lowQualScore : 1111111
lowQualScore : 1 1 1 5555555 1 333 333 2 3333333333333333333 11 22 111111111 1 88888 55555555555555555555 4444 2 33333 1 11 333 1111 3333 444 3333333 1 4 666 44 2 2 22222 111 111 3333333333333 111111 22222 22222 11 1 222 666666666666666666666666666666666666666666666666
lowQualScore : 5 5 5 6 6 7777777 5 2 111 6 6 111 3 2 0 8 4 4444444444444444444 8 2 6 11 11 0 777777777 8 0 11111 11111111111111111111 3 2222 0 2 3 99999 3 7 4 44 000 6666 8888 6 555 0000000 6 7 0 111 66 0 0 22222 888 6 111 9999999999999 111111 33333 6 66666 5 1 8 11 4 2 555 1 3 7 1 44 3 44 0 333 666666666666666666666666666666666666666666666666 1 11 44 1 1 5 6
lowQualScore : . . . . . ....... . . ... . . ... . . . . . ................... . . . .. .. . ......... . . ..... .................... . .... . . . ..... . . . .. ... .... .... . ... ....... . . . ... .. . . ..... ... . ... ............. ...... ..... . ..... . . . .. . . ... . . . . .. . .. . ... ................................................ . .. .. . . . .
lowQualScore : 0 0 0 0 0 0000000 5 5 000 0 0 000 0 5 8 0 6 4444444444444444444 0 2 0 00 88 8 000000000 0 0 33333 55555555555555555555 0 5555 0 5 0 00000 3 3 7 33 000 0000 0000 0 000 0000000 0 0 0 000 00 0 0 33333 000 7 777 2222222222222 555555 22222 7 00000 7 7 4 11 2 2 666 9 6 7 7 44 3 00 9 222 111111111111111111111111111111111111111111111111 3 77 33 8 9 8 3
consensus : NTAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTTGACACTTTCACCGTCGTCCTTAAATTTTGAT-TGTGCGANGAAA--AATGC----T-CTCCCCATC--AGAGGAAGACATGTT--NGTA---T-GAT-TCG-A---TGGTGAAAGCGAACG-ATATTGNAACGACTTTCAAGCTNCACAGAGTGCCCTTGANAANTTAACCTGAAACT-GTCCAATNAGT-GAA-CAAAAGAAACAG-CT-TCNCGCCAAGACCGGTTTTTATTGTTGGGGTATTTA-------AAACAGCTTTACCTGGCAGAGGACACTTATGAAGACAAT-GGATTATAGGAAACGATAACAATCA--TT-TAAT-CGGATT-ACC---TGA------TA---C-TATC-CGAT-AT-TAATACAA-AGG--A--ATA-ATGTTTTAAGTAGGATATAAGC-C--CAA-A-CTGTNCA-TTCCGTG-AGA-G--AAAGA---AC------TGATC-----T-NG-GCCC-TAC--G--C-------CTC--GATCAGTTCTTT--CTCT-CACGGAA-TGNACAGTTT-TCGGCTTATATCCTTTACTTAA
Reference ( gi|4 ) : TTAGGCTTAATATCATCATTCTCCTTCTTTGTA-CAAGTAAACATCACTGAG-A-CGTTATCGGCACTT-A-ATTTCCACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAA--AATGC----T-CTCTCCACC--AGAGGAACTCATGTT--TGTA---T-GAT-TCACACATTGGTGAAAGTGAATG-ATATTTAAATGATTTTCAAGTTTTATAGA----CCTT-AGAAATT-ACTGAAAACT-GTCCAATAAGT-AAA-C-AAAGAAACAG-CT-TCA---CAAGACTGGTTTTTATTGTCGGTG-ATTTACATTGTTAAACAGTTTTTCCTGG-AGAGGACACTTA--GAGACAATAAGATTATAGGAAAC-ATAA-AATCA--TT-TAAC-TGGATT-ACC---TGA------TA---C-TATC-CAAT-AT-TAATACAA-AGG--A--ATA-ATGTTTTAAGTAGGATAAAAGC-C--CAA-A-CTGTACA-TTCTGTA-AGA-G--AAAGA---AA------TGATC-----T-CG-GCCC-TAC--G--C-------CTC--GATCAGTTCTTT--CTCT-CACAGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
gi|5 : TAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AAC-TCACTGAGGA-CGTTATCGGTATTT-ACATTT-CACTCTCATCCCTAAATTTTGAT-TGCGTGAGG--A--AATAC----T-CTCTCCATCAGAGAGGAACTCATGTT--TGTA---T-GAT-TCA-A---TGGTGAAAGTGAATGAATATTGTAATGA-TTTCAAGTTTTATAGA----CCTT-AGAACTT-ACCTGAAACT-GTCCAATAAGTAAAA-CAAAAGAAACAG-CT-TCC---CAAGACTGGTTTTTATTGTTGGGGTATTTA-------AAACAGCTTTACCTGGCAGAGGACACTTATGAAGACAAT-GGATTATAGGAAACGATAA-AATCATTTT-TGAC-GGAGTT-ACC---TGA------TA---CTTATC-CAAT-AT-TAATACAA-AGG--AG-ATA-ATGTTTTAAGTAGGATAGAAGC-CG-AAA-A-CTGTACA-TTCTGTA-AGA-GA-AAAGA---AC------TGATC-----T-C--GCCC-TACGGG--C-------CTC--GATCAGT--CTT--CTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTAC
gi|12 : AATATCACTTAG-AACATTATCAGTATTTGA-ACTTTCATCGTCGTGCTTAAAGTTTGAT-TGAGC---AAAA--AATGTGATGT-CTCACCTTC--AGAGGAAGACACGTT--GATA---TGGAT-TTG-----TGGTAAAAACGAACGTATAT
gi|10 : ctatatccagCATCCTTGAATGTTGAT-TGTCCAATGAAAATAAT-C----TGCCCCTCATC--AGAGGACGATATGTTGATGTGGCCT-GGTATCATAGA-----GAGGGTGAATG-----TGAAACAACT-----GCTGCACAAAGTGCCCTTGATAAATTAAC--AAAATTAG--CAATTAGT-GAA-CAAAAGAAACAG-AT-Tatgta
gi|6 : tATCTTTAAATTTTGAC-TGTGCAATGAAA--ATTA-----T-CTTCCTATC--GGAGGAAGATATGTT--GATA---T-ttaa
gi|3 : gtaaaggatataagccgaaactgtccattcagggagagaaagaactgatcgaggcccgtacgggtttctctcgcagaatggccagtttgaggcttataccctacttaaaacattacatcttttgttcgatgaatggacaggctctgataaacccaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactATCCCTAA-TTTTAACGTGTGCAAGGAA-----TGA----T-CTCTCCATC--AGAGGAAGACATG-----GAA---T-GAT-tttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|8 : aaaggatataagctgacaaactgacattctgtgccgcgaaagaactgatcaaggcccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctAACT-GTCCAATGTGT-GAACC-AAAGAAGCAGACTGTCACGCCAAGACCGtttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|2 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaaAC-ATAACAATCA--TA-TAATACAGATT-ATTATATGA------TC---T-TATA-TGAT-AT---ATACAA-TAT--G--ATT-ATGT---AA--AGGATATAA-C-G--AAA-A-CTGTACA-TTCCGTG-AGA-G--AAcacgtttgttagtaacgcactgactttaaatcgagtcatatcaacatgtcttcctacgagtaattctattggacattcaaacttttgggatgctaatagcactgctttgaacactgacactgtcttaagtgatgtggagtgcgagaaacctttggaacctaactttgatgtgaaaa
gi|7 : cagtcATAA--TTGTAAT-TGGATTTACC---TGAGTCAGTTAAATT-TATC-C-----T-TAGAACAA-AGG--AT-GTA-ATAGTTAAAGTAGGATATTATC-CT-CAA-A-ATGTCCA-TTcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|6 : GGTTT-ATC---AGA------GC---C-TGTC-CATTCAT-CGA-ACAA-AAG--AT-GTA-ATGTTTTAAGTAGGGTATAAGC-CT-CAA-A-CTGGCCA-TTCTGCG-AGA-G--AAA-----------------C-----C-CG------TAC--GGGC-------CTC--GATCAGTTCTTT--CTCT-CCCTGAA-TGGACAG-TT-TCGGCTTATATCCTTTACgatcatcatgaataaagctcattccatatgtatacaaagtagcccgacaatgtaaccagtaaagtctgggttttttctattctgattgaacagtgttagtcgtaaaaagtatcttgtgctgcaggtgttttactatcaatttcattagacaacctaactttaagtattttcatgaaagtaaagtgttgtgaataccgtcact
gi|1 : ATT-ATA---TGA------TA-----TATTATGAT-AT---ATACAATATG--A--ATCTATGT---AA--AGGATATAAGC-C--GAA-AACTGTACA-TTCCGTG-AGA-G---AAGA---AC------TGcaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactatatcaacatatcttcctccgataggaagataattttcattgcacagtcaaaatttaaagattttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|13 : TT-ACT---TGT------GA---C-TGTC-CATT-ATGTAA-ACAA-TGGCGACTACA-AT---TTAAGTGGGAGAAAAGC-CT-CAA-A-CTGTCCA---CAGTA-TTT-G--AAAAA---A-------------------------C-TA----------------T--GATAAGTTCTTT--CTCT-TGGGGAA-TGGCAAGTTT-TTGGTCTCTTTCTTTTACatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|15 : gt--A--AGA-ACATTTTAAGTCGGCTATA-GCAC--TCA-A-CAGTTTA-TTCCATA-TGA-A--AAAGA---AC------TGATC-----T-CG-GGTC-CA----------------C--AA------CTTC--CTCT-CAGAGAA-TGGCGAGTTT-TCAGa
gi|21 : TTAA--AGGATATAAGC-CGATAA-A-CTGTACATTTCCGTG-AGA-G--AAAtccctca
gi|9 : tTAAG--GGACATCAGC-C--AAA-AACTGTCTA-TTCCATG-AGA-G-------------------GCTCA----T-AG-GGCC-TAC-------------------ATTAGTGTTTT--CTCT-CACAGttaatca
gi|5 : atgAGGATATAA-C-G--AAA-A-CTGTACA-TTCCGTG-AGA-G--AAG-----AC------TGATC-----G-AG-GCCCGTAG--G--G-------CGA--GATCAGTTCTTTT-CTCT-TACAGAA-TGTACAGTTT-TCGGCTTCTATCC--TACTTAAtttgaggctactcttgacaggttcaggtaaacccaatgacaatgatgcatatgaatatacaaagtggccagacactgtagtagagatatgcttcctatgatgaccatctgaacagtgttaagttaacaagggtatcttgtactgcaagtttttatatggtactgaatcacaatatatct
gi|6 : taggcttcatatcagcattatccttctctatatcaagaactcactgaggacgttatcggtatttacatttcactctcatccctaaattttgattgcgtgaggaaatactctctccatcagagaggaactcatgtttgtatgattcaatggtgaaagtgaatgaatattgtaatgatttcaagttttatagaccttagaacttacctgaaactgtccaataagtaaaacaaaagaaacagcttcccaagactggtttttattgttggggtatttaaaacagctttacctggcagaggacacttatgaagacaatggattataggaaacgataaaatcatttttgacggagttacctgatacttatccaatattaatacaaaggagataatgttAGGATATAAGC-C--GAA-A-CTGTCCA-TTCAGGG-AGA-G--AAAGA---AC------TGATC-----G-AG-GCCCGTAC--G---------------GG-------TTT--CTCT-CGCAGAA-TGGCCAGTTT-GAGGCTTATACCC--TACTTAAttac
gi|14 : gtaaAGGATATAAGC-TGACAA-A-CTGTACA-TTCTGTG-AGA-G--AAAGA---AC------TGATC-----A-AG-GCCC-TAaacattacatcttttgttcgatgaatggacaggctctgataaacccaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactatatcaacatatcttcctccgataggaagataattttcattgcacagtcaaaatttaaagattttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|17 : tatcattgtcattgggtttacctgcgcctgcccattcttagaacaaaagacacaataAGGATATCAGC-C--AAA-A-------A---CTGTA-AGA-G--AAAGA---AT------TGTTCAAGCAT-CG------TAG--G--C-------C-CAAGATTAGTTATTT--CTCT-CACATAA-TGGCCAATTT-ttat
gi|20 : gataaAGGATAGAAGC-CT-CAA-A-CTGTACA-TTCTGTT-AGA-G--AAAGA---AC------TGATC-----T-CG-GCCgaggc
gi|18 : AAGATATAAGC-CG-CAA-T-CTGTCAA-TTCTGTG-AGA-G--AAATT---A-------TGATC--------GAGCCC-CATT-G--T-------GTAA-GATTAGTTCTTT--CTCT-CATAGAA-TG
gi|3 : AGGATATAAGC-TGACAA-A-CTG-ACA-TTCTGTGCCGC-G--AAAGA---AC------TGATC-----A-AG-GCCC-t
gi|19 : aaGGGTATAAGC-C--AAAAA-CTGTTCA-TTTTGTG-AGA-G--AAGAA---AC------TGATC-----G-AG-GCCC-gtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctatcattccatgtcttcctctgatggagagatcattccttgcacacgttaaaattagggattttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|17 : tGC-CT-CAA-A-TTGGCCA-TTATGTG-AGA-G--AAATA---AC------TAATC-----T-TG-GGCC-TAC--GATG-------CTT--GAACAATTCTTT--CTCT-----------TACAGTTT-TTGGCTGATATCCTTTAatcacg
gi|16 : ga--CAA-G-CTGTTCA-TTCTGTG-AGA-GAAAAAGA---AATACTAGTAATC-----T-CG-GTCT-TA--------------CT---------TTTTCT--CTCT-CAGAGAA-TG-ACAGTTT-TCAGCTAATGTCCTTTATT
gi|16 : caAA-A-CTGT-CA-TTCTCTG-AGA-G--AGAAA---AAG-----TAAGA-----C-CG-AGAT-TAC--------------TA--G--TATTTCTTTTTCTCT-CACAGAA-TGAACAGCTT-
gi|15 : cacAA-A-CTCGCCA-TTCTCTG-AGA-G--GAAGT---TG------TG-----------G-ACCC-GA-------------------GATCAGTTCTTT--TTCA-TATGGAA-TAAACTGTTtcagctaatgtcctttatt
gi|14 : aagaacattttaagtcggctatagcactc-CTGCCCA-TTCT-TA-GAACA--AAAGA---CA------CAATA-----T-AG-G---------G--C-------CTT--GATCAGTTCTTT--CTCT-CACAGAA-TGTACAGTTTGTCAGCTTATATCCTTTAtcagtccctca
gi|18 : tatcattgtcattgggtttacctgcgcCA-TTCTATG-AGA-G--AAAGA---AC------TAATC-----T---------TAC--A--CAATGGGGCTC--GATCA-TAATTT--CTCT-CACAGAA-TTGACAGATT-GCGGCTTATATCTTTt
gi|3 : CA-TTCTTTA-GAACA--AAAGACACAA------T-ATT-----TACG-G---------G--C-------CTT--GATCAGTTCTTT--CGCGGCACAGAA-TGT-CAGTTTGTCAGCTTATATCCTTT
gi|9 : CTGTG-AGA-G--AAAAC---AC------TAATG-----T-AG-GCCC-TAT--G-------------------AGC-------CTCT-CATGGAA-TAGACAGTTT-TTGGCTGATGTCCCTTACgcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctatcattccatgtcttcctctgatggagagatcattccttgcacacgttaaaattagggattttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|19 : at--G--C-------CTC--GATCAGTTTCTT--CTCT-CACAAAA-TGAACAGTTT-TTGGCTTATACCCATCACtttgaggctactcttgacaggttcaggtaaacccaatgacaatgatgcatatgaatatacaaagtggccagacactgtagtagagatatgcttcctatgatgaccatctgaacagtgttaagttaacaagggtatcttgtactgcaagtttttatatggtactgaatcacaatatatct
gi|20 : tgg--GATCAGTTCTTT--CTCT-AACAGAA-TGTACAGTTT-GAGGCTTCTATCCTg
gi|1 : CAGTTCTT---CTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACATAtcggcc
gi|2 : CAGTC--TT--CTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTACATAAgattcatattgtatatatcataatatatcatataatatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|21 : TTT--CTCT-CACGGAAATGTACAGTTTATCGGCTTATATCCTTTAATTAAtcatattgtatatatcatataagatcatataataatctgtattatatgattgttatgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TGTCAGGAATTGATACATTCATATTTTCGCACGTGAGTGGAGGTTTCTTCCAGAAAACTTCTAATCCGGGGGACCGAAGAACGACTGAGGATTGGAGACTGAAGTATTTTATCTCAACGCTACTGAGTTTGTATTCATTGTGGAAGGTTT
Alignments
lowQualScore : 11 222 4444444 22222222222222 66666666666666666666666 33333333333333333333333333333 222 111 3333333333333 1 33333 1 6666666 1 11 2 1 11 1 11 111 2222222222222 1111 11111111 22 2 11111 33333333333333333333333
lowQualScore : 2 2 3 7 88 3 1 777 0000000 88 2 5 1 77 99999999999999 0 77 3 5 22222222222222222222222 4 44444444444444444444444444444 000 111 4 0000000000000 0 1 8 0 6 8 99999 1 5 5555555 4 5 88 0 6 9 33 0 77 5 5 000 9999999999999 3333 66666666 5 66 11 5 0 6 0 2 2 3 3 3 4 6 77 1 00000 555 1 1 66666666666666666666666 2 1 33 2 0 2 3 8 1
lowQualScore : . . . . .. . . ... ....... .. . . . .. .............. . .. . . ....................... . ............................. ... ... . ............. . . . . . . ..... . . ....... . . .. . . . .. . .. . . ... ............. .... ........ . .. .. . . . . . . . . . . . .. . ..... ... . . ....................... . . .. . . . . . .
lowQualScore : 5 5 0 3 33 2 0 555 0000000 55 8 7 4 33 77777777777777 4 99 0 7 77777777777777777777777 8 88888888888888888888888888888 222 888 5 4444444444444 8 0 0 8 0 0 55555 0 5 0000000 0 0 00 0 7 0 88 0 00 7 7 000 6666666666666 0000 99999999 7 99 99 0 2 2 2 5 1 6 3 1 0 3 33 4 88888 444 9 4 11111111111111111111111 3 2 99 7 8 7 6 0 4
consensus : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTTAA--CA-TTCCACTNTCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATCAGAG--GAAGACATGTTGGTAT-GAT----TCG-----AT--------GGTGAAAGTGAACG-A-TAT-TGAAACGACTTTCAAGCTGCACAAAATGCCCTTGAGAAATTAACCTGAAA-CT-GTCCAATNAGTGAA-CAAAAGAAACAGACT-TCAC-CCAAGACCGGTTTTTATTGTCGGGGTATTTACATTGTTAAACAGCTTTNCCTGGCAGAGGACACTTATGGAGACAATGAGATTATAGGAAACGATAACAATCA--TT-TAAT-CGGA-TT-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAA-CTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCC-TAC--G--C-------CTCGATCAGTTCTTTCTC-TCACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
Reference ( family-1368 ) : NTAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTTGA--CACTTTCACCGTCGTCCTTAAATTTTGAT-TGTGCGANGAAAA--ATGC----T-CTCCCCATCAGAG--GAAGACATGTTNGTAT-GAT----TCG-----AT--------GGTGAAAGCGAACG-A-TAT-TGNAACGACTTTCAAGCTNCACAGAGTGCCCTTGANAANTTAACCTGAAA-CT-GTCCAATNAGTGAA-CAAAAGAAACAG-CT-TCNCGCCAAGACCGGTTTTTATTGTTGGGGTATTTA-------AAACAGCTTTACCTGGCAGAGGACACTTATGAAGACAATG-GATTATAGGAAACGATAACAATCA--TT-TAAT-CGGA-TT-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATATAAGC-C-CAAA-CTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTNGGCCC-TAC--G--C-------CTCGATCAGTTCTTTCTC-TCACGGAA-TGNACAGTTT-TCGGCTTATATCCTTTACTTAA
gi|1 : CAGTTCTT-CTC-TCACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACATA
gi|1 : A-TT-ATA---TGA------TA-----TATTATGATAT---AT---ACAATATG--A--ATCTATGT---AA--AGGATATAAGC-C-GAAAACTGTACATTCCGTGAGAG---AAGA-----AC---TGgattcatattgtatatatcataatatatcatataatatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|10 : CATCCTTGAATGTTGAT-TGTCCAATGAAAATAAT-C----TGCCCCTCATCAGAG--GACGATATGTTGATGT-GGC----CTGGTATCAT--------AGAGAGGGTGAATG-------TGAAACAACT-----GCTGCACAAAGTGCCCTTGATAAATTAAC--AAAA-TTAG--CAATTAGTGAA-CAAAAGAAACAG-AT-Tatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|12 : tCTATATCCAG--AATATCACTTAG-AACATTATCAGTATTTGA---ACTTTCATCGTCGTGCTTAAAGTTTGAT-TGAGCAA---AAA--ATGTGATGT-CTCACCTTCAGAG--GAAGACACGTTGATATGGAT----TTG------T--------GGTAAAAACGAACGTA-TATATGTAttaa
gi|13 : -TT-ACT---TGT------GA---C-TGTC-CATTATGTAA----ACAA-TGGCGACTACA-AT---TTAAGTGGGAGAAAAGC-CTCAAA-CTGTCCA--CAGTATTTG--AAAAA-----AC---T-AT----------------------------GATAAGTTCTTTCTC-TTGGGGAA-TGGCAAGTTT-TTGGTCTCTTTCTTTTAC
gi|14 : gt-CTGCCCATTC--TTAGAACAAAAGAC----AC----AATATAGG---------G--C-------CTTGATCAGTTCTTTCTC-TCACAGAA-TGTACAGTTTGTCAGCTTATATCCTTTAa
gi|15 : tatcattgtcattgggtttacctgcgc--A--AGA-ACATTTTAAGTCGGCTATA-GCAC-TCAA-CAGTTTATTCCATATGAA--AAAGA-----AC---TGATCTCGGGTC-CA----------------CAA------CTTCCTC-TCAGAGAA-TGGCGAGTTT-TCAGt
gi|16 : -CAAG-CTGTTCATTCTGTGAGAG--AAAAAGAAATACTAGTAATCTCGGTCT-TA--------------CT-------TTTTCTCTC-TCAGAGAA-TG-ACAGTTT-TCAGCTAATGTCCTTTATTtccctca
gi|17 : caGC-CTCAAA-TTGGCCATTATGTGAGAG--AAATA-----AC---TAATCTTGGGCC-TAC--GATG-------CTTGAACAATTCTTTCTC-T----------TACAGTTT-TTGGCTGATATCCTTTA
gi|18 : gaCATTCTATGAGAG--AAAGA-----AC---TAATCT-------TAC--A--CAATGGGGCTCGATCA-TAATTTCTC-TCACAGAA-TTGACAGATT-GCGGCTTATATCTTT
gi|19 : --G--C-------CTCGATCAGTTTCTTCTC-TCACAAAA-TGAACAGTTT-TTGGCTTATACCCATCAC
gi|2 : tggCAGTC--TTCTC-TCACGGAA-TGTACAGTTT-TCG--TTATATCCTTTACATAAg
gi|2 : ATAACAATCA--TA-TAATACAGA-TT-ATTATATGA------TC---T-TATA-TGATAT---AT---ACAA-TAT--G--ATT-ATGT---AA--AGGATATAA-C-G-AAAA-CTGTACATTCCGTGAGAG--AA--G-----AC---TGtcatattgtatatatcatataagatcatataataatctgtattatatgattgttatgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|20 : AGGATAGAAGC-CTCAAA-CTGTACATTCTGTTAGAG--AAAGA-----AC---TGATCTCGGCCgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|21 : TTTCTC-TCACGGAAATGTACAGTTTATCGGCTTATATCCTTTAATTAA
gi|3 : t--G--C-------CTTGATCAGTTCTTTCGCGGCACAGAA-TGT-CAGTTTGTCAGCTTATATCCTTTtca
gi|3 : TCCCTAA-TTTTAACGTGTGCAAGGAA-----TGA----T-CTCTCCATCAGAG--GAAGACATG---GAAT-GATAGACTCC-----GTTTACCAGGAGTGAAATGGA----A-TAG-GGAAAACACT-----GC-GCACAAAATGCCCTTGA----TT-----------C-GTTCAGTTAGTGAA-CAAAAGAAACAGACA-TCT-------ACCAGTTTACATTGTCAGGccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctatcattccatgtcttcctctgatggagagatcattccttgcacacgttaaaattagggattttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|4 : aaaggatataagctgacaaactgacattctgtgccgcgaaagaactgatcaaggcccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgTAGGCTTAATATCATCATTCTCCTTCTTTGTA-CAAGTAAACATCACTGAG--ACGTTATCGGCACTTAA--T--TTCCACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAAA--ATGC----T-CTCTCCACCAGAG--GAACTCATGTTTGTAT-GAT----TCACAC--ATT-------GGTGAAAGTGAATG-A-TAT-TTAAATGATTTTCAAGTTTTATAGA----CCTT-AGAAATTA--CTGAAAACT-GTCCAATAAGTAAA-CAAA-GAAACAG-CT-TCAC---AAGACTGGTTTTTATTGTCGGTG-ATTTACATTGTTAAACAGTTTTTCCTGG-AGAGGACACTTA--GAGACAATAAGATTATAGGAAAC-ATAA-AATCA--TT-TAAC-TGGA-TT-ACC---TGA------TA---C-TATC-CAATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATAAAAGC-C-CAAA-CTGTACATTCTGTAAGAG--AAAGA-----AA---TGATCTCGGCCC-TAC--G--C-------CTCGATCAGTTCTTTCTC-TCACAGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAAttttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|5 : tTAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AAC-TCACTGAGGA-CGTTATCGGTATTT-A--CA-TTTCACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAA----TAC----T-CTCTCCATCAGAGAGGAACTCATGTTTGTAT-GAT----TCA-----AT--------GGTGAAAGTGAATG-AATAT-TGTAATGA-TTTCAAGTTTTATAGA----CCTT-AGAACTTA-CCTGAAA-CT-GTCCAATAAGTAAAACAAAAGAAACAG-CT-TC---CCAAGACTGGTTTTTATTGTTGGGGTATTTA-------AAACAGCTTTACCTGGCAGAGGACACTTATGAAGACAATG-GATTATAGGAAACGATAA-AATCATTTT-TGA--CGGAGTT-ACC---TGA------TA---CTTATC-CAATAT-TAAT---ACAA-AGG--AG-ATA-ATGTTTTAAGTAGGATAGAAGC-CGAAAA-CTGTACATTCTGTAAGAGA-AAAGA-----AC---TGATCTC-GCCC-TACGGG--C-------CTCGATCAGT--CTTCTC-TCACGGAA-TGTACAGTTT-TCG--TTATATCCTTTAC
gi|6 : GGT-TT-ATC---AGA------GC---C-TGTC-C---AT-TCATCGAACAA-AAG--AT-GTA-ATGTTTTAAGTAGGGTATAAGC-CTCAAA-CTGGCCATTCTGCGAGAG--AAA---------------------CCCGTAC--GGGC-------CTCGATCAGTTCTTTCTC-TCCCTGAA-TGGACAG-TT-TCGGCTTATATCCTTTAC
gi|6 : TCTTTAAATTTTGAC-TGTGCAATGAAAA--TTA-----T-CTTCCTATCGGAG--GAAGATATGTTGATAT-AGT------G-----A----------GTGAATATAAGC------T-T-AAAC-ACCTGCA----GCGCAAAATACCCTTGAcaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactatatcaacatatcttcctccgataggaagataattttcattgcacagtcaaaatttaaagattttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|7 : gtaaaggatataagccgaaactgtccattcagggagagaaagaactgatcgaggcccgtacgggtttctctcgcagaatggccagtttgaggcttataccctacttaaaacattacatcttttgttcgatgaatggacaggctctgataaacccaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagATGATGATCATAA--TTGTAAT-TGGA-TTTACC---TGAGTCAGTTAAATT-TATC-C----T-TAGA---ACAA-AGG--AT-GTA-ATAGTTAAAGTAGGATATTATC-CTCAAA-ATGTCCATTttttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|8 : AACGTGAA--CT-GTCCAATGTGTGAA-CCAAAGAAGCAGACTGTCACGCCAAGACCGgaataaagctcattccatatgtatacaaagtagcccgacaatgtaaccagtaaagtctgggttttttctattctgattgaacagtgttagtcgtaaaaagtatcttgtgctgcaggtgttttactatcaatttcattagacaacctaactttaagtattttcatgaaagtaaagtgttgtgaataccgtcact
gi|8 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaaACATCACTTAAGA-CAGTGTCAGTGTTCAAAGCAGTGCTATTAGCATCCCAAAAGTTTGAA-TGTCCAAT--AGA--AT---------TACTCGT---AG--GAAGACATGTTGATAT-GAC----TCG-----AT----------TTAAAGtgttagtaacgcactgactttaaatcgagtcatatcaacatgtcttcctacgagtaattctattggacattcaaacttttgggatgctaatagcactgctttgaacactgacactgtcttaagtgatgtggagtgcgagaaacctttggaacctaactttgatgtgaaaa
gi|9 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaacggtcttggcgtgacagtctgcttctttggttcacacattggacagttcacgtttgttagtaacgcactgaAGC-CTCAAA-CTGT---------GAGAG--AAAAC-----AC---TAATGTAGGCCC-TAT--G-----------------AGC-----CTC-TCATGGAA-TAGACAGTTT-TTGGCTGATGTCCCTTACggagtgcgagaaacctttggaacctaactttgatgtgaaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTCAGGAATTGATACATTCATATTTTCGCACGTGAGTGGAGGTTTCTTCCAGAAAACTTCTAATCCGGGGGACCGAAGAACGACTGAGGATTGGAGACTGAAGTATTTTATCTCAACGCTACTGAGTTTGTATTCATTGTGGAAGGTTT
Alignments
lowQualScore : 11 222 2222222 111 22222222 5555555555555555 333333333333333333333333333 111 3333333333333333333 33333333 5555555555555555555555555 1 11 1 11 11 111 2222222222222 1111 11111111 22 11111 3333333333333333333333
lowQualScore : 1 1 1 7 88 3 1 777 7777777 77 0 44 5 2 1 222 0 77 77777777 0 77 77 1 5 0 4444444444444444 2 999999999999999999999999999 222 9999999999999999999 6 1 6 99 7 6 11111111 1 88 7 4444444444444444444444444 7 6 7 3 88 8888 9 2 33 3 77 5 5 000 9999999999999 3333 66666666 5 66 11 5 0 6 0 2 1 3 2 4 6 77 1 00000 555 1 4444444444444444444444 2 1 33 2 0 2 4 8 1
lowQualScore : . . . . .. . . ... ....... .. . .. . . . ... . .. ........ . .. .. . . . ................ . ........................... ... ................... . . . .. . . ........ . .. . ......................... . . . . .. .... . . .. . .. . . ... ............. .... ........ . .. .. . . . . . . . . . . .. . ..... ... . ...................... . . .. . . . . . .
lowQualScore : 0 0 0 3 33 2 0 555 5555555 33 7 77 7 7 4 111 1 99 77777777 4 99 99 4 7 1 1111111111111111 2 444444444444444444444444444 555 3333333333333333333 7 0 7 22 3 7 22222222 4 22 3 3333333333333333333333333 3 7 3 3 33 3333 0 5 88 5 00 7 7 000 6666666666666 0000 99999999 7 99 99 0 2 2 2 5 0 6 0 0 3 33 4 88888 444 9 9999999999999999999999 3 2 99 7 8 7 0 0 4
consensus : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATT-TCATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----AT--------GGTGAAAGTGAA--CG-ATATTGAAACGACTT-CA-GCTGCACAAAATGCCCTTGA-GAAATTAAC-TGAAA-CT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTTTATTGTCGGGGTATTTA---TGT-AAACAGCTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGATT-AT--AGGAAACGATAACAATCA--TNTAAT-CGGA-TT-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
Reference ( family-1368 ) : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATT-CCACTNTCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGGTAT-GATTCG-----AT--------GGTGAAAGTGAA--CG-ATATTGAAACGACTTTCAAGCTGCACAAAATGCCCTTGA-GAAATTAACCTGAAA-CT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTTTATTGTCGGGGTATTTACATTGTTAAACAGCTTTNCCTGGCAGAGGACACTTATGGAGACAATGAGATT-AT--AGGAAACGATAACAATCA--TTTAAT-CGGA-TT-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
gi|1 : CAGTTCTT-CTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACATA
gi|1 : A-TT-ATA---TGA------TA-----TATTATGATAT---AT---ACAATATG--A--ATCTATGT---AA--AGGATATAAGC-CGAAAACTGTACATTCCGTGAGAG---AAGA-----AC---TGgattcatattgtatatatcataatatatcatataatatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|10 : CATCCTTGAATGTTGAT-TGTCCAATGAAAATAAT-C----TGCCCCTCATC--AGAGGACGATATGT--TGATGT-GGCCTGGTATCAT--------AGAGAGGGTGAA--TG-----TGAAACAACT-----GCTGCACAAAGTGCCCTTGA-TAAATTAAC--AAAA-TTAG--CAATTAGT-GAACAAAAGAAAC--AGATT-atatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|12 : tCTATATCCAG--AATATCACTTAG-AACATTATCAGTATTTGAA--C-TT-TCATCGTCGTGCTTAAAGTTTGAT-TGAGCAA---AAA--ATGTGATGT-CTCACCTTC--AGAGGAAGACACGT--TGATATGGATTTG------T--------GGTAAAAACGAA--CGTATATttaa
gi|13 : -TT-ACT---TGT------GA---C-TGTC-CATTATGTAA----ACAA-TGGCGACTACA-AT---TTAAGTGGGAGAAAAGC-CTCAAACTGTCCA--CAGTATTTG--AAAAA-----AC---T-AT---------------------------GATAAGTTCTTTCTCT-TGGGGAA-TGGCAAGTTT-TTGGTCTCTTTCTTTTACatgta
gi|14 : gtCTGCCCATTC--TTAGAACAAAAGAC----AC----AATATAGG--------G--C-------CTTGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTTGTCAGCTTATATCCTTTAa
gi|15 : tatcattgtcattgggtttacctgcgc--A--AGA-ACATTTTAAGTCGGCTATA-GCACTCAA-CAGTTTATTCCATATGAA--AAAGA-----AC---TGATCTCGGGTCCA----------------CAA------CTTCCTCT-CAGAGAA-TGGCGAGTTT-TCAGt
gi|16 : CAAGCTGTTCATTCTGTGAGAG--AAAAAGAAATACTAGTAATCTCGGTCTTA--------------CT-------TTTTCTCTCT-CAGAGAA-TG-ACAGTTT-TCAGCTAATGTCCTTTATTtccctca
gi|17 : caGC-CTCAAATTGGCCATTATGTGAGAG--AAATA-----AC---TAATCTTGGGCCTAC--GATG-------CTTGAACAATTCTTTCTCT-----------TACAGTTT-TTGGCTGATATCCTTTA
gi|18 : gaCATTCTATGAGAG--AAAGA-----AC---TAATCT------TAC--A--CAATGGGGCTCGATCA-TAATTTCTCT-CACAGAA-TTGACAGATT-GCGGCTTATATCTTT
gi|19 : --G--C-------CTCGATCAGTTTCTTCTCT-CACAAAA-TGAACAGTTT-TTGGCTTATACCCATCAC
gi|2 : tggCAGTC--TTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTACATAAg
gi|2 : ATAACAATCA--TATAATACAGA-TT-ATTATATGA------TC---T-TATA-TGATAT---AT---ACAA-TAT--G--ATT-ATGT---AA--AGGATATAA---CGAAAACTGTACATTCCGTGAGAG--AA--G-----AC---TGtcatattgtatatatcatataagatcatataataatctgtattatatgattgttatgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|20 : AGGATAGAAGC-CTCAAACTGTACATTCTGTTAGAG--AAAGA-----AC---TGATCTCGGCCgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|21 : TTTCTCT-CACGGAAATGTACAGTTTATCGGCTTATATCCTTTAATTAA
gi|3 : t--G--C-------CTTGATCAGTTCTTTCGCGGCACAGAA-TGT-CAGTTTGTCAGCTTATATCCTTTtca
gi|3 : TT-TCATTAAAATCCCTAA-TTTTAACGTGTGCAAGGAA-----TGA----T-CTCTCCATC--AGAGGAAGACATGGAATGATA--GACTCC-----GTTTACCAGGAGTGAAA-TGGA-----ATAGGGAAAACACT-----GC-GCACAAAATGCCCTTG-----ATT-----------C-GTTCAGTTAGT-GAACAAAAGAAAC--AGACA-TC-------TACCAGTTTACATTGTCAGGccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctatcattccatgtcttcctctgatggagagatcattccttgcacacgttaaaattagggattttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|4 : aaaggatataagctgacaaactgacattctgtgccgcgaaagaactgatcaaggcccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgTAGGCTTAATATCATCATTCTCCTTCTTTGTA-CAAGTAAACATCACTGAG--ACGTTATCGGCACTT-AA--T-TT-CCACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAAA--ATGC----T-CTCTCCACC--AGAGGAACTCATGT--TTGTAT-GATTCACAC--ATT-------GGTGAAAGTGAA--TG-ATATTTAAATGATTTTCAAGTTTTATAGA----CCTT-A-GAAATTA--CTGAAAACT-GTCCAATAAGT-AAACAAA-GAAAC--AG-CT-TCAC---AAGACTGGTTTTTATTGTCGGTG-ATTTACATTGTTAAACAGTTTTTCCTGG-AGAGGACACTTA--GAGACAATAAGATT-AT--AGGAAAC-ATAA-AATCA--TTTAAC-TGGA-TT-ACC---TGA------TA---C-TATC-CAATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATAAAAGC-C-CAAACTGTACATTCTGTAAGAG--AAAGA-----AA---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAActagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|5 : tTAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AAC-TCACTGAGGA-CGTTATCGGTATTT-A---CATT-TCACTCTCATCCCTAAATTTTGAT-TGCGTGAGG--AA--ATAC----T-CTCTCCATCAGAGAGGAACTCATGT--TTGTAT-GATTCA-----AT--------GGTGAAAGTGAA--TGAATATTGTAATGA-TTTCAAGTTTTATAGA----CCTT-A-GAACTT-ACCTGAAA-CT-GTCCAATAAGTAAAACAAAAGAAAC--AG-CT-T--C-CCAAGACTGGTTTTTATTGTTGGGGTATTTA-------AAACAGCTTTACCTGGCAGAGGACACTTATGAAGACAATG-GATT-AT--AGGAAACGATAA-AATCATTTTTGA--CGGAGTT-ACC---TGA------TA---CTTATC-CAATAT-TAAT---ACAA-AGG--AG-ATA-ATGTTTTAAGTAGGATAGAAGC-CGAAAACTGTACATTCTGTAAGAGA-AAAGA-----AC---TGATCTC-GCCCTACGGG--C-------CTCGATCAGT--CTTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTAC
gi|6 : GGT-TT-ATC---AGA------GC---C-TGTC-C---AT-TCATCGAACAA-AAG--AT-GTA-ATGTTTTAAGTAGGGTATAAGC-CTCAAACTGGCCATTCTGCGAGAG--AAA----------------CCCG----TAC--GGGC-------CTCGATCAGTTCTTTCTCT-CCCTGAA-TGGACAG-TT-TCGGCTTATATCCTTTAC
gi|6 : TT-TCATTAAAATCTTTAAATTTTGAC-TGTGCAATGAAAA--TTA-----T-CTTCCTATC--GGAGGAAGATATGT--TGATAT-AGT--G-----A----------GTGAATATAAG--C-----TT-AAAC-ACCTGCA----GCGCAAAATACCCTTGA-caatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactatatcaacatatcttcctccgataggaagataattttcattgcacagtcaaaatttaaagattttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|7 : gtaaaggatataagccgaaactgtccattcagggagagaaagaactgatcgaggcccgtacgggtttctctcgcagaatggccagtttgaggcttataccctacttaaaacattacatcttttgttcgatgaatggacaggctctgataaacccaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagAATGAAATTG-ATAGTAAAAC-ACCTGCA----GCACAAGATACTTTTTACGA--CTAAC-----A-CT-GTTCAATCAG---AATAGAAAAAACCCAGACT-TTAC-T-------GGTTAC-ATTGTCGGGCTACTT----TGT-----------------------ATACATATGGA----ATGAGCTTTATTCATGA--TGATCATAAT----TGTAAT-TGGA-TTTACC---TGAGTCAGTTAAATT-TATC-C----T-TAGA---ACAA-AGG--AT-GTA-ATAGTTAAAGTAGGATATTATC-CTCAAAATGTCCATTctatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|8 : AACGTGAA--CT-GTCCAATGTGT-GAACCAAAGAAGC--AGACTGTCACGCCAAGACCGagacaacctaactttaagtattttcatgaaagtaaagtgttgtgaataccgtcact
gi|8 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaaACATCACTTAAGA-CAGTGTCAGTGTTC-AAAGCAGTGCTATTAGCATCCCAAAAGTTTGAA-TGTCCAAT--AGA--AT---------TACTCGT-----AGGAAGACATGT--TGATAT-GACTCG-----AT----------TTAAAGTtgttagtaacgcactgactttaaatcgagtcatatcaacatgtcttcctacgagtaattctattggacattcaaacttttgggatgctaatagcactgctttgaacactgacactgtcttaagtgatgtggagtgcgagaaacctttggaacctaactttgatgtgaaaa
gi|9 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaacggtcttggcgtgacagtctgcttctttggttcacacattggacagttcacgtttgttagtaacgcactgAGC-CTCAAACTGT---------GAGAG--AAAAC-----AC---TAATGTAGGCCCTAT--G-----------------AGC-----CTCT-CATGGAA-TAGACAGTTT-TTGGCTGATGTCCCTTACggagtgcgagaaacctttggaacctaactttgatgtgaaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTCAGGAATTGATACATTCATATTTTCGCACGTGAGTGGAGGTTTCTTCCAGAAAACTTCTAATCCGGGGGACCGAAGAACGACTGAGGATTGGAGACTGAAGTATTTTATCTCAACGCTACTGAGTTTGTATTCATTGTGGAAGGTTT
Alignments
lowQualScore : 11 222 2222222 111 22222222 44444444444444444 22222 111 1 44444 111 2222222222222 33333333 5555555555555555555555555 1 11 1 11111 11 111111 111 2222222222222 1111 11111111 22 11111 3333333333333333333333
lowQualScore : 1 1 1 7 88 3 1 777 7777777 6 1 5 2 1 222 0 77 77777777 0 77 77 777 0 77777777777777777 0 88888 111 1 3 77777 7 222 7777777777777 6 6 1 6 99 7 6 11111111 1 88 7 1111111111111111111111111 7 6 7 3 88 3 6 3 8 22222 1 6 22 5 444444 000 9999999999999 3333 66666666 5 66 11 5 0 6 0 2 1 3 2 4 6 77 1 00000 555 1 4444444444444444444444 2 1 33 2 0 2 4 8 1
lowQualScore : . . . . .. . . ... ....... . . . . . ... . .. ........ . .. .. ... . ................. . ..... ... . . ..... . ... ............. . . . . .. . . ........ . .. . ......................... . . . . .. . . . . ..... . . .. . ...... ... ............. .... ........ . .. .. . . . . . . . . . . .. . ..... ... . ...................... . . .. . . . . . .
lowQualScore : 0 0 0 3 33 2 0 555 5555555 7 0 7 7 4 111 1 99 77777777 4 99 99 333 4 66666666666666666 2 66666 333 0 5 88888 8 555 8888888888888 7 7 0 7 22 3 7 22222222 4 22 3 0000000000000000000000000 3 7 3 3 33 2 5 2 0 22222 0 7 77 7 666666 000 6666666666666 0000 99999999 7 99 99 0 2 2 2 5 0 6 0 0 3 33 4 88888 444 9 9999999999999999999999 3 2 99 7 8 7 0 0 4
consensus : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----AT--------GGTGAAAGTGAA--TG-ATA--TTGAAACGACTT----GCTGCACAAAATGCCCTTGAGAAATTAACTGAAA-CT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTTTATTGTCGGGGTATTTA---TGT-AAACAGCTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGATT-AT--AGGAAACGATAACAA-T-CA--TNTA-AT-CGGA-T----T-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
Reference ( family-1368 ) : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----AT--------GGTGAAAGTGAA--CG-ATA--TTGAAACGACTTC--AGCTGCACAAAATGCCCTTGAGAAATTAACTGAAA-CT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTTTATTGTCGGGGTATTTA---TGT-AAACAGCTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGATT-AT--AGGAAACGATAACAA-T-CA--TNTA-AT-CGGA-T----T-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
gi|1 : CAGTTCTT-CTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACATA
gi|1 : AACAGTAACAAATACA--TATATAA-CAGA-TATATT-ATA---TGA------TA-----TATTATGATAT---AT---ACAATATG--A--ATCTATGT---AA--AGGATATAAGC-CGAAAACTGTACATTCCGTGAGAG---AAGA-----AC---TGgattcatattgtatatatcataatatatcatataatatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|10 : TTAACATCCTTGAATGTTGAT-TGTCCAATGAAAATAAT-C----TGCCCCTCATC--AGAGGACGATATGT--TGATGT-GGCCTGGTATCAT--------AGAGAGGGTGAA--TG-------TGAAACAACT-----GCTGCACAAAGTGCCCTTGATAAATTAAC-AAAA-TTAG--CAATTAGT-GAACAAAAGAAAC--AGATT-cattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|12 : tCTATATCCAG--AATATCACTTAG-AACATTATCAGTATTTGAA--C-TTTC-ATCGTCGTGCTTAAAGTTTGAT-TGAGCAA---AAA--ATGTGATGT-CTCACCTTC--AGAGGAAGACACGT--TGATATGGATTTG------T--------GGTAAAAACGAA--CGTATA--T
gi|13 : -T----T-ACT---TGT------GA---C-TGTC-CATTATGTAA----ACAA-TGGCGACTACA-AT---TTAAGTGGGAGAAAAGC-CTCAAACTGTCCA--CAGTATTTG--AAAAA-----AC---T-AT---------------------------GATAAGTTCTTTCTCT-TGGGGAA-TGGCAAGTTT-TTGGTCTCTTTCTTTTACatgta
gi|14 : gtCTGCCCATTC--TTAGAACAAAAGAC----AC----AATATAGG--------G--C-------CTTGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTTGTCAGCTTATATCCTTTAa
gi|15 : tatcattgtcattgggtttacctgcgc--A--AGA-ACATTTTAAGTCGGCTATA-GCACTCAA-CAGTTTATTCCATATGAA--AAAGA-----AC---TGATCTCGGGTCCA----------------CAA------CTTCCTCT-CAGAGAA-TGGCGAGTTT-TCAGt
gi|16 : CAAGCTGTTCATTCTGTGAGAG--AAAAAGAAATACTAGTAATCTCGGTCTTA--------------CT-------TTTTCTCTCT-CAGAGAA-TG-ACAGTTT-TCAGCTAATGTCCTTTATTtccctca
gi|17 : caGC-CTCAAATTGGCCATTATGTGAGAG--AAATA-----AC---TAATCTTGGGCCTAC--GATG-------CTTGAACAATTCTTTCTCT-----------TACAGTTT-TTGGCTGATATCCTTTA
gi|18 : gaCATTCTATGAGAG--AAAGA-----AC---TAATCT------TAC--A--CAATGGGGCTCGATCA-TAATTTCTCT-CACAGAA-TTGACAGATT-GCGGCTTATATCTTT
gi|19 : --G--C-------CTCGATCAGTTTCTTCTCT-CACAAAA-TGAACAGTTT-TTGGCTTATACCCATCAC
gi|2 : tggCAGTC--TTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTACATAAg
gi|2 : ATAACAA-T-CA--TATA-ATACAGA-T----T-ATTATATGA------TC---T-TATA-TGATAT---AT---ACAA-TAT--G--ATT-ATGT---AA--AGGATATAA---CGAAAACTGTACATTCCGTGAGAG--AA--G-----AC---TGtcatattgtatatatcatataagatcatataataatctgtattatatgattgttatgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|20 : AGGATAGAAGC-CTCAAACTGTACATTCTGTTAGAG--AAAGA-----AC---TGATCTCGGCCgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|21 : TTTCTCT-CACGGAAATGTACAGTTTATCGGCTTATATCCTTTAATTAA
gi|3 : t--G--C-------CTTGATCAGTTCTTTCGCGGCACAGAA-TGT-CAGTTTGTCAGCTTATATCCTTTtca
gi|3 : TTTC-ATTAAAATCCCTAA-TTTTAACGTGTGCAAGGAA-----TGA----T-CTCTCCATC--AGAGGAAGACATGGAATGATA--GACTCC-----GTTTACCAGGAGTGAAA-TGGA-----ATA--GGGAAAACACT-----GC-GCACAAAATGCCCTTG----ATT----------C-GTTCAGTTAGT-GAACAAAAGAAAC--AGACA-TC-------TACCAGTTTACATTGTCAGGccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctatcattccatgtcttcctctgatggagagatcattccttgcacacgttaaaattagggattttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|4 : aaaggatataagctgacaaactgacattctgtgccgcgaaagaactgatcaaggcccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgTAGGCTTAATATCATCATTCTCCTTCTTTGTA-CAAGTAAACATCACTGAG--ACGTTATCGGCACTT-AA--T-TTCC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAAA--ATGC----T-CTCTCCACC--AGAGGAACTCATGT--TTGTAT-GATTCACAC--ATT-------GGTGAAAGTGAA--TG-ATA--TTTAAATGATTTTCAAGTTTTATAGA----CCTT-AGAAATTA-CTGAAAACT-GTCCAATAAGT-AAACAAA-GAAAC--AG-CT-TCAC---AAGACTGGTTTTTATTGTCGGTG-ATTTACATTGTTAAACAGTTTTTCCTGG-AGAGGACACTTA--GAGACAATAAGATT-AT--AGGAAAC-ATAA-AA-T-CA--TTTA-AC-TGGA-T----T-ACC---TGA------TA---C-TATC-CAATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATAAAAGC-C-CAAACTGTACATTCTGTAAGAG--AAAGA-----AA---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAActagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|5 : tTAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AAC-TCACTGAGGA-CGTTATCGGTATTT-A---CATTTC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGG--AA--ATAC----T-CTCTCCATCAGAGAGGAACTCATGT--TTGTAT-GATTCA-----AT--------GGTGAAAGTGAA--TGAATA--TTGTAATGATTTCA-AGTTTTATAGA----CCTT-AGAACTTACCTGAAA-CT-GTCCAATAAGTAAAACAAAAGAAAC--AG-CT-T--C-CCAAGACTGGTTTTTATTGTTGGGGTATTTA-------AAACAGCTTTACCTGGCAGAGGACACTTATGAAGACAATG-GATT-AT--AGGAAACGATAA-AA-T-CATTTTTG-A--CGGAGT----T-ACC---TGA------TA---CTTATC-CAATAT-TAAT---ACAA-AGG--AG-ATA-ATGTTTTAAGTAGGATAGAAGC-CGAAAACTGTACATTCTGTAAGAGA-AAAGA-----AC---TGATCTC-GCCCTACGGG--C-------CTCGATCAGT--CTTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTAC
gi|6 : A--TGTC-AT-TGGG-T----TTATC---AGA------GC---C-TGTC-C---AT-TCATCGAACAA-AAG--AT-GTA-ATGTTTTAAGTAGGGTATAAGC-CTCAAACTGGCCATTCTGCGAGAG--AAA----------------CCCG----TAC--GGGC-------CTCGATCAGTTCTTTCTCT-CCCTGAA-TGGACAG-TT-TCGGCTTATATCCTTTAC
gi|6 : TTTC-ATTAAAATCTTTAAATTTTGAC-TGTGCAATGAAAA--TTA-----T-CTTCCTATC--GGAGGAAGATATGT--TGAT--------------AT--------AGTG--AGTGAA--T--ATAAGCTTAAAC-ACCT----GCAGCGCAAAATACCCTTGAtgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactatatcaacatatcttcctccgataggaagataattttcattgcacagtcaaaatttaaagattttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|7 : gtaaaggatataagccgaaactgtccattcagggagagaaagaactgatcgaggcccgtacgggtttctctcgcagaatggccagtttgaggcttataccctacttaaaacattacatcttttgttcgatgaatggacaggctctgataaacccaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagAATGAAATTG-ATA--GTAAAAC-ACCT----GCAGCACAAGATACTTTTTA-----CGACTAACA-CT-GTTCAATCAG---AATAGAAAAAACCCAGACT-TTAC-T-------GGTTAC-ATTGTCGGGCTACTT----TGT-ATACA----------------------TATGGA----ATGAGCTTTATTCATGA--TGATCATAA-T-----TGTA-AT-TGGA-T----TTACC---TGAGTCAGTTAAATT-TATC-C----T-TAGA---ACAA-AGG--AT-GTA-ATAGTTAAAGTAGGATATTATC-CTCAAAATGTCCATTctatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|8 : AA-CT-GTCCAATGTGT-GAACCAAAGAAGC--AGACTGTCACGCCAAGACCGagacaacctaactttaagtattttcatgaaagtaaagtgttgtgaataccgtcact
gi|8 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaaACATCACTTAAGA-CAGTGTCAGTGTTC-AAAGCAGTGCTATTAGCATCCCAAAAGTTTGAA-TGTCCAAT--AGA--AT---------TACTCGT-----AGGAAGACATGT--TGATAT-GACTCG-----AT----------TTAAAGTcacgtttgttagtaacgcactgactttaaatcgagtcatatcaacatgtcttcctacgagtaattctattggacattcaaacttttgggatgctaatagcactgctttgaacactgacactgtcttaagtgatgtggagtgcgagaaacctttggaacctaactttgatgtgaaaa
gi|9 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaacggtcttggcgtgacagtctgcttctttggttcacacattggacagttcacgtttgttagtaacgcactgAGC-CTCAAACTGT---------GAGAG--AAAAC-----AC---TAATGTAGGCCCTAT--G-----------------AGC-----CTCT-CATGGAA-TAGACAGTTT-TTGGCTGATGTCCCTTACggagtgcgagaaacctttggaacctaactttgatgtgaaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTCAGGAATTGATACATTCATATTTTCGCACGTGAGTGGAGGTTTCTTCCAGAAAACTTCTAATCCGGGGGACCGAAGAACGACTGAGGATTGGAGACTGAAGTATTTTATCTCAACGCTACTGAGTTTGTATTCATTGTGGAAGGTTT
Alignments
lowQualScore : 11 222 2222222 111 22222222 44444444444444444 33333333333333333333333333 2222 5555555555555 33333333 5555555555555555555555555 1 11 1 11111 11 111111 111 2222222222222 1111 11111111 22 11111 3333333333333333333333
lowQualScore : 1 1 1 7 88 3 1 777 7777777 6 1 5 2 1 222 0 77 77777777 0 77 77 777 0 77777777777777777 0 99999999999999999999999999 666 1111 5555555555555 6 6 1 6 99 7 6 11111111 1 88 7 1111111111111111111111111 7 6 7 3 88 3 6 3 8 22222 1 6 22 5 444444 000 9999999999999 3333 66666666 5 66 11 5 0 6 0 2 1 3 2 4 6 77 1 00000 555 1 4444444444444444444444 2 1 33 2 0 2 4 8 1
lowQualScore : . . . . .. . . ... ....... . . . . . ... . .. ........ . .. .. ... . ................. . .......................... ... .... ............. . . . . .. . . ........ . .. . ......................... . . . . .. . . . . ..... . . .. . ...... ... ............. .... ........ . .. .. . . . . . . . . . . .. . ..... ... . ...................... . . .. . . . . . .
lowQualScore : 0 0 0 3 33 2 0 555 5555555 7 0 7 7 4 111 1 99 77777777 4 99 99 333 4 66666666666666666 2 00000000000000000000000000 666 4444 2222222222222 7 7 0 7 22 3 7 22222222 4 22 3 0000000000000000000000000 3 7 3 3 33 2 5 2 0 22222 0 7 77 7 666666 000 6666666666666 0000 99999999 7 99 99 0 2 2 2 5 0 6 0 0 3 33 4 88888 444 9 9999999999999999999999 3 2 99 7 8 7 0 0 4
consensus : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----AT--------GGTGAAAGTGAA--TG-ATA--TTGAAACGACTT----GCTGCACAAAATGCCCTTGA-AAATTA-CTGAAA-CT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTTTATTGTCGGGGTATTTA---TGT-AAACAGCTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGATT-AT--AGGAAACGATAACAA-T-CA--TNTA-AT-CGGA-T----T-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
Reference ( family-1368 ) : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----AT--------GGTGAAAGTGAA--TG-ATA--TTGAAACGACTT----GCTGCACAAAATGCCCTTGAGAAATTAACTGAAA-CT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTTTATTGTCGGGGTATTTA---TGT-AAACAGCTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGATT-AT--AGGAAACGATAACAA-T-CA--TNTA-AT-CGGA-T----T-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
gi|1 : CAGTTCTT-CTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACATA
gi|1 : AACAGTAACAAATACA--TATATAA-CAGA-TATATT-ATA---TGA------TA-----TATTATGATAT---AT---ACAATATG--A--ATCTATGT---AA--AGGATATAAGC-CGAAAACTGTACATTCCGTGAGAG---AAGA-----AC---TGgattcatattgtatatatcataatatatcatataatatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|10 : TTAACATCCTTGAATGTTGAT-TGTCCAATGAAAATAAT-C----TGCCCCTCATC--AGAGGACGATATGT--TGATGT-GGCCTGGTATCAT--------AGAGAGGGTGAA--TG-------TGAAACAACT-----GCTGCACAAAGTGCCCTTGATAAATTAAC-AAAA-TTAG--CAATTAGT-GAACAAAAGAAAC--AGATT-cattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|12 : tCTATATCCAG--AATATCACTTAG-AACATTATCAGTATTTGAA--C-TTTC-ATCGTCGTGCTTAAAGTTTGAT-TGAGCAA---AAA--ATGTGATGT-CTCACCTTC--AGAGGAAGACACGT--TGATATGGATTTG------T--------GGTAAAAACGAA--CGTATA--T
gi|13 : -T----T-ACT---TGT------GA---C-TGTC-CATTATGTAA----ACAA-TGGCGACTACA-AT---TTAAGTGGGAGAAAAGC-CTCAAACTGTCCA--CAGTATTTG--AAAAA-----AC---T-AT---------------------------GATAAGTTCTTTCTCT-TGGGGAA-TGGCAAGTTT-TTGGTCTCTTTCTTTTACatgta
gi|14 : gtCTGCCCATTC--TTAGAACAAAAGAC----AC----AATATAGG--------G--C-------CTTGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTTGTCAGCTTATATCCTTTAa
gi|15 : tatcattgtcattgggtttacctgcgc--A--AGA-ACATTTTAAGTCGGCTATA-GCACTCAA-CAGTTTATTCCATATGAA--AAAGA-----AC---TGATCTCGGGTCCA----------------CAA------CTTCCTCT-CAGAGAA-TGGCGAGTTT-TCAGt
gi|16 : CAAGCTGTTCATTCTGTGAGAG--AAAAAGAAATACTAGTAATCTCGGTCTTA--------------CT-------TTTTCTCTCT-CAGAGAA-TG-ACAGTTT-TCAGCTAATGTCCTTTATTtccctca
gi|17 : caGC-CTCAAATTGGCCATTATGTGAGAG--AAATA-----AC---TAATCTTGGGCCTAC--GATG-------CTTGAACAATTCTTTCTCT-----------TACAGTTT-TTGGCTGATATCCTTTA
gi|18 : gaCATTCTATGAGAG--AAAGA-----AC---TAATCT------TAC--A--CAATGGGGCTCGATCA-TAATTTCTCT-CACAGAA-TTGACAGATT-GCGGCTTATATCTTT
gi|19 : --G--C-------CTCGATCAGTTTCTTCTCT-CACAAAA-TGAACAGTTT-TTGGCTTATACCCATCAC
gi|2 : tggCAGTC--TTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTACATAAg
gi|2 : ATAACAA-T-CA--TATA-ATACAGA-T----T-ATTATATGA------TC---T-TATA-TGATAT---AT---ACAA-TAT--G--ATT-ATGT---AA--AGGATATAA---CGAAAACTGTACATTCCGTGAGAG--AA--G-----AC---TGtcatattgtatatatcatataagatcatataataatctgtattatatgattgttatgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|20 : AGGATAGAAGC-CTCAAACTGTACATTCTGTTAGAG--AAAGA-----AC---TGATCTCGGCCgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|21 : TTTCTCT-CACGGAAATGTACAGTTTATCGGCTTATATCCTTTAATTAA
gi|3 : t--G--C-------CTTGATCAGTTCTTTCGCGGCACAGAA-TGT-CAGTTTGTCAGCTTATATCCTTTtca
gi|3 : TTTC-ATTAAAATCCCTAA-TTTTAACGTGTGCAAGGAA-----TGA----T-CTCTCCATC--AGAGGAAGACATGGAATGATA--GACTCC-----GTTTACCAGGAGTGAAA-TGGA-----ATA--GGGAAAACAC-T----GC-GCACAAAATGCCCTTG----ATT----------C-GTTCAGTTAGT-GAACAAAAGAAAC--AGACA-TC-------TACCAGTTTACATTGTCAGGccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctatcattccatgtcttcctctgatggagagatcattccttgcacacgttaaaattagggattttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|4 : aaaggatataagctgacaaactgacattctgtgccgcgaaagaactgatcaaggcccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgTAGGCTTAATATCATCATTCTCCTTCTTTGTA-CAAGTAAACATCACTGAG--ACGTTATCGGCACTT-AA--T-TTCC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAAA--ATGC----T-CTCTCCACC--AGAGGAACTCATGT--TTGTAT-GATTCACAC--ATT-------GGTGAAAGTGAA--TG-ATA--TTTAAATGATTTTCAAGTTTTATAGA----CCTT-AGAAATTA-CTGAAAACT-GTCCAATAAGT-AAACAAA-GAAAC--AG-CT-TCAC---AAGACTGGTTTTTATTGTCGGTG-ATTTACATTGTTAAACAGTTTTTCCTGG-AGAGGACACTTA--GAGACAATAAGATT-AT--AGGAAAC-ATAA-AA-T-CA--TTTA-AC-TGGA-T----T-ACC---TGA------TA---C-TATC-CAATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATAAAAGC-C-CAAACTGTACATTCTGTAAGAG--AAAGA-----AA---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAActagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|5 : tTAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AAC-TCACTGAGGA-CGTTATCGGTATTT-A---CATTTC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGG--AA--ATAC----T-CTCTCCATCAGAGAGGAACTCATGT--TTGTAT-GATTCA-----AT--------GGTGAAAGTGAA--TGAATA--TTGTAATGATTTCAA-GTTTTATAGA----CCTT-AGAACTTACCTGAAA-CT-GTCCAATAAGTAAAACAAAAGAAAC--AG-CT-T--C-CCAAGACTGGTTTTTATTGTTGGGGTATTTA-------AAACAGCTTTACCTGGCAGAGGACACTTATGAAGACAATG-GATT-AT--AGGAAACGATAA-AA-T-CATTTTTG-A--CGGAGT----T-ACC---TGA------TA---CTTATC-CAATAT-TAAT---ACAA-AGG--AG-ATA-ATGTTTTAAGTAGGATAGAAGC-CGAAAACTGTACATTCTGTAAGAGA-AAAGA-----AC---TGATCTC-GCCCTACGGG--C-------CTCGATCAGT--CTTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTAC
gi|6 : A--TGTC-AT-TGGG-T----TTATC---AGA------GC---C-TGTC-C---AT-TCATCGAACAA-AAG--AT-GTA-ATGTTTTAAGTAGGGTATAAGC-CTCAAACTGGCCATTCTGCGAGAG--AAA----------------CCCG----TAC--GGGC-------CTCGATCAGTTCTTTCTCT-CCCTGAA-TGGACAG-TT-TCGGCTTATATCCTTTAC
gi|6 : TTTC-ATTAAAATCTTTAAATTTTGAC-TGTGCAATGAAAA--TTA-----T-CTTCCTATC--GGAGGAAGATATGT--TGAT--------------AT--------AGTG--AGTGAA--T--ATAAGCTTAAAC-ACCT----GCAGCGCAAAATACCCTTGAtgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactatatcaacatatcttcctccgataggaagataattttcattgcacagtcaaaatttaaagattttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|7 : gtaaaggatataagccgaaactgtccattcagggagagaaagaactgatcgaggcccgtacgggtttctctcgcagaatggccagtttgaggcttataccctacttaaaacattacatcttttgttcgatgaatggacaggctctgataaacccaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagAATGAAATTG-ATA--GTAAAAC-ACCT----GCAGCACAAGATACTTTTTA-----CGACTAACA-CT-GTTCAATCAG---AATAGAAAAAACCCAGACT-TTAC-T-------GGTTAC-ATTGTCGGGCTACTT----TGT-ATACA----------------------TATGGA----ATGAGCTTTATTCATGA--TGATCATAA-T-----TGTA-AT-TGGA-T----TTACC---TGAGTCAGTTAAATT-TATC-C----T-TAGA---ACAA-AGG--AT-GTA-ATAGTTAAAGTAGGATATTATC-CTCAAAATGTCCATTctatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|8 : ACATCACTTAAGA-CAGTGTCAGTGTTC-AAAGCAGTGCTATTAGCATCCCAAAAGTTTGAA-TGTCCAAT--AGA--AT---------TACTCGT-----AGGAAGACATGT--TGATAT-GACTCG-----AT----------TTAAAGTCAG--TG------------CG--TT----ACTA-ACAAA-----CGTG-------------AA-CT-GTCCAATGTGT-GAACCAAAGAAGC--AGACTGTCACGCCAAGACCGagacaacctaactttaagtattttcatgaaagtaaagtgttgtgaataccgtcact
gi|9 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaaAGC-CTCAAACTGT---------GAGAG--AAAAC-----AC---TAATGTAGGCCCTAT--G-----------------AGC-----CTCT-CATGGAA-TAGACAGTTT-TTGGCTGATGTCCCTTACggagtgcgagaaacctttggaacctaactttgatgtgaaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTCAGGAATTGATACATTCATATTTTCGCACGTGAGTGGAGGTTTCTTCCAGAAAACTTCTAATCCGGGGGACCGAAGAACGACTGAGGATTGGAGACTGAAGTATTTTATCTCAACGCTACTGAGTTTGTATTCATTGTGGAAGGTTT
Alignments
lowQualScore : 11 222 2222222 111 22222222 44444444444444444444 33333333333333333333333333 2222 5555555555555 44444444 55555555555555555555555555 1 11 1 11111 11 111111 111 2222222222222 1111 11111111 22 11111 3333333333333333333333
lowQualScore : 1 1 1 7 88 3 1 777 7777777 6 1 5 2 1 222 0 77 77777777 0 77 77 777 0 77777777777777777777 0 99999999999999999999999999 666 1111 0000000000000 6 1 6 3 99 7 6 22222222 3 4 7 11111111111111111111111111 8888 7 3 88 7 6 3 8 22222 1 6 22 444444 5 000 9999999999999 3333 66666666 5 66 11 5 0 6 0 2 1 3 2 4 6 77 1 00000 555 1 4444444444444444444444 2 1 33 2 0 2 4 8 1
lowQualScore : . . . . .. . . ... ....... . . . . . ... . .. ........ . .. .. ... . .................... . .......................... ... .... ............. . . . . .. . . ........ . . . .......................... .... . . .. . . . . ..... . . .. ...... . ... ............. .... ........ . .. .. . . . . . . . . . . .. . ..... ... . ...................... . . .. . . . . . .
lowQualScore : 0 0 0 3 33 2 0 555 5555555 7 0 7 7 4 111 1 99 77777777 4 99 99 333 4 66666666666666666666 2 00000000000000000000000000 666 4444 0000000000000 7 0 7 2 22 3 7 88888888 2 0 3 00000000000000000000000000 3333 3 3 33 3 5 2 0 22222 0 7 77 666666 7 000 6666666666666 0000 99999999 7 99 99 0 2 2 2 5 0 6 0 0 3 33 4 88888 444 9 9999999999999999999999 3 2 99 7 8 7 0 0 4
consensus : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----A---T--------GGTGAAAGTGAA--TG-ATA--TTGAAACGACTT----GCTGCACAAAATGCCCTTGA-AAATTA-CTG-AAACT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTNCATTGTCGGGGTATTTA---TG-TAAACAG-CTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGA-TTAT--AGGAAACGATAACAA-T-CA--TNTA-AT-CGGA-T----T-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
Reference ( family-1368 ) : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----A---T--------GGTGAAAGTGAA--TG-ATA--TTGAAACGACTT----GCTGCACAAAATGCCCTTGA-AAATTA-CTG-AAACT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTTTATTGTCGGGGTATTTA---TG-TAAACAG-CTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGA-TTAT--AGGAAACGATAACAA-T-CA--TNTA-AT-CGGA-T----T-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
gi|1 : CAGTTCTT-CTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACATA
gi|1 : AACAGTAACAAATACA--TATATAA-CAGA-TATATT-ATA---TGA------TA-----TATTATGATAT---AT---ACAATATG--A--ATCTATGT---AA--AGGATATAAGC-CGAAAACTGTACATTCCGTGAGAG---AAGA-----AC---TGgattcatattgtatatatcataatatatcatataatatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|10 : TTAACATCCTTGAATGTTGAT-TGTCCAATGAAAATAAT-C----TGCCCCTCATC--AGAGGACGATATGT--TGATGT-GGCCTGGTATCA---T--------AGAGAGGGTGAA--TG-------TGAAACAACT-----GCTGCACAAAGTGCCCTTGATAAATTA-ACA-AAATTAG--CAATTAGT-GAACAAAAGAAAC--AGATT-cattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|12 : tCTATATCCAG--AATATCACTTAG-AACATTATCAGTATTTGAA--C-TTTC-ATCGTCGTGCTTAAAGTTTGAT-TGAGCAA---AAA--ATGTGATGT-CTCACCTTC--AGAGGAAGACACGT--TGATATGGATTTG---------T--------GGTAAAAACGAA--CGTATA--T
gi|13 : -T----T-ACT---TGT------GA---C-TGTC-CATTATGTAA----ACAA-TGGCGACTACA-AT---TTAAGTGGGAGAAAAGC-CTCAAACTGTCCA--CAGTATTTG--AAAAA-----AC---T-AT---------------------------GATAAGTTCTTTCTCT-TGGGGAA-TGGCAAGTTT-TTGGTCTCTTTCTTTTACatgta
gi|14 : gtCTGCCCATTC--TTAGAACAAAAGAC----AC----AATATAGG--------G--C-------CTTGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTTGTCAGCTTATATCCTTTAa
gi|15 : tatcattgtcattgggtttacctgcgc--A--AGA-ACATTTTAAGTCGGCTATA-GCACTCAA-CAGTTTATTCCATATGAA--AAAGA-----AC---TGATCTCGGGTCCA----------------CAA------CTTCCTCT-CAGAGAA-TGGCGAGTTT-TCAGt
gi|16 : CAAGCTGTTCATTCTGTGAGAG--AAAAAGAAATACTAGTAATCTCGGTCTTA--------------CT-------TTTTCTCTCT-CAGAGAA-TG-ACAGTTT-TCAGCTAATGTCCTTTATTtccctca
gi|17 : caGC-CTCAAATTGGCCATTATGTGAGAG--AAATA-----AC---TAATCTTGGGCCTAC--GATG-------CTTGAACAATTCTTTCTCT-----------TACAGTTT-TTGGCTGATATCCTTTA
gi|18 : gaCATTCTATGAGAG--AAAGA-----AC---TAATCT------TAC--A--CAATGGGGCTCGATCA-TAATTTCTCT-CACAGAA-TTGACAGATT-GCGGCTTATATCTTT
gi|19 : --G--C-------CTCGATCAGTTTCTTCTCT-CACAAAA-TGAACAGTTT-TTGGCTTATACCCATCAC
gi|2 : tggCAGTC--TTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTACATAAg
gi|2 : ATAACAA-T-CA--TATA-ATACAGA-T----T-ATTATATGA------TC---T-TATA-TGATAT---AT---ACAA-TAT--G--ATT-ATGT---AA--AGGATATAA---CGAAAACTGTACATTCCGTGAGAG--AA--G-----AC---TGtcatattgtatatatcatataagatcatataataatctgtattatatgattgttatgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|20 : AGGATAGAAGC-CTCAAACTGTACATTCTGTTAGAG--AAAGA-----AC---TGATCTCGGCCgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|21 : TTTCTCT-CACGGAAATGTACAGTTTATCGGCTTATATCCTTTAATTAA
gi|3 : t--G--C-------CTTGATCAGTTCTTTCGCGGCACAGAA-TGT-CAGTTTGTCAGCTTATATCCTTTtca
gi|3 : TTTC-ATTAAAATCCCTAA-TTTTAACGTGTGCAAGGAA-----TGA----T-CTCTCCATC--AGAGGAAGACATGGAATGATA--GACTCC-----G---TTTACCAGGAGTGAAA-TGGA-----ATA--GGGAAAACACT-----GC-GCACAAAATGCCCTTGA----TT----------C-GTTCAGTTAGT-GAACAAAAGAAAC--AGACA-TC-------TACCAGTTTACATTGTCAGGccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctatcattccatgtcttcctctgatggagagatcattccttgcacacgttaaaattagggattttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|4 : aaaggatataagctgacaaactgacattctgtgccgcgaaagaactgatcaaggcccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgTAGGCTTAATATCATCATTCTCCTTCTTTGTA-CAAGTAAACATCACTGAG--ACGTTATCGGCACTT-AA--T-TTCC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAAA--ATGC----T-CTCTCCACC--AGAGGAACTCATGT--TTGTAT-GATTCAC----ACATT--------GGTGAAAGTGAA--TG-ATA--TTTAAATGATTTTCAAGTTTTATAGA----CCTTAG-AAATTA-CTGAAAACT-GTCCAATAAGT-AAAC-AAAGAAAC--AG-CT-TCA---CAAGACTGGTTTTTATTGTCGGTG-ATTTACATTGTTAAACAGTTTTT-CCTGG-AGAGGACACTTA--GAGACAATAAGA-TTAT--AGGAAAC-ATAA-AA-T-CA--TTTA-AC-TGGA-T----T-ACC---TGA------TA---C-TATC-CAATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATAAAAGC-C-CAAACTGTACATTCTGTAAGAG--AAAGA-----AA---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAActagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|5 : tTAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AAC-TCACTGAGGA-CGTTATCGGTATTT-A---CATTTC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGG--AA--ATAC----T-CTCTCCATCAGAGAGGAACTCATGT--TTGTAT-GATTCA-----A---T--------GGTGAAAGTGAA--TGAATA--TTGTAATGATTTCAA-GTTTTATAGA----CCTTAG-AACTTACCTG-AAACT-GTCCAATAAGTAAAACAAAAGAAAC--AG-CT-T--C-CCAAGACTGGTTTTTATTGTTGGGGTATTTA-------AAACAG-CTTTACCTGGCAGAGGACACTTATGAAGACAATG-GA-TTAT--AGGAAACGATAA-AA-T-CATTTTTG-A--CGGAGT----T-ACC---TGA------TA---CTTATC-CAATAT-TAAT---ACAA-AGG--AG-ATA-ATGTTTTAAGTAGGATAGAAGC-CGAAAACTGTACATTCTGTAAGAGA-AAAGA-----AC---TGATCTC-GCCCTACGGG--C-------CTCGATCAGT--CTTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTAC
gi|6 : A--TGTC-AT-TGGG-T----TTATC---AGA------GC---C-TGTC-C---AT-TCATCGAACAA-AAG--AT-GTA-ATGTTTTAAGTAGGGTATAAGC-CTCAAACTGGCCATTCTGCGAGAG--AAA----------------CCCG----TAC--GGGC-------CTCGATCAGTTCTTTCTCT-CCCTGAA-TGGACAG-TT-TCGGCTTATATCCTTTAC
gi|6 : TTTC-ATTAAAATCTTTAAATTTTGAC-TGTGCAATGAAAA--TTA-----T-CTTCCTATC--GGAGGAAGATATGT--TGAT--------------A---T--------AGTG--AGTGAA--T--ATAAGCTTAAAC-ACCT----GCAGCGCAAAATACCCTTGA-tgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactatatcaacatatcttcctccgataggaagataattttcattgcacagtcaaaatttaaagattttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|7 : gtaaaggatataagccgaaactgtccattcagggagagaaagaactgatcgaggcccgtacgggtttctctcgcagaatggccagtttgaggcttataccctacttaaaacattacatcttttgttcgatgaatggacaggctctgataaacccaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagAATGAAATTG-ATA--GTAAAAC-ACCT----GCAGCACAAGATACTTTTTA-CGA----CTA-ACACT-GTTCAATCAG---AATAGAAAAAACCCAGACT-TT--------ACTGG-TTACATTGTCGGGCTACTT----TG-TATACA-----------------------TATGG----AATGAGCTTTATTCATG--ATGATCATAA-T-----TGTA-AT-TGGATT----T-ACC---TGAGTCAGTTAAATT-TATC-C----T-TAGA---ACAA-AGG--AT-GTA-ATAGTTAAAGTAGGATATTATC-CTCAAAATGTCCATTctatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|8 : ACATCACTTAAGA-CAGTGTCAGTGTTC-AAAGCAGTGCTATTAGCATCCCAAAAGTTTGAA-TGTCCAAT--AGA--AT---------TACTCGT-----AGGAAGACATGT--TGATAT-GACTCG-----A---T----------TTAAAGTCAG--TG------------CG--TT----ACTA-ACAAA-----CGTG--------------AACT-GTCCAATGTGT-GAACCAAAGAAGC--AGACTGTCACGCCAAGACCGagacaacctaactttaagtattttcatgaaagtaaagtgttgtgaataccgtcact
gi|9 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaaAGC-CTCAAACTGT---------GAGAG--AAAAC-----AC---TAATGTAGGCCCTAT--G-----------------AGC-----CTCT-CATGGAA-TAGACAGTTT-TTGGCTGATGTCCCTTACggagtgcgagaaacctttggaacctaactttgatgtgaaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTCAGGAATTGATACATTCATATTTTCGCACGTGAGTGGAGGTTTCTTCCAGAAAACTTCTAATCCGGGGGACCGAAGAACGACTGAGGATTGGAGACTGAAGTATTTTATCTCAACGCTACTGAGTTTGTATTCATTGTGGAAGGTTT
Alignments
lowQualScore : 11 222 2222222 111 22222222 44444444444444444444 33333333333333333333333333 2222 5555555555555 44444444 55555555555555555555555555 1 11 1 11111 11 111111 111 2222222222222 1111 11111111 22 11111 3333333333333333333333
lowQualScore : 1 1 1 7 88 3 1 777 7777777 6 1 5 2 1 222 0 77 77777777 0 77 77 777 0 77777777777777777777 0 99999999999999999999999999 666 1111 0000000000000 6 1 6 3 99 7 6 22222222 3 1 7 11111111111111111111111111 8888 7 3 88 7 6 3 8 22222 1 6 22 444444 5 000 9999999999999 3333 66666666 5 66 11 5 0 6 0 2 1 3 2 4 6 77 1 00000 555 1 4444444444444444444444 2 1 33 2 0 2 4 8 1
lowQualScore : . . . . .. . . ... ....... . . . . . ... . .. ........ . .. .. ... . .................... . .......................... ... .... ............. . . . . .. . . ........ . . . .......................... .... . . .. . . . . ..... . . .. ...... . ... ............. .... ........ . .. .. . . . . . . . . . . .. . ..... ... . ...................... . . .. . . . . . .
lowQualScore : 0 0 0 3 33 2 0 555 5555555 7 0 7 7 4 111 1 99 77777777 4 99 99 333 4 66666666666666666666 2 00000000000000000000000000 666 4444 0000000000000 7 0 7 2 22 3 7 88888888 2 0 3 00000000000000000000000000 3333 3 3 33 3 5 2 0 22222 0 7 77 666666 7 000 6666666666666 0000 99999999 7 99 99 0 2 2 2 5 0 6 0 0 3 33 4 88888 444 9 9999999999999999999999 3 2 99 7 8 7 0 0 4
consensus : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----A---T--------GGTGAAAGTGAA--TG-ATA--TTGAAACGACTT----GCTGCACAAAATGCCCTTGA-AAATTA-CTG-AAACT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTNCATTGTCGGGGTATTTA---TG-TAAACAG-CTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGA-TTAT--AGGAAACGATAACAA-T-CA--TNTA-AT-CGGA-T----T-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
Reference ( family-1368 ) : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----A---T--------GGTGAAAGTGAA--TG-ATA--TTGAAACGACTT----GCTGCACAAAATGCCCTTGA-AAATTA-CTG-AAACT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTNCATTGTCGGGGTATTTA---TG-TAAACAG-CTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGA-TTAT--AGGAAACGATAACAA-T-CA--TNTA-AT-CGGA-T----T-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
gi|1 : CAGTTCTT-CTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACATA
gi|1 : AACAGTAACAAATACA--TATATAA-CAGA-TATATT-ATA---TGA------TA-----TATTATGATAT---AT---ACAATATG--A--ATCTATGT---AA--AGGATATAAGC-CGAAAACTGTACATTCCGTGAGAG---AAGA-----AC---TGgattcatattgtatatatcataatatatcatataatatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|10 : TTAACATCCTTGAATGTTGAT-TGTCCAATGAAAATAAT-C----TGCCCCTCATC--AGAGGACGATATGT--TGATGT-GGCCTGGTATCA---T--------AGAGAGGGTGAA--TG-------TGAAACAACT-----GCTGCACAAAGTGCCCTTGATAAATTA-ACA-AAATTAG--CAATTAGT-GAACAAAAGAAAC--AGATT-cattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|12 : tCTATATCCAG--AATATCACTTAG-AACATTATCAGTATTTGAA--C-TTTC-ATCGTCGTGCTTAAAGTTTGAT-TGAGCAA---AAA--ATGTGATGT-CTCACCTTC--AGAGGAAGACACGT--TGATATGGATTTG---------T--------GGTAAAAACGAA--CGTATA--T
gi|13 : -T----T-ACT---TGT------GA---C-TGTC-CATTATGTAA----ACAA-TGGCGACTACA-AT---TTAAGTGGGAGAAAAGC-CTCAAACTGTCCA--CAGTATTTG--AAAAA-----AC---T-AT---------------------------GATAAGTTCTTTCTCT-TGGGGAA-TGGCAAGTTT-TTGGTCTCTTTCTTTTACatgta
gi|14 : gtCTGCCCATTC--TTAGAACAAAAGAC----AC----AATATAGG--------G--C-------CTTGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTTGTCAGCTTATATCCTTTAa
gi|15 : tatcattgtcattgggtttacctgcgc--A--AGA-ACATTTTAAGTCGGCTATA-GCACTCAA-CAGTTTATTCCATATGAA--AAAGA-----AC---TGATCTCGGGTCCA----------------CAA------CTTCCTCT-CAGAGAA-TGGCGAGTTT-TCAGt
gi|16 : CAAGCTGTTCATTCTGTGAGAG--AAAAAGAAATACTAGTAATCTCGGTCTTA--------------CT-------TTTTCTCTCT-CAGAGAA-TG-ACAGTTT-TCAGCTAATGTCCTTTATTtccctca
gi|17 : caGC-CTCAAATTGGCCATTATGTGAGAG--AAATA-----AC---TAATCTTGGGCCTAC--GATG-------CTTGAACAATTCTTTCTCT-----------TACAGTTT-TTGGCTGATATCCTTTA
gi|18 : gaCATTCTATGAGAG--AAAGA-----AC---TAATCT------TAC--A--CAATGGGGCTCGATCA-TAATTTCTCT-CACAGAA-TTGACAGATT-GCGGCTTATATCTTT
gi|19 : --G--C-------CTCGATCAGTTTCTTCTCT-CACAAAA-TGAACAGTTT-TTGGCTTATACCCATCAC
gi|2 : tggCAGTC--TTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTACATAAg
gi|2 : ATAACAA-T-CA--TATA-ATACAGA-T----T-ATTATATGA------TC---T-TATA-TGATAT---AT---ACAA-TAT--G--ATT-ATGT---AA--AGGATATAA---CGAAAACTGTACATTCCGTGAGAG--AA--G-----AC---TGtcatattgtatatatcatataagatcatataataatctgtattatatgattgttatgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|20 : AGGATAGAAGC-CTCAAACTGTACATTCTGTTAGAG--AAAGA-----AC---TGATCTCGGCCgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|21 : TTTCTCT-CACGGAAATGTACAGTTTATCGGCTTATATCCTTTAATTAA
gi|3 : t--G--C-------CTTGATCAGTTCTTTCGCGGCACAGAA-TGT-CAGTTTGTCAGCTTATATCCTTTtca
gi|3 : TTTC-ATTAAAATCCCTAA-TTTTAACGTGTGCAAGGAA-----TGA----T-CTCTCCATC--AGAGGAAGACATGGAATGATA--GACTCC-----G---TTTACCAGGAGTGAAA-TGGA-----ATA--GGGAAAACACT-----GC-GCACAAAATGCCCTTGA----TT----------C-GTTCAGTTAGT-GAACAAAAGAAAC--AGACA-TC-------TACCAGTTTACATTGTCAGGccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctatcattccatgtcttcctctgatggagagatcattccttgcacacgttaaaattagggattttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|4 : aaaggatataagctgacaaactgacattctgtgccgcgaaagaactgatcaaggcccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgTAGGCTTAATATCATCATTCTCCTTCTTTGTA-CAAGTAAACATCACTGAG--ACGTTATCGGCACTT-AA--T-TTCC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAAA--ATGC----T-CTCTCCACC--AGAGGAACTCATGT--TTGTAT-GATTCAC----ACATT--------GGTGAAAGTGAA--TG-ATA--TTTAAATGATTTTCAAGTTTTATAGA----CCTTAG-AAATTA-CTGAAAACT-GTCCAATAAGT-AAAC-AAAGAAAC--AG-CT-TCA---CAAGACTGGTTTTTATTGTCGGTG-ATTTACATTGTTAAACAGTTTTT-CCTGG-AGAGGACACTTA--GAGACAATAAGA-TTAT--AGGAAAC-ATAA-AA-T-CA--TTTA-AC-TGGA-T----T-ACC---TGA------TA---C-TATC-CAATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATAAAAGC-C-CAAACTGTACATTCTGTAAGAG--AAAGA-----AA---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAActagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|5 : tTAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AAC-TCACTGAGGA-CGTTATCGGTATTT-A---CATTTC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGG--AA--ATAC----T-CTCTCCATCAGAGAGGAACTCATGT--TTGTAT-GATTCA-----A---T--------GGTGAAAGTGAA--TGAATA--TTGTAATGATTTCAA-GTTTTATAGA----CCTTAG-AACTTACCTG-AAACT-GTCCAATAAGTAAAACAAAAGAAAC--AG-CT-T--C-CCAAGACTGGTTTTTATTGTTGGGGTATTTA-------AAACAG-CTTTACCTGGCAGAGGACACTTATGAAGACAATG-GA-TTAT--AGGAAACGATAA-AA-T-CATTTTTG-A--CGGAGT----T-ACC---TGA------TA---CTTATC-CAATAT-TAAT---ACAA-AGG--AG-ATA-ATGTTTTAAGTAGGATAGAAGC-CGAAAACTGTACATTCTGTAAGAGA-AAAGA-----AC---TGATCTC-GCCCTACGGG--C-------CTCGATCAGT--CTTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTAC
gi|6 : A--TGTC-AT-TGGG-T----TTATC---AGA------GC---C-TGTC-C---AT-TCATCGAACAA-AAG--AT-GTA-ATGTTTTAAGTAGGGTATAAGC-CTCAAACTGGCCATTCTGCGAGAG--AAA----------------CCCG----TAC--GGGC-------CTCGATCAGTTCTTTCTCT-CCCTGAA-TGGACAG-TT-TCGGCTTATATCCTTTAC
gi|6 : TTTC-ATTAAAATCTTTAAATTTTGAC-TGTGCAATGAAAA--TTA-----T-CTTCCTATC--GGAGGAAGATATGT--TGAT--------------A---T--------AGTG--AGTGAA--T--ATAAGCTTAAAC-ACCT----GCAGCGCAAAATACCCTTGA-tgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactatatcaacatatcttcctccgataggaagataattttcattgcacagtcaaaatttaaagattttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|7 : gtaaaggatataagccgaaactgtccattcagggagagaaagaactgatcgaggcccgtacgggtttctctcgcagaatggccagtttgaggcttataccctacttaaaacattacatcttttgttcgatgaatggacaggctctgataaacccaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagAATGAAATTG-ATA--GTAAAAC-ACCT----GCAGCACAAGATACTTTTTA-CGA----CTA-ACACT-GTTCAATCAG---AATAGAAAAAACCCAGACT-TT--------ACTGG-TTACATTGTCGGGCTACTT----TG-TATACA-----------------------TATGG----AATGAGCTTTATTCATG--ATGATCATAA-T-----TGTA-AT-TGGATT----T-ACC---TGAGTCAGTTAAATT-TATC-C----T-TAGA---ACAA-AGG--AT-GTA-ATAGTTAAAGTAGGATATTATC-CTCAAAATGTCCATTctatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|8 : ACATCACTTAAGA-CAGTGTCAGTGTTC-AAAGCAGTGCTATTAGCATCCCAAAAGTTTGAA-TGTCCAAT--AGA--AT---------TACTCGT-----AGGAAGACATGT--TGATAT-GACTCG-----A---T----------TTAAAGTCAG--TG------------CG--TT----ACTA-ACAAA-----CGTG--------------AACT-GTCCAATGTGT-GAACCAAAGAAGC--AGACTGTCACGCCAAGACCGagacaacctaactttaagtattttcatgaaagtaaagtgttgtgaataccgtcact
gi|9 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaaAGC-CTCAAACTGT---------GAGAG--AAAAC-----AC---TAATGTAGGCCCTAT--G-----------------AGC-----CTCT-CATGGAA-TAGACAGTTT-TTGGCTGATGTCCCTTACggagtgcgagaaacctttggaacctaactttgatgtgaaaa
blockSeqs : C G A T TA A G GA AAAGCA T T G A A GGA . GTGATGT AG AA ATG CGTTTACCAGGA TGATATTTAAATGATTTTCAA TTT ATGC GAAATTACTGA . T A A CC A G CACGCCAA T T T AAAACAGCTTTACCTGGC TGAA A T TC A G C . CATT A . TA GT T ATA GTCAGTTAAATT CAT TCATCGA . CG CT . T G A A T C A CA A GAAAT TAG A TGGGCCTACGATG T T TC G A G G T
blockSeqs : . . A G GA AAT . A . T A GGA . GAT . . AT ACACATTG TGAATATTGTAATGATTTCAA TTT ATAC GAACTTACCTG . A . A . A . CACAA T T T TGTATACA TGG . . . . G T . CA T . C TT . . TACT TGA GTAA . . G . T G T . T C C A G C . G TACACAATGGGG C A TC . . T A A
blockSeqs : . T A ACA . T . C G TGA . GCT . . AT AATG ATTGATAGTAAAACACCT AGC ATAC ACGACTA . A . A . A . CCCAA . A . . . CA T . T T . . GAC CAA TAAT . . T . T G T . T T T . G . . A CGCCCTACGGGC T T TT . . G G T
blockSeqs : . T . C G GG . ACT . . AT GTG TATAAGCTTAAACACCT AGC . ATT . C . C . . . T . . . G . T T . . TCT CAA TAAT . . T . T G G . G T T . A . . A CGGCCCTACGC C T TC . . T . T
blockSeqs : . A . T A T . AT . . A ATA ATAGGGAAAACACT GC . . . G . . . . . G . . T . . TAC C TAGA . . . . T G A . T C T . T . . A AGGCCCTATG C T AA . . G .
blockSeqs : G . T A . . . . . . GAT TGCGTT TA . T . . GCC C AT . . . . . G G . G A C . G . . G CGTACGGGC T T TT . . A .
blockSeqs : . . . . . T . T A T . G . . G CGGGTCCA C T TC . . T .
blockSeqs : T . T A T . G . . G CGGTCTTA C T TC . . T .
blockSeqs : . T A T . G . . G AGGGC C . TC . . T .
blockSeqs : . . C T . A . . A . . C . . T .
blockSeqs : C . . . . . . . . C . . T .
blockSeqs : . . . . . . . . . . G .
blockSeqs : . . . G .
blockSeqs : . . . .
blockSeqCons : ** GATTG*************** TGATANTGAAACACCT********** ATC* CCAA**** CA*** T***** NNC********** CGA* TAAN**** CGGCCTACGC************
originalCons : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCG-----A---T--------GGTGAAAGTGAA--TG-ATA--TTGAAACGACTT----GCTGCACAAAATGCCCTTGA-AAATTA-CTG-AAACT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCAC-CCAAGACCGGTTTNCATTGTCGGGGTATTTA---TG-TAAACAG-CTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGA-TTAT--AGGAAACGATAACAA-T-CA--TNTA-AT-CGGA-T----T-ACC---TGA------TA---C-TATC-CGATAT-TAAT---ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCCTAC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
finalCons : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATC--AGAGGAAGACATGT--TGATAT-GACTCGATTG---------------GTGAAAGTGAATGATANTGAAACACCT----------GCTGCACAAAATC-CCTTGA-AAATTA-CTG-AAACT-GTCCAATNAGT-GAACAAAAGAAAC--AGACT-TCCAA----GACCGGTTTNCATTGTCGGGGTATTTA---TG-TAAACAG-CTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGA-TTAT--AGGAAACGATAACAA-TCA---TNTA-AT-CGGAT-----T-ACC---TGANNC----------TATCCGA-TATTAAN----ACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----AC---TGATCTCGGCCTACGC------------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTCAGGAATTGATACATTCATATTTTCGCACGTGAGTGGAGGTTTCTTCCAGAAAACTTCTAATCCGGGGGACCGAAGAACGACTGAGGATTGGAGACTGAAGTATTTTATCTCAACGCTACTGAGTTTGTATTCATTGTGGAAGGTTT
Alignments
lowQualScore : 11 222 2222222 22222222222222 11 3333333333333 6666666666666666666666666666666666666666666666666666666666666666666 22222222222 5555555555555555555555555 1 11 1 1111111 111111 111 222222222222 1111111 11111 22 11111 444444444444444444444444
lowQualScore : 1 1 1 7 88 3 1 777 7777777 6 1 5 2 6 3 99999999999999 0 77 77 00 0 3333333333333 11 1111111111111111111111111111111111111111111111111111111111111111111 6 1 6 99 3 88888888888 3 1 7 1111111111111111111111111 8888 7 3 88 7 6 3 8 8 1 7777777 444444 5 000 444444444444 5 1111111 88888 5 66 11 5 0 6 0 2 1 3 2 4 6 77 1 00000 7777 888888888888888888888888 2 33 2 0 2 4 8 1
lowQualScore : . . . . .. . . ... ....... . . . . . . .............. . .. .. .. . ............. .. ................................................................... . . . .. . ........... . . . ......................... .... . . .. . . . . . . ....... ...... . ... ............ . ....... ..... . .. .. . . . . . . . . . . .. . ..... .... ........................ . .. . . . . . .
lowQualScore : 0 0 0 3 33 2 0 555 5555555 7 0 7 7 3 0 77777777777777 4 99 99 77 4 1111111111111 99 2222222222222222222222222222222222222222222222222222222222222222222 7 0 7 22 2 33333333333 2 0 3 0000000000000000000000000 3333 3 3 33 3 5 2 0 0 0 0000000 666666 7 000 333333333333 7 9999999 11111 7 99 99 0 2 2 2 5 0 6 0 0 3 33 4 88888 3333 333333333333333333333333 3 99 7 8 7 0 0 4
consensus : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATCAGAG--GAAGACATGT--TGATAT-GACTC-G---AT----TGGTGAAAGTGAA--TG--A-TA--NTGAAA-C-ACCT----GCTGCACAAAAT-CCCTTGA-AA-TT---AC-TGAAA-CT-GTCCAATNAGTGAA-CAAAAGAAA--CAGACT-T----C-CAAGACCGGTTTNCATTGTCGGGGTATTTA---TGT-AAACAGCTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGA-TTAT--AGGAAACGATAACAA-T-CATNT--A-AT-CGGA-T----T-ACC---TGATAC---------T-ATC-CGAT--AT-TAATACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----ACTG---ATCTC-GG-CCT-AC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
Reference ( family-1368 ) : NTAGGCTTNATATCANCATTNTCCTTCTCTATATCAAG--AACATCACTNAGGAACGTTATCGGTATTT-AA--CATTTC-ATTANCATCCCTAAATTTTGAT-TGCGCGANGAAAA--ATGC----T-CTCCCCATCAGAG--GAAGACATGT--TGATAT-GACTC-G---AT----TGGTGAAAGTGAA--TG--A-TA--NTGAAA-C-ACCT----GCTGCACAAAAT-CCCTTGA-AAATT---AC-TGAAA-CT-GTCCAATNAGTGAA-CAAAAGAAA--CAGACT-T----C-CAAGACCGGTTTNCATTGTCGGGGTATTTA---TGT-AAACAGCTTT-CCTGG-AGAGGACACTTATGGAGACAATGAGA-TTAT--AGGAAACGATAACAA-T-CATNT--A-AT-CGGA-T----T-ACC---TGANNC---------T-ATC-CGAT--AT-TAANACAA-AGG--A--ATA-ATGTTTTAAGTAGGATANAAGC-CTCAAACTGTNCATTCCGTGAGAG--AAAGA-----ACTG---ATCTC-GG-CCT-AC--G--C-------CTCGATCAGTTCTTTCTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAA
gi|1 : CAGTTCTT-CTCT-CACGGAA-TGTACAGTTT-TCGGCTTATATCCTTTACATA
gi|1 : AACAGTAACAAATACATAT--ATAA-CAGA-TATATT-ATA---TGATA----------T-ATTATGAT--AT---ATACAATATG--A--ATCTATGT---AA--AGGATATAAGC-CGAAAACTGTACATTCCGTGAGAG---AAGA-----ACTG---gattcatattgtatatatcataatatatcatataatatatctgttatatatgtatttgttactgttcattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|10 : TTAACATCCTTGAATGTTGAT-TGTCCAATGAAAATAAT-C----TGCCCCTCATCAGAG--GACGATATGT--TGATGT-GGCCT-G---GTATCATAGAGAGGGTGAA--TG---------TGAAA-C-AACT----GCTGCACAAAGTGCCCTTGATAAATT---AA-CAAAA-TTAG--CAATTAGTGAA-CAAAAGAAA--CAGATT-cattttttagatggtgtattaatatgataaagtgttagcgcatgagaaatcctgataggcttaaaattaacataaatataaataatgggccatatattannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatttatttgtaggaattgataacaaatgggcttccagaactttatcctgagggggacctgaagaacgatgaggatgaactgaagtatttttcaacggcagtatattgtgagtttttcatattttaagcgtgatttctaatgcatgtctatgaagtatgtatggatatttttgagggtatggattagcttattttcgatgtatttatgtcttcaagagaataaagtatttttatactcccag
gi|12 : tCTATATCCAG--AATATCACTTAG-AACATTATCAGTATTTGAA--C-TTTC-ATCGTCGTGCTTAAAGTTTGAT-TGAGC---AAAAA--ATGTGATGT-CTCACCTTCAGAG--GAAGACACGT--TGATATGGATTT-G---------TGGTAAAAACGAA--CGT-A-TA--
gi|13 : -T----T-ACT---TGTGAC---------T-GTC-CATT--ATGTAA-ACAA-TGGCGACTACA-AT---TTAAGTGGGAGAAAAGC-CTCAAACTGTCCA--CAGTATTTG--AAAAA-----ACT----AT-----------------------------GATAAGTTCTTTCTCT-TGGGGAA-TGGCAAGTTT-TTGGTCTCTTTCTTTTACtatgta
gi|14 : gtCTGCCCATTC--TTAGAACAAAAGAC----AC-A---ATATA-GG---------G--C-------CTTGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTTGTCAGCTTATATCCTTTAa
gi|15 : tatcattgtcattgggtttacctgcgc--A--AGA-ACATTTTAAGTCGGCTATA-GCACTCAA-CAGTTTATTCCATATGAA--AAAGA-----ACTG---ATCTC-GG---------GT-C-------CACAA------CTTCCTCT-CAGAGAA-TGGCGAGTTT-TCAGt
gi|16 : CAAGCTGTTCATTCTGTGAGAG--AAAAAGAAATACTAGTAATCTC-GG-TCTTAC------------------T---TTTTCTCTCT-CAGAGAA-TG-ACAGTTT-TCAGCTAATGTCCTTTATTtccctca
gi|17 : caGC-CTCAAATTGGCCATTATGTGAGAG--AAATA-----ACTA---ATCTTGGG-CCT-AC--GATG-------CTTGAACAATTCTTTCTCT-----------TACAGTTT-TTGGCTGATATCCTTTA
gi|18 : gaCATTCTATGAGAG--AAAGA-----ACTA---ATCT-------T-AC--A--CAATGGGGCTCGATCA-TAATTTCTCT-CACAGAA-TTGACAGATT-GCGGCTTATATCTTT
gi|19 : --G--C-------CTCGATCAGTTTCTTCTCT-CACAAAA-TGAACAGTTT-TTGGCTTATACCCATCAC
gi|2 : tggCAGTC--TTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTACATAAg
gi|2 : ATAACAA-T-CATAT--A-ATACAGA-T----T-ATTATATGATCT---------T-ATA-TGAT--AT---ATACAA-TAT--G--ATT-ATGT---AA--AGGATATAA---CGAAAACTGTACATTCCGTGAGAG--AA--G-----ACTG---tcatattgtatatatcatataagatcatataataatctgtattatatgattgttatgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|20 : AGGATAGAAGC-CTCAAACTGTACATTCTGTTAGAG--AAAGA-----ACTG---ATCTC-GG-CCgtcaattttttaatgttgtataatatatgatgaaagtgtagcgcatgaggaatcctgtaggctaaaatataacataaattaataatggtgccatatacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtcttgattttattgtcaggaattgatacaaatgggcttccagaactttatccgaggggacctgaagaacgatgaggatgaactgaagtattttcaacgatgtatattattgtgagtttttcatgatttaagcgatttcctatgcatgtcatggaagtgtaggatatttttgggaggggtgtggggatagctttattgtcgatggtatttagtcttcaaagagacataaagtaattcttctaaccccagc
gi|21 : TTTCTCT-CACGGAAATGTACAGTTTATCGGCTTATATCCTTTAATTAA
gi|3 : t--G--C-------CTTGATCAGTTCTTTCGCGGCACAGAA-TGT-CAGTTTGTCAGCTTATATCCTTTtca
gi|3 : TTTC-ATTAAAATCCCTAA-TTTTAACGTGTGCAAGGAA-----TGA----T-CTCTCCATCAGAG--GAAGACATGGAATGATA--GACTCCG---TT----TACCAGGAGTGAAA-TGGAA-TA--GGGAAAAC-AC-T----GC-GCACAAAATGCCCTTGA----TT-------------C-GTTCAGTTAGTGAA-CAAAAGAAA--CAGACA-T----C-T---ACCAGTTTACATTGTCAGGccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgcctgacaatgtaaactggtagatgtctgtttcttttgttcactaactgaacgaatcaagggcattttgtgcgcagtgttttccctattccatttcactcctggtaaacggagtctatcattccatgtcttcctctgatggagagatcattccttgcacacgttaaaattagggattttaatgaaactagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|4 : aaaggatataagctgacaaactgacattctgtgccgcgaaagaactgatcaaggcccgtaaatattgtgtcttttgttctaaagaatggcaggcgcaggttaaacccaatgacaatgctacagcacgaataaggatcattctaaataacaaagttgTAGGCTTAATATCATCATTCTCCTTCTTTGTA-CAAGTAAACATCACTGAG--ACGTTATCGGCACTT-AA--T-TTCC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAAA--ATGC----T-CTCTCCACCAGAG--GAACTCATGT--TTGTAT-GATTC-ACACAT----TGGTGAAAGTGAA--TG--A-TA--TTTAAA-TGATTTTCAAGTTTTATAGA----CCTTAG-AAATT---AC-TGAAAACT-GTCCAATAAGTAAA-CAAA-GAAA--CAG-CT-T----CACAAGACTGGTTTTTATTGTCGGTG-ATTTACATTGTTAAACAGTTTTTCCTGG-AGAGGACACTTA--GAGACAATAAGA-TTAT--AGGAAAC-ATAA-AA-T-CATTT--A-AC-TGGA-T----T-ACC---TGATAC---------T-ATC-CAAT--AT-TAATACAA-AGG--A--ATA-ATGTTTTAAGTAGGATAAAAGC-C-CAAACTGTACATTCTGTAAGAG--AAAGA-----AATG---ATCTC-GGCCCT-AC--G--C-------CTCGATCAGTTCTTTCTCT-CACAGAA-TGTACAGTTT-TCGGCTTATATCCTTTACTTAActagagtactgttttaataaaactactgtgaacacttttatttcttaactgatattcggatacggaggaaagctatggaagttaaattttgatctgaaaagccattgtaaatttcgaataccgcgtacatcagatacgggttaggaaagatgtgaattaataccagtaaaaaagaaaccaagattgccccactcgtgcatgaaatt
gi|5 : tTAGGCTTCATATCAGCATTATCCTTCTCTATATCAAG--AAC-TCACTGAGGA-CGTTATCGGTATTT-A---CATTTC-ACTCTCATCCCTAAATTTTGAT-TGCGTGAGGAAA----TAC----T-CTCTCCATCAGAGAGGAACTCATGT--TTGTAT-GATTC-A---AT-----GGTGAAAGTGAA--TG--AATA--TTGTAA-TGATTTCAA-GTTTTATAGA----CCTTAG-AACTT---ACCTGAAA-CT-GTCCAATAAGTAAAACAAAAGAAA--CAGCTT-C----C-CAAGACTGGTTTTTATTGTTGGGGTATTTA-------AAACAGCTTTACCTGGCAGAGGACACTTATGAAGACAATG-GA-TTAT--AGGAAACGATAA-AA-T-CATTTTTG-A--CGGAGT----T-ACC---TGATAC---------TTATC-CAAT--AT-TAATACAA-AGG--AG-ATA-ATGTTTTAAGTAGGATAGAAGC-CGAAAACTGTACATTCTGTAAGAGA-AAAGA-----ACTG---ATCTC-GC-CCT-ACGGG--C-------CTCGATCAGT--CTTCTCT-CACGGAA-TGTACAGTTT-TCG--TTATATCCTTTAC
gi|6 : ATGT--C-AT-TGGG-T----TTATC---AGAGCC---------T-GTC-C-ATTCAT-CGA-ACAA-AAG--AT-GTA-ATGTTTTAAGTAGGGTATAAGC-CTCAAACTGGCCATTCTGCGAGAG--AAA----------------CCC-G----T-ACGGG--C-------CTCGATCAGTTCTTTCTCT-CCCTGAA-TGGACAG-TT-TCGGCTTATATCCTTTAC
gi|6 : TTTC-ATTAAAATCTTTAAATTTTGAC-TGTGCAATGAAAA--TTA-----T-CTTCCTATCGGAG--GAAGATATGT--TGATA------------------TAGTG--AGTGAA--T---A-TAAGCTTAAA-C-ACCT----GCAGCGCAAAATACCCTTGA-tgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagtcaagggtattttgcgctgcaggtgtttaagcttatattcactcactatatcaacatatcttcctccgataggaagataattttcattgcacagtcaaaatttaaagattttaatgaaactatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|7 : gtaaaggatataagccgaaactgtccattcagggagagaaagaactgatcgaggcccgtacgggtttctctcgcagaatggccagtttgaggcttataccctacttaaaacattacatcttttgttcgatgaatggacaggctctgataaacccaatgacattgacaaacatgtataaagctcattctgaatacaaagtagtctgatattgttactagtctgttgatgaaaagAATGAAATTG--A-TA--GTAAAA-C-ACCT----GCAGCACAAGAT-ACTTT------TTACGAC-TAACA-CT-GTTCAATCA--GAA-TAGAAAAAACCCAGACT-T----T-----ACTGG-TTACATTGTCGGGCTACTT----TGT-ATACA----------------------TATGG----AATGAGCTTTATTCATG--ATGATCATAA-T---TGT--A-AT-TGGATT----T-ACC---TGAGTCAGTTAAATTT-ATC-C------T-TAGAACAA-AGG--AT-GTA-ATAGTTAAAGTAGGATATTATC-CTCAAAATGTCCATTctatagtactgtgaatactgtcatttctttaaaataactgatatttaggatatggaggtcacttttgatctgaaaggcattgtgttttcgaataccggaacgcccagctcgtgaaatgaag
gi|8 : ACATCACTTAAGA-CAGTGTCAGTGTTC-AAAGCAGTGCTATTAGCATCCCAAAAGTTTGAA-TGTCCAAT--AGA--AT---------TACTCGT---AG--GAAGACATGT--TGATAT-GACTC-G---AT----T--T-AAAGTCAG--TG---------CG--------TT----ACTA-ACAAA-----CGTGA----------------A-CT-GTCCAATGTGTGAA-CCAAAGAAG--CAGACTGTCACGC-CAAGACCGagacaacctaactttaagtattttcatgaaagtaaagtgttgtgaataccgtcact
gi|9 : gatacatgtaccactaacagtgataattgtgaatgaaggtagttttatacagcatggcaaagttaaAGC-CTCAAACTGT---------GAGAG--AAAAC-----ACTA---ATGTA-GG-CC-----------------CT--ATGAGC-----CTCT-CATGGAA-TAGACAGTTT-TTGGCTGATGTCCCTTACggagtgcgagaaacctttggaacctaactttgatgtgaaaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TGTCAGGAATTGATACATTCATATTTTCGCACGTGAGTGGAGGTTTCTTCCAGAAAACTTCTAATCCGGGGGACCGAAGAACGACTGAGGATTGGAGACTGAAGTATTTTATCTCAACGCTACTGAGTTTGTATTCATTGTGGAAGGTTT