lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111 2222222222222222222222222222222222 111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111 11111111111111111111111111111111111111
lowQualScore : 4 55 222222 5555555555 11 444444444444444 111 11 222222222 1 11 11 1 1 11 777777777777777777777777777777 33333 111 444444444 1 22222222 1111 1 2222222 111 9999999999999999999999999999999999999999999999999999999999999999 222222 1 4444444444444444444444 11 1 111 33333 1111 22 1 7777777777 555 55555555555555555555555555555555555555555555555555555555555555555555 222 111 66666666666666666666666666666666666666 222222222 11111 33333 11111111 111 1 11 22 2 1 1111111111111111111111111111111111 222 4444444 222 1 111 33333333 1 444444444444444444 2 22222 11 9999999999999999 1 5555555555555555 333333333333333333333333333333333333333333 2 88888888888888888 1 4444444444 11 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222 1 444444444 22222 1111 11111111 1111111 44444444444444444444444444444444444444444444444444444 4444444444444444444444444444444444444 22 3333333 000000000000000000000000000 22222 1111111 22222 222 666666666 77777777777777777777777777777777777777
lowQualScore : 0 6 55 3 2 111111 2 1 7 0000000000 33 8 444444444444444 000 88 8 222222222 2 0 55 33 11 0 4 0 88 3 555555555555555555555555555555 0 0 33333 7 2 000 000000000 2 66 5 5 11111111 555 9999 77 777 1 77 5 1 5 1 3333333 77 11 8 444 1 3333333333333333333333333333333333333333333333333333333333333333 6 888888 0 5 1 6 777 8888888888888888888888 5 3 11 6 0 4 333 6 33333 4444 3 7 0 00 1 3 0000000000 0 888 4 55555555555555555555555555555555555555555555555555555555555555555555 6 777 1 3 66 111 777 0 4 8888 55 4 4 4 55 99999999999999999999999999999999999999 9999 3 000000000 5 0 5 6 88888 44444 222 1 33333333 111 6 5 3 0 33 2 00 7 3 0 2222222222222222222222222222222222 555 5555555 1 333 0 0 777 99999999 0 5 222222222222222222 0 11111 6 4 88 5555555555555555 77 5 5 8 0 5 6 5 0 5 6 5555555555555555 4 333333333333333333333333333333333333333333 6 0 99999999999999999 3 0 8 9999999999 11 3 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 2222 9 6 3 333333333 11111 2222 5 55555555 6 1111111 5 5 5 5 99999999999999999999999999999999999999999999999999999 666 6666666666666666666666666666666666666 5 77 33 3 5555555 111111111111111111111111111 6 33333 6 4 5 4444444 5 77 3 8 00000 6 333 000000000 6 22222222222222222222222222222222222222 6 6
lowQualScore : . . .. . . ...... . . . .......... .. . ............... ... .. . ......... . . .. .. .. . . . .. . .............................. . . ..... . . ... ......... . .. . . ........ ... .... .. ... . .. . . . . ....... .. .. . ... . ................................................................ . ...... . . . . ... ...................... . . .. . . . ... . ..... .... . . . .. . . .......... . ... . .................................................................... . ... . . .. ... ... . . .... .. . . . .. ...................................... .... . ......... . . . . ..... ..... ... . ........ ... . . . . .. . .. . . . .................................. ... ....... . ... . . ... ........ . . .................. . ..... . . .. ................ .. . . . . . . . . . . ................ . .......................................... . . ................. . . . .......... .. . ........................................................................................................... .... . . . ......... ..... .... . ........ . ....... . . . . ..................................................... ... ..................................... . .. .. . ....... ........................... . ..... . . . ....... . .. . . ..... . ... ......... . ...................................... . .
lowQualScore : 0 0 00 2 5 888888 0 7 0 5555555555 88 0 000000000000000 000 00 0 000000000 2 0 88 88 22 0 5 2 33 7 888888888888888888888888888888 7 7 44444 6 3 000 000000000 4 99 0 0 11111111 999 0000 99 444 6 99 9 7 7 7 0000000 77 88 0 000 2 8888888888888888888888888888888888888888888888888888888888888888 0 222222 8 0 0 7 555 5555555555555555555555 0 2 88 0 0 2 000 0 00000 8888 5 3 7 77 0 3 3333333333 7 000 0 00000000000000000000000000000000000000000000000000000000000000000000 7 333 2 8 11 666 000 7 0 5555 55 0 0 0 11 22222222222222222222222222222222222222 0000 1 000000000 0 1 7 7 22222 77777 888 7 55555555 777 7 0 2 0 88 5 77 3 0 5 0000000000000000000000000000000000 000 7777777 0 333 7 0 555 99999999 7 0 555555555555555555 0 00000 0 0 00 0000000000000000 99 7 7 6 2 0 0 7 7 7 7 2222222222222222 5 777777777777777777777777777777777777777777 0 0 00000000000000000 7 0 2 8888888888 00 0 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7777 0 7 3 000000000 77777 1111 7 99999999 5 6666666 0 0 7 7 99999999999999999999999999999999999999999999999999999 000 0000000000000000000000000000000000000 7 99 88 8 7777777 777777777777777777777777777 7 33333 7 0 7 9999999 7 99 0 0 55555 0 000 000000000 0 00000000000000000000000000000000000000 0 0
consensus : NAACTCGGATATT--TGTTTTGATGATGGCGGGNG----GGCATCAACGATTAGGTTTCCGGACGATAACTCNAAAA---------GTTTACATCTGA-TT-C----AT-----TTGA-A-ACTTTA-GG-ATATT--GTTACATATCAAG-TGAGNGAGAA--CCCTNNTG-ATTTTCGGAAAAATT--CGGCCAAGGTCANGGACACAGNGANCAAAAAAC-TC-G---AAAAAGTTTAAAAACATGAG---GTTTCCGGACGA---TAACTCC-------AAAANGTTTACATCTG--A-T-TCA---A--T-TGA-A-ACTTT-G-GGATATTG--TTACATATCAAG--TGAGNGAGAA-CCCTATTGATTT-TCG-AGAAAAAT-CCGTCCAAGG-TC---AAGGTCACAG-----TGA-------C-----AC-------A---ATGATT-----------------------GTTTCCGGACAATAACTC-----CAAAAGTTTACATCTGA-TTCAATTGAA-ACTTT-GGGATATTGTTA-ATATCAAGTGAGTGAGAACCCT-ATTGGTTTTCGGAAAAATCCGCCCAAGACCCACGGGCCTCATGGC--T-CACCTGTNCGAACGA-TTCA-ATGTCAC-T----ATC-ATAATTCTT--ATACTCGAAAACATTTT----G-TTAA-G-CATATGTA--ACAA----AAGT-TGT-TTAG--TTCT-ACTAGAT-CTAN-T---AACCGTA-T-CAAAATANAGGCC--CG-C-GGG---CCTCATG-G----C--T-CA-CCTGT-ACGGACGATT-CA--A----TG-T---C-AC--TAC------TC----AT--A-ATT---------CTT-TACTC-GAA-AACATTT--TGTTA----ACAGATATA--T--A--AC---AAAAGT-TGTTTAGTT-TTA--CTAGAT-CTATCTAACCGTATCANGATAATTAGGCTCGCGGGCCTTATGGCTCACCTGTATGGACGNCCCAAGGTCAC------TATTCATAACT---CTT-TACTC---GAAAACA----TTTTGTTAAAACATANNTAACNNNAGNTGCGCCTCAGTTCTTACTAGNNCTACCNAACCGTATTCAAGATAT----TATAGGCC--CG-CG-GGCCTCATG-GCTCACC-TGT-ACGGA-CGATT-CGA------TGCNNCTATTCATAACT-----------------TTGTNNCTGAAAACATATANACATAACAAAAGTTGTTCAGTTCTTACTAGATCTATCTACTACTAACGTATCAANAT-ATAGG-C-C---GCGGGCCTCATGGC--TCACCTGT-------ATG---GACGA--NTTNAT----NACNTCGT---TA---CTTA----AAA--ACATTTTGTTACG--A-ATATT--AACTA--AAA-----TTGT-C---AGTT-T--TACTAGATA-TA-CTA---ACCGTAT-C---ATA----AAGGCC-TG-C---AG-GCCTNATG-G----CTCA-CCTGT-ACGG-A-CGAT---------T-TAG---T--GTT-GC-A---A-TTGAT--AAT---------TTTTTACT-C-G--TNAAT-A-TT-CTG-TTA-NGACA-------T--TTTG-AA--CAAAAG-TTGTTTAATTT---TATNAGATCTA-TATA---AN--TATAA----------TCAA-AT----AT-ACG-CCCGCG--GGC-CTCATGGC--TCACC-TGC---ACGGACAAAATAATACGAAAA-GCCACCT-CAACTCAGCTGTAGCCCAT-CCCCATTCCTATTGATTTTCAAACCCTAATT-GAAAACTGATTT
Reference ( gi|1 ) : AAACT-GAATATTTATGTTTTGATGATGGCGGGCG----GGCGTCAACAATTAGGTTTCCGGACAATAACTCTAAAT---------GTTAACATCTGA-TT-T----AT-----TTGA-A-ACTTTA-CG-ATATT--ATTACGTATTAAG-TGAGAAAAAA--CCCTAATG-ATTCTCAGAAAAATT--CGGCCAAGGTCAA------AGTGTCCAAGAAAC-TCAG---CAAAAGTCTGAAAACATGAT---ATTTCTGGACAA---TAACTC--------AAAACGTTTACATCTG--A-T-TCA---A--T-TGA-A-ACTTT-G-CGATATTG--TTACATATCAAG--TGAGAGAAAA-CCCTTTTGATTT-TCG-AAAAAAAT-CCATCCAAGG-TC---AAGGTCACAG-----TGA-------T-----AC-------A---ATGAT------------------------GTTTCCGGACAATGACTC-----GAAAAGTGTACATCTGA-TTCAATTGAA-ACATT-GGGATGTTGTTATTCATCAAATGAGTAAGAACCTT-ATTGATTTTCAGAAAAATCCGTTTAAGGCCCGCAACCCTCATGGC--T-CACCTGTATGAACGA-TTTA-ATGTCAC-T----A---ATAACTCTTAAATACTTAAAAACATTTT----C-TTAA-GACATATGTA--ATAA----AAGT-TGT-TTAG--CGCT-ACTAGAT-CTAAGT---AACCGTA-C-CAAAATATAGGCC--TG-T-GGG---CCTCATG-G----C--T-CA-CCTGT-ACGGACAATT-TA--A----TA-T---C-AT--TAC------TC----AT--A-ACT---------CTT-TACTC-GAA-AACAATT--TGTTA----ACAGATATA--T--A--AC---AAAAGT-TGTTTAGTT-TTA--CTAGAT-CTATCTAACCACATCACGATA--TAAGCT---AG------TG------------GGATGCTATAAGGTCAC------TATTCATAATT---CCT-TACTC---AAAAACA----TT--GTTAAGACATATTGAACACTATTTGT---TTAGTT-TTACAAACTCCATCAAACCGTAC-CAAGATATACAGTGTAGGCC--CA-CG-GGCATCATG-GCTCATC-TGT-ACAGA-TGATT-TAA------TACAGCTATTTATAACT-----------------TTGTTC----AATCATAT-T---TAACAAAAATTGTTTAGTTCT-ACTAGA------TA--AC---CGTATCAAGAT-ATAAG-C-C---GTTGGCCTCATGGC--TCACTTGT-------ATT---GATGA--ATTAAT----CA-ATCTT---TA---CTCA----GAA--ACATTTTGATATG--ACATATTG-AACTA--ACA-----TTGTGA---AGTT-T--TATTAGATA-TATCTC---ATCGTAT-C---ATA----AAGGCC-TG-C---AA-GCCTAATA-G----CTCA-CCTGT-ACAG-A-TGAT---------T-TAG---C--ATT-GC-A---A-TTAAT--AAT---------GTTTTACT-C-G--TACAT-A-TT-CTT-TTA-AGACA-------T--ATTG-AA--CAAAAG-ATGTTTAATTT---TGCGAGATCTA-TATT---AG--TATG-----------TTAA-ATA---AT-ATG-CCCACG--GGC-CTCATGGC--TCATC-TAC---ACGGACAAAACACTTCGAAAATATTACCTGCAACTCGGCTGTAG--CATACCTGAAGCCTTTTGATTTT-------TGTTTGGAAAATTGATCTC
gi|7 : AACTCGGATATT---GTTTTGATGATGGCTGGTGAGAGGGCATCAATGATTAGGTTTCCGGACAATAACTTGAAAA---------GTTTACATCTGA-TC-TAAGGAT-----ATGA-G-GTTTTATCG-ATAT
gi|17 : agccgagttgcatcaaagttgTGCTTTGATGATGATGGGTG----GGCATCAACAATTAGGTTTCCAGAC
gi|19 : tagccaagttgcaaggagtTGTTTTGATG-TGGTTGTGG----GGCGTCAACAATTAAATTTCCGGACGACAACT
gi|24 : tTGTTTTAATGATGGCGGGAG----GGCATC
gi|4 : aactcggctatATGAGGTTTCCGGACGATAACTTAAAAA---------GTTTACATCTGA-TT-C----AA-----TTGA-A-ACTTTG-GG-ATATT--GTTACATATTTAG-TGATAGAGAA--CCCTATTG-ATTTTCGGAAAAATC--TGGTCAAGGTCAC------AAAGACCAAAAAAC-TCTG---AAAAAATCTAAAAACATGAG---GTTTCCGGGCAA---TAACTC--------CAAAAGTTTACTTCTG--A-T-TCA---A--A-TGA-A-ACTTT-G-GAATATTA--TTAAATATCAAG--TGAGTGAGAA-CCCTATTGATTT-TCG--GAAAAAT-CCATCCAAGA-TC---AAGGTCACAG-----TGA-------T-----AG-------A---ATAACTTCGAAAAAATTTGAGAAAATGGGGTTTCCGGACAATAACTC-----CAAAAGTTTTCACCCGA-TTCA
gi|2 : acAGGTGTACGGGCAATAACTCCCAAA---------ATTTACATCTGA-TT-C----AA-----TGGA-A-ACTTTG-GG-ATATT--GTTACATGTCAAG-TGAGTGAGAA--CCCTATTG-ATTTTTAGAAAAATT--CTTCCAAGGTCAAGGACACAGTG-ACAAAAAAC-T--GTTTTAAAAGATTGAAAAAAAAATG--GTTTCCAGAC-A---TAACGC---------CAATGTTTACATCTA--A-T-TCA---A--T-TGA-A-AGTTT-G-GGATATTG--TTACATATCATT--TGAGTGAGAA-CCCTATTGGTTTAT---AGAAAAAT-CCGCCCAAGACTC---AAAGTCTCA------TGG-------C-----TC-------A---CT--T------------------------GTT--CGGACAAT
gi|13 : ctaaaaacatcgaaaaagtttaaaaacgtgAGGTTTCAGGACAATAACTCCAAtcaaggtcactattcataattctttactcaaaaactttttgttaaaacatatataacaaaagttgttcagttttactagatctatctaaccgtatcaagatataggctcgcaggccttatggctcacctgtatggatgatttaatgtcactacatgtatttataactctttacctgaaaacatatatacataacaaaagttgttaa
gi|8 : gTTCCGGACGA---CTCTAAATCCAAAAATAGTTA-CTTCT-A-TAAT----ATCAAAATTGATA-ACTTTA-GG-GAATTGGATT-CAAATCAAGATCGGCAGAAAGTCCCTTGTG-ATT-TCGGAAAAAATGCCAGCCAAGGTCAcaaaaaaaaccccatctgattcaatgtgtgaatgagaatcctattggtttttggaaaaaaatcatcc
gi|14 : ATCTGAATT-C----AT-------GA-AGACTTTA-GGGATATT--GTAA---ATCAAG-AGAGAGAAAA--CCCTCATGAATTTTGAGAAAAA
gi|2 : AAAAACATC-G---AAAAAGTTTAAAAACGTGAG---GTGTACGGGCAA---TAACTCCC------AAAA--TTTACATCTG--A-T-TCA---A--T-GGA-A-ACTTT-G-GGATATTG--TTACATGTCAAG--TGAGTGAGAA-CCCTATTGATTT-TT--AGAAAAAT-TCTTCCAAGG-TC---AAGGACACAG-----TGA-------CAAAAAACTGTTTTAA---AAGATTGAAAAAAAAATG-----------GTTTCCAGACA-TAACGC-----CAAT-GTTTACATCTAA-TTCAATTGAA-AGTTT-GGGATATTGTTACATATCATTTGAGTGAGAACCCT-ATTGGTTTATAGAAAAATCCGCCCAAGACTCA-AAGTCTCATGGC--T-CACTTGTTCGGACAA-TTCA-AGGTCAC-T----ATTCATAATTCTT---TACTCAAAAACTTTTT----G-TTAA-AACATATATA--ACAA----AAGT-TGT-TCAG--TTTT-ACTAGAT-CTATCT---AACCGTA-T-CAAGATATAGGCT--CG-C-AGG---CCTTATG-G----C--T-CA-CCTGT-ATGGATGATT-TA--A----TG-T---C-AC--TACATGTATTT----AT--A-ACT---------CTT-TACCT-GAA-AACA-----TAT----------ATACA--T--A--AC---AAAAGT-TGTT
gi|4 : ctACATGAG---GTTTCCGGACGA---TAACTT--------AAAAAGTTTACATCTG--A-T-TCA---A--T-TGA-A-ACTTT-G-GGATATTG--TTACATATTTAG--TGATAGAGAA-CCCTATTGATTT-TCG--GAAAAAT-CTGGTCAAGG-TCACAAAGACCAAAAAACTCTGAAAAAATCT-----AA-------AAACATGAG------------------------GTTTCCGGGCAATAACTC-----CAAAAGTTTACTTCTGA-TTCAAATGAA-ACTTT-GGAATATTATTAAATATCAAGTGAGTGAGAACCCT-ATTGATTTTCGGAAAAATCCATCCAAGaa
gi|7 : ATGATTAGGTTTCCGGACAA---TAACTT--------GAAAAGTTTACATCTG--A-T-CTAAGGA--TATGA-G-GTTTT-ATCGATATatcaaggtcacagtgatagaataacttcgaaaaaatttgagaaaatggggtttccggacaataactccaaaagttttcacccgattca
gi|13 : agccgagttgcatcaaagttgaactcggatattgttttgatgatggctggtgagagggcatcaTTTCAGGACAA---TAACTCCAACAAAAAAAACCC---CATCTG--A-T-TCA---A------------------------TG--T----------G--TGAATGAGAA-TCCTATTGGTTT-TTGGAAAAAAAT--CATCC
gi|8 : gaggTTCCGGACGACTCTAAATCCA------AAAATAGTTACTTCTATAA-TATCA---AAAT-TGATA-ACTTT-A-GGGAATTGGATT-CAAATCAAGATCGGCAGAAAGTCCCTTGTGATTT--CG-GAAAAAATGCCAGCCAAGG-TC---A
gi|14 : ATCTG--AAT-TCA--------TGA-AGACTTTAG-GGATATTG--TAA---ATCAAG--AGAGAGAAAA-CCCTCATGAATT-TTG-AGAAAAA
gi|7 : C-------A---ATGATTAG---------------------GTTTCCGGACAATAACTT-----GAAAAGTTTACATCTGA-TCTAA
gi|13 : agccgagttgcatcaaagttgaactcggatattgttttgatgatggctggtgagagggcatGAG------------------------GTTTCAGGACAATAACTCCAACAAAAAAAACCCCATCTGA-TTCAAT--------------GTGT-----------GAATG----AGAATCCT-ATTGGTTTTTGGAAAAAggatatgaggttttatcgatat
gi|14 : ATCTGAATTCA--TGAAGACTTTAGGGATATTGTAA---ATCAAGAGAGAGAAAACCCTCATGAATTTTGAGAAAAAaatcatcc
gi|15 : AAAATCCGCCCAAGACCCACGGGCCTCATGGC--TCCACCATTCTGA--GA--TCA-ATGTCAC-T----ATC-ATAATT
gi|3 : CCTCGTGGCGAT-CACCTGTATGAACAAGTTTATTTGTCACGTCGTGG---ATAACTCTT--ATAACGAACAACATTTTGTTACGTTAATGTTATAGGTACGACAA----GAGT-T-T-TTAGTTTACT-GGTAGGT-ATAGGTCGGAACCGTATC-TAGAA---GGGCC--TG-CAAAG---CATAATG-GGCTTT--T-TA-ACTGT-AAGTACGACG-TACGAGTGTTAGT---CGAT--TGCAAAT--TG----AT--A-ATTTTGCGTTAATTT-TACTCTGTT-AATAATTGCTGTTATG--ACAGTTTTG--G--A--AC---AAAAGTGTGTTTGATT-TCGGTGTAGG----ATCTGAATA-ATTATGATAATTAAA-T---GA------T--------------GACGTCCCAAGGTCAC---------TCATGGCTCTACCTGTGCTCAGGAAAAATAAGATTT--GTTAAGAt
gi|25 : gaatatacgcccgtgtgggCCTCATGGC--T-CACCTGTA
gi|6 : aaaatataggtatgcggaTACTTGAAAACATTTT----G-TTA----CAAAT--A--ATAACTCTAAGTGCGCCTTAG--TTCTTACTA-ATACTAC-T---AAC-GTA-TTCATATTATAGGGC--CA-T-GG----CCTCATG-G----C--T-CA-CCTTTCACAGACAATT-----A----TG-T---T-CTGCTAT------TC----AT--ACAAT---------CTT-T
gi|25 : ttAAAATATAGGTA--TG-C-GGA---CCTCATG-G----C--T-CA-CCTGT-Acaca
gi|3 : AATATACGCCCGTG-T-GGG---CCTCGTG-G----CGAT-CA-CCTGT-ATGAACAAGT-TT--A----T--T---T-GT--CACG-----TCGTGGAT--A-ACT---------CTTATAA-C-GAACAACATTT--TGTTACGTTAATGTTATAGGT--ACGAC---AAGAGT-T-TTTAG-T-TTA--CTGG
gi|10 : gATAAAGGCC--TG-C-AGG---CCTAATGCG----C--T-CACCCTGT-ACAGAtaggtataggtcggaaccgtatctagaagggcctgcaaagcataatgggctttttaactgtaagtacgacgtacgagtgttagtcgattgcaaattgataattttgcgttaattttactctgttaataattgctgttatgacagttttggaacaaaagtgtgtttgatttcggtgtaggatctgaataattatgataattaaatgatgacgtcccaaggtcactcatggctctacctgtgctcaggaaaaataagatttgttaaga
gi|11 : ATAAAGGCC--TAAC-AGG---CCTAATG-G----C--T--A-CCTGT-ACAGATA--T-CA--G----TG-TTTGC-AT--T--------TG----ATTAA-ATT---------TTT-TACTT-GTT-AATCTTC--TGTT-----ACAGACATT--TTGA--AC---AAACGT-Tttgattgtgttgcaattgataatttgtactgcgttatattctgtatgacatttgaactatagtgtttat
gi|9 : TAAAGGCC--TG-C-AGGAGGCCTTAAG-G----C--T-CA-CCT-T-ACAGATGATTGTA--G----TG-TTG-C-A---AAT------TG----AT----ATT---------TTT-TACTC-G
gi|15 : AGACC--CA-C-GGG---CCTCATG-G----C--TCCA-CC-AT-TCTGAGA--T-CA--A----TG-T---C-AC--TA-------TC----AT--A-ATT---------tgatattctgtgatgacattctttgaaaccaatagttgtttat
gi|2 : aaaatccgcccaG---TCTCATG-G----C--T-CA-CTTGT-TCGGACAATT-CA--A----GG-T---C-AC--TAT------TC----AT--A-ATT---------CTT-TACTC-AAA-AACTTTT--TGTTA----AAACATATA--T--A--AC---AAAAGT-TGTTCAGTT-TTA--CTAGAT-CTATCTAACCGTATCAAGATA--TAGGCTCGCAGGCCTTATGGCTCACCTGTATGGATGATTTAATGTCACTACATGTATTTATAACT---CTT-TACCT---GAAAACA----Tt
gi|6 : ctaaaaacatcgaaaaagtttaaaaacgtgaggtgtacgggcaataactcccaaaatttacatctgattcaatggaaactttgggatattgttacatgtcaagtgagtgagaaccctattgatttttagaaaaattcttccaaggtcaaggacacagtgacaaaaaactgttttaaaagattgaaaaaaaaatggtttccagacataacgccaatgtttacatctaattcaattgaaagtttgggatattgttacatatcatttgagtgagaaccctattggtttatagaaaaatccgcccaagactcaaaTT-TACTT-GAA-AACATTT--TGTT-----ACAAATA-A--T--A--ACTCTAAGTGC-GCCTTAGTTCTTA--CTA-ATACTA-CTAACatatacataacaaaagttgttaa
gi|2 : AAGGTCAC------TATTCATAATT---CTT-TACTC---AAAAACT----TTTTGTTAAAACATATATAACAAAAGTTGT---TCAGTT-TTACTAGATCTATCTAACCGTAT-CAAGATA-------TAGGCT--CG-CA-GGCCTTATG-GCTCACC-TGT-ATGGA-TGATT-TAATGTCACTACATGTATTTATAACT-----------------CTTTACCTGAAAACATATATACATAACAAAAGTTGTTgtattcatattatagggccatggcctcatggctcacctttcacagacaattatgttctgctattcatacaatctttcaca
gi|6 : ctaaaaacatcgaaaaagtttaaaaacgtgaggtgtacgggcaataactcccaaaatttacatctgattcaatggaaactttgggatattgttacatgtcaagtgagtgagaaccctattgatttttagaaaaattcttccaaggtcaaggacacagtgacaaaaaactgttttaaaagattgaaaaaaaaatggtttccagacataacgccaatgtttacatctaattcaattgaaagtttgggatattgttacatatcatttgagtgagaaccctattggtttatagaaaaatccgcccaagactcaaagtctcatggctcacttgttcggacaattcT-TACTT---GAAAACA----TTTTGTTACAA-ATAAT-AACTCTAAGTGCGCCTTAGTTCTTACTAATACTACTAA--CGTATTCA---TAT----TATAGGGC--CA-TG-GCC-TCATG-GCTCACC-TTTCACAGA-CAATT-ATG------TTCTGCTATTCATAaa
gi|25 : tAATATAGGTA--TG-CG-GACCTCATG-GCTCACC-TGT-Acaatctttcaca
gi|10 : aaAGGCC--TG-CA-GGCCTAATGCGCTCACCCTGT-ACAGATTGATTGTGT------TGCA---ATTGATAA-T-----------------TTGT
gi|11 : ataaAGGCC--TAACA-GGCCTAATG-GCT-ACC-TGT-ACAGA-Tactgcgttatattctgtatgacatttgaactatagtgtttat
gi|9 : ataaAGGCCTGCA-GGAGGCCTTAAG-GCTCACC-T-T-ACAGA-TGATT-atcagtgtttgcatttgattaaattttttacttgttaatcttctgttacagacattttgaacaaacgtt
gi|15 : taaAGACC--CA-CG-GGCCTCATG-GCTCgtagtgttgcaaattgatattttttactcgtgatattctgtgatgacattctttgaaaccaatagttgtttat
gi|2 : aaaatccgcccaTCATG-GCTCACT-TGT-TCGGA-CAATT-CAA------GGTCACTATTCATAATTCTTTACTCAAAAACTTTTTGTTA----AAACATAT-A---TAACAAAAGTTGTTCAGTTTT-ACTAGATCTATCTA--AC---CGTATCAAGAT-ATAGG-CTC---GCAGGCCTTATGGC--TCACCTGT-------ATG---GATGA--TTTAAT----caccattctgagatcaatgtcactatcataattt
gi|6 : ctaaaaacatcgaaaaagtttaaaaacgtgaggtgtacgggcaataactcccaaaatttacatctgattcaatggaaactttgggatattgttacatgtcaagtgagtgagaaccctattgatttttagaaaaattcttccaaggtcaaggacacagtgacaaaaaactgttttaaaagattgaaaaaaaaatggtttccagacataacgccaatgtttacatctaattcaattgaaagtttgggatattgttacatatcatttgagtgagaaccctattggtttatagaaaaatccgcccaagactcaaagtcTTAGTTCTTACTA-A------TACTACTAACGTATTCATATTATAGGGC-C---AT-GGCCTCATGGC--TCACCTgtcactacatgtatttataactctttacctgaaaacatatatacataacaaaagttgttaa
gi|25 : tttacttgaaaacattttgttacaaataataactctaagtgcgccAAAAT-ATAGG-TAT---GCGGACCTCATGGC--TCACCTGT-------Attcacagacaattatgttctgctattcatacaatctttcaca
gi|3 : AT-ATACG-C-CCGTGTGGGCCTCGTGGCGATCACCTGT-------ATG---AACAA--GTTTATTTGTCACGTCGTGGATAACTCTTATAACGAACAACATTTTGTTACGTTA-ATGTTATAGGTACGACAAGAGTTTTT-----AGTT-TACTGGTAGGTA-TAGGTCGGAACCGTAT-CT--AGA----AGGGCC-TG-C---AAAGCATAATG-GGCTTTTTA-ACTGT-A-AGTA-CGACGTACGAGTGT-TAG---TCGATT-GC-A---AATTGAT--AATTTTGCGTTAATTTTACT-CTG--TTAAT-AATTGCTG-TTA-TGACAG------T--TTTGGAA--CAAAAGTGTGTTTGATTTCGGTGTAGGATCTG-AATA---AT--TATGATAA-------TTAA-ATG---ATGACGTCCCAAG--GTCACTCATGGC--TC
gi|2 : gaGTCTCATGGC--TCACTTGTTCGGACAATTCAAGGTCACTATTCAT----AA-TTCTT---TA---CTCA----AAA--ACTTTTTGTTAAA--ACATATAT-AACAA--AAG-----TTGTTC---AGTT-T--TACTAGATC-TATCTA---ACCGTAT-CAAGATA----TAGGCT-CG-C---AG-GCCTTATG-G----CTCA-CCTGT-ATGG-A-TGAT---------T-TAATGTC--ACT-AC-ATGTA-TTTAT--AAC---------TCTTTACC-T-GAAAACAT-A-T----------ATACA-------T-------AA--CAAAAG-TTGTTtacctgtgctcaggaaaaataagatttgttaaga
gi|6 : ctaaaaacatcgaaaaagtttaaaaacgtgaggtgtacgggcaataactcccaaaatttacatctgattcaatggaaactttgggatattgttacatgtcaagtgagtgagaaccctattgatttttagaaaaattcttccaaggtcaaggacacagtgacaaaaaactgttttaaaagattgaaaaaaaaatggtttccagacataacgccaatgtttacatctaattcaattgaaagtttgggatattgttacatatcatttgagtgagaaccctattggtttatagaaaaatccgcccaagactcaaaTT---TA---CTTG----AAA--ACATTTTGTTACA--A-ATAAT--AACTC--TAA-----GTGCGCCTTAGTTCT--TACTA-ATACTA-CTA---A-CGTATTC---ATATTATAGGGCCATG--------GCCTCATG-G----CTCA-CCTTTCACAG-A-CAAT---------T-ATG---T--TCT-GC-T---A-TTCATACAAT---------CTTTCACaa
gi|10 : ---ATA----AAGGCC-TG-C---AG-GCCTAATGCG----CTCACCCTGT-ACAG-ATTGAT---------T---G---T--GTT-GC-A---A-TTGAT--AAT----------TTGTACTGC-G--T-TAT-A-TT-C-T-GTA-TGACA-------T---TTG-AA--CTATAG--TGTTTAa
gi|11 : ---ATA----AAGGCC-TAAC---AG-GCCTAATG-G----CT-A-CCTGT-ACAG-A-TA-----------T-CAG---T--GTTTGC-A---T-TTGATTAAAT---------TTTTTACT-T-G--TTAAT-C-TT-CTG-TTACAGACA-------T--TTTG-AA--CAAAt
gi|25 : ---ATA----TAGGTA-TG-C---GG-ACCTCATG-G----CTCA-CCTGT-Acgtt
gi|9 : aaaTA----AAGGCC-TG-CAGGAG-GCCTTAAG-G----CTCA-CCT-T-ACAG-A-TGAT---------TGTAG---T--GTT-GCAA---A-TTGAT---AT---------TTTTTACT-C-G--TG-AT-A-TT-CTG-TGA-TGACA-------TTCTTTG-AAACCAATAG-TTGTTTA
gi|2 : ---AA-GTCTCATG-G----CTCA-CTTGT-TCGG-A-CAAT---------T-CAA---G--GTC-AC-T---A-TTCAT--AAT---------TCTTTACT-C-A--AAAAC-T-TT-TTG-TTA-AAACA-------T--ATAT-AA--CAAAAG-TTGTTCAGTTT---TACTAGATCTA-TCTA---AC--CGTA-----------TCAAGAT----AT-AGG-CTCGCA--GGC-CTTATGGC--TCACC-TGT---ATGGAt
gi|5 : ctaaaaacatcgaaaaagtttaaaaacgtgaggtgtacgggcaataactcccaaaatttacatctgattcaatggaaactttgggatattgttacatgtcaagtgagtgagaaccctattgatttttagaaaaattcttccaaggtcaaggacacagtgacaaaaaactgttttaaaagattgaaaaaaaaatggtttccagacataacgccaatgtttacatctaattcaattgaaagtttgggatattgttacatatcatttgagtgagaaccctattggtttatagaaaaatccgcccaagactcaTTGTACT-C-GA-TAAATTA-TT-TTTGTTA-CGATACTTATGAT--ATTG-AA--CAAAAA-GTGTT--ATTC----ATGAAATCTAATATTTAAAGATTATAAACTAATCACTTTAA-A-----AT-ATG-CCC-----------TATGCC--TTTTC-TACTTCACAGAAAAAATAATACGAAAA-GCCACCT-CAACTCAGCTGTAGCCCAT-CCCCATTCCTATTGATTTTCAAACCCTAATT-GAAAACTGATTtgatttaatgtcactacatgtatttataactctttacctgaaaacatatatacataacaaaagttgttaa
gi|6 : G--TAT------------TCAT-ATT---AT-AGG-GCCATG--G-C-CTCATGGC--TCACCTTTC---ACAGACAA
gi|25 : tttacttgaaaacattttgttacaaataataactctaagtgcgccttagttcttactaatactactaacAA-ATATAGGT-ATG-C----G--GAC-CTCATGGC--TCACC-Tttatgttctgctattcatacaatctttcaca
gi|3 : aA-ATA----T-ACG-CCCGTGTGGGC-CTCGTGGCGATCACC-TGT---ATGAACAAgta
gi|15 : g-CCCACG--GGC-CTCATGGC--TCgtttatttgtcacgtcgtggataactcttataacgaacaacattttgttacgttaatgttataggtacgacaagagtttttagtttactggtaggtataggtcggaaccgtatctagaagggcctgcaaagcataatgggctttttaactgtaagtacgacgtacgagtgttagtcgattgcaaattgataattttgcgttaattttactctgttaataattgctgttatgacagttttggaacaaaagtgtgtttgatttcggtgtaggatctgaataattatgataattaaatgatgacgtcccaaggtcactcatggctctacctgtgctcaggaaaaataagatttgttaaga
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AAATGACTTAAAAATATGAGGTTTCGCGGTACGCATAACTTCAAAAGTTTACTTATATGTATCTGATCAAACTCTGAAACTGTTGCGCGGAGAATACTG
Unaligned ( gi|16 ): TAGCCGAGTTGTAACGAAGTTGAGTTTGGCTGTTGTCTGATGATGGCTGGTGGTTGGGAGGGCA
Unaligned ( gi|18 ): GCTGCAATGAAGTTGAACTTGGCTATTGTTTTGATGATTATGGAGGGCGGGAGGACGTC
Unaligned ( gi|20 ): TTAGCTGAGTTACATCGAAGTTGAATCGGGCTATTGTTTTGATG
Unaligned ( gi|21 ): GCCGAGTTGCACTCGGCTATTGTTTTGATGATGATAGGCAAGCG
Unaligned ( gi|22 ): GTTGAACTCAGCTGTTGTTTTGATGATGGCAGGCAGGAGGG
Unaligned ( gi|23 ): TTAAATCTAAGGATGTGAGGTTTTATCGATATATCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111 3333333333333333333333333333 1111111111111111111 2222222222222222
lowQualScore : 222 1111111 1111 111 11 11 33333333333 1 11 11 222 11 777777777 1 2 1 1 11 22 22222222 11111 99999999999999999999999999999999999999999999999999999 2222222 11111111 444444444444 1 22 444 4 44 555555 4444444444 11 55 1 4444444444444444444444444444 11 1 222 11 222 1 11 222222 4444 111 2 4444444 4444444444444444444 4 1111111111111111 1 333 22 999999999999999999999999999999999 8888888888888888888 33 1 333 7777777 1 111 1111 33333333333333333 11 11 222222222 11 1 2222222222222 11 33333 8888888888888888888888888888888888888 1 1 22 1 22 1 222 1 2 2 11 2 3333333 2
lowQualScore : 1 7 888 6666666 0000 1 2 444 1 33 33 22222222222 0 22 88 7 0 44 333 22 7 88 999999999 1 55 3 6 0 0 22 2 33 99999999 88 88888 8 8 8 8 1 3 55 9 0 6 11111111111111111111111111111111111111111111111111111 3 5555555 0 3 66666666 4 666666666666 11 888 3 11 7 7 00 333 6 4 2 0 3 11 1 44 6 777777 6 2222222222 2 22 1 55 6 5 6 0000000000000000000000000000 6 88 3 5 444 333 11 000 6 5 4 888 1 88 555555 2222 2 999 2 2 0 6 1111111 22 2222222222222222222 6 6 0 8888888888888888 1 0 555 88 77 2 1 1 888888888888888888888888888888888 4 4444444444444444444 4 3 2 00 5 555 1111111 0 8 8 444 1 8 7777 3 8 2 88888888888888888 11 8 8 8 11 11 666666666 6 6 6 22 3 6 6 77 5555555555555 6 99 44 0 11111 1 2222222222222222222222222222222222222 3 0 3 11 3 6 00 2 333 5 4 0 0 77 0 2 77 4 1111111 4 0
lowQualScore : . . ... ....... .... . . ... . .. .. ........... . .. .. . . .. ... .. . .. ......... . .. . . . . .. . .. ........ .. ..... . . . . . . .. . . . ..................................................... . ....... . . ........ . ............ .. ... . .. . . .. ... . . . . . .. . .. . ...... . .......... . .. . .. . . . ............................ . .. . . ... ... .. ... . . . ... . .. ...... .... . ... . . . . ....... .. ................... . . . ................ . . ... .. .. . . . ................................. . ................... . . . .. . ... ....... . . . ... . . .... . . . ................. .. . . . .. .. ......... . . . .. . . . .. ............. . .. .. . ..... . ..................................... . . . .. . . .. . ... . . . . .. . . .. . ....... . .
lowQualScore : 0 0 555 2222222 6666 0 0 000 0 88 88 88888888888 0 55 33 3 7 77 333 00 3 33 222222222 0 00 3 7 0 0 00 5 00 00000000 88 88888 0 0 0 8 0 5 88 0 7 7 11111111111111111111111111111111111111111111111111111 2 8888888 8 5 00000000 0 333333333333 33 000 3 77 3 3 77 000 0 0 5 0 0 00 0 33 0 555555 0 5555555555 5 00 0 00 0 0 0 0000000000000000000000000000 0 55 0 0 555 000 55 000 0 0 0 000 0 00 000000 5555 5 000 5 5 0 0 0000000 00 0000000000000000000 0 0 0 0000000000000000 0 5 000 55 55 5 0 0 000000000000000000000000000000000 0 5555555555555555555 0 0 5 55 5 000 0000000 0 0 0 000 0 0 0000 2 0 8 44444444444444444 00 0 0 0 00 66 777777777 7 7 7 33 3 7 7 77 5555555555555 7 22 22 8 77777 0 0000000000000000000000000000000000000 3 7 3 00 3 7 00 0 333 0 0 0 0 55 0 5 00 0 5555555 0 0
consensus : NAACTCGGCTATTT--GTTTTGATGAT-------GGC----GGGCGGGCGTCAACGATTAGGTTTCCGGACGA---TAACTCNAAAAGT--TTACATCTG--AT-TC----AN--TTGA-AACTTTA-NGATATTG--TTACGTATTAAGTGAGANAGAA---CCCTANTGATTTTCGGAAAAATT--CGGCCAAGGTCAA---CACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG-GCA-ATAACTCCAAAA-GTTTAC--------ATCTGA-TTCAA---TTGAA-ACT-TT-GGGATATTGTTACATATCAAGTGAGNGAGAACCCTNTTGATTTTCGAGAAAAATCCATCCAAGGTCAAGGTCACAGTGATANAA--------T----GATT-----------------------G------------TTTCCGGACAATAACTCCAA-----AAGTTTNCATCTGATTCAATTGAAA--TTGGGATGTTGTTA--T-ATCA-NTGAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATA--TAAGCTAGTGGG----ATG------CTAT-----------AAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTC----AATCATAT----TTAACAAAAATTGTTTAGTTC-TACTAGA------------TAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANGTCGNNACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAGA-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCTA------------TATAANT---ATAATTA----AATGAT-ACG-CCCANGGGC-CTCATGGCTC-ACCTGCGC---GGA-AAAATAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATACCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
Reference ( family-138 ) : NAACTCGGATATTT--GTTTTGATGAT-------GGC----GGGNGGGCATCAACGATTAGGTTTCCGGACGA---TAACTCNAAAAGT--TTACATCTG--AT-TC----AT--TTGA-AACTTTA-GGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNNTGATTTTCGGAAAAATT--CGGCCAAGGTCANGGACACAGNGANCAAAAAAC-TC-GAAAAAGTTTAAAAACATGAGGTTTC-CGG-ACG-ATAACTCCAAAANGTTTAC--------ATCTGA-TTCAA---TTGAA-ACT-TT-GGGATATTGTTACATATCAAGTGAGNGAGAACCCTATTGATTTTCGAGAAAAATCCGTCCAAGGTCAAGGTCACAGTGACACAA--------T----GATT-----------------------G------------TTTCCGGACAATAACTCCAA-----AAGTTTACATCTGATTCAATTGAAACTTTGGGATATTGTTA-AT-ATCAAGTGAGTGAGAACCCTATTGGTTTTCGGAAAAATCCGCCCAAGACCCACGGGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTA--TACTCGAAAACATTTTGTTAAG-CATATGTAACAAAAGTTGTTTAGTTCTACTAGATCTAN-TAACCGTATCAAAATANAGGCCCGCGGGCCTCATGGCTCACCTGTACGGACGATTCAATGTCACTAC------TCATAATTCTTTACTCGAAAACATTTTGTTAACAGATATATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCGTATCANGATAATTAGGCTCGCGGGCCTTATGGCTCACCTGTATGGACGNCCCAAGGTCACTATTCATAACTCTTTACTCGAAAACATTTTGTTAAAACATANNTAACNNNAGNTGCGCCTCAGTTCTTACTAGNNCTACCNAACCGTATTCAAGATAT----TATAGGCCCGCGGGCCTCATGGCTCACCTGT-ACGGACGATTCGATG--CNNCTATTCATAACTTTGTNNCTGAAAACATATANACATAACAAAAGTTGTTCAGTTCTTACTAGATCTATCTACTACTAA-CGTATCAANATATAGGCC---GCGGGCCTCATGGC--TCACCTGTATGGACGANTTNA----TNACNTCGT---TA---CTTA-AA-----AACATTTTGTTACG--A-ATATT-A--------ACTAAAATTGT-CAGTTTTAC---TAGATATA---C-TAACCGTATC-ATAAAGGCCTG-C-AGG---CCTNATG-G----CTCA-CCTGTACGGA-CGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TATNAGATCTA------------TATAANT---ATAATCA----AAT-AT-ACG-CCCGCGGGC-CTCATGGCTC-ACCTGCAC---GGACAAAATAATACGAAAA-GCCACCT-CAACTCAGCTGTAGCCCAT-CCCCATTCCTATTGATTTTCAAACCCTAATT-GAAAACTGATTT
gi|1 : AACT-GAATATTTATGTTTTGATGAT-------GGC----GGGCGGGCGTCAACAATTAGGTTTCCGGACAA---TAACTCTAAATGT--TAACATCTG--AT-TT----AT--TTGA-AACTTTA-CGATATTA--TTACGTATTAAGTGAGAAAAAA---CCCTAATGATTCTCAGAAAAATT--CGGCCAAGGTCAA------AGTGTCCAAGAAAC-TCAGCAAAAGTCTGAAAACATGATATTTC-TGG-ACA-ATAACTC-AAAACGTTTAC--------ATCTGA-TTCAA---TTGAA-ACT-TT-GCGATATTGTTACATATCAAGTGAGAGAAAACCCTTTTGATTTTCGAAAAAAATCCATCCAAGGTCAAGGTCACAGTGATACAA--------T----GAT------------------------G------------TTTCCGGACAATGACTCGAA-----AAGTGTACATCTGATTCAATTGAAACATTGGGATGTTGTTA-TTCATCAAATGAGTAAGAACCTTATTGATTTTCAGAAAAATCCGTTTAAGGCCCGCAACCCTCATGGCT-CACCTGTATGAACGATTTAATGTCACTA---ATAACTCTTAAATACTTAAAAACATTTTCTTAAGACATATGTAATAAAAGTTGTTTAGCGCTACTAGATCTAAGTAACCGTACCAAAATATAGGCCTGTGGGCCTCATGGCTCACCTGTACGGACAATTTAATATCATTAC------TCATAACTCTTTACTCGAAAACAATTTGTTAACAGATATATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATA--TAAGCTAGTGGG----ATG------CTAT-----------AAGGTCACTATTCATAATTCCTTACTCAAAAACA--TTGTTAAGACATATTGAACACTATTTG---TTTAGTT-TTACAAACTCCATCAAACCGTA-CCAAGATATACAGTGTAGGCCCACGGGCATCATGGCTCATCTGT-ACAGATGATTTAATA--CAGCTATTTATAACTTTGTTC----AATCATAT----TTAACAAAAATTGTTTAGTTC-TACTAGA------------TAACCGTATCAAGATATAAGCC---GTTGGCCTCATGGC--TCACTTGTATTGATGAATTAA----TCA-ATCTT---TA---CTCA-GA-----AACATTTTGATATG--ACATATTGA--------ACTAACATTGTGAAGTTTTAT---TAGATATAT--C-TCATCGTATC-ATAAAGGCCTG-C-AAG---CCTAATA-G----CTCA-CCTGTACAGA-TGAT---------T-TAGC--ATT-GC-AA-TTAAT--AATG---------TTTTACT-C-G-TACAT-ATT-CT-TTTA-AGACA-T--AT-------T-GAA--CAAAAGA-TGTTTAATTT---TGCGAGATCTA------------TATTAGT---AT-GTTA----AATAAT-ATG-CCCACGGGC-CTCATGGCTC-ATCTACAC---GGACAAAACACTTCGAAAATATTACCTGCAACTCGGCTGTAG--CATACCTGAAGCCTTTTGATTTT-------TGTTTGGAAAATTGATCT
gi|10 : a-ATAAAGGCCTG-C-AGG---CCTAATGCG----CTCACCCTGTACAGATTGAT---------T---GT--GTT-GC-AA-TTGAT--AA-T---------TTGTACTGC-G-TT-AT-ATT-CT-G-TA-TGACA----TT-------T-GAA--CTATAG--TGTTTAc
gi|11 : -ATAAAGGCCTAAC-AGG---CCTAATG-G----CT-A-CCTGTACAGA-TA-----------T-CAGT--GTTTGC-AT-TTGATTAAATT---------TTTTACT-T-G-TTAAT-CTT-CT-GTTACAGACA-T--TT-------T-GAA--CAAACGT-Tt
gi|12 : TTAAAAATATGAGGTTTCGCGGTACGCATAACTTCAAAA-GTTTACTTATATGTATCTGA--TCAAACTCTGAA-ACTGTT-G
gi|13 : aaatgac-----------------------G------------TTTCAGGACAATAACTCCAACAAAAAAAACCCCATCTGATTCAA-----------------TGT-----------GTGAATGAGAATCCTATTGGTTTTTGGAAAAAcgcggagaatactg
gi|14 : gag--------ATCTGAATTCA-----TGAAGACT-TTAGGGATATTGTAA---ATCAAGAGAGAGAAAACCCTCATGAATTTTGAGAAAAAaatcatcc
gi|15 : AAAATCCGCCCAAGACCCACGGGCCTCATGGCTCCACCATTCTGA--GA-TCAATGTCACTAT-CATAATT
gi|17 : TT--GCTTTGATGAT-------GAT----GGGTGGGCATCAACAATTAGGTTTCCAGACt
gi|18 : tagccaagttgcaaggagAACTTGGCTATT---GTTTTGATGATTATGGAGGGC----GGGAGGACGTC
gi|19 : gctgcaatgaagttgTT--GTTTTGATG-T-------GGT----TGTGGGGCGTCAACAATTAAATTTCCGGACGA---CAACT
gi|2 : AAAAACATC-GAAAAAGTTTAAAAACGTGAGGTGTA-CGG-GCA-ATAACTCCCAAAA-TTTAC--------ATCTGA-TTCAA---TGGAA-ACT-TT-GGGATATTGTTACATGTCAAGTGAGTGAGAACCCTATTGATTTTT-AGAAAAATTCTTCCAAGGTCAAGGACACAGTGACAAAAAACTGTTTTAAAAGATT-----------------------GAAAAAAAAATGGTTTCCAGACA-TAACGCCAA-----T-GTTTACATCTAATTCAATTGAAAGTTTGGGATATTGTTACAT-ATCATTTGAGTGAGAACCCTATTGGTTTATAGAAAAATCCGCCCAAGACTCA-AAGTCTCATGGCT-CACTTGTTCGGACAATTCAAGGTCACTATTCATAATTCTT---TACTCAAAAACTTTTTGTTAAAACATATATAACAAAAGTTGTTCAGTTTTACTAGATCTATCTAACCGTATCAAGATATAGGCTCGCAGGCCTTATGGCTCACCTGTATGGATGATTTAATGTCACTACATGTATTTATAACTCTTTACCTGAAAACAT---------ATATACATAACAAAAGTTGTT
gi|21 : ctACTCGGCTATT---GTTTTGATGAT-------GAT----AGGCAAGCaa
gi|22 : gccgagttgcAACTCAGCTGTT---GTTTTGATGAT-------GGC----AGGCAGGg
gi|24 : gttgAACTCGGCTATT---GTTTTAATGAT-------GGC----GGGAGGGCATCaggg
gi|25 : AAAATATAGGTATGCGGACCTCATGGCTCACCTGTA
gi|3 : ATATACGCCCGTGTGGGCCTCGTGGCGATCACCTGTATGAACAAGTTTATTTGTCACGTCGTGGATAACTCTTATAACGAACAACATTTTGTTACGTTA-ATGTT-ATAGGTACGACAAGAGTTTT-TAG-TTTACTGGTAGGTATAGGTCGGAACCGTATCTAGAAGGGCCTG-CAAAG---CATAATG-GGCTTTTTA-ACTGTAAGTA-CGACGTACGAGTGT-TAGTCGATT-GCAAA-TTGAT--AATTTTGCGTTAATTTTACT-CTG-TTAATAATTGCT-GTTA-TGACAGT--TT-------TGGAA--CAAAAGTGTGTTTGATTTCGGTGTAGGATCTG------------AATAATTATGATAATTA----AATGATGACGTCCCAAGGTCACTCATGGCTCTACCTGTGCTCAGGA-AAAATAA
gi|4 : gaATGAGGTTTCCGGACGA---TAACTTAAAAAGT--TTACATCTG--AT-TC----AA--TTGA-AACTTTG-GGATATTG--TTACATATTTAGTGATAGAGAA---CCCTATTGATTTTCGGAAAAATC--TGGTCAAGGT------CACAAAGACCAAAAAAC-TCTGAAAAAATCTAAAAACATGAGGTTTC-CGG-GCA-ATAACTCCAAAA-GTTTAC--------TTCTGA-TTCAA---ATGAA-ACT-TT-GGAATATTATTAAATATCAAGTGAGTGAGAACCCTATTGATTTTCG-GAAAAATCCATCCAAGATCAAGGTCACAGTGATAGAA--------T----AACTTCGAAAAAATTTGAGAAAATGGGG------------TTTCCGGACAATAACTCCAA-----AAGTTTTCACCCGATTCAgatttgttaaga
gi|5 : ac---------TTGTACT-C-GATAAATTATT-TTTGTTA-CGATA-C--TTATGATATT-GAA--CAAAAAG-TGTT--ATTC----ATGAAATCTAATATTTAAAGATTATAAAC----TAATCACTTTAAA-AT-ATG-CCC-TATGC-CTTTT--CT--ACTT-CAC---AGAAAAAATAATACGAAAA-GCCACCT-CAACTCAGCTGTAGCCCAT-CCCCATTCCTATTGATTTTCAAACCCTAATT-GAAAACTGATTT
gi|6 : TTTACTTGAAAACATTTTGTTACAA-ATA-ATAACTCTAAGTGCGCCTTAGTTCTTACTAATACTACTAA--CGTATTC---ATAT----TATAGGGCCAT-GGCCTCATGGCTCACCTTTCACAGACAATT--ATGTTCTGCTATTCATA
gi|7 : AACTCGGATATT---GTTTTGATGAT-------GGCTGGTGAGAGGGCATCAATGATTAGGTTTCCGGACAA---TAACTTGAAAAGT--TTACATCTG--AT-CTAAGGAT--ATGA-GGTTTTATCGATATcaatctttcaca
gi|8 : agccgagttgcatcaaagttgTTCCGGACGACTCTAAATCCAAAAATAGTTACTTCTATAATATC----AAAATTGATAACTTTA-GGGAATTGGATT-CAAATCAAGATCGGCAGAAAGTCCCTTGTGAT-TTCGGAAAAAATGCCAGCCAAGGTCA
gi|9 : TAAAGGCCTG-C-AGGAGGCCTTAAG-G----CTCA-CCT-TACAGA-TGAT---------TGTAGT--GTT-GC-AAATTGAT--A-TT---------TTTTACT-C-G-TG-AT-ATT-CT-GTGA-TGACA-TTCTT-------T-GAAACCAATAGT-TGTTTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAGCCGAGTTGTAACGAAGTTGAGTTTGGCTGTTGTCTGATGATGGCTGGTGGTTGGGAGGGCA
Unaligned ( gi|20 ): TTAGCTGAGTTACATCGAAGTTGAATCGGGCTATTGTTTTGATG
Unaligned ( gi|23 ): TTAAATCTAAGGATGTGAGGTTTTATCGATATATCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1111111 1111 222222 11 6666 1 2 111 1111 11 22222222 111111 2222 11 111 1 66666666666666666666666666666666666666666666666666666666666 2222222 6666666666666666666666666666666666 1 22 222 333333 3333333333 11 1 111 222 1 11 222222 2222 1 1 11 11 222 11 2222 1 22222222 33333333 2222 4444444444 11 1 222 333 1 111 1111 333333333333 11 11 222222222 11 1 2222222222222 11 3333 1 88888888888888888888888888 11 1 1 1 1111 22 1 222 1 1 1 1 11 1 3333333 1
lowQualScore : 1 888 6666666 0 3 0000 2 11 0 888888 44 4 2 1 1 0000 1 1 3 6 8 444 4444 11 44444444 222222 2222 6 6 6 6 11 55 1 1 1 444 22 0 3 0 99999999999999999999999999999999999999999999999999999999999 3 5555555 0 1 9999999999999999999999999999999999 77 3 11 7 7 00 111 1 1 2 22 11 000000 9999999999 1 88 2 5 777 1 22 000 5 1 1 88 444444 3333 1 5 1 1 5 88 88 1 1 000 1 88 1 1 4444 5 1 33333333 00000000 1 4444 0000000000 1 2 1 66 5 000 33 111 0 8 8 444 8 7777 3 8 8 8 0 444444444444 11 8 8 8 11 11 666666666 6 6 6 22 3 6 6 77 5555555555555 6 99 44 0 0000 0 3 88888888888888888888888888 11 3 0 3 3 1 6666 6 00 2 0 333 3 3 1 5 5 77 3 5 22 1 1111111 1 5
lowQualScore : . ... ....... . . .... . .. . ...... .. . . . . .... . . . . . ... .... .. ........ ...... .... . . . . .. .. . . . ... .. . . . ........................................................... . ....... . . .................................. .. . .. . . .. ... . . . .. .. ...... .......... . .. . . ... . .. ... . . . .. ...... .... . . . . . .. .. . . ... . .. . . .... . . ........ ........ . .... .......... . . . .. . ... .. ... . . . ... . .... . . . . . ............ .. . . . .. .. ......... . . . .. . . . .. ............. . .. .. . .... . . .......................... .. . . . . . .... . .. . . ... . . . . . .. . . .. . ....... . .
lowQualScore : 0 555 2222222 2 4 6666 0 77 7 777777 33 0 5 0 0 5555 0 0 3 7 0 000 8888 00 22222222 777777 7777 7 7 7 7 00 88 0 4 0 000 00 8 8 0 11111111111111111111111111111111111111111111111111111111111 2 8888888 8 0 0000000000000000000000000000000000 33 3 77 3 3 77 555 0 0 5 00 77 000000 5555555555 0 55 5 0 555 0 00 000 0 0 0 00 555555 5555 0 0 0 0 0 55 55 0 0 555 0 00 0 0 0000 0 0 55555555 55555555 0 5555 5555555555 0 5 0 00 5 555 55 000 0 0 0 000 0 0000 2 0 0 0 8 888888888888 00 0 0 0 00 66 777777777 7 7 7 33 3 7 7 77 5555555555555 7 22 22 8 7777 7 3 00000000000000000000000000 00 3 7 3 3 0 7777 7 00 0 7 333 3 3 0 5 0 55 0 0 00 0 5555555 0 0
consensus : NAACTCGGCTATTT--GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAA--CAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGATT-----------------------G------------TTTCCGGACAATAACTCCAA-----AAGTTTNCATCTGATTCAATTGAAA--TTGGGATGTTGTTA--T--ATCAN-T-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCTA-TAT-----NATT---ATAA----------TTAAATGAT-ACG-CCC-ACGG-C-CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
Reference ( family-138 ) : NAACTCGGCTATTT--GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTCNAAAAGTTTACATCTGATTCA---NT-TGAAACTTTA-NGATATTGTTACGTATTAAGTGAGANAGAACCCTANTGATTTTCGGAAAAATTCGGCCAAGGTCAACACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGATT-----------------------G------------TTTCCGGACAATAACTCCAA-----AAGTTTNCATCTGATTCAATTGAAA--TTGGGATGTTGTTA--T--ATCAN-T-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANGTCGNNACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCTA-TAT-----AANT---ATAA----------TTAAATGAT-ACG-CCC-ANGGGC-CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATACCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
gi|1 : AACT-GAATATTTATGTTTTGATGAT-------GGCGGGCG----GGCGTCAACAATTAGGTTTCCGGACAATAACTCTAAATGTTAACATCTGATTTA---TT-TGAAACTTTA-CGATATTATTACGTATTAAGTGAGAAAAAACCCTAATGATTCTCAGAAAAATTCGGCCAAGGTCAA---AGTGTCCAAGAAAC-TCAGCAAAAGTCTGAAAACATGATATTTC-TGG---ACAA---TAACTCAAAACGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GCGATATTG--TTACATATCAAGTGAGAGAAAA---CCCTTTTGATTTTCGAAAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TACAATGAT------------------------G------------TTTCCGGACAATGACTCGAA-----AAGTGTACATCTGATTCAATTGAAACATTGGGATGTTGTTA--TTCATCAAAT-GAGTAAGAACCTTATTGATTTTCAGAAAAATCCGTTTAAGGCCCGCAACCCTCATGGCT-CACCTGTATGAACGATTTAATGTCACTA---ATAACTCTTAAATACTTAAAAACATTTTCTTAAGACATATGTAATAAAAGTTGTTTAGCGCTACTAGATCTAAGTAACCGTACCAAAATATAGGCCTGTGGGCCTCATGGCTCACCTGTACGGACAATTTAATATCATTAC------TCATAACTCTTTACTCGAAAACAATTTGTTAACAGATATATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCAAAAACA--TTGTTAAGACATATTGAACACTATTTG---TTTAGTT-TTACAAACTCCATCAAACCGTA-CCAAGATATACAGTGTAGGCCCACGGGCATCATGGCTCATCTGT-ACAGATGATTTAATA--CAGCTATTTATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATAAGCC---GTTGGCCTCATGGC--TCACTTGTATTGATGAATTAA----TCA-ATCTT---TA---CTCA-GA-----AACATTTTGATATG--ACATATTGA--------ACTAACATTGTGAAGTTTTAT---TAGATATATCTC---ATCGTATC-ATAAAGGCCTG-C-AAG---CCTAATA-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGC--ATT-GC-AA-TTAAT--AATG---------TTTTACT-C-G-TACAT-ATT-CT-TTTA-AGACA-T--AT-------T-GAA--CAAAAGA-TGTTTAATTT---TGCGAGATCTA-TAT-----TAGT---AT-G----------TTAAATAAT-ATG-CCC-ACGGGC-CTCATGGCTC-ATCTACAC---GGACAAAA-CACTTCGAAAATATTACCTGCAACTCGGCTGTAG--CATACCTGAAGCCTTTTGATTTT-------TGTTTGGAAAATTGATCT
gi|10 : a-ATAAAGGCCTG-C-AGG---CCTAATGCG----CTCACCCTGTACAG-ATTGAT---------T---GT--GTT-GC-AA-TTGAT--AA-T---------TTGTACTGC-G-TT-AT-ATT-CT-G-TA-TGACA----TT-------T-GAA--CTATAG--TGTTTAc
gi|11 : -ATAAAGGCCTAAC-AGG---CCTAATG-G----CT-A-CCTGTACAG-A-TA-----------T-CAGT--GTTTGC-AT-TTGATTAAATT---------TTTTACT-T-G-TTAAT-CTT-CT-GTTACAGACA-T--TT-------T-GAA--CAAACGT-Tt
gi|12 : TAAAAATATGAGGTTTCGCGGTACGCA----TAACTTCAAAAGT--TTACTTATATGTATCTG--A---TCAAACTCTGA-A-ACTGTT-G
gi|13 : aaatgact-----------------------G------------TTTCAGGACAATAACTCCAACAAAAAAAACCCCATCTGATTCAAT-----------------GT-----------G-T-GAATGAGAATCCTATTGGTTTTTGGAAAAAcgcggagaatactg
gi|14 : gag--------ATCTG--AAT-TCA-----TGA-AGACT-TTAGGGATATTG--TAA---ATCAAGAGAGAGAAAA---CCCTCATGAATTTTGAGAAAAAaatcatcc
gi|15 : AAAATCCGCCCAAGACCCACGGGCCTCATGGCTCCACCATTCTGA--GA-TCAATGTCACTAT-CATAATT
gi|17 : TT--GCTTTGATGAT-------GATGGGTG----GGCATCAACAATTAGGTTTCCAGACt
gi|18 : tagccaagttgcaaggagAACTTGGCTATT---GTTTTGATGATTATGGAGGGCGGGAG----GACGTC
gi|19 : gctgcaatgaagttgTT--GTTTTGATG-T-------GGTTGTGG----GGCGTCAACAATTAAATTTCCGGACGACAACT
gi|2 : AAAAACATC-GAAAAAGTTTAAAAACGTGAGGTGTA-CGG---GCAA---TAACTCCCAAAAT--TTAC--------ATCTG--A-T-TCAA---TGGA-A-ACT-TT-GGGATATTG--TTACATGTCAAGTGAGTGAGAA---CCCTATTGATTTTT-AGAAAAAT-TCTTCCAAGGTCAAGGACACAGTGACAAAAAACTGTTTTAAAA-GATT-----------------------GAAAAAAAAATGGTTTCCAGACA-TAACGCCAA-----T-GTTTACATCTAATTCAATTGAAAGTTTGGGATATTGTTACAT--ATCAT-TTGAGTGAGAACCCTATTGGTTTATAGAAAAATCCGCCCAAGACTCA-AAGTCTCATGGCT-CACTTGTTCGGACAATTCAAGGTCACTATTCATAATTCTT---TACTCAAAAACTTTTTGTTAAAACATATATAACAAAAGTTGTTCAGTTTTACTAGATCTATCTAACCGTATCAAGATATAGGCTCGCAGGCCTTATGGCTCACCTGTATGGATGATTTAATGTCACTACATGTATTTATAACTCTTTACCTGAAAACAT---------ATATACATAACAAAAGTTGTT
gi|21 : ctACTCGGCTATT---GTTTTGATGAT-------GATAGGCA----AGCGaa
gi|22 : gccgagttgcAACTCAGCTGTT---GTTTTGATGAT-------GGCAGGCA----GG
gi|24 : gttgAACTCGGCTATT---GTTTTAATGAT-------GGCGGGAG----GGCATCaggg
gi|25 : AAAATATAGGTATGCGGACCTCATGGCTCACCTGTA
gi|3 : ATATACGCCCGTGTGGGCCTCGTGGCGATCACCTGTATGAACAAGTTTATTTGTCACGTCGTGGATAACTCTTATAACGAACAACATTTTGTTACGTTA-ATGTT-ATAGGTACGACAAGAGTTTT-TAG-TTTACTGGTAGGTATAGGTCGGAACCGTATCTAGAAGGGCCTG-CAAAG---CATAATG-GGCTTTTTA-ACTGTA-AGTA-CGACGTACGAGTGT-TAGTCGATT-GCAAA-TTGAT--AATTTTGCGTTAATTTTACT-CTG-TTAATAATTGCT-GTTA-TGACAGT--TT-------TGGAA--CAAAAGTGTGTTTGATTTCGGTGTAGGATCTG-AAT-----AATTATGATAA----------TTAAATGATGACGTCCC-AAGGTCACTCATGGCTCTACCTGTGCTCAGGA-AAAA-TAA
gi|4 : gaATGAGGTTTCCGGACGATAACTTAAAAAGTTTACATCTGATTCA---AT-TGAAACTTTG-GGATATTGTTACATATTTAGTGATAGAGAACCCTATTGATTTTCGGAAAAATCTGGTCAAGGTCA---CAAAGACCAAAAAAC-TCTGAAAAAATCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------TTCTG--A-T-TCAA---ATGA-A-ACT-TT-GGAATATTA--TTAAATATCAAGTGAGTGAGAA---CCCTATTGATTTTCG-GAAAAAT-CCATCCAAGATCAAGGTCACAGTGA-------------TAGAATAACTTCGAAAAAATTTGAGAAAATGGGG------------TTTCCGGACAATAACTCCAA-----AAGTTTTCACCCGATTCAgatttgttaaga
gi|5 : ac---------TTGTACT-C-GATAAATTATT-TTTGTTA-CGATA-C--TTATGATATT-GAA--CAAAAAG-TGTT--ATTC----ATGAAATCTAATATTTAAAGATT---ATAAACTAATCACTTTAAA--AT-ATG-CCCTATG--C-CTTTT--CT--ACTT-CAC---AGA-AAAAATAATACGAAAA-GCCACCT-CAACTCAGCTGTAGCCCATCCCC-ATTCCTATTGATTTTCAAACCCTAATT-GAAAACTGATTT
gi|6 : TTACTTGAAAACATTTTGTTACAA-ATA-ATAACTCTAAGTGCGCCTTAGTTCTTACTAATACTACTAA--CGTATTC---ATAT----TATAGGGCCAT-GGCCTCATGGCTCACCTTTCACAGACAATT--ATGTTCTGCTATTCATA
gi|7 : tAACTCGGATATT---GTTTTGATGAT-------GGCTGGTGAGAGGGCATCAATGATTAGGTTTCCGGACAATAACTTGAAAAGTTTACATCTGATCTAAGGATATGAGGTTTTATCGATATcaatctttcaca
gi|8 : agccgagttgcatcaaagttgTTC-CGG---ACGACTCTAAATCCAAAAATAGTTAC--------TTCTATAA-TATCAAAA-TTGATA-ACT-TT-AGGGAATTGGATT-CAAATCAAGATCGGCAGAAAGTCCCTTGTGATTT-CGGAAAAAATGCCAGCCAAGGTCA
gi|9 : TAAAGGCCTG-C-AGGAGGCCTTAAG-G----CTCA-CCT-TACAG-A-TGAT---------TGTAGT--GTT-GC-AAATTGAT--A-TT---------TTTTACT-C-G-TG-AT-ATT-CT-GTGA-TGACA-TTCTT-------T-GAAACCAATAGT-TGTTTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAGCCGAGTTGTAACGAAGTTGAGTTTGGCTGTTGTCTGATGATGGCTGGTGGTTGGGAGGGCA
Unaligned ( gi|20 ): TTAGCTGAGTTACATCGAAGTTGAATCGGGCTATTGTTTTGATG
Unaligned ( gi|23 ): TTAAATCTAAGGATGTGAGGTTTTATCGATATATCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1111111 1111 222222 1 222 1 2 111 1111 11 22222222 111111 2222 11 111 1 66666666666666666666666666666666666666666666666666666666666 22222 33333333333 555555555555555555 1 22 222 333333 3333333333 11 1 111 222 1 11 222222 2222 1 1 11 11 222 11 2222 1 22222222 33333333 2222 4444444444 11 1 222 222 1 111 1111 333333333333 11 11 222222222 11 1 2222222222222 11 3333 1 88888888888888888888888888 11 1 1 2222222 22 1 222 1 1 1 1 11 1 3333333 1
lowQualScore : 1 888 6666666 0 3 0000 2 1 777777 3 1 1 1 111 1 1 3 6 8 444 4444 11 44444444 222222 2222 6 6 6 6 11 55 1 1 1 444 22 0 3 0 99999999999999999999999999999999999999999999999999999999999 3 55555 3 0 1 77777777777 222222222222222222 77 3 11 7 7 00 111 1 1 2 22 11 000000 9999999999 1 88 2 5 777 1 22 000 5 1 1 88 444444 3333 1 5 1 1 5 88 88 1 1 000 1 88 1 1 4444 5 1 33333333 00000000 1 4444 0000000000 1 2 1 66 5 000 22 000 0 8 8 444 8 7777 3 8 8 8 0 444444444444 11 8 8 8 11 11 666666666 6 6 6 22 3 6 6 77 5555555555555 6 99 44 0 0000 0 3 22222222222222222222222222 11 3 0 3 2222222 6 00 2 0 333 3 3 1 5 5 77 1 5 22 1 1111111 1 5
lowQualScore : . ... ....... . . .... . . ...... . . . . ... . . . . . ... .... .. ........ ...... .... . . . . .. .. . . . ... .. . . . ........................................................... . ..... . . . ........... .................. .. . .. . . .. ... . . . .. .. ...... .......... . .. . . ... . .. ... . . . .. ...... .... . . . . . .. .. . . ... . .. . . .... . . ........ ........ . .... .......... . . . .. . ... .. ... . . . ... . .... . . . . . ............ .. . . . .. .. ......... . . . .. . . . .. ............. . .. .. . .... . . .......................... .. . . . ....... . .. . . ... . . . . . .. . . .. . ....... . .
lowQualScore : 0 555 2222222 2 4 6666 0 0 333333 3 0 0 0 555 0 0 3 7 0 000 8888 00 22222222 777777 7777 7 7 7 7 00 88 0 4 0 000 00 8 8 0 11111111111111111111111111111111111111111111111111111111111 2 00000 2 8 0 33333333333 333333333333333333 33 3 77 3 3 77 555 0 0 5 00 77 000000 5555555555 0 55 5 0 555 0 00 000 0 0 0 00 555555 5555 0 0 0 0 0 55 55 0 0 555 0 00 0 0 0000 0 0 55555555 55555555 0 5555 5555555555 0 5 0 00 5 555 00 555 0 0 0 000 0 0000 2 0 0 0 8 888888888888 00 0 0 0 00 66 777777777 7 7 7 33 3 7 7 77 5555555555555 7 22 22 8 7777 7 3 33333333333333333333333333 00 3 7 3 0000000 7 00 0 7 333 3 3 0 5 0 55 0 0 00 0 5555555 0 0
consensus : NAACTCGGCTATTT--GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGACT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCTA-TATT-----ATT---ATAA----------TTAAATGAT-ACG-CCCAA-GGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
Reference ( family-138 ) : NAACTCGGCTATTT--GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGATT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCTA-TATN-----ATT---ATAA----------TTAAATGAT-ACG-CCCAC-GGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
gi|1 : AACT-GAATATTTATGTTTTGATGAT-------GGCGGGCG----GGCGTCAACAATTAGGTTTCCGGACAATAACTCTAAATGTTAACATCTGATTTA---TT-TGAAACTTTA-CGATATTATTACGTATTAAGTGAGAAAAAACCCTAATGATTCTCAGAAAAATTCGGCCAAGGTCAA-AGTGTCCAAGAAAC-TCAGCAAAAGTCTGAAAACATGATATTTC-TGG---ACAA---TAACTCAAAACGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GCGATATTG--TTACATATCAAGTGAGAGAAAA---CCCTTTTGATTTTCGAAAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TACAATGA-T-----------------------G------------TTTCCGGACAATGACTCG-----AAAAGTGTACATCTGATTCAATTGAAACA--TTGGGATGTTGTTA--TTCATCAAAT-GAGTAAGAACCTTATTGATTTTCAGAAAAATCCGTTTAAGGCCCGCAACCCTCATGGCT-CACCTGTATGAACGATTTAATGTCACTA---ATAACTCTTAAATACTTAAAAACATTTTCTTAAGACATATGTAATAAAAGTTGTTTAGCGCTACTAGATCTAAGTAACCGTACCAAAATATAGGCCTGTGGGCCTCATGGCTCACCTGTACGGACAATTTAATATCATTAC------TCATAACTCTTTACTCGAAAACAATTTGTTAACAGATATATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCAAAAACA--TTGTTAAGACATATTGAACACTATTTG---TTTAGTT-TTACAAACTCCATCAAACCGTA-CCAAGATATACAGTGTAGGCCCACGGGCATCATGGCTCATCTGT-ACAGATGATTTAATA--CAGCTATTTATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATAAGCC---GTTGGCCTCATGGC--TCACTTGTATTGATGAATTAA----TCA-ATCTT---TA---CTCA-GA-----AACATTTTGATATG--ACATATTGA--------ACTAACATTGTGAAGTTTTAT---TAGATATATCTC---ATCGTATC-ATAAAGGCCTG-C-AAG---CCTAATA-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGC--ATT-GC-AA-TTAAT--AATG---------TTTTACT-C-G-TACAT-ATT-CT-TTTA-AGACA-T--AT-------T-GAA--CAAAAGA-TGTTTAATTT---TGCGAGATCTA-TATT-----AGT---AT-G----------TTAAATAAT-ATG-CCCACGGGC--CTCATGGCTC-ATCTACAC---GGACAAAA-CACTTCGAAAATATTACCTGCAACTCGGCTGTAG--CATACCTGAAGCCTTTTGATTTT-------TGTTTGGAAAATTGATCT
gi|10 : a-ATAAAGGCCTG-C-AGG---CCTAATGCG----CTCACCCTGTACAG-ATTGAT---------T---GT--GTT-GC-AA-TTGAT--AA-T---------TTGTACTGC-G-TT-AT-ATT-CT-G-TA-TGACA----TT-------T-GAA--CTATAG--TGTTTAc
gi|11 : -ATAAAGGCCTAAC-AGG---CCTAATG-G----CT-A-CCTGTACAG-A-TA-----------T-CAGT--GTTTGC-AT-TTGATTAAATT---------TTTTACT-T-G-TTAAT-CTT-CT-GTTACAGACA-T--TT-------T-GAA--CAAACGT-Tt
gi|12 : TAAAAATATGAGGTTTCGCGGTACGCA----TAACTTCAAAAGT--TTACTTATATGTATCTG--A---TCAAACTCTGA-A-ACTGTT-G
gi|13 : aaatgact-----------------------G------------TTTCAGGACAATAACTCCAACAAAAAAAACCCCATCTGATTCA----------------ATGT---------------GT-GAATGAGAATCCTATTGGTTTTTGGAAAAAcgcggagaatactg
gi|14 : gag--------ATCTG--AAT-TCA-----TGA-AGACT-TTAGGGATATTG--TAA---ATCAAGAGAGAGAAAA---CCCTCATGAATTTTGAGAAAAAaatcatcc
gi|15 : AAAATCCGCCCAAGACCCACGGGCCTCATGGCTCCACCATTCTGA--GA-TCAATGTCACTAT-CATAATT
gi|17 : TT--GCTTTGATGAT-------GATGGGTG----GGCATCAACAATTAGGTTTCCAGACt
gi|18 : tagccaagttgcaaggagAACTTGGCTATT---GTTTTGATGATTATGGAGGGCGGGAG----GACGTC
gi|19 : gctgcaatgaagttgTT--GTTTTGATG-T-------GGTTGTGG----GGCGTCAACAATTAAATTTCCGGACGACAACT
gi|2 : AAAAACATC-GAAAAAGTTTAAAAACGTGAGGTGTA-CGG---GCAA---TAACTCCCAAAAT--TTAC--------ATCTG--A-T-TCAA---TGGA-A-ACT-TT-GGGATATTG--TTACATGTCAAGTGAGTGAGAA---CCCTATTGATTTTT-AGAAAAAT-TCTTCCAAGGTCAAGGACACAGTGACAAAAAACTGTTTTAAAA-GATT-----------------------GAAAAAAAAATGGTTTCCAGACA-TAACGCC-----AAT-GTTTACATCTAATTCAATTGAA--AGTTTGGGATATTGTTACAT--ATC-ATTTGAGTGAGAACCCTATTGGTTTATAGAAAAATCCGCCCAAGACTCA-AAGTCTCATGGCT-CACTTGTTCGGACAATTCAAGGTCACTATTCATAATTCTT---TACTCAAAAACTTTTTGTTAAAACATATATAACAAAAGTTGTTCAGTTTTACTAGATCTATCTAACCGTATCAAGATATAGGCTCGCAGGCCTTATGGCTCACCTGTATGGATGATTTAATGTCACTACATGTATTTATAACTCTTTACCTGAAAACAT---------ATATACATAACAAAAGTTGTT
gi|21 : ctACTCGGCTATT---GTTTTGATGAT-------GATAGGCA----AGCGaa
gi|22 : gccgagttgcAACTCAGCTGTT---GTTTTGATGAT-------GGCAGGCA----GG
gi|24 : gttgAACTCGGCTATT---GTTTTAATGAT-------GGCGGGAG----GGCATCaggg
gi|25 : AAAATATAGGTATGCGGACCTCATGGCTCACCTGTA
gi|3 : ATATACGCCCGTGTGGGCCTCGTGGCGATCACCTGTATGAACAAGTTTATTTGTCACGTCGTGGATAACTCTTATAACGAACAACATTTTGTTACGTTA-ATGTT-ATAGGTACGACAAGAGTTTT-TAG-TTTACTGGTAGGTATAGGTCGGAACCGTATCTAGAAGGGCCTG-CAAAG---CATAATG-GGCTTTTTA-ACTGTA-AGTA-CGACGTACGAGTGT-TAGTCGATT-GCAAA-TTGAT--AATTTTGCGTTAATTTTACT-CTG-TTAATAATTGCT-GTTA-TGACAGT--TT-------TGGAA--CAAAAGTGTGTTTGATTTCGGTGTAGGATCTG-AATA-----ATTATGATAA----------TTAAATGATGACGTCCCAA-GGTCACTCATGGCTCTACCTGTGCTCAGGA-AAAA-TAA
gi|4 : gaATGAGGTTTCCGGACGATAACTTAAAAAGTTTACATCTGATTCA---AT-TGAAACTTTG-GGATATTGTTACATATTTAGTGATAGAGAACCCTATTGATTTTCGGAAAAATCTGGTCAAGGTC-ACAAAGACCAAAAAAC-TCTGAAAAAATCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------TTCTG--A-T-TCAA---ATGA-A-ACT-TT-GGAATATTA--TTAAATATCAAGTGAGTGAGAA---CCCTATTGATTTTCG-GAAAAAT-CCATCCAAGATCAAGGTCACAGTGA-------------TAGAATAACTTCGAAAAAATTTGAGAAAATGGGG------------TTTCCGGACAATAACTCC-----AAAAGTTTTCACCCGATTCAgatttgttaaga
gi|5 : ac---------TTGTACT-C-GATAAATTATT-TTTGTTA-CGATA-C--TTATGATATT-GAA--CAAAAAG-TGTT--ATTC----ATGAAATCTAATATTTAAAGATT---ATAAACTAATCACTTTAAA--AT-ATG-CCCTA-TGC--CTTTT--CT--ACTT-CAC---AGA-AAAAATAATACGAAAA-GCCACCT-CAACTCAGCTGTAGCCCATCCCC-ATTCCTATTGATTTTCAAACCCTAATT-GAAAACTGATTT
gi|6 : TTACTTGAAAACATTTTGTTACAA-ATA-ATAACTCTAAGTGCGCCTTAGTTCTTACTAATACTACTAA--CGTATTC---ATAT----TATAGGGCCAT-GGCCTCATGGCTCACCTTTCACAGACAATT--ATGTTCTGCTATTCATA
gi|7 : tAACTCGGATATT---GTTTTGATGAT-------GGCTGGTGAGAGGGCATCAATGATTAGGTTTCCGGACAATAACTTGAAAAGTTTACATCTGATCTAAGGATATGAGGTTTTATCGATATcaatctttcaca
gi|8 : agccgagttgcatcaaagttgTTC-CGG---ACGACTCTAAATCCAAAAATAGTTAC--------TTCTATAA-TATCAAAA-TTGATA-ACT-TT-AGGGAATTGGATT-CAAATCAAGATCGGCAGAAAGTCCCTTGTGATTT-CGGAAAAAATGCCAGCCAAGGTCA
gi|9 : TAAAGGCCTG-C-AGGAGGCCTTAAG-G----CTCA-CCT-TACAG-A-TGAT---------TGTAGT--GTT-GC-AAATTGAT--A-TT---------TTTTACT-C-G-TG-AT-ATT-CT-GTGA-TGACA-TTCTT-------T-GAAACCAATAGT-TGTTTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAGCCGAGTTGTAACGAAGTTGAGTTTGGCTGTTGTCTGATGATGGCTGGTGGTTGGGAGGGCA
Unaligned ( gi|20 ): TTAGCTGAGTTACATCGAAGTTGAATCGGGCTATTGTTTTGATG
Unaligned ( gi|23 ): TTAAATCTAAGGATGTGAGGTTTTATCGATATATCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1111111 1111 222222 1 222 1 2 111 1111 11 22222222 111111 2222 11 111 1 66666666666666666666666666666666666666666666666666666666666 22222 33333333333 555555555555555555 1 22 222 333333 3333333333 11 1 111 222 1 11 222222 2222 1 1 11 11 222 11 2222 1 22222222 33333333 2222 4444444444 11 1 222 222 1 111 1111 333333333333 11 11 222222222 11 1 2222222222222 11 3333 222222 6666666666666666666666 11 1 1 1 11 22 1 222 1 1 1 1 11 1 3333333 1
lowQualScore : 1 888 6666666 0 3 0000 2 1 777777 3 1 1 1 111 1 1 3 6 8 444 4444 11 44444444 222222 2222 6 6 6 6 11 55 1 1 1 444 22 0 3 0 88888888888888888888888888888888888888888888888888888888888 3 55555 3 0 1 77777777777 222222222222222222 77 3 11 7 7 00 111 1 1 2 22 11 000000 9999999999 1 88 2 5 777 1 22 000 5 1 1 88 444444 3333 1 5 1 1 5 88 88 1 1 000 1 88 1 1 4444 5 1 33333333 00000000 1 4444 0000000000 1 2 1 66 5 000 22 000 0 8 8 444 8 7777 3 8 8 8 0 444444444444 11 8 8 8 11 11 666666666 6 6 6 22 3 6 6 77 5555555555555 6 99 44 0 0000 0 777777 6666666666666666666666 11 3 0 3 3 88 6 00 2 0 333 3 3 1 5 5 77 1 5 22 1 1111111 1 5
lowQualScore : . ... ....... . . .... . . ...... . . . . ... . . . . . ... .... .. ........ ...... .... . . . . .. .. . . . ... .. . . . ........................................................... . ..... . . . ........... .................. .. . .. . . .. ... . . . .. .. ...... .......... . .. . . ... . .. ... . . . .. ...... .... . . . . . .. .. . . ... . .. . . .... . . ........ ........ . .... .......... . . . .. . ... .. ... . . . ... . .... . . . . . ............ .. . . . .. .. ......... . . . .. . . . .. ............. . .. .. . .... . ...... ...................... .. . . . . .. . .. . . ... . . . . . .. . . .. . ....... . .
lowQualScore : 0 555 2222222 2 4 6666 0 0 333333 3 0 0 0 555 0 0 3 7 0 000 8888 00 22222222 777777 7777 7 7 7 7 00 88 0 4 0 000 00 8 8 0 77777777777777777777777777777777777777777777777777777777777 2 00000 2 8 0 33333333333 333333333333333333 33 3 77 3 3 77 555 0 0 5 00 77 000000 5555555555 0 55 5 0 555 0 00 000 0 0 0 00 555555 5555 0 0 0 0 0 55 55 0 0 555 0 00 0 0 0000 0 0 55555555 55555555 0 5555 5555555555 0 5 0 00 5 555 00 555 0 0 0 000 0 0000 2 0 0 0 8 888888888888 00 0 0 0 00 66 777777777 7 7 7 33 3 7 7 77 5555555555555 7 22 22 8 7777 7 000000 0000000000000000000000 00 3 7 3 3 33 7 00 0 7 333 3 3 0 5 0 55 0 0 00 0 5555555 0 0
consensus : NAACTCGGCTATTT--GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGACT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----ATTATAA----------TTAAATGAT-ACG-CCCA-AGGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
Reference ( family-138 ) : NAACTCGGCTATTT--GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGACT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----ATTATAA----------TTAAATGAT-ACG-CCCA-AGGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
gi|1 : AACT-GAATATTTATGTTTTGATGAT-------GGCGGGCG----GGCGTCAACAATTAGGTTTCCGGACAATAACTCTAAATGTTAACATCTGATTTA---TT-TGAAACTTTA-CGATATTATTACGTATTAAGTGAGAAAAAACCCTAATGATTCTCAGAAAAATTCGGCCAAGGTCAA-AGTGTCCAAGAAAC-TCAGCAAAAGTCTGAAAACATGATATTTC-TGG---ACAA---TAACTCAAAACGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GCGATATTG--TTACATATCAAGTGAGAGAAAA---CCCTTTTGATTTTCGAAAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TACAATGA-T-----------------------G------------TTTCCGGACAATGACTCG-----AAAAGTGTACATCTGATTCAATTGAAACA--TTGGGATGTTGTTA--TTCATCAAAT-GAGTAAGAACCTTATTGATTTTCAGAAAAATCCGTTTAAGGCCCGCAACCCTCATGGCT-CACCTGTATGAACGATTTAATGTCACTA---ATAACTCTTAAATACTTAAAAACATTTTCTTAAGACATATGTAATAAAAGTTGTTTAGCGCTACTAGATCTAAGTAACCGTACCAAAATATAGGCCTGTGGGCCTCATGGCTCACCTGTACGGACAATTTAATATCATTAC------TCATAACTCTTTACTCGAAAACAATTTGTTAACAGATATATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCAAAAACA--TTGTTAAGACATATTGAACACTATTTG---TTTAGTT-TTACAAACTCCATCAAACCGTA-CCAAGATATACAGTGTAGGCCCACGGGCATCATGGCTCATCTGT-ACAGATGATTTAATA--CAGCTATTTATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATAAGCC---GTTGGCCTCATGGC--TCACTTGTATTGATGAATTAA----TCA-ATCTT---TA---CTCA-GA-----AACATTTTGATATG--ACATATTGA--------ACTAACATTGTGAAGTTTTAT---TAGATATATCTC---ATCGTATC-ATAAAGGCCTG-C-AAG---CCTAATA-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGC--ATT-GC-AA-TTAAT--AATG---------TTTTACT-C-G-TACAT-ATT-CT-TTTA-AGACA-T--AT-------T-GAA--CAAAAGA-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----AGTAT-G----------TTAAATAAT-ATG-CCCACGGGC--CTCATGGCTC-ATCTACAC---GGACAAAA-CACTTCGAAAATATTACCTGCAACTCGGCTGTAG--CATACCTGAAGCCTTTTGATTTT-------TGTTTGGAAAATTGATCT
gi|10 : a-ATAAAGGCCTG-C-AGG---CCTAATGCG----CTCACCCTGTACAG-ATTGAT---------T---GT--GTT-GC-AA-TTGAT--AA-T---------TTGTACTGC-G-TT-AT-ATT-CT-G-TA-TGACA----TT-------T-GAA--CTATAG--TGTTTAc
gi|11 : -ATAAAGGCCTAAC-AGG---CCTAATG-G----CT-A-CCTGTACAG-A-TA-----------T-CAGT--GTTTGC-AT-TTGATTAAATT---------TTTTACT-T-G-TTAAT-CTT-CT-GTTACAGACA-T--TT-------T-GAA--CAAACGT-Tt
gi|12 : TAAAAATATGAGGTTTCGCGGTACGCA----TAACTTCAAAAGT--TTACTTATATGTATCTG--A---TCAAACTCTGA-A-ACTGTT-G
gi|13 : aaatgact-----------------------G------------TTTCAGGACAATAACTCCAACAAAAAAAACCCCATCTGATTCA----------------ATGT---------------GT-GAATGAGAATCCTATTGGTTTTTGGAAAAAcgcggagaatactg
gi|14 : gag--------ATCTG--AAT-TCA-----TGA-AGACT-TTAGGGATATTG--TAA---ATCAAGAGAGAGAAAA---CCCTCATGAATTTTGAGAAAAAaatcatcc
gi|15 : AAAATCCGCCCAAGACCCACGGGCCTCATGGCTCCACCATTCTGA--GA-TCAATGTCACTAT-CATAATT
gi|17 : TT--GCTTTGATGAT-------GATGGGTG----GGCATCAACAATTAGGTTTCCAGACt
gi|18 : tagccaagttgcaaggagAACTTGGCTATT---GTTTTGATGATTATGGAGGGCGGGAG----GACGTC
gi|19 : gctgcaatgaagttgTT--GTTTTGATG-T-------GGTTGTGG----GGCGTCAACAATTAAATTTCCGGACGACAACT
gi|2 : AAAAACATC-GAAAAAGTTTAAAAACGTGAGGTGTA-CGG---GCAA---TAACTCCCAAAAT--TTAC--------ATCTG--A-T-TCAA---TGGA-A-ACT-TT-GGGATATTG--TTACATGTCAAGTGAGTGAGAA---CCCTATTGATTTTT-AGAAAAAT-TCTTCCAAGGTCAAGGACACAGTGACAAAAAACTGTTTTAAAA-GATT-----------------------GAAAAAAAAATGGTTTCCAGACA-TAACGCC-----AAT-GTTTACATCTAATTCAATTGAA--AGTTTGGGATATTGTTACAT--ATC-ATTTGAGTGAGAACCCTATTGGTTTATAGAAAAATCCGCCCAAGACTCA-AAGTCTCATGGCT-CACTTGTTCGGACAATTCAAGGTCACTATTCATAATTCTT---TACTCAAAAACTTTTTGTTAAAACATATATAACAAAAGTTGTTCAGTTTTACTAGATCTATCTAACCGTATCAAGATATAGGCTCGCAGGCCTTATGGCTCACCTGTATGGATGATTTAATGTCACTACATGTATTTATAACTCTTTACCTGAAAACAT---------ATATACATAACAAAAGTTGTT
gi|21 : ctACTCGGCTATT---GTTTTGATGAT-------GATAGGCA----AGCGaa
gi|22 : gccgagttgcAACTCAGCTGTT---GTTTTGATGAT-------GGCAGGCA----GG
gi|24 : gttgAACTCGGCTATT---GTTTTAATGAT-------GGCGGGAG----GGCATCaggg
gi|25 : AAAATATAGGTATGCGGACCTCATGGCTCACCTGTA
gi|3 : ATATACGCCCGTGTGGGCCTCGTGGCGATCACCTGTATGAACAAGTTTATTTGTCACGTCGTGGATAACTCTTATAACGAACAACATTTTGTTACGTTA-ATGTT-ATAGGTACGACAAGAGTTTT-TAG-TTTACTGGTAGGTATAGGTCGGAACCGTATCTAGAAGGGCCTG-CAAAG---CATAATG-GGCTTTTTA-ACTGTA-AGTA-CGACGTACGAGTGT-TAGTCGATT-GCAAA-TTGAT--AATTTTGCGTTAATTTTACT-CTG-TTAATAATTGCT-GTTA-TGACAGT--TT-------TGGAA--CAAAAGTGTGTTTGATTTCGGTGTAGGATCTGAA-TAATT-----ATGATAA----------TTAAATGATGACGTCCCA-AGGTCACTCATGGCTCTACCTGTGCTCAGGA-AAAA-TAA
gi|4 : gaATGAGGTTTCCGGACGATAACTTAAAAAGTTTACATCTGATTCA---AT-TGAAACTTTG-GGATATTGTTACATATTTAGTGATAGAGAACCCTATTGATTTTCGGAAAAATCTGGTCAAGGTC-ACAAAGACCAAAAAAC-TCTGAAAAAATCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------TTCTG--A-T-TCAA---ATGA-A-ACT-TT-GGAATATTA--TTAAATATCAAGTGAGTGAGAA---CCCTATTGATTTTCG-GAAAAAT-CCATCCAAGATCAAGGTCACAGTGA-------------TAGAATAACTTCGAAAAAATTTGAGAAAATGGGG------------TTTCCGGACAATAACTCC-----AAAAGTTTTCACCCGATTCAgatttgttaaga
gi|5 : ac---------TTGTACT-C-GATAAATTATT-TTTGTTA-CGATA-C--TTATGATATT-GAA--CAAAAAG-TGTT--ATTC----ATGAAATCT--AAT-ATTTAAAGATTATAAACTAATCACTTTAAA--AT-ATG-CCCT-ATGC--CTTTT--CT--ACTT-CAC---AGA-AAAAATAATACGAAAA-GCCACCT-CAACTCAGCTGTAGCCCATCCCC-ATTCCTATTGATTTTCAAACCCTAATT-GAAAACTGATTT
gi|6 : TTACTTGAAAACATTTTGTTACAA-ATA-ATAACTCTAAGTGCGCCTTAGTTCTTACTAATACTACTAA--CGTATTC---ATAT----TATAGGGCCAT-GGCCTCATGGCTCACCTTTCACAGACAATT--ATGTTCTGCTATTCATA
gi|7 : tAACTCGGATATT---GTTTTGATGAT-------GGCTGGTGAGAGGGCATCAATGATTAGGTTTCCGGACAATAACTTGAAAAGTTTACATCTGATCTAAGGATATGAGGTTTTATCGATATcaatctttcaca
gi|8 : agccgagttgcatcaaagttgTTC-CGG---ACGACTCTAAATCCAAAAATAGTTAC--------TTCTATAA-TATCAAAA-TTGATA-ACT-TT-AGGGAATTGGATT-CAAATCAAGATCGGCAGAAAGTCCCTTGTGATTT-CGGAAAAAATGCCAGCCAAGGTCA
gi|9 : TAAAGGCCTG-C-AGGAGGCCTTAAG-G----CTCA-CCT-TACAG-A-TGAT---------TGTAGT--GTT-GC-AAATTGAT--A-TT---------TTTTACT-C-G-TG-AT-ATT-CT-GTGA-TGACA-TTCTT-------T-GAAACCAATAGT-TGTTTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAGCCGAGTTGTAACGAAGTTGAGTTTGGCTGTTGTCTGATGATGGCTGGTGGTTGGGAGGGCA
Unaligned ( gi|20 ): TTAGCTGAGTTACATCGAAGTTGAATCGGGCTATTGTTTTGATG
Unaligned ( gi|23 ): TTAAATCTAAGGATGTGAGGTTTTATCGATATATCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1111111 1111 222222 1 222 1 2 111 1111 11 22222222 111111 2222 11 111 1 66666666666666666666666666666666666666666666666666666666666 22222 33333333333 555555555555555555 1 22 222 333333 3333333333 11 1 111 222 1 11 222222 2222 1 1 11 11 222 11 2222 1 22222222 33333333 2222 4444444444 11 1 222 222 1 111 1111 333333333333 11 11 222222222 11 1 2222222222222 11 3333 222222 6666666666666666666666 11 1 1 1 11 22 1 222 1 1 1 1 11 1 3333333 1
lowQualScore : 1 888 6666666 0 3 0000 2 1 777777 3 1 1 1 111 1 1 3 6 8 444 4444 11 44444444 222222 2222 6 6 6 6 11 55 1 1 1 444 22 0 3 0 88888888888888888888888888888888888888888888888888888888888 3 55555 3 0 1 77777777777 222222222222222222 77 3 11 7 7 00 111 1 1 2 22 11 000000 9999999999 1 88 2 5 777 1 22 000 5 1 1 88 444444 3333 1 5 1 1 5 88 88 1 1 000 1 88 1 1 4444 5 1 33333333 00000000 1 4444 0000000000 1 2 1 66 5 000 22 000 0 8 8 444 8 7777 3 8 8 8 0 444444444444 11 8 8 8 11 11 666666666 6 6 6 22 3 6 6 77 5555555555555 6 99 44 0 0000 0 777777 6666666666666666666666 11 3 0 3 3 88 6 00 2 0 333 3 3 1 5 5 77 1 5 22 1 1111111 1 5
lowQualScore : . ... ....... . . .... . . ...... . . . . ... . . . . . ... .... .. ........ ...... .... . . . . .. .. . . . ... .. . . . ........................................................... . ..... . . . ........... .................. .. . .. . . .. ... . . . .. .. ...... .......... . .. . . ... . .. ... . . . .. ...... .... . . . . . .. .. . . ... . .. . . .... . . ........ ........ . .... .......... . . . .. . ... .. ... . . . ... . .... . . . . . ............ .. . . . .. .. ......... . . . .. . . . .. ............. . .. .. . .... . ...... ...................... .. . . . . .. . .. . . ... . . . . . .. . . .. . ....... . .
lowQualScore : 0 555 2222222 2 4 6666 0 0 333333 3 0 0 0 555 0 0 3 7 0 000 8888 00 22222222 777777 7777 7 7 7 7 00 88 0 4 0 000 00 8 8 0 77777777777777777777777777777777777777777777777777777777777 2 00000 2 8 0 33333333333 333333333333333333 33 3 77 3 3 77 555 0 0 5 00 77 000000 5555555555 0 55 5 0 555 0 00 000 0 0 0 00 555555 5555 0 0 0 0 0 55 55 0 0 555 0 00 0 0 0000 0 0 55555555 55555555 0 5555 5555555555 0 5 0 00 5 555 00 555 0 0 0 000 0 0000 2 0 0 0 8 888888888888 00 0 0 0 00 66 777777777 7 7 7 33 3 7 7 77 5555555555555 7 22 22 8 7777 7 000000 0000000000000000000000 00 3 7 3 3 33 7 00 0 7 333 3 3 0 5 0 55 0 0 00 0 5555555 0 0
consensus : NAACTCGGCTATTT--GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGACT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----ATTATAA----------TTAAATGAT-ACG-CCCA-AGGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
Reference ( family-138 ) : NAACTCGGCTATTT--GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGACT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----ATTATAA----------TTAAATGAT-ACG-CCCA-AGGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
gi|1 : AACT-GAATATTTATGTTTTGATGAT-------GGCGGGCG----GGCGTCAACAATTAGGTTTCCGGACAATAACTCTAAATGTTAACATCTGATTTA---TT-TGAAACTTTA-CGATATTATTACGTATTAAGTGAGAAAAAACCCTAATGATTCTCAGAAAAATTCGGCCAAGGTCAA-AGTGTCCAAGAAAC-TCAGCAAAAGTCTGAAAACATGATATTTC-TGG---ACAA---TAACTCAAAACGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GCGATATTG--TTACATATCAAGTGAGAGAAAA---CCCTTTTGATTTTCGAAAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TACAATGA-T-----------------------G------------TTTCCGGACAATGACTCG-----AAAAGTGTACATCTGATTCAATTGAAACA--TTGGGATGTTGTTA--TTCATCAAAT-GAGTAAGAACCTTATTGATTTTCAGAAAAATCCGTTTAAGGCCCGCAACCCTCATGGCT-CACCTGTATGAACGATTTAATGTCACTA---ATAACTCTTAAATACTTAAAAACATTTTCTTAAGACATATGTAATAAAAGTTGTTTAGCGCTACTAGATCTAAGTAACCGTACCAAAATATAGGCCTGTGGGCCTCATGGCTCACCTGTACGGACAATTTAATATCATTAC------TCATAACTCTTTACTCGAAAACAATTTGTTAACAGATATATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCAAAAACA--TTGTTAAGACATATTGAACACTATTTG---TTTAGTT-TTACAAACTCCATCAAACCGTA-CCAAGATATACAGTGTAGGCCCACGGGCATCATGGCTCATCTGT-ACAGATGATTTAATA--CAGCTATTTATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATAAGCC---GTTGGCCTCATGGC--TCACTTGTATTGATGAATTAA----TCA-ATCTT---TA---CTCA-GA-----AACATTTTGATATG--ACATATTGA--------ACTAACATTGTGAAGTTTTAT---TAGATATATCTC---ATCGTATC-ATAAAGGCCTG-C-AAG---CCTAATA-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGC--ATT-GC-AA-TTAAT--AATG---------TTTTACT-C-G-TACAT-ATT-CT-TTTA-AGACA-T--AT-------T-GAA--CAAAAGA-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----AGTAT-G----------TTAAATAAT-ATG-CCCACGGGC--CTCATGGCTC-ATCTACAC---GGACAAAA-CACTTCGAAAATATTACCTGCAACTCGGCTGTAG--CATACCTGAAGCCTTTTGATTTT-------TGTTTGGAAAATTGATCT
gi|10 : a-ATAAAGGCCTG-C-AGG---CCTAATGCG----CTCACCCTGTACAG-ATTGAT---------T---GT--GTT-GC-AA-TTGAT--AA-T---------TTGTACTGC-G-TT-AT-ATT-CT-G-TA-TGACA----TT-------T-GAA--CTATAG--TGTTTAc
gi|11 : -ATAAAGGCCTAAC-AGG---CCTAATG-G----CT-A-CCTGTACAG-A-TA-----------T-CAGT--GTTTGC-AT-TTGATTAAATT---------TTTTACT-T-G-TTAAT-CTT-CT-GTTACAGACA-T--TT-------T-GAA--CAAACGT-Tt
gi|12 : TAAAAATATGAGGTTTCGCGGTACGCA----TAACTTCAAAAGT--TTACTTATATGTATCTG--A---TCAAACTCTGA-A-ACTGTT-G
gi|13 : aaatgact-----------------------G------------TTTCAGGACAATAACTCCAACAAAAAAAACCCCATCTGATTCA----------------ATGT---------------GT-GAATGAGAATCCTATTGGTTTTTGGAAAAAcgcggagaatactg
gi|14 : gag--------ATCTG--AAT-TCA-----TGA-AGACT-TTAGGGATATTG--TAA---ATCAAGAGAGAGAAAA---CCCTCATGAATTTTGAGAAAAAaatcatcc
gi|15 : AAAATCCGCCCAAGACCCACGGGCCTCATGGCTCCACCATTCTGA--GA-TCAATGTCACTAT-CATAATT
gi|17 : TT--GCTTTGATGAT-------GATGGGTG----GGCATCAACAATTAGGTTTCCAGACt
gi|18 : tagccaagttgcaaggagAACTTGGCTATT---GTTTTGATGATTATGGAGGGCGGGAG----GACGTC
gi|19 : gctgcaatgaagttgTT--GTTTTGATG-T-------GGTTGTGG----GGCGTCAACAATTAAATTTCCGGACGACAACT
gi|2 : AAAAACATC-GAAAAAGTTTAAAAACGTGAGGTGTA-CGG---GCAA---TAACTCCCAAAAT--TTAC--------ATCTG--A-T-TCAA---TGGA-A-ACT-TT-GGGATATTG--TTACATGTCAAGTGAGTGAGAA---CCCTATTGATTTTT-AGAAAAAT-TCTTCCAAGGTCAAGGACACAGTGACAAAAAACTGTTTTAAAA-GATT-----------------------GAAAAAAAAATGGTTTCCAGACA-TAACGCC-----AAT-GTTTACATCTAATTCAATTGAA--AGTTTGGGATATTGTTACAT--ATC-ATTTGAGTGAGAACCCTATTGGTTTATAGAAAAATCCGCCCAAGACTCA-AAGTCTCATGGCT-CACTTGTTCGGACAATTCAAGGTCACTATTCATAATTCTT---TACTCAAAAACTTTTTGTTAAAACATATATAACAAAAGTTGTTCAGTTTTACTAGATCTATCTAACCGTATCAAGATATAGGCTCGCAGGCCTTATGGCTCACCTGTATGGATGATTTAATGTCACTACATGTATTTATAACTCTTTACCTGAAAACAT---------ATATACATAACAAAAGTTGTT
gi|21 : ctACTCGGCTATT---GTTTTGATGAT-------GATAGGCA----AGCGaa
gi|22 : gccgagttgcAACTCAGCTGTT---GTTTTGATGAT-------GGCAGGCA----GG
gi|24 : gttgAACTCGGCTATT---GTTTTAATGAT-------GGCGGGAG----GGCATCaggg
gi|25 : AAAATATAGGTATGCGGACCTCATGGCTCACCTGTA
gi|3 : ATATACGCCCGTGTGGGCCTCGTGGCGATCACCTGTATGAACAAGTTTATTTGTCACGTCGTGGATAACTCTTATAACGAACAACATTTTGTTACGTTA-ATGTT-ATAGGTACGACAAGAGTTTT-TAG-TTTACTGGTAGGTATAGGTCGGAACCGTATCTAGAAGGGCCTG-CAAAG---CATAATG-GGCTTTTTA-ACTGTA-AGTA-CGACGTACGAGTGT-TAGTCGATT-GCAAA-TTGAT--AATTTTGCGTTAATTTTACT-CTG-TTAATAATTGCT-GTTA-TGACAGT--TT-------TGGAA--CAAAAGTGTGTTTGATTTCGGTGTAGGATCTGAA-TAATT-----ATGATAA----------TTAAATGATGACGTCCCA-AGGTCACTCATGGCTCTACCTGTGCTCAGGA-AAAA-TAA
gi|4 : gaATGAGGTTTCCGGACGATAACTTAAAAAGTTTACATCTGATTCA---AT-TGAAACTTTG-GGATATTGTTACATATTTAGTGATAGAGAACCCTATTGATTTTCGGAAAAATCTGGTCAAGGTC-ACAAAGACCAAAAAAC-TCTGAAAAAATCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------TTCTG--A-T-TCAA---ATGA-A-ACT-TT-GGAATATTA--TTAAATATCAAGTGAGTGAGAA---CCCTATTGATTTTCG-GAAAAAT-CCATCCAAGATCAAGGTCACAGTGA-------------TAGAATAACTTCGAAAAAATTTGAGAAAATGGGG------------TTTCCGGACAATAACTCC-----AAAAGTTTTCACCCGATTCAgatttgttaaga
gi|5 : ac---------TTGTACT-C-GATAAATTATT-TTTGTTA-CGATA-C--TTATGATATT-GAA--CAAAAAG-TGTT--ATTC----ATGAAATCT--AAT-ATTTAAAGATTATAAACTAATCACTTTAAA--AT-ATG-CCCT-ATGC--CTTTT--CT--ACTT-CAC---AGA-AAAAATAATACGAAAA-GCCACCT-CAACTCAGCTGTAGCCCATCCCC-ATTCCTATTGATTTTCAAACCCTAATT-GAAAACTGATTT
gi|6 : TTACTTGAAAACATTTTGTTACAA-ATA-ATAACTCTAAGTGCGCCTTAGTTCTTACTAATACTACTAA--CGTATTC---ATAT----TATAGGGCCAT-GGCCTCATGGCTCACCTTTCACAGACAATT--ATGTTCTGCTATTCATA
gi|7 : tAACTCGGATATT---GTTTTGATGAT-------GGCTGGTGAGAGGGCATCAATGATTAGGTTTCCGGACAATAACTTGAAAAGTTTACATCTGATCTAAGGATATGAGGTTTTATCGATATcaatctttcaca
gi|8 : agccgagttgcatcaaagttgTTC-CGG---ACGACTCTAAATCCAAAAATAGTTAC--------TTCTATAA-TATCAAAA-TTGATA-ACT-TT-AGGGAATTGGATT-CAAATCAAGATCGGCAGAAAGTCCCTTGTGATTT-CGGAAAAAATGCCAGCCAAGGTCA
gi|9 : TAAAGGCCTG-C-AGGAGGCCTTAAG-G----CTCA-CCT-TACAG-A-TGAT---------TGTAGT--GTT-GC-AAATTGAT--A-TT---------TTTTACT-C-G-TG-AT-ATT-CT-GTGA-TGACA-TTCTT-------T-GAAACCAATAGT-TGTTTA
blockSeqs : T T TATGGAG T AGAG A A AGGATA T T T T AC A A A T G TAC ACTC AG TTATATGT TAATA ACTC T G G A GA AC T A A AGT CA A G CAAAAAACTGTTTTAAAAGATTGAAAAAAAAATGG A AACAA A C ATTGAAAGT TGTTACATATCATTT AC C CT A T TT . T G T TC TC ATGTAT T T TT C . AT T AG CGC C T A . TTC . G . C T C . TT T C CGT G GA G T TTTG C G GGATAACT TAACGAAC T TTA ATAGGTACG A A T T . TGG GG GGA T A A AGG C GCTT C C T T GTACGAGTGTT CG T A A TA AT TTGCGTTAA G T A TA A G T CA CTTATGATAT G AC TG CGGT GAATA TAAAGATTATAAACTAATCACT TG G T . CA G CT G TCA . A A . . CC C . TT A CAAACCC A .
blockSeqs : C T . A . A G AT . . . . . A . . AAT AAT . . . . . AA T T T . AT A . TAGAATAACTTCGAAAAAATTTGAGAAAATGGGG A . A A . GT A . TC . . T AT . . . . . . T . . . TGT . . . . . AT . . . . TA T . . T TTCTT . . T . AAT ATGATAA . . . . . . . . . . .
blockSeqs : C . . G . G . . A . . AT T . . . . . A A T T . AT G . . . . T . . . . . . C . . . TC . . . . . A . . . . AA . . . T GTTT . . G
blockSeqs : C . . C . . . . . . AT A . . . . . C . A G . TG . . . . . . . . . . T . . . . . T . . . . T . . . C TTT . . T
blockSeqs : C . . C . . A . . . . . . . . . G . . . T TT . . .
blockSeqs : . . A .
blockSeqs : . . T .
blockSeqCons : *** TTCT*********
originalCons : NAACTCGGCTATTT--GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGACT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-T--TT-------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----ATTATAA----------TTAAATGAT-ACG-CCCA-AGGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
finalCons : NAACTCGGCTATT---GTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGACT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AA-TTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACATTCT---------T-GAA--CAAAAGT-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----ATTATAA----------TTAAATGAT-ACG-CCCA-AGGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAGCCGAGTTGTAACGAAGTTGAGTTTGGCTGTTGTCTGATGATGGCTGGTGGTTGGGAGGGCA
Unaligned ( gi|20 ): TTAGCTGAGTTACATCGAAGTTGAATCGGGCTATTGTTTTGATG
Unaligned ( gi|23 ): TTAAATCTAAGGATGTGAGGTTTTATCGATATATCGGT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 1111111 1111 222222 1 222 1 2 111 1111 11 22222222 111111 2222 11 111 1 66666666666666666666666666666666666666666666666666666666666 22222 33333333333 555555555555555555 1 22 222 333333 3333333333 11 1 111 222 1 11 222222 2222 1 1 11 11 222 11 2222 1 22222222 33333333 2222 4444444444 11 1 222 222 1 111 1111 333333333333 11 1 111 222222222 11 1 4444444444 11 3333 222222 6666666666666666666666 11 1 1 1 11 22 1 222 1 1 1 1 11 1 3333333 1
lowQualScore : 6666666 0 3 0000 2 1 777777 3 1 1 1 111 1 1 3 6 8 444 4444 11 44444444 222222 2222 6 6 6 6 11 55 1 1 1 444 22 0 3 0 88888888888888888888888888888888888888888888888888888888888 3 55555 3 0 1 77777777777 222222222222222222 77 3 11 7 7 00 111 1 1 2 22 11 000000 9999999999 1 88 2 5 777 1 22 000 5 1 1 88 444444 3333 1 5 1 1 5 88 88 1 1 000 1 88 1 1 4444 5 1 33333333 00000000 1 4444 0000000000 1 2 1 66 5 000 22 000 0 8 8 444 8 7777 3 8 8 8 0 444444444444 11 8 6 111 0 666666666 6 6 6 22 3 6 6 77 5555555555 99 44 0 0000 0 777777 6666666666666666666666 11 3 0 3 3 88 6 00 2 0 333 3 3 1 5 5 77 1 5 22 1 1111111 1 5
lowQualScore : ....... . . .... . . ...... . . . . ... . . . . . ... .... .. ........ ...... .... . . . . .. .. . . . ... .. . . . ........................................................... . ..... . . . ........... .................. .. . .. . . .. ... . . . .. .. ...... .......... . .. . . ... . .. ... . . . .. ...... .... . . . . . .. .. . . ... . .. . . .... . . ........ ........ . .... .......... . . . .. . ... .. ... . . . ... . .... . . . . . ............ .. . . ... . ......... . . . .. . . . .. .......... .. .. . .... . ...... ...................... .. . . . . .. . .. . . ... . . . . . .. . . .. . ....... . .
lowQualScore : 2222222 2 4 6666 0 0 333333 3 0 0 0 555 0 0 3 7 0 000 8888 00 22222222 777777 7777 7 7 7 7 00 88 0 4 0 000 00 8 8 0 88888888888888888888888888888888888888888888888888888888888 2 00000 2 8 0 33333333333 333333333333333333 33 3 77 3 3 77 555 0 0 5 00 77 000000 5555555555 0 55 5 0 555 0 00 000 0 0 0 00 555555 5555 0 0 0 0 0 55 55 0 0 555 0 00 0 0 0000 0 0 55555555 55555555 0 5555 5555555555 0 5 0 00 5 555 00 555 0 0 0 000 0 0000 2 0 0 0 8 888888888888 00 0 0 888 8 777777777 7 7 7 33 3 7 7 77 3333333333 22 22 8 7777 7 000000 0000000000000000000000 00 3 7 3 3 33 7 00 0 7 333 3 3 0 5 0 55 0 0 00 0 5555555 0 0
consensus : NAACTCGGCTATTGTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGACT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GCAAATTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-TT-------TTGAA--CAAAAGT-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----ATTATAA----------TTAAATGAT-ACG-CCCA-AGGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
Reference ( family-138 ) : NAACTCGGCTATTGTTTTGATGAT-------GGCGGGCG----GGCGTCAACGATTAGGTTTCCGGACGATAACTTNAAAAGTTTACATCTGATTTA---AT-TGAAACTTTA-CGATATTGTTACGTATTNAGTGANAGAGAACCCTANTGATTCTCGGAAAAATCCGGCCAAGGTCAACAGNGNCCAAAAAAC-TC-GAAAAAGTCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GGGATATTG--TTACATATCAAGTGAGNGAGAA---CCCTNTTGATTTTCGAGAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TANAATGACT-----------------------G------------TTTCCGGACAATAACTCC-----AAAAGTTTNCATCTGATTCAATTGAA--A--TTGGGATGTTGTTA--T--ATC-ANT-GAGTGAGAACCCTATTGGTTTTTAGAAAAATCCGCCCAAGACCCGCAAGCCTCATGGCT-CACCTGTNCGAACGATTCAATGTCACTAT-CATAATTCTTAAATACTCAAAAACNTTTTNTTAAGACATATGTAACAAAAGTTGTTCAGCGCTACTAGATCTANNTAACCGTACCAAAATATAGGCNCGCGGGCCTCATGGCTCACCTGTACGGACGATTTAATGTCACTACATGTATTCATAACTCTTTACCCGAAAACANTTTGTTAACANATACATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCGAAAACATTTTGTTACGACATATNNAACNCTANNTGCGCCTTAGTTCTTACNAACNCCACCAAACCGTATCCAAGATATACAGTGTAGGNCCACGGGCNTCATGGCTCACCTNTCACAGACGATTTAATGTTCNGCTATTCATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATANGCCCGTGTNGGCCTCGTGGCGATCACCTGTATNGACGAGTTNATTTGTCACGTCNTGGATAACTCTCATGACGAACAACATTTTGNTACGTTACATGTTGATAGGTACGACNAGCGTTNTGNAGTTTTACTGGTAGGTATANNTCGGAACCGTATC-ATAAAGGCCTG-C-AGG---CCTAATG-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGT--GTT-GC-AATTGAT--AATT---------TTTTACT-C-G-TNAAT-ATT-CT-GTTA-NGACA-TTC------TTGAA--CAAAAGT-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----ATTATAA----------TTAAATGAT-ACG-CCCA-AGGC--CTCATGGCTC-ACCTGCGC---GGA-AAAA-TAATNCGAAAATGCCACCTGCAACTCGGCTGTAGCCCATNCCCGANNCCTNTTGATTTTCAAACCCTGNTTGGAAAACTGATCT
gi|1 : TGTTTTGATGAT-------GGCGGGCG----GGCGTCAACAATTAGGTTTCCGGACAATAACTCTAAATGTTAACATCTGATTTA---TT-TGAAACTTTA-CGATATTATTACGTATTAAGTGAGAAAAAACCCTAATGATTCTCAGAAAAATTCGGCCAAGGTCAA-AGTGTCCAAGAAAC-TCAGCAAAAGTCTGAAAACATGATATTTC-TGG---ACAA---TAACTCAAAACGT--TTAC--------ATCTG--A-T-TCAA---TTGA-A-ACT-TT-GCGATATTG--TTACATATCAAGTGAGAGAAAA---CCCTTTTGATTTTCGAAAAAAAT-CCATCCAAGGTCAAGGTCACAGTGA-------------TACAATGA-T-----------------------G------------TTTCCGGACAATGACTCG-----AAAAGTGTACATCTGATTCAATTGAAACA--TTGGGATGTTGTTA--TTCATCAAAT-GAGTAAGAACCTTATTGATTTTCAGAAAAATCCGTTTAAGGCCCGCAACCCTCATGGCT-CACCTGTATGAACGATTTAATGTCACTA---ATAACTCTTAAATACTTAAAAACATTTTCTTAAGACATATGTAATAAAAGTTGTTTAGCGCTACTAGATCTAAGTAACCGTACCAAAATATAGGCCTGTGGGCCTCATGGCTCACCTGTACGGACAATTTAATATCATTAC------TCATAACTCTTTACTCGAAAACAATTTGTTAACAGATATATAACAAAAGTTGTTTAGTTTTACTAGATCTATCTAACCACATCACGATATAAGCTAGTGGGATGCTATAAGGTCACTATTCATAATTCCTTACTCAAAAACA--TTGTTAAGACATATTGAACACTATTTG---TTTAGTT-TTACAAACTCCATCAAACCGTA-CCAAGATATACAGTGTAGGCCCACGGGCATCATGGCTCATCTGT-ACAGATGATTTAATA--CAGCTATTTATAACTTTGTTCAATCATATTTAACAAAAATTGTTTAGTTCTACTAGATAACCGTATCAAGATATAAGCC---GTTGGCCTCATGGC--TCACTTGTATTGATGAATTAA----TCA-ATCTT---TA---CTCA-GA-----AACATTTTGATATG--ACATATTGA--------ACTAACATTGTGAAGTTTTAT---TAGATATATCTC---ATCGTATC-ATAAAGGCCTG-C-AAG---CCTAATA-G----CTCA-CCTGTACAG-A-TGAT---------T-TAGC--ATT-GC-AATTAAT--AATG---------TTTTACT-C-G-TACAT-ATT-CT-TTTA-AGACA--TA------TTGAA--CAAAAGA-TGTTTAATTT---TGCGAGATCT--A-T-ATT-----AGTAT-G----------TTAAATAAT-ATG-CCCACGGGC--CTCATGGCTC-ATCTACAC---GGACAAAA-CACTTCGAAAATATTACCTGCAACTCGGCTGTAG--CATACCTGAAGCCTTTTGATTTT-------TGTTTGGAAAATTGATCT
gi|10 : aaactgaatattta-ATAAAGGCCTG-C-AGG---CCTAATGCG----CTCACCCTGTACAG-ATTGAT---------T---GT--GTT-GC-AATTGAT--AA-T---------TTGTACTGC-G-TT-AT-ATT-CT-G-TA-TGACA-T--------TTGAA--CTATAG--TGTTTAc
gi|11 : -ATAAAGGCCTAAC-AGG---CCTAATG-G----CT-A-CCTGTACAG-A-TA-----------T-CAGT--GTTTGC-ATTTGATTAAATT---------TTTTACT-T-G-TTAAT-CTT-CT-GTTACAGACA-TT-------TTGAA--CAAACGT-Tt
gi|12 : TAAAAATATGAGGTTTCGCGGTACGCA----TAACTTCAAAAGT--TTACTTATATGTATCTG--A---TCAAACTCTGA-A-ACTGTT-G
gi|13 : aaatgact-----------------------G------------TTTCAGGACAATAACTCCAACAAAAAAAACCCCATCTGATTCA----------------ATGT---------------GT-GAATGAGAATCCTATTGGTTTTTGGAAAAAcgcggagaatactg
gi|14 : gag--------ATCTG--AAT-TCA-----TGA-AGACT-TTAGGGATATTG--TAA---ATCAAGAGAGAGAAAA---CCCTCATGAATTTTGAGAAAAAaatcatcc
gi|15 : AAAATCCGCCCAAGACCCACGGGCCTCATGGCTCCACCATTCTGA--GA-TCAATGTCACTAT-CATAATT
gi|17 : TTGCTTTGATGAT-------GATGGGTG----GGCATCAACAATTAGGTTTCCAGACt
gi|18 : tagccaagttgcaaggagAACTTGGCTATTGTTTTGATGATTATGGAGGGCGGGAG----GACGTC
gi|19 : gctgcaatgaagttgTTGTTTTGATG-T-------GGTTGTGG----GGCGTCAACAATTAAATTTCCGGACGACAACT
gi|2 : AAAAACATC-GAAAAAGTTTAAAAACGTGAGGTGTA-CGG---GCAA---TAACTCCCAAAAT--TTAC--------ATCTG--A-T-TCAA---TGGA-A-ACT-TT-GGGATATTG--TTACATGTCAAGTGAGTGAGAA---CCCTATTGATTTTT-AGAAAAAT-TCTTCCAAGGTCAAGGACACAGTGACAAAAAACTGTTTTAAAA-GATT-----------------------GAAAAAAAAATGGTTTCCAGACA-TAACGCC-----AAT-GTTTACATCTAATTCAATTGAA--AGTTTGGGATATTGTTACAT--ATC-ATTTGAGTGAGAACCCTATTGGTTTATAGAAAAATCCGCCCAAGACTCA-AAGTCTCATGGCT-CACTTGTTCGGACAATTCAAGGTCACTATTCATAATTCTT---TACTCAAAAACTTTTTGTTAAAACATATATAACAAAAGTTGTTCAGTTTTACTAGATCTATCTAACCGTATCAAGATATAGGCTCGCAGGCCTTATGGCTCACCTGTATGGATGATTTAATGTCACTACATGTATTTATAACTCTTTACCTGAAAACAT---------ATATACATAACAAAAGTTGTT
gi|21 : ctACTCGGCTATTGTTTTGATGAT-------GATAGGCA----AGCGaa
gi|22 : gccgagttgcAACTCAGCTGTTGTTTTGATGAT-------GGCAGGCA----GG
gi|24 : gttgAACTCGGCTATTGTTTTAATGAT-------GGCGGGAG----GGCATCaggg
gi|25 : AAAATATAGGTATGCGGACCTCATGGCTCACCTGTA
gi|3 : ATATACGCCCGTGTGGGCCTCGTGGCGATCACCTGTATGAACAAGTTTATTTGTCACGTCGTGGATAACTCTTATAACGAACAACATTTTGTTACGTTA-ATGTT-ATAGGTACGACAAGAGTTTT-TAG-TTTACTGGTAGGTATAGGTCGGAACCGTATCTAGAAGGGCCTG-CAAAG---CATAATG-GGCTTTTTA-ACTGTA-AGTA-CGACGTACGAGTGT-TAGTCGATT-GCAAATTGAT--AATTTTGCGTTAATTTTACT-CTG-TTAATAATTGCT-GTTA-TGACAGTTT------TGGAA--CAAAAGTGTGTTTGATTTCGGTGTAGGATCTGAA-TAATT-----ATGATAA----------TTAAATGATGACGTCCCA-AGGTCACTCATGGCTCTACCTGTGCTCAGGA-AAAA-TAA
gi|4 : gaATGAGGTTTCCGGACGATAACTTAAAAAGTTTACATCTGATTCA---AT-TGAAACTTTG-GGATATTGTTACATATTTAGTGATAGAGAACCCTATTGATTTTCGGAAAAATCTGGTCAAGGTC-ACAAAGACCAAAAAAC-TCTGAAAAAATCTAAAAACATGAGGTTTC-CGG---GCAA---TAACTCCAAAAGT--TTAC--------TTCTG--A-T-TCAA---ATGA-A-ACT-TT-GGAATATTA--TTAAATATCAAGTGAGTGAGAA---CCCTATTGATTTTCG-GAAAAAT-CCATCCAAGATCAAGGTCACAGTGA-------------TAGAATAACTTCGAAAAAATTTGAGAAAATGGGG------------TTTCCGGACAATAACTCC-----AAAAGTTTTCACCCGATTCAgatttgttaaga
gi|5 : ac---------TTGTACT-C-GATAAATTATT-TTTGTTA-CGATA-CTTATGATATTGAA--CAAAAAG-TGTT--ATTC----ATGAAATCT--AAT-ATTTAAAGATTATAAACTAATCACTTTAAA--AT-ATG-CCCT-ATGC--CTTTT--CT--ACTT-CAC---AGA-AAAAATAATACGAAAA-GCCACCT-CAACTCAGCTGTAGCCCATCCCC-ATTCCTATTGATTTTCAAACCCTAATT-GAAAACTGATTT
gi|6 : TTACTTGAAAACATTTTGTTACAA-ATA-ATAACTCTAAGTGCGCCTTAGTTCTTACTAATACTACTAA--CGTATTC---ATAT----TATAGGGCCAT-GGCCTCATGGCTCACCTTTCACAGACAATT--ATGTTCTGCTATTCATA
gi|7 : tAACTCGGATATTGTTTTGATGAT-------GGCTGGTGAGAGGGCATCAATGATTAGGTTTCCGGACAATAACTTGAAAAGTTTACATCTGATCTAAGGATATGAGGTTTTATCGATATcaatctttcaca
gi|8 : agccgagttgcatcaaagttgTTC-CGG---ACGACTCTAAATCCAAAAATAGTTAC--------TTCTATAA-TATCAAAA-TTGATA-ACT-TT-AGGGAATTGGATT-CAAATCAAGATCGGCAGAAAGTCCCTTGTGATTT-CGGAAAAAATGCCAGCCAAGGTCA
gi|9 : TAAAGGCCTG-C-AGGAGGCCTTAAG-G----CTCA-CCT-TACAG-A-TGAT---------TGTAGT--GTT-GCAAATTGAT---ATT---------TTTTACT-C-G-TG-AT-ATT-CT-GTGA-TGACA-TTCT-----TTGAAACCAATAGT-TGTTTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAGCCGAGTTGTAACGAAGTTGAGTTTGGCTGTTGTCTGATGATGGCTGGTGGTTGGGAGGGCA
Unaligned ( gi|20 ): TTAGCTGAGTTACATCGAAGTTGAATCGGGCTATTGTTTTGATG
Unaligned ( gi|23 ): TTAAATCTAAGGATGTGAGGTTTTATCGATATATCGGT