .. .. . . .. . . ... . . . . . ... . . .. . ..... .... . . . ... .......... ......... . .. .. . . . .. . . . ... . .. . .. . . . . . . . . ......... . .. . . .. .. . . . .. . . .... ... . . ....................... . ...... . . . . .. . .. .. .... . ....... .... . .. . . ... ............................................................ . . . .. . . . . . .. . . . . . . ..... . . . ............ . . .. .. . . ....................... ... . . ........ . . . ........ . . .. .. .. . . ... . . . ........................................................... . . ... .. . .... . . . . . . . . . . . .. ......... . ....... ............. . . ............... ............ ............. .. .. . . ......... .... ... ............... . ... . . .
lowQualScore : 0 5 0 0 000000 0 00 0 0 0 5 00 0 55555555 5 0 0 000 0 0 5 0 0 0 0 7 3 3 777 3 00 7 0 77 7 77 000000000 3 3 3 00000 3 3 7 33 3 33 3 3 2 88 000 0 5 5 2 0 0 5 8 22 44 00 222 0 7 7 7 7 7 5 777 7 22 5 0 22 777 3 33 77 0 5 22 7 7 000 2 2 7 9 7 333 7 7 99 7 33333 6666 2 2 2 111 8888888888 666666666 4 00 55 0 2 2 44 4 0 7 777 0 00 8 88 2 0 2 2 5 8 0 2 000000000 0 22 0 2 88 22 0 0 0 88 0 8 6666 444 0 0 44444444444444444444444 4 000000 8 0 4 8 88 4 22 66 0000 0 6666666 4444 0 22 0 3 888 333333333333333333333333333333333333333333333333333333333333 7 0 7 88 6 0 0 0 4 00 2 6 4 0 6 0 44444 8 2 0 666666666666 5 3 00 00 0 0 66666666666666666666666 777 0 2 55555555 7 5 8 11111111 4 7 22 22 22 7 0 777 0 5 7 55555555555555555555555555555555555555555555555555555555555 5 5 333 77 0 8888 5 7 3 7 2 7 0 0 7 2 0 22 777777777 7 8888888 8888888888888 0 0 000000000000000 222222222222 0000000000000 00 44 8 7 333333333 2222 777 333333333333333 7 000 3 7 1
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TA-T-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGT-TCTTTTTCGTCTTC-T-CA-CATCTTCGCCATCTTC-T------------------AGTTGGCGCGTAACAA-ACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-ACTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCC---ACNTCCAGTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG---ATTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TA-T-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGT-TCTTTTTCGTCTTC-T-CAGCATCTTCGCCATCTTC-T-----------------CAGTTGGCGAGTAACAG-ACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-ACTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCC---ACNTCCAGTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG---ATTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGACAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAA-AAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTCC--TAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTGC-AGGTTTCGTC-TGAACATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCATAAA-AGATGGT-CCACCAA--------CACCAA-GTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTTAT-TCTCCCATTC-CTTTGCTGTCCCATTAAT-GTTTC-TTT-CCCCCTAAGG-TTA-TTCTC-T---TCCAACCTTTG-GAACATTGCAGGTATCCTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTTATC--TTACTTAGT-TTT--TGCAGCTGT-TTCATG--ATGTGTCTTTTTCATCTCT-TGCAGCATCTTCCNNNNNNNN-NNNNNNNNNNNNNNNNNACAGTTGGTGCATGACAA-ACTATTATTGTGA-GTTTAGCAAA--TGCCGAGTTGTA-TCTGGCT-TTA--A-ATAATT-TCT-----CAT----TTACAGGTTTCCATTNNN--NNN--NNNNNNNNNN-NN--NNNNNNNNNN------NNNNNN--NNNN-NNNNNNNNNNNN-NNN-NNNNNN-NNNNNNNNNNNNNNNNNNNN----TAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTGACCC---ATTTCCAGTCCATC-TTG-TTCCACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC----ATTTCTNTTAA-GAGATC-A-ATTTTGTAGATTTCCATTTCTCT-A--ACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTTGGTT-GAAGGATATC---------CGTTCTCGGGCTGGCAACCATC--------TTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCTCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAA----TGTA---GGGT---------------TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|10 : TCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-TAAA-TGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAACTTT-TAATTG-AAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTTTTG--GGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-G-------TTTTG----CT---AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-
gi|11 : t----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCG-------CTCGA--C-CTTA-ACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGAG--AGTTCCA--GGTCAGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATGCTCTTA--CA-T---AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|13 : gGTATCC-ATATC------TGTAGTTTTATGT----GGCC---AAGTCAA------------TGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGtaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTTGGGT-TAAGGATGTC---------TACATTTGGGCTGTCAG-TGTCCGATTAGCTTT--CA-CTGAC---TTCCTGCATGA-GTCCA---GTT---------TCC------------Ttggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : TACTGGTTTCCATTCCA--TTAGGGCTTTTGTGA--C--TCTTT--TTGACAACATAACT-----CCTACTCCT-TCCTA-GTGTTTACCA-TCATCTCTTCCTGAGTAG------gg
gi|17 : tcTT--TGCAGCTGT-T-CATAGAATGTGTCTTTTTTGTCTTCTT-CAGCATTTT---CAT--------------------------TTGGTGCGTAACAA-Aagtgt
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGC
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAA---CCTCTTCTTTTGATCAGGTGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT---------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT--TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCC-----TTTTTATGTTT--CTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCT-ACAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGG-TTGCAAA-CTTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGTTGT-T-GATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATC---ACTAAT-G-TCTGCACCTTG-------GTTTGC-CACT---ACATCCAATAGACTACTTCCCC-ATC-TTCTGTTGATG-ATTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGAT--AATTCCA--TATTATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGCACCAA-GTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCATT-GTCG-TT-ACTAATATCTCTCA-----------TTCCCATTA--TGTTTT-TTC-CT---TA--G-ATAGTT-TA-T---TCCAGCCTT-G-G--CA-TG-AGTTC-ACTAATGTTAACAAGAC-TCATGGCGT-----GGTGTTTC-AT---CTAC-TAGT-TTT--TGCAGCTG--TTCATAGAATGT----------------------ATCTTCG---TCTTCTT-----------------CAGTTGGTGCGTAAGAA-ACTATTATTGAGA-GTTTGGCGAA--TGCCCAGTTGTA-TCTGGCT-TTA--A-GTAA-TCTTT-----CAC----TTACCGGTTTCCATTgta
gi|3 : tTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-T-CCAATTTTTTTTGTGAT-AACCA-TGTTCCTCTTTTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATCT-TTT----ACCT-CTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTTGCG--AATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTTTC--------TTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC---------TCTA--GACTCTTACATCTTGTAGAGAACCTCTCCA-TT-ACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTG--ACGACCA--GGTTAATTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT-------AACCAG-GTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCATT-GTCG-TTGATT-GT-TC-CACA--A-CCTTGTTTTCCCATGACTTGTTCC-TTT-TC-------A-TTA-TT-GA-TCGATCCTACTTT-G-G--CATTG-AGATCTCCT-ATGATGAT--GACA--ATAGCATGCCTAGGTATGT--TTT--CTG-TTGTT-TCC--TGAAG-TCT-CTCATAGAAC-C-TCTCTCTCCTCTTC-------ATCT--GC-ATCTTC-T-------------------GTAGGCGAGTAACAT-ACTATGGTGGTGG-GTTTCGTTTA--TTTGGAGTGGAA-TCTTGCTGTCA-----TAATTCTGT-----CGC----TGACAGGCTTCCA-TCCAATCAA--AC--ATGT--------------TTG------TGATTA--GGCCAACTCTTCTACTG-TGG-TGTTCG-TAATTTCTTCCTGAATAG-------ATTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTGCTCC---ACATACTGTCCATCGT-G-TTTCAC-----------AGAT--------------GCCGAGTATTTCT----A-G--------GC-T-GTATTTTTCCATCTCCTG-G--ATGACTTTTG-CAATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTTGGTT-TAAGGATGTC---------TACATTTGGGCTGTCAG-CGTCCGATTGGCTTTGAC--TGA-C---TTCCTGCATGA-GTCCAGTTTCCTGGTGGGTATCC------------ATCCTT-GTT----CCGG-----ATCTCC--TGGT--GGGTGTCCAT--CCTATTTTCCTCTGTGTTGGTTTCTGTAGCGGGTA---GGATTTTACGTGACAGGGGTGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACA
gi|4 : t-ATT-GT-TCCACCA--A-CCTTGTTTTCC-ATGACTTGTTAC-TTG-CC---T-----TCA-TT-GATT-GATCCTACTTT-G-C--AATTG-AGATCTCC-CATGATGAT----CATCATGTCATGCCCTAGTTTGT--GTT--CT--TTGGTGTTTCCTGAAGTTTTCTTCATAGAATCC-TCTCTT---TCTCC-T-CATCATC--GGCCATCTTC-T-------------------GTAGGCGAGTA--AGTACTATGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTAT-ACGAGATTCTGT-----C-----------GGCTTCCATTCAAT-CAA--ACATTTTTGG-TCTGTCTT-TGTTG------TGATTAAGAGCCAACTCCTCTATTATGTG-TGTTCATTCATTTCTTCATGA-TAGACTATATAA-GACTGTATG--ACCTGTAGCTAGATTTATACTTGCTCC---ACATCCTGTCCATCGT-GTTTTCAC-----------AGAT--------------GCCGAT-ATTTCT----A-GTGGTC-T-GTTT-----TTTTCCATCTCCTG-G--ATGACTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGG--GT---CCGGT--A-TGGCTTT--TGACAA-TGACTTCCTGCATGA-GTCCA---GTT---------TCCTGGTGGGTATAATCCATCCAATGTCAC--GGATCTATTTTCCTCGGTT--GG-TTCTGTAGC--------------G--GCCCGA--------GTAAAGGGGT---------------AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA----CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCC--TTTTTACATTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGG-TTGCGAA-CTTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGT-T-GATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTG-------TTTTG-----------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : GTTCTATCAAT-------TATTAAAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCATT-GGTG-TT-AC--AT-TATCCTA--ATCCTTGTTCCCCCATGA--TGTTTTATTTGCT---TA--GGTTG-CT-T--T---TCCAAACTT-CTG--TATTT-AAGTCTCCCCAGATCAGTAGCACATCATGATATG-------GTAT--ATCGTCTACT-GAC-TTT--TGTAG-TCT-TTCATTGGATA---CTTTTTCATCCTC---------CTCCGC-ATCTTC-T------------------GGTTGGTGAGTAGCAG-ACTACTGCAGTCA-ATTTGGCGAA--AGCTGAATTGTA-TTTTGCTGTTATTA-TTCATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCA--CAA--ACTTCTGTGAACC--TCTTCTGTTG------TAATTAT-GGCT-ACTCCTCTACTA-GCA-CGATCA-TCACACCTTCCTGAGTGG-------AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCCTTCACAT---GTCCATT-TTG-TTTCAC-----------------------T--TTC--CA---A---------G-GAGCTCGA-TCTT-ATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : ATCA--GGCC-ACTCCTCTACTA----------A-TCAT-----CCTGAGTA-------TAACATCTG-ATGTTACATG----TAG--TTGT-TTTTGTCC---ATTTCCAGTCCATC-T------------------------------TGT--TTCGCCG---ACTCCTT---A-GAGATCTA-GCTT-GTAGTTTTCCATTTCTCT-A--ACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTTGGTC-GAAGGAAATC---------CGTTCTCGGGCTATCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCGTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------AGTTGTTTTATAT----GGTA---GGAT---------------TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : TCTG-ATG--ACCTGATGTTAG--TTGC-TTTGATCC---ATTTCCAGTCCATC-T------------------------------TGT--TTCGCCG---ACTCCT----AAGAGATC-AAGTTT-GTAGTTTTCCATTTCTCT-A--ATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTTGGTC-GAAGGATATC---------CGTTCTCGGGCTGGCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGTTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTT-GCGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTTGT-T-GATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTG--------TTTGACCACT---ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--At
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 11 1 1 1 11 33333333 1 1 222 1 1 1 1 1 111 1 33 1 22 444444444 1 1 1 22222 1 1 11 1 1 11 111 1 1 1 11 1 111 111 22 222 11111 1111 2222222222 222222222 11 11 111 11 11 1 1 333333333 1 11 11 1 1 11 2222 111 66666666666666666666666 111111 11 4444 2222222 1111 9999999999999999999999999999999999999999999999999999999999 11 1 3333333 333333333333 11 11 44444444444444444444444 111 1 22222222 33333333 11 111 2222222222222222222222222222222222222222222222222222222222222 111 1111 1 222222222 4444444 1111111111111 1 222222222222222 333333333333 2222222222222 11 333333333 1111 111 555555555555555 111 1
lowQualScore : 1 5 1 5 999999 5 88 5 5 1 5 88 1 55555555 5 1 5 111 1 1 5 5 1 1 5 6 3 3 333 3 44 6 2 00 0 11 666666666 3 3 3 99999 3 3 6 88 7 77 3 3 3 11 444 0 2 2 0 0 0 2 0 99 66 11 999 6 6 1 6 6 6 3 111 6 99 2 1 99 111 7 88 77 1 2 00 6 6 999 3 2 5 1 0 888 5 1 77 5 44444 0000 0 2 0 555 1111111111 999999999 6 88 22 5 0 0 44 1 4 5 111 1 11 0 33 0 1 1 0 6 0 0 3 666666666 0 11 1 0 33 11 0 0 8 66 8 3 4444 666 8 8 11111111111111111111111 1 777777 0 8 1 0 88 1 44 11 2222 1 6666666 0000 8 99 1 9 666 1111111111111111111111111111111111111111111111111111111111 0 2 2 2 0 1 8 1 1 11 8 0 1 8 0 0 0000000 0 3 1 111111111111 1 3 99 11 8 1 11111111111111111111111 666 3 6 0 44444444 6 7 2 99999999 6 6 99 11 99 6 1 111 1 2 3 2222222222222222222222222222222222222222222222222222222222222 3 1 999 77 1 1111 1 2 3 3 5 0 1 1 6 2 1 99 666666666 6 1111111 7777777777777 1 5 888888888888888 444444444444 8888888888888 11 66 0 6 888888888 4444 111 333333333333333 5 000 2 0 2
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . ... . .. . . .. . .. ......... . . . ..... . . . .. . .. . . . .. ... . . . . . . . . .. .. .. ... . . . . . . . ... . .. . . .. ... . .. .. . . .. . . ... . . . . . ... . . .. . ..... .... . . . ... .......... ......... . .. .. . . . .. . . . ... . .. . .. . . . . . . . . ......... . .. . . .. .. . . . .. . . .... ... . . ....................... . ...... . . . . .. . .. .. .... . ....... .... . .. . . ... .......................................................... . . . . . . . . . .. . . . . . . ....... . . . ............ . . .. .. . . ....................... ... . . . ........ . . . ........ . . .. .. .. . . ... . . . ............................................................. . . ... .. . .... . . . . . . . . . . . .. ......... . ....... ............. . . ............... ............ ............. .. .. . . ......... .... ... ............... . ... . . .
lowQualScore : 0 5 0 0 000000 0 00 0 0 0 5 00 0 55555555 5 0 0 000 0 0 5 0 0 0 0 7 3 3 777 3 00 7 0 77 7 77 000000000 3 3 3 00000 3 3 7 33 3 33 3 3 2 88 000 0 5 5 2 0 0 5 8 22 44 00 222 0 7 7 7 7 7 5 777 7 22 5 0 22 777 3 33 77 0 5 22 7 7 000 2 2 7 9 7 333 7 7 99 7 33333 6666 2 2 2 111 8888888888 666666666 4 00 55 0 2 2 44 4 0 7 777 0 00 8 88 2 0 2 2 5 8 0 2 000000000 0 22 0 2 88 22 0 0 0 88 0 8 6666 444 0 0 44444444444444444444444 4 000000 8 0 4 8 88 4 22 66 0000 0 6666666 4444 0 22 0 3 888 5555555555555555555555555555555555555555555555555555555555 7 5 5 2 6 0 0 0 4 00 2 6 4 0 6 0 4444444 8 2 0 666666666666 5 3 00 00 0 0 66666666666666666666666 777 3 7 2 55555555 7 5 8 11111111 4 7 22 22 22 7 0 777 0 5 7 5555555555555555555555555555555555555555555555555555555555555 5 5 333 77 0 8888 5 5 3 7 2 7 0 0 7 2 0 22 777777777 7 8888888 8888888888888 0 0 000000000000000 222222222222 0000000000000 00 44 8 7 333333333 2222 777 333333333333333 7 000 3 7 1
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TA-T-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGT-TCTTTTTCGTCTTCT-----ATCTTCGCCATCTTCT------------------AGTTGGCGCGTAACANACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-A-CTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCC---ACNTCCAGTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG--A---TTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TA-T-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGT-TCTTTTTCGTCTTCT-CA-CATCTTCGCCATCTTCT------------------AGTTGGCGCGTAACAAACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-A-CTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCC---ACNTCCAGTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG--A---TTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGACAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAA-AAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTCC--TAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTGC-AGGTTTCGTC-TGAACATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCATAAA-AGATGGT-CCACCAA--------CACCAA-GTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTTAT-TCTCCCATTC-CTTTGCTGTCCCATTAAT-GTTTC-TTT-CCCCCTAAGG-TTA-TTCTC-T---TCCAACCTTTG-GAACATTGCAGGTATCCTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTTATC--TTACTTAGT-TTT--TGCAGCTGT-TTCATG--ATGTGTCTTTTTCATCTCTTGCAGCATCTTCCNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTGCATGACAAACTATTATTGTGA-GTTTAGCAAA--TGCCGAGTTGTA-TCTGGCT-TTA--A-ATAATT-TCT-----CAT----TTACAGGTTTCCATTNNN--NNN--NNNNNNNNNN-NN--NNNNNNNNNN------NNNNNN--NNNN-N-NNNNNNNNNNN-NNN-NNNNNN-NNNNNNNNNNNNNNNNNNNN----TAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTGACCC---ATTTCCAGTCCATC-TTG-TTCCACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC---A---TTTCTNTTAA-GAGATC-A-ATTTTGTAGATTTCCATTTCTCT-A--ACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTTGGTT-GAAGGATATC---------CGTTCTCGGGCTGGCAACCATC--------TTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCTCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAA----TGTA---GGGT---------------TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|10 : TCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-TAAA-TGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAACTTT-TAATTG-AAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTTTTG--GGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-G-------TTTTG----CT---AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-
gi|11 : t----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCG-------CTCGA--C-CTTA-ACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGAG--AGTTCCA--GGTCAGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATGCTCTTA--CA-T---AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|13 : gGTATCC-ATATC------TGTAGTTTTATGT----GGCC---AAGTCAA------------TGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGtaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTTGGGT-TAAGGATGTC---------TACATTTGGGCTGTCAG-TGTCCGATTAGCTTT--CA-CTGAC---TTCCTGCATGA-GTCCA---GTT---------TCC------------Ttggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : TACTGGTTTCCATTCCA--TTAGGGCTTTTGTGA--C--TCTTT--TTGACAACATAACT-----CCTA-CTCCT-TCCTA-GTGTTTACCA-TCATCTCTTCCTGAGTAG------gg
gi|17 : tcTT--TGCAGCTGT-T-CATAGAATGTGTCTTTTTTGTCTTCT---------TCAGCATTTTC-------------------ATTTGGTGCGTAACAAAagtgt
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGC
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAA---CCTCTTCTTTTGATCAGGTGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT---------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT--TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCC-----TTTTTATGTTT--CTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCT-ACAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGG-TTGCAAA-CTTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGTTGT-T-GATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATC---ACTAAT-G-TCTGCACCTTG-------GTTTGC-CACT---ACATCCAATAGACTACTTCCCC-ATC-TTCTGTTGATG-ATTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGAT--AATTCCA--TATTATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGCACCAA-GTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCATT-GTCG-TT-ACTAATATCTCTCA-----------TTCCCATTA--TGTTTT-TTC-CT---TA--G-ATAGTT-TA-T---TCCAGCCTT-G-G--CA-TG-AGTTC-ACTAATGTTAACAAGAC-TCATGGCGT-----GGTGTTTC-AT---CTAC-TAGT-TTT--TGCAGCTG--TTCATAGAATGT---------------------ATCTTCGTCTTCTTC-------------------AGTTGGTGCGTAAGAAACTATTATTGAGA-GTTTGGCGAA--TGCCCAGTTGTA-TCTGGCT-TTA--A-GTAA-TCTTT-----CAC----TTACCGGTTTCCATTgta
gi|3 : tTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-T-CCAATTTTTTTTGTGAT-AACCA-TGTTCCTCTTTTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATCT-TTT----ACCT-CTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTTGCG--AATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTTTC--------TTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC---------TCTA--GACTCTTACATCTTGTAGAGAACCTCTCCA-TT-ACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTG--ACGACCA--GGTTAATTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT-------AACCAG-GTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCATT-GTCG-TTGATT-GT-TC-CACA--A-CCTTGTTTTCCCATGACTTGTTCC-TTT-TC-------A-TTA-TT-GA-TCGATCCTACTTT-G-G--CATTG-AGATCTCCT-ATGATGAT--GACA--ATAGCATGCCTAGGTATGT--TTT--CTG-TTGTT-TCC--TGAAG-TCT-CTCATAGAAC-C-TCTCTCTCCTCTTC------ATCT--GC-ATCTTCT-------------------GTAGGCGAGTAACATACTATGGTGGTGG-GTTTCGTTTA--TTTGGAGTGGAA-TCTTGCTGTCAT-A----ATTCTGT-----CGC----TGACAGGCTTCCAT-CCAATCAA--AC--ATGT--------------TTG------TGATTA--GGCC-AACTCTTCTACTG-TGG-TGTTCG-TAATTTCTTCCTGAATAG-------ATTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTGCTCC---ACATACTGTCCATCGT-G-TTTCAC-----------AGAT--------------GCCG--AGTATTTCT----A-G--------GCT--GTATTTTTCCATCTCCTG-G--ATGACTTTTGC-AATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTTGGTT-TAAGGATGTC---------TACATTTGGGCTGTCAG-CGTCCGATTGGCTTTGAC--TGA-C---TTCCTGCATGA-GTCCAGTTTCCTGGTGGGTATCC------------ATCCTT-GTT----CCGG-----ATCTCC--TGGT--GGGTGTCCAT--CCTATTTTCCTCTGTGTTGGTTTCTGTAGCGGGTA---GGATTTTACGTGACAGGGGTGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACA
gi|4 : t-ATT-GT-TCCACCA--A-CCTTGTTTTCC-ATGACTTGTTAC-TTG-CC---T-----TCA-TT-GATT-GATCCTACTTT-G-C--AATTG-AGATCTCC-CATGATGAT----CATCATGTCATGCCCTAGTTTGT--GTT--CT--TTGGTGTTTCCTGAAGTTTTCTTCATAGAATCC-TCTCTT---TCTCCT-CATCATC--GGCCATCTTCT-------------------GTAGGCGAGTAA-GTACTATGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTAT-ACGAGATTCTGT-----C-----------GGCTTCCATTCAAT-CAA--ACATTTTTGG-TCTGTCTT-TGTTG------TGATTAAGAGCCAA-CTCCTCTATTATGTG-TGTTCATTCATTTCTTCATGA-TAGACTATATAA-GACTGTATG--ACCTGTAGCTAGATTTATACTTGCTCC---ACATCCTGTCCATCGT-GTTTTCAC-----------AGAT--------------GCCGATA---TTTCT----A-GTGGTC-T-GTTT-----TTTTCCATCTCCTG-G--ATGACTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGG--GT---CCGGT--A-TGGCTTT--TGACAA-TGACTTCCTGCATGA-GTCCA---GTT---------TCCTGGTGGGTATAATCCATCCAATGTCAC--GGATCTATTTTCCTCGGTT--GG-TTCTGTAGC--------------G--GCCCGA--------GTAAAGGGGT---------------AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA----CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCC--TTTTTACATTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGG-TTGCGAA-CTTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGT-T-GATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTG-------TTTTG-----------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : GTTCTATCAAT-------TATTAAAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCATT-GGTG-TT-AC--AT-TATCCTA--ATCCTTGTTCCCCCATGA--TGTTTTATTTGCT---TA--GGTTG-CT-T--T---TCCAAACTT-CTG--TATTT-AAGTCTCCCCAGATCAGTAGCACATCATGATATG-------GTAT--ATCGTCTACT-GAC-TTT--TGTAG-TCT-TTCATTGGATA---CTTTTTCATCCTC--------CTCCGC-ATCTTCT------------------GGTTGGTGAGTAGCAGACTACTGCAGTCA-ATTTGGCGAA--AGCTGAATTGTA-TTTTGCTGTTATTA-TTCATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCA--CAA--ACTTCTGTGAACC--TCTTCTGTTG------TAATTAT-GGCT-A-CTCCTCTACTA-GCA-CGATCA-TCACACCTTCCTGAGTGG-------AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCCTTCACAT---GTCCATT-TTG-TTTCAC-----------------------T--TTC--CA--A------------G-GAGCTCGA-TCTT-ATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : ATCA--GGCC-A-CTCCTCTACTA----------A-TCAT-----CCTGAGTA-------TAACATCTG-ATGTTACATG----TAG--TTGT-TTTTGTCC---ATTTCCAGTCCATC-T------------------------------TGT--TTCGCCG--A---CTCCTT---A-GAGATCTA-GCTT-GTAGTTTTCCATTTCTCT-A--ACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTTGGTC-GAAGGAAATC---------CGTTCTCGGGCTATCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCGTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------AGTTGTTTTATAT----GGTA---GGAT---------------TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : TCTG-ATG--ACCTGATGTTAG--TTGC-TTTGATCC---ATTTCCAGTCCATC-T------------------------------TGT--TTCGCCG--A---CTCCT----AAGAGATC-AAGTTT-GTAGTTTTCCATTTCTCT-A--ATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTTGGTC-GAAGGATATC---------CGTTCTCGGGCTGGCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGTTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTT-GCGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTTGT-T-GATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTG--------TTTGACCACT---ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--At
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 11 1 1 1 11 33333333 1 1 222 1 1 1 1 1 111 1 33 1 22 444444444 1 1 1 22222 1 1 11 1 1 11 111 1 1 1 11 1 111 111 22 222 11111 1111 2222222222 222222222 11 11 111 11 11 1 1 333333333 1 11 11 1 1 11 2222 111 66666666666666666666666 111111 11 4444 2222222 1111 44444444444444444444444 1111 66666666666666666666 11 1 33333 22222222222222 11 11 44444444444444444444444 111 2 22222222 33333333 11 11111111111111111111111111111111111111111111111111111111111 111 1111 1 222222222 4444444 1111111111111 1 222222222222222 333333333333 2222222222222 11 333333333 1111 111 555555555555555 111 1
lowQualScore : 1 5 1 5 999999 5 88 5 5 1 5 88 1 55555555 5 1 5 111 1 1 5 5 1 1 5 6 3 3 333 3 44 6 2 00 0 11 666666666 3 3 3 99999 3 3 6 88 7 77 3 3 3 11 444 0 2 2 0 0 0 2 0 99 66 11 999 6 6 1 6 6 6 3 111 6 99 2 1 99 111 7 88 77 1 2 00 6 6 999 3 2 5 1 0 888 5 1 77 5 44444 0000 0 2 0 555 1111111111 999999999 6 88 22 5 0 0 44 1 4 5 111 1 11 0 33 0 1 1 0 6 0 0 3 666666666 0 11 1 0 33 11 0 0 8 66 8 3 4444 666 8 8 11111111111111111111111 1 777777 0 8 1 0 88 1 44 11 2222 1 6666666 0000 8 99 1 9 666 77777777777777777777777 1 0000 88888888888888888888 0 2 2 1 0 1 8 1 1 11 8 0 1 8 0 0 55555 0 3 33333333333333 1 3 99 11 8 1 11111111111111111111111 666 0 0 44444444 6 7 2 99999999 6 6 99 11 99 6 1 1 6 6 6 55555555555555555555555555555555555555555555555555555555555 3 1 999 77 1 1111 1 6 3 3 5 0 1 1 6 2 1 99 666666666 6 1111111 7777777777777 1 5 888888888888888 444444444444 8888888888888 11 66 0 6 888888888 4444 111 333333333333333 5 000 2 0 2
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . ... . .. . . .. . .. ......... . . . ..... . . . .. . .. . . . .. ... . . . . . . . . .. .. .. ... . . . . . . . ... . .. . . .. ... . .. .. . . .. . . ... . . . . . ... . . .. . ..... .... . . . ... .......... ......... . .. .. . . . .. . . . ... . .. . .. . . . . . . . . ......... . .. . . .. .. . . . .. . . .... ... . . ....................... . ...... . . . . .. . .. .. .... . ....... .... . .. . . ... ....................... . .... .................... . . . . . . . . . .. . . . . . . ..... . . .............. . . .. .. . . ....................... ... . . ........ . . . ........ . . .. .. .. . . . . . . ........................................................... . . ... .. . .... . . . . . . . . . . . .. ......... . ....... ............. . . ............... ............ ............. .. .. . . ......... .... ... ............... . ... . . .
lowQualScore : 0 5 0 0 000000 0 00 0 0 0 5 00 0 55555555 5 0 0 000 0 0 5 0 0 0 0 7 3 3 777 3 00 7 0 77 7 77 000000000 3 3 3 00000 3 3 7 33 3 33 3 3 2 88 000 0 5 5 2 0 0 5 8 22 44 00 222 0 7 7 7 7 7 5 777 7 22 5 0 22 777 3 33 77 0 5 22 7 7 000 2 2 7 9 7 333 7 7 99 7 33333 6666 2 2 2 111 8888888888 666666666 4 00 55 0 2 2 44 4 0 7 777 0 00 8 88 2 0 2 2 5 8 0 2 000000000 0 22 0 2 88 22 0 0 0 88 0 8 6666 444 0 0 44444444444444444444444 4 000000 8 0 4 8 88 4 22 66 0000 0 6666666 4444 0 22 0 3 888 33333333333333333333333 7 7777 00000000000000000000 7 5 5 0 6 0 0 0 4 00 2 6 4 0 6 0 44444 8 2 66666666666666 5 3 00 00 0 0 66666666666666666666666 777 0 2 55555555 7 5 8 11111111 4 7 22 22 22 7 0 0 7 7 7 88888888888888888888888888888888888888888888888888888888888 5 5 333 77 0 8888 5 7 3 7 2 7 0 0 7 2 0 22 777777777 7 8888888 8888888888888 0 0 000000000000000 222222222222 0000000000000 00 44 8 7 333333333 2222 777 333333333333333 7 000 3 7 1
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TA-T-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGC-TCTTTTTCGTCTTC------ATCTTC-GCCATCTTCT------------------AGTTGGCGCGTAACANACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTA-TA-GTAATTCT-----NTCGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTG-ACC--TCTTCTGTTG------TGATTA--GGCC-ACTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCACTTC-CA-GTCCA-TC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG---ATTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TA-T-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGT-TCTTTTTCGTCTTCT-----ATCTTC-GCCATCTTCT------------------AGTTGGCGCGTAACANACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTA-TA-GTAATTCT-----NTCGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTG-ACC--TCTTCTGTTG------TGATTA--GGCC-ACTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCACNTC-CA-GTCCA-TC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG---ATTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGACAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAA-AAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTCC--TAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTGC-AGGTTTCGTC-TGAACATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCATAAA-AGATGGT-CCACCAA--------CACCAA-GTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTTAT-TCTCCCATTC-CTTTGCTGTCCCATTAAT-GTTTC-TTT-CCCCCTAAGG-TTA-TTCTC-T---TCCAACCTTTG-GAACATTGCAGGTATCCTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTTATC--TTACTTAGT-TTT--TGCAGCTGT-TTCATG--ATGTGTCTTTTTCATCTCTTGCAGCATCTTC-CNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTGCATGACAAACTATTATTGTGA-GTTTAGCAAA--TGCCGAGTTGTA-TCTGGCT-TTA--A-ATAATT-T-----CTCAT----TTACAGGTTTCCATTNNN--NNN--NNNNNNNNN-NNN--NNNNNNNNNN------NNNNNN--NNNN-NNNNNNNNNNNN-NNN-NNNNNN-NNNNNNNNNNNNNNNNNNNN----TAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTGACCCATTTC-CA-GTCCA-TC-TTG-TTCCACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC----ATTTCTNTTAA-GAGATC-A-ATTTTGTAGATTTCCATTTCTCT-A--ACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTTGGTT-GAAGGATATC---------CGTTCTCGGGCTGGCAACCATC--------TTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCTCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAA----TGTA---GGGT---------------TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|10 : TCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-TAAA-TGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAACTTT-TAATTG-AAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTTTTG--GGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-G-------TTTTG----CT---AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-
gi|11 : t----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCG-------CTCGA--C-CTTA-ACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGAG--AGTTCCA--GGTCAGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATGCTCTTA--CA-T---AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|13 : gGTATCC-ATATC------TGTAGTTTTATGT----GGCC---AAGTCAA------------TGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGtaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTTGGGT-TAAGGATGTC---------TACATTTGGGCTGTCAG-TGTCCGATTAGCTTT--CA-CTGAC---TTCCTGCATGA-GTCCA---GTT---------TCC------------Ttggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : TACTGGTTTCCATTCCA--TTAGGGCTTTTGTG-A-C--TCTTT--TTGACAACATAACT-----CCTACTCCT-TCCTA-GTGTTTACCA-TCATCTCTTCCTGAGTAG------gg
gi|17 : tcTT--TGCAGCTGT-T-CATAGAATGTGTCTTTTTTGTCT---------TCTTC-AGCATTTTC-------------------ATTTGGTGCGTAACAAAagtgt
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGC
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAA---CCTCTTCTTTTGATCAGGTGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT---------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT--TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCC-----TTTTTATGTTT--CTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCT-ACAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGG-TTGCAAA-CTTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGTTGT-T-GATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATC---ACTAAT-G-TCTGCACCTTG-------GTTTGC-CACT---ACATCCAATAGACTACTTCCCC-ATC-TTCTGTTGATG-ATTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGAT--AATTCCA--TATTATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGCACCAA-GTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCATT-GTCG-TT-ACTAATATCTCTCA-----------TTCCCATTA--TGTTTT-TTC-CT---TA--G-ATAGTT-TA-T---TCCAGCCTT-G-G--CA-TG-AGTTC-ACTAATGTTAACAAGAC-TCATGGCGT-----GGTGTTTC-AT---CTAC-TAGT-TTT--TGCAGCTG--TTCATAGAATG----------------T-----ATCTTC-GTCTTCTTC-------------------AGTTGGTGCGTAAGAAACTATTATTGAGA-GTTTGGCGAA--TGCCCAGTTGTA-TCTGGCT-TTA--A-GTAA-TCT-----TTCAC----TTACCGGTTTCCATTgta
gi|3 : tTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-T-CCAATTTTTTTTGTGAT-AACCA-TGTTCCTCTTTTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATCT-TTT----ACCT-CTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTTGCG--AATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTTTC--------TTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC---------TCTA--GACTCTTACATCTTGTAGAGAACCTCTCCA-TT-ACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTG--ACGACCA--GGTTAATTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT-------AACCAG-GTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCATT-GTCG-TTGATT-GT-TC-CACA--A-CCTTGTTTTCCCATGACTTGTTCC-TTT-TC-------A-TTA-TT-GA-TCGATCCTACTTT-G-G--CATTG-AGATCTCCT-ATGATGAT--GACA--ATAGCATGCCTAGGTATGT--TTT--CTG-TTGTT-TCC--TGAAG-TCT-CTCATAGAAC-C-TCTCTCTCCTCTTC------ATCT---G-CATCTTCT-------------------GTAGGCGAGTAACATACTATGGTGGTGG-GTTTCGTTTA--TTTGGAGTGGAA-TCTTGCTGTCA-----TAATTCT-----GTCGC----TGACAGGCTTCCA-TCCAATCAA--AC--ATGT--------------TTG------TGATTA--GGCCAACTCTTCTACTG-TGG-TGTTCG-TAATTTCTTCCTGAATAG-------ATTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTGCTCCACATA-CT-GTCCA-TCGT-G-TTTCAC-----------AGAT--------------GCCGAGTATTTCT----A-G--------GC-T-GTATTTTTCCATCTCCTG-G--ATGACTTTTG-CAATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTTGGTT-TAAGGATGTC---------TACATTTGGGCTGTCAG-CGTCCGATTGGCTTTGAC--TGA-C---TTCCTGCATGA-GTCCAGTTTCCTGGTGGGTATCC------------ATCCTT-GTT----CCGG-----ATCTCC--TGGT--GGGTGTCCAT--CCTATTTTCCTCTGTGTTGGTTTCTGTAGCGGGTA---GGATTTTACGTGACAGGGGTGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACA
gi|4 : t-ATT-GT-TCCACCA--A-CCTTGTTTTCC-ATGACTTGTTAC-TTG-CC---T-----TCA-TT-GATT-GATCCTACTTT-G-C--AATTG-AGATCTCC-CATGATGAT----CATCATGTCATGCCCTAGTTTGT--GTT--CT--TTGGTGTTTCCTGAAGTTTTCTTCATAGAATCC-TCTCTTTC-TCCTC------ATCATCGGCCATCTTCT-------------------GTAGGCGAGTAA-GTACTATGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTA-TACGAGATTCT-----GTC-----------GGCTTCCATTCAAT-CAA--ACATTTTTG-GTCTGTCTT-TGTTG------TGATTAAGAGCCAACTCCTCTATTATGTG-TGTTCATTCATTTCTTCATGA-TAGACTATATAA-GACTGTATG--ACCTGTAGCTAGATTTATACTTGCTCCACATC-CT-GTCCA-TCGT-GTTTTCAC-----------AGAT--------------GCCGAT-ATTTCT----A-GTGGTC-T-GTTT-----TTTTCCATCTCCTG-G--ATGACTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGG--GT---CCGGT--A-TGGCTTT--TGACAA-TGACTTCCTGCATGA-GTCCA---GTT---------TCCTGGTGGGTATAATCCATCCAATGTCAC--GGATCTATTTTCCTCGGTT--GG-TTCTGTAGC--------------G--GCCCGA--------GTAAAGGGGT---------------AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA----CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCC--TTTTTACATTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGG-TTGCGAA-CTTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGT-T-GATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTG-------TTTTG-----------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : GTTCTATCAAT-------TATTAAAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCATT-GGTG-TT-AC--AT-TATCCTA--ATCCTTGTTCCCCCATGA--TGTTTTATTTGCT---TA--GGTTG-CT-T--T---TCCAAACTT-CTG--TATTT-AAGTCTCCCCAGATCAGTAGCACATCATGATATG-------GTAT--ATCGTCTACT-GAC-TTT--TGTAG-TCT-TTCATTGGATA---CTTTTTCATCCTC--------CTCC-GC-ATCTTCT------------------GGTTGGTGAGTAGCAGACTACTGCAGTCA-ATTTGGCGAA--AGCTGAATTGTA-TTTTGCTGTTATTA-TTCATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCA--CAA--ACTTCTGTGAACC--TCTTCTGTTG------TAATTAT-GGCT-ACTCCTCTACTA-GCA-CGATCA-TCACACCTTCCTGAGTGG-------AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTC--CTTCACATGTCCATTT-T-G-TTTCAC-----------------------T--TT--CCA---A---------G-GAGCTCGA-TCTT-ATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : ATCA--GGCC-ACTCCTCTACTA----------A-TCAT-----CCTGAGTA-------TAACATCTG-ATGTTACATG----TAG--TTGT-TTTTGTCCATTTC-CA-GTCCA-TC-T------------------------------TGT--TTCGCCG---ACTCCTT---A-GAGATCTA-GCTT-GTAGTTTTCCATTTCTCT-A--ACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTTGGTC-GAAGGAAATC---------CGTTCTCGGGCTATCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCGTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------AGTTGTTTTATAT----GGTA---GGAT---------------TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : TCTG-ATG--ACCTGATGTTAG--TTGC-TTTGATCCATTTC-CA-GTCCA-TC-T------------------------------TGT--TTCGCCG---ACTCCT----AAGAGATC-AAGTTT-GTAGTTTTCCATTTCTCT-A--ATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTTGGTC-GAAGGATATC---------CGTTCTCGGGCTGGCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGTTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTT-GCGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTTGT-T-GATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTG--------TTTGACCACT---ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--At
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 11 1 1 1 11 33333333 1 1 222 1 1 1 1 1 111 1 33 1 22 444444444 1 1 1 22222 1 1 11 1 1 11 111 1 1 1 11 1 111 111 22 222 11111 1111 2222222222 222222222 11 11 111 11 11 1 1 333333333 1 11 11 1 1 11 2222 111 6666666666666666666666 111111 11 4444 2222222 1111 11111 2222222222222222222222 111 66666666666666666666 11 1 3333333 333333333333 11 11 44444444444444444444444 111 1 22222222 33333333 11 2222222222222222222222222222222222222222222222222222222222222 111 1111 1 222222222 4444444 1111111111111 1 222222222222222 333333333333 2222222222222 11 333333333 1111 111 555555555555555 111 1
lowQualScore : 1 5 1 5 999999 5 88 5 5 1 5 88 1 55555555 5 1 5 111 1 1 5 5 1 1 5 6 3 3 333 3 44 6 2 00 0 11 666666666 3 3 3 99999 3 3 6 88 7 77 3 3 3 11 444 0 2 2 0 0 0 2 0 99 66 11 999 6 6 1 6 6 6 3 111 6 99 2 1 99 111 7 88 77 1 2 00 6 6 999 3 2 5 1 0 888 5 1 77 5 44444 0000 0 2 0 555 1111111111 999999999 6 88 22 5 0 0 44 1 4 5 111 1 11 0 33 0 1 1 0 6 0 0 3 666666666 0 11 1 0 33 11 0 0 8 66 8 3 4444 666 8 8 1111111111111111111111 1 777777 0 8 1 0 88 1 44 11 2222 1 6666666 0000 8 99 1 55555 9999999999999999999999 3 1 333 88888888888888888888 0 2 2 1 0 1 8 1 1 11 8 0 1 8 0 0 0000000 0 3 1 111111111111 1 3 99 11 8 1 11111111111111111111111 666 3 6 0 44444444 6 7 2 99999999 6 6 99 11 99 6 1 2 6 6 2222222222222222222222222222222222222222222222222222222222222 3 1 999 77 1 1111 1 2 3 3 5 0 1 1 6 2 1 99 666666666 6 1111111 7777777777777 1 5 888888888888888 444444444444 8888888888888 11 66 0 6 888888888 4444 111 333333333333333 5 000 2 0 2
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . ... . .. . . .. . .. ......... . . . ..... . . . .. . .. . . . .. ... . . . . . . . . .. .. .. ... . . . . . . . ... . .. . . .. ... . .. .. . . .. . . ... . . . . . ... . . .. . ..... .... . . . ... .......... ......... . .. .. . . . .. . . . ... . .. . .. . . . . . . . . ......... . .. . . .. .. . . . .. . . .... ... . . ...................... . ...... . . . . .. . .. .. .... . ....... .... . .. . ..... ...................... . . ... .................... . . . . . . . . . .. . . . . . . ....... . . . ............ . . .. .. . . ....................... ... . . . ........ . . . ........ . . .. .. .. . . . . . ............................................................. . . ... .. . .... . . . . . . . . . . . .. ......... . ....... ............. . . ............... ............ ............. .. .. . . ......... .... ... ............... . ... . . .
lowQualScore : 0 5 0 0 000000 0 00 0 0 0 5 00 0 55555555 5 0 0 000 0 0 5 0 0 0 0 7 3 3 777 3 00 7 0 77 7 77 000000000 3 3 3 00000 3 3 7 33 3 33 3 3 2 88 000 0 5 5 2 0 0 5 8 22 44 00 222 0 7 7 7 7 7 5 777 7 22 5 0 22 777 3 33 77 0 5 22 7 7 000 2 2 7 9 7 333 7 7 99 7 33333 6666 2 2 2 111 8888888888 666666666 4 00 55 0 2 2 44 4 0 7 777 0 00 8 88 2 0 2 2 5 8 0 2 000000000 0 22 0 2 88 22 0 0 0 88 0 8 6666 444 0 0 4444444444444444444444 4 000000 8 0 4 8 88 4 22 66 0000 0 6666666 4444 0 22 0 33333 0000000000000000000000 2 7 888 00000000000000000000 7 5 5 0 6 0 0 0 4 00 2 6 4 0 6 0 4444444 8 2 0 666666666666 5 3 00 00 0 0 66666666666666666666666 777 3 7 2 55555555 7 5 8 11111111 4 7 22 22 22 7 0 2 7 7 5555555555555555555555555555555555555555555555555555555555555 5 5 333 77 0 8888 5 5 3 7 2 7 0 0 7 2 0 22 777777777 7 8888888 8888888888888 0 0 000000000000000 222222222222 0000000000000 00 44 8 7 333333333 2222 777 333333333333333 7 000 3 7 1
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TAT-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGC-TCTTTTTCGTCTT------CATCTTCG-CCATCTTCT------------------AGTTGGCGCGTAACANACTATTATNGTGAG-TTTNGCGAAT--GCCGAGTTGTAT-CTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-A-CTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCATTTC-CA-GTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG--A---TTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TAT-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGC-TCTTTTTCGTCTT------CATCTTCG-CCATCTTCT------------------AGTTGGCGCGTAACANACTATTATNGTGAG-TTTNGCGAAT--GCCGAGTTGTAT-CTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-A-CTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCACTTC-CA-GTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG--A---TTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGACAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAA-AAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTCC--TAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTGC-AGGTTTCGTC-TGAACATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCATAAA-AGATGGT-CCACCAA--------CACCAA-GTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTTAT-TCTCCCATTC-CTTTGCTGTCCCATTAAT-GTTTC-TTT-CCCCCTAAGG-TTA-TTCTCT---TCCAACCTTTG-GAACATTGCAGGTATCCTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTTATC--TTACTTAGT-TTT--TGCAGCTGT-TTCATG--ATGTGTCTTTTTCATCTCTTGCAGCATCTTCC-NNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTGCATGACAAACTATTATTGTGAG-TTTAGCAAAT--GCCGAGTTGTAT-CTGGCT-TTA--A-ATAATT-TCT-----CAT----TTACAGGTTTCCATTNNN--NNN--NNNNNNNNNN-NN--NNNNNNNNNN------NNNNNN--NNNN-N-NNNNNNNNNNN-NNN-NNNNNN-NNNNNNNNNNNNNNNNNNNN----TAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTGACCCATTTC-CA-GTCCATC-TTG-TTCCACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC---A---TTTCTNTTAA-GAGATC-A-ATTTTGTAGATTTCCATTTCTCT-A--ACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTTGGTT-GAAGGATATC---------CGTTCTCGGGCTGGCAACCATC--------TTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCTCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAA----TGTA---GGGT---------------TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|10 : TCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-TAAA-TGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAACTTT-TAATTG-AAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTTTTG--GGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-G-------TTTTG----CT---AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-
gi|11 : t----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCG-------CTCGA--C-CTTA-ACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGAG--AGTTCCA--GGTCAGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATGCTCTTA--CA-T---AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|13 : gGTATCC-ATATC------TGTAGTTTTATGT----GGCC---AAGTCAA------------TGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGtaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTTGGGT-TAAGGATGTC---------TACATTTGGGCTGTCAG-TGTCCGATTAGCTTT--CA-CTGAC---TTCCTGCATGA-GTCCA---GTT---------TCC------------Ttggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : TACTGGTTTCCATTCCA--TTAGGGCTTTTGTGA--C--TCTTT--TTGACAACATAACT-----CCTA-CTCCT-TCCTA-GTGTTTACCA-TCATCTCTTCCTGAGTAG------gg
gi|17 : tcTT--TGCAGCTG--TTCATAGAATGTGTCTTTTTTGTCT---------TCTTCA-GCATTTTC-------------------ATTTGGTGCGTAACAAAagtgt
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGC
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAA---CCTCTTCTTTTGATCAGGTGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT---------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT--TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCC-----TTTTTATGTTT--CTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCT-ACAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGG-TTGCAAA-CTTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGTTGT-T-GATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATC---ACTAAT-G-TCTGCACCTTG-------GTTTGC-CACT---ACATCCAATAGACTACTTCCCC-ATC-TTCTGTTGATG-ATTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGAT--AATTCCA--TATTATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGCACCAA-GTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCATT-GTCG-TT-ACTAATATCTCTCA-----------TTCCCATTA--TGTTTT-TTC-CT---TA--G-ATAGTT-TAT---TCCAGCCTT-G-G--CA-TG-AGTTC-ACTAATGTTAACAAGAC-TCATGGCGT-----GGTGTTTC-AT---CTAC-TAGT-TTT--TGCAGCTG--TTCATAGAATG---------------------TATCTTCG-TCTTCTTC-------------------AGTTGGTGCGTAAGAAACTATTATTGAGAG-TTTGGCGAAT--GCCCAGTTGTAT-CTGGCT-TTA--A-GTAA-TCTTT-----CAC----TTACCGGTTTCCATTgta
gi|3 : tTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-T-CCAATTTTTTTTGTGAT-AACCA-TGTTCCTCTTTTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATCT-TTT----ACCT-CTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTTGCG--AATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTTTC--------TTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC---------TCTA--GACTCTTACATCTTGTAGAGAACCTCTCCA-TT-ACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTG--ACGACCA--GGTTAATTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT-------AACCAG-GTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCATT-GTCG-TTGATT-GT-TC-CACA--A-CCTTGTTTTCCCATGACTTGTTCC-TTT-TC-------A-TTA-TT-GATCGATCCTACTTT-G-G--CATTG-AGATCTCCT-ATGATGAT--GACA--ATAGCATGCCTAGGTATGT--TTT--CTG-TTGTT-TCC--TGAAG-TCT-CTCATAGAAC-C-TCTCTCTCCTCTT------CATCT--G-C-ATCTTCT-------------------GTAGGCGAGTAACATACTATGGTGGTGGG-TTTCGTTTAT--TTGGAGTGGAAT-CTTGCTGTCAT-A----ATTCTGT-----CGC----TGACAGGCTTCCAT-CCAATCAA--AC--ATGT--------------TTG------TGATTA--GGCC-AACTCTTCTACTG-TGG-TGTTCG-TAATTTCTTCCTGAATAG-------ATTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTGCTCCACATA-CT-GTCCATCGT-G-TTTCAC-----------AGAT--------------GCCG--AGTATTTCT----A-G--------GCT--GTATTTTTCCATCTCCTG-G--ATGACTTTTGC-AATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTTGGTT-TAAGGATGTC---------TACATTTGGGCTGTCAG-CGTCCGATTGGCTTTGAC--TGA-C---TTCCTGCATGA-GTCCAGTTTCCTGGTGGGTATCC------------ATCCTT-GTT----CCGG-----ATCTCC--TGGT--GGGTGTCCAT--CCTATTTTCCTCTGTGTTGGTTTCTGTAGCGGGTA---GGATTTTACGTGACAGGGGTGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACA
gi|4 : t-ATT-GT-TCCACCA--A-CCTTGTTTTCC-ATGACTTGTTAC-TTG-CC---T-----TCA-TT-GATTGATCCTACTTT-G-C--AATTG-AGATCTCC-CATGATGAT----CATCATGTCATGCCCTAGTTTGT--GTT--CT--TTGGTGTTTCCTGAAGTTTTCTTCATAGAATCC-TCTCTTTC-TCCT------CATCATCGGCCATCTTCT-------------------GTAGGCGAGTAA-GTACTATGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTAT-ACGAGATTCTGT-----C-----------GGCTTCCATTCAAT-CAA--ACATTTTTGG-TCTGTCTT-TGTTG------TGATTAAGAGCCAA-CTCCTCTATTATGTG-TGTTCATTCATTTCTTCATGA-TAGACTATATAA-GACTGTATG--ACCTGTAGCTAGATTTATACTTGCTCCACATC-CT-GTCCATCGT-GTTTTCAC-----------AGAT--------------GCCGATA---TTTCT----A-GTGGTC-T-GTTT-----TTTTCCATCTCCTG-G--ATGACTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGG--GT---CCGGT--A-TGGCTTT--TGACAA-TGACTTCCTGCATGA-GTCCA---GTT---------TCCTGGTGGGTATAATCCATCCAATGTCAC--GGATCTATTTTCCTCGGTT--GG-TTCTGTAGC--------------G--GCCCGA--------GTAAAGGGGT---------------AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA----CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCC--TTTTTACATTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGG-TTGCGAA-CTTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGT-T-GATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTG-------TTTTG-----------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : GTTCTATCAAT-------TATTAAAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCATT-GGTG-TT-AC--AT-TATCCTA--ATCCTTGTTCCCCCATGA--TGTTTTATTTGCT---TA--GGTTG-CT-T-T---TCCAAACTT-CTG--TATTT-AAGTCTCCCCAGATCAGTAGCACATCATGATATG-------GTAT--ATCGTCTACT-GAC-TTT--TGTAG-TCT-TTCATTGGATAC-T--TTTTCATCCT------C--CTCCG-C-ATCTTCT------------------GGTTGGTGAGTAGCAGACTACTGCAGTCAA-TTTGGCGAAA--GCTGAATTGTAT-TTTGCTGTTATTA-TTCATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCA--CAA--ACTTCTGTGAACC--TCTTCTGTTG------TAATTAT-GGCT-A-CTCCTCTACTA-GCA-CGATCA-TCACACCTTCCTGAGTGG-------AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCC--TTCACATGTCCATT-TTG-TTTCAC-----------------------T--TTC--CA--A------------G-GAGCTCGA-TCTT-ATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : ATCA--GGCC-A-CTCCTCTACTA----------A-TCAT-----CCTGAGTA-------TAACATCTG-ATGTTACATG----TAG--TTGT-TTTTGTCCATTTC-CA-GTCCATC-T------------------------------TGT--TTCGCCG--A---CTCCTT---A-GAGATCTA-GCTT-GTAGTTTTCCATTTCTCT-A--ACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTTGGTC-GAAGGAAATC---------CGTTCTCGGGCTATCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCGTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------AGTTGTTTTATAT----GGTA---GGAT---------------TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : TCTG-ATG--ACCTGATGTTAG--TTGC-TTTGATCCATTTC-CA-GTCCATC-T------------------------------TGT--TTCGCCG--A---CTCCT----AAGAGATC-AAGTTT-GTAGTTTTCCATTTCTCT-A--ATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTTGGTC-GAAGGATATC---------CGTTCTCGGGCTGGCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGTTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTT-GCGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTTGT-T-GATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTG--------TTTGACCACT---ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--At
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 11 1 1 1 11 33333333 1 1 222 1 1 1 1 1 111 1 33 1 22 444444444 1 1 1 22222 1 1 11 1 1 11 111 1 1 1 11 1 111 111 22 222 11111 1111 2222222222 222222222 11 11 111 11 11 1 1 333333333 1 11 11 1 1 11 2222 111 6666666666666666666666 111111 11 4444 2222222 1111 11111 2222222222222222222222 111 66666666666666666666 11 1 3333333 333333333333 11 11 44444444444444444444444 111 1 22222222 33333333 11 2222222222222222222222222222222222222222222222222222222222222 111 1111 1 222222222 4444444 1111111111111 1 222222222222222 333333333333 2222222222222 11 333333333 1111 111 555555555555555 111 1
lowQualScore : 1 5 1 5 999999 5 88 5 5 1 5 88 1 55555555 5 1 5 111 1 1 5 5 1 1 5 6 3 3 333 3 44 6 2 00 0 11 666666666 3 3 3 99999 3 3 6 88 7 77 3 3 3 11 444 0 2 2 0 0 0 2 0 99 66 11 999 6 6 1 6 6 6 3 111 6 99 2 1 99 111 7 88 77 1 2 00 6 6 999 3 2 5 1 0 888 5 1 77 5 44444 0000 0 2 0 555 1111111111 999999999 6 88 22 5 0 0 44 1 4 5 111 1 11 0 33 0 1 1 0 6 0 0 3 666666666 0 11 1 0 33 11 0 0 8 66 8 3 4444 666 8 8 1111111111111111111111 1 777777 0 8 1 0 88 1 44 11 2222 1 6666666 0000 8 99 1 55555 9999999999999999999999 3 1 333 88888888888888888888 0 2 2 1 0 1 8 1 1 11 8 0 1 8 0 0 0000000 0 3 1 111111111111 1 3 99 11 8 1 11111111111111111111111 666 3 6 0 44444444 6 7 2 99999999 6 6 99 11 99 6 1 6 6 2222222222222222222222222222222222222222222222222222222222222 3 1 999 77 1 1111 1 2 3 3 5 0 1 1 6 2 1 99 666666666 6 1111111 7777777777777 1 5 888888888888888 444444444444 8888888888888 11 66 0 6 888888888 4444 111 333333333333333 5 000 2 0 2
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . ... . .. . . .. . .. ......... . . . ..... . . . .. . .. . . . .. ... . . . . . . . . .. .. .. ... . . . . . . . ... . .. . . .. ... . .. .. . . .. . . ... . . . . . ... . . .. . ..... .... . . . ... .......... ......... . .. .. . . . .. . . . ... . .. . .. . . . . . . . . ......... . .. . . .. .. . . . .. . . .... ... . . ...................... . ...... . . . . .. . .. .. .... . ....... .... . .. . ..... ...................... . . ... .................... . . . . . . . . . .. . . . . . . ....... . . . ............ . . .. .. . . ....................... ... . . . ........ . . . ........ . . .. .. .. . . . . ............................................................. . . ... .. . .... . . . . . . . . . . . .. ......... . ....... ............. . . ............... ............ ............. .. .. . . ......... .... ... ............... . ... . . .
lowQualScore : 0 5 0 0 000000 0 00 0 0 0 5 00 0 55555555 5 0 0 000 0 0 5 0 0 0 0 7 3 3 777 3 00 7 0 77 7 77 000000000 3 3 3 00000 3 3 7 33 3 33 3 3 2 88 000 0 5 5 2 0 0 5 8 22 44 00 222 0 7 7 7 7 7 5 777 7 22 5 0 22 777 3 33 77 0 5 22 7 7 000 2 2 7 9 7 333 7 7 99 7 33333 6666 2 2 2 111 8888888888 666666666 4 00 55 0 2 2 44 4 0 7 777 0 00 8 88 2 0 2 2 5 8 0 2 000000000 0 22 0 2 88 22 0 0 0 88 0 8 6666 444 0 0 4444444444444444444444 4 000000 8 0 4 8 88 4 22 66 0000 0 6666666 4444 0 22 0 33333 0000000000000000000000 2 7 888 00000000000000000000 7 5 5 0 6 0 0 0 4 00 2 6 4 0 6 0 4444444 8 2 0 666666666666 5 3 00 00 0 0 66666666666666666666666 777 3 7 2 55555555 7 5 8 11111111 4 7 22 22 22 7 0 7 7 5555555555555555555555555555555555555555555555555555555555555 5 5 333 77 0 8888 5 5 3 7 2 7 0 0 7 2 0 22 777777777 7 8888888 8888888888888 0 0 000000000000000 222222222222 0000000000000 00 44 8 7 333333333 2222 777 333333333333333 7 000 3 7 1
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TAT-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGC-TCTTTTTCGTCTT------CATCTTCG-CCATCTTCT------------------AGTTGGCGCGTAACANACTATTATNGTGAG-TTTNGCGAAT--GCCGAGTTGTAT-CTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-A-CTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCATTTC-CA-GTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG--A---TTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TAT-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGC-TCTTTTTCGTCTT------CATCTTCG-CCATCTTCT------------------AGTTGGCGCGTAACANACTATTATNGTGAG-TTTNGCGAAT--GCCGAGTTGTAT-CTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-A-CTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCATTTC-CA-GTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG--A---TTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGACAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAA-AAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTCC--TAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTGC-AGGTTTCGTC-TGAACATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCATAAA-AGATGGT-CCACCAA--------CACCAA-GTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTTAT-TCTCCCATTC-CTTTGCTGTCCCATTAAT-GTTTC-TTT-CCCCCTAAGG-TTA-TTCTCT---TCCAACCTTTG-GAACATTGCAGGTATCCTCATGTTAACAAGACATCATAGCGTG----GGTGTTTTTATC--TTACTTAGT-TTT--TGCAGCTGT-TTCATG--ATGTGTCTTTTTCATCTCTTGCAGCATCTTCC-NNNNNNNNNNNNNNNNNNNNNNNNNACAGTTGGTGCATGACAAACTATTATTGTGAG-TTTAGCAAAT--GCCGAGTTGTAT-CTGGCT-TTA--A-ATAATT-TCT-----CAT----TTACAGGTTTCCATTNNN--NNN--NNNNNNNNNN-NN--NNNNNNNNNN------NNNNNN--NNNN-N-NNNNNNNNNNN-NNN-NNNNNN-NNNNNNNNNNNNNNNNNNNN----TAACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTGACCCATTTC-CA-GTCCATC-TTG-TTCCACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC---A---TTTCTNTTAA-GAGATC-A-ATTTTGTAGATTTCCATTTCTCT-A--ACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTTGGTT-GAAGGATATC---------CGTTCTCGGGCTGGCAACCATC--------TTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCTCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAA----TGTA---GGGT---------------TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|10 : TCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-TAAA-TGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAACTTT-TAATTG-AAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTTTTG--GGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-G-------TTTTG----CT---AC--CAAGTG-------------------TTGTT-ATCAATGACGTGATCGATTTGATTT-
gi|11 : t----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCG-------CTCGA--C-CTTA-ACGTCTAGTAGAGAGTGTCTCCA--CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGAG--AGTTCCA--GGTCAGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATGCTCTTA--CA-T---AT-TTCAATAGAT--CTT-TCCAATC-TTCTTTTAATGAgtacc
gi|13 : gGTATCC-ATATC------TGTAGTTTTATGT----GGCC---AAGTCAA------------TGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGtaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTTGGGT-TAAGGATGTC---------TACATTTGGGCTGTCAG-TGTCCGATTAGCTTT--CA-CTGAC---TTCCTGCATGA-GTCCA---GTT---------TCC------------Ttggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : TACTGGTTTCCATTCCA--TTAGGGCTTTTGTGA--C--TCTTT--TTGACAACATAACT-----CCTA-CTCCT-TCCTA-GTGTTTACCA-TCATCTCTTCCTGAGTAG------gg
gi|17 : tcTT--TGCAGCTG--TTCATAGAATGTGTCTTTTTTGTCT---------TCTTCA-GCATTTTC-------------------ATTTGGTGCGTAACAAAagtgt
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGC
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAA---CCTCTTCTTTTGATCAGGTGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT---------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT--TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCC-----TTTTTATGTTT--CTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCT-ACAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGG-TTGCAAA-CTTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGTTGT-T-GATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATC---ACTAAT-G-TCTGCACCTTG-------GTTTGC-CACT---ACATCCAATAGACTACTTCCCC-ATC-TTCTGTTGATG-ATTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGAT--AATTCCA--TATTATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGCACCAA-GTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCATT-GTCG-TT-ACTAATATCTCTCA-----------TTCCCATTA--TGTTTT-TTC-CT---TA--G-ATAGTT-TAT---TCCAGCCTT-G-G--CA-TG-AGTTC-ACTAATGTTAACAAGAC-TCATGGCGT-----GGTGTTTC-AT---CTAC-TAGT-TTT--TGCAGCTG--TTCATAGAATG---------------------TATCTTCG-TCTTCTTC-------------------AGTTGGTGCGTAAGAAACTATTATTGAGAG-TTTGGCGAAT--GCCCAGTTGTAT-CTGGCT-TTA--A-GTAA-TCTTT-----CAC----TTACCGGTTTCCATTgta
gi|3 : tTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-T-CCAATTTTTTTTGTGAT-AACCA-TGTTCCTCTTTTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATCT-TTT----ACCT-CTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTTGCG--AATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTTTC--------TTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC---------TCTA--GACTCTTACATCTTGTAGAGAACCTCTCCA-TT-ACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTG--ACGACCA--GGTTAATTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT-------AACCAG-GTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCATT-GTCG-TTGATT-GT-TC-CACA--A-CCTTGTTTTCCCATGACTTGTTCC-TTT-TC-------A-TTA-TT-GATCGATCCTACTTT-G-G--CATTG-AGATCTCCT-ATGATGAT--GACA--ATAGCATGCCTAGGTATGT--TTT--CTG-TTGTT-TCC--TGAAG-TCT-CTCATAGAAC-C-TCTCTCTCCTCTT------CATCT--G-C-ATCTTCT-------------------GTAGGCGAGTAACATACTATGGTGGTGGG-TTTCGTTTAT--TTGGAGTGGAAT-CTTGCTGTCAT-A----ATTCTGT-----CGC----TGACAGGCTTCCAT-CCAATCAA--AC--ATGT--------------TTG------TGATTA--GGCC-AACTCTTCTACTG-TGG-TGTTCG-TAATTTCTTCCTGAATAG-------ATTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTGCTCCACATA-CT-GTCCATCGT-G-TTTCAC-----------AGAT--------------GCCG--AGTATTTCT----A-G--------GCT--GTATTTTTCCATCTCCTG-G--ATGACTTTTGC-AATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTTGGTT-TAAGGATGTC---------TACATTTGGGCTGTCAG-CGTCCGATTGGCTTTGAC--TGA-C---TTCCTGCATGA-GTCCAGTTTCCTGGTGGGTATCC------------ATCCTT-GTT----CCGG-----ATCTCC--TGGT--GGGTGTCCAT--CCTATTTTCCTCTGTGTTGGTTTCTGTAGCGGGTA---GGATTTTACGTGACAGGGGTGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACA
gi|4 : t-ATT-GT-TCCACCA--A-CCTTGTTTTCC-ATGACTTGTTAC-TTG-CC---T-----TCA-TT-GATTGATCCTACTTT-G-C--AATTG-AGATCTCC-CATGATGAT----CATCATGTCATGCCCTAGTTTGT--GTT--CT--TTGGTGTTTCCTGAAGTTTTCTTCATAGAATCC-TCTCTTTC-TCCT------CATCATCGGCCATCTTCT-------------------GTAGGCGAGTAA-GTACTATGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTAT-ACGAGATTCTGT-----C-----------GGCTTCCATTCAAT-CAA--ACATTTTTGG-TCTGTCTT-TGTTG------TGATTAAGAGCCAA-CTCCTCTATTATGTG-TGTTCATTCATTTCTTCATGA-TAGACTATATAA-GACTGTATG--ACCTGTAGCTAGATTTATACTTGCTCCACATC-CT-GTCCATCGT-GTTTTCAC-----------AGAT--------------GCCGATA---TTTCT----A-GTGGTC-T-GTTT-----TTTTCCATCTCCTG-G--ATGACTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGG--GT---CCGGT--A-TGGCTTT--TGACAA-TGACTTCCTGCATGA-GTCCA---GTT---------TCCTGGTGGGTATAATCCATCCAATGTCAC--GGATCTATTTTCCTCGGTT--GG-TTCTGTAGC--------------G--GCCCGA--------GTAAAGGGGT---------------AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA----CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCC--TTTTTACATTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGG-TTGCGAA-CTTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGT-T-GATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTG-------TTTTG-----------NNNNAGTAGACTACTTCT-CAATC-TCCTGTTGATG-ATTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : GTTCTATCAAT-------TATTAAAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCATT-GGTG-TT-AC--AT-TATCCTA--ATCCTTGTTCCCCCATGA--TGTTTTATTTGCT---TA--GGTTG-CT-T-T---TCCAAACTT-CTG--TATTT-AAGTCTCCCCAGATCAGTAGCACATCATGATATG-------GTAT--ATCGTCTACT-GAC-TTT--TGTAG-TCT-TTCATTGGATAC-T--TTTTCATCCT------C--CTCCG-C-ATCTTCT------------------GGTTGGTGAGTAGCAGACTACTGCAGTCAA-TTTGGCGAAA--GCTGAATTGTAT-TTTGCTGTTATTA-TTCATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCA--CAA--ACTTCTGTGAACC--TCTTCTGTTG------TAATTAT-GGCT-A-CTCCTCTACTA-GCA-CGATCA-TCACACCTTCCTGAGTGG-------AGTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCC--TTCACATGTCCATT-TTG-TTTCAC-----------------------T--TTC--CA--A------------G-GAGCTCGA-TCTT-ATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : ATCA--GGCC-A-CTCCTCTACTA----------A-TCAT-----CCTGAGTA-------TAACATCTG-ATGTTACATG----TAG--TTGT-TTTTGTCCATTTC-CA-GTCCATC-T------------------------------TGT--TTCGCCG--A---CTCCTT---A-GAGATCTA-GCTT-GTAGTTTTCCATTTCTCT-A--ACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTTGGTC-GAAGGAAATC---------CGTTCTCGGGCTATCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCGTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------AGTTGTTTTATAT----GGTA---GGAT---------------TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : TCTG-ATG--ACCTGATGTTAG--TTGC-TTTGATCCATTTC-CA-GTCCATC-T------------------------------TGT--TTCGCCG--A---CTCCT----AAGAGATC-AAGTTT-GTAGTTTTCCATTTCTCT-A--ATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTTGGTC-GAAGGATATC---------CGTTCTCGGGCTGGCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGTTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTT-GCGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTTGT-T-GATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTG--------TTTGACCACT---ACAGCCAATAGACTACTTCTCC-ATC-TCCTGTTGATG-ATTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--At
blockSeqs : A T C . . . . . . G . . T ACATTGTA A A . . A T . C T G G C . . AT . TG C T A TT AAATA . . . C . . G AG T TG . . T CT C . G C G . C TT CT TC ACG A . T . T G T GGG G TA G T TT TTT T TG CT G T AT G C G T C . T CCC . G GA C CCATG ATCT A GA CGGGCATGCT GACTCTT G GA AA A AA G G G C T . . G A T G G T TCACGTTGC A A C . GG . . G TA A T AT CTT A G TAGATAGTTTAT A CTG . T TA T AA AT CCTA T ATCGT ACT G CC C TTTTC GTGTCTTTTTTGTCT A T GCC TG C C A T G G A TT C T T G TACGAG C T TTATTCGCCCAA T T AT GG T T GACTCTTTTTGACAACA AAG T A GTGTTTA T C G GACTATAT T T TT TA AT A C A T GTGTTTCACAGATGCCGAGTATTTCTA T G GA G T CACC T A C T G A A T A C TT TAAATTGGG C CGATTAG TGACAATGAC C C GTTTCCTGGTGGGTA TGGTGGGTATAA GTCACGGATCT CT TA T TTTCCTCTG AGCG AAG TTTACGTGACAGGGG G AAA C C
blockSeqs : C . . T . . C . . AT . . . . T . . . . T TG . . T GG G . G C . . C TC TG . C T . T . . . A . . . G C . . T TG CC A G T . . T T T . A C . C . . . . G G CGC ACCACT A CT AA . A G A . G A . . T G C T . T TA . G A . TA . . . T . C A CTT . . ATTATTGATCGA T GG . A CC A AG AT CCCT G CAT GTT . . C CTG CTCTCTCTCCTCTT A T GC A C G A G . C T . G A . G TTATTC C G CAC T C T . A A GGTCTGTCTTTGTTG AT A . TGTGTGT . T A G T . . TA . . C . . GTGTTTTCACAGATGCCGATATTTCTA A C TA A A G T C A T C T A . A C T . C CGATTGG CACTGAC C C GTT . CCGG . TA . ATC . . CAA . . C T
blockSeqs : T CT C . . C . . . . CA . C A . T . . . A . . . G C . . T C C G G G . . G T A . T T . C . . . . A T TGG CCTTA A GA A . A A A . G C . . A T . . . T TT . T A . TC . . . T . T A T . . TTCATTGATTGA T GG . A T A . T . G TTT ACT . . A CTG CCTCTCTTTCTCCT A T TC A A C T G . T T . T A . G AGTA C G CGC G A . . T T GAACCTCTTCTGTTG A . . TGGTGT . T G G C . . AC . . T . . TTGTTTCGCCGACTCCTTA A A AA G G G T C . C C T T . A C T . C ATGG GACTGAC C . GTT . CG . T . . . . . . . T A
blockSeqs : . . . C . . . . . . A . . . . C . . . T C G G G . . T T T . A T . G . . . . A G TGT CCACT N CT A . A A A . G A . . . . . . T . . TAGGTTGCTTT A GC . G C T . A . A GTT TT . . A TCT ACTTTTTCATCCT . C C T A C T A . G A . . T . . TA T A C C T . . . C TTG A . . GCACGA . A G T . . . AT . . G . . TTGTTTCGCCGACTCCTAA A A T G G A G C . C C G C . G A G . . AT CCAGT G . TCC . CG . . . . . . . . . T A
blockSeqs : . . . . . . . . . . . . . . G C . . . . . T G T . A C . T . . . . G A GT CAT A CT A . A A T . . . T TCT G . . C T A . G . . . . . . . . . . . . . . A . . TTGTTTCACTTTCCAAG . . . . . A C . . . . G C . C A G . . AT CCAGT G . TCC . . . . . . . . T .
blockSeqs : . . . . C . . . . G G TG CT . T A . A A G . . . . .
blockSeqs : . . G C . . . . .
blockSeqCons : N* C* G* T** G** CCTT***** A* A* G** ** T* A*** T** TTNATTGATCGA********** GG**** C* ** AT CCC* NTT**** ACT* CCG** GCTCTCTTCNTCCT******** C** N******************* TAC**** GGCTCTTTTTG************ GCGCGT** G******* NA* G* ATGG***
originalCons : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCGAACCTTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTGT-GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCG-------TTTTG--CACT---ACATCCAGTAGACTACTTCTCCAATC-TCCTGTTGATGAATTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCATGACTTGTTTC-TTT-CC---TA--G-TTA-TT-TAT-GATCCAACCTT-G-G--CATTG-AGGTCTCCTCATGTTAATAAGACATCATGGCGTGCC--GGTGTNT--ATC--CTACTTGGT-TTT--TGCAGCTNT-TTCATAGAATGC-TCTTTTTCGTCTT------CATCTTCG-CCATCTTCT------------------AGTTGGCGCGTAACANACTATTATNGTGAG-TTTNGCGAAT--GCCGAGTTGTAT-CTTGCTGTTAT-A-GTAATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGA-CC--TCTTCTGTTG------TGATTA--GGCC-A-CTCCTCTACTA-GCG-TGNTCA-TCATNTCTTCCTGAGTAG------TAACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCATTTC-CA-GTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG--A---TTTCT----A-GAGATC-A-GCTT-GTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
finalCons : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTACGTTT--CTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTN-CGAAC-TTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTTGTT--GATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAACG--TCTGCACCTCG-------TTTTGCCTT-----ACATCCAGTAGACTACTTCTCCA-TC-TCCTGTTGATGA-TTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCAA---CCTTGTTTTCCCATGAT--GTTTC-TTT-CCTTNATTGATCGA----------TCCAACCTTGG----CATTG-AGGTCTCCC-ATGTTAAT--GACATCATGGCGTGCCC-GGTGTNTNTT----CTACT-GGT-TTT--TGCAGCCG--TTCATAGAATGCTCTCTTCNTCCT--------CATCTTCGC--ATCTTCN-------------------GTTGGCGCGTAACANACTATTATNGTGAG-TTTNGCGAAT--GCCGAGTTGTAT-CTTGCTGTTATAC----ATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAA--ACTTNTGTGGCTCTTTTTG------------TGATTA--GGCC-A-CTCCTCTACTAGCGCGT--TCA-TCATNTCTTCCTGAGTAG-------AACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCATTTC-CA-GTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG--A---TTTCT----A-GAGATCNA-GCTTG-TAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTCATGG---CTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222222 1 11 1 1 1 11 33333333 1 1 222 1 1 1 1 1 111 1 33 1 22 444444444 1 1 1 22222 1 1 11 1 1 11 111 1 1 1 1111 1 111 111 22 11111 1111 2222222 111 11 11 1 1 333333333 1 11 11 1 1 11 2222 22 11 33333333333333333333 111111 111 22222 4444 111 11 111111 11 3333333333333333333 55555555555555555555 11 1 333333333 333333333333 3333333333333333333333333333333333333333 111 2 22222222 333333333333333 11 22222222222222222222222222222222222222222222222222222222222 1111 1 222222222 4444444 1111111111111 1 222222222222222 333333333333 2222222222222 11 333333333 1111 111 555555555555555 111 1
lowQualScore : 1 5 1 5 999999 5 88 5 5 1 5 88 1 55555555 5 1 5 111 1 1 5 5 1 1 5 6 3 3 333 3 44 6 2 00 0 11 666666666 3 3 3 99999 3 3 6 88 7 77 3 3 3 11 444 0 2 2 0 0 0 2 0 0 7777 999 6 6 1 6 6 6 3 111 6 99 2 1 99 111 2 77 3 6 1 2 00 6 6 99 3 2 5 1 0 888 5 1 77 5 44444 0000 0 2 0 555 4 55 5555555 5 9999 88 5 0 5 1 4 5 111 1 11 0 33 0 1 1 0 6 0 0 3 666666666 0 11 1 0 33 11 0 0 8 66 8 3 4444 8 22 11 00000000000000000000 1 777777 0 8 1 444 6 66666 8 11 4444 1 1 000 11 8 8 99 1 444444 6 44 3 1 6 1 4444444444444444444 44444444444444444444 1 6 0 2 2 1 0 1 8 1 1 11 8 0 1 8 0 0 444444444 1 1 111111111111 1 3 7777777777777777777777777777777777777777 666 0 0 77777777 6 7 2 111111111111111 6 99 11 99 6 1 6 6 22222222222222222222222222222222222222222222222222222222222 3 1 66 1 1 1111 1 6 3 3 5 0 1 1 6 2 1 99 666666666 6 1111111 7777777777777 1 5 888888888888888 444444444444 8888888888888 11 66 0 6 888888888 4444 111 333333333333333 5 000 2 0 2
lowQualScore : . . . . ...... . .. . . . . .. . ........ . . . ... . . . . . . . . . . ... . .. . . .. . .. ......... . . . ..... . . . .. . .. . . . .. ... . . . . . . . . . .... ... . . . . . . . ... . .. . . .. ... . .. . . . . .. . . .. . . . . . ... . . .. . ..... .... . . . ... . .. ....... . .... .. . . . . . . ... . .. . .. . . . . . . . . ......... . .. . . .. .. . . . .. . . .... . .. .. .................... . ...... . . . ... . ..... . .. .... . . ... .. . . .. . ...... . .. . . . . ................... .................... . . . . . . . . . . . .. . . . . . . ......... . . ............ . . ........................................ ... . . ........ . . . ............... . .. .. .. . . . . ........................................................... . . .. . . .... . . . . . . . . . . . .. ......... . ....... ............. . . ............... ............ ............. .. .. . . ......... .... ... ............... . ... . . .
lowQualScore : 0 5 0 0 000000 0 00 0 0 0 5 00 0 55555555 5 0 0 000 0 0 5 0 0 0 0 7 3 3 777 3 00 7 0 77 7 77 000000000 3 3 3 00000 3 3 7 33 3 33 3 3 2 88 000 0 5 5 2 0 0 5 8 8 4444 222 0 7 7 7 7 7 5 777 7 22 5 0 22 777 5 77 7 7 0 5 22 7 7 22 2 2 7 9 7 333 7 7 99 7 33333 6666 2 2 2 111 2 22 2222222 0 0000 00 0 2 0 4 0 7 777 0 00 8 88 2 0 2 2 5 8 0 2 000000000 0 22 0 2 88 22 0 0 0 88 0 8 6666 0 00 22 66666666666666666666 4 000000 8 0 4 222 0 22222 0 66 2222 4 0 000 88 0 0 22 0 333333 7 55 7 0 7 0 3333333333333333333 22222222222222222222 0 7 7 5 5 0 6 0 0 0 4 00 2 6 4 0 6 0 888888888 4 0 666666666666 5 3 6666666666666666666666666666666666666666 777 0 2 00000000 7 5 8 888888888888888 7 22 22 22 7 0 7 7 55555555555555555555555555555555555555555555555555555555555 5 5 55 0 0 8888 5 7 3 7 2 7 0 0 7 2 0 22 777777777 7 8888888 8888888888888 0 0 000000000000000 222222222222 0000000000000 00 44 8 7 333333333 2222 777 333333333333333 7 000 3 7 1
consensus : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTAC--GTTTCTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTN-CGAAC-TTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTT--GTTGATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCGTTT-TG--C-C-CTA-CA---TCCAGTAGACTACTTCTCCA-TCTCCTGTTGATGA-TTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCAT-GACTTGTTTC-TTTCCT-------T-NA-TTGNTCGATCCAACCTT-G-G--CATTG-AGGTCTCC-C-ATGTTAATAAG--A-CATCATGGCGTGCC--GGTGTNTCT-TCT-ACT-GGT-TTT--TGCAG---CCGTT-CATAGAATGCTNTCT-TCNTC-CT-----CATCTTC-G--CATCTT--------------------CNG-TTGGCGCGTAACANACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTAT-A--C---ATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAAA--CTTNTGTGA--C---TCTTT-T--TG------TGATTA--GGCC-ACTCCTCTACTA-GCGTGT-TCA-TCATNTCTTCCTGAGTAG------A------ACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCATTTC-CA-GTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG---ATTTCT----A-GAGATCNAGCTTGTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
Reference ( family-1383 ) : CAGGTCTCCTNTCTTGGGTAACTTTACAATCAANCGCCTTTCCACTGACCCAGAAAGGATGGTACTTTCTCTTCTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGNGTTTGAAGTTCCTTCTGCCTTTCANAAGTTCTGCATCTACATTGTATTTGATCNATCCCTGCGGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCGCTGANGTCAGGTGGTTCTGTGTTGNTAATCAAGCTTGTTTTCAGCTGGTNTTATAACTGCCTNTGTTTCTGGGTCGTCCATGTTGAAGACTTGTT-CAAA-GTGATCTATTTCCAGCATTT-CAAAAT-TCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATCCTTTGA-TAGGTACGTTCGTTNCGTGGAATTTCCCCGCTAAA-A----CTTCGTCAA-GCGGTATAAGGATT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCT--TTATATATGCCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCCGTACTCTTT-GCCC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTT-TGCCAGGTTTCGTC-TGAA-ATCCACTCCTCCTTTTTTTAC--GTTTCTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCCTAACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTN-CGAAC-TTCTAGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTT--GTTGATGTCAAGTGGTGGCGGTCTTT-GGTCTTCTCTCTTGGCTTTACGGAGC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAC-G-TCTGCACCTCGTTT-TG--C-C-TTA-CA---TCCAGTAGACTACTTCTCCA-TCTCCTGTTGATGA-TTACGTGATCGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--AATTCCA--GGTTANTTTGTGGATATCCCTGTGCGTNAA-AGATGGTTCCACCAAT-------CACCAA-GTTGTTTTCCTGACA-AAANGTGCT--CAGCCNGTCTCCATT-GTCG-TT-ACT-AT-TCTCCCA--A-CCTTGTTTTCCCAT-GA--TGTTTC-TTTCCT-------T-NA-TTGATCGATCCAACCTT-G-G--CATTG-AGGTCTCC-C-ATGTTAAT--G--A-CATCATGGCGTGCCC-GGTGTNTNT-TCT-ACT-GGT-TTT--TGCAG---CCGTT-CATAGAATGCTCTCT-TCNTC-CT-----CATCTTC-G--CATCTT--------------------CNG-TTGGCGCGTAACANACTATTATNGTGA-GTTTNGCGAA--TGCCGAGTTGTA-TCTTGCTGTTAT-A--C---ATTCTNT-----CGC----TTACNGGTTTCCATTCCA--CAAA--CTTNTGTGG--C---TCTTT-T--TG------TGATTA--GGCC-ACTCCTCTACTA-GCGCGT-TCA-TCATNTCTTCCTGAGTAG------A------ACGTCTG-ATG--ACCTGANGCTAG--TTGT-TTTGNTCCATTTC-CA-GTCCATC-T-G-TTTCAC-----------AGAT------TGT--TTCGCCG---ATTTCT----A-GAGATCNAGCTTGTAGTTTTCCATTTCTCT-A--ACGACTTGTGCCAAT-TTTCCTGTCTGGTAGAGGGTCCGCACATTCCAGCAGCCCA-CTCTACGTANGGTCTTTGGTC-GAAGGATGTC---------CGTTCTCGGGCTGTCAACCGTC--A-TGGCTTT--C--CAG-T---TTCCTGNATGACGTCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTGGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|1 : CAGGTCTCCTTTCT-GGGTAACTTTACAATCAAACGCCTTTCCACTGACCCAGAAAGGATGGTATTTTCTCTTTTGTGGACCAAATTTTCTGAAGTATCTTGCGTAAGTATTCGAGGTGTTTGAAGTTCCTTCTGCTTTTCAAAAGTTCTGCATTT--------TTTG-TCTATTCCTGCAGCTTTCCCATTCTTTAGAGGCAGACAATGCCTTTTTGACTTCACTGATGTCAGGTGGTTCTGTGTTGATAATCAAGCTTGTTTTCAG-TGGTGTTATAACTGCCTCTGTTTCTGG-TCGTC-ATGTTGAAGACTTGTTTCAAATGTGATCTATTTCCAGCATTTACAAAATCTCTTCTT-TTTTGACAGGATGTTACCTTGCTGATTCTTTGAATAGGTATGTTCGTTGCGTGGAATTTCCCCGCTAAA-AAGATCTTCGTCAAAGCGGTAGTAGGATTTGCATGTCTTTGTTTTTGAAGGAGCGGCTGTTTTCTGCTTCCTCTTGCTAAGCTCTCC--TAATATATGCCTTTCGATCTGCTTTAGCTCCCATCT-CACCTCTTTATCTAGATCTCC-TACTTTTTTGCCCCAGCTTTTCCTTTACTCTCTCTGATTTCGT-GATAGGATGCTCTTTTC--TTTCCTTTTGTTTTCTTCCGCCTTTCTGC-AGGTTTCGTC-TGAACATCCACTCCTCCTTTTTTTAC--GTTTCTTTGGCC-T-TAAAATTTGTTTTCCAAGTCTCCAAACAGTACTTTATGTAAAATCTTCC-ATATCCA-CATCTTGT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTTGCAAACCTTCTAGTTAGAAAGTTCGTT--AAC-CTGTGGGTT-TTTCAGTTTATGTTGATGTCAAG-GGTGGCGGTCTTTTGGTCTTTTCTCTTG-CTTTACGGAGT--TTTAAACTTTAGTTT--TG-CC-----AG----CACTAGGGATTGATCGCTAACAATTG-TCTGCACCTTGTTT-TG--C-A-CTA-CA---TCCAGTAGACTACTTCTCCAATCTCCTGTTGATGAATTACATGATCTATTTGGTTT-CTGGGTTTTTACCGTCTGGAAGAAATTCCAATGTTTGTTTTGTGGATATCTCTATGCATAAA-AGATGGT-CCACCAA--------CACCAA-GTTGTTTTCCTGACAGAAACGTGCTGCCAGTCGGTCTCCATTTGTCAATT-ACTTAT-TCTCCCATTC-CTTTGCTGTCCCATTAA--TGTTTC-TTTCCCCCTAAGGT-TA-TTC-TCT-TCCAACCTTTG-GAACATTGCAGGTATCCTC-ATGTTAACAAG--A-CATCATAGCGTG----GGTGTTTTTATCTTACTTAGT-TTT--TGCAG---CTGTTTCATGATGTGTCTTTT-TCATCTCTTGCAGCATCTTC-C--NNNNNNNNNNNNNNNNNNNNNNNNNACAG-TTGGTGCATGACAAACTATTATTGTGA-GTTTAGCAAA--TGCCGAGTTGTA-TCTGGCT-TTAA-A--T---AATTTCT-----CAT----TTACAGGTTTCCATTNNN--NNNN--NNNNNNNNN--N---NNNNN-N--NN------NNNNNN--NNNN-NNNNNNNNNNNN-NNNNNN-NNN-NNNNNNNNNNNNNNNNNNNNNNNTA------ACATCTG-ATG--ACCTGATGTTAG--TTGT-TTTGACCCATTTC-CA-GTCCATC-TTG-TTCCACTGACTCTTAAGAGATCAAGTTTGTAGTTTTCC----ATTTCTNTTAA-GAGATCAATTTTGTAGATTTCCATTTCTCT-A--ACGACTTGGGCCAAT-TTTCCTGTCTGGTAGAGGGTTCGCACATTCCAGCAGCCCA-CTCTACGTAGGGTTTTTGGTT-GAAGGATATC---------CGTTCTCGGGCTGGCAACCATC--------TTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCTCTTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAA----TGTA---GGGT---------------TGCTAGCCCTACGCACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGGC
gi|10 : TCTTTTTTTTTTTACTTCTTCCTTTGACCACGTAG---TTGTTGACCA--TTTTCTAGTAATACTTCAT-T-AAATGTTCCTATATCAA-TTTCCTCTGGGTGTTCCAT------GAGAATTG--AGA---ACTTGTTC-TGAAC-TTTTAATT-GAAAGCTTTTCATAAT-TTTAGGGTC-TTTCAGCTT--TTGGGTGTTGATTGGAGGCAGTCTTT-GGGCTCCTCGCCTTGCTTTTCTTAGC--TTCAA-CTTGATTTT--TG-TT-----AC----TACTAATGAGTGGTCATT-CCCAT-G-CCAGCCCCT-GTTT-TG--C----TA-C-----CAAGTG------TTGT---------TATCAATG----ACGTGATCGATTTGATTT-
gi|11 : t----CACTAGGTGATGGTCGCTACCTAC-T-TCTGCACTCCGCTC-GA--C-C-TTAACG---TCTAGTAGAGAGTGTCTCCA-CATACCATTGATCA-TCAGGTGGTCAATCTGGTTC-CTGC--CCCTTCCATTTGGAG--AGTTCCA--GGTCAGTTTGTAGATATCACGGTGTGTGAAGAGAt
gi|12 : gctgtTTT-TGCTTTCTTTCCTGGTCT---GGAGCCCTTCAA-GTTCAAATG--GG-CCCCATGAG----T-CCAGGCAGTGATCATAATTCAC-GATTTGCACCTCGGGCATG--CTC-TTA-CATATTTCAATAGAT--CTTTCCAA-TCTTCTTTTAATGA-Tgtacc
gi|13 : gGTATCC-ATATC------TGTAGTTTTATGT----GGCC---AAGTCAA------------TGTTGGCTGAAGGCACA-AT---CCTCCTA---TCTCATC-CGGGGTTGGGATCAGCCATGaatatattcaat
gi|14 : CCAGTAACCAA-CTCTACATACGGTCTTTGGGT-TAAGGATGTC---------TACATTTGGGCTGTCAG-TGTCCGATTAGCTTT--CA-CTGAC---TTCCTGCATGA-GTCCA---GTT---------TCC------------Ttggtggagtaaataattaacacccagtgtttgattactgtaaacataattatttat
gi|15 : TACTGGTTTCCATTCCA--TTAGGGCTTTTGTGA--C---TCTTT-T--TGACAACATAACT-----CCTACTCCT-TCCTA-GTGTTTACCA-TCATCTCTTCCTGAGTAG------A------GTGTgg
gi|17 : tcTT--TGCAG---CTGTT-CATAGAATG-TGTCT-TTTTT-GT-----CTTCTTCAG--CATTTT--------------------CAT-TTGGTGCGTAACAAA
gi|19 : A-AT---CCTCCTCCTTTTTCAGC-CGAGCTTGGGACCGTCCTTGGC
gi|2 : CAAGTCTTCTATCTTAGGTAACTTTACAATCAACC-CCTTTCT------TCAGAAAG-ATG--ACTTTTTTTTCTGTGGACCAAATTTT-TGAAGTATCTTA-GTAAGTATTCGAGGGGTTTGAAGTTCCT-CTGCCTT--ATAAGTTCTGCATCTACATTGTATTTGATCAATCCCTGCGGCTTTCCTATTCTTTAGAG-CAGACAATGCCTTTT---CTTTGCTGAAGTCAGGTGGTTCTGTGTTGTTA-TCAAGCTTGTTTTCAGCTGGTTTTATAACTGCCTGTGTTTCTGGGTCGTCCATGTTGAAGGCTTGTT-CAAA-ATGATCT--TTCAAACATTT-CAAAA---CCTCTTCTTTTGATCAGGTGTTGCATTGCTGATCTTTTG-----GTACGTTTGTTTTGTGGAATTTCCCTGCT---------CTTCGTCAA-GCGGCATAAGGACT-GCATGTCTT-GTTTC----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAA--TCTCT--TTATATATGCCTTTCTATCTGCTGTTGCTCCCTTCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GCCC-AGCTTTTCCTTCACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TTCACCTTT-TGTCAGGTTTTATC-TGAA-ATCCACTCC-----TTTTTAT--GTTTCTTTGGCC-C-TAGAATTTGTTTACCA-GTCTCCT-ACAGTACCTTGT-TAAAAACTTCC-ATATCCA-TATCTTCT---T-TTTCAT--CTGCCAGGACTG--AAA---ATCGGTTG-CAAAC-TTCTAGTTGGGAAGTTCGTTT-AAC-GTGACGGTT-TTTCAGGTT--GTTGATGTCAAATGGCAGTGGTGTTT-GATCTTTTCTCTTGGCATTACGGAGT--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGGGTGATC---ACTAAT-G-TCTGCACCTTGGTT-TG--C-CACTA-CA---TCCAATAGACTACTTCCCCA-TCTTCTGTTGATGA-TTACATAATCAATTTGGTTT-CTGG--TTTTACAGTCTGGAT--AATTCCA--TATTATTTTGTGGATGCCCTTATGCAT-AA-AGATGGTTCCGTCAATCACGTTGCACCAA-GTTGTTTTCCTGACA-AAACGTGTT--CAGTCGGTCTCCATT-GTCG-TT-ACTAATATCTCTCA-----------TTCCCAT-TA--TGTTT--TTTCCT-------TAGA-TAGTTTATTCCAGCCTT-G-G--CA-TG-AGTTCACT-A-ATGTTAACAAG--A-C-TCATGGCGT-----GGTGTTTCA-TCT-ACT-AGT-TTT--TGCAG---CTGTT-CATAGAATG-TATCT-TCGTC-T-------------------TCTT--------------------CAG-TTGGTGCGTAAGAAACTATTATTGAGA-GTTTGGCGAA--TGCCCAGTTGTA-TCTGGCT-TTAA-G--T---AATCTTT-----CAC----TTACCGGTTTCCATTgta
gi|3 : tTGATTTGGTTGACAGCATTTTCGTCTTGGTTTCTTTTCTTTTG--TCTATCTTT-T-CCAATTTTTTTTGTGAT-AACCA-TGTTCCTCTTTTTA-----------GGGC-C-AAGTATTTTCTTTCCA-G-CTTCTAGCAGTGTGTTGT-TAAAATCCTCA-ATGGTGAGC----TCT---T-GTACATTACT-CA-GGA-TGTTAAATTTATC--TTT-T--AC-CTCTATCTGAAAGGATC-TT--AACGCTGTTGATTCTTTGAGTTT--GCGAATGTCTAATGGTGAATTTCTTT-GATTTTCCTTCTTGGCTTTTC--------TTAA-CTTGAGTTTGATG-TT-----TGATCTCACTAGGAAATGATCACTGCCAGC-A-TCCGCACCTC-TCT-AGACT-C-TTA-CA---TCTTGTAGAGAACCTCTCCA-TTACTTGTTAACCA-TTACATGATCAATCTGGTTTGCTG---TCTTCCCGTCTGGTG--ACGACCA--GGTTAATTTGTGTTTTTCCTTGTG-GTTGA-ATATTGTTCCACCAAT-------AACCAG-GTTGTTCTCCTTACA-GACATTGAC--AAGCCTATTTCCATT-GTCG-TTGATT-GT-TC-CACA--A-CCTTGTTTTCCCAT-GACTTGTTCC-TTTTCA-------T-TA-TTGATCGATCCTACTTT-G-G--CATTG-AGATCTCC-T-ATGATGAT--G--A-CA--ATAGCATGCCTAGGTATGTTT-TCT-GTT-GTT-TCC--TGAAG---TCTCT-CATAGAAC-CTCTCTCTCCTC-TT-----CATCT---G--CATCTT--------------------CTG-TAGGCGAGTAACATACTATGGTGGTGG-GTTTCGTTTA--TTTGGAGTGGAA-TCTTGCTGTCAT-A------ATTCTGT-----CGC----TGACAGGCTTCCA-TCCAATCAAA--C--ATG-------------T-T--TG------TGATTA--GGCCAACTCTTCTACTG-TGGTGT-TCG-TAATTTCTTCCTGAATAG------A------TTATTTG-ATG--ACCTGTAGCTAG--ATTT-CTTGCTCCACATA-CT-GTCCATCGT-G-TTTCAC-----------AGAT--------------GCCGAGTATTTCT----A-G-------GC-TGTATTTTTCCATCTCCTG-G--ATGACTTTTG-CAATCTTTCCTGTTTGGTAGGGGGTGCATACATTCCAGTATCCAA-CTCTACATACTGTCTTTGGTT-TAAGGATGTC---------TACATTTGGGCTGTCAG-CGTCCGATTGGCTTTGAC--TGA-C---TTCCTGCATGA-GTCCAGTTTCCTGGTGGGTATCC------------ATCCTT-GTT----CCGG-----ATCTCC--TGGT--GGGTGTCCAT--CCTATTTTCCTCTGTGTTGGTTTCTGTAGCGGGTA---GGATTTTACGTGACAGGGGTGCTGAGCCTGTGCAAA-AC---CCTCCCCCTTTCACATTCTGGACTTGGGACCAGACA
gi|4 : t-ATT-GT-TCCACCA--A-CCTTGTTTTCC-AT-GACTTGTTAC-TTGCCT-------T-CA-TTGATTGATCCTACTTT-G-C--AATTG-AGATCTCC-C-ATG---AT--G--ATCATCATGTCATGCCCTAGTTTGTGT-TCT--TT-GGTGTTTCCTGAAGTTTTC-TT-CATAGAATCCTCTCT-TTCTC-CT-----CATCATC-GGCCATCTT--------------------CTG-TAGGCGAGTAA-GTACTATGATGGTAAGGTTTTGTGTATTTGC--AGTGGAATTCTTGCTGTTAT-A--CGAGATTCTGT-----C-----------GGCTTCCATTCAAT-CAAA--CATTTTTGG--TCTGTCTTTGT--TG------TGATTAAGAGCCAACTCCTCTATTATGTGTGT-TCATTCATTTCTTCATGA-TAG------ACTATATAAGACTGTATG--ACCTGTAGCTAGATTTATACTTGCTCCACATC-CT-GTCCATCGT-GTTTTCAC-----------AGAT--------------GCCGAT-ATTTCT----A-GTGGTCT-GTTT----TTTTCCATCTCCTG-G--ATGACTTGTG-AAATATTTCCTGT-TGGTATA-GGT-----CATT-CAGCATCCTATTTCTACATACTGTCTTTGGGCTTAGGGATGTCTAAATTGGGCGTTATGAGG--GT---CCGGT--A-TGGCTTT--TGACAA-TGACTTCCTGCATGA-GTCCA---GTT---------TCCTGGTGGGTATAATCCATCCAATGTCAC--GGATCTATTTTCCTCGGTT--GG-TTCTGTAGC--------------G--GCCCGA--------GTAAAGGGGT---------------AGCTGATCCTGTGCACAGATAAACC-CCTCTTCTCACATCTGGAACTT-GGACCAGACAacggt
gi|5 : tgTCCATGTTGAAGACTTGTT-CAAA-GTGATCTAT--CCAGCATTT-CAAAATGTCTTCTTCTTTTGACAGGGTGTTACCTTGCTGATC-TTTGA-TAGGTATGTTCGTTATGTGGAATTTCCCCGCTAAATA----CTTCGTCAA-GCGATATAAGGATT-ACATGTCTT-GTTTT----GAAGCGGCTGTTT-CTGCTTCCTCT-GCTAAGCTCTCTAGCTATATATGTCTTTCGATCTGCTTTAGCTCCCATCTTCACCTCTTTATCTAGATCTCTGTACTCTTT-GTTC-AGCTTTTCCTTTACTCTCTCTGATTTCGTTGATAGGATGCTCTTTTTCTTTTCCTTTCGTTTC--TCCACCTTC-TGCCAAGTTTCGTC-TGAA-ATCCACTCCTCCTTTTT--AC--ATTTCTTTGGCC-C-TAGAATTTGTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-ATATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTG-CGAAC-TTCTGGTTGGAAAGCTCGTTG-AAC-CTGTGGGTT-TTTCAGTTT--GTTGATGTCAAGTGGTGGTGGTCTTT-GGTCTTTTCTCTTGGCTTTACGGAGT--TTTAA-CTTTAGTTT--TGCCC-----AG----CACTAGGGATTGATCGCTACCAAT-G-TCTGCACCTTGTTT-TG-----------N---NNNAGTAGACTACTTCTCAA-TCTCCTGTTGATGA-TTACATGATCTATTTGTGTC-CTGG--TTCTac
gi|6 : GTTCTATCAAT-------TATTAAAGTTGATTTCTTGACA-TAAAGTGCT--CAGCCTCTTTCCATT-GGTG-TT-AC--AT-TATCCTA--ATCCTTGTTCCCCCAT-GA--TGTTTTATTTGCT-------T-AGGTTGCTTT-TCCAAACTT-CTG--TATTT-AAGTCTCC-CCAGATCAGT--AGCA-CATCATGATATG-----GTATATCG-TCT-ACT-GAC-TTT--TGTAG---TCTTT-CATTGGATACTTT-T-TCATC-CT-----C--CTCC-G--CATCTT--------------------CTGGTTGGTGAGTAGCAGACTACTGCAGTCA-ATTTGGCGAA--AGCTGAATTGTA-TTTTGCTGTTATTATTC---ATTTTATTTATTCGCCCAATCACTGGTTTCCATTCCA--CAAA--CTTCTGTGAACC---TCTTC-TGTTG------TAATTAT-GGCT-ACTCCTCTACTA-GCACGA-TCA-TCACACCTTCCTGAGTGG------A------GTGTTCG-GTG--TCCTAACACTTG--CTGT-TTTGTTCC--TTCACATGTCCATT-TTG-TTTCAC-----------------------T--TTC--CA---A---------G-GAGCTCGATCTTATAACGTTCCATTTCTCTCACCACGTCTTGTGCCAGT-TTTCCAGCTTGGTAGAGGGTCCGTACATTACAgtcctt
gi|7 : ATCA--GGCC-ACTCCTCTACTA----------A-TCAT-----CCTGAGTAT------A------ACATCTG-ATGTTACATG----TAG--TTGT-TTTTGTCCATTTC-CA-GTCCATC-T------------------------------TGT--TTCGCCG---ACTCCTT---A-GAGATCTAGCTTGTAGTTTTCCATTTCTCT-A--ACTACTTGGGCCAAT-TTCCCTGTCTGGTAAAGGGTCTGCACGTTCCAGCAGCCCA-CTCTACGTAAGGGTTTTGGTC-GAAGGAAATC---------CGTTCTCGGGCTATCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCGTCAAT----C--G-----ATTCTC--TGGTTAAGGTTTCTGTAGCC-AT---------AGTTGTTTTATAT----GGTA---GGAT---------------TTCTAGCCCTACGCACA-AC---TCTCCTCTTTTCTCAGCACGGGCTTGGGGCCGGTCATGGCaaatattttattatatatatgtatatgatt
gi|8 : TCTG-ATG--ACCTGATGTTAG--TTGC-TTTGATCCATTTC-CA-GTCCATC-T------------------------------TGT--TTCGCCG---ACTCCT----AAGAGATCAAGTTTGTAGTTTTCCATTTCTCT-A--ATGACTTGCGCCAAT-TTTCCTGTCTGGTAGAGGGACCGCACATTCCAGCAGCCCA-CTCTACCTAAGGTTTTTGGTC-GAAGGATATC---------CGTTCTCGGGCTGGCAACCGTC--A-T--CTTT--C--CAG-T---TTCCTGGATAACATCCA---TCC---------TCC------------TCCCTTCAAT----C--G-----ATTCTC--TGTTTAAGGTTTCTGTAGCC-AT---------TGTTGTTTTATAT----GGTA---GGGT---------------TGCTAGCCCTACACACA-AT---CCTCCTCTTTTCTCAGCACGGGCTTGGGACCGGCCATGa
gi|9 : aTTTTCCA-GTCTCC-AACAGTACTTTGT-TAAAATCTTCC-CTATCCA-CATCTTCT---T-TTCCAT--CTGCAAGGACTG--AAA---ATCGGTTG-CGAAC-TTCTAGTTGGAAAGCTCGTTG-AAG-CTGTGGATT-TTTCAGTTT--GTTGATGTCAAGGAGTGGTGGTCTTT-GGTCTTTTCTCTTCGCTTTACGGAAC--TTTAA-CTTCAGTTT--TG-CC-----AG----CACTAGGGAGTGATCGCTACCAAT-G-TCTGCACCTTGTTT-GA--C-CACTA-CA---GCCAATAGACTACTTCTCCA-TCTCCTGTTGATGA-TTACATGATGGATTTGGTTT-CTGG--TTTTACCGTCTGGAG--At
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCCGTTCTCTGTATTTTTCCTGAAGTTTCTCATAAGACCTCTCTTTCTCATCTTCATCTGCATCTTC
Unaligned ( gi|18 ): ATCAGGTAATCTAGTCCGATTGTTTTCTCAAAGAATATCTATATGCAT