lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22 1 1 11 11 55555555555555555555555555555555555555555555555555555 111 11 2222222222222222222222222222222 22222 1111111111111111111111111111111111111111111111111111111111111111111111 11111 11 111 111 1 11111111 4 1
lowQualScore : 33 6 6 7 6 5 4 1 55 8 3 0 99 3 5 888 99 66 4 11 66 33333333333333333333333333333333333333333333333333333 0 33 999 0 1 55 77 0 2 9 4 8 5555555555555555555555555555555 4 55 55 00000 4 99 6666666666666666666666666666666666666666666666666666666666666666666666 44 66666 22 333 888 0 6 0 3 88888888 0 6 0 5
lowQualScore : .. . . . . . . . .. . . . .. . . ... .. .. . .. .. ..................................................... . .. ... . . .. .. . . . . . ............................... . .. .. ..... . .. ...................................................................... .. ..... .. ... ... . . . . ........ . . . .
lowQualScore : 00 0 0 0 0 0 0 2 88 2 0 7 22 0 0 222 00 11 7 44 11 44444444444444444444444444444444444444444444444444444 4 00 222 1 4 22 22 7 3 5 0 1 5555555555555555555555555555555 0 55 55 66666 0 55 7777777777777777777777777777777777777777777777777777777777777777777777 55 77777 00 777 555 3 7 0 2 00000000 7 0 0 0
consensus : GTTCCTTGATGACAATTGTTGATCTGTAACCAAGTTCTGCCTTTNACTCCGAGATNACGTAGTTT--AAACATNAG-A--CCATN-TCTCCAAA--CAGTGTCGAAG-GC--TTTGNTGC-TGTCCAG--AAAGNC-----GACATA---A--ACAT-TGCT-NCCN-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAATG-ANGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGGAAA-CCTTG--TTG--TTG-GTGAT-TTGG--AAATTGNNTTGAT--TC-T-----AGA----AT-NGAG--------TTTGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC-GA-ANATTTTN--AAAAA-ACATGGNAGTAAGGGATATCGGTCTGTAGCTATT
Reference ( gi|8 ) : GTTCCTAAATGGCAGTTGTTGATCAGTGACAAAGTTTTGCCTTTTATTCCAATATCATATAGCTT--AAACATCAA-A--CCATT-TCTCCAAA--CAGTATCAAAA-GC--TTTACTAC-TATCTAA--AAAACT-----GACGTA---A--ACAT-TATT-TCCC-TGTTCTATATTGTGCA-AAATTGT-CTCTTG-AAGATTGAATG-ATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG--AAATTGTTTTGAT--TC-T-----AAA----AT-TGAG--------TTTGTAATTC-GAG-AG---AGAAC-TAATTT-----TTT-AA-AGATTTTG--AAAAA-ACAGGGCAA-AAGAGACACTGGCCT-TAGATATT
gi|3 : GTTCCTTGATGACAATTGTTGATCTGTAACCAAGTTTTGCCTTTTATTTCAAGATCATACAGCTTTGAAAAATCAA-A--CCATT-TCTTCAAA--CAGTA-CATAA-GC--TTTACTAC-TATCCAA--AAAACT-----GACATA---A--ACAT-TGTT-TCCA-CATTCTATGTTGTGTA-AAAATGT-CTCTTG-AAAATTGAATG-ATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTA--TTG--TTG-ATAAT-TTGGAAAAATGG--TTGAT--TC-T-----AAA----AT-TGAG--------TTTGTAATTC-GAG-AG---AGATT-TAA-TT-----TTC-AA-AGATTTTGAAAAAAA-ACAGGGCAA-ATGGGATATCGG
gi|16 : caagatacaaaaacgtagacaggacaccgccctgccttacaccttgatctacagagaaccatctagattgagcttggtttacaatgatagagctaaatatgtgtaaatTTCTACCCTTGATCCCA---TTATGTAGTTT--AACCATCAA-A---CATTCTCTCCATA--CAGAGTCAAAG-GC--TTTGGTTC-CGTGTAA--AAtgtataactacatgtattgcaaagagttttcagttggtcaccacctttgtacagtgggactattagaattcgtttcca
gi|9 : CCTGTCACACCGAGATGACGCAATTT--TAGCATGAG-A--CCGTA-TGTCCAGA--CAGTATTGAAA-GC--CTC-TTGCGTATC-AA--GAAAGC-----AACGTACGGA--GGAC-TATG-TACCATGTTCTATGTTGTGGA-AGATACT-TTCTCG-AAAATTGAATG-AGGCTG---TGGTGGATCAA---AGTTTTGT--T---TCGAAG-CCTTG--CTG--TTG-TGGGT-TTGG--AAAT
gi|5 : tagataaagaaaggtagaaattaaaggaccccgccttgcctttctccttgggaaacaaggaatttgtctggtcaacgacagctgaacagagagtgtctgtgtggcaatcatcaataagatccacaaatatACTCCAAGACGTTGTAGTTT--ATACATGAG-A--CCATG-TCTCCAAA--CAGTGCCGAAC-GC--CTT-TTGTGTGTTCAG--GAAGGC-----AATATA---G--ACGG-AACT-ACCG-TGTTCTAAGTTATGGA-ATATTGT-TTCTTG-AAGATTGAAGG-AGGCTGTGAT--TGAACCAAGTGAGG-GC--------TGCAAG-CCTTG--TTA--CTG-GGGAT-TTGG--AAACTGAATGGAT--AT-T-----AGAAT--AT-TAAGACGAATCCTTTG-AAT--------------AAG-TATTTT-----CTC-GA-ATAATTTC--ATAAA-ACATGGTAATAAG
gi|7 : taagtaaagaaaggtggaaagaagtccaccttgccttacaccttgagaaacgggaaaccaacggtagttgctctggtttacagcaaccgaacagaacgtgtcggagtgacaatcgtcgattagggtccagagggatccagtaCCGAGATAACGTAATTT--AAACATGAG-A--GCATG-TCTCCAGAGACAGTATTGAAG-GCCTTTTGCT---TATCCAG--AAAAGCAAGTAGACGGG---ACTACATGTACTGTGGA-TGTTCTAAGTTGTGGG-AGATAGT-TTCTTG-AAGACCGAATG-AGGCTA------TAAT-GGATCCGAGT-CTTCGT---TGAAAG-CCTTGATTTG--TGG-GC--T-TT-G--AAATTGgtaatcggacggtaactgtcaggagacttctttggtttgttattccctttaaatataaatgggcactatgatatctttct
gi|4 : tcacaacaactgaacagaaagtacccgtgtgacaaccataaggatcctgccacaAGCTT--ATGCATTGAGA--CCATG-TCTCCACA--CCGTGTCGAATTGC--TTT-CTGCGTATCCAGGGAAAGCC------ACATG---AG-ACAG--ACT-ACCG-AGTCGTATATTGTG---AAATAGT-TTCTTG-CAGGTTAAACGGATGCCG---T--GATA-CAGCCCAGGTTCTT--T---TGGAGATCCCTG--CTG--TTGCGTG-T-TTGG--AAATTCTAT--AT--TG-G-----AAAGGACGT-GGAG--------TTT---ATTCTGCGTAA---TCAAC--AGTTT-----CTCGGA-ATATTTTT--AAAAAGGCATGGAAG-TAGGGCTATTGGTCTGTAGgatggatggtagtaacctttgcatctatattttctcaaataattacattagacaaggaagcattttacgttggtcgatagctgtcagg
gi|10 : taaataaaaggaatgttgaagtattcctccctttgacggactccttgccgaaacaggaaaccaatcggacttggtcgggtttacgacgacggaacagaagtatgcagtatgcagtcatcgataagagaccataggcgtccagagactccaagcagttgATCAA-AAGTCATT--CTC-AAA--CTGTGTCCAAA-GC--TTTA--AA-TGTC-----AAAGCT-----AACAT----A--ACAT-TGTT-GCCT-TGT--AATGTTATGC--AAATTGTATTCTTGTTATATT--ATG-A-GCGG---T--T-AG-C-ATCTAGTTGTTTA-T---TGGAAA-ATCTG--GTG--TTG-TTGAC-AGGG--AAAGCGTC---AT--TC--------------------------------GTAAT-------AA---AAAACTTAGTTTTCTTGTTT-AATACATTTTC--AAAAA-Actgtcagtgatttttctccggtttgttgtttcctttgtgtattggatcaataatgtctctgt
gi|6 : tAG-A--CCGTG-CCTCCAAA--AAGTATCGAAG-GC--TTTGGAGC-TCTCGAG--AAGGCT-----TAC-T----A--CCAT-T-----------TTCTAAATAATACT-ATATTGT-TTCCTGTAAGTTTTAA-G-ATGCCG---T--TGAA-CAGCCT---TATTT--TTCCTGAAAC-CCCTG--TTG--TTGCGTG-T-TTGG--AAA--AGAATGATCATC-T-----AGA----AT-ATAT--------TTCTTAATTC-TAT-TATTCAAAAC--AATTC-----TTA-AACAAATC-----AGAAA-GCATGACAGTAAGGCA-ACTGGTCTGTAGCTATT
gi|11 : tactaggtataaaaatgaagataatgcatcaccttgttgaacagaaaaccatcttgattgtgtttggtaaacaacaatagcacttgaagttttgttatgacaaactttgataatagaccacagtttaccacttacacctaaatgataccatttgcatagaT-TCTCCAAA--CTGTGTCCAA--GT--TTCAAAAT-T--C-----AAAAGT-----AACATA---A--ACAT-TGTT-GCCT-TGTTA-ATGTTATGCATCAATTGT-TTCTTGTTATATTGA------GCGG---T--TAGG-C-ATCTAGTTGTTT--T---GGAAAA-TCATG--GTG--TTG-TTGATAGTGG--AAA--GCTGTCAT--TCGTAATAAAAA----AT-TAAG--------TTTggtagacgttttatgtttatctcctcctttgtaaagtggaatgataagtccttgtttcca
gi|15 : tcaaaagtcTGTGGC-AAGTAGT-CTCTTG-TAGGTTAAAGG-AAGCT---------------------TGTTTG-T---TGGAAA-CCTTG--TTGATTT------T-TTGGA-AAATTA-TTTAAA--GG-T-----AGG----ATGCGAG--------TTCG-AATTC-GAG-TA---AGTAA-AAGCTT-----TTC-AA-ATATTTTA--AGTAG-ACATGGAAG-ACGAG
gi|14 : ACTGT-CTCTTGTAATATAAAA-G-ATGCTG---T--TATA-CAACTTAAACTCTT--T---TGATAA-CCTTG--TTG--CTG-GACAT-TTGG--GAAATGctatgg
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): AAAAAAAAAAATGAATTGTTCAAAGTGAACAACTCAGCACATCTTTTCTGAGAAATGTACATGTATTCCATAAAGAAATCAAACTTTAAAAGCCATTTTCCCTTTATAAAAAGCTTTCTAGATTTCACTTCAGCAATAACGGGAAGAACATAAAAGGCTGATCCACACAAAGATCAGATCTACACAATCCTGATGTTAAATGTACAATTACATTCAAAAGCGTTGAAACGTGGCGCGCGGTTTGTGACCTTGTGAGGACATGCCGTTCCGGGTCTCGCACACGTACAACAATGACGTAACACAATTCACCTTAAAGATGAGATACGTTGATTGAGTTCAGGTGTTAGGAGTCTAAATCACATAGCGCAAAAACAATTTACGATAAAACTAATAGATGGTACAACTGTACAAACTTAGAATTCATGACAAGGAGATTATCCCAAATACTAGTATACATTACTTCCCTGTTCAACATGTTCCTCATTACACGGAATGGTAGCAAACATGATTGTGGACGCGTTATAGATTTCAGCCAACAGGAATAAATAACAGTATGTTGCGTCTAGTACGCTTTAGAGAGCCGCAAGGGACAATATAAAACACAATGAATTATTGGAATCTGTTAGGAAAAGGCACATGCTATGAATATTCAAGATATTATGAAGGTAAACGTCATAAACAGGATCATTCAAGTGAACTGTATATAAAATTGTGGATAAAACTCCACCTTGCAGAA
Unaligned ( gi|2 ): AAAAACAAAAGATAGAATGGTCAAAAATACACTTTTCGGTAAACTACATGTACATGTATTAGGAACCCAGATCGACAAAGTCGTCCGCTAAAAAATTGTAGATTCCTGCTGTTCATTTTTGCAATGATAAGAAGAACATTAAAAAATAATGATCTACACAATCTTGGTATGAGTTAAATATATTCATATTGTATGGTGTCAACAGTCAAGCTGTGAAGACAACCTATCGATAGAGAACTGATGGTAAAATAATTCGCTAATAAAGGTGGGATACAATGACTGGATGTTGGGAACCTAAATCACATAGCGCAAAGAAATATTTCCCTCATCTTGTCAACAGCTTGCATTTGGTTATGAAAATGATTGTAGATTTCATTATAGGGAAGAATACCACACTGTATTTCTATTTCTATTTAGTTTGTTCCATTTGCACGAAATTTCAGTTCGCATGATATCGAGACATTAAGTGTATATTGAGTCCAATAAGGGATGGAGGGCCGCAAGAGGTGATGCAATACACGGTATGTCGTCTGCTAGAGAAGGGCAGCTTCTTCGTACATTCAAAGTACCTGTATTTAAACTATGAAGTTCGAGAAGATCATTCACGTGCACATATATACAAGATATAAAAATGTGGATAATACACCACCTTGCCGA
Unaligned ( gi|12 ): CCGCAAGGGATAGTTCCCACCTGATTGCCATCTGCTAGAAAAGAGCAACTGTTACGAATATTCAAGATGAAGTTCTGCATTTGAACTATGAAGGTTACAAACGTCATCAACAAGATCATTTACATGAACAATATATGTATACAAATGTGGATAACACTCCACCTTGCAGAA
Unaligned ( gi|13 ): GTTATGGGTTTGGAAATTTTATGGATGGATATGATGACGAGTCCATAGTTTTTATCAAATAATTTTATAAGACTAGGAAGTAGCGCGATTGGTCAGGAAGCTGTTAGTCAATCTTTTGAGCTTTTTACTTCCTTTGTACATGTCAATTGGCGCTATATAAGATCTTTT
Unaligned ( gi|17 ): AGAGAACACCCTCGACTGTGTAAGGTTAACTAC
Alignments
lowQualScore : 11 2222222 11 333333 22222222 1111111 11 11 1111111111111 11 11111 44444444444444444444444444444444444444444 111 22222222222222 11111 1111111 111 1
lowQualScore : 4 66 8 8888888 3 00 3 2 7 1 6 66 66 0 66 5 55 55 4 111111 2 2 888 88888888 4 1111111 8888888 1 4 1 1 888 0 3 44 1 11 5 2222222222222 0 2 2 22 666 1 3 55 55 55555 3 3 66666666666666666666666666666666666666666 4 111 0 5 11111111111111 2 22222 6666666 1 2 777 5 1 000 8 3 3
lowQualScore : . .. . ....... . .. . . . . . .. .. . .. . .. .. . ...... . . ... ........ . ....... ....... . . . . ... . . .. . .. . ............. . . . .. ... . . .. .. ..... . . ......................................... . ... . . .............. . ..... ....... . . ... . . ... . . .
lowQualScore : 0 55 0 8888888 7 77 0 6 4 0 2 99 99 5 00 3 55 44 0 222222 1 9 000 33333333 4 7777777 4444444 0 4 0 1 888 5 6 88 2 55 8 0000000000000 3 8 8 33 444 0 6 00 00 33333 6 6 22222222222222222222222222222222222222222 4 999 4 0 55555555555555 2 55555 6666666 0 2 999 0 0 111 0 6 2
consensus : GTTCCTNGATGACAATCGTTGATCAGTA-ACCA--AG---TTCTGCCTTTNACNCCGAGATNATGT--AGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGC-TTTNNTGC-TATCCA--GAAAGCC-----GACGT-A---A--ACAT-TG-C-TGC-CGTGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNNTTGAT--T-C-T-----AGAA------T-------CGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
Reference ( family-1374 ) : GTTCCTTGATGACAATTGTTGATCTGTA-ACCA--AG---TTCTGCCTTTNACTCCGAGATNACGT--AGTTT--AAACATN-AGACCATNTCTCC--AAACAGTGTCGAA-GGC-TTTGNTGC-TGTCCA--GAAAGNC-----GACAT-A---A--ACAT-TG-C-TNC-CNTGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GANGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGGAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAATTGNNTTGAT--T-C-T-----AGAA------T-------NGA-GTTTGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAAAAA-ACATGGNAGTAA-GGGATATCGGTCTGTAGCTATT
gi|10 : CAT-TCTC---AAACTGTGTCCAA-AGC-TTTAA--A-TGTC-----AAAGCT-----AACAT-A---A---CAT-TG-T-TGC-CTTGTA--ATGTTATGCA-AA-TTGTATTCTTGTTATATT--AT-GA-GCGGT---TAG--C-A-TCTAGTTGTTTA-T---TGGAAA-ATCTG--GTG--TTG-TTGAC-AGGG-AAA--GCGTC-AT--T-C---------------------------------GTAAT-------AA---AAAACTTAGTTTTCTTGTTT----AATACATTTT--CAAAAA-A
gi|11 : tatcaaaagtTCTCC--AAACTGTGTCCAA-G---TTTCAAA---ATTCA---AAAGT------AACAT-A---A--ACAT-TG-T-TGC-CTTGTTA-ATGTTATGCATCAATTGT-TTCTTGTTATATTGA------GCGGT---TAGG-C--ATCTAGTTGTTT--T---GGAAAA-TCATG--GTG--TTG-TTGATAGTGG-AAA--GCTGTCAT--T-CGTAATAAAAAA------T-------TAA-GTTT
gi|14 : tcaaaagtctACTGT-CTCTTGTAATATAAAA--GATGCTGT---TATA-C-AACTTAAACTCTT--T---TGATAA-CCTTG--TTG--CTG-GACAT-TTGG-GAAATGCAC--AT--TACAT-----AGGG------T-------AAATGATTGT-ATAC-GAT-AA---TAGAT-GATTTT-----TTCCCCTGA-AAACCTT--GAGAAA-
gi|15 : TGTGGC-AAGTAGT-CTCTTGTAGG-TTAAAG-GAAGCT--------------------TGTTTG-T---TGGAAA-CCTTG--TTGATTT------T-TTGG-AAAATTATTTAAA--G-G-T-----AGGA------TG------CGA-GTTCG-AATTC-GAG-TA---AGTAA-AAGCTT-----TTC----AA-ATATTTT--AAGTAG-ACATGGAAGtgtacagtgta
gi|16 : ---TTCTACCCTTGATCCC---ATTATGT--AGTTT--AACCATC-AAACATTCTCTCC--ATACAGAGTCAAA-GGC-TTTGGTTC-CGTacgagctatgg
gi|3 : GTTCCTTGATGACAATTGTTGATCTGTA-ACCA--AG---TTTTGCCTTTTATTTCAAGATCATAC--AGCTTTGAAAAATC-AAACCATTTCTTC--AAACAGTA-CATA-AGC-TTTACTAC-TATCCA--AAAAACT-----GACAT-A---A--ACAT-TG-T-TTC-CACATTCTATGTTGTGTA-AAAATGT-CTCTTG-AAAATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTA--TTG--TTG-ATAAT-TTGGAAAAATG-GTTGAT--T-C-T-----AAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGATT-TAA-TT-----TTC----AA-AGATTTTGAAAAAAA-ACAGGGCA--AATGGGATATCGGTGTATAACTAgtaaaa
gi|4 : caagatacaaaaacgtagacaggacaccgccctgccttacaccttgatctacagagaaccatctagattgagcttggtttacaatgatagagctaaatatgtgtaaatACTCCAAG--CA-GTTGAGCTT--ATGCATTGAGACCATGTCTCC--ACACCGTGTCGAATTGC-TTT-CTGCGTATCCAGGGAAAGCC------ACATGA---G--ACA---GAC-TAC-CGAGTCGTATATTGTG---AAATAGT-TTCTTGC-AGGTTAAACGGATGCCGT---GATA-C-AGCCCAGGTTCTT--T---TGGAGATCCCTG--CTG--TTGCGTG-T-TTGG-AAATTCTAT--AT------T-----GGAAAGGACGT-------GGA-GTTT---ATTCTGCGTAA---TCAAC--AGTTT-----CTCG---GA-ATATTTT--TAAAAAGGCATGGAAGT-A-GGGCTATTGGTCTGTAGCTGTcatgtattgcaaagagttttcagttggtcaccacctttgtacagtgggactattagaattcgtttcca
gi|5 : taaataaaaggaatgttgaagtattcctccctttgacggactccttgccgaaacaggaaaccaatcggacttggtcgggtttacgacgacggaacagaagtatgcagtatgcagtcatcgataagagaccataggcgtccagagTGACAATCGTCGATTAGGG-TCCAG-AGGGATCCAG----TAACTCCAAGACGTTGT--AGTTT--ATACATG-AGACCATGTCTCC--AAACAGTGCCGAA-CGCCTTTTGTG--TGTTCA--GGAAGGC-----AATAT-A---G--ACGG-AA-C-TAC-CGTGTTCTAAGTTATGGA-ATATTGT-TTCTTG-AAGATTGAAG-GAGGCTGTGATTGAA-CCAAGTGAGG-GCT--------GCAAG-CCTTG--TTA--CTG-GGGAT-TTGG-AAACTGAATGGAT--A-T-T-----AGAA------TATTAAGACGA-ATCC----TTT-GAA-TA---AG----TATTTT-----CTC----GA-ATAATTT--CATAAA-ACATGGTAATAA-GGTA-ATCGGACGGTAACTGTcagtgatttttctccggtttgttgtttcctttgtgtattggatcaataatgtctctgt
gi|6 : taagtaaagaaaggtggaaagaagtccaccttgccttacaccttgagaaacgggaaaccaacggtagttgctctggtttacagcaaccgaacagaacgtgtcggagATGACAAACTTTGATA-ATAGACCAC-AG---TT-TACCACTTACACCTAAATGATAC--CATTT--GCATAGA-AGACCGTGCCTCC--AAAAAGTATCGAA-GGC-TTTGGAGC-TCTCGA--GAAGGC----------------------T-TA-C-TAC-CATTTTCTAAATAATACT-ATATTGT-TTCCTGTAAGTTTTAA--GATGCCGT---TGAA-C-AGCCT---TATTT--TTCCTGAAAC-CCCTG--TTG--TTGCGTG-T-TTGG-AAA--AGAATGATCAT-C-T-----AGAA------T-------ATA-TTTCTTAATTC-TAT-TATTCAAAAC--AATTC-----TTA----AACAAA---T--CAGAAA-GCATGACAGTAA-GGCA-ACTGGTCTGTAGCTATTcaggagacttctttggtttgttattccctttaaatataaatgggcactatgatatctttct
gi|7 : tactaggtataaaaatgaagataatgcatcaccttgttgaacagaaaaccatcttgattgtgtttggtaaacaacaatagcacttgaagttttgttA-ACCATAAGGA-TCCTGCC----ACACCGAGATAACGT--AATTT--AAACATG-AGAGCATGTCTCCAGAGACAGTATTGAA-GGC-CTT-TTGCTTATCCA--GAAAAGCAAGTAGACGG-G---ACTACATGTA-C-TGTGGATGTTCTAAGTTGTGGG-AGATAGT-TTCTTG-AAGACCGAAT-GAGGCTA----TAAT-G-GATCCGAGT-CTTCGT---TGAAAG-CCTTGATTTG--TGG-GC--T-TT-G-AAATTGGATGGAT--ggtagacgttttatgtttatctcctcctttgtaaagtggaatgataagtccttgtttcca
gi|8 : tcacaacaactgaacagaaagtacccgtgtgacGTTCCTAAATGGCAGTTGTTGATCAGTG-ACAA--AG---TTTTGCCTTTTATTCCAATATCATAT--AGCTT--AAACATC-AAACCATTTCTCC--AAACAGTATCAAA-AGC-TTTACTAC-TATCTA--AAAAACT-----GACGT-A---A--ACAT-TA-T-TTC-CCTGTTCTATATTGTGCA-AAATTGT-CTCTTG-AAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAATTGTTTTGAT--T-C-T-----AAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGAAC-TAATTT-----TTT----AA-AGATTTT--GAAAAA-ACAGGGCAA-AA-GAGACACTGGCCT-TAGATATTggtagtaacctttgcatctatattttctcaaataattacattagacaaggaagcattttacgttggtcgatagctgtcagg
gi|9 : CCTGTCACACCGAGATGACGC--AATTT--TAGCATG-AGACCGTATGTCC--AGACAGTATTGAA-AGC-CTC-TTGCGTATCAA--GAAAG-C-----AACGT-ACGGA--GGAC-TA-TGTAC-CATGTTCTATGTTGTGGA-AGATACT-TTCTCG-AAAATTGAAT-GAGGCTGTGG-TGGATC-AA---AGTTTTGT--T---TCGAAG-CCTTG--CTG--TTG-TGGGT-TTGG-AAAT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAAAAAAAAATGAATTGTTCAAAGTGAACAACTCAGCACATCTTTTCTGAGAAATGTACATGTATTCCATAAAGAAATCAAACTTTAAAAGCCATTTTCCCTTTATAAAAAGCTTTCTAGATTTCACTTCAGCAATAACGGGAAGAACATAAAAGGCTGATCCACACAAAGATCAGATCTACACAATCCTGATGTTAAATGTACAATTACATTCAAAAGCGTTGAAACGTGGCGCGCGGTTTGTGACCTTGTGAGGACATGCCGTTCCGGGTCTCGCACACGTACAACAATGACGTAACACAATTCACCTTAAAGATGAGATACGTTGATTGAGTTCAGGTGTTAGGAGTCTAAATCACATAGCGCAAAAACAATTTACGATAAAACTAATAGATGGTACAACTGTACAAACTTAGAATTCATGACAAGGAGATTATCCCAAATACTAGTATACATTACTTCCCTGTTCAACATGTTCCTCATTACACGGAATGGTAGCAAACATGATTGTGGACGCGTTATAGATTTCAGCCAACAGGAATAAATAACAGTATGTTGCGTCTAGTACGCTTTAGAGAGCCGCAAGGGACAATATAAAACACAATGAATTATTGGAATCTGTTAGGAAAAGGCACATGCTATGAATATTCAAGATATTATGAAGGTAAACGTCATAAACAGGATCATTCAAGTGAACTGTATATAAAATTGTGGATAAAACTCCACCTTGCAGAA
Unaligned ( gi|2 ): AAAAACAAAAGATAGAATGGTCAAAAATACACTTTTCGGTAAACTACATGTACATGTATTAGGAACCCAGATCGACAAAGTCGTCCGCTAAAAAATTGTAGATTCCTGCTGTTCATTTTTGCAATGATAAGAAGAACATTAAAAAATAATGATCTACACAATCTTGGTATGAGTTAAATATATTCATATTGTATGGTGTCAACAGTCAAGCTGTGAAGACAACCTATCGATAGAGAACTGATGGTAAAATAATTCGCTAATAAAGGTGGGATACAATGACTGGATGTTGGGAACCTAAATCACATAGCGCAAAGAAATATTTCCCTCATCTTGTCAACAGCTTGCATTTGGTTATGAAAATGATTGTAGATTTCATTATAGGGAAGAATACCACACTGTATTTCTATTTCTATTTAGTTTGTTCCATTTGCACGAAATTTCAGTTCGCATGATATCGAGACATTAAGTGTATATTGAGTCCAATAAGGGATGGAGGGCCGCAAGAGGTGATGCAATACACGGTATGTCGTCTGCTAGAGAAGGGCAGCTTCTTCGTACATTCAAAGTACCTGTATTTAAACTATGAAGTTCGAGAAGATCATTCACGTGCACATATATACAAGATATAAAAATGTGGATAATACACCACCTTGCCGA
Unaligned ( gi|12 ): CCGCAAGGGATAGTTCCCACCTGATTGCCATCTGCTAGAAAAGAGCAACTGTTACGAATATTCAAGATGAAGTTCTGCATTTGAACTATGAAGGTTACAAACGTCATCAACAAGATCATTTACATGAACAATATATGTATACAAATGTGGATAACACTCCACCTTGCAGAA
Unaligned ( gi|13 ): GTTATGGGTTTGGAAATTTTATGGATGGATATGATGACGAGTCCATAGTTTTTATCAAATAATTTTATAAGACTAGGAAGTAGCGCGATTGGTCAGGAAGCTGTTAGTCAATCTTTTGAGCTTTTTACTTCCTTTGTACATGTCAATTGGCGCTATATAAGATCTTTT
Unaligned ( gi|17 ): AGAGAACACCCTCGACTGTGTAAGGTTAACTAC
Alignments
lowQualScore : 11111 3333333 11 2222222 111111111 111 1111111 111 11 11 11111111111 11 11111 555555555555555555555555555555555 111 22222222222222 11111 1111111 111 1
lowQualScore : 1 5 3 33333 0000000 5 1 00 3 1 7 1 66 0 66 5 55 55 4 5555555 2 111111111 666 1 4 1111111 8888888 2 88 333 0 3 44 1 11 6 22222222222 3 0 2 2 22 666 3 55 55 55555 3 3 1 000000000000000000000000000000000 5 111 0 5 11111111111111 2 22222 6666666 1 2 777 1 5 1 000 8 3 3
lowQualScore : . . . ..... ....... . . .. . . . . .. . .. . .. .. . ....... . ......... ... . . ....... ....... . .. ... . . .. . .. . ........... . . . . .. ... . .. .. ..... . . . ................................. . ... . . .............. . ..... ....... . . ... . . . ... . . .
lowQualScore : 0 0 2 77777 7777777 3 7 77 0 0 6 0 99 5 00 7 55 44 0 3333333 9 888888888 666 7 4 7777777 4444444 7 11 777 5 6 88 2 55 5 66666666666 5 3 8 8 33 444 6 00 00 33333 6 6 0 888888888888888888888888888888888 0 999 4 0 55555555555555 2 55555 6666666 0 2 999 1 0 0 111 0 6 2
consensus : GTTCCTNGATGACAATCGTTGATCAGTA-A---CCAC-AG---TTCTGCCTTTNACNCCGAGATNATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGC-TTTNN-TGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
Reference ( family-1374 ) : GTTCCTNGATGACAATCGTTGATCAGTA-A---CCA--AG---TTCTGCCTTTNACNCCGAGATNATGTAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGC-TTTNN-TGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNNTTGAT--T-C-TAGAA------T-------CGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
gi|10 : CAT-TCTC---AAACTGTGTCCAA-AGC-TTTAAATG----TC-----A-----AAGCTAACAT-A---A---CAT-TG-T-TGCCT-TGT--AATGTTATGC--AAATTGTATTCTTGTTATATT--AT-GA-GCGGT---T-AG-C--ATCTAGTTGTTTA-T---TGGAAA-ATCTG--GTG--TTG-TTGAC-AGGG-AAAGCG---------T-C------------------------ATTCGTAAT-------AA---AAAACTTAGTTTTCTTGTTT----AATACATTTT--CAAAAA-A
gi|11 : tatcaaaagtTCTCC--AAACTGTGTCCAA-G---TTTCA-AA---ATTCA---A-----AAGT-AACAT-A---A--ACAT-TG-T-TGCCT-TGTTA-ATGTTATGCATCAATTGT-TTCTTGTTATATTGA------GCGGT---TAGG-C--ATCTAGTTGTTT--T---GGAAAA-TCATG--GTG--TTG-TTGATAGTGG-AAA
gi|14 : tcaaaagtctACTGT-CTCTTGTAATATAAAA--GATGCTGT---TATA-C-AACTTAAACTCTT--T---TGATAA-CCTTG--TTG--CTG-GACAT-TTGG-GAAATGCAC--AT--TACATAGGG------T-------AAATGATTGT-ATAC-GAT-AA---TAGAT-GATTTT-----TTCCCCTGA-AAACCTT--GAGAAA-gctgtcattcgtaataaaaaattaagttt
gi|15 : TGTGGC-AAGTAGT-CTCTTGTAGG-TTAAAG-GAAGCT--------------------TGTTTG-T---TGGAAA-CCTTG--TTGATTT------T-TTGG-AAAATTATTTAAA--G-G-TAGGA------TG------CGA-GTTCG-AATTC-GAG-TA---AGTAA-AAGCTT-----TTC----AA-ATATTTT--AAGTAG-ACATGGAAGtgtacagtgta
gi|16 : ---TTCTACCCTTGATCCC---ATTATGTAGTTT--AACCATC-AAACATTCTCTCC--ATACAGAGTCAAA-GGC-TTTGG-Tacgagctatgg
gi|3 : GTTCCTTGATGACAATTGTTGATCTGTA-A---CCA--AG---TTTTGCCTTTTATTTCAAGATCATACAGCTTTGAAAAATC-AAACCATTTCTTC--AAACAGTA-CATA-AGC-TTTAC-TAC-TATCCA--AA-----AAACTGACAT-A---A--ACAT-TG-T-TTCCA-CATTCTATGTTGTGTA-AAAATGT-CTCTTG-AAAATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTA--TTG--TTG-ATAAT-TTGGAAAAATG-GTTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGATT-TAA-TT-----TTC----AA-AGATTTTGAAAAAAA-ACAGGGCA--AATGGGATATCGGTGTATAACTAtccgtgtaaaa
gi|4 : caagatacaaaaacgtagacaggacaccgccctgccttacaccttgatctacagagaaccatctagattgagcttggtttacaatgatagagctaaatatgtgtaaatAGCTT--ATGCATTGAGACCATGTCTCC--ACACCGTGTCGAATTGC-TTT-C-TGCGTATCCAGGGA-----AAGCC-ACATGA---G--ACA---GAC-TACCG-AGTCGTATATTGTG---AAATAGT-TTCTTGC-AGGTTAAACGGATGCCGT---GATA-C-AGCCCAGGTTCTT--T---TGGAGATCCCTG--CTG--TTGCGTG-T-TTGG-AAATTCTAT--AT------TGGAAAGGACGT-------GGA-GTTT---ATTCTGCGTAA---TCAAC--AGTTT-----CTCG---GA-ATATTTT--TAAAAAGGCATGGAAGT-A-GGGCTATTGGTCTGTAGCTGTcatgtattgcaaagagttttcagttggtcaccacctttgtacagtgggactattagaattcgtttcca
gi|5 : taaataaaaggaatgttgaagtattcctccctttgacggactccttgccgaaacaggaaaccaatcggacttggtcgggtttacgacgacggaacagaagtatgcagtatgcagtcatcgataagagaccataggcgtccagagactccaagcagttgTGACAATCGTCGATTAGGG-T---CCAG-AGGGATCCAG----TAACTCCAAGACGTTGTAGTTT--ATACATG-AGACCATGTCTCC--AAACAGTGCCGAA-CGCCTTTTG-TG--TGTTCA--GG-----AAGGCAATAT-A---G--ACGG-AA-C-TACCG-TGTTCTAAGTTATGGA-ATATTGT-TTCTTG-AAGATTGAAG-GAGGCTGTGATTGAA-CCAAGTGAGG-GCT--------GCAAG-CCTTG--TTA--CTG-GGGAT-TTGG-AAACTGAATGGAT--A-T-TAGAA------TATTAAGACGA-ATCC----TTT-GAA-TA---AG----TATTTT-----CTC----GA-ATAATTT--CATAAA-ACATGGTAATAA-GGTA-ATCGGACGGTAACTGTcagtgatttttctccggtttgttgtttcctttgtgtattggatcaataatgtctctgt
gi|6 : taagtaaagaaaggtggaaagaagtccaccttgccttacaccttgagaaacgggaaaccaacggtagttgctctggtttacagcaaccgaacagaacgtgtcggagATGACAAACTTTGAT-AATAGA---CCAC-AG---TT-TACCACTTACACCTAAATGATACCATTT--GCATAGA-AGACCGTGCCTCC--AAAAAGTATCGAA-GGC-TTTGG-AGC-TCTCGA--GA-----AGGC-----------------T-TA-C-TACCA-TTTTCTAAATAATACT-ATATTGT-TTCCTGTAAGTTTTAA--GATGCCGT---TGAA-C-AGCCT---TATTT--TTCCTGAAAC-CCCTG--TTG--TTGCGTG-T-TTGG-AAAA-GAA-TGATCAT-C-TAGAA------T-------ATA-TTTCTTAATTC-TAT-TATTCAAAAC--AATTC-----TTA----AACAAA---T--CAGAAA-GCATGACAGTAA-GGCA-ACTGGTCTGTAGCTATTcaggagacttctttggtttgttattccctttaaatataaatgggcactatgatatctttct
gi|7 : tactaggtataaaaatgaagataatgcatcaccttgttgaacagaaaaccatcttgattgtgtttggtaaacaacaatagcacttgaagttttgttA-A---CCATAAGGA-TCCTGCC----ACACCGAGATAACGTAATTT--AAACATG-AGAGCATGTCTCCAGAGACAGTATTGAA-GGC-CTT-T-TGCTTATCCA--GAAAAGCAAGTAGACGG-G---ACTACATGTA-C-TGTGGATGTTCTAAGTTGTGGG-AGATAGT-TTCTTG-AAGACCGAAT-GAGGCTA----TAAT-G-GATCCGAGT-CTTCGT---TGAAAG-CCTTGATTTG--TGG-GC--T-TT-G-AAATTGGATGGAT--ggtagacgttttatgtttatctcctcctttgtaaagtggaatgataagtccttgtttcca
gi|8 : tcacaacaactgaacagaaagtacccgtgtgacGTTCCTAAATGGCAGTTGTTGATCAGTG-A---CAA--AG---TTTTGCCTTTTATTCCAATATCATATAGCTT--AAACATC-AAACCATTTCTCC--AAACAGTATCAAA-AGC-TTTAC-TAC-TATCTA--AA-----AAACTGACGT-A---A--ACAT-TA-T-TTCCC-TGTTCTATATTGTGCA-AAATTGT-CTCTTG-AAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAATTGTTTTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGAAC-TAATTT-----TTT----AA-AGATTTT--GAAAAA-ACAGGGCAA-AA-GAGACACTGGCCT-TAGATATTggtagtaacctttgcatctatattttctcaaataattacattagacaaggaagcattttacgttggtcgatagctgtcagg
gi|9 : TGGCAATC----ATCAATA-AGATCCAC-AA---ATAT-CCTGTCACACCGAGATGACGCAATTT--TAGCATG-AGACCGTATGTCC--AGACAGTATTGAA-AGC--CTCT-TGCGTATCAA--GA-----AAG-CAACGT-ACGGA--GGAC-TA-TGTACCA-TGTTCTATGTTGTGGA-AGATACT-TTCTCG-AAAATTGAAT-GAGGCTGTGG-TGGATC-AA---AGTTTTGT--T---TCGAAG-CCTTG--CTG--TTG-TGGGT-TTGG-AAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAAAAAAAAATGAATTGTTCAAAGTGAACAACTCAGCACATCTTTTCTGAGAAATGTACATGTATTCCATAAAGAAATCAAACTTTAAAAGCCATTTTCCCTTTATAAAAAGCTTTCTAGATTTCACTTCAGCAATAACGGGAAGAACATAAAAGGCTGATCCACACAAAGATCAGATCTACACAATCCTGATGTTAAATGTACAATTACATTCAAAAGCGTTGAAACGTGGCGCGCGGTTTGTGACCTTGTGAGGACATGCCGTTCCGGGTCTCGCACACGTACAACAATGACGTAACACAATTCACCTTAAAGATGAGATACGTTGATTGAGTTCAGGTGTTAGGAGTCTAAATCACATAGCGCAAAAACAATTTACGATAAAACTAATAGATGGTACAACTGTACAAACTTAGAATTCATGACAAGGAGATTATCCCAAATACTAGTATACATTACTTCCCTGTTCAACATGTTCCTCATTACACGGAATGGTAGCAAACATGATTGTGGACGCGTTATAGATTTCAGCCAACAGGAATAAATAACAGTATGTTGCGTCTAGTACGCTTTAGAGAGCCGCAAGGGACAATATAAAACACAATGAATTATTGGAATCTGTTAGGAAAAGGCACATGCTATGAATATTCAAGATATTATGAAGGTAAACGTCATAAACAGGATCATTCAAGTGAACTGTATATAAAATTGTGGATAAAACTCCACCTTGCAGAA
Unaligned ( gi|2 ): AAAAACAAAAGATAGAATGGTCAAAAATACACTTTTCGGTAAACTACATGTACATGTATTAGGAACCCAGATCGACAAAGTCGTCCGCTAAAAAATTGTAGATTCCTGCTGTTCATTTTTGCAATGATAAGAAGAACATTAAAAAATAATGATCTACACAATCTTGGTATGAGTTAAATATATTCATATTGTATGGTGTCAACAGTCAAGCTGTGAAGACAACCTATCGATAGAGAACTGATGGTAAAATAATTCGCTAATAAAGGTGGGATACAATGACTGGATGTTGGGAACCTAAATCACATAGCGCAAAGAAATATTTCCCTCATCTTGTCAACAGCTTGCATTTGGTTATGAAAATGATTGTAGATTTCATTATAGGGAAGAATACCACACTGTATTTCTATTTCTATTTAGTTTGTTCCATTTGCACGAAATTTCAGTTCGCATGATATCGAGACATTAAGTGTATATTGAGTCCAATAAGGGATGGAGGGCCGCAAGAGGTGATGCAATACACGGTATGTCGTCTGCTAGAGAAGGGCAGCTTCTTCGTACATTCAAAGTACCTGTATTTAAACTATGAAGTTCGAGAAGATCATTCACGTGCACATATATACAAGATATAAAAATGTGGATAATACACCACCTTGCCGA
Unaligned ( gi|12 ): CCGCAAGGGATAGTTCCCACCTGATTGCCATCTGCTAGAAAAGAGCAACTGTTACGAATATTCAAGATGAAGTTCTGCATTTGAACTATGAAGGTTACAAACGTCATCAACAAGATCATTTACATGAACAATATATGTATACAAATGTGGATAACACTCCACCTTGCAGAA
Unaligned ( gi|13 ): GTTATGGGTTTGGAAATTTTATGGATGGATATGATGACGAGTCCATAGTTTTTATCAAATAATTTTATAAGACTAGGAAGTAGCGCGATTGGTCAGGAAGCTGTTAGTCAATCTTTTGAGCTTTTTACTTCCTTTGTACATGTCAATTGGCGCTATATAAGATCTTTT
Unaligned ( gi|17 ): AGAGAACACCCTCGACTGTGTAAGGTTAACTAC
Alignments
lowQualScore : 11111 1 22222222222222222 2222222 111111111 111111111111111 111 11 11 11111111111 11 11111 444444444444444444444444444444444 111 22222222222222 11111 1111111 111 1
lowQualScore : 1 4 5 5 00000 2 88888888888888888 1 7 1 4 66 0 66 5 55 8 5555555 2 111111111 888888888888888 8888888 2 88 333 0 3 44 1 11 6 22222222222 3 3 0 2 2 22 666 3 55 55 55555 3 3 1 555555555555555555555555555555555 5 111 0 5 11111111111111 2 22222 6666666 1 2 777 1 5 1 000 8 3 3
lowQualScore : . . . . ..... . ................. . . . . .. . .. . .. . ....... . ......... ............... ....... . .. ... . . .. . .. . ........... . . . . . .. ... . .. .. ..... . . . ................................. . ... . . .............. . ..... ....... . . ... . . . ... . . .
lowQualScore : 0 2 2 2 44444 4 55555555555555555 0 4 0 2 99 5 00 7 55 0 3333333 9 888888888 999999999999999 4444444 7 11 777 5 6 88 2 55 5 33333333333 5 5 3 8 8 33 444 6 00 00 33333 6 6 0 111111111111111111111111111111111 0 999 4 0 55555555555555 2 55555 6666666 0 2 999 1 0 0 111 0 6 2
consensus : GTTCCTNGATGACAATCGTCGATCAGTG-A---CCACAG---TTCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGCTTT-NNTGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
Reference ( family-1374 ) : GTTCCTNGATGACAATCGTTGATCAGTA-A---CCACAG---TTCTGCCTTTN---ACNCCGAGATNATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGCTTT-NNTGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
gi|10 : CAT-TCTC---AAACTGTGTCCAA-AGCTTTAAATG----TC-----A-----AAGCTAACAT-----A--ACAT-TG-T-TGCCT-TGT--AATGTTATGC--AAATTGTATTCTTGTTATATT--AT-GA-GCGG---T--T-AG-C-ATCTAGTTGTTTA-T---TGGAAA-ATCTG--GTG--TTG-TTGAC-AGGG-AAAGCG---------T-C------------------------ATTCGTAAT-------AA---AAAACTTAGTTTTCTTGTTT----AATACATTTT--CAAAAA-A
gi|11 : tatcaaaagtTCTCC--AAACTGTGTCCAA-G--TTT-CAAA---ATTCA---A-----AAGT-AACAT-A---A--ACAT-TG-T-TGCCT-TGTTA-ATGTTATGCATCAATTGT-TTCTTGTTATATTGA------GCGG---T--TAGG-C-ATCTAGTTGTTT--T---GGAAAA-TCATG--GTG--TTG-TTGATAGTGG-AAA
gi|14 : tcaaaagtctACTGT-CTCTTGTAATATAAAA--GATGCTG---T--TATA-CAACTTAAACTCTT--T---TGATAA-CCTTG--TTG--CTG-GACAT-TTGG-GAAATGCAC--AT--TACATAGGG------T-------AAATGATTGT-ATAC-GAT-AA---TAGAT-GATTTT-----TTCCCCTGA-AAACCTT--GAGAAA-gctgtcattcgtaataaaaaattaagttt
gi|15 : TGTGGC-AAGTAGT-CTCTTGTAGG-TTAAAG-GAAGCT---------------------TGTTTG-T---TGGAAA-CCTTG--TTGATTT------T-TTGG-AAAATTATTTAAA--G-G-TAGGA------TG------CGA-GTTCG-AATTC-GAG-TA---AGTAA-AAGCTT-----TTC----AA-ATATTTT--AAGTAG-ACATGGAAGtgtacagtgta
gi|16 : ---TTCTACCCTTG---ATCCC---ATTATGTAGTTT--AACCATC-AAACATTCTCTCC--ATACAGAGTCAAA-GGCTTT-GGTacgagctatgg
gi|3 : GTTCCTTGATGACAATTGTTGATCTGTA-A---CCA-AG---TTTTGCCTTTT---ATTTCAAGATCATACAGCTTTGAAAAATC-AAACCATTTCTTC--AAACAGTA-CATA-AGCTTT-ACTAC-TATCCA--AA-----AAACTGACAT-A---A--ACAT-TG-T-TTCCA-CATTCTATGTTGTGTA-AAAATGT-CTCTTG-AAAATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTA--TTG--TTG-ATAAT-TTGGAAAAATGG-TTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGATT-TAA-TT-----TTC----AA-AGATTTTGAAAAAAA-ACAGGGCA--AATGGGATATCGGTGTATAACTAtccgtgtaaaa
gi|4 : caagatacaaaaacgtagacaggacaccgccctgccttacaccttgatctacagagaaccatctagattgagcttggtttacaatgatagagctaaatatgtgtaaatATG-CAGTCATCGATAAGAG-A---CCATAG-------GCGTCCAGAGACTCCAAGCAGTTG-AGCTT--ATGCATTGAGACCATGTCTCC--ACACCGTGTCGAATTGCTTT--CTGCGTATCCAGGGA-----AAGCC-ACATGA---G--ACA---GAC-TACCG-AGTCGTATATTGTG---AAATAGT-TTCTTGC-AGGTTAAACGGATGCCG---T--GATA-CAGCCCAGGTTCTT--T---TGGAGATCCCTG--CTG--TTGCGTG-T-TTGG-AAATTCTAT--AT------TGGAAAGGACGT-------GGA-GTTT---ATTCTGCGTAA---TCAAC--AGTTT-----CTCG---GA-ATATTTT--TAAAAAGGCATGGAAGT-A-GGGCTATTGGTCTGTAGCTGTcatgtattgcaaagagttttcagttggtcaccacctttgtacagtgggactattagaattcgtttcca
gi|5 : taaataaaaggaatgttgaagtattcctccctttgacggactccttgccgaaacaggaaaccaatcggacttggtcgggtttacgacgacggaacagaagtatgcagtTGACAATCGTCGATTAGGG-T---CCAGAGGGATCCAG----TA---ACTCCAAGACGTTGTAGTTT--ATACATG-AGACCATGTCTCC--AAACAGTGCCGAACGCCTTT-TGTG--TGTTCA--GG-----AAGGCAATAT-A---G--ACGG-AA-C-TACCG-TGTTCTAAGTTATGGA-ATATTGT-TTCTTG-AAGATTGAAG-GAGGCTGTGAT--TGAACCAAGTGAGG-GC--------TGCAAG-CCTTG--TTA--CTG-GGGAT-TTGG-AAACTGAATGGAT--A-T-TAGAA------TATTAAGACGA-ATCC----TTT-GAA-TA---AG----TATTTT-----CTC----GA-ATAATTT--CATAAA-ACATGGTAATAA-GGTA-ATCGGACGGTAACTGTcagtgatttttctccggtttgttgtttcctttgtgtattggatcaataatgtctctgt
gi|6 : taagtaaagaaaggtggaaagaagtccaccttgccttacaccttgagaaacgggaaaccaacggtagttgctctggtttacagcaaccgaacagaacgtgtcggagATGACAAACTTTGAT-AATAGA---CCACAG---TT-TACCACTT---ACACCTAAATGATACCATTT--GCATAGA-AGACCGTGCCTCC--AAAAAGTATCGAA-GGCTTT-GGAGC-TCTCGA--GA-----AGGC-----------------T-TA-C-TACCA-TTTTCTAAATAATACT-ATATTGT-TTCCTGTAAGTTTTAA--GATGCCG---T--TGAA-CAGCCT---TATTT--TTCCTGAAAC-CCCTG--TTG--TTGCGTG-T-TTGG-AAAA-GAA-TGATCAT-C-TAGAA------T-------ATA-TTTCTTAATTC-TAT-TATTCAAAAC--AATTC-----TTA----AACAAA---T--CAGAAA-GCATGACAGTAA-GGCA-ACTGGTCTGTAGCTATTcaggagacttctttggtttgttattccctttaaatataaatgggcactatgatatctttct
gi|7 : tactaggtataaaaatgaagataatgcatcaccttgttgaacagaaaaccatcttgattgtgtttggtaaacaacaatagcacttgaagttttgttA-A---CCATAAGGATCCTGCC-------ACACCGAGATAACGTAATTT--AAACATG-AGAGCATGTCTCCAGAGACAGTATTGAA-GGCCTT--TTGCTTATCCA--GAAAAGCAAGTAGACGG-G---ACTACATGTA-C-TGTGGATGTTCTAAGTTGTGGG-AGATAGT-TTCTTG-AAGACCGAAT-GAGGCTA------TAAT-GGATCCGAGT-CTTCGT---TGAAAG-CCTTGATTTG--TGG-GC--T-TT-G-AAATTGGATGGAT--ggtagacgttttatgtttatctcctcctttgtaaagtggaatgataagtccttgtttcca
gi|8 : tcacaacaactgaacagaaagtacccgtgtgacGTTCCTAAATGGCAGTTGTTGATCAGTG-A---CAA-AG---TTTTGCCTTTT---ATTCCAATATCATATAGCTT--AAACATC-AAACCATTTCTCC--AAACAGTATCAAA-AGCTTT-ACTAC-TATCTA--AA-----AAACTGACGT-A---A--ACAT-TA-T-TTCCC-TGTTCTATATTGTGCA-AAATTGT-CTCTTG-AAGATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAATTGTTTTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGAAC-TAATTT-----TTT----AA-AGATTTT--GAAAAA-ACAGGGCAA-AA-GAGACACTGGCCT-TAGATATTggtagtaacctttgcatctatattttctcaaataattacattagacaaggaagcattttacgttggtcgatagctgtcagg
gi|9 : TGGCAATC----ATCAATA-AGATCCACAA---ATAT-CCTGTC---ACACCGAGATGACGCAATTT--TAGCATG-AGACCGTATGTCC--AGACAGTATTGAA-AGC-CT-CTTGCGTATCAA--GA-----AAG-CAACGT-ACGGA--GGAC-TA-TGTACCA-TGTTCTATGTTGTGGA-AGATACT-TTCTCG-AAAATTGAAT-GAGGCTG---TGGTGGATCAA---AGTTTTGT--T---TCGAAG-CCTTG--CTG--TTG-TGGGT-TTGG-AAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAAAAAAAAATGAATTGTTCAAAGTGAACAACTCAGCACATCTTTTCTGAGAAATGTACATGTATTCCATAAAGAAATCAAACTTTAAAAGCCATTTTCCCTTTATAAAAAGCTTTCTAGATTTCACTTCAGCAATAACGGGAAGAACATAAAAGGCTGATCCACACAAAGATCAGATCTACACAATCCTGATGTTAAATGTACAATTACATTCAAAAGCGTTGAAACGTGGCGCGCGGTTTGTGACCTTGTGAGGACATGCCGTTCCGGGTCTCGCACACGTACAACAATGACGTAACACAATTCACCTTAAAGATGAGATACGTTGATTGAGTTCAGGTGTTAGGAGTCTAAATCACATAGCGCAAAAACAATTTACGATAAAACTAATAGATGGTACAACTGTACAAACTTAGAATTCATGACAAGGAGATTATCCCAAATACTAGTATACATTACTTCCCTGTTCAACATGTTCCTCATTACACGGAATGGTAGCAAACATGATTGTGGACGCGTTATAGATTTCAGCCAACAGGAATAAATAACAGTATGTTGCGTCTAGTACGCTTTAGAGAGCCGCAAGGGACAATATAAAACACAATGAATTATTGGAATCTGTTAGGAAAAGGCACATGCTATGAATATTCAAGATATTATGAAGGTAAACGTCATAAACAGGATCATTCAAGTGAACTGTATATAAAATTGTGGATAAAACTCCACCTTGCAGAA
Unaligned ( gi|2 ): AAAAACAAAAGATAGAATGGTCAAAAATACACTTTTCGGTAAACTACATGTACATGTATTAGGAACCCAGATCGACAAAGTCGTCCGCTAAAAAATTGTAGATTCCTGCTGTTCATTTTTGCAATGATAAGAAGAACATTAAAAAATAATGATCTACACAATCTTGGTATGAGTTAAATATATTCATATTGTATGGTGTCAACAGTCAAGCTGTGAAGACAACCTATCGATAGAGAACTGATGGTAAAATAATTCGCTAATAAAGGTGGGATACAATGACTGGATGTTGGGAACCTAAATCACATAGCGCAAAGAAATATTTCCCTCATCTTGTCAACAGCTTGCATTTGGTTATGAAAATGATTGTAGATTTCATTATAGGGAAGAATACCACACTGTATTTCTATTTCTATTTAGTTTGTTCCATTTGCACGAAATTTCAGTTCGCATGATATCGAGACATTAAGTGTATATTGAGTCCAATAAGGGATGGAGGGCCGCAAGAGGTGATGCAATACACGGTATGTCGTCTGCTAGAGAAGGGCAGCTTCTTCGTACATTCAAAGTACCTGTATTTAAACTATGAAGTTCGAGAAGATCATTCACGTGCACATATATACAAGATATAAAAATGTGGATAATACACCACCTTGCCGA
Unaligned ( gi|12 ): CCGCAAGGGATAGTTCCCACCTGATTGCCATCTGCTAGAAAAGAGCAACTGTTACGAATATTCAAGATGAAGTTCTGCATTTGAACTATGAAGGTTACAAACGTCATCAACAAGATCATTTACATGAACAATATATGTATACAAATGTGGATAACACTCCACCTTGCAGAA
Unaligned ( gi|13 ): GTTATGGGTTTGGAAATTTTATGGATGGATATGATGACGAGTCCATAGTTTTTATCAAATAATTTTATAAGACTAGGAAGTAGCGCGATTGGTCAGGAAGCTGTTAGTCAATCTTTTGAGCTTTTTACTTCCTTTGTACATGTCAATTGGCGCTATATAAGATCTTTT
Unaligned ( gi|17 ): AGAGAACACCCTCGACTGTGTAAGGTTAACTAC
Alignments
lowQualScore : 333333333333333333333333 2222222 111111111 111 1111111 111 11 11 11111111111 11 11111 444444444444444444444444444444444 111 22222222222222 11111 1111111 111 1
lowQualScore : 1 4 5 77 222222222222222222222222 1 7 1 4 66 0 66 5 55 8 5555555 2 111111111 666 1 4 1111111 8888888 2 88 333 0 3 44 1 11 6 22222222222 3 3 0 2 2 22 666 3 55 55 55555 3 3 1 555555555555555555555555555555555 5 111 0 5 11111111111111 2 22222 6666666 1 2 777 1 5 1 000 8 3 3
lowQualScore : . . . .. ........................ . . . . .. . .. . .. . ....... . ......... ... . . ....... ....... . .. ... . . .. . .. . ........... . . . . . .. ... . .. .. ..... . . . ................................. . ... . . .............. . ..... ....... . . ... . . . ... . . .
lowQualScore : 0 2 2 66 222222222222222222222222 0 4 4 2 99 5 00 7 55 0 3333333 9 888888888 666 7 4 7777777 4444444 7 11 777 5 6 88 2 55 5 33333333333 5 5 3 8 8 33 444 6 00 00 33333 6 6 0 111111111111111111111111111111111 0 999 4 0 55555555555555 2 55555 6666666 0 2 999 1 0 0 111 0 6 2
consensus : GTTCCTNGATGACAATCGTCGATNAG-TGACCAC----AG---TTCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGCTTTNN-TGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
Reference ( family-1374 ) : GTTCCTNGATGACAATCGTCGATCAG-TGACCAC----AG---TTCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGCTTTNN-TGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
gi|10 : CAT-TCTC---AAACTGTGTCCAA-AGCTTTAAATG----TC-----A-----AAGCTAACAT-A---A---CAT-TG-T-TGCCT-TGT--AATGTTATGC--AAATTGTATTCTTGTTATATT--AT-GA-GCGG---T--T-AG-C-ATCTAGTTGTTTA-T---TGGAAA-ATCTG--GTG--TTG-TTGAC-AGGG-AAAGCG---------T-C------------------------ATTCGTAAT-------AA---AAAACTTAGTTTTCTTGTTT----AATACATTTT--CAAAAA-A
gi|11 : tatcaaaagtTCTCC--AAACTGTGTCCAA-G--TTTCA-AA---ATTCA---A-----AAGT-AACAT-A---A--ACAT-TG-T-TGCCT-TGTTA-ATGTTATGCATCAATTGT-TTCTTGTTATATTGA------GCGG---T--TAGG-C-ATCTAGTTGTTT--T---GGAAAA-TCATG--GTG--TTG-TTGATAGTGG-AAA
gi|14 : tcaaaagtctACTGT-CTCTTGTAATATAAAA--GATGCTG---T--TATA-CAACTTAAACTCTT--T---TGATAA-CCTTG--TTG--CTG-GACAT-TTGG-GAAATGCAC--AT--TACATAGGG------T-------AAATGATTGT-ATAC-GAT-AA---TAGAT-GATTTT-----TTCCCCTGA-AAACCTT--GAGAAA-gctgtcattcgtaataaaaaattaagttt
gi|15 : TGTGGC-AAGTAGT-CTCTTGTAGG-TTAAAG-GAAGCT---------------------TGTTTG-T---TGGAAA-CCTTG--TTGATTT------T-TTGG-AAAATTATTTAAA--G-G-TAGGA------TG------CGA-GTTCG-AATTC-GAG-TA---AGTAA-AAGCTT-----TTC----AA-ATATTTT--AAGTAG-ACATGGAAGtgtacagtgta
gi|16 : ---TTCTACCCTTG---ATCCC---ATTATGTAGTTT--AACCATC-AAACATTCTCTCC--ATACAGAGTCAAA-GGCTTTGG-Tacgagctatgg
gi|3 : GTTCCTTGATGACAATTGTTGATCTG-TAACCA-----AG---TTTTGCCTTTT---ATTTCAAGATCATACAGCTTTGAAAAATC-AAACCATTTCTTC--AAACAGTA-CATA-AGCTTTAC-TAC-TATCCA--AA-----AAACTGACAT-A---A--ACAT-TG-T-TTCCA-CATTCTATGTTGTGTA-AAAATGT-CTCTTG-AAAATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTA--TTG--TTG-ATAAT-TTGGAAAAATGG-TTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGATT-TAA-TT-----TTC----AA-AGATTTTGAAAAAAA-ACAGGGCA--AATGGGATATCGGTGTATAACTAtccgtgtaaaa
gi|4 : caagatacaaaaacgtagacaggacaccgccctgccttacaccttgatctacagagaaccatctagattgagcttggtttacaatgatagagctaaatatgtgtaaatATG-CAGTCATCGATAAG-AGACCAT----AG-------GCGTCCAGAGACTCCAAGCAGTTG-AGCTT--ATGCATTGAGACCATGTCTCC--ACACCGTGTCGAATTGCTTT-C-TGCGTATCCAGGGA-----AAGCC-ACATGA---G--ACA---GAC-TACCG-AGTCGTATATTGTG---AAATAGT-TTCTTGC-AGGTTAAACGGATGCCG---T--GATA-CAGCCCAGGTTCTT--T---TGGAGATCCCTG--CTG--TTGCGTG-T-TTGG-AAATTCTAT--AT------TGGAAAGGACGT-------GGA-GTTT---ATTCTGCGTAA---TCAAC--AGTTT-----CTCG---GA-ATATTTT--TAAAAAGGCATGGAAGT-A-GGGCTATTGGTCTGTAGCTGTcatgtattgcaaagagttttcagttggtcaccacctttgtacagtgggactattagaattcgtttcca
gi|5 : taaataaaaggaatgttgaagtattcctccctttgacggactccttgccgaaacaggaaaccaatcggacttggtcgggtttacgacgacggaacagaagtatgcagtTGACAATCGTCGATTAG-GGTCCAG----AGGGATCCAG----TA---ACTCCAAGACGTTGTAGTTT--ATACATG-AGACCATGTCTCC--AAACAGTGCCGAACGCCTTTTG-TG--TGTTCA--GG-----AAGGCAATAT-A---G--ACGG-AA-C-TACCG-TGTTCTAAGTTATGGA-ATATTGT-TTCTTG-AAGATTGAAG-GAGGCTGTGAT--TGAACCAAGTGAGG-GC--------TGCAAG-CCTTG--TTA--CTG-GGGAT-TTGG-AAACTGAATGGAT--A-T-TAGAA------TATTAAGACGA-ATCC----TTT-GAA-TA---AG----TATTTT-----CTC----GA-ATAATTT--CATAAA-ACATGGTAATAA-GGTA-ATCGGACGGTAACTGTcagtgatttttctccggtttgttgtttcctttgtgtattggatcaataatgtctctgt
gi|6 : taagtaaagaaaggtggaaagaagtccaccttgccttacaccttgagaaacgggaaaccaacggtagttgctctggtttacagcaaccgaacagaacgtgtcggagATGACAAACTTTGATAAT-AGACCAC----AG---TT-TACCACTT---ACACCTAAATGATACCATTT--GCATAGA-AGACCGTGCCTCC--AAAAAGTATCGAA-GGCTTTGG-AGC-TCTCGA--GA-----AGGC-----------------T-TA-C-TACCA-TTTTCTAAATAATACT-ATATTGT-TTCCTGTAAGTTTTAA--GATGCCG---T--TGAA-CAGCCT---TATTT--TTCCTGAAAC-CCCTG--TTG--TTGCGTG-T-TTGG-AAAA-GAA-TGATCAT-C-TAGAA------T-------ATA-TTTCTTAATTC-TAT-TATTCAAAAC--AATTC-----TTA----AACAAA---T--CAGAAA-GCATGACAGTAA-GGCA-ACTGGTCTGTAGCTATTcaggagacttctttggtttgttattccctttaaatataaatgggcactatgatatctttct
gi|7 : tactaggtataaaaatgaagataatgcatcaccttgttgaacagaaaaccatcttgattgtgtttggtaaacaacaatagcacttgaagttttgttG-TGACAACCATAAGGA-TCCTGCC-------ACACCGAGATAACGTAATTT--AAACATG-AGAGCATGTCTCCAGAGACAGTATTGAA-GGCCTT-T-TGCTTATCCA--GAAAAGCAAGTAGACGG-G---ACTACATGTA-C-TGTGGATGTTCTAAGTTGTGGG-AGATAGT-TTCTTG-AAGACCGAAT-GAGGCTA------TAAT-GGATCCGAGT-CTTCGT---TGAAAG-CCTTGATTTG--TGG-GC--T-TT-G-AAATTGGATGGAT--ggtagacgttttatgtttatctcctcctttgtaaagtggaatgataagtccttgtttcca
gi|8 : tcacaacaactgaacagaaagtacccgtGTTCCTAAATGGCAGTTGTTGATCAG-TGACAA-----AG---TTTTGCCTTTT---ATTCCAATATCATATAGCTT--AAACATC-AAACCATTTCTCC--AAACAGTATCAAA-AGCTTTAC-TAC-TATCTA--AA-----AAACTGACGT-A---A--ACAT-TA-T-TTCCC-TGTTCTATATTGTGCA-AAATTGT-CTCTTG-AAGATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAATTGTTTTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGAAC-TAATTT-----TTT----AA-AGATTTT--GAAAAA-ACAGGGCAA-AA-GAGACACTGGCCT-TAGATATTggtagtaacctttgcatctatattttctcaaataattacattagacaaggaagcattttacgttggtcgatagctgtcagg
gi|9 : TGGCAATCATCAATAAGAT--CCAC----AA---ATAT-CCTGTC---ACACCGAGATGACGCAATTT--TAGCATG-AGACCGTATGTCC--AGACAGTATTGAA-AGC-CTCT-TGCGTATCAA--GA-----AAG-CAACGT-ACGGA--GGAC-TA-TGTACCA-TGTTCTATGTTGTGGA-AGATACT-TTCTCG-AAAATTGAAT-GAGGCTG---TGGTGGATCAA---AGTTTTGT--T---TCGAAG-CCTTG--CTG--TTG-TGGGT-TTGG-AAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAAAAAAAAATGAATTGTTCAAAGTGAACAACTCAGCACATCTTTTCTGAGAAATGTACATGTATTCCATAAAGAAATCAAACTTTAAAAGCCATTTTCCCTTTATAAAAAGCTTTCTAGATTTCACTTCAGCAATAACGGGAAGAACATAAAAGGCTGATCCACACAAAGATCAGATCTACACAATCCTGATGTTAAATGTACAATTACATTCAAAAGCGTTGAAACGTGGCGCGCGGTTTGTGACCTTGTGAGGACATGCCGTTCCGGGTCTCGCACACGTACAACAATGACGTAACACAATTCACCTTAAAGATGAGATACGTTGATTGAGTTCAGGTGTTAGGAGTCTAAATCACATAGCGCAAAAACAATTTACGATAAAACTAATAGATGGTACAACTGTACAAACTTAGAATTCATGACAAGGAGATTATCCCAAATACTAGTATACATTACTTCCCTGTTCAACATGTTCCTCATTACACGGAATGGTAGCAAACATGATTGTGGACGCGTTATAGATTTCAGCCAACAGGAATAAATAACAGTATGTTGCGTCTAGTACGCTTTAGAGAGCCGCAAGGGACAATATAAAACACAATGAATTATTGGAATCTGTTAGGAAAAGGCACATGCTATGAATATTCAAGATATTATGAAGGTAAACGTCATAAACAGGATCATTCAAGTGAACTGTATATAAAATTGTGGATAAAACTCCACCTTGCAGAA
Unaligned ( gi|2 ): AAAAACAAAAGATAGAATGGTCAAAAATACACTTTTCGGTAAACTACATGTACATGTATTAGGAACCCAGATCGACAAAGTCGTCCGCTAAAAAATTGTAGATTCCTGCTGTTCATTTTTGCAATGATAAGAAGAACATTAAAAAATAATGATCTACACAATCTTGGTATGAGTTAAATATATTCATATTGTATGGTGTCAACAGTCAAGCTGTGAAGACAACCTATCGATAGAGAACTGATGGTAAAATAATTCGCTAATAAAGGTGGGATACAATGACTGGATGTTGGGAACCTAAATCACATAGCGCAAAGAAATATTTCCCTCATCTTGTCAACAGCTTGCATTTGGTTATGAAAATGATTGTAGATTTCATTATAGGGAAGAATACCACACTGTATTTCTATTTCTATTTAGTTTGTTCCATTTGCACGAAATTTCAGTTCGCATGATATCGAGACATTAAGTGTATATTGAGTCCAATAAGGGATGGAGGGCCGCAAGAGGTGATGCAATACACGGTATGTCGTCTGCTAGAGAAGGGCAGCTTCTTCGTACATTCAAAGTACCTGTATTTAAACTATGAAGTTCGAGAAGATCATTCACGTGCACATATATACAAGATATAAAAATGTGGATAATACACCACCTTGCCGA
Unaligned ( gi|12 ): CCGCAAGGGATAGTTCCCACCTGATTGCCATCTGCTAGAAAAGAGCAACTGTTACGAATATTCAAGATGAAGTTCTGCATTTGAACTATGAAGGTTACAAACGTCATCAACAAGATCATTTACATGAACAATATATGTATACAAATGTGGATAACACTCCACCTTGCAGAA
Unaligned ( gi|13 ): GTTATGGGTTTGGAAATTTTATGGATGGATATGATGACGAGTCCATAGTTTTTATCAAATAATTTTATAAGACTAGGAAGTAGCGCGATTGGTCAGGAAGCTGTTAGTCAATCTTTTGAGCTTTTTACTTCCTTTGTACATGTCAATTGGCGCTATATAAGATCTTTT
Unaligned ( gi|17 ): AGAGAACACCCTCGACTGTGTAAGGTTAACTAC
Alignments
lowQualScore : 11 22222222222222222222 2222222 111111111 111111111111111 111 11 11 11111111111 11 11111 444444444444444444444444444444444 111 22222222222222 11111 1111111 111 1
lowQualScore : 1 2 5 0 1 44 77777777777777777777 1 7 1 4 66 0 66 5 55 8 5555555 2 111111111 888888888888888 8888888 2 88 333 0 3 44 1 11 6 22222222222 3 3 0 2 2 22 666 3 55 55 55555 3 3 1 555555555555555555555555555555555 5 111 0 5 11111111111111 2 22222 6666666 1 2 777 1 5 1 000 8 3 3
lowQualScore : . . . . . .. .................... . . . . .. . .. . .. . ....... . ......... ............... ....... . .. ... . . .. . .. . ........... . . . . . .. ... . .. .. ..... . . . ................................. . ... . . .............. . ..... ....... . . ... . . . ... . . .
lowQualScore : 0 3 3 4 0 66 99999999999999999999 0 4 4 2 99 5 00 7 55 0 3333333 9 888888888 999999999999999 4444444 7 11 777 5 6 88 2 55 5 33333333333 5 5 3 8 8 33 444 6 00 00 33333 6 6 0 111111111111111111111111111111111 0 999 4 0 55555555555555 2 55555 6666666 0 2 999 1 0 0 111 0 6 2
consensus : GTTCCTNGATGACAATCGTCGATAAG-NGACCA-AG---TTCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGCTTT-NNTGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
Reference ( family-1374 ) : GTTCCTNGATGACAATCGTCGATNAG-TGACCACAG---TTCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGCTTT-NNTGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
gi|10 : CAT-TCTC---AAACTGTGTCCAA-AGCTTTAAATG----TC-----A-----AAGCTAACAT-----A--ACAT-TG-T-TGCCT-TGT--AATGTTATGC--AAATTGTATTCTTGTTATATT--AT-GA-GCGG---T--T-AG-C-ATCTAGTTGTTTA-T---TGGAAA-ATCTG--GTG--TTG-TTGAC-AGGG-AAAGCG---------T-C------------------------ATTCGTAAT-------AA---AAAACTTAGTTTTCTTGTTT----AATACATTTT--CAAAAA-A
gi|11 : tatcaaaagtTCTCC--AAACTGTGTCCAA-G--TTT-CAAA---ATTCA---A-----AAGT-AACAT-A---A--ACAT-TG-T-TGCCT-TGTTA-ATGTTATGCATCAATTGT-TTCTTGTTATATTGA------GCGG---T--TAGG-C-ATCTAGTTGTTT--T---GGAAAA-TCATG--GTG--TTG-TTGATAGTGG-AAA
gi|14 : tcaaaagtctACTGT-CTCTTGTAATATAAAA--GATGCTG---T--TATA-CAACTTAAACTCTT--T---TGATAA-CCTTG--TTG--CTG-GACAT-TTGG-GAAATGCAC--AT--TACATAGGG------T-------AAATGATTGT-ATAC-GAT-AA---TAGAT-GATTTT-----TTCCCCTGA-AAACCTT--GAGAAA-gctgtcattcgtaataaaaaattaagttt
gi|15 : TGTGGC-AAGTAGT-CTCTTGTAGG-TTAAAG-GAAGCT---------------------TGTTTG-T---TGGAAA-CCTTG--TTGATTT------T-TTGG-AAAATTATTTAAA--G-G-TAGGA------TG------CGA-GTTCG-AATTC-GAG-TA---AGTAA-AAGCTT-----TTC----AA-ATATTTT--AAGTAG-ACATGGAAGtgtacagtgta
gi|16 : ---TTCTACCCTTG---ATCCC---ATTATGTAGTTT--AACCATC-AAACATTCTCTCC--ATACAGAGTCAAA-GGCTTT-GGTacgagctatgg
gi|3 : GTTCCTTGATGACAATTGTTGATCTG-TAACCA-AG---TTTTGCCTTTT---ATTTCAAGATCATACAGCTTTGAAAAATC-AAACCATTTCTTC--AAACAGTA-CATA-AGCTTT-ACTAC-TATCCA--AA-----AAACTGACAT-A---A--ACAT-TG-T-TTCCA-CATTCTATGTTGTGTA-AAAATGT-CTCTTG-AAAATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTA--TTG--TTG-ATAAT-TTGGAAAAATGG-TTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGATT-TAA-TT-----TTC----AA-AGATTTTGAAAAAAA-ACAGGGCA--AATGGGATATCGGTGTATAACTAtccgtgtaaaa
gi|4 : caagatacaaaaacgtagacaggacaccgccctgccttacaccttgatctacagagaaccatctagattgagcttggtttacaatgatagagctaaatatgtgtaaatATG-CAGTCATCGATAAG-AGACCATAG-------GCGTCCAGAGACTCCAAGCAGTTG-AGCTT--ATGCATTGAGACCATGTCTCC--ACACCGTGTCGAATTGCTTT--CTGCGTATCCAGGGA-----AAGCC-ACATGA---G--ACA---GAC-TACCG-AGTCGTATATTGTG---AAATAGT-TTCTTGC-AGGTTAAACGGATGCCG---T--GATA-CAGCCCAGGTTCTT--T---TGGAGATCCCTG--CTG--TTGCGTG-T-TTGG-AAATTCTAT--AT------TGGAAAGGACGT-------GGA-GTTT---ATTCTGCGTAA---TCAAC--AGTTT-----CTCG---GA-ATATTTT--TAAAAAGGCATGGAAGT-A-GGGCTATTGGTCTGTAGCTGTcatgtattgcaaagagttttcagttggtcaccacctttgtacagtgggactattagaattcgtttcca
gi|5 : taaataaaaggaatgttgaagtattcctccctttgacggactccttgccgaaacaggaaaccaatcggacttggtcgggtttacgacgacggaacagaagtatgcagtTGACAATCGTCGATTAG-GGTCCAGAGGGATCCAG----TA---ACTCCAAGACGTTGTAGTTT--ATACATG-AGACCATGTCTCC--AAACAGTGCCGAACGCCTTT-TGTG--TGTTCA--GG-----AAGGCAATAT-A---G--ACGG-AA-C-TACCG-TGTTCTAAGTTATGGA-ATATTGT-TTCTTG-AAGATTGAAG-GAGGCTGTGAT--TGAACCAAGTGAGG-GC--------TGCAAG-CCTTG--TTA--CTG-GGGAT-TTGG-AAACTGAATGGAT--A-T-TAGAA------TATTAAGACGA-ATCC----TTT-GAA-TA---AG----TATTTT-----CTC----GA-ATAATTT--CATAAA-ACATGGTAATAA-GGTA-ATCGGACGGTAACTGTcagtgatttttctccggtttgttgtttcctttgtgtattggatcaataatgtctctgt
gi|6 : taagtaaagaaaggtggaaagaagtccaccttgccttacaccttgagaaacgggaaaccaacggtagttgctctggtttacagcaaccgaacagaacgtgtcggagATGACAAACTTTGATAAT-AGACCACAG---TT-TACCACTT---ACACCTAAATGATACCATTT--GCATAGA-AGACCGTGCCTCC--AAAAAGTATCGAA-GGCTTT-GGAGC-TCTCGA--GA-----AGGC-----------------T-TA-C-TACCA-TTTTCTAAATAATACT-ATATTGT-TTCCTGTAAGTTTTAA--GATGCCG---T--TGAA-CAGCCT---TATTT--TTCCTGAAAC-CCCTG--TTG--TTGCGTG-T-TTGG-AAAA-GAA-TGATCAT-C-TAGAA------T-------ATA-TTTCTTAATTC-TAT-TATTCAAAAC--AATTC-----TTA----AACAAA---T--CAGAAA-GCATGACAGTAA-GGCA-ACTGGTCTGTAGCTATTcaggagacttctttggtttgttattccctttaaatataaatgggcactatgatatctttct
gi|7 : tactaggtataaaaatgaagataatgcatcaccttgttgaacagaaaaccatcttgattgtgtttggtaaacaacaatagcacttgaagttttgttTGACAACC----ATAAG--GATC---------CTGCC-------ACACCGAGATAACGTAATTT--AAACATG-AGAGCATGTCTCCAGAGACAGTATTGAA-GGCCTT--TTGCTTATCCA--GAAAAGCAAGTAGACGG-G---ACTACATGTA-C-TGTGGATGTTCTAAGTTGTGGG-AGATAGT-TTCTTG-AAGACCGAAT-GAGGCTA------TAAT-GGATCCGAGT-CTTCGT---TGAAAG-CCTTGATTTG--TGG-GC--T-TT-G-AAATTGGATGGAT--ggtagacgttttatgtttatctcctcctttgtaaagtggaatgataagtccttgtttcca
gi|8 : tcacaacaactgaacagaaagtacccgtgGTTCCTAAATGGCAGTTGTTGATCAG-TGACAA-AG---TTTTGCCTTTT---ATTCCAATATCATATAGCTT--AAACATC-AAACCATTTCTCC--AAACAGTATCAAA-AGCTTT-ACTAC-TATCTA--AA-----AAACTGACGT-A---A--ACAT-TA-T-TTCCC-TGTTCTATATTGTGCA-AAATTGT-CTCTTG-AAGATTGAAT-GATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAATTGTTTTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGAAC-TAATTT-----TTT----AA-AGATTTT--GAAAAA-ACAGGGCAA-AA-GAGACACTGGCCT-TAGATATTggtagtaacctttgcatctatattttctcaaataattacattagacaaggaagcattttacgttggtcgatagctgtcagg
gi|9 : TGGCAATCATCAATAAGAT--CCACAA---ATAT-CCTGTC---ACACCGAGATGACGCAATTT--TAGCATG-AGACCGTATGTCC--AGACAGTATTGAA-AGC-CT-CTTGCGTATCAA--GA-----AAG-CAACGT-ACGGA--GGAC-TA-TGTACCA-TGTTCTATGTTGTGGA-AGATACT-TTCTCG-AAAATTGAAT-GAGGCTG---TGGTGGATCAA---AGTTTTGT--T---TCGAAG-CCTTG--CTG--TTG-TGGGT-TTGG-AAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAAAAAAAAATGAATTGTTCAAAGTGAACAACTCAGCACATCTTTTCTGAGAAATGTACATGTATTCCATAAAGAAATCAAACTTTAAAAGCCATTTTCCCTTTATAAAAAGCTTTCTAGATTTCACTTCAGCAATAACGGGAAGAACATAAAAGGCTGATCCACACAAAGATCAGATCTACACAATCCTGATGTTAAATGTACAATTACATTCAAAAGCGTTGAAACGTGGCGCGCGGTTTGTGACCTTGTGAGGACATGCCGTTCCGGGTCTCGCACACGTACAACAATGACGTAACACAATTCACCTTAAAGATGAGATACGTTGATTGAGTTCAGGTGTTAGGAGTCTAAATCACATAGCGCAAAAACAATTTACGATAAAACTAATAGATGGTACAACTGTACAAACTTAGAATTCATGACAAGGAGATTATCCCAAATACTAGTATACATTACTTCCCTGTTCAACATGTTCCTCATTACACGGAATGGTAGCAAACATGATTGTGGACGCGTTATAGATTTCAGCCAACAGGAATAAATAACAGTATGTTGCGTCTAGTACGCTTTAGAGAGCCGCAAGGGACAATATAAAACACAATGAATTATTGGAATCTGTTAGGAAAAGGCACATGCTATGAATATTCAAGATATTATGAAGGTAAACGTCATAAACAGGATCATTCAAGTGAACTGTATATAAAATTGTGGATAAAACTCCACCTTGCAGAA
Unaligned ( gi|2 ): AAAAACAAAAGATAGAATGGTCAAAAATACACTTTTCGGTAAACTACATGTACATGTATTAGGAACCCAGATCGACAAAGTCGTCCGCTAAAAAATTGTAGATTCCTGCTGTTCATTTTTGCAATGATAAGAAGAACATTAAAAAATAATGATCTACACAATCTTGGTATGAGTTAAATATATTCATATTGTATGGTGTCAACAGTCAAGCTGTGAAGACAACCTATCGATAGAGAACTGATGGTAAAATAATTCGCTAATAAAGGTGGGATACAATGACTGGATGTTGGGAACCTAAATCACATAGCGCAAAGAAATATTTCCCTCATCTTGTCAACAGCTTGCATTTGGTTATGAAAATGATTGTAGATTTCATTATAGGGAAGAATACCACACTGTATTTCTATTTCTATTTAGTTTGTTCCATTTGCACGAAATTTCAGTTCGCATGATATCGAGACATTAAGTGTATATTGAGTCCAATAAGGGATGGAGGGCCGCAAGAGGTGATGCAATACACGGTATGTCGTCTGCTAGAGAAGGGCAGCTTCTTCGTACATTCAAAGTACCTGTATTTAAACTATGAAGTTCGAGAAGATCATTCACGTGCACATATATACAAGATATAAAAATGTGGATAATACACCACCTTGCCGA
Unaligned ( gi|12 ): CCGCAAGGGATAGTTCCCACCTGATTGCCATCTGCTAGAAAAGAGCAACTGTTACGAATATTCAAGATGAAGTTCTGCATTTGAACTATGAAGGTTACAAACGTCATCAACAAGATCATTTACATGAACAATATATGTATACAAATGTGGATAACACTCCACCTTGCAGAA
Unaligned ( gi|13 ): GTTATGGGTTTGGAAATTTTATGGATGGATATGATGACGAGTCCATAGTTTTTATCAAATAATTTTATAAGACTAGGAAGTAGCGCGATTGGTCAGGAAGCTGTTAGTCAATCTTTTGAGCTTTTTACTTCCTTTGTACATGTCAATTGGCGCTATATAAGATCTTTT
Unaligned ( gi|17 ): AGAGAACACCCTCGACTGTGTAAGGTTAACTAC
Alignments
lowQualScore : 333333333333333333333 2222222 111111111 111 1111111 111 11 11 11111111111 11 11111 444444444444444444444444444444444 111 22222222222222 11111 1111111 111 1
lowQualScore : 1 2 5 0 1 6 5 666666666666666666666 1 7 1 4 66 0 66 5 55 55 4 5555555 2 111111111 666 1 4 1111111 8888888 2 88 333 0 3 44 1 11 6 22222222222 3 0 2 2 22 666 3 55 55 55555 3 3 1 555555555555555555555555555555555 5 111 0 5 11111111111111 2 22222 6666666 1 2 777 1 5 1 000 8 3 3
lowQualScore : . . . . . . . ..................... . . . . .. . .. . .. .. . ....... . ......... ... . . ....... ....... . .. ... . . .. . .. . ........... . . . . .. ... . .. .. ..... . . . ................................. . ... . . .............. . ..... ....... . . ... . . . ... . . .
lowQualScore : 0 3 3 4 6 6 7 111111111111111111111 0 4 4 2 99 5 00 7 55 44 0 3333333 9 888888888 666 7 4 7777777 4444444 7 11 777 5 6 88 2 55 5 66666666666 5 3 8 8 33 444 6 00 00 33333 6 6 0 111111111111111111111111111111111 0 999 4 0 55555555555555 2 55555 6666666 0 2 999 1 0 0 111 0 6 2
consensus : GTTCCTNGATGACAATCGTCGATAAGNGAC-CA-AG---T-TCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGC-TTTNN-TGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
Reference ( family-1374 ) : GTTCCTNGATGACAATCGTCGATAAGNGAC-CA-AG---T-TCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGC-TTTNN-TGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
gi|10 : CAT-TCTC---AAACTGTGTCCAA-AGC-TTTAAATG----TC-----A-----AAGCTAACAT-A---A---CAT-TG-T-TGCCT-TGT--AATGTTATGC--AAATTGTATTCTTGTTATATT--AT-GA-GCGGT---T-AG-C--ATCTAGTTGTTTA-T---TGGAAA-ATCTG--GTG--TTG-TTGAC-AGGG-AAAGCG---------T-C------------------------ATTCGTAAT-------AA---AAAACTTAGTTTTCTTGTTT----AATACATTTT--CAAAAA-A
gi|11 : tatcaaaagtTCTCC--AAACTGTGTCCAA-G---TTTCA-AA---ATTCA---A-----AAGT-AACAT-A---A--ACAT-TG-T-TGCCT-TGTTA-ATGTTATGCATCAATTGT-TTCTTGTTATATTGA------GCGGT---TAGG-C--ATCTAGTTGTTT--T---GGAAAA-TCATG--GTG--TTG-TTGATAGTGG-AAA
gi|14 : tcaaaagtctACTGT-CTCTTGTAATATAAAA--GATGCTGT---TATA-C-AACTTAAACTCTT--T---TGATAA-CCTTG--TTG--CTG-GACAT-TTGG-GAAATGCAC--AT--TACATAGGG------T-------AAATGATTGT-ATAC-GAT-AA---TAGAT-GATTTT-----TTCCCCTGA-AAACCTT--GAGAAA-gctgtcattcgtaataaaaaattaagttt
gi|15 : TGTGGC-AAGTAGT-CTCTTGTAGG-TTAAAG-GAAGCT--------------------TGTTTG-T---TGGAAA-CCTTG--TTGATTT------T-TTGG-AAAATTATTTAAA--G-G-TAGGA------TG------CGA-GTTCG-AATTC-GAG-TA---AGTAA-AAGCTT-----TTC----AA-ATATTTT--AAGTAG-ACATGGAAGtgtacagtgta
gi|16 : ---T-TCTACCCTTG---ATCCC---ATTATGTAGTTT--AACCATC-AAACATTCTCTCC--ATACAGAGTCAAA-GGC-TTTGG-Tacgagctatgg
gi|3 : GTTCCTTGATGACAATTGTTGATCTGTAAC-CA-AG---T-TTTGCCTTTT---ATTTCAAGATCATACAGCTTTGAAAAATC-AAACCATTTCTTC--AAACAGTA-CATA-AGC-TTTAC-TAC-TATCCA--AA-----AAACTGACAT-A---A--ACAT-TG-T-TTCCA-CATTCTATGTTGTGTA-AAAATGT-CTCTTG-AAAATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTA--TTG--TTG-ATAAT-TTGGAAAAATGG-TTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGATT-TAA-TT-----TTC----AA-AGATTTTGAAAAAAA-ACAGGGCA--AATGGGATATCGGTGTATAACTAtccgtgtaaaa
gi|4 : caagatacaaaaacgtagacaggacaccgccctgccttacaccttgatctacagagaaccatctagattgagcttggtttacaatgatagagctaaatatgtgtaaatATG-CAGTCATCGATAAGAGAC-CATAG--------GCGTCCAGAGACTCCAAGCAGTTG-AGCTT--ATGCATTGAGACCATGTCTCC--ACACCGTGTCGAATTGC-TTT-C-TGCGTATCCAGGGA-----AAGCC-ACATGA---G--ACA---GAC-TACCG-AGTCGTATATTGTG---AAATAGT-TTCTTGC-AGGTTAAACGGATGCCGT---GATA-C-AGCCCAGGTTCTT--T---TGGAGATCCCTG--CTG--TTGCGTG-T-TTGG-AAATTCTAT--AT------TGGAAAGGACGT-------GGA-GTTT---ATTCTGCGTAA---TCAAC--AGTTT-----CTCG---GA-ATATTTT--TAAAAAGGCATGGAAGT-A-GGGCTATTGGTCTGTAGCTGTcatgtattgcaaagagttttcagttggtcaccacctttgtacagtgggactattagaattcgtttcca
gi|5 : taaataaaaggaatgttgaagtattcctccctttgacggactccttgccgaaacaggaaaccaatcggacttggtcgggtttacgacgacggaacagaagtatgcagtTGACAATCGTCGATTAGGGTC-CAGAGGGAT-CCAG----TA---ACTCCAAGACGTTGTAGTTT--ATACATG-AGACCATGTCTCC--AAACAGTGCCGAA-CGCCTTTTG-TG--TGTTCA--GG-----AAGGCAATAT-A---G--ACGG-AA-C-TACCG-TGTTCTAAGTTATGGA-ATATTGT-TTCTTG-AAGATTGAAG-GAGGCTGTGATTGAA-CCAAGTGAGG-GCT--------GCAAG-CCTTG--TTA--CTG-GGGAT-TTGG-AAACTGAATGGAT--A-T-TAGAA------TATTAAGACGA-ATCC----TTT-GAA-TA---AG----TATTTT-----CTC----GA-ATAATTT--CATAAA-ACATGGTAATAA-GGTA-ATCGGACGGTAACTGTcagtgatttttctccggtttgttgtttcctttgtgtattggatcaataatgtctctgt
gi|6 : taagtaaagaaaggtggaaagaagtccaccttgccttacaccttgagaaacgggaaaccaacggtagttgctctggtttacagcaaccgaacagaacgtgtcggagATGACAAACTTTGATAATAGAC-CACAG---T-T-TACCACTT---ACACCTAAATGATACCATTT--GCATAGA-AGACCGTGCCTCC--AAAAAGTATCGAA-GGC-TTTGG-AGC-TCTCGA--GA-----AGGC-----------------T-TA-C-TACCA-TTTTCTAAATAATACT-ATATTGT-TTCCTGTAAGTTTTAA--GATGCCGT---TGAA-C-AGCCT---TATTT--TTCCTGAAAC-CCCTG--TTG--TTGCGTG-T-TTGG-AAAA-GAA-TGATCAT-C-TAGAA------T-------ATA-TTTCTTAATTC-TAT-TATTCAAAAC--AATTC-----TTA----AACAAA---T--CAGAAA-GCATGACAGTAA-GGCA-ACTGGTCTGTAGCTATTcaggagacttctttggtttgttattccctttaaatataaatgggcactatgatatctttct
gi|7 : tactaggtataaaaatgaagataatgcatcaccttgttgaacagaaaaccatcttgattgtgtttggtaaacaacaatagcacttgaagttttgttTGACAACC----ATAAG-GAT-C----------CTGCC-------ACACCGAGATAACGTAATTT--AAACATG-AGAGCATGTCTCCAGAGACAGTATTGAA-GGC-CTT-T-TGCTTATCCA--GAAAAGCAAGTAGACGG-G---ACTACATGTA-C-TGTGGATGTTCTAAGTTGTGGG-AGATAGT-TTCTTG-AAGACCGAAT-GAGGCTA----TAAT-G-GATCCGAGT-CTTCGT---TGAAAG-CCTTGATTTG--TGG-GC--T-TT-G-AAATTGGATGGAT--ggtagacgttttatgtttatctcctcctttgtaaagtggaatgataagtccttgtttcca
gi|8 : tcacaacaactgaacagaaagtacccgtgGTTCCTAAATGGCAGTTGTTGATCAGTGAC-AA-AG---T-TTTGCCTTTT---ATTCCAATATCATATAGCTT--AAACATC-AAACCATTTCTCC--AAACAGTATCAAA-AGC-TTTAC-TAC-TATCTA--AA-----AAACTGACGT-A---A--ACAT-TA-T-TTCCC-TGTTCTATATTGTGCA-AAATTGT-CTCTTG-AAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAATTGTTTTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGAAC-TAATTT-----TTT----AA-AGATTTT--GAAAAA-ACAGGGCAA-AA-GAGACACTGGCCT-TAGATATTggtagtaacctttgcatctatattttctcaaataattacattagacaaggaagcattttacgttggtcgatagctgtcagg
gi|9 : TGGCAATCATCAATAAGATCCACA-AA---TATC---CTGTC---ACACCGAGATGACGCAATTT--TAGCATG-AGACCGTATGTCC--AGACAGTATTGAA-AGC--CTCT-TGCGTATCAA--GA-----AAG-CAACGT-ACGGA--GGAC-TA-TGTACCA-TGTTCTATGTTGTGGA-AGATACT-TTCTCG-AAAATTGAAT-GAGGCTGTGG-TGGATC-AA---AGTTTTGT--T---TCGAAG-CCTTG--CTG--TTG-TGGGT-TTGG-AAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAAAAAAAAATGAATTGTTCAAAGTGAACAACTCAGCACATCTTTTCTGAGAAATGTACATGTATTCCATAAAGAAATCAAACTTTAAAAGCCATTTTCCCTTTATAAAAAGCTTTCTAGATTTCACTTCAGCAATAACGGGAAGAACATAAAAGGCTGATCCACACAAAGATCAGATCTACACAATCCTGATGTTAAATGTACAATTACATTCAAAAGCGTTGAAACGTGGCGCGCGGTTTGTGACCTTGTGAGGACATGCCGTTCCGGGTCTCGCACACGTACAACAATGACGTAACACAATTCACCTTAAAGATGAGATACGTTGATTGAGTTCAGGTGTTAGGAGTCTAAATCACATAGCGCAAAAACAATTTACGATAAAACTAATAGATGGTACAACTGTACAAACTTAGAATTCATGACAAGGAGATTATCCCAAATACTAGTATACATTACTTCCCTGTTCAACATGTTCCTCATTACACGGAATGGTAGCAAACATGATTGTGGACGCGTTATAGATTTCAGCCAACAGGAATAAATAACAGTATGTTGCGTCTAGTACGCTTTAGAGAGCCGCAAGGGACAATATAAAACACAATGAATTATTGGAATCTGTTAGGAAAAGGCACATGCTATGAATATTCAAGATATTATGAAGGTAAACGTCATAAACAGGATCATTCAAGTGAACTGTATATAAAATTGTGGATAAAACTCCACCTTGCAGAA
Unaligned ( gi|2 ): AAAAACAAAAGATAGAATGGTCAAAAATACACTTTTCGGTAAACTACATGTACATGTATTAGGAACCCAGATCGACAAAGTCGTCCGCTAAAAAATTGTAGATTCCTGCTGTTCATTTTTGCAATGATAAGAAGAACATTAAAAAATAATGATCTACACAATCTTGGTATGAGTTAAATATATTCATATTGTATGGTGTCAACAGTCAAGCTGTGAAGACAACCTATCGATAGAGAACTGATGGTAAAATAATTCGCTAATAAAGGTGGGATACAATGACTGGATGTTGGGAACCTAAATCACATAGCGCAAAGAAATATTTCCCTCATCTTGTCAACAGCTTGCATTTGGTTATGAAAATGATTGTAGATTTCATTATAGGGAAGAATACCACACTGTATTTCTATTTCTATTTAGTTTGTTCCATTTGCACGAAATTTCAGTTCGCATGATATCGAGACATTAAGTGTATATTGAGTCCAATAAGGGATGGAGGGCCGCAAGAGGTGATGCAATACACGGTATGTCGTCTGCTAGAGAAGGGCAGCTTCTTCGTACATTCAAAGTACCTGTATTTAAACTATGAAGTTCGAGAAGATCATTCACGTGCACATATATACAAGATATAAAAATGTGGATAATACACCACCTTGCCGA
Unaligned ( gi|12 ): CCGCAAGGGATAGTTCCCACCTGATTGCCATCTGCTAGAAAAGAGCAACTGTTACGAATATTCAAGATGAAGTTCTGCATTTGAACTATGAAGGTTACAAACGTCATCAACAAGATCATTTACATGAACAATATATGTATACAAATGTGGATAACACTCCACCTTGCAGAA
Unaligned ( gi|13 ): GTTATGGGTTTGGAAATTTTATGGATGGATATGATGACGAGTCCATAGTTTTTATCAAATAATTTTATAAGACTAGGAAGTAGCGCGATTGGTCAGGAAGCTGTTAGTCAATCTTTTGAGCTTTTTACTTCCTTTGTACATGTCAATTGGCGCTATATAAGATCTTTT
Unaligned ( gi|17 ): AGAGAACACCCTCGACTGTGTAAGGTTAACTAC
Alignments
lowQualScore : 333333333333333333333 2222222 111111111 111 1111111 111 11 11 11111111111 11 11111 444444444444444444444444444444444 111 22222222222222 11111 1111111 111 1
lowQualScore : 1 2 5 0 1 6 5 666666666666666666666 1 7 1 4 66 0 66 5 55 55 4 5555555 2 111111111 666 1 4 1111111 8888888 2 88 333 0 3 44 1 11 6 22222222222 3 0 2 2 22 666 3 55 55 55555 3 3 1 555555555555555555555555555555555 5 111 0 5 11111111111111 2 22222 6666666 1 2 777 1 5 1 000 8 3 3
lowQualScore : . . . . . . . ..................... . . . . .. . .. . .. .. . ....... . ......... ... . . ....... ....... . .. ... . . .. . .. . ........... . . . . .. ... . .. .. ..... . . . ................................. . ... . . .............. . ..... ....... . . ... . . . ... . . .
lowQualScore : 0 3 3 4 6 6 7 111111111111111111111 0 4 4 2 99 5 00 7 55 44 0 3333333 9 888888888 666 7 4 7777777 4444444 7 11 777 5 6 88 2 55 5 66666666666 5 3 8 8 33 444 6 00 00 33333 6 6 0 111111111111111111111111111111111 0 999 4 0 55555555555555 2 55555 6666666 0 2 999 1 0 0 111 0 6 2
consensus : GTTCCTNGATGACAATCGTCGATAAGNGAC-CA-AG---T-TCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGC-TTTNN-TGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
Reference ( family-1374 ) : GTTCCTNGATGACAATCGTCGATAAGNGAC-CA-AG---T-TCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGC-TTTNN-TGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
gi|10 : CAT-TCTC---AAACTGTGTCCAA-AGC-TTTAAATG----TC-----A-----AAGCTAACAT-A---A---CAT-TG-T-TGCCT-TGT--AATGTTATGC--AAATTGTATTCTTGTTATATT--AT-GA-GCGGT---T-AG-C--ATCTAGTTGTTTA-T---TGGAAA-ATCTG--GTG--TTG-TTGAC-AGGG-AAAGCG---------T-C------------------------ATTCGTAAT-------AA---AAAACTTAGTTTTCTTGTTT----AATACATTTT--CAAAAA-A
gi|11 : tatcaaaagtTCTCC--AAACTGTGTCCAA-G---TTTCA-AA---ATTCA---A-----AAGT-AACAT-A---A--ACAT-TG-T-TGCCT-TGTTA-ATGTTATGCATCAATTGT-TTCTTGTTATATTGA------GCGGT---TAGG-C--ATCTAGTTGTTT--T---GGAAAA-TCATG--GTG--TTG-TTGATAGTGG-AAA
gi|14 : tcaaaagtctACTGT-CTCTTGTAATATAAAA--GATGCTGT---TATA-C-AACTTAAACTCTT--T---TGATAA-CCTTG--TTG--CTG-GACAT-TTGG-GAAATGCAC--AT--TACATAGGG------T-------AAATGATTGT-ATAC-GAT-AA---TAGAT-GATTTT-----TTCCCCTGA-AAACCTT--GAGAAA-gctgtcattcgtaataaaaaattaagttt
gi|15 : TGTGGC-AAGTAGT-CTCTTGTAGG-TTAAAG-GAAGCT--------------------TGTTTG-T---TGGAAA-CCTTG--TTGATTT------T-TTGG-AAAATTATTTAAA--G-G-TAGGA------TG------CGA-GTTCG-AATTC-GAG-TA---AGTAA-AAGCTT-----TTC----AA-ATATTTT--AAGTAG-ACATGGAAGtgtacagtgta
gi|16 : ---T-TCTACCCTTG---ATCCC---ATTATGTAGTTT--AACCATC-AAACATTCTCTCC--ATACAGAGTCAAA-GGC-TTTGG-Tacgagctatgg
gi|3 : GTTCCTTGATGACAATTGTTGATCTGTAAC-CA-AG---T-TTTGCCTTTT---ATTTCAAGATCATACAGCTTTGAAAAATC-AAACCATTTCTTC--AAACAGTA-CATA-AGC-TTTAC-TAC-TATCCA--AA-----AAACTGACAT-A---A--ACAT-TG-T-TTCCA-CATTCTATGTTGTGTA-AAAATGT-CTCTTG-AAAATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTA--TTG--TTG-ATAAT-TTGGAAAAATGG-TTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGATT-TAA-TT-----TTC----AA-AGATTTTGAAAAAAA-ACAGGGCA--AATGGGATATCGGTGTATAACTAtccgtgtaaaa
gi|4 : caagatacaaaaacgtagacaggacaccgccctgccttacaccttgatctacagagaaccatctagattgagcttggtttacaatgatagagctaaatatgtgtaaatATG-CAGTCATCGATAAGAGAC-CATAG--------GCGTCCAGAGACTCCAAGCAGTTG-AGCTT--ATGCATTGAGACCATGTCTCC--ACACCGTGTCGAATTGC-TTT-C-TGCGTATCCAGGGA-----AAGCC-ACATGA---G--ACA---GAC-TACCG-AGTCGTATATTGTG---AAATAGT-TTCTTGC-AGGTTAAACGGATGCCGT---GATA-C-AGCCCAGGTTCTT--T---TGGAGATCCCTG--CTG--TTGCGTG-T-TTGG-AAATTCTAT--AT------TGGAAAGGACGT-------GGA-GTTT---ATTCTGCGTAA---TCAAC--AGTTT-----CTCG---GA-ATATTTT--TAAAAAGGCATGGAAGT-A-GGGCTATTGGTCTGTAGCTGTcatgtattgcaaagagttttcagttggtcaccacctttgtacagtgggactattagaattcgtttcca
gi|5 : taaataaaaggaatgttgaagtattcctccctttgacggactccttgccgaaacaggaaaccaatcggacttggtcgggtttacgacgacggaacagaagtatgcagtTGACAATCGTCGATTAGGGTC-CAGAGGGAT-CCAG----TA---ACTCCAAGACGTTGTAGTTT--ATACATG-AGACCATGTCTCC--AAACAGTGCCGAA-CGCCTTTTG-TG--TGTTCA--GG-----AAGGCAATAT-A---G--ACGG-AA-C-TACCG-TGTTCTAAGTTATGGA-ATATTGT-TTCTTG-AAGATTGAAG-GAGGCTGTGATTGAA-CCAAGTGAGG-GCT--------GCAAG-CCTTG--TTA--CTG-GGGAT-TTGG-AAACTGAATGGAT--A-T-TAGAA------TATTAAGACGA-ATCC----TTT-GAA-TA---AG----TATTTT-----CTC----GA-ATAATTT--CATAAA-ACATGGTAATAA-GGTA-ATCGGACGGTAACTGTcagtgatttttctccggtttgttgtttcctttgtgtattggatcaataatgtctctgt
gi|6 : taagtaaagaaaggtggaaagaagtccaccttgccttacaccttgagaaacgggaaaccaacggtagttgctctggtttacagcaaccgaacagaacgtgtcggagATGACAAACTTTGATAATAGAC-CACAG---T-T-TACCACTT---ACACCTAAATGATACCATTT--GCATAGA-AGACCGTGCCTCC--AAAAAGTATCGAA-GGC-TTTGG-AGC-TCTCGA--GA-----AGGC-----------------T-TA-C-TACCA-TTTTCTAAATAATACT-ATATTGT-TTCCTGTAAGTTTTAA--GATGCCGT---TGAA-C-AGCCT---TATTT--TTCCTGAAAC-CCCTG--TTG--TTGCGTG-T-TTGG-AAAA-GAA-TGATCAT-C-TAGAA------T-------ATA-TTTCTTAATTC-TAT-TATTCAAAAC--AATTC-----TTA----AACAAA---T--CAGAAA-GCATGACAGTAA-GGCA-ACTGGTCTGTAGCTATTcaggagacttctttggtttgttattccctttaaatataaatgggcactatgatatctttct
gi|7 : tactaggtataaaaatgaagataatgcatcaccttgttgaacagaaaaccatcttgattgtgtttggtaaacaacaatagcacttgaagttttgttTGACAACC----ATAAG-GAT-C----------CTGCC-------ACACCGAGATAACGTAATTT--AAACATG-AGAGCATGTCTCCAGAGACAGTATTGAA-GGC-CTT-T-TGCTTATCCA--GAAAAGCAAGTAGACGG-G---ACTACATGTA-C-TGTGGATGTTCTAAGTTGTGGG-AGATAGT-TTCTTG-AAGACCGAAT-GAGGCTA----TAAT-G-GATCCGAGT-CTTCGT---TGAAAG-CCTTGATTTG--TGG-GC--T-TT-G-AAATTGGATGGAT--ggtagacgttttatgtttatctcctcctttgtaaagtggaatgataagtccttgtttcca
gi|8 : tcacaacaactgaacagaaagtacccgtgGTTCCTAAATGGCAGTTGTTGATCAGTGAC-AA-AG---T-TTTGCCTTTT---ATTCCAATATCATATAGCTT--AAACATC-AAACCATTTCTCC--AAACAGTATCAAA-AGC-TTTAC-TAC-TATCTA--AA-----AAACTGACGT-A---A--ACAT-TA-T-TTCCC-TGTTCTATATTGTGCA-AAATTGT-CTCTTG-AAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAATTGTTTTGAT--T-C-TAAAA------T-------TGA-GTTTGTAATTC-GAG-AG---AGAAC-TAATTT-----TTT----AA-AGATTTT--GAAAAA-ACAGGGCAA-AA-GAGACACTGGCCT-TAGATATTggtagtaacctttgcatctatattttctcaaataattacattagacaaggaagcattttacgttggtcgatagctgtcagg
gi|9 : TGGCAATCATCAATAAGATCCACA-AA---TATC---CTGTC---ACACCGAGATGACGCAATTT--TAGCATG-AGACCGTATGTCC--AGACAGTATTGAA-AGC--CTCT-TGCGTATCAA--GA-----AAG-CAACGT-ACGGA--GGAC-TA-TGTACCA-TGTTCTATGTTGTGGA-AGATACT-TTCTCG-AAAATTGAAT-GAGGCTGTGG-TGGATC-AA---AGTTTTGT--T---TCGAAG-CCTTG--CTG--TTG-TGGGT-TTGG-AAA
blockSeqs : A A A A A A TAGGCGTCCAGAG T A C C TG TG C AG TT C CTTGCG C GAAAAGC CTG A G CGGAG TGTAC G GA CAT . TT G CG T GATTGAACCA T T G CG TCC T AT AT TTGA A A A AATGGATATTAGAATATTAAGAC T GTA T TTATTCAAAAC T . CCCTGA A C GAA G G C ATA . T G
blockSeqs : A G T G . GAGGGATCCAGTA T A G T . C T . G . ACTAC C GGGA GCA A . ACTA CTATG T T GC . TA A G A GGTGGATCA C A T G . . . . GACA . . A TATATTGGAAAGGACGTG . TTA . TAATAGATG G . GGA T T G G . A GTA . C G
blockSeqs : A T A A . CAGTTTACCACTT T A G C . G G . G . CTGCG C AA TAG A . AA TTGT A A TA . TA A T T TATACA C G G . . . . . ATAA . . A ATTTAAAGGTAGGATGC . GTA . GTAAGTAAA A . AAC G T A A . T GT . . G
blockSeqs : G G A T . AGTTTTGCCTTTT A T G T . A G . A . GGAGC C GG CTG A . AA TTGT A G GA . TA G G T TAAACA C G G . . . . . CGTG . . T AATGATCATCTAGAATA . GT . GAGAGATTT G . AA T T T A . C AA . . .
blockSeqs : G A C A . AATATCCTGTC A G A T . G G . C . TTGCT G GA TA G . GA GAAC A G CT . A A T G GATACA G G T . . . . . GGGA . . C CACATTACATAGGGTA . GA . GTAATCAAC T . AA T A C T . C
blockSeqs : . . A . . CTGCC T A C C . C G . G . ACTAC C AA CC G . GA TTAC G A GG . C G T T TGAACA C G G . . . . . CGTG . . A TTTTGATTCTAAAATT . . . GAGAGAACT A . GA A T C G .
blockSeqs : A G G . . G T . G . CAAA T GA CA G . AA TTAT T C CA . A T T G TAATGG T G A . . . . . GTGA . . T GTTGATTCTAAAATT . . . ATAAGT A . AA G . G A .
blockSeqs : A . A . TGTG A A C . . . GAC A A GA . A G . T TAAACA C T G . . . . . TGGG . . T
blockSeqs : . A . . . A G . G TAGGC . . T . . . . . GC . .
blockSeqs : . A G . . . . . . . . . . . . . .
blockSeqCons : GA******* AA***** GA* A* TAAACA***** ** NNTGATATTAGAATN****************** ***** AA***** GTA
originalCons : GTTCCTNGATGACAATCGTCGATAAGNGAC-CA-AG---T-TCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGC-TTTNN-TGC-TATCCA--GA-----AAGCCGACGT-A---A--ACAT-TG-C-TGCCG-TGTTCTATGTTGTGNA-AAATTGT-TTCTTGTAAGATTGAAT-GATGCTGT---TAAA-C-AACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNATTGAT--T-C-TAGAA------T-------NGA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTC----GA-ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
finalCons : GTTCCTNGATGACAATCGTCGATAAGNGAC-CA-AG---T-TCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCC--AAACAGTGTCGAA-GGC-TTTNN-TGC-TATCCAGA-------AAGCCGACGT-AAA-----CAT-TG-C-TGCCG-TGTTCTATGTTGTGGA-AAATTGT-TTCTTGA-AGATTGAAT-GATGCTGTTAAACA-----ACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANTGNNTGATATTAGAATN------------------GA-GTTCGTAATTC-GAG-AA---AGAAC-TAGTTT-----TTCAA-----ANATTTT--NAGAAA-ACATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAAAAAAAAATGAATTGTTCAAAGTGAACAACTCAGCACATCTTTTCTGAGAAATGTACATGTATTCCATAAAGAAATCAAACTTTAAAAGCCATTTTCCCTTTATAAAAAGCTTTCTAGATTTCACTTCAGCAATAACGGGAAGAACATAAAAGGCTGATCCACACAAAGATCAGATCTACACAATCCTGATGTTAAATGTACAATTACATTCAAAAGCGTTGAAACGTGGCGCGCGGTTTGTGACCTTGTGAGGACATGCCGTTCCGGGTCTCGCACACGTACAACAATGACGTAACACAATTCACCTTAAAGATGAGATACGTTGATTGAGTTCAGGTGTTAGGAGTCTAAATCACATAGCGCAAAAACAATTTACGATAAAACTAATAGATGGTACAACTGTACAAACTTAGAATTCATGACAAGGAGATTATCCCAAATACTAGTATACATTACTTCCCTGTTCAACATGTTCCTCATTACACGGAATGGTAGCAAACATGATTGTGGACGCGTTATAGATTTCAGCCAACAGGAATAAATAACAGTATGTTGCGTCTAGTACGCTTTAGAGAGCCGCAAGGGACAATATAAAACACAATGAATTATTGGAATCTGTTAGGAAAAGGCACATGCTATGAATATTCAAGATATTATGAAGGTAAACGTCATAAACAGGATCATTCAAGTGAACTGTATATAAAATTGTGGATAAAACTCCACCTTGCAGAA
Unaligned ( gi|2 ): AAAAACAAAAGATAGAATGGTCAAAAATACACTTTTCGGTAAACTACATGTACATGTATTAGGAACCCAGATCGACAAAGTCGTCCGCTAAAAAATTGTAGATTCCTGCTGTTCATTTTTGCAATGATAAGAAGAACATTAAAAAATAATGATCTACACAATCTTGGTATGAGTTAAATATATTCATATTGTATGGTGTCAACAGTCAAGCTGTGAAGACAACCTATCGATAGAGAACTGATGGTAAAATAATTCGCTAATAAAGGTGGGATACAATGACTGGATGTTGGGAACCTAAATCACATAGCGCAAAGAAATATTTCCCTCATCTTGTCAACAGCTTGCATTTGGTTATGAAAATGATTGTAGATTTCATTATAGGGAAGAATACCACACTGTATTTCTATTTCTATTTAGTTTGTTCCATTTGCACGAAATTTCAGTTCGCATGATATCGAGACATTAAGTGTATATTGAGTCCAATAAGGGATGGAGGGCCGCAAGAGGTGATGCAATACACGGTATGTCGTCTGCTAGAGAAGGGCAGCTTCTTCGTACATTCAAAGTACCTGTATTTAAACTATGAAGTTCGAGAAGATCATTCACGTGCACATATATACAAGATATAAAAATGTGGATAATACACCACCTTGCCGA
Unaligned ( gi|12 ): CCGCAAGGGATAGTTCCCACCTGATTGCCATCTGCTAGAAAAGAGCAACTGTTACGAATATTCAAGATGAAGTTCTGCATTTGAACTATGAAGGTTACAAACGTCATCAACAAGATCATTTACATGAACAATATATGTATACAAATGTGGATAACACTCCACCTTGCAGAA
Unaligned ( gi|13 ): GTTATGGGTTTGGAAATTTTATGGATGGATATGATGACGAGTCCATAGTTTTTATCAAATAATTTTATAAGACTAGGAAGTAGCGCGATTGGTCAGGAAGCTGTTAGTCAATCTTTTGAGCTTTTTACTTCCTTTGTACATGTCAATTGGCGCTATATAAGATCTTTT
Unaligned ( gi|17 ): AGAGAACACCCTCGACTGTGTAAGGTTAACTAC
Alignments
lowQualScore : 333333333333333333333 222222222 33333333333333333333 111 11 11111111111 11 11111 44444444444444444444444444444444444 11111111111 22222222222222 11111 11111111 1
lowQualScore : 1 2 5 0 1 6 5 666666666666666666666 1 7 1 4 66 0 66 5 55 666 111111111 2 888 00000000000000000000 777777 2 88 111 0 3 44 1 7 3 6 22222222222 3 3 0 2 2 22 666 3 55 55 55555 3 3 1 55555555555555555555555555555555555 77777777777 0 5 11111111111111 2 22222 33333333 1 2 777 1 5 1 99 88 3 3
lowQualScore : . . . . . . . ..................... . . . . .. . .. . .. ... ......... . ... .................... ...... . .. ... . . .. . . . . ........... . . . . . .. ... . .. .. ..... . . . ................................... ........... . . .............. . ..... ........ . . ... . . . .. .. . .
lowQualScore : 0 3 3 4 6 6 7 111111111111111111111 0 4 4 2 99 5 00 7 55 999 777777777 9 000 44444444444444444444 222222 7 11 333 5 6 88 2 8 6 5 33333333333 5 5 3 8 8 33 444 6 00 00 33333 6 6 0 33333333333333333333333333333333333 11111111111 4 0 55555555555555 2 55555 22222222 0 2 999 1 7 0 33 88 6 2
consensus : GTTCCTNGATGACAATCGTCGATAAGNGAC-CA-AG---T-TCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCCAAA--CAGTGTCGAA-G-GCTTTNN-TGC-T-ATCCAG--AAAGCC-----GACGTA-----A--ACAT-TG-CTGCCG-TGTTCTATGTTGTGGA-AAATTGT-TTCTTG-AAGATTGAATG-ATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANT-G-NNT-GAT-AT-TAGAA------T-------N-GAGT------TCGTAATTC-GAGNA---AG-AAC-TAGTTT-----TTC----G-A-ANATTTT--NAGAAAA-CATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
Reference ( family-1374 ) : GTTCCTNGATGACAATCGTCGATAAGNGAC-CA-AG---T-TCTGCCTTTN---ACNCCGAGATGATGCAGTTT--AAACATN-AGACCATGTCTCCAAA--CAGTGTCGAA-G-GCTTTNN-TGC-T-ATCCAG--AAAGCC-----GACGTA-----A--ACAT-TG-CTGCCG-TGTTCTATGTTGTGGA-AAATTGT-TTCTTG-AAGATTGAATG-ATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAANT-G-NNT-GAT-AT-TAGAA------T-------N-GAGT------TCGTAATTC-GAGAA---AG-AAC-TAGTTT-----TTC----A-A-ANATTTT--NAGAAAA-CATGGCAGTAA-GGGATATCGGTCTGTAGCTATT
gi|10 : CAT-TCTC-AAA--CTGTGTCCAA-A-GCTTTAAATG-----TC-----AAAGCT-----AACATA-----A---CAT-TG-TTGCCT-TGT--AATGTTAT-GC-AAATTGTATTCTTGTTATATT--ATG-A-GCGG---T--T-AG-C-ATCTAGTTGTTTA-T---TGGAAA-ATCTG--GTG--TTG-TTGAC-AGGG-AAAGC-G-TC--------------------------------AT------TCGTAAT------AA---AA-AACTTAGTTTTCTTGTTT----A-ATACATTTT--CAAAAAA-
gi|11 : tatcaaaagtTCTCCAAA--CTGTGTCCAA-G---TTTCA-AA----ATTCA---AAAGT------AACATA-----A--ACAT-TG-TTGCCT-TGTTA-ATGTTATGCATCAATTGT-TTCTTGTTATATTGA------GCGG---T--TAGG-C-ATCTAGTTGTTT--T---GGAAAA-TCATG--GTG--TTG-TTGATAGTGG-AAA
gi|14 : tcaaaagtctACTGT-CTCTTGTAATATAAAA-G-ATGCTG---T--TATA-CAACTTAAACTCTT--T---TGATAA-CCTTG--TTG--CTG-GACAT-TTGG-GAAAT-G-C----AC-AT-TA-CA------T-------A-GGGTAAATGATTGT-ATAC-GATAA---TA-GAT-GATTTT-----TTCCCCTG-A-AAACCTT--GAGAAAgctgtcattcgtaataaaaaattaagttt
gi|15 : TGTGGC-AAGTAGT-CTCTTG-TAGGTTAAAGG-AAGCT---------------------TGTTTG-T---TGGAAA-CCTTG--TTGATTT------T-TTGG-AAAATTA-TTT-AAA-GG-TAGGA------T-------GCGAGT------TCG-AATTC-GAGTA---AG-TAA-AAGCTT-----TTC----A-A-ATATTTT--AAGTAGA-CATGGAAGtgtacagtgta
gi|16 : ---T-TCTACCCTTG---ATCCC---ATTATGTAGTTT--AACCATC-AAACATTCTCTCCATA--CAGAGTCAAA-G-GCTTTGG-Tacgagctatgg
gi|3 : GTTCCTTGATGACAATTGTTGATCTGTAAC-CA-AG---T-TTTGCCTTTT---ATTTCAAGATCATACAGCTTTGAAAAATC-AAACCATTTCTTCAAA--CAGTA-CATA-A-GCTTTAC-TAC-T-ATCCAA--AAAACT-----GACATA-----A--ACAT-TG-TTTCCA-CATTCTATGTTGTGTA-AAAATGT-CTCTTG-AAAATTGAATG-ATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTA--TTG--TTG-ATAAT-TTGGAAAAAT-G-GTT-GAT-TC-TAAAA------T-------T-GAGT------TTGTAATTC-GAGAG---AG-ATT-TAA-TT-----TTC----A-A-AGATTTTGAAAAAAAA-CAGGGCA--AATGGGATATCGGTGTATAACTAtccgtgtaaaa
gi|4 : caagatacaaaaacgtagacaggacaccgccctgccttacaccttgatctacagagaaccatctagattgagcttggtttacaatgatagagctaaatatgtgtaaatATG-CAGTCATCGATAAGAGAC-CATAG--------GCGTCCAGAGACTCCAAGCAGTTG-AGCTT--ATGCATTGAGACCATGTCTCCACA--CCGTGTCGAA-TTGCTTTC--TGCGT-ATCCAGGGAAAGCC------ACATG-----AG-ACA---GACTACCG-AGTCGTATATTGTG---AAATAGT-TTCTTG-CAGGTTAAACGGATGCCG---T--GATA-CAGCCCAGGTTCTT--T---TGGAGATCCCTG--CTG--TTGCGTG-T-TTGG-AAATT----CT--AT-AT-TGGAAAGGACGT-------G-GAGT------TT---ATTCTGCGTA---ATCAAC--AGTTT-----CTC----GGA-ATATTTT--TAAAAAGGCATGGAAGTA--GGGCTATTGGTCTGTAGCTGTcatgtattgcaaagagttttcagttggtcaccacctttgtacagtgggactattagaattcgtttcca
gi|5 : taaataaaaggaatgttgaagtattcctccctttgacggactccttgccgaaacaggaaaccaatcggacttggtcgggtttacgacgacggaacagaagtatgcagtTGACAATCGTCGATTAGGGTC-CAGAGGGAT-CCAG----TA---ACTCCAAGACGTTGTAGTTT--ATACATG-AGACCATGTCTCCAAA--CAGTGCCGAACG-CCTTTTG-TG--T-GTTCAG--GAAGGC-----AATATA-----G--ACGG-AA-CTACCG-TGTTCTAAGTTATGGA-ATATTGT-TTCTTG-AAGATTGAAGG-AGGCTGTGAT--TGAACCAAGTGAGG-GC--------TGCAAG-CCTTG--TTA--CTG-GGGAT-TTGG-AAACT-G-AATGGAT-AT-TAGAA------TATTAAGAC-GAAT------CC----TTT-GAATA---AG-----TATTTT-----CTC----G-A-ATAATTT--CATAAAA-CATGGTAATAA-GGTA-ATCGGACGGTAACTGTcagtgatttttctccggtttgttgtttcctttgtgtattggatcaataatgtctctgt
gi|6 : taagtaaagaaaggtggaaagaagtccaccttgccttacaccttgagaaacgggaaaccaacggtagttgctctggtttacagcaaccgaacagaacgtgtcggagATGACAAACTTTGATAATAGAC-CACAG---T-T-TACCACTT---ACACCTAAATGATACCATTT--GCATAGA-AGACCGTGCCTCCAAA--AAGTATCGAA-G-GCTTTGG-AGC-T-CTCGAG--AAGGC-----------------------T-TA-CTACCA-TTTTCTAAATAATACT-ATATTGT-TTCCTGTAAGTTTTAA-G-ATGCCG---T--TGAA-CAGCCT---TATTT--TTCCTGAAAC-CCCTG--TTG--TTGCGTG-T-TTGG-AAAA--G-AAT-GATCATCTAGAA------T-------A-TATT------TCTTAATTC-TATTATTCAA-AAC--AATTC-----TTA----A-ACAAA---T--CAGAAAG-CATGACAGTAA-GGCA-ACTGGTCTGTAGCTATTcaggagacttctttggtttgttattccctttaaatataaatgggcactatgatatctttct
gi|7 : tactaggtataaaaatgaagataatgcatcaccttgttgaacagaaaaccatcttgattgtgtttggtaaacaacaatagcacttgaagttttgttTGACAACC----ATAAG-GAT-C----------CTGCC-------ACACCGAGATAACGTAATTT--AAACATG-AGAGCATGTCTCCAGAGACAGTATTGAA-G-GCCTTT--TGC-TTATCCAG--AAAAGCAAGTAGACGGG-----ACTACATGTA-CTGTGGATGTTCTAAGTTGTGGG-AGATAGT-TTCTTG-AAGACCGAATG-AGGCTA------TAAT-GGATCCGAGT-CTTCGT---TGAAAG-CCTTGATTTG--TGG-GC--T-TT-G-AAATT-G-GAT-Gggtagacgttttatgtttatctcctcctttgtaaagtggaatgataagtccttgtttcca
gi|8 : tcacaacaactgaacagaaagtacccgtgGTTCCTAAATGGCAGTTGTTGATCAGTGAC-AA-AG---T-TTTGCCTTTT---ATTCCAATATCATATAGCTT--AAACATC-AAACCATTTCTCCAAA--CAGTATCAAA-A-GCTTTAC-TAC-T-ATCTAA--AAAACT-----GACGTA-----A--ACAT-TA-TTTCCC-TGTTCTATATTGTGCA-AAATTGT-CTCTTG-AAGATTGAATG-ATGCTG---T--TAAA-CAACCTAGGTGCTT--T---TGAAAA-CCTTG--TTG--TTG-GTGAT-TTGG-AAATT-GTTTT-GAT-TC-TAAAA------T-------T-GAGT------TTGTAATTC-GAGAG---AG-AAC-TAATTT-----TTT----A-A-AGATTTT--GAAAAAA-CAGGGCAA-AA-GAGACACTGGCCT-TAGATATTgatggtagtaacctttgcatctatattttctcaaataattacattagacaaggaagcattttacgttggtcgatagctgtcagg
gi|9 : TGGCAATCATCAATAAGATCCACA-AA---TATC---CTGTC---ACACCGAGATGACGCAATTT--TAGCATG-AGACCGTATGTCCAGA--CAGTATTGAA-A-GCCT-CT-TGCGT-ATCAAG--AAAGC------AACGTACGGAGG--ACTA-TG--TACCA-TGTTCTATGTTGTGGA-AGATACT-TTCTCG-AAAATTGAATG-AGGCTG---TGGTGGATCAA---AGTTTTGT--T---TCGAAG-CCTTG--CTG--TTG-TGGGT-TTGG-AAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): AAAAAAAAAAATGAATTGTTCAAAGTGAACAACTCAGCACATCTTTTCTGAGAAATGTACATGTATTCCATAAAGAAATCAAACTTTAAAAGCCATTTTCCCTTTATAAAAAGCTTTCTAGATTTCACTTCAGCAATAACGGGAAGAACATAAAAGGCTGATCCACACAAAGATCAGATCTACACAATCCTGATGTTAAATGTACAATTACATTCAAAAGCGTTGAAACGTGGCGCGCGGTTTGTGACCTTGTGAGGACATGCCGTTCCGGGTCTCGCACACGTACAACAATGACGTAACACAATTCACCTTAAAGATGAGATACGTTGATTGAGTTCAGGTGTTAGGAGTCTAAATCACATAGCGCAAAAACAATTTACGATAAAACTAATAGATGGTACAACTGTACAAACTTAGAATTCATGACAAGGAGATTATCCCAAATACTAGTATACATTACTTCCCTGTTCAACATGTTCCTCATTACACGGAATGGTAGCAAACATGATTGTGGACGCGTTATAGATTTCAGCCAACAGGAATAAATAACAGTATGTTGCGTCTAGTACGCTTTAGAGAGCCGCAAGGGACAATATAAAACACAATGAATTATTGGAATCTGTTAGGAAAAGGCACATGCTATGAATATTCAAGATATTATGAAGGTAAACGTCATAAACAGGATCATTCAAGTGAACTGTATATAAAATTGTGGATAAAACTCCACCTTGCAGAA
Unaligned ( gi|2 ): AAAAACAAAAGATAGAATGGTCAAAAATACACTTTTCGGTAAACTACATGTACATGTATTAGGAACCCAGATCGACAAAGTCGTCCGCTAAAAAATTGTAGATTCCTGCTGTTCATTTTTGCAATGATAAGAAGAACATTAAAAAATAATGATCTACACAATCTTGGTATGAGTTAAATATATTCATATTGTATGGTGTCAACAGTCAAGCTGTGAAGACAACCTATCGATAGAGAACTGATGGTAAAATAATTCGCTAATAAAGGTGGGATACAATGACTGGATGTTGGGAACCTAAATCACATAGCGCAAAGAAATATTTCCCTCATCTTGTCAACAGCTTGCATTTGGTTATGAAAATGATTGTAGATTTCATTATAGGGAAGAATACCACACTGTATTTCTATTTCTATTTAGTTTGTTCCATTTGCACGAAATTTCAGTTCGCATGATATCGAGACATTAAGTGTATATTGAGTCCAATAAGGGATGGAGGGCCGCAAGAGGTGATGCAATACACGGTATGTCGTCTGCTAGAGAAGGGCAGCTTCTTCGTACATTCAAAGTACCTGTATTTAAACTATGAAGTTCGAGAAGATCATTCACGTGCACATATATACAAGATATAAAAATGTGGATAATACACCACCTTGCCGA
Unaligned ( gi|12 ): CCGCAAGGGATAGTTCCCACCTGATTGCCATCTGCTAGAAAAGAGCAACTGTTACGAATATTCAAGATGAAGTTCTGCATTTGAACTATGAAGGTTACAAACGTCATCAACAAGATCATTTACATGAACAATATATGTATACAAATGTGGATAACACTCCACCTTGCAGAA
Unaligned ( gi|13 ): GTTATGGGTTTGGAAATTTTATGGATGGATATGATGACGAGTCCATAGTTTTTATCAAATAATTTTATAAGACTAGGAAGTAGCGCGATTGGTCAGGAAGCTGTTAGTCAATCTTTTGAGCTTTTTACTTCCTTTGTACATGTCAATTGGCGCTATATAAGATCTTTT
Unaligned ( gi|17 ): AGAGAACACCCTCGACTGTGTAAGGTTAACTAC